Citrus Sinensis ID: 015825
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 399 | 2.2.26 [Sep-21-2011] | |||||||
| Q9P6I5 | 202 | Guanylate kinase OS=Schiz | yes | no | 0.446 | 0.881 | 0.505 | 4e-49 | |
| Q54XF2 | 202 | Guanylate kinase OS=Dicty | yes | no | 0.443 | 0.876 | 0.542 | 4e-49 | |
| Q64520 | 198 | Guanylate kinase OS=Mus m | yes | no | 0.453 | 0.914 | 0.497 | 3e-48 | |
| Q16774 | 197 | Guanylate kinase OS=Homo | yes | no | 0.453 | 0.918 | 0.480 | 7e-47 | |
| P15454 | 187 | Guanylate kinase OS=Sacch | yes | no | 0.456 | 0.973 | 0.478 | 2e-44 | |
| P31006 | 198 | Guanylate kinase OS=Sus s | yes | no | 0.478 | 0.964 | 0.481 | 2e-44 | |
| P46195 | 198 | Guanylate kinase OS=Bos t | yes | no | 0.453 | 0.914 | 0.491 | 5e-44 | |
| Q0I868 | 190 | Guanylate kinase OS=Synec | yes | no | 0.458 | 0.963 | 0.454 | 5e-40 | |
| Q72DM9 | 207 | Guanylate kinase OS=Desul | yes | no | 0.431 | 0.830 | 0.471 | 9e-39 | |
| Q3ALX6 | 185 | Guanylate kinase OS=Synec | yes | no | 0.448 | 0.967 | 0.448 | 2e-38 |
| >sp|Q9P6I5|KGUA_SCHPO Guanylate kinase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1198.05 PE=3 SV=1 | Back alignment and function desciption |
|---|
Score = 196 bits (497), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 90/178 (50%), Positives = 125/178 (70%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
KPVV+ GPSGVGK TL+ L+K+ GFSVSHTTR PRA EKDG+ YHF + +K
Sbjct: 19 KPVVVFGPSGVGKSTLLKRLLKDHGDKLGFSVSHTTRTPRAGEKDGIDYHFVTKEEFQKL 78
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICP 253
+ + KF+E+A GN+YGTS+ A++ + K+ ILDID+QG V+ASP+DA ++F+ P
Sbjct: 79 VAEEKFVEWAVFSGNMYGTSIMAIQELEAVNKKAILDIDLQGVLQVKASPIDAQYVFLAP 138
Query: 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLK 311
PS+E+LE RLR RGTE E IL+RL A+ EI+ + G FD ++ ND +E+ Y+ L+
Sbjct: 139 PSIEQLEVRLRGRGTENESAILQRLERARAEIEYSEKPGNFDALIVNDDVEKAYKQLE 196
|
Essential for recycling GMP and indirectly, cGMP. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) EC: 2EC: .EC: 7EC: .EC: 4EC: .EC: 8 |
| >sp|Q54XF2|KGUA_DICDI Guanylate kinase OS=Dictyostelium discoideum GN=guk1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 196 bits (497), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 96/177 (54%), Positives = 122/177 (68%)
Query: 135 PVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAI 194
P++ITGPSGVGKGTLI L KE+ FG VSHTTR PR E +GVHYHFT+ M + I
Sbjct: 11 PIIITGPSGVGKGTLIDKLRKEYEGSFGHIVSHTTRKPREGEINGVHYHFTDIPTMTEGI 70
Query: 195 KDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPP 254
K+G F+E A+VHGN YGTS +A++ V+D K CILDIDVQG SV+ + + FIFI PP
Sbjct: 71 KNGDFIEHANVHGNFYGTSKKALKDVSDKNKICILDIDVQGCESVKKANIPCKFIFISPP 130
Query: 255 SMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLK 311
+ E L+ERL RGTE E+ + KRL AK+E+ G FDH++ N+ L+ Y LK
Sbjct: 131 TFETLQERLIGRGTENEETLKKRLETAKKEMVYRDIPGFFDHVIVNNVLDVAYGELK 187
|
Essential for recycling GMP and indirectly, cGMP. Dictyostelium discoideum (taxid: 44689) EC: 2 EC: . EC: 7 EC: . EC: 4 EC: . EC: 8 |
| >sp|Q64520|KGUA_MOUSE Guanylate kinase OS=Mus musculus GN=Guk1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 192 bits (489), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 90/181 (49%), Positives = 126/181 (69%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
+PVV++GPSG GK TL+ L +E S+FGFSVSHTTR PR E+DG Y+F R +M++
Sbjct: 5 RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRD 64
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICP 253
I G F+E A GNLYGTS EAV AV + C+LD+D+QG RS++ + L I+IF+ P
Sbjct: 65 IAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQP 124
Query: 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKH 313
PS++ LE+RLR R TETE+ + KRL A+ +++ K G+FD ++ ND L++ Y LK+
Sbjct: 125 PSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIINDDLDKAYATLKQA 184
Query: 314 L 314
L
Sbjct: 185 L 185
|
Essential for recycling GMP and indirectly, cGMP. Mus musculus (taxid: 10090) EC: 2 EC: . EC: 7 EC: . EC: 4 EC: . EC: 8 |
| >sp|Q16774|KGUA_HUMAN Guanylate kinase OS=Homo sapiens GN=GUK1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 188 bits (477), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 87/181 (48%), Positives = 126/181 (69%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
+PVV++GPSG GK TL+ L++E +FGFSVSHTTR PR E++G Y+F R VM++
Sbjct: 5 RPVVLSGPSGAGKSTLLKRLLQEHSGIFGFSVSHTTRNPRPGEENGKDYYFVTREVMQRD 64
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICP 253
I G F+E A GNLYGTS AV+AV + C+LD+D+QG R+++A+ L I+I + P
Sbjct: 65 IAAGDFIEHAEFSGNLYGTSKVAVQAVQAMNRICVLDVDLQGVRNIKATDLRPIYISVQP 124
Query: 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKH 313
PS+ LE+RLR R TETE+ ++KRL A+ +++ K G+FD ++ ND L++ Y LK+
Sbjct: 125 PSLHVLEQRLRQRNTETEESLVKRLAAAQADMESSKEPGLFDVVIINDSLDQAYAELKEA 184
Query: 314 L 314
L
Sbjct: 185 L 185
|
Essential for recycling GMP and indirectly, cGMP. Homo sapiens (taxid: 9606) EC: 2 EC: . EC: 7 EC: . EC: 4 EC: . EC: 8 |
| >sp|P15454|KGUA_YEAST Guanylate kinase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GUK1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 88/184 (47%), Positives = 127/184 (69%), Gaps = 2/184 (1%)
Query: 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVME 191
+ +P+VI+GPSG GK TL+ L E+P FGFSVS TTR PRA E +G Y+F +
Sbjct: 1 MSRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFK 60
Query: 192 KAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASP-LDAIFIF 250
IK+ +F+E+A GN YG++V +V+ V+ +GK CILDID+QG +SV+A P L+A F+F
Sbjct: 61 SMIKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLF 120
Query: 251 ICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENL 310
I PPS+E+L++RL RGTETE+ I KRL A+ E+ + +G D ++ ND L++ Y+ L
Sbjct: 121 IAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAE-TGAHDKVIVNDDLDKAYKEL 179
Query: 311 KKHL 314
K +
Sbjct: 180 KDFI 183
|
Essential for recycling GMP and indirectly, cGMP. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) EC: 2 EC: . EC: 7 EC: . EC: 4 EC: . EC: 8 |
| >sp|P31006|KGUA_PIG Guanylate kinase OS=Sus scrofa GN=GUK1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 180 bits (457), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/193 (48%), Positives = 131/193 (67%), Gaps = 2/193 (1%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
+PVV++GPSG GK TL+ L++E S+FGFSVSHTTR PR E++G Y+F R VM++
Sbjct: 5 RPVVLSGPSGAGKSTLLKKLLQEHSSIFGFSVSHTTRDPRPGEENGKDYYFVTREVMQRD 64
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICP 253
I G F+E A GNLYGTS AV AV + C+LD+D+QG R+++ + L I+IF+ P
Sbjct: 65 IAAGDFIEHAEFSGNLYGTSKAAVRAVQAMNRICVLDVDLQGVRNIKKTDLQPIYIFVQP 124
Query: 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKH 313
PS++ LE+RLR R TETE+ + KRL AK +++ K G+FD I+ ND L++ Y LK+
Sbjct: 125 PSLDVLEQRLRQRNTETEESLAKRLAAAKADMESSKEPGLFDLIIINDSLDKAYWALKEA 184
Query: 314 LG--LDGSIATNH 324
L + + AT H
Sbjct: 185 LSEEIKKAQATGH 197
|
Essential for recycling GMP and indirectly, cGMP. Sus scrofa (taxid: 9823) EC: 2 EC: . EC: 7 EC: . EC: 4 EC: . EC: 8 |
| >sp|P46195|KGUA_BOVIN Guanylate kinase OS=Bos taurus GN=GUK1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 179 bits (453), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 89/181 (49%), Positives = 126/181 (69%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
+PVV++GPSG GK TL+ L++E S+FGFSVSHTTR PR E++G Y+F R VM++
Sbjct: 5 RPVVLSGPSGAGKSTLLKKLLQEHGSIFGFSVSHTTRDPRPGEENGKDYYFVTREVMQRD 64
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICP 253
I G F+E A GNLYGTS AV AV + C+LD+D+QG R+++ + L I+IF+ P
Sbjct: 65 IAAGDFIEHAEFSGNLYGTSKAAVRAVQAMNRICVLDVDLQGVRNIKKTDLRPIYIFVQP 124
Query: 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKH 313
PS++ LE+RLR R TETE+ + KRL A+ +++ K G+FD I+ ND L++ Y LK+
Sbjct: 125 PSLDVLEQRLRQRNTETEESLAKRLAAARADMESSKEPGLFDLIIVNDSLDKAYWALKEA 184
Query: 314 L 314
L
Sbjct: 185 L 185
|
Essential for recycling GMP and indirectly, cGMP. Bos taurus (taxid: 9913) EC: 2 EC: . EC: 7 EC: . EC: 4 EC: . EC: 8 |
| >sp|Q0I868|KGUA_SYNS3 Guanylate kinase OS=Synechococcus sp. (strain CC9311) GN=gmk PE=3 SV=1 | Back alignment and function description |
|---|
Score = 165 bits (418), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 85/187 (45%), Positives = 121/187 (64%), Gaps = 4/187 (2%)
Query: 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSV 189
G++ +P V+TGPSGVGKGTL++ L + P ++ SVS TTRAPR+ E DG+HY F +
Sbjct: 5 GSIARPTVLTGPSGVGKGTLVARLRERHPEIW-LSVSATTRAPRSGEIDGIHYFFHSKER 63
Query: 190 MEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFI 249
K ++ G LE+A GN YGT E V G +L+I+++GAR VR S +AI I
Sbjct: 64 FNKLVQSGGLLEWAEFAGNCYGTPREPVSERVANGIPVLLEIELEGARQVRKSLPEAIQI 123
Query: 250 FICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYEN 309
F+ PPS+EELE+R+R RGTE E+ I +RL+ A+EE+ ++ FD ++ ND LE
Sbjct: 124 FLAPPSVEELEKRIRGRGTEAEEAIQRRLKRAQEEL---EAQTEFDAVIVNDDLETALAE 180
Query: 310 LKKHLGL 316
L+K + L
Sbjct: 181 LEKQMNL 187
|
Essential for recycling GMP and indirectly, cGMP. Synechococcus sp. (strain CC9311) (taxid: 64471) EC: 2 EC: . EC: 7 EC: . EC: 4 EC: . EC: 8 |
| >sp|Q72DM9|KGUA_DESVH Guanylate kinase OS=Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) GN=gmk PE=3 SV=1 | Back alignment and function description |
|---|
Score = 161 bits (407), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 83/176 (47%), Positives = 109/176 (61%), Gaps = 4/176 (2%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIK 195
+V+ PSG GK TL L+ EFP F FSVS+TTR PR E DG YHF +
Sbjct: 10 LVLCAPSGTGKTTLTRRLLTEFPR-FAFSVSYTTRKPRNGEVDGKDYHFVTVEAFLRLRD 68
Query: 196 DGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPS 255
G F E+A VHGN YGT ++A + D G+ + DIDVQGAR +RAS ++FI PPS
Sbjct: 69 AGFFAEWAEVHGNFYGTPLKATLDLLDEGRDVLFDIDVQGARQLRASLQRGRYVFIMPPS 128
Query: 256 MEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLK 311
+ELE RLRARGT+ E+ I +RL NA +E+++ + FD + ND LE Y+ L+
Sbjct: 129 RDELEHRLRARGTDDEETIARRLANAAKELREARR---FDAWIVNDDLERAYDELR 181
|
Essential for recycling GMP and indirectly, cGMP. Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / NCIMB 8303) (taxid: 882) EC: 2 EC: . EC: 7 EC: . EC: 4 EC: . EC: 8 |
| >sp|Q3ALX6|KGUA_SYNSC Guanylate kinase OS=Synechococcus sp. (strain CC9605) GN=gmk PE=3 SV=1 | Back alignment and function description |
|---|
Score = 160 bits (404), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 82/183 (44%), Positives = 118/183 (64%), Gaps = 4/183 (2%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
K +ITGPSGVGKGTL++ L++ P ++ SVS TTR+PR E+DG++Y F R+ E
Sbjct: 6 KLTLITGPSGVGKGTLVNQLLERHPQIW-LSVSATTRSPRQGEQDGINYFFHSRAGFEAL 64
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICP 253
++ G FLE+A GN YGT VE AG+ +L+I+++GAR VR S D IF+ P
Sbjct: 65 VEQGGFLEWAEFAGNCYGTPRGPVEQQMAAGRPVLLEIELEGARQVRRSFPDGFQIFLAP 124
Query: 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKH 313
PS +ELE R+R RGT++ED I +RL A+EE++ + FD ++ ND LE ++
Sbjct: 125 PSFDELERRIRGRGTDSEDAIQRRLTRAREELEAQQE---FDAVVINDDLESALNQVETL 181
Query: 314 LGL 316
+GL
Sbjct: 182 MGL 184
|
Essential for recycling GMP and indirectly, cGMP. Synechococcus sp. (strain CC9605) (taxid: 110662) EC: 2 EC: . EC: 7 EC: . EC: 4 EC: . EC: 8 |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 399 | ||||||
| 224087031 | 401 | predicted protein [Populus trichocarpa] | 0.989 | 0.985 | 0.750 | 1e-176 | |
| 118482805 | 401 | unknown [Populus trichocarpa] | 0.989 | 0.985 | 0.748 | 1e-176 | |
| 255577505 | 402 | guanylate kinase, putative [Ricinus comm | 0.994 | 0.987 | 0.747 | 1e-175 | |
| 224139862 | 403 | predicted protein [Populus trichocarpa] | 1.0 | 0.990 | 0.739 | 1e-173 | |
| 356504801 | 399 | PREDICTED: guanylate kinase-like [Glycin | 0.992 | 0.992 | 0.726 | 1e-167 | |
| 356572044 | 399 | PREDICTED: guanylate kinase [Glycine max | 0.992 | 0.992 | 0.721 | 1e-165 | |
| 297739682 | 427 | unnamed protein product [Vitis vinifera] | 0.994 | 0.929 | 0.707 | 1e-162 | |
| 225441773 | 403 | PREDICTED: discs large homolog 1-like pr | 0.994 | 0.985 | 0.707 | 1e-162 | |
| 357509727 | 394 | Guanylate kinase [Medicago truncatula] g | 0.964 | 0.977 | 0.727 | 1e-161 | |
| 356498551 | 431 | PREDICTED: uncharacterized protein LOC10 | 0.977 | 0.904 | 0.714 | 1e-159 |
| >gi|224087031|ref|XP_002308036.1| predicted protein [Populus trichocarpa] gi|222854012|gb|EEE91559.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 625 bits (1611), Expect = e-176, Method: Compositional matrix adjust.
Identities = 304/405 (75%), Positives = 348/405 (85%), Gaps = 10/405 (2%)
Query: 1 MGEAPAFIVDNL-QNGNGFSNGFSLKSRDCETTTVIGDKTYVIAGSDE----SIGVKIYD 55
MGEAPAF+VDNL QN +GF + KS+ C TTT IGDKTYVI G ++ S+ V+I+D
Sbjct: 1 MGEAPAFVVDNLLQNQDGFGS----KSKGCNTTTTIGDKTYVIGGGNDESTLSVEVQIFD 56
Query: 56 RSTGNWLIPAVRGIEPRPCKGHSAVLLNEDRILVIKKGSSSDDCLWFLEVDTPYVREQKK 115
++TGN + P V G +P CKG SAV LN+DRIL++KKGS+ DDC+WFLEVDT +VREQKK
Sbjct: 57 KTTGNCVTPIVLGTKPNTCKGLSAVSLNDDRILIVKKGSTPDDCIWFLEVDTRFVREQKK 116
Query: 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAM 175
+ G +VVAWSKG G EKPVVI+GPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR M
Sbjct: 117 IQGTDVVAWSKGARGYAEKPVVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRCM 176
Query: 176 EKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQG 235
EKDGVHYHFTERS+MEK IKDGKFLE+ASVHGNLYGTS+EAVE V DAGKRCILDIDVQG
Sbjct: 177 EKDGVHYHFTERSIMEKEIKDGKFLEYASVHGNLYGTSIEAVEVVTDAGKRCILDIDVQG 236
Query: 236 ARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFD 295
ARSV+AS L+AIFIFICPPSMEELE+RLR+RGTETE+QILKRLRNAK E++QG SSGIFD
Sbjct: 237 ARSVKASSLEAIFIFICPPSMEELEKRLRSRGTETEEQILKRLRNAKTEMEQGHSSGIFD 296
Query: 296 HILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVANKVIIKCGAAE- 354
HILYND L+ECYE+LKK LGLDG+ A +++P+GIDLP DHSVSK+ NKVII CG E
Sbjct: 297 HILYNDNLDECYESLKKLLGLDGAAAATQRSAPQGIDLPTDHSVSKMDNKVIINCGTPEL 356
Query: 355 GKASKNLMVLDVSSLKGGAPGRTRGLQVYTVDSFSDGLNGVNKLS 399
KASKNL+VLDVSSLKGGAPGRTRGL VY +DSFSDGLNG+N+ S
Sbjct: 357 KKASKNLIVLDVSSLKGGAPGRTRGLDVYAIDSFSDGLNGINQTS 401
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|118482805|gb|ABK93319.1| unknown [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 623 bits (1607), Expect = e-176, Method: Compositional matrix adjust.
Identities = 303/405 (74%), Positives = 348/405 (85%), Gaps = 10/405 (2%)
Query: 1 MGEAPAFIVDNL-QNGNGFSNGFSLKSRDCETTTVIGDKTYVIAGSDE----SIGVKIYD 55
MGEAPAF+VDNL QN +GF + KS+ C TTT IGDKTYVI G ++ S+ V+I+D
Sbjct: 1 MGEAPAFVVDNLLQNQDGFGS----KSKGCNTTTTIGDKTYVIGGGNDESTLSVEVQIFD 56
Query: 56 RSTGNWLIPAVRGIEPRPCKGHSAVLLNEDRILVIKKGSSSDDCLWFLEVDTPYVREQKK 115
++TGN + P V G +P CKG SAV LN+DRIL++KKGS+ DDC+WFLEVDT +VREQKK
Sbjct: 57 KTTGNCVTPIVLGTKPNTCKGLSAVSLNDDRILIVKKGSTPDDCIWFLEVDTRFVREQKK 116
Query: 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAM 175
+ G +VVAWSKG G EKPVVI+GPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR M
Sbjct: 117 IQGTDVVAWSKGARGYAEKPVVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRCM 176
Query: 176 EKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQG 235
EKDGVHYHFTERS+MEK IKDGKFLE+ASVHGNLYGTS+EAVE V DAGKRCILDIDVQG
Sbjct: 177 EKDGVHYHFTERSIMEKEIKDGKFLEYASVHGNLYGTSIEAVEVVTDAGKRCILDIDVQG 236
Query: 236 ARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFD 295
ARSV+AS L+AIFIFICPPSMEELE+RLR+RGTETE+QILKRLRNAK +++QG SSGIFD
Sbjct: 237 ARSVKASSLEAIFIFICPPSMEELEKRLRSRGTETEEQILKRLRNAKTKMEQGHSSGIFD 296
Query: 296 HILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVANKVIIKCGAAE- 354
HILYND L+ECYE+LKK LGLDG+ A +++P+GIDLP DHSVSK+ NKVII CG E
Sbjct: 297 HILYNDNLDECYESLKKLLGLDGAAAATQRSAPQGIDLPTDHSVSKMDNKVIINCGTPEL 356
Query: 355 GKASKNLMVLDVSSLKGGAPGRTRGLQVYTVDSFSDGLNGVNKLS 399
KASKNL+VLDVSSLKGGAPGRTRGL VY +DSFSDGLNG+N+ S
Sbjct: 357 KKASKNLIVLDVSSLKGGAPGRTRGLDVYAIDSFSDGLNGINQTS 401
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255577505|ref|XP_002529631.1| guanylate kinase, putative [Ricinus communis] gi|223530916|gb|EEF32776.1| guanylate kinase, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 620 bits (1600), Expect = e-175, Method: Compositional matrix adjust.
Identities = 302/404 (74%), Positives = 345/404 (85%), Gaps = 7/404 (1%)
Query: 1 MGEAPAFIVDNLQNGNGFSNGFSLKSRDCETTTVIGDKTYVIAGSDE----SIGVKIYDR 56
MGEAPAF+ D+LQ+ N NGF LKS+D T I DKTYVI D+ SIGV I D
Sbjct: 1 MGEAPAFVFDDLQDAN--QNGFGLKSKDSGTAFTIRDKTYVIGCDDDESTLSIGVLIIDN 58
Query: 57 STGNWLIPAVRGIEPRPCKGHSAVLLNEDRILVIKKGSSSDDCLWFLEVDTPYVREQKKV 116
+TGN +IP V G +P+PCKG+SAV LN+DRIL+IKKGS+ DDC+WFLEVDT YV++QK
Sbjct: 59 ATGNSIIPTVLGSKPKPCKGYSAVPLNDDRILIIKKGSAPDDCIWFLEVDTKYVKQQKNN 118
Query: 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAME 176
+G EVVAWSKGV GN EKPVVI+GPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAME
Sbjct: 119 LGKEVVAWSKGVSGNAEKPVVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAME 178
Query: 177 KDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGA 236
KDGVHYHFTERSVMEK I++GKFLEFASVHGNLYGTS+EAVE VADAGKRCILDIDVQGA
Sbjct: 179 KDGVHYHFTERSVMEKEIREGKFLEFASVHGNLYGTSIEAVEVVADAGKRCILDIDVQGA 238
Query: 237 RSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDH 296
RSV AS L+AIFIFICPPSMEELE+RLRARGTE E+QILKRLRNAK EI+QG+SSGIF+H
Sbjct: 239 RSVSASSLEAIFIFICPPSMEELEKRLRARGTEAEEQILKRLRNAKAEIEQGQSSGIFEH 298
Query: 297 ILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVANKVIIKCGAAE-G 355
ILYND L+ECYENLKK LGLDG+ +++ +GI+LP DHS+SKV NK+II CG E
Sbjct: 299 ILYNDNLDECYENLKKLLGLDGTTVAMQKSTSQGINLPEDHSISKVDNKIIINCGTPELE 358
Query: 356 KASKNLMVLDVSSLKGGAPGRTRGLQVYTVDSFSDGLNGVNKLS 399
KASK+ ++LD SSLKGGAPGRTRGL V+ +DSFSDGLNG+N+LS
Sbjct: 359 KASKSFIILDASSLKGGAPGRTRGLDVHAIDSFSDGLNGINELS 402
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224139862|ref|XP_002323313.1| predicted protein [Populus trichocarpa] gi|222867943|gb|EEF05074.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 613 bits (1582), Expect = e-173, Method: Compositional matrix adjust.
Identities = 298/403 (73%), Positives = 345/403 (85%), Gaps = 4/403 (0%)
Query: 1 MGEAPAFIVDNLQNGNGFSNGFSLKSRDCETTTVIGDKTYVIAGSDES---IGVKIYDRS 57
MGEAPAFIVD+LQN GF NGF K + C+TTT IGDKTYVI G+DES + V+I+D++
Sbjct: 1 MGEAPAFIVDDLQNQIGFENGFGSKFKGCKTTTTIGDKTYVIGGNDESTLPVEVRIFDKA 60
Query: 58 TGNWLIPAVRGIEPRPCKGHSAVLLNEDRILVIKKGSSSDDCLWFLEVDTPYVREQKKVV 117
TGNW+ P V G +P CKG SA+ LN+DRIL++ KGS+ DDC+ FLEVDT +VREQKK+
Sbjct: 61 TGNWVTPIVLGSKPNSCKGLSAISLNDDRILIVNKGSAPDDCILFLEVDTWFVREQKKIR 120
Query: 118 GAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEK 177
G EVVAWSKGV G+ EKPVVI+GPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR MEK
Sbjct: 121 GTEVVAWSKGVWGDAEKPVVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRGMEK 180
Query: 178 DGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGAR 237
DGVHYHFTE+S+MEK IKDGKF+E+ASVHGNLYGTS+EAVE V DAGKRCILDIDVQGAR
Sbjct: 181 DGVHYHFTEQSIMEKEIKDGKFVEYASVHGNLYGTSIEAVEVVTDAGKRCILDIDVQGAR 240
Query: 238 SVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHI 297
SVRAS L+AI IFICPPSMEELE RLR+R TETE+QILKRL+NA+ E++QGKSSGIFDHI
Sbjct: 241 SVRASSLEAILIFICPPSMEELETRLRSRRTETEEQILKRLQNAEVEMEQGKSSGIFDHI 300
Query: 298 LYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVANKVIIKCGAAE-GK 356
LYND L++CYE+LKK LG+DG+ A ++P+GIDLPAD SVSK+ NK+II G E K
Sbjct: 301 LYNDNLDDCYESLKKLLGIDGAAAATQISAPQGIDLPADRSVSKMDNKIIINYGTPELEK 360
Query: 357 ASKNLMVLDVSSLKGGAPGRTRGLQVYTVDSFSDGLNGVNKLS 399
ASK+L+VLDVSSLKGGAPGRTRGL VY DSFSD LNG+N+ S
Sbjct: 361 ASKSLIVLDVSSLKGGAPGRTRGLDVYATDSFSDDLNGINQPS 403
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356504801|ref|XP_003521183.1| PREDICTED: guanylate kinase-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 595 bits (1534), Expect = e-167, Method: Compositional matrix adjust.
Identities = 292/402 (72%), Positives = 338/402 (84%), Gaps = 6/402 (1%)
Query: 1 MGEAPAFIVDNLQNGNGFSNGFSLKSRDCETTTVIGDKTYVIAGSDE---SIGVKIYDRS 57
MGEAPA +VD++Q+G NG LK+ C+TT +GDK YVI G+D+ SI V+I+DRS
Sbjct: 1 MGEAPALLVDDVQDGA--LNGLELKNVTCKTTATVGDKAYVIGGADDGTLSIEVQIFDRS 58
Query: 58 TGNWLIPAVRGIEPRPCKGHSAVLLNEDRILVIKKGSSSDDCLWFLEVDTPYVREQKKVV 117
G W+ P VRG +P C G SAV L EDRIL++KKGS DD +WFLE+DT YVR+Q+K++
Sbjct: 59 LGEWVRPTVRGTKPVSCNGLSAVPL-EDRILILKKGSKPDDQIWFLEIDTQYVRQQQKIL 117
Query: 118 GAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEK 177
G+EVVAWSKGVIGN EKPVVI+GPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR MEK
Sbjct: 118 GSEVVAWSKGVIGNAEKPVVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRGMEK 177
Query: 178 DGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGAR 237
DGVHYHFTE+S+MEK IK+GKFLEFASVHGNLYGTSVEAVE VADAGKRCILDIDVQGAR
Sbjct: 178 DGVHYHFTEKSIMEKEIKEGKFLEFASVHGNLYGTSVEAVELVADAGKRCILDIDVQGAR 237
Query: 238 SVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHI 297
SVRAS L+AIFIFICPPSMEELE+RLR RGTETE+QILKRLRNA+ EI+QGKSS +FD I
Sbjct: 238 SVRASSLEAIFIFICPPSMEELEKRLRDRGTETEEQILKRLRNAEAEIEQGKSSQVFDFI 297
Query: 298 LYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVANKVIIKCGAAEGKA 357
LYN+KLEECYE LKK LGLDG I ++ P IDLP DHSVSK+ NK+II C ++ K
Sbjct: 298 LYNEKLEECYERLKKLLGLDGFITAPPKSGPIEIDLPMDHSVSKIDNKIIINCISSGEKE 357
Query: 358 SKNLMVLDVSSLKGGAPGRTRGLQVYTVDSFSDGLNGVNKLS 399
SKNL++LDVSSLKGG PGRTRGL + SFS+GLNG+++LS
Sbjct: 358 SKNLIILDVSSLKGGVPGRTRGLNFQAIGSFSNGLNGIDQLS 399
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572044|ref|XP_003554180.1| PREDICTED: guanylate kinase [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 586 bits (1511), Expect = e-165, Method: Compositional matrix adjust.
Identities = 290/402 (72%), Positives = 333/402 (82%), Gaps = 6/402 (1%)
Query: 1 MGEAPAFIVDNLQNGNGFSNGFSLKSRDCETTTVIGDKTYVIAGSDE---SIGVKIYDRS 57
MGEAPA +VD++Q+G NG LK+ C+TT +GDK YVI G+D+ SI V+I+D S
Sbjct: 1 MGEAPALLVDDVQDGA--LNGLELKNGTCKTTATVGDKMYVIGGADDGTLSIEVQIFDGS 58
Query: 58 TGNWLIPAVRGIEPRPCKGHSAVLLNEDRILVIKKGSSSDDCLWFLEVDTPYVREQKKVV 117
G W+ P VRG +P C G SAV L EDRIL++KKGS DD +WFLE+DT YVR+Q+K++
Sbjct: 59 LGEWVRPTVRGTKPVLCNGLSAVPL-EDRILILKKGSKPDDRIWFLEIDTQYVRQQQKIL 117
Query: 118 GAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEK 177
G EVVAWSKGVIGN EKPVVI+GPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR +EK
Sbjct: 118 GTEVVAWSKGVIGNAEKPVVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRGIEK 177
Query: 178 DGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGAR 237
DGVHYHFTE+S+MEK IK+GKFLEFASVHGNLYGTSVEAVE VADAGKRCILDIDVQGAR
Sbjct: 178 DGVHYHFTEKSIMEKEIKEGKFLEFASVHGNLYGTSVEAVELVADAGKRCILDIDVQGAR 237
Query: 238 SVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHI 297
SVRAS L+AIFIFICPPSMEELE+RLR RGTETE+QILKRLRNA EI+QGKSS IFD I
Sbjct: 238 SVRASTLEAIFIFICPPSMEELEKRLRDRGTETEEQILKRLRNADAEIEQGKSSQIFDFI 297
Query: 298 LYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVANKVIIKCGAAEGKA 357
LYND LEEC+E LKK LGLD + T P IDLP DHSVSK+ NK+II C ++ K
Sbjct: 298 LYNDNLEECHERLKKLLGLDDFVTAPQSTGPIEIDLPMDHSVSKIDNKIIINCISSGEKE 357
Query: 358 SKNLMVLDVSSLKGGAPGRTRGLQVYTVDSFSDGLNGVNKLS 399
SKNL++LDVSSLKGGAPGRTRGL + SFS+GLNG+++LS
Sbjct: 358 SKNLVILDVSSLKGGAPGRTRGLNFQAIGSFSNGLNGIDQLS 399
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297739682|emb|CBI29864.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 578 bits (1490), Expect = e-162, Method: Compositional matrix adjust.
Identities = 285/403 (70%), Positives = 335/403 (83%), Gaps = 6/403 (1%)
Query: 1 MGEAPAFIVDNLQNGNGFSNGFSLKSRDCETTTVIGDKTYVIAGSDE--SIGVKIYDRST 58
MGEAPAF VD+LQ FSNGF K + E+ T +GDK Y I + E ++ +I+D ST
Sbjct: 25 MGEAPAFFVDDLQQV--FSNGFDPKPKVSESETTVGDKIYAIGEAHEGLALSTRIFDNST 82
Query: 59 GNWLIPAVRGIEPRPCKGHSAVLLNEDRILVIKKGSSSDDCLWFLEVDTPYVREQKKVVG 118
G W+IPAV G +P KGHSAVL+NEDRIL+IK+GS+ DDC+WFLEVDT +VREQKK +G
Sbjct: 83 GEWVIPAVLGTKPEAGKGHSAVLVNEDRILIIKRGSTPDDCIWFLEVDTEFVREQKKTLG 142
Query: 119 AEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKD 178
EVVAWS+GVIG+ KP+VI+GPSGVGKGTLIS LMKEFPSMFGFSVSHTTRAPR E +
Sbjct: 143 TEVVAWSRGVIGDANKPIVISGPSGVGKGTLISKLMKEFPSMFGFSVSHTTRAPRDKEIN 202
Query: 179 GVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARS 238
GVHYHFTERSVMEK IKD KFLEFA+VHGNLYGTS+EAVE VADAGKRCILDIDVQGARS
Sbjct: 203 GVHYHFTERSVMEKEIKDVKFLEFANVHGNLYGTSIEAVEVVADAGKRCILDIDVQGARS 262
Query: 239 VRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHIL 298
VRAS L+AIFIFICPPS EELE+RLRARGTETE+QI KRLRNA+ E++QG+SSG+FDHIL
Sbjct: 263 VRASSLEAIFIFICPPSFEELEKRLRARGTETEEQIQKRLRNAEAELEQGQSSGLFDHIL 322
Query: 299 YNDKLEECYENLKKHLGLDGSIA-TNHQTSPKGIDLPADHSVSKVANKVIIKCGAAE-GK 356
ND L++CYENLKK L LDG++A T + SPK ++LP HSV K+ KV+I C E K
Sbjct: 323 VNDDLDKCYENLKKLLDLDGNVADTFSKPSPKPVELPIGHSVLKINEKVVISCRTQELEK 382
Query: 357 ASKNLMVLDVSSLKGGAPGRTRGLQVYTVDSFSDGLNGVNKLS 399
ASKNL+VLDVSSLKGGAPGRTRGL++ +DSFSD +NG+N+L+
Sbjct: 383 ASKNLIVLDVSSLKGGAPGRTRGLKMRAMDSFSDVVNGINQLT 425
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225441773|ref|XP_002283613.1| PREDICTED: discs large homolog 1-like protein-like isoform 1 [Vitis vinifera] gi|359481713|ref|XP_003632662.1| PREDICTED: discs large homolog 1-like protein-like isoform 2 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 577 bits (1488), Expect = e-162, Method: Compositional matrix adjust.
Identities = 285/403 (70%), Positives = 335/403 (83%), Gaps = 6/403 (1%)
Query: 1 MGEAPAFIVDNLQNGNGFSNGFSLKSRDCETTTVIGDKTYVIAGSDE--SIGVKIYDRST 58
MGEAPAF VD+LQ FSNGF K + E+ T +GDK Y I + E ++ +I+D ST
Sbjct: 1 MGEAPAFFVDDLQQV--FSNGFDPKPKVSESETTVGDKIYAIGEAHEGLALSTRIFDNST 58
Query: 59 GNWLIPAVRGIEPRPCKGHSAVLLNEDRILVIKKGSSSDDCLWFLEVDTPYVREQKKVVG 118
G W+IPAV G +P KGHSAVL+NEDRIL+IK+GS+ DDC+WFLEVDT +VREQKK +G
Sbjct: 59 GEWVIPAVLGTKPEAGKGHSAVLVNEDRILIIKRGSTPDDCIWFLEVDTEFVREQKKTLG 118
Query: 119 AEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKD 178
EVVAWS+GVIG+ KP+VI+GPSGVGKGTLIS LMKEFPSMFGFSVSHTTRAPR E +
Sbjct: 119 TEVVAWSRGVIGDANKPIVISGPSGVGKGTLISKLMKEFPSMFGFSVSHTTRAPRDKEIN 178
Query: 179 GVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARS 238
GVHYHFTERSVMEK IKD KFLEFA+VHGNLYGTS+EAVE VADAGKRCILDIDVQGARS
Sbjct: 179 GVHYHFTERSVMEKEIKDVKFLEFANVHGNLYGTSIEAVEVVADAGKRCILDIDVQGARS 238
Query: 239 VRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHIL 298
VRAS L+AIFIFICPPS EELE+RLRARGTETE+QI KRLRNA+ E++QG+SSG+FDHIL
Sbjct: 239 VRASSLEAIFIFICPPSFEELEKRLRARGTETEEQIQKRLRNAEAELEQGQSSGLFDHIL 298
Query: 299 YNDKLEECYENLKKHLGLDGSIA-TNHQTSPKGIDLPADHSVSKVANKVIIKCGAAE-GK 356
ND L++CYENLKK L LDG++A T + SPK ++LP HSV K+ KV+I C E K
Sbjct: 299 VNDDLDKCYENLKKLLDLDGNVADTFSKPSPKPVELPIGHSVLKINEKVVISCRTQELEK 358
Query: 357 ASKNLMVLDVSSLKGGAPGRTRGLQVYTVDSFSDGLNGVNKLS 399
ASKNL+VLDVSSLKGGAPGRTRGL++ +DSFSD +NG+N+L+
Sbjct: 359 ASKNLIVLDVSSLKGGAPGRTRGLKMRAMDSFSDVVNGINQLT 401
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357509727|ref|XP_003625152.1| Guanylate kinase [Medicago truncatula] gi|124360196|gb|ABN08209.1| Guanylate kinase/L-type calcium channel region; Galactose oxidase, central [Medicago truncatula] gi|355500167|gb|AES81370.1| Guanylate kinase [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 574 bits (1480), Expect = e-161, Method: Compositional matrix adjust.
Identities = 286/393 (72%), Positives = 329/393 (83%), Gaps = 8/393 (2%)
Query: 1 MGEAPAFIVDNLQNGNGFSNGFSLKSRDCETTTVIGDKTYVIAGSDE---SIGVKIYDRS 57
MGEAPAF+VD+LQ+G NG L + C+TTTV+G+KTYV G+D+ SI V+I+DRS
Sbjct: 1 MGEAPAFLVDDLQDGP--LNGLELNNGTCKTTTVVGEKTYVTVGADDGTLSIDVQIFDRS 58
Query: 58 TGNWLIPAVRGIEPRPCKGHSAVLLNEDRILVIKKGSSSDDCLWFLEVDTPYVREQKKVV 117
G W+ P V G +P C GHSAVL E+RILV+KKGS SDD +WFLEVDT YVR+Q+K +
Sbjct: 59 LGEWVHPTVLGTKPLSCNGHSAVLF-ENRILVLKKGSKSDDQIWFLEVDTEYVRQQRKKL 117
Query: 118 GAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEK 177
G EVVAWSKGVIGN EKP+VI+GPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR MEK
Sbjct: 118 GTEVVAWSKGVIGNAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRNMEK 177
Query: 178 DGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGAR 237
DGVHYHFTE+SVMEK IK GKFLEFASVHGNLYGTSVEAVE VADAGKRCILDIDVQGAR
Sbjct: 178 DGVHYHFTEKSVMEKEIKSGKFLEFASVHGNLYGTSVEAVEVVADAGKRCILDIDVQGAR 237
Query: 238 SVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHI 297
SVRAS L+AIFIF+CPPSMEELE+RLR RGTETE+QILKRLRNA+ EI+QGKSS IFD I
Sbjct: 238 SVRASSLEAIFIFVCPPSMEELEKRLRDRGTETEEQILKRLRNAQAEIEQGKSSNIFDFI 297
Query: 298 LYNDKLEECYENLKKHLGLDGSIATNHQT-SPKGIDLPADHSVSKVANKVIIKC-GAAEG 355
LYND LEECY+ LKK LGLDG +AT+ ++ +P+ I+LP DHSVSK+ +K+II C +
Sbjct: 298 LYNDNLEECYDRLKKLLGLDGFVATSPKSAAPREINLPTDHSVSKIDDKIIISCISSGLD 357
Query: 356 KASKNLMVLDVSSLKGGAPGRTRGLQVYTVDSF 388
K SKN ++LDVSSLKGGAPGRTRGL + S
Sbjct: 358 KESKNSIMLDVSSLKGGAPGRTRGLDFQVIGSM 390
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356498551|ref|XP_003518114.1| PREDICTED: uncharacterized protein LOC100812658 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 566 bits (1458), Expect = e-159, Method: Compositional matrix adjust.
Identities = 285/399 (71%), Positives = 328/399 (82%), Gaps = 9/399 (2%)
Query: 1 MGEAPAFIVDNLQNGNGFSNGFSLKSRDCETTTVIGDKTYVIAGS-DESIGVK---IYDR 56
MGEAP FI +LQNG NGF LKS ET T++G+K YVI G+ E+ VK + +
Sbjct: 33 MGEAPTFIPQDLQNGT--CNGFELKSGTFETDTIVGNKKYVIGGTYGETFSVKDQILDNN 90
Query: 57 STGNWLIPAVRGIEPRPCKGHSAVLLNEDRILVIKKGSSSDDCLWFLEVDTPYVREQKKV 116
G W+ G +P C GHSAVLL +DRIL++KK + DDC+WFLEVDTPYVR+QKK+
Sbjct: 91 GLGEWVDLIQLGTKPISCNGHSAVLL-KDRILILKKNAKPDDCIWFLEVDTPYVRQQKKI 149
Query: 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAME 176
+G +VVAWS GVIGN EKPVVI+GPSGVGKGTLISMLM EFPSMFGFSVSHTTRA R ME
Sbjct: 150 LGIDVVAWSNGVIGNAEKPVVISGPSGVGKGTLISMLMTEFPSMFGFSVSHTTRAARGME 209
Query: 177 KDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGA 236
KDGVHYHFTE++VMEK IKDGKFLEFASVHGNLYGTSVEAVE V+DAGKRCILDIDVQGA
Sbjct: 210 KDGVHYHFTEKNVMEKEIKDGKFLEFASVHGNLYGTSVEAVEMVSDAGKRCILDIDVQGA 269
Query: 237 RSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDH 296
RSVRAS L+A+FIFICPPSMEELE+RLR RGTETE+Q+LKRLRNA+ EI+QGKSSGIFDH
Sbjct: 270 RSVRASSLEAMFIFICPPSMEELEKRLRDRGTETEEQVLKRLRNAQAEIEQGKSSGIFDH 329
Query: 297 ILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVANKVIIKC-GAAEG 355
ILYN KLEECYENLKK LGLDG + T +++PK ++LP DHSVSK+ +K+II C +
Sbjct: 330 ILYNGKLEECYENLKKLLGLDGYV-TPPKSAPKKMNLPRDHSVSKIDDKIIIGCISSGLE 388
Query: 356 KASKNLMVLDVSSLKGGAPGRTRGLQVYTVDSFSDGLNG 394
K SKNL++LDVSSLKGGAPGRTRGL +DSFSDG NG
Sbjct: 389 KESKNLIMLDVSSLKGGAPGRTRGLDFQVIDSFSDGFNG 427
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 399 | ||||||
| TAIR|locus:2103518 | 390 | AGK2 "guanylate kinase" [Arabi | 0.959 | 0.982 | 0.666 | 4.4e-139 | |
| TAIR|locus:2054356 | 387 | GK-1 "guanylate kinase 1" [Ara | 0.942 | 0.971 | 0.670 | 1.1e-133 | |
| DICTYBASE|DDB_G0279001 | 202 | gmkA "guanylate kinase" [Dicty | 0.443 | 0.876 | 0.542 | 5.4e-47 | |
| POMBASE|SPBC1198.05 | 202 | SPBC1198.05 "guanylate kinase | 0.446 | 0.881 | 0.505 | 1.8e-46 | |
| UNIPROTKB|E9PTV0 | 219 | Guk1 "Protein Guk1" [Rattus no | 0.506 | 0.922 | 0.465 | 1e-45 | |
| MGI|MGI:95871 | 198 | Guk1 "guanylate kinase 1" [Mus | 0.453 | 0.914 | 0.497 | 2.7e-45 | |
| WB|WBGene00020190 | 216 | guk-1 [Caenorhabditis elegans | 0.438 | 0.810 | 0.505 | 2.7e-45 | |
| RGD|1309638 | 198 | Guk1 "guanylate kinase 1" [Rat | 0.453 | 0.914 | 0.502 | 3.4e-45 | |
| UNIPROTKB|F1S5R9 | 198 | LOC100513720 "Uncharacterized | 0.478 | 0.964 | 0.481 | 4.4e-45 | |
| UNIPROTKB|P31006 | 198 | GUK1 "Guanylate kinase" [Sus s | 0.478 | 0.964 | 0.481 | 4.4e-45 |
| TAIR|locus:2103518 AGK2 "guanylate kinase" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1361 (484.2 bits), Expect = 4.4e-139, P = 4.4e-139
Identities = 262/393 (66%), Positives = 328/393 (83%)
Query: 1 MGEAPAFIVDNLQNGNGFSNGFSLKS--RDCETTTVIGDKTYVIAGSDES----IGVKIY 54
MGEAPAF VD+L+NG ++NGF +KS ++ +T+ +IGD+++VI G+ E +GV+I+
Sbjct: 1 MGEAPAFFVDHLENG--YTNGFGVKSEPKNRDTSVLIGDRSFVIGGNHEGNPLFLGVQIH 58
Query: 55 DRSTGNWLIPAVRGIEPRPCKGHSAVLLNEDRILVIKKGSSSDDCLWFLEVDTPYVREQK 114
D+ T W P+V G P+PCKG+SA++L + RILVIKKGS+SDD +WFLEVDTP++REQK
Sbjct: 59 DKVTNKWSSPSVLGTGPKPCKGYSAIVLPKGRILVIKKGSASDDSIWFLEVDTPFIREQK 118
Query: 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA 174
K++G EVVAWSKGV GN EKP+VI+GPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR
Sbjct: 119 KLLGREVVAWSKGVRGNAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRC 178
Query: 175 MEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQ 234
MEK+GVHYHFT+++VMEK IKDGKFLEFASVHGNLYGTS+E+VE V D+GKRCILDIDVQ
Sbjct: 179 MEKNGVHYHFTDKTVMEKEIKDGKFLEFASVHGNLYGTSIESVEVVTDSGKRCILDIDVQ 238
Query: 235 GARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIF 294
GARSV+AS LDAIFIF+CPPSM+ELE+RLRARGTETE+QI KRLRNA EIK GKSSGIF
Sbjct: 239 GARSVKASSLDAIFIFVCPPSMKELEDRLRARGTETEEQIQKRLRNADAEIKAGKSSGIF 298
Query: 295 DHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVANKVIIKCGAAE 354
+H LYND LEECY+ LK LG++ N + +GI+LP +H+V+K+ +K++I+ E
Sbjct: 299 EHKLYNDNLEECYKTLKNLLGINDLAPVNGVEAVEGINLPKEHTVTKMDDKILIQ-ETGE 357
Query: 355 GKASKNLMVLDVSSLKGGAPGRTRGLQVYTVDS 387
G +K ++VLD+SS+ GGAPGRTRG+ + TV S
Sbjct: 358 GTKNK-MIVLDLSSINGGAPGRTRGIVLDTVKS 389
|
|
| TAIR|locus:2054356 GK-1 "guanylate kinase 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1310 (466.2 bits), Expect = 1.1e-133, P = 1.1e-133
Identities = 260/388 (67%), Positives = 316/388 (81%)
Query: 1 MGEAPAFIVDNLQNGNGFSNGFSLKSR--DCETTTVIGDKTYVIAGSDE----SIGVKIY 54
MGEAPA +VD+ +NG+ SNG +KS + E T +GD+ ++I G+ E SIGV+IY
Sbjct: 1 MGEAPAVLVDHPENGH--SNGVCVKSEPENTEITVDVGDRIFLIGGTHERNNFSIGVQIY 58
Query: 55 DRSTGNWLIPAVRGIEPRPCKGHSAVLLNEDRILVIKKGSSSDDCLWFLEVDTPYVREQK 114
D+ + NW P V G P+P KG+SA +L + RILVIKKGS +D +WFLEVD+PYVREQK
Sbjct: 59 DKISNNWFSPIVLGTGPKPSKGYSAFVLEQGRILVIKKGSPRNDSIWFLEVDSPYVREQK 118
Query: 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA 174
K++ EVVAWSKGV GN EKP+VI+GPSGVGKGTLISMLMKEFPSMFGFSVSHTTR+PR+
Sbjct: 119 KLLRKEVVAWSKGVRGNAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRSPRS 178
Query: 175 MEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQ 234
ME DGVHYHF ++ VMEK IKDGKFLEFASVHGNLYGTS+E+VEAV D+GKRCILDIDVQ
Sbjct: 179 MEMDGVHYHFADKKVMEKEIKDGKFLEFASVHGNLYGTSIESVEAVTDSGKRCILDIDVQ 238
Query: 235 GARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIF 294
GARSVRAS LDAIFIF+CPPSM+ELE+RLRARGTETE+QI KRLRNA+ EIK+G SSGIF
Sbjct: 239 GARSVRASSLDAIFIFVCPPSMKELEDRLRARGTETEEQIQKRLRNAEAEIKEGISSGIF 298
Query: 295 DHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVANKVIIKCGAAE 354
ILYND LEECY+ LK LGLDG +A + +GI+LP +++VSK+ +K+II+
Sbjct: 299 GLILYNDNLEECYKKLKNLLGLDG-LAHVNGVEIEGINLPIEYAVSKMEDKIIIQ---ET 354
Query: 355 GKASKNLMVLDVSSLKGGAPGRTRGLQV 382
GK ++N +V+D+SSL GGAPGRTRG+ V
Sbjct: 355 GKETRNKIVVDISSLNGGAPGRTRGILV 382
|
|
| DICTYBASE|DDB_G0279001 gmkA "guanylate kinase" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 492 (178.3 bits), Expect = 5.4e-47, P = 5.4e-47
Identities = 96/177 (54%), Positives = 122/177 (68%)
Query: 135 PVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAI 194
P++ITGPSGVGKGTLI L KE+ FG VSHTTR PR E +GVHYHFT+ M + I
Sbjct: 11 PIIITGPSGVGKGTLIDKLRKEYEGSFGHIVSHTTRKPREGEINGVHYHFTDIPTMTEGI 70
Query: 195 KDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPP 254
K+G F+E A+VHGN YGTS +A++ V+D K CILDIDVQG SV+ + + FIFI PP
Sbjct: 71 KNGDFIEHANVHGNFYGTSKKALKDVSDKNKICILDIDVQGCESVKKANIPCKFIFISPP 130
Query: 255 SMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLK 311
+ E L+ERL RGTE E+ + KRL AK+E+ G FDH++ N+ L+ Y LK
Sbjct: 131 TFETLQERLIGRGTENEETLKKRLETAKKEMVYRDIPGFFDHVIVNNVLDVAYGELK 187
|
|
| POMBASE|SPBC1198.05 SPBC1198.05 "guanylate kinase (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 487 (176.5 bits), Expect = 1.8e-46, P = 1.8e-46
Identities = 90/178 (50%), Positives = 125/178 (70%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
KPVV+ GPSGVGK TL+ L+K+ GFSVSHTTR PRA EKDG+ YHF + +K
Sbjct: 19 KPVVVFGPSGVGKSTLLKRLLKDHGDKLGFSVSHTTRTPRAGEKDGIDYHFVTKEEFQKL 78
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICP 253
+ + KF+E+A GN+YGTS+ A++ + K+ ILDID+QG V+ASP+DA ++F+ P
Sbjct: 79 VAEEKFVEWAVFSGNMYGTSIMAIQELEAVNKKAILDIDLQGVLQVKASPIDAQYVFLAP 138
Query: 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLK 311
PS+E+LE RLR RGTE E IL+RL A+ EI+ + G FD ++ ND +E+ Y+ L+
Sbjct: 139 PSIEQLEVRLRGRGTENESAILQRLERARAEIEYSEKPGNFDALIVNDDVEKAYKQLE 196
|
|
| UNIPROTKB|E9PTV0 Guk1 "Protein Guk1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 480 (174.0 bits), Expect = 1.0e-45, P = 1.0e-45
Identities = 95/204 (46%), Positives = 135/204 (66%)
Query: 113 QKKVVGAEVVAWSKGVIGNVE--KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTR 170
++ +VG V A + + + +PVV++GPSG GK TL+ L +E S+FGFSVSHTTR
Sbjct: 3 RRPLVGLAVAALGRVPVDGMAGPRPVVLSGPSGAGKSTLLKKLFQEHGSVFGFSVSHTTR 62
Query: 171 APRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILD 230
PR E+DG Y+F R +M++ I G F+E A GNLYGTS EAV AV + C+LD
Sbjct: 63 NPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLD 122
Query: 231 IDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKS 290
+D+QG RS++ + L I+I + PPSM+ LE+RLR R TETE+ + KRL A+ +++ K
Sbjct: 123 VDLQGVRSIKKTDLHPIYISVQPPSMDVLEQRLRQRNTETEESLAKRLAAAQADMESSKE 182
Query: 291 SGIFDHILYNDKLEECYENLKKHL 314
G+FD ++ ND L+E Y LK+ L
Sbjct: 183 PGLFDLVIVNDNLDEAYVTLKQAL 206
|
|
| MGI|MGI:95871 Guk1 "guanylate kinase 1" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 90/181 (49%), Positives = 126/181 (69%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
+PVV++GPSG GK TL+ L +E S+FGFSVSHTTR PR E+DG Y+F R +M++
Sbjct: 5 RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRD 64
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICP 253
I G F+E A GNLYGTS EAV AV + C+LD+D+QG RS++ + L I+IF+ P
Sbjct: 65 IAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQP 124
Query: 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKH 313
PS++ LE+RLR R TETE+ + KRL A+ +++ K G+FD ++ ND L++ Y LK+
Sbjct: 125 PSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIINDDLDKAYATLKQA 184
Query: 314 L 314
L
Sbjct: 185 L 185
|
|
| WB|WBGene00020190 guk-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 89/176 (50%), Positives = 132/176 (75%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
+P+V++GPSG GK T+++ M+E+P+ F FSVSHTTR PRA E+ G HY+FTE+ M++
Sbjct: 25 RPIVLSGPSGGGKSTILTRAMQEYPNSFAFSVSHTTRQPRAGEEHGKHYYFTEKEKMQEM 84
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICP 253
IK+ +FLEFA+ GN YGTS + V + ++GK C+LDI++QG R+++ S LDA +I I
Sbjct: 85 IKNNEFLEFATFSGNTYGTSKKTVLEIENSGKICVLDIELQGVRNIKNSHLDARYILIRA 144
Query: 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQ-GKSSGIFDHILYNDKLEECYE 308
PS++ LEERLRARGTETE+ + KRL++A E++ + K+ +FD ++ ND LE Y+
Sbjct: 145 PSIKLLEERLRARGTETEESLSKRLQHASEDLVEIEKNPTLFDKVIVNDDLERAYK 200
|
|
| RGD|1309638 Guk1 "guanylate kinase 1" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 475 (172.3 bits), Expect = 3.4e-45, P = 3.4e-45
Identities = 91/181 (50%), Positives = 125/181 (69%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
+PVV++GPSG GK TL+ L +E S+FGFSVSHTTR PR E+DG Y+F R +M++
Sbjct: 5 RPVVLSGPSGAGKSTLLKKLFQEHGSVFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRD 64
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICP 253
I G F+E A GNLYGTS EAV AV + C+LD+D+QG RS++ + L I+I + P
Sbjct: 65 IAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLHPIYISVQP 124
Query: 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKH 313
PSM+ LE+RLR R TETE+ + KRL A+ +++ K G+FD ++ ND L+E Y LK+
Sbjct: 125 PSMDVLEQRLRQRNTETEESLAKRLAAAQADMESSKEPGLFDLVIVNDNLDEAYVTLKQA 184
Query: 314 L 314
L
Sbjct: 185 L 185
|
|
| UNIPROTKB|F1S5R9 LOC100513720 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
Identities = 93/193 (48%), Positives = 131/193 (67%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
+PVV++GPSG GK TL+ L++E S+FGFSVSHTTR PR E++G Y+F R VM++
Sbjct: 5 RPVVLSGPSGAGKSTLLKKLLQEHSSIFGFSVSHTTRDPRPGEENGKDYYFVTREVMQRD 64
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICP 253
I G F+E A GNLYGTS AV AV + C+LD+D+QG R+++ + L I+IF+ P
Sbjct: 65 IAAGDFIEHAEFSGNLYGTSKAAVRAVQAMNRICVLDVDLQGVRNIKKTDLQPIYIFVQP 124
Query: 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKH 313
PS++ LE+RLR R TETE+ + KRL AK +++ K G+FD I+ ND L++ Y LK+
Sbjct: 125 PSLDVLEQRLRQRNTETEESLAKRLAAAKADMESSKEPGLFDLIIINDSLDKAYWALKEA 184
Query: 314 LG--LDGSIATNH 324
L + + AT H
Sbjct: 185 LSEEIKKAQATGH 197
|
|
| UNIPROTKB|P31006 GUK1 "Guanylate kinase" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 474 (171.9 bits), Expect = 4.4e-45, P = 4.4e-45
Identities = 93/193 (48%), Positives = 131/193 (67%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
+PVV++GPSG GK TL+ L++E S+FGFSVSHTTR PR E++G Y+F R VM++
Sbjct: 5 RPVVLSGPSGAGKSTLLKKLLQEHSSIFGFSVSHTTRDPRPGEENGKDYYFVTREVMQRD 64
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICP 253
I G F+E A GNLYGTS AV AV + C+LD+D+QG R+++ + L I+IF+ P
Sbjct: 65 IAAGDFIEHAEFSGNLYGTSKAAVRAVQAMNRICVLDVDLQGVRNIKKTDLQPIYIFVQP 124
Query: 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKH 313
PS++ LE+RLR R TETE+ + KRL AK +++ K G+FD I+ ND L++ Y LK+
Sbjct: 125 PSLDVLEQRLRQRNTETEESLAKRLAAAKADMESSKEPGLFDLIIINDSLDKAYWALKEA 184
Query: 314 LG--LDGSIATNH 324
L + + AT H
Sbjct: 185 LSEEIKKAQATGH 197
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
| Your Input: | |||||||||||
| grail3.0024038102 | SubName- Full=Putative uncharacterized protein; (401 aa) | ||||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| gw1.III.614.1 | GMP synthetase (EC-6.3.5.2) (434 aa) | • | • | • | 0.921 | ||||||
| estExt_fgenesh4_pg.C_LG_V1144 | SubName- Full=Putative uncharacterized protein; (188 aa) | • | 0.905 | ||||||||
| estExt_fgenesh4_pg.C_1270057 | adenine phosphoribosyltransferase (EC-2.4.2.7) (183 aa) | • | • | 0.901 | |||||||
| gw1.XIII.2192.1 | polyribonucleotide nucleotidyltransferase (EC-2.7.7.8) (853 aa) | • | 0.899 | ||||||||
| gw1.XII.1350.1 | hypothetical protein (612 aa) | • | 0.899 | ||||||||
| gw1.VIII.327.1 | ribonucleoside-diphosphate reductase (EC-1.17.4.1) (342 aa) | • | 0.899 | ||||||||
| gw1.IX.2629.1 | pyruvate kinase (EC-2.7.1.40) (481 aa) | • | 0.899 | ||||||||
| gw1.II.1445.1 | SubName- Full=Putative uncharacterized protein; (164 aa) | • | 0.899 | ||||||||
| gw1.I.4193.1 | pyruvate kinase (EC-2.7.1.40) (481 aa) | • | 0.899 | ||||||||
| gw1.I.2477.1 | hypothetical protein (950 aa) | • | 0.899 | ||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 399 | |||
| PLN02772 | 398 | PLN02772, PLN02772, guanylate kinase | 0.0 | |
| TIGR03263 | 179 | TIGR03263, guanyl_kin, guanylate kinase | 3e-85 | |
| PRK00300 | 205 | PRK00300, gmk, guanylate kinase; Provisional | 3e-82 | |
| COG0194 | 191 | COG0194, Gmk, Guanylate kinase [Nucleotide transpo | 3e-75 | |
| smart00072 | 174 | smart00072, GuKc, Guanylate kinase homologues | 1e-71 | |
| pfam00625 | 183 | pfam00625, Guanylate_kin, Guanylate kinase | 6e-68 | |
| cd00071 | 137 | cd00071, GMPK, Guanosine monophosphate kinase (GMP | 6e-66 | |
| PRK14737 | 186 | PRK14737, gmk, guanylate kinase; Provisional | 8e-47 | |
| PRK14738 | 206 | PRK14738, gmk, guanylate kinase; Provisional | 9e-45 | |
| COG3709 | 192 | COG3709, COG3709, Uncharacterized component of pho | 5e-07 | |
| PRK10078 | 186 | PRK10078, PRK10078, ribose 1,5-bisphosphokinase; P | 1e-06 | |
| TIGR02322 | 179 | TIGR02322, phosphon_PhnN, phosphonate metabolism p | 2e-05 | |
| pfam13238 | 128 | pfam13238, AAA_18, AAA domain | 0.004 |
| >gnl|CDD|215414 PLN02772, PLN02772, guanylate kinase | Back alignment and domain information |
|---|
Score = 696 bits (1798), Expect = 0.0
Identities = 299/403 (74%), Positives = 343/403 (85%), Gaps = 10/403 (2%)
Query: 1 MGEAPAFIVDNLQNGNGFSNGFSLKSRDCETTTVIGDKTYVIAGSDE----SIGVKIYDR 56
MGEAPAF VD+L+NG ++NGF +K ++ ET+ IGDKTYVI G+ E SIGV+I D+
Sbjct: 1 MGEAPAFFVDHLENG--YTNGFGVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDK 58
Query: 57 STGNWLIPAVRGIEPRPCKGHSAVLLNEDRILVIKKGSSSDDCLWFLEVDTPYVREQKKV 116
T NW+ P V G P+PCKG+SAV+LN+DRILVIKKGS+ DD +WFLEVDTP+VREQKK+
Sbjct: 59 ITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSAPDDSIWFLEVDTPFVREQKKL 118
Query: 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAME 176
+G EVVAWSKGV GN EKP+VI+GPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR ME
Sbjct: 119 LGTEVVAWSKGVRGNAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPREME 178
Query: 177 KDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGA 236
KDGVHYHFTERSVMEK IKDGKFLEFASVHGNLYGTS+EAVE V D+GKRCILDIDVQGA
Sbjct: 179 KDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYGTSIEAVEVVTDSGKRCILDIDVQGA 238
Query: 237 RSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDH 296
RSVRAS L+AIFIFICPPSMEELE+RLRARGTETE+QI KRLRNA+ E++QGKSSGIFDH
Sbjct: 239 RSVRASSLEAIFIFICPPSMEELEKRLRARGTETEEQIQKRLRNAEAELEQGKSSGIFDH 298
Query: 297 ILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVANKVIIKCGAAEG- 355
ILYND LEECY+NLKK LGLDG A N +P+GI+LP +HSVSK+ +K+II+ G
Sbjct: 299 ILYNDNLEECYKNLKKLLGLDGLAAVNGVEAPEGINLPKEHSVSKMDDKIIIQ---ETGE 355
Query: 356 KASKNLMVLDVSSLKGGAPGRTRGLQVYTVDSFSDGLNGVNKL 398
K S L+VLD+SSL GGAPGRTRGL V V SFSD LNG+N+
Sbjct: 356 KTSNKLIVLDLSSLNGGAPGRTRGLDVDAVKSFSDFLNGINQS 398
|
Length = 398 |
| >gnl|CDD|213788 TIGR03263, guanyl_kin, guanylate kinase | Back alignment and domain information |
|---|
Score = 256 bits (657), Expect = 3e-85
Identities = 91/179 (50%), Positives = 116/179 (64%), Gaps = 4/179 (2%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
+VI+GPSG GK TL+ L++E P+ FS+S TTR PR E DGV Y F + E+
Sbjct: 1 LLIVISGPSGAGKSTLVKALLEEDPN-LKFSISATTRKPRPGEVDGVDYFFVSKEEFEEM 59
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICP 253
IK G+FLE+A VHGN YGT VE AGK +L+IDVQGAR V+ DA+ IFI P
Sbjct: 60 IKAGEFLEWAEVHGNYYGTPKSPVEEALAAGKDVLLEIDVQGARQVKKKFPDAVSIFILP 119
Query: 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKK 312
PS+EELE RLR RGT++E+ I +RL AK+EI FD+++ ND LE+ E LK
Sbjct: 120 PSLEELERRLRKRGTDSEEVIERRLAKAKKEIAHADE---FDYVIVNDDLEKAVEELKS 175
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP [Purines, pyrimidines, nucleosides, and nucleotides, Nucleotide and nucleoside interconversions]. Length = 179 |
| >gnl|CDD|234719 PRK00300, gmk, guanylate kinase; Provisional | Back alignment and domain information |
|---|
Score = 250 bits (641), Expect = 3e-82
Identities = 85/177 (48%), Positives = 114/177 (64%), Gaps = 4/177 (2%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIK 195
+V++GPSG GK TL+ L++ P++ SVS TTRAPR E DGV Y F + E+ I+
Sbjct: 8 IVLSGPSGAGKSTLVKALLERDPNLQ-LSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIE 66
Query: 196 DGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPS 255
+G+FLE+A V GN YGT VE AGK +L+ID QGAR V+ DA+ IFI PPS
Sbjct: 67 NGEFLEWAEVFGNYYGTPRSPVEEALAAGKDVLLEIDWQGARQVKKKMPDAVSIFILPPS 126
Query: 256 MEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKK 312
+EELE RLR RGT++E+ I +RL A+EEI +D+++ ND L+ E LK
Sbjct: 127 LEELERRLRGRGTDSEEVIARRLAKAREEIAHASE---YDYVIVNDDLDTALEELKA 180
|
Length = 205 |
| >gnl|CDD|223272 COG0194, Gmk, Guanylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Score = 231 bits (592), Expect = 3e-75
Identities = 90/189 (47%), Positives = 116/189 (61%), Gaps = 10/189 (5%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
+V++GPSGVGK TL+ L+++ FSVS TTR PR E DGV Y F E+
Sbjct: 5 LLIVLSGPSGVGKSTLVKALLEDDK--LRFSVSATTRKPRPGEVDGVDYFFVTEEEFEEL 62
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICP 253
I+ +FLE+A HGN YGTS E VE GK ILDIDVQGA V+ +A+ IFI P
Sbjct: 63 IERDEFLEWAEYHGNYYGTSREPVEQALAEGKDVILDIDVQGALQVKKKMPNAVSIFILP 122
Query: 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLK-- 311
PS+EELE RL+ RGT++E+ I +RL NAK+EI FD+++ ND LE+ E LK
Sbjct: 123 PSLEELERRLKGRGTDSEEVIARRLENAKKEISHADE---FDYVIVNDDLEKALEELKSI 179
Query: 312 ---KHLGLD 317
+ L D
Sbjct: 180 ILAERLRRD 188
|
Length = 191 |
| >gnl|CDD|214504 smart00072, GuKc, Guanylate kinase homologues | Back alignment and domain information |
|---|
Score = 221 bits (566), Expect = 1e-71
Identities = 89/176 (50%), Positives = 115/176 (65%), Gaps = 3/176 (1%)
Query: 142 SGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLE 201
SGVGKGTL++ L++E P F VSHTTR PR E +GV YHF + E IK G FLE
Sbjct: 1 SGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSKEEFEDDIKSGLFLE 60
Query: 202 FASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEE 261
+ GN YGTS E + VA+ GK C+LDID QG + +R + L I IFI PPS EELE
Sbjct: 61 WGEYEGNYYGTSKETIRQVAEKGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELER 120
Query: 262 RLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD 317
RLR RGTET ++I KRL A++E ++ +FD+++ ND LE+ YE LK+ L +
Sbjct: 121 RLRQRGTETSERIQKRLAAAQKEAQE---YHLFDYVIVNDDLEDAYEELKEILEAE 173
|
Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions. Length = 174 |
| >gnl|CDD|201353 pfam00625, Guanylate_kin, Guanylate kinase | Back alignment and domain information |
|---|
Score = 212 bits (542), Expect = 6e-68
Identities = 86/178 (48%), Positives = 123/178 (69%), Gaps = 3/178 (1%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
+P+V++GPSGVGK + L+ E+P FG+SVSHTTR PR E DG YHF + ME
Sbjct: 3 RPIVLSGPSGVGKSHIKKALLDEYPEKFGYSVSHTTRPPRPGEVDGKDYHFVSKEEMEND 62
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICP 253
I +FLE+A +GN YGTS EA+E +A++GK CILD+D+QG + +R + L I +FI P
Sbjct: 63 ISANEFLEYAEFNGNYYGTSKEAIEQIAESGKICILDVDIQGVKQLRKAELSPISVFIKP 122
Query: 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLK 311
PS++ L+ RL+ RGTE E++I KR+ A++E + +FD+I+ ND L+E Y+ LK
Sbjct: 123 PSLKVLQRRLKRRGTEQEEKINKRMEAAEQEFQH---YALFDYIIVNDDLDEAYKKLK 177
|
Length = 183 |
| >gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2 | Back alignment and domain information |
|---|
Score = 205 bits (525), Expect = 6e-66
Identities = 78/177 (44%), Positives = 97/177 (54%), Gaps = 40/177 (22%)
Query: 135 PVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAI 194
+V++GPSGVGK TL+ L++EF FGFSVSHTTR PR E DGV YHF + E+ I
Sbjct: 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLI 60
Query: 195 KDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPP 254
++G+FLE+A HGN YGTS AVE GK IL+IDVQGAR V+ S DA+ IFI PP
Sbjct: 61 ENGEFLEWAEFHGNYYGTSKAAVEEALAEGKIVILEIDVQGARQVKKSYPDAVSIFILPP 120
Query: 255 SMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLK 311
D+++ ND LE+ YE LK
Sbjct: 121 ----------------------------------------DYVIVNDDLEKAYEELK 137
|
7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. Length = 137 |
| >gnl|CDD|173199 PRK14737, gmk, guanylate kinase; Provisional | Back alignment and domain information |
|---|
Score = 158 bits (400), Expect = 8e-47
Identities = 75/183 (40%), Positives = 106/183 (57%), Gaps = 5/183 (2%)
Query: 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVM 190
K +I+ +G GK T+I L++E P FS+S TTRAPR +++G Y F
Sbjct: 2 ASPKLFIISSVAGGGKSTIIQALLEEHPDFL-FSISCTTRAPRPGDEEGKTYFFLTIEEF 60
Query: 191 EKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRAS-PLDAIFI 249
+K I DG+FLE+A VH N YGT +E G+ I+DIDVQGA+ ++ P + I
Sbjct: 61 KKGIADGEFLEWAEVHDNYYGTPKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTI 120
Query: 250 FICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYEN 309
FI PPS EE EERL RGT++E+ I KR+ N E+ + FD+ + ND LE+ +
Sbjct: 121 FIEPPSEEEWEERLIHRGTDSEESIEKRIENGIIELDEANE---FDYKIINDDLEDAIAD 177
Query: 310 LKK 312
L+
Sbjct: 178 LEA 180
|
Length = 186 |
| >gnl|CDD|237809 PRK14738, gmk, guanylate kinase; Provisional | Back alignment and domain information |
|---|
Score = 153 bits (388), Expect = 9e-45
Identities = 72/177 (40%), Positives = 103/177 (58%), Gaps = 8/177 (4%)
Query: 133 EKP--VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVM 190
KP VVI+GPSGVGK ++ M+E F F V+ TTR R E DGV YHF
Sbjct: 11 AKPLLVVISGPSGVGKDAVL-ARMRERKLPFHFVVTATTRPKRPGEIDGVDYHFVTPEEF 69
Query: 191 EKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIF 250
+ I + LE+A V+GN YG V +G+ I+ +DVQGA S++ +A+FIF
Sbjct: 70 REMISQNELLEWAEVYGNYYGVPKAPVRQALASGRDVIVKVDVQGAASIKRLVPEAVFIF 129
Query: 251 ICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYN--DKLEE 305
+ PPSM+EL RL R TE+ +++ +RL A E++Q FD+++ N D+L+E
Sbjct: 130 LAPPSMDELTRRLELRRTESPEELERRLATAPLELEQLPE---FDYVVVNPEDRLDE 183
|
Length = 206 |
| >gnl|CDD|226232 COG3709, COG3709, Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 5e-07
Identities = 46/155 (29%), Positives = 61/155 (39%), Gaps = 20/155 (12%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSH--TTRAPRAMEKDGVHYHFTERSVMEKA 193
+ + GPSG GK TL+ TR A +D H +E +A
Sbjct: 8 IAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGED--HDALSEAEFNTRA 65
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSV------RASPLDAI 247
G F HG YG E +A AG + V G+R+V R L +
Sbjct: 66 -GQGAFALSWQAHGLSYGIPAEIDLWLA-AG----DVVLVNGSRAVLPQARRRYPQLLVV 119
Query: 248 FIFICPPSMEELEERLRARGTETEDQILKRL-RNA 281
I S E L +RL RG E+ ++IL RL R A
Sbjct: 120 CITA---SPEVLAQRLAERGRESREEILARLARAA 151
|
Length = 192 |
| >gnl|CDD|236648 PRK10078, PRK10078, ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Score = 47.8 bits (114), Expect = 1e-06
Identities = 40/149 (26%), Positives = 62/149 (41%), Gaps = 12/149 (8%)
Query: 140 GPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKF 199
GPSG GK +L++ L + + + + TR A ++ H +E+ +A F
Sbjct: 9 GPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAGSEN--HIALSEQEFFTRA-GQNLF 65
Query: 200 LEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARS----VRASPLDAIFIFICPPS 255
+G YG +E ++ AG D+ V G+R+ RA A+ S
Sbjct: 66 ALSWHANGLYYGVGIE-IDLWLHAG----FDVLVNGSRAHLPQARARYQSALLPVCLQVS 120
Query: 256 MEELEERLRARGTETEDQILKRLRNAKEE 284
E L +RL RG E +I RL A
Sbjct: 121 PEILRQRLENRGRENASEINARLARAARY 149
|
Length = 186 |
| >gnl|CDD|233821 TIGR02322, phosphon_PhnN, phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Score = 44.3 bits (105), Expect = 2e-05
Identities = 41/155 (26%), Positives = 61/155 (39%), Gaps = 20/155 (12%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSH--TTRAPRAMEKDGVHYHFTERSVMEKA 193
+ + GPSG GK TL+ TR A ++ + E +
Sbjct: 4 IYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASAGGENHIALSTEE---FDHR 60
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSV------RASPLDAI 247
G F HG YG E + + AG + V G+R+V R L +
Sbjct: 61 EDGGAFALSWQAHGLSYGIPAEIDQWLE-AGD----VVVVNGSRAVLPEARQRYPNLLVV 115
Query: 248 FIFICPPSMEELEERLRARGTETEDQILKRL-RNA 281
I S + L +RL ARG E+ ++I +RL R+A
Sbjct: 116 NITA---SPDVLAQRLAARGRESREEIEERLARSA 147
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PMID:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP [Central intermediary metabolism, Phosphorus compounds]. Length = 179 |
| >gnl|CDD|222000 pfam13238, AAA_18, AAA domain | Back alignment and domain information |
|---|
Score = 37.0 bits (86), Expect = 0.004
Identities = 34/153 (22%), Positives = 52/153 (33%), Gaps = 26/153 (16%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIK 195
++ITG G GK TL KE G + + + + E +++
Sbjct: 1 ILITGTPGSGKTTLA----KELAERLGDVLRDLAKE-NGLVLELDEEITDESKRLDEDKL 55
Query: 196 DGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFI-CPP 254
+ E + G+ I ID A D +F+ + P
Sbjct: 56 AKLLDKL------------EKIIEELAEGENVI--IDGHLAELELERFKDLVFVVLRADP 101
Query: 255 SMEELEERLRARGTETEDQILKRLRNAKEEIKQ 287
EEL ERL+ RG E K N + EI +
Sbjct: 102 --EELLERLKKRGYSEE----KISENDEAEILK 128
|
Length = 128 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 399 | |||
| PLN02772 | 398 | guanylate kinase | 100.0 | |
| COG0194 | 191 | Gmk Guanylate kinase [Nucleotide transport and met | 99.97 | |
| COG1162 | 301 | Predicted GTPases [General function prediction onl | 99.97 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 99.97 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 99.97 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 99.96 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 99.95 | |
| PRK14737 | 186 | gmk guanylate kinase; Provisional | 99.95 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 99.95 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 99.95 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 99.94 | |
| PF00625 | 183 | Guanylate_kin: Guanylate kinase; InterPro: IPR0081 | 99.93 | |
| smart00072 | 184 | GuKc Guanylate kinase homologues. Active enzymes c | 99.92 | |
| PRK12288 | 347 | GTPase RsgA; Reviewed | 99.92 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 99.92 | |
| cd01854 | 287 | YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil | 99.91 | |
| PRK00098 | 298 | GTPase RsgA; Reviewed | 99.91 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 99.91 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 99.91 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 99.9 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 99.9 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 99.9 | |
| TIGR00157 | 245 | ribosome small subunit-dependent GTPase A. The Aqu | 99.9 | |
| PRK12289 | 352 | GTPase RsgA; Reviewed | 99.9 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 99.9 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 99.9 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 99.9 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 99.9 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 99.9 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 99.89 | |
| KOG0707 | 231 | consensus Guanylate kinase [Nucleotide transport a | 99.89 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 99.88 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 99.88 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 99.88 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 99.88 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 99.88 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 99.88 | |
| PRK14738 | 206 | gmk guanylate kinase; Provisional | 99.87 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 99.87 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 99.87 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 99.86 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 99.86 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 99.86 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 99.86 | |
| TIGR03263 | 180 | guanyl_kin guanylate kinase. Members of this famil | 99.86 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 99.85 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 99.85 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 99.85 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 99.85 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 99.84 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 99.84 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 99.84 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 99.84 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 99.84 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 99.84 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 99.83 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 99.83 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 99.83 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 99.83 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 99.83 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 99.83 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 99.82 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 99.82 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 99.82 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 99.82 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 99.82 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 99.82 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 99.81 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 99.81 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 99.81 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.81 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 99.81 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 99.81 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 99.81 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 99.81 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 99.81 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 99.81 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 99.81 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.8 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 99.8 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 99.8 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 99.8 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 99.8 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 99.8 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 99.8 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 99.8 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 99.8 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 99.8 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 99.8 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 99.8 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 99.8 | |
| KOG0609 | 542 | consensus Calcium/calmodulin-dependent serine prot | 99.8 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 99.8 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.8 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 99.8 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 99.79 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 99.79 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 99.79 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 99.79 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 99.79 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.79 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 99.79 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 99.79 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 99.79 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 99.79 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 99.79 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 99.79 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.79 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.79 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 99.79 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 99.78 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 99.78 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 99.78 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 99.78 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 99.78 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 99.78 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 99.78 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 99.78 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 99.78 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 99.78 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 99.78 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 99.78 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.78 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 99.78 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 99.78 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.78 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.78 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 99.78 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 99.78 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.78 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 99.77 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 99.77 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.77 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 99.77 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 99.77 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.77 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.77 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 99.77 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.77 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.77 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.77 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 99.77 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 99.77 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 99.77 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 99.77 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 99.77 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 99.76 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.76 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 99.76 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 99.76 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 99.76 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 99.76 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.76 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 99.76 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.76 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.76 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.76 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 99.76 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.76 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 99.76 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.76 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 99.76 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 99.76 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 99.76 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 99.76 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 99.76 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.76 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 99.76 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.76 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 99.75 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.75 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 99.75 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.75 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 99.75 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 99.75 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.75 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 99.75 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 99.75 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.75 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 99.75 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 99.75 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 99.75 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 99.75 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.75 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.74 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 99.74 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 99.74 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 99.74 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 99.74 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.74 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 99.74 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 99.74 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.74 | |
| cd00071 | 137 | GMPK Guanosine monophosphate kinase (GMPK, EC 2.7. | 99.74 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.74 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.74 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 99.74 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 99.74 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.74 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 99.74 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 99.74 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 99.74 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 99.74 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 99.74 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.74 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 99.73 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 99.73 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 99.73 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.73 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.73 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 99.73 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 99.73 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 99.73 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 99.73 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 99.73 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 99.73 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 99.73 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 99.73 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 99.72 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 99.72 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 99.72 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.72 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 99.72 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 99.72 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 99.72 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 99.72 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 99.72 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 99.72 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 99.72 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 99.72 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 99.71 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 99.71 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 99.71 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 99.71 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 99.71 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 99.71 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 99.71 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 99.71 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.71 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 99.71 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.7 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 99.7 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 99.7 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 99.7 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 99.7 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 99.7 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 99.7 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 99.7 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 99.7 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.7 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 99.7 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 99.7 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.7 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 99.7 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 99.7 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 99.69 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 99.69 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 99.69 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 99.69 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 99.69 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 99.68 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 99.68 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 99.68 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 99.68 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 99.68 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 99.68 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 99.68 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 99.68 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 99.68 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 99.67 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 99.67 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 99.67 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 99.67 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.67 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 99.67 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 99.67 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 99.67 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 99.67 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 99.67 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.67 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 99.67 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 99.66 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 99.66 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 99.66 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 99.66 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 99.66 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 99.66 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 99.66 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 99.66 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 99.66 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 99.65 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 99.65 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 99.65 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 99.65 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 99.65 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.65 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 99.64 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 99.64 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 99.64 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 99.64 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 99.64 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 99.64 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 99.64 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 99.64 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 99.64 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 99.64 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 99.64 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 99.63 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 99.63 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 99.63 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.63 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.63 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 99.62 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 99.62 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 99.62 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 99.61 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 99.61 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 99.61 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 99.61 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 99.61 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 99.61 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 99.61 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.6 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 99.6 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 99.6 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 99.6 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 99.6 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 99.59 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 99.59 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 99.59 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 99.59 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 99.59 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 99.59 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 99.59 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 99.59 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 99.58 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 99.58 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 99.58 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.57 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.57 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 99.57 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.56 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 99.56 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 99.56 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 99.56 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.56 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.56 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.56 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 99.55 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 99.55 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 99.54 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 99.54 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 99.54 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.54 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 99.53 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.53 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.53 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 99.53 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 99.53 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 99.52 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 99.52 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.52 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 99.52 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 99.52 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 99.51 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.48 | |
| TIGR02322 | 179 | phosphon_PhnN phosphonate metabolism protein/1,5-b | 99.47 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.47 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 99.47 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 99.46 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 99.45 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 99.45 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 99.45 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 99.44 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 99.42 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 99.42 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 99.41 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 99.41 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 99.41 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 99.39 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 99.39 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 99.38 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 99.35 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 99.33 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 99.31 | |
| COG3709 | 192 | Uncharacterized component of phosphonate metabolis | 99.29 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 99.28 | |
| PF03193 | 161 | DUF258: Protein of unknown function, DUF258; Inter | 99.25 | |
| PRK08356 | 195 | hypothetical protein; Provisional | 99.19 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.19 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 99.17 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 99.17 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 99.14 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 99.13 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 99.1 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.09 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 99.08 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 99.07 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 99.07 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 99.06 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 99.01 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 98.97 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 98.94 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 98.93 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 98.87 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 98.87 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 98.82 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 98.79 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 98.75 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 98.75 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 98.68 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 98.68 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 98.66 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 98.63 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 98.62 | |
| PRK04040 | 188 | adenylate kinase; Provisional | 98.59 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 98.56 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 98.5 | |
| PRK14731 | 208 | coaE dephospho-CoA kinase; Provisional | 98.49 | |
| cd01857 | 141 | HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to t | 98.49 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 98.46 | |
| TIGR01360 | 188 | aden_kin_iso1 adenylate kinase, isozyme 1 subfamil | 98.43 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 98.42 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 98.4 | |
| cd01849 | 155 | YlqF_related_GTPase YlqF-related GTPases. These pr | 98.4 | |
| cd01858 | 157 | NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protei | 98.39 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 98.39 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 98.36 | |
| KOG0708 | 359 | consensus Membrane-associated guanylate kinase MAG | 98.35 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 98.33 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 98.33 | |
| PRK00081 | 194 | coaE dephospho-CoA kinase; Reviewed | 98.29 | |
| cd00227 | 175 | CPT Chloramphenicol (Cm) phosphotransferase (CPT). | 98.29 | |
| PRK00091 | 307 | miaA tRNA delta(2)-isopentenylpyrophosphate transf | 98.26 | |
| PRK14530 | 215 | adenylate kinase; Provisional | 98.26 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.25 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 98.25 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 98.14 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 98.14 | |
| PRK14527 | 191 | adenylate kinase; Provisional | 98.13 | |
| PRK14526 | 211 | adenylate kinase; Provisional | 98.12 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 98.11 | |
| PRK14531 | 183 | adenylate kinase; Provisional | 98.1 | |
| PRK14732 | 196 | coaE dephospho-CoA kinase; Provisional | 98.1 | |
| PLN02422 | 232 | dephospho-CoA kinase | 98.1 | |
| PRK00698 | 205 | tmk thymidylate kinase; Validated | 98.08 | |
| PTZ00451 | 244 | dephospho-CoA kinase; Provisional | 98.07 | |
| PRK06762 | 166 | hypothetical protein; Provisional | 98.07 | |
| PRK14730 | 195 | coaE dephospho-CoA kinase; Provisional | 98.06 | |
| PLN02674 | 244 | adenylate kinase | 98.05 | |
| PRK14733 | 204 | coaE dephospho-CoA kinase; Provisional | 98.05 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 98.03 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 98.03 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 98.01 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 98.0 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 97.98 | |
| cd01672 | 200 | TMPK Thymidine monophosphate kinase (TMPK), also k | 97.97 | |
| cd01855 | 190 | YqeH YqeH. YqeH is an essential GTP-binding protei | 97.95 | |
| TIGR01359 | 183 | UMP_CMP_kin_fam UMP-CMP kinase family. This subfam | 97.93 | |
| PRK13808 | 333 | adenylate kinase; Provisional | 97.93 | |
| PRK14528 | 186 | adenylate kinase; Provisional | 97.93 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 97.92 | |
| TIGR01351 | 210 | adk adenylate kinases. Adenylate kinase (EC 2.7.4. | 97.91 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 97.9 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 97.86 | |
| PRK05480 | 209 | uridine/cytidine kinase; Provisional | 97.86 | |
| COG1102 | 179 | Cmk Cytidylate kinase [Nucleotide transport and me | 97.85 | |
| PRK01184 | 184 | hypothetical protein; Provisional | 97.83 | |
| cd01859 | 156 | MJ1464 MJ1464. This family represents archaeal GTP | 97.83 | |
| PLN02459 | 261 | probable adenylate kinase | 97.82 | |
| PRK11545 | 163 | gntK gluconate kinase 1; Provisional | 97.82 | |
| PRK14734 | 200 | coaE dephospho-CoA kinase; Provisional | 97.81 | |
| PRK03846 | 198 | adenylylsulfate kinase; Provisional | 97.81 | |
| PRK02496 | 184 | adk adenylate kinase; Provisional | 97.8 | |
| PLN02200 | 234 | adenylate kinase family protein | 97.79 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 97.78 | |
| PRK14532 | 188 | adenylate kinase; Provisional | 97.78 | |
| KOG3220 | 225 | consensus Similar to bacterial dephospho-CoA kinas | 97.78 | |
| cd04466 | 68 | S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family ( | 97.77 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 97.77 | |
| TIGR01313 | 163 | therm_gnt_kin carbohydrate kinase, thermoresistant | 97.75 | |
| PRK13796 | 365 | GTPase YqeH; Provisional | 97.75 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 97.75 | |
| PF13671 | 143 | AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1 | 97.73 | |
| PRK00279 | 215 | adk adenylate kinase; Reviewed | 97.73 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 97.71 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 97.7 | |
| PRK12338 | 319 | hypothetical protein; Provisional | 97.68 | |
| COG0563 | 178 | Adk Adenylate kinase and related kinases [Nucleoti | 97.68 | |
| TIGR00152 | 188 | dephospho-CoA kinase. This model produces scores i | 97.67 | |
| PRK13974 | 212 | thymidylate kinase; Provisional | 97.66 | |
| TIGR01526 | 325 | nadR_NMN_Atrans nicotinamide-nucleotide adenylyltr | 97.65 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 97.64 | |
| PRK05541 | 176 | adenylylsulfate kinase; Provisional | 97.62 | |
| PRK13973 | 213 | thymidylate kinase; Provisional | 97.62 | |
| PRK08233 | 182 | hypothetical protein; Provisional | 97.62 | |
| PRK00889 | 175 | adenylylsulfate kinase; Provisional | 97.61 | |
| PLN02318 | 656 | phosphoribulokinase/uridine kinase | 97.59 | |
| cd02022 | 179 | DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.2 | 97.58 |
| >PLN02772 guanylate kinase | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-63 Score=487.66 Aligned_cols=393 Identities=76% Similarity=1.198 Sum_probs=362.3
Q ss_pred CCCCCceeeccccCCCCcCCcceecccCCCCCceeccEEEEEec-CCe---eEEEEeeeCCCceEEcccccCCCCCCCCC
Q 015825 1 MGEAPAFIVDNLQNGNGFSNGFSLKSRDCETTTVIGDKTYVIAG-SDE---SIGVKIYDRSTGNWLIPAVRGIEPRPCKG 76 (399)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~vGD~v~~~~~-~~~---~~i~~i~~r~~~~l~rp~~an~~~~~~p~ 76 (399)
|||||+|+||+++++ ++|||++|++...+.+++||++++..+ ++. ...+.|++...+.|.+|.|.+..|.++-+
T Consensus 1 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~G 78 (398)
T PLN02772 1 MGEAPAFFVDHLENG--YTNGFGVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKG 78 (398)
T ss_pred CCCCCceeeechhhc--cccCccCCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCc
Confidence 999999999999988 999999999999999999999999863 233 35888999989999999999999999999
Q ss_pred CCccCccccchhhhhccCCCceEEEEeCCChHHHHHHHHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 77 HSAVLLNEDRILVIKKGSSSDDCLWFLEVDTPYVREQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 77 ~~~~~l~~dr~L~~~~~~~~~~~i~~~k~D~~~~~~l~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
++..++++||+||+.+....+.+|||.++|+++++++.+.+|.+|+.++....+..+++++|+||||||||||++.|...
T Consensus 79 hSa~v~~~~rilv~~~~~~~~~~~w~l~~~t~~~~~~~~~~~~eV~~~~~~~~~~~~k~iVlsGPSGvGKsTL~~~L~~~ 158 (398)
T PLN02772 79 YSAVVLNKDRILVIKKGSAPDDSIWFLEVDTPFVREQKKLLGTEVVAWSKGVRGNAEKPIVISGPSGVGKGTLISMLMKE 158 (398)
T ss_pred ceEEEECCceEEEEeCCCCCccceEEEEcCCHHHHhhcccccceeeecccCCCCCCCcEEEEECCCCCCHHHHHHHHhhh
Confidence 99999999999999999999999999999999999888999999999987666667899999999999999999999998
Q ss_pred cCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccCCcHHHHHHHHHcCCceEEecchhhH
Q 015825 157 FPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGA 236 (399)
Q Consensus 157 ~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~ 236 (399)
.+..++..++||||+++..+.++..|+|.+.+.|..++..+.|+|+..+.+++||++++.++..+++|+.+++++|+++.
T Consensus 159 ~p~~~~~~vshTTR~pR~gE~dG~dY~Fvs~eeFe~~i~~g~FlE~~e~~Gn~YGTsk~~V~~vl~~Gk~vILdLD~qGa 238 (398)
T PLN02772 159 FPSMFGFSVSHTTRAPREMEKDGVHYHFTERSVMEKEIKDGKFLEFASVHGNLYGTSIEAVEVVTDSGKRCILDIDVQGA 238 (398)
T ss_pred ccccccccccccCCCCcccccCCceEeeCCHHHHHHHHHhCccceeeeecCccccccHHHHHHHHHhCCcEEEeCCHHHH
Confidence 87778889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 237 RSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 237 ~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
+.++...+..+++|+.+|+++.|.+|+.+|+..+++++++||+.+..+++.....+.||++|+|+|+++|++.+..++.+
T Consensus 239 r~Lr~~~l~~v~IFI~PPSlEeLe~RL~~RGteseE~I~kRL~~A~~Ei~~~~~~~~fD~vIvNDdLe~A~~~L~~iL~~ 318 (398)
T PLN02772 239 RSVRASSLEAIFIFICPPSMEELEKRLRARGTETEEQIQKRLRNAEAELEQGKSSGIFDHILYNDNLEECYKNLKKLLGL 318 (398)
T ss_pred HHHHHhcCCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhccccCCCCEEEECCCHHHHHHHHHHHHhh
Confidence 99998778889999999999999999999999999999999999877776544456799999999999999999999988
Q ss_pred cCCeeeecCCCccccCCCcchhhhcccCeEEEEecCCc-cccccceeeeecccccCCCCCcccceEEEEeeccCCCCCCC
Q 015825 317 DGSIATNHQTSPKGIDLPADHSVSKVANKVIIKCGAAE-GKASKNLMVLDVSSLKGGAPGRTRGLQVYTVDSFSDGLNGV 395 (399)
Q Consensus 317 ~~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (399)
.+..........+.+++|..|.|.++++++.++ .+ .+..++++.+|+++|.+++||||||+.++++++|||++||+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 395 (398)
T PLN02772 319 DGLAAVNGVEAPEGINLPKEHSVSKMDDKIIIQ---ETGEKTSNKLIVLDLSSLNGGAPGRTRGLDVDAVKSFSDFLNGI 395 (398)
T ss_pred cCccccccccccccccCCcccceeecCCceEec---ccccccccceEEEEehhccCCCCCcccceEEEeeechhhcccCc
Confidence 876655556667788999999999999999888 23 67888999999999999999999999999999999999999
Q ss_pred CCC
Q 015825 396 NKL 398 (399)
Q Consensus 396 ~~~ 398 (399)
||+
T Consensus 396 ~~~ 398 (398)
T PLN02772 396 NQS 398 (398)
T ss_pred CCC
Confidence 996
|
|
| >COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.1e-31 Score=232.30 Aligned_cols=181 Identities=49% Similarity=0.737 Sum_probs=171.2
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYG 211 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g 211 (399)
+|.+++|.||||+|||||+++|.... ....++++|||++|+++.+|+.|+|.+.+.|..++..+.|+||..+.+++||
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~--~l~~SVS~TTR~pR~gEv~G~dY~Fvs~~EF~~~i~~~~fLE~a~~~gnyYG 80 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD--KLRFSVSATTRKPRPGEVDGVDYFFVTEEEFEELIERDEFLEWAEYHGNYYG 80 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhc--CeEEEEEeccCCCCCCCcCCceeEeCCHHHHHHHHhcCCcEEEEEEcCCccc
Confidence 68999999999999999999999877 4566999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCC
Q 015825 212 TSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSS 291 (399)
Q Consensus 212 ~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~ 291 (399)
++...++..+..|..+++|++.+|+++++...+..+++|+.+|+++.|.+|+.+|+.++.+.+.+||..+..++.++.
T Consensus 81 T~~~~ve~~~~~G~~vildId~qGa~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rgtds~e~I~~Rl~~a~~Ei~~~~-- 158 (191)
T COG0194 81 TSREPVEQALAEGKDVILDIDVQGALQVKKKMPNAVSIFILPPSLEELERRLKGRGTDSEEVIARRLENAKKEISHAD-- 158 (191)
T ss_pred CcHHHHHHHHhcCCeEEEEEehHHHHHHHHhCCCeEEEEEcCCCHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999988753
Q ss_pred CcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 292 GIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 292 ~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
.||.|++|+|++.|+..+..++...
T Consensus 159 -~fdyvivNdd~e~a~~~l~~ii~ae 183 (191)
T COG0194 159 -EFDYVIVNDDLEKALEELKSIILAE 183 (191)
T ss_pred -hCCEEEECccHHHHHHHHHHHHHHH
Confidence 5899999999999999998877654
|
|
| >COG1162 Predicted GTPases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.8e-32 Score=255.81 Aligned_cols=193 Identities=24% Similarity=0.262 Sum_probs=156.3
Q ss_pred CCCCceeccEEEEEecCCeeEEEEeeeCCCceEEcccccCCC------CCCCCCCCccCccccchhhhhccCCCceEEEE
Q 015825 29 CETTTVIGDKTYVIAGSDESIGVKIYDRSTGNWLIPAVRGIE------PRPCKGHSAVLLNEDRILVIKKGSSSDDCLWF 102 (399)
Q Consensus 29 ~~~~~~vGD~v~~~~~~~~~~i~~i~~r~~~~l~rp~~an~~------~~~~p~~~~~~l~~dr~L~~~~~~~~~~~i~~ 102 (399)
.+..|+|||+|.|+.....|+|++|+|| ||.|.||++||+| ++.+|+||+.+| ||||+++|..+|+|+|++
T Consensus 41 ~~~~~vVGD~V~~~~~~~~g~I~~i~~R-kn~L~Rp~v~n~d~~iiIvs~~~P~~~~~~l--dR~Lv~ae~~gi~pvIvl 117 (301)
T COG1162 41 KDLKPVVGDRVVFEDENNNGVIEKILPR-KNVLIRPPVANNDQAIIVVSLVDPDFNTNLL--DRYLVLAEAGGIEPVIVL 117 (301)
T ss_pred cCccccccCeEEEecCCCcceEEEEecc-cCceeCCcccccceEEEEEeccCCCCCHHHH--HHHHHHHHHcCCcEEEEE
Confidence 3788999999999975445999999999 9999999999988 888999999999 999999999999999999
Q ss_pred eCCCh---HHH-----HHHHHHhCCeEEEeccC-c-------cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceee
Q 015825 103 LEVDT---PYV-----REQKKVVGAEVVAWSKG-V-------IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS 166 (399)
Q Consensus 103 ~k~D~---~~~-----~~l~~~~g~~v~~~s~~-~-------~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~ 166 (399)
||+|. +.. ....+.+||+++.+|.. . ..++|++++|+|+||+|||||+|.|.+.....+| +|+
T Consensus 118 nK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~~~l~~~l~~~~svl~GqSGVGKSSLiN~L~p~~~~~t~-eIS 196 (301)
T COG1162 118 NKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGLEELAELLAGKITVLLGQSGVGKSTLINALLPELNQKTG-EIS 196 (301)
T ss_pred EccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccHHHHHHHhcCCeEEEECCCCCcHHHHHHhhCchhhhhhh-hhc
Confidence 99993 111 12347899999999954 1 2369999999999999999999999998877777 665
Q ss_pred -------ecCCCccccccCCeeEEecCh-----HH--HHHHHhhhhhHHHHHHhccc-------cCCcHHHHHHHHHcCC
Q 015825 167 -------HTTRAPRAMEKDGVHYHFTER-----SV--MEKAIKDGKFLEFASVHGNL-------YGTSVEAVEAVADAGK 225 (399)
Q Consensus 167 -------~ttr~~~~~~~~~i~yvfq~~-----~l--f~~~~~~~~~~E~~~~~~~~-------~g~~~~~i~~~~~~g~ 225 (399)
|||++.+.....+.|++..+| ++ .........|.|+..+.+.| ...|.|.++++++.+.
T Consensus 197 ~~~~rGkHTTt~~~l~~l~~gG~iiDTPGf~~~~l~~~~~e~l~~~F~ef~~~~~~CkFr~C~H~~EPgCav~~av~~g~ 276 (301)
T COG1162 197 EKLGRGRHTTTHVELFPLPGGGWIIDTPGFRSLGLAHLEPEDLVQAFPEFAELARQCKFRDCTHTHEPGCAVKAAVEEGE 276 (301)
T ss_pred ccCCCCCCccceEEEEEcCCCCEEEeCCCCCccCcccCCHHHHHHHhHHHHHHhcCCCCCCCCCCCCCCcHHHHHHHcCC
Confidence 899999888886567774443 22 11222334788888887665 4578899998888765
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2e-32 Score=251.93 Aligned_cols=221 Identities=14% Similarity=0.172 Sum_probs=182.4
Q ss_pred HHHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC----ccccccCCeeEEecChH
Q 015825 113 QKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTERS 188 (399)
Q Consensus 113 l~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~~i~yvfq~~~ 188 (399)
+.+.++......+.+....+|++++|+|||||||||+++||.+++.|+.| .+...... .....++++||+.|...
T Consensus 7 vsk~y~~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G-~I~i~g~~i~~~d~~~LRr~IGYviQqig 85 (309)
T COG1125 7 VSKRYGNKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSG-EILIDGEDISDLDPVELRRKIGYVIQQIG 85 (309)
T ss_pred eehhcCCceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCc-eEEECCeecccCCHHHHHHhhhhhhhhcc
Confidence 44556655555555566779999999999999999999999999999999 55542211 11223456999999999
Q ss_pred HHHHHHhhhhhHHHHHHhccccCCcHHHHHHHHHcCCceEEecchhhHHH--------HHcCCcceeEEEEcCCChHHHH
Q 015825 189 VMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARS--------VRASPLDAIFIFICPPSMEELE 260 (399)
Q Consensus 189 lf~~~~~~~~~~E~~~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~--------l~~~~~~~~~ili~~P~lllLD 260 (399)
+||++ ++.||+.+...+.+.+++.+++.+.+ +..+++++|..+.. .++|+...+.+++.+|++++||
T Consensus 86 LFPh~----Tv~eNIa~VP~L~~w~k~~i~~r~~E-Ll~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~ilLMD 160 (309)
T COG1125 86 LFPHL----TVAENIATVPKLLGWDKERIKKRADE-LLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMD 160 (309)
T ss_pred cCCCc----cHHHHHHhhhhhcCCCHHHHHHHHHH-HHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCeEeec
Confidence 99999 99999999999999999888877655 33345566543222 2456667777999999999999
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 261 ERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 261 Epl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
||++++||.++.++|+.+.++++++.. |+|+||||++||++..++++.+.+|.++|.++|.+++.+|++++|+
T Consensus 161 EPFgALDpI~R~~lQ~e~~~lq~~l~k-------TivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~FV~ 233 (309)
T COG1125 161 EPFGALDPITRKQLQEEIKELQKELGK-------TIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFVE 233 (309)
T ss_pred CCccccChhhHHHHHHHHHHHHHHhCC-------EEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHHHH
Confidence 999999999999999999999988765 9999999999999999999999999999999999999999999999
Q ss_pred cccCeE
Q 015825 341 KVANKV 346 (399)
Q Consensus 341 ~~~~~~ 346 (399)
.+.+.-
T Consensus 234 ~f~g~~ 239 (309)
T COG1125 234 DFFGES 239 (309)
T ss_pred HHhccc
Confidence 876543
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.7e-31 Score=259.86 Aligned_cols=225 Identities=16% Similarity=0.123 Sum_probs=175.9
Q ss_pred HHHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--cccccCCeeEEecChHHH
Q 015825 113 QKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 113 l~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~~i~yvfq~~~lf 190 (399)
+.+.+|......+.+....+|++++|+|||||||||++++|+|+..|..| .|....+.. -+.+.+++++|||++.+|
T Consensus 11 v~k~yg~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G-~I~l~G~~i~~lpp~kR~ig~VFQ~YALF 89 (352)
T COG3842 11 VSKSFGDFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSG-EILLDGEDITDVPPEKRPIGMVFQSYALF 89 (352)
T ss_pred eeeecCCeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECCCCChhhcccceeecCcccC
Confidence 44667744444445566779999999999999999999999999999999 555322111 223345699999999999
Q ss_pred HHHHhhhhhHHHHHHhccccC-CcHHHHHHHHHcCCceE-----EecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHH
Q 015825 191 EKAIKDGKFLEFASVHGNLYG-TSVEAVEAVADAGKRCI-----LDIDVQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (399)
Q Consensus 191 ~~~~~~~~~~E~~~~~~~~~g-~~~~~i~~~~~~g~~~v-----ldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~ 264 (399)
|+| ++.+|+.|.....+ .+.+++.+.+.+.+..+ .+--|..+...++|++..+.+|+..|.+++||||++
T Consensus 90 PHl----tV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLLLDEPlS 165 (352)
T COG3842 90 PHM----TVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLLLDEPLS 165 (352)
T ss_pred CCC----cHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhhhcCccc
Confidence 999 99999999877544 34454555554432221 111222223335667777889999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccC
Q 015825 265 ARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVAN 344 (399)
Q Consensus 265 ~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~ 344 (399)
++|..-+++++..+++++++++ .|+|+||||.+||+...+++++|++|.+.|.++|.++|..|.+.+|+.+.+
T Consensus 166 aLD~kLR~~mr~Elk~lq~~~g-------iT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~~fVA~FiG 238 (352)
T COG3842 166 ALDAKLREQMRKELKELQRELG-------ITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRFVADFIG 238 (352)
T ss_pred chhHHHHHHHHHHHHHHHHhcC-------CeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcchHHHHHHhC
Confidence 9999999999999999887753 499999999999999999999999999999999999999999999999877
Q ss_pred eEEEE
Q 015825 345 KVIIK 349 (399)
Q Consensus 345 ~~~~~ 349 (399)
...+-
T Consensus 239 ~~N~l 243 (352)
T COG3842 239 ESNIF 243 (352)
T ss_pred cceee
Confidence 65543
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.8e-31 Score=258.41 Aligned_cols=225 Identities=16% Similarity=0.136 Sum_probs=180.9
Q ss_pred HHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--ccccCCeeEEecChHHHH
Q 015825 114 KKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVME 191 (399)
Q Consensus 114 ~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~~i~yvfq~~~lf~ 191 (399)
.+.+|...+..+.+.....|++++|+||||||||||+|+|+|+..+..| .+....+... ..+.+++++|||++.+||
T Consensus 10 ~K~yg~~~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G-~I~i~g~~vt~l~P~~R~iamVFQ~yALyP 88 (338)
T COG3839 10 RKSFGSFEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSG-EILIDGRDVTDLPPEKRGIAMVFQNYALYP 88 (338)
T ss_pred EEEcCCceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECCCCChhHCCEEEEeCCccccC
Confidence 3455543223334455679999999999999999999999999999999 6654222111 222356999999999999
Q ss_pred HHHhhhhhHHHHHHhccccCCcHHHHHHHHHcC-----CceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhC
Q 015825 192 KAIKDGKFLEFASVHGNLYGTSVEAVEAVADAG-----KRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (399)
Q Consensus 192 ~~~~~~~~~E~~~~~~~~~g~~~~~i~~~~~~g-----~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~l 266 (399)
+| ++.+|+.|..+..+.+++++.+.+++. ...+++--|..+...++|+.....+++..|++.+||||++++
T Consensus 89 hm----tV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~DEPlSnL 164 (338)
T COG3839 89 HM----TVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNL 164 (338)
T ss_pred CC----cHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEecCchhHh
Confidence 99 999999999999988888877766542 222333334444445677788888999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccCeE
Q 015825 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVANKV 346 (399)
Q Consensus 267 D~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~~~ 346 (399)
|...+.+++..++++++++.. |.|++|||..||+...++++++.+|.+.|.++|.+++..|.+.+|+.+.+..
T Consensus 165 Da~lR~~mr~ei~~lh~~l~~-------T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n~fVA~FiG~p 237 (338)
T COG3839 165 DAKLRVLMRSEIKKLHERLGT-------TTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANLFVAGFIGSP 237 (338)
T ss_pred hHHHHHHHHHHHHHHHHhcCC-------cEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccchhhhhhcCCh
Confidence 999999999999998887643 9999999999999999999999999999999999999999999999987755
Q ss_pred EEEe
Q 015825 347 IIKC 350 (399)
Q Consensus 347 ~~~~ 350 (399)
.++.
T Consensus 238 ~mn~ 241 (338)
T COG3839 238 PMNF 241 (338)
T ss_pred hhcC
Confidence 4443
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-28 Score=231.84 Aligned_cols=219 Identities=15% Similarity=0.127 Sum_probs=176.6
Q ss_pred HHHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC--------ccccccCCeeEEe
Q 015825 113 QKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA--------PRAMEKDGVHYHF 184 (399)
Q Consensus 113 l~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~--------~~~~~~~~i~yvf 184 (399)
+.+..|.-+=..+.+.....|++++|+|-||||||||+++|.++.+|+.| .+....+. .+...++.++++|
T Consensus 34 i~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G-~ilv~g~di~~~~~~~Lr~~Rr~~~sMVF 112 (386)
T COG4175 34 ILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG-EILVDGKDIAKLSAAELRELRRKKISMVF 112 (386)
T ss_pred HHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc-eEEECCcchhcCCHHHHHHHHhhhhhhhh
Confidence 34667765555556677789999999999999999999999999999999 55432221 1233445689999
Q ss_pred cChHHHHHHHhhhhhHHHHHHhccccCCcHHHHHHHHHcCCceE-----EecchhhHHHHHcCCcceeEEEEcCCChHHH
Q 015825 185 TERSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCI-----LDIDVQGARSVRASPLDAIFIFICPPSMEEL 259 (399)
Q Consensus 185 q~~~lf~~~~~~~~~~E~~~~~~~~~g~~~~~i~~~~~~g~~~v-----ldld~~g~~~l~~~~~~~~~ili~~P~lllL 259 (399)
|++.++|+. ++++|..|.....|.++++.++...+++..+ -+--|..+....+|++..+.+|+.+|++++|
T Consensus 113 Q~FaLlPhr----tVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLM 188 (386)
T COG4175 113 QSFALLPHR----TVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLM 188 (386)
T ss_pred hhhccccch----hHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEe
Confidence 999999999 9999999999999999888777665543222 0001111111234555666799999999999
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhh
Q 015825 260 EERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSV 339 (399)
Q Consensus 260 DEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v 339 (399)
||+++++||.-+.++|..|.++++++.. |+|+++||++||+..-++|..|.+|.++|.|+|++++..|++..|
T Consensus 189 DEaFSALDPLIR~~mQdeLl~Lq~~l~K-------TIvFitHDLdEAlriG~rIaimkdG~ivQ~Gtp~eIl~~PAndYV 261 (386)
T COG4175 189 DEAFSALDPLIRTEMQDELLELQAKLKK-------TIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNPANDYV 261 (386)
T ss_pred cCchhhcChHHHHHHHHHHHHHHHHhCC-------eEEEEecCHHHHHhccceEEEecCCeEEEeCCHHHHHcCccHHHH
Confidence 9999999999999999999999988765 999999999999999999999999999999999999999999988
Q ss_pred hccc
Q 015825 340 SKVA 343 (399)
Q Consensus 340 ~~~~ 343 (399)
..|.
T Consensus 262 ~~Fv 265 (386)
T COG4175 262 RDFV 265 (386)
T ss_pred HHHH
Confidence 8754
|
|
| >PRK14737 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.8e-27 Score=211.64 Aligned_cols=181 Identities=41% Similarity=0.636 Sum_probs=163.8
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYG 211 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g 211 (399)
++++++|+||||||||||++.|....+.. ...++||||+++..+.+|.+|+|.+.+.|..++..+.|+||..|.+++||
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~~~~-~~~v~~TTR~~r~gE~~G~dY~fvs~~~F~~~i~~~~f~e~~~~~g~~YG 81 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEHPDF-LFSISCTTRAPRPGDEEGKTYFFLTIEEFKKGIADGEFLEWAEVHDNYYG 81 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcCCcc-ccccCccCCCCCCCCCCCceeEeCCHHHHHHHHHcCCeEEEEEECCeeec
Confidence 57899999999999999999999877554 44789999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHcCCceEEecchhhHHHHHcCCcce-eEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccC
Q 015825 212 TSVEAVEAVADAGKRCILDIDVQGARSVRASPLDA-IFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKS 290 (399)
Q Consensus 212 ~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~-~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~ 290 (399)
++.+.+...++.|+.+++++++++++.++...+.. +.+|+.+|+.+.+.+|+..|+..+++++++++.....+...
T Consensus 82 t~~~~i~~~~~~g~~~i~d~~~~g~~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~s~e~i~~Rl~~~~~e~~~--- 158 (186)
T PRK14737 82 TPKAFIEDAFKEGRSAIMDIDVQGAKIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTDSEESIEKRIENGIIELDE--- 158 (186)
T ss_pred CcHHHHHHHHHcCCeEEEEcCHHHHHHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh---
Confidence 99999999999999999999999999999877766 78999999999999999999988999999999986554433
Q ss_pred CCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 291 SGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 291 ~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
.+.||++|+|+++++++.++.+++..
T Consensus 159 ~~~~D~vI~N~dle~a~~ql~~ii~~ 184 (186)
T PRK14737 159 ANEFDYKIINDDLEDAIADLEAIICG 184 (186)
T ss_pred hccCCEEEECcCHHHHHHHHHHHHhc
Confidence 46789999999999999999887653
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-28 Score=227.20 Aligned_cols=192 Identities=19% Similarity=0.146 Sum_probs=150.9
Q ss_pred HhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHh
Q 015825 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIK 195 (399)
Q Consensus 116 ~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~ 195 (399)
.++...+.-+.+....+|++++|+||||||||||+|+|+|+..|..| .+....++. ......++|+||++.+|||+
T Consensus 12 ~f~~~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G-~V~~~g~~v-~~p~~~~~~vFQ~~~LlPW~-- 87 (248)
T COG1116 12 SFGGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSG-EVLLDGRPV-TGPGPDIGYVFQEDALLPWL-- 87 (248)
T ss_pred EeCceEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCccc-CCCCCCEEEEeccCcccchh--
Confidence 34443444444456679999999999999999999999999999999 666655554 33345689999999999999
Q ss_pred hhhhHHHHHHhccccCCcHHHHHHHHHc-----CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 196 DGKFLEFASVHGNLYGTSVEAVEAVADA-----GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 196 ~~~~~E~~~~~~~~~g~~~~~i~~~~~~-----g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
++.+|+.+.....+.+..+.++.+.+ |+.-+.+..|..+....+|+...+.+++.+|++++||||++++|..|
T Consensus 88 --Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDEPFgALDalT 165 (248)
T COG1116 88 --TVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALT 165 (248)
T ss_pred --hHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcCCcchhhHHH
Confidence 99999998877766555444333332 33333334444445556777788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCe
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSI 320 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~ 320 (399)
++.+++.+.++.++. .+|+++||||++||+...++++.++.++
T Consensus 166 R~~lq~~l~~lw~~~-------~~TvllVTHdi~EAv~LsdRivvl~~~P 208 (248)
T COG1116 166 REELQDELLRLWEET-------RKTVLLVTHDVDEAVYLADRVVVLSNRP 208 (248)
T ss_pred HHHHHHHHHHHHHhh-------CCEEEEEeCCHHHHHhhhCEEEEecCCC
Confidence 999999999988764 3499999999999999999999999864
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.3e-28 Score=230.59 Aligned_cols=209 Identities=15% Similarity=0.143 Sum_probs=161.8
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecC---CCc-cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTT---RAP-RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~tt---r~~-~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
.....|+.++|+||||||||||+++|+|+..|..|....+.. ... .....+++||+||++.+|++| ++.+|+
T Consensus 23 l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~~R~VGfvFQ~YALF~Hm----tVa~NI 98 (345)
T COG1118 23 LDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHM----TVADNI 98 (345)
T ss_pred eeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchhhcceeEEEechhhcccc----hHHhhh
Confidence 445689999999999999999999999999999994433211 111 122234699999999999999 999999
Q ss_pred HHhccccCC--cHHHHHHHHHcCCce-----EEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHH
Q 015825 204 SVHGNLYGT--SVEAVEAVADAGKRC-----ILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILK 276 (399)
Q Consensus 204 ~~~~~~~g~--~~~~i~~~~~~g~~~-----vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~ 276 (399)
.|...+... +...++..+++.+.+ +-+--|..+...++|+...+.+++.+|++++||||+.++|..-+.++++
T Consensus 99 AFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP~QLSGGQrQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~ 178 (345)
T COG1118 99 AFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRR 178 (345)
T ss_pred hhcccccccCCChhhHHHHHHHHHHHhcccchhhcCchhcChHHHHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHH
Confidence 998765421 123333333332111 1111233333345667777789999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccCeEE
Q 015825 277 RLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVANKVI 347 (399)
Q Consensus 277 ~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~ 347 (399)
+|+++.+++ .++.|++|||++||++.+++++.+++|.+++.++|.++++.|...+|..+.+...
T Consensus 179 wLr~~~~~~-------~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~s~fV~~f~G~~n 242 (345)
T COG1118 179 WLRKLHDRL-------GVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRFVARFLGEVN 242 (345)
T ss_pred HHHHHHHhh-------CceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCCccceecccccce
Confidence 999988765 3489999999999999999999999999999999999999999999988766543
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.4e-29 Score=223.93 Aligned_cols=218 Identities=17% Similarity=0.102 Sum_probs=170.9
Q ss_pred HHHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC-----ccccccCCeeEEecCh
Q 015825 113 QKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA-----PRAMEKDGVHYHFTER 187 (399)
Q Consensus 113 l~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~-----~~~~~~~~i~yvfq~~ 187 (399)
+.|.+|...+..+.+....+|++++|+||||||||||+++|.++..+..| .|...... .....+..+|+|||++
T Consensus 8 l~K~fg~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G-~I~i~g~~~~~~~~~~~~R~~vGmVFQ~f 86 (240)
T COG1126 8 LSKSFGDKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSG-SITVDGEDVGDKKDILKLRRKVGMVFQQF 86 (240)
T ss_pred eeEEeCCeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCc-eEEECCEeccchhhHHHHHHhcCeecccc
Confidence 44667766666666667789999999999999999999999999999999 55532211 1122234689999999
Q ss_pred HHHHHHHhhhhhHHHHHHhcc-ccCCcHHHHHHHHHcC-----CceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHH
Q 015825 188 SVMEKAIKDGKFLEFASVHGN-LYGTSVEAVEAVADAG-----KRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEE 261 (399)
Q Consensus 188 ~lf~~~~~~~~~~E~~~~~~~-~~g~~~~~i~~~~~~g-----~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDE 261 (399)
.+||++ +++||+.+... ..+.+++++++...+. +..-.+.-|..+...++|+...+.+|+.+|++.++||
T Consensus 87 nLFPHl----TvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDE 162 (240)
T COG1126 87 NLFPHL----TVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDE 162 (240)
T ss_pred cccccc----hHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecC
Confidence 999999 99999987654 3677777766554332 1111222333344456777778889999999999999
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhc
Q 015825 262 RLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSK 341 (399)
Q Consensus 262 pl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~ 341 (399)
||++|||+...++.+.++.+.++ ..|.++|||++.-|.+.+++++-+.+|.++..++|.+++..|..+...+
T Consensus 163 PTSALDPElv~EVL~vm~~LA~e--------GmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~~~R~~~ 234 (240)
T COG1126 163 PTSALDPELVGEVLDVMKDLAEE--------GMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKSERTRQ 234 (240)
T ss_pred CcccCCHHHHHHHHHHHHHHHHc--------CCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCCCHHHHH
Confidence 99999999999999998887653 3499999999999999999999999999998899999999998877666
Q ss_pred cc
Q 015825 342 VA 343 (399)
Q Consensus 342 ~~ 343 (399)
+-
T Consensus 235 FL 236 (240)
T COG1126 235 FL 236 (240)
T ss_pred HH
Confidence 53
|
|
| >PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2 | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-25 Score=200.68 Aligned_cols=181 Identities=46% Similarity=0.806 Sum_probs=164.6
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYG 211 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g 211 (399)
++++++|+||||||||||++.|+..++..++..++||||+++..+.+|..|+|.+.+.|..+...+.|+|+..+.++.||
T Consensus 1 ~~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~E~~g~~y~fvs~~~f~~~~~~~~fie~~~~~g~~YG 80 (183)
T PF00625_consen 1 KRRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPGEVDGVDYHFVSKEEFERMIKAGEFIEYGEYDGNYYG 80 (183)
T ss_dssp SSSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTTS-TTTSEEE--HHHHHHHHHTTHEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCcccccCCcceEEEeechhhhhhccccEEEEeeecchhhh
Confidence 47899999999999999999999999888888999999999999999999999999999999999999999999999999
Q ss_pred CcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCC
Q 015825 212 TSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSS 291 (399)
Q Consensus 212 ~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~ 291 (399)
++...+...+..++.++++++++++..++.....++++|+.+|+...+.+++..++.++.+.+.+++..+..++..+.
T Consensus 81 t~~~~i~~~~~~gk~~il~~~~~g~~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~~~~~~i~~r~~~~~~~~~~~~-- 158 (183)
T PF00625_consen 81 TSKSAIDKVLEEGKHCILDVDPEGVKQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGDESEEEIEERLERAEKEFEHYN-- 158 (183)
T ss_dssp EEHHHHHHHHHTTTEEEEEETHHHHHHHHHCTTTEEEEEEEESSHHHHHHHHHTTTHCHHHHHHHHHHHHHHHHGGGG--
T ss_pred hccchhhHhhhcCCcEEEEccHHHHHHHHhcccCceEEEEEccchHHHHHHHhccccccHHHHHHHHHHHHHHHhHhh--
Confidence 999999999999999999999999999999999999999999999999999999998888899999999887776642
Q ss_pred CcceEEEeCCCHHHHHHHHHHhhc
Q 015825 292 GIFDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 292 ~~~t~Viv~hdleea~~~l~~ii~ 315 (399)
.||.+++|+++++++..+.+++.
T Consensus 159 -~fd~vi~n~~le~~~~~l~~ii~ 181 (183)
T PF00625_consen 159 -EFDYVIVNDDLEEAVKELKEIIE 181 (183)
T ss_dssp -GSSEEEECSSHHHHHHHHHHHHH
T ss_pred -cCCEEEECcCHHHHHHHHHHHHH
Confidence 28999999999999999998764
|
7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A .... |
| >smart00072 GuKc Guanylate kinase homologues | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.4e-24 Score=194.41 Aligned_cols=181 Identities=52% Similarity=0.867 Sum_probs=166.4
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccCC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGT 212 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g~ 212 (399)
+++++|+|||||||+|+++.|....+..++..++||||+++..+..|..|+|.+.+.|..++..+.|+|+..+.++.||+
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e~~g~dy~fvs~~ef~~~i~~g~fve~~~~~g~~YGt 81 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSREEFEDDIKSGLFLEWGEYSGNYYGT 81 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCCcCCceEEECCHHHHHHHHHcCCeEEEEEEcCcCccc
Confidence 68999999999999999999999887667888999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCC
Q 015825 213 SVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSG 292 (399)
Q Consensus 213 ~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~ 292 (399)
+...+...+..++.+++|++++++..++...+.++++|+.+|+.+.|.+|+..|+.++.+.+.+++..+..++.. .+
T Consensus 82 ~~~~i~~~~~~~~~~ild~~~~~~~~l~~~~~~~~vIfi~~~s~~~l~~rl~~R~~~~~~~i~~rl~~a~~~~~~---~~ 158 (184)
T smart00072 82 SKETIRQVAEQGKHCLLDIDPQGVKQLRKAQLYPIVIFIAPPSSEELERRLRGRGTETAERIQKRLAAAQKEAQE---YH 158 (184)
T ss_pred CHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhh---hc
Confidence 999999999999999999999999999988888899999999999999999999888999999999987766544 25
Q ss_pred cceEEEeCCCHHHHHHHHHHhhcc
Q 015825 293 IFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 293 ~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
.||.+|+|+++++++..+.+++..
T Consensus 159 ~fd~~I~n~~l~~~~~~l~~~i~~ 182 (184)
T smart00072 159 LFDYVIVNDDLEDAYEELKEILEA 182 (184)
T ss_pred cCCEEEECcCHHHHHHHHHHHHHh
Confidence 789999999999999999887753
|
Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions. |
| >PRK12288 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.4e-25 Score=217.58 Aligned_cols=199 Identities=24% Similarity=0.241 Sum_probs=150.4
Q ss_pred eecccCCCCCceeccEEEEEecC-C----eeEEEEeeeCCCceEEccc--------ccCCC-----CCCCCCCCccCccc
Q 015825 23 SLKSRDCETTTVIGDKTYVIAGS-D----ESIGVKIYDRSTGNWLIPA--------VRGIE-----PRPCKGHSAVLLNE 84 (399)
Q Consensus 23 ~~k~~~~~~~~~vGD~v~~~~~~-~----~~~i~~i~~r~~~~l~rp~--------~an~~-----~~~~p~~~~~~l~~ 84 (399)
..+.+++...|+|||||.|+..+ + .|+|++|+|| +|.|.||. |||+| .+..|.+++.+|
T Consensus 63 ~~~~~g~~~~~~vGD~V~~~~~~~~~~~~~~~I~~il~R-~n~L~R~~~~~~~q~iaANvD~vlIV~s~~p~~s~~~L-- 139 (347)
T PRK12288 63 RCNIRRTIRSLVTGDRVVWRPGKEALEGVSGVVEAVHPR-TSVLTRPDYYDGVKPIAANIDQIVIVSAVLPELSLNII-- 139 (347)
T ss_pred EEEecccCCCCCCCcEEEEEeCCCcccccceEEEEEecc-cceEECCCcccccceEEEEccEEEEEEeCCCCCCHHHH--
Confidence 45555554569999999998633 2 3899999999 89999998 69999 446799999999
Q ss_pred cchhhhhccCCCceEEEEeCCCh---HH---HHHH---HHHhCCeEEEeccC-cc-------CCCCcEEEEEcCCCCCHH
Q 015825 85 DRILVIKKGSSSDDCLWFLEVDT---PY---VREQ---KKVVGAEVVAWSKG-VI-------GNVEKPVVITGPSGVGKG 147 (399)
Q Consensus 85 dr~L~~~~~~~~~~~i~~~k~D~---~~---~~~l---~~~~g~~v~~~s~~-~~-------~~~g~~~~l~GpsG~GKS 147 (399)
||||++++..+++++|++||+|. +. ...+ .+.+||+++.+|+. .. .+.+++++|+|+||+|||
T Consensus 140 dr~L~~a~~~~i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~GideL~~~L~~ki~~~vG~sgVGKS 219 (347)
T PRK12288 140 DRYLVACETLGIEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEGLEELEAALTGRISIFVGQSGVGKS 219 (347)
T ss_pred HHHHHHHHhcCCCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcCHHHHHHHHhhCCEEEECCCCCCHH
Confidence 99999999999999999999993 11 2221 24679999998875 22 246889999999999999
Q ss_pred HHHhhhhhccCCcccceee-------ecCCCccccccCCeeEEecChH-----HH--HHHHhhhhhHHHHHHhccc----
Q 015825 148 TLISMLMKEFPSMFGFSVS-------HTTRAPRAMEKDGVHYHFTERS-----VM--EKAIKDGKFLEFASVHGNL---- 209 (399)
Q Consensus 148 Tl~~~L~~~~~~~~g~~i~-------~ttr~~~~~~~~~i~yvfq~~~-----lf--~~~~~~~~~~E~~~~~~~~---- 209 (399)
||+|.|.+.....+| .++ |||+..+.....+.+++..+|. ++ ........|.|+..+...|
T Consensus 220 TLiN~Ll~~~~~~t~-~is~~~~rGrHTT~~~~l~~l~~~~~liDTPGir~~~l~~~~~~~l~~~F~ei~~~~~~CrF~d 298 (347)
T PRK12288 220 SLINALLPEAEILVG-DVSDNSGLGQHTTTAARLYHFPHGGDLIDSPGVREFGLWHLEPEQVTQGFVEFRDYLGTCKFRD 298 (347)
T ss_pred HHHHHhccccceeec-cccCcCCCCcCceeeEEEEEecCCCEEEECCCCCcccCCCCCHHHHHHhhHHHHHHhcCCCCCC
Confidence 999999998777777 554 7888877666554456644432 22 1112234788887777665
Q ss_pred ---cCCcHHHHHHHHHcCC
Q 015825 210 ---YGTSVEAVEAVADAGK 225 (399)
Q Consensus 210 ---~g~~~~~i~~~~~~g~ 225 (399)
...|.|.+.+++++|.
T Consensus 299 C~H~~EpgCaV~~Av~~g~ 317 (347)
T PRK12288 299 CKHDDDPGCALREAVEEGK 317 (347)
T ss_pred CccCCCCCChHHHHHHcCC
Confidence 4577899999888876
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-25 Score=212.96 Aligned_cols=205 Identities=15% Similarity=0.092 Sum_probs=165.7
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeec------CCCccccccCCeeEEecChHHHHHHHhhhhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHT------TRAPRAMEKDGVHYHFTERSVMEKAIKDGKF 199 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~t------tr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~ 199 (399)
.+....+|++++++|.||||||||++++.++..|..|...... +....+..++.+|++||++.++..+ ++
T Consensus 25 vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~R~~IGMIFQhFnLLssr----TV 100 (339)
T COG1135 25 VSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSR----TV 100 (339)
T ss_pred ceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHHHhhccEEeccccccccc----hH
Confidence 4456679999999999999999999999999999999433321 1112223345699999999887655 99
Q ss_pred HHHHHHhccccCCcHHHHHHHHHcCCceE-----EecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHH
Q 015825 200 LEFASVHGNLYGTSVEAVEAVADAGKRCI-----LDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQI 274 (399)
Q Consensus 200 ~E~~~~~~~~~g~~~~~i~~~~~~g~~~v-----ldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i 274 (399)
.+|+.|...+.+.++.++++++.+.+..+ .+-.|..+...++|++..+.+++++|++++.||+++++||.+.+.+
T Consensus 101 ~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sI 180 (339)
T COG1135 101 FENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETTQSI 180 (339)
T ss_pred HhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHHHHHhcCCCEEEecCccccCChHHHHHH
Confidence 99999999999999998888776533221 1122333333467777888899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhc
Q 015825 275 LKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSK 341 (399)
Q Consensus 275 ~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~ 341 (399)
.+.|+.+.++++. |+|++||.++-+...|+++.++..|.++..++..+++..|......+
T Consensus 181 L~LL~~In~~lgl-------TIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~Pk~~~t~~ 240 (339)
T COG1135 181 LELLKDINRELGL-------TIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANPKHAITQE 240 (339)
T ss_pred HHHHHHHHHHcCC-------EEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCcchHHHHH
Confidence 9999999988744 99999999999999999999999999999999999999996554333
|
|
| >cd01854 YjeQ_engC YjeQ/EngC | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.7e-24 Score=208.14 Aligned_cols=191 Identities=25% Similarity=0.241 Sum_probs=144.9
Q ss_pred CCceeccEEEEEe-cCCeeEEEEeeeCCCceEEccc--------ccCCC------CCCCCCCCccCccccchhhhhccCC
Q 015825 31 TTTVIGDKTYVIA-GSDESIGVKIYDRSTGNWLIPA--------VRGIE------PRPCKGHSAVLLNEDRILVIKKGSS 95 (399)
Q Consensus 31 ~~~~vGD~v~~~~-~~~~~~i~~i~~r~~~~l~rp~--------~an~~------~~~~p~~~~~~l~~dr~L~~~~~~~ 95 (399)
..|+|||||.++. ++++|+|++|+|| +|.|+||+ ++|+| ++.+|.+++..+ ||+|+.++..+
T Consensus 33 ~~~~vGD~V~~~~~~~~~~~i~~i~~R-~~~l~R~~~~~~~~~i~anvD~vllV~d~~~p~~s~~~l--dr~L~~~~~~~ 109 (287)
T cd01854 33 IKPVVGDWVEVEPDDDGEGVIVRVLPR-KNLLSRPAAGGREQVIAANVDQLVIVVSLNEPFFNPRLL--DRYLVAAEAAG 109 (287)
T ss_pred CCccCCCEEEEEecCCCcEEEEEEECC-CceEEccCCCCcceeEEEeCCEEEEEEEcCCCCCCHHHH--HHHHHHHHHcC
Confidence 4699999999986 4457999999999 99999999 99999 566677888999 99999999999
Q ss_pred CceEEEEeCCCh--H-HH---HHHHHHhCCeEEEeccC-cc-------CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcc
Q 015825 96 SDDCLWFLEVDT--P-YV---REQKKVVGAEVVAWSKG-VI-------GNVEKPVVITGPSGVGKGTLISMLMKEFPSMF 161 (399)
Q Consensus 96 ~~~~i~~~k~D~--~-~~---~~l~~~~g~~v~~~s~~-~~-------~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~ 161 (399)
++++|++||+|. + .. .......||+++.+|+. .. .+.+++++|+|+||+|||||+|.|.+...+..
T Consensus 110 ip~iIVlNK~DL~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~~L~~k~~~~~G~sg~GKSTlin~l~~~~~~~~ 189 (287)
T cd01854 110 IEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGLDELREYLKGKTSVLVGQSGVGKSTLINALLPDLDLAT 189 (287)
T ss_pred CCEEEEEEHHHCCChHHHHHHHHHHHhCCCeEEEEECCCCccHHHHHhhhccceEEEECCCCCCHHHHHHHHhchhhccc
Confidence 999999999993 2 11 11235679999998876 22 35789999999999999999999999988777
Q ss_pred cceee-------ecCCCccccccCCeeEEecChHH---H-HH---HHhhhhhHHHHHHhccc-------cCCcHHHHHHH
Q 015825 162 GFSVS-------HTTRAPRAMEKDGVHYHFTERSV---M-EK---AIKDGKFLEFASVHGNL-------YGTSVEAVEAV 220 (399)
Q Consensus 162 g~~i~-------~ttr~~~~~~~~~i~yvfq~~~l---f-~~---~~~~~~~~E~~~~~~~~-------~g~~~~~i~~~ 220 (399)
| .++ |||+........+.+++..++.+ . .. ......|.++..+...| ...|.|.++++
T Consensus 190 g-~v~~~~~~g~~tT~~~~~~~~~~~~~liDtPG~~~~~~~~~~~~~~~~~f~~~~~~~~~C~F~~C~H~~Ep~Cav~~a 268 (287)
T cd01854 190 G-EISEKLGRGRHTTTHRELFPLPGGGLLIDTPGFREFGLLHIDPEELAHYFPEFRELAGQCKFRDCTHTNEPGCAVKAA 268 (287)
T ss_pred c-ceeccCCCCCcccceEEEEEcCCCCEEEECCCCCccCCccCCHHHHHHHhHHHHHHhCCCCCCCCcCCCCCCCHHHHH
Confidence 7 443 57776655555545678776654 1 11 11222455555555544 44778999999
Q ss_pred HHcCC
Q 015825 221 ADAGK 225 (399)
Q Consensus 221 ~~~g~ 225 (399)
+++|.
T Consensus 269 v~~g~ 273 (287)
T cd01854 269 VEAGE 273 (287)
T ss_pred HHcCC
Confidence 88876
|
YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation. |
| >PRK00098 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.2e-24 Score=206.71 Aligned_cols=201 Identities=24% Similarity=0.317 Sum_probs=151.5
Q ss_pred cceecccCC----CCCceeccEEEEEe-cCCeeEEEEeeeCCCceEEcccc-------cCCC------CCCCCCCCccCc
Q 015825 21 GFSLKSRDC----ETTTVIGDKTYVIA-GSDESIGVKIYDRSTGNWLIPAV-------RGIE------PRPCKGHSAVLL 82 (399)
Q Consensus 21 ~~~~k~~~~----~~~~~vGD~v~~~~-~~~~~~i~~i~~r~~~~l~rp~~-------an~~------~~~~p~~~~~~l 82 (399)
.+..+.+++ +..|+|||||.+.. .++.|+|++|+|| +|.++||.+ +|+| ++.+|.++..++
T Consensus 22 ~~~~~~~g~~~~~~~~~~vGD~V~~~~~~~~~g~i~~i~~R-~~~l~R~~~~~~q~iaaniD~vllV~d~~~p~~~~~~i 100 (298)
T PRK00098 22 VYQCRARGKFRKKTNTPAVGDRVEFSAENNDEGVILEIHER-KNLLVRPPIFKSKLIAANVDQAVLVFAAKEPDFSTDLL 100 (298)
T ss_pred EEEEEeccccccCCCCcCCCCEEEEEECCCCcEEEEEEeCC-CceEECCCCccccceeecCCEEEEEEECCCCCCCHHHH
Confidence 355554443 34599999999986 4457999999999 899999998 9999 566788888889
Q ss_pred cccchhhhhccCCCceEEEEeCCCh----HHHH---HHHHHhCCeEEEeccC-cc-------CCCCcEEEEEcCCCCCHH
Q 015825 83 NEDRILVIKKGSSSDDCLWFLEVDT----PYVR---EQKKVVGAEVVAWSKG-VI-------GNVEKPVVITGPSGVGKG 147 (399)
Q Consensus 83 ~~dr~L~~~~~~~~~~~i~~~k~D~----~~~~---~l~~~~g~~v~~~s~~-~~-------~~~g~~~~l~GpsG~GKS 147 (399)
+|+|+.++..+++++|++||+|. +... ...+.+|++++.+|+. .. .+.|++++|+|+||+|||
T Consensus 101 --dr~L~~~~~~~ip~iIVlNK~DL~~~~~~~~~~~~~~~~~g~~v~~vSA~~g~gi~~L~~~l~gk~~~~~G~sgvGKS 178 (298)
T PRK00098 101 --DRFLVLAEANGIKPIIVLNKIDLLDDLEEARELLALYRAIGYDVLELSAKEGEGLDELKPLLAGKVTVLAGQSGVGKS 178 (298)
T ss_pred --HHHHHHHHHCCCCEEEEEEhHHcCCCHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHhhccCceEEEECCCCCCHH
Confidence 99999999999999999999993 1121 2235679999998866 22 358999999999999999
Q ss_pred HHHhhhhhccCCcccceee-------ecCCCccccccCCeeEEecChHHH-------HHHHhhhhhHHHHHHhcc-----
Q 015825 148 TLISMLMKEFPSMFGFSVS-------HTTRAPRAMEKDGVHYHFTERSVM-------EKAIKDGKFLEFASVHGN----- 208 (399)
Q Consensus 148 Tl~~~L~~~~~~~~g~~i~-------~ttr~~~~~~~~~i~yvfq~~~lf-------~~~~~~~~~~E~~~~~~~----- 208 (399)
||+|+|.+.....+| .++ |||+..+.....+.+|+..++.+. ........|.++..+.+.
T Consensus 179 tlin~l~~~~~~~~g-~v~~~~~~G~htT~~~~~~~~~~~~~~~DtpG~~~~~~~~~~~~~~~~~f~~~~~~~~~c~f~~ 257 (298)
T PRK00098 179 TLLNALAPDLELKTG-EISEALGRGKHTTTHVELYDLPGGGLLIDTPGFSSFGLHDLEAEELEHYFPEFRPLSGDCKFRN 257 (298)
T ss_pred HHHHHHhCCcCCCCc-ceeccCCCCCcccccEEEEEcCCCcEEEECCCcCccCCCCCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 999999999888777 554 688877776665556775554332 111112245565555553
Q ss_pred --ccCCcHHHHHHHHHcCC
Q 015825 209 --LYGTSVEAVEAVADAGK 225 (399)
Q Consensus 209 --~~g~~~~~i~~~~~~g~ 225 (399)
+++++.|.++++++.|.
T Consensus 258 c~h~~ep~c~v~~a~~~g~ 276 (298)
T PRK00098 258 CTHLHEPGCAVKAAVEEGE 276 (298)
T ss_pred CcCCCCCCChHHHHHHcCC
Confidence 47889999999998876
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-25 Score=222.04 Aligned_cols=208 Identities=12% Similarity=0.133 Sum_probs=160.3
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
.+....+|++++|+||||||||||+++|+|+.++..| .+....+.. .....++++|+||++.+|+++ ++.+++
T Consensus 25 isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G-~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~~----tv~eNi 99 (351)
T PRK11432 25 LNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEG-QIFIDGEDVTHRSIQQRDICMVFQSYALFPHM----SLGENV 99 (351)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCce-EEEECCEECCCCCHHHCCEEEEeCCcccCCCC----CHHHHH
Confidence 4445568999999999999999999999999999999 555432211 112235699999999999988 899999
Q ss_pred HHhccccCCcHHHHHHHHHc-----CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-----GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRL 278 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-----g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L 278 (399)
.|....++.+.....+.+.+ +..-+.+-.+..+...++|+...+.+++.+|++++||||++++|+.+++++++.|
T Consensus 100 ~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l 179 (351)
T PRK11432 100 GYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKI 179 (351)
T ss_pred HHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 88755555544433332222 2222222233333344566777778999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccCe
Q 015825 279 RNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVANK 345 (399)
Q Consensus 279 ~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~~ 345 (399)
+++.++. ..++++++||++++...+++++.+.+|++++.+++.+++..|.+..++.+.+.
T Consensus 180 ~~l~~~~-------g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~~~~~a~~~g~ 239 (351)
T PRK11432 180 RELQQQF-------NITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRFMASFMGD 239 (351)
T ss_pred HHHHHhc-------CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCchHHHHhcCC
Confidence 9876543 23899999999999999999999999999999999999999998888887664
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.9e-25 Score=221.96 Aligned_cols=207 Identities=14% Similarity=0.129 Sum_probs=159.4
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
.+....+|++++|+||||||||||+++|+|+.++..| .+....+.. .....++++|+||++.+|+++ ++.+|+
T Consensus 23 vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G-~I~i~g~~~~~~~~~~r~ig~v~Q~~~lfp~~----tv~eNi 97 (353)
T TIGR03265 23 ISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAG-TIYQGGRDITRLPPQKRDYGIVFQSYALFPNL----TVADNI 97 (353)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCce-EEEECCEECCCCCHHHCCEEEEeCCcccCCCC----cHHHHH
Confidence 4445568999999999999999999999999999988 554322111 111245699999999999988 899999
Q ss_pred HHhccccCCcHHHHHH----HHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHH
Q 015825 204 SVHGNLYGTSVEAVEA----VADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRL 278 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~----~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L 278 (399)
.|....++.+.....+ .++. ++.-+++-.+..+...++|++..+.+++.+|++++||||++++|..+++.+++.|
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~~l~~l~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L 177 (353)
T TIGR03265 98 AYGLKNRGMGRAEVAERVAELLDLVGLPGSERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEI 177 (353)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 8865544444433332 2222 2222333334444445677777888999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccC
Q 015825 279 RNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVAN 344 (399)
Q Consensus 279 ~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~ 344 (399)
+++.++. ..++|+++||++++...+++++.+.+|++++.+++.+++..|....++.+.+
T Consensus 178 ~~l~~~~-------~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g 236 (353)
T TIGR03265 178 RQLQRRL-------GVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPFVADFVG 236 (353)
T ss_pred HHHHHhc-------CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHHHHhcC
Confidence 9876543 2389999999999999999999999999999999999999998888776654
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-25 Score=205.81 Aligned_cols=218 Identities=12% Similarity=0.068 Sum_probs=166.4
Q ss_pred HHHHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC-c------cccccCCeeEEe
Q 015825 112 EQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA-P------RAMEKDGVHYHF 184 (399)
Q Consensus 112 ~l~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~-~------~~~~~~~i~yvf 184 (399)
.+.+.+|..++..+.+....+|++++++||||+|||||++.|.|+++|..| .+...... . ....+++.|++|
T Consensus 13 ~v~~~fG~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~G-eI~i~G~~i~~ls~~~~~~ir~r~GvlF 91 (263)
T COG1127 13 GVTKSFGDRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKG-EILIDGEDIPQLSEEELYEIRKRMGVLF 91 (263)
T ss_pred eeeeecCCEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCC-eEEEcCcchhccCHHHHHHHHhheeEEe
Confidence 455778989988888888889999999999999999999999999999999 55432211 1 112234689999
Q ss_pred cChHHHHHHHhhhhhHHHHHHhccc-cCCcHHHHHHHHHcCCce-----E-EecchhhHHHHHcCCcceeEEEEcCCChH
Q 015825 185 TERSVMEKAIKDGKFLEFASVHGNL-YGTSVEAVEAVADAGKRC-----I-LDIDVQGARSVRASPLDAIFIFICPPSME 257 (399)
Q Consensus 185 q~~~lf~~~~~~~~~~E~~~~~~~~-~g~~~~~i~~~~~~g~~~-----v-ldld~~g~~~l~~~~~~~~~ili~~P~ll 257 (399)
|+..+|..+ ++.||+.|.-+- ...++..+++.+...+.. . .++-|..+....+.+...+.+++.+|+++
T Consensus 92 Q~gALFssl----tV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdPell 167 (263)
T COG1127 92 QQGALFSSL----TVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELL 167 (263)
T ss_pred ecccccccc----chhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCCCEE
Confidence 999999988 999999886433 345666666544321111 1 22222222222334455566999999999
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcch
Q 015825 258 ELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADH 337 (399)
Q Consensus 258 lLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~ 337 (399)
++|||++++||.+...+.+.++++++.+.. |.++||||+++++..+|+++.+.+++++..|+++++...+ +.
T Consensus 168 ~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~-------T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~sd-~P 239 (263)
T COG1127 168 FLDEPTSGLDPISAGVIDELIRELNDALGL-------TVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASD-DP 239 (263)
T ss_pred EecCCCCCCCcchHHHHHHHHHHHHHhhCC-------EEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhCC-CH
Confidence 999999999999999999999999887644 8999999999999999999999999999999999888653 44
Q ss_pred hhhcc
Q 015825 338 SVSKV 342 (399)
Q Consensus 338 ~v~~~ 342 (399)
.+.++
T Consensus 240 ~v~qf 244 (263)
T COG1127 240 WVRQF 244 (263)
T ss_pred HHHHH
Confidence 55554
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-25 Score=199.81 Aligned_cols=201 Identities=13% Similarity=0.107 Sum_probs=150.8
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccc----eeeecCCCc------cccccCCeeEEecChHHHHHHHhhh
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGF----SVSHTTRAP------RAMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~----~i~~ttr~~------~~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
....++++++|+|||||||||++++|........+. .+....... ....++.+|++||.+.-|+ +
T Consensus 28 l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~~lRr~vGMVFQkPnPFp-~---- 102 (253)
T COG1117 28 LDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFP-M---- 102 (253)
T ss_pred eeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHHHHHHHheeeccCCCCCC-c----
Confidence 345689999999999999999999999886653321 332211111 1112345899999999998 4
Q ss_pred hhHHHHHHhccccCCcHHHHHHHHHcCC--ceE-------EecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCC
Q 015825 198 KFLEFASVHGNLYGTSVEAVEAVADAGK--RCI-------LDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGT 268 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~~~~~i~~~~~~g~--~~v-------ldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~ 268 (399)
+..||+.|..++.|...+...++++..+ ..+ ++-...++...++|++..+.+++..|++++||||++++||
T Consensus 103 SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQQRLcIARalAv~PeVlLmDEPtSALDP 182 (253)
T COG1117 103 SIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDP 182 (253)
T ss_pred hHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHHHHHHHHHHHhcCCcEEEecCcccccCc
Confidence 7899999998888876544444433211 001 1111122333456777788899999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcc
Q 015825 269 ETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKV 342 (399)
Q Consensus 269 ~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~ 342 (399)
.+...+.+.+.+++++ +|+|||||++.+|....|+..-+..|.++..+...+++..|..+..+++
T Consensus 183 IsT~kIEeLi~eLk~~---------yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~P~~~~TedY 247 (253)
T COG1117 183 ISTLKIEELITELKKK---------YTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTNPKHKRTEDY 247 (253)
T ss_pred hhHHHHHHHHHHHHhc---------cEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcCccHHHHHHH
Confidence 9999999999987743 4999999999999999999999999999999999999999987776553
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.7e-25 Score=221.28 Aligned_cols=208 Identities=13% Similarity=0.119 Sum_probs=159.1
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
.+....+|++++|+||||||||||+++|+|+.++..| .+....+.. .....++++|+||++.+|+++ ++.+|+
T Consensus 33 vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G-~I~~~g~~i~~~~~~~r~ig~vfQ~~~lfp~l----tv~eNi 107 (375)
T PRK09452 33 LDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSG-RIMLDGQDITHVPAENRHVNTVFQSYALFPHM----TVFENV 107 (375)
T ss_pred eEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEEECCEECCCCCHHHCCEEEEecCcccCCCC----CHHHHH
Confidence 3445568999999999999999999999999999888 554432211 111235699999999999988 899999
Q ss_pred HHhccccCCcHHHHHH----HHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHH
Q 015825 204 SVHGNLYGTSVEAVEA----VADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRL 278 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~----~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L 278 (399)
.|....++.+.....+ .++. ++.-+++-.+..+....+|++..+.+++.+|++++||||++++|...++.+++.|
T Consensus 108 ~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L 187 (375)
T PRK09452 108 AFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLRKQMQNEL 187 (375)
T ss_pred HHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHH
Confidence 8865444444433322 2222 2222223233333334566777778999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccCe
Q 015825 279 RNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVANK 345 (399)
Q Consensus 279 ~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~~ 345 (399)
+++.++. ..++|++|||++++...+++++.+.+|++.+.+++.+++..|.+.+++++.+.
T Consensus 188 ~~l~~~~-------g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~~~~~a~~~g~ 247 (375)
T PRK09452 188 KALQRKL-------GITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLFVARFIGE 247 (375)
T ss_pred HHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHHHHHhcCc
Confidence 9877643 23899999999999999999999999999999999999999988888876653
|
|
| >TIGR00157 ribosome small subunit-dependent GTPase A | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-23 Score=197.83 Aligned_cols=188 Identities=22% Similarity=0.244 Sum_probs=146.0
Q ss_pred ceeccEEEEEec-CCeeEEEEeeeCCCceEEcccccCCC------CCCCCCCCccCccccchhhhhccCCCceEEEEeCC
Q 015825 33 TVIGDKTYVIAG-SDESIGVKIYDRSTGNWLIPAVRGIE------PRPCKGHSAVLLNEDRILVIKKGSSSDDCLWFLEV 105 (399)
Q Consensus 33 ~~vGD~v~~~~~-~~~~~i~~i~~r~~~~l~rp~~an~~------~~~~p~~~~~~l~~dr~L~~~~~~~~~~~i~~~k~ 105 (399)
|+|||||.++.. +++|+|++|+|| +|.|.||.++|+| ++.+|.+++..+ +|+|+.++..+++++|++||+
T Consensus 1 ~~vGD~V~~~~~~~~~~~i~~i~eR-~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l--~r~l~~~~~~~i~~vIV~NK~ 77 (245)
T TIGR00157 1 LVVGDRVVWEPGNVVKVYGGAIAER-KNELTRPIVANIDQIVIVSSAVLPELSLNQL--DRFLVVAEAQNIEPIIVLNKI 77 (245)
T ss_pred CCCCcEEEEEecCCCceEEEEEecc-cceEECcccccCCEEEEEEECCCCCCCHHHH--HHHHHHHHHCCCCEEEEEECc
Confidence 689999999874 457999999999 8999999999999 677799999999 999999998999999999999
Q ss_pred Ch---HHHH----HHHHHhCCeEEEeccC-cc-------CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceee----
Q 015825 106 DT---PYVR----EQKKVVGAEVVAWSKG-VI-------GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS---- 166 (399)
Q Consensus 106 D~---~~~~----~l~~~~g~~v~~~s~~-~~-------~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~---- 166 (399)
|. .... ...+..||+++.+|+. .. .+.+++++|+|+||+|||||+|.|.+.....+| .++
T Consensus 78 DL~~~~~~~~~~~~~~~~~g~~v~~~SAktg~gi~eLf~~l~~~~~~~~G~sgvGKStLiN~L~~~~~~~t~-~i~~~~~ 156 (245)
T TIGR00157 78 DLLDDEDMEKEQLDIYRNIGYQVLMTSSKNQDGLKELIEALQNRISVFAGQSGVGKSSLINALDPSVKQQVN-DISSKLG 156 (245)
T ss_pred ccCCCHHHHHHHHHHHHHCCCeEEEEecCCchhHHHHHhhhcCCEEEEECCCCCCHHHHHHHHhhhhhcccc-ceeccCC
Confidence 93 1111 1224689999998865 22 257899999999999999999999998777666 443
Q ss_pred ---ecCCCccccccCCeeEEecChHHH-------HHHHhhhhhHHHHHHhccc-------cCCcHHHHHHHHHcCC
Q 015825 167 ---HTTRAPRAMEKDGVHYHFTERSVM-------EKAIKDGKFLEFASVHGNL-------YGTSVEAVEAVADAGK 225 (399)
Q Consensus 167 ---~ttr~~~~~~~~~i~yvfq~~~lf-------~~~~~~~~~~E~~~~~~~~-------~g~~~~~i~~~~~~g~ 225 (399)
|||+........ .+|+..+|.+. ........|.|+..+...| ...|.|.+++++++|.
T Consensus 157 ~G~hTT~~~~l~~l~-~~~liDtPG~~~~~l~~~~~~~~~~~f~e~~~~~~~C~f~~C~H~~ep~C~v~~a~~~g~ 231 (245)
T TIGR00157 157 LGKHTTTHVELFHFH-GGLIADTPGFNEFGLWHLEPEQLTQGFVEFRDYLGECKFRDCLHQSEPGCAVRQAVEQGE 231 (245)
T ss_pred CCCCcCCceEEEEcC-CcEEEeCCCccccCCCCCCHHHHHHhCHHHHHHhCCCCCCCCccCCCCCChHHHHHHcCC
Confidence 688887766553 46776554331 1112234677877776655 4577899999988876
|
The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option). |
| >PRK12289 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.2e-23 Score=207.98 Aligned_cols=156 Identities=22% Similarity=0.219 Sum_probs=125.2
Q ss_pred CCCceeccEEEEEec---CCeeEEEEeeeCCCceEEcccccCCC------CCCCCCCCccCccccchhhhhccCCCceEE
Q 015825 30 ETTTVIGDKTYVIAG---SDESIGVKIYDRSTGNWLIPAVRGIE------PRPCKGHSAVLLNEDRILVIKKGSSSDDCL 100 (399)
Q Consensus 30 ~~~~~vGD~v~~~~~---~~~~~i~~i~~r~~~~l~rp~~an~~------~~~~p~~~~~~l~~dr~L~~~~~~~~~~~i 100 (399)
+..|+|||||.++.. ++.|+|++|+|| +|.|.||.+||+| +..+|.+++..| ||||+.++..+++++|
T Consensus 49 ~~~~~vGD~V~~~~~~~~~~~~~I~~vlpR-~~~L~R~~~aNvD~vLlV~d~~~p~~~~~~L--dR~L~~a~~~~ip~IL 125 (352)
T PRK12289 49 GQQVMVGDRVIVEEPDWQGQRGAIAEVLPR-KTELDRPPVANADQILLVFALAEPPLDPWQL--SRFLVKAESTGLEIVL 125 (352)
T ss_pred CCCcccCCEEEEeecCCCCCceEEEEEecc-ccceechhhhcCCEEEEEEECCCCCCCHHHH--HHHHHHHHHCCCCEEE
Confidence 345999999999852 246999999999 9999999999999 556788999999 9999999999999999
Q ss_pred EEeCCCh---HHHHHH---HHHhCCeEEEeccC-cc-------CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceee
Q 015825 101 WFLEVDT---PYVREQ---KKVVGAEVVAWSKG-VI-------GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS 166 (399)
Q Consensus 101 ~~~k~D~---~~~~~l---~~~~g~~v~~~s~~-~~-------~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~ 166 (399)
++||+|. +..+.+ .+.+||+++.+|+. .. .+.+++++|+|+||+|||||+|.|.+......| .++
T Consensus 126 VlNK~DLv~~~~~~~~~~~~~~~g~~v~~iSA~tg~GI~eL~~~L~~ki~v~iG~SgVGKSSLIN~L~~~~~~~t~-~vs 204 (352)
T PRK12289 126 CLNKADLVSPTEQQQWQDRLQQWGYQPLFISVETGIGLEALLEQLRNKITVVAGPSGVGKSSLINRLIPDVELRVG-KVS 204 (352)
T ss_pred EEEchhcCChHHHHHHHHHHHhcCCeEEEEEcCCCCCHHHHhhhhccceEEEEeCCCCCHHHHHHHHcCccccccc-ccc
Confidence 9999993 222222 25789999998876 22 247889999999999999999999988776666 454
Q ss_pred -------ecCCCccccccCCeeEEecChHH
Q 015825 167 -------HTTRAPRAMEKDGVHYHFTERSV 189 (399)
Q Consensus 167 -------~ttr~~~~~~~~~i~yvfq~~~l 189 (399)
|||+........+.+++..+|.+
T Consensus 205 ~~~~rGrHTT~~~~l~~l~~g~~liDTPG~ 234 (352)
T PRK12289 205 GKLGRGRHTTRHVELFELPNGGLLADTPGF 234 (352)
T ss_pred CCCCCCCCcCceeEEEECCCCcEEEeCCCc
Confidence 69998877766544577655543
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.1e-25 Score=219.19 Aligned_cols=208 Identities=14% Similarity=0.126 Sum_probs=157.7
Q ss_pred ccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--cccccCCeeEEecChHHHHHHHhhhhhHHH
Q 015825 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (399)
Q Consensus 125 s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~ 202 (399)
+.++...+|++++|+||||||||||+++|+|+.++..| .+....... .....++++|+||++.+|+++ ++.++
T Consensus 22 ~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G-~I~~~g~~i~~~~~~~r~ig~v~Q~~~lfp~~----tv~eN 96 (356)
T PRK11650 22 GIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSG-EIWIGGRVVNELEPADRDIAMVFQNYALYPHM----SVREN 96 (356)
T ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCce-EEEECCEECCCCCHHHCCEEEEeCCccccCCC----CHHHH
Confidence 34445568999999999999999999999999999989 555422211 111235699999999999887 89999
Q ss_pred HHHhccccCCcHHHHHH----HHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHH
Q 015825 203 ASVHGNLYGTSVEAVEA----VADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (399)
Q Consensus 203 ~~~~~~~~g~~~~~i~~----~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~ 277 (399)
+.|....++.+.....+ .++. +...+.+-.+..+...++|++..+.+++.+|++++||||++++|+.+++.+++.
T Consensus 97 i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~llLLDEP~s~LD~~~r~~l~~~ 176 (356)
T PRK11650 97 MAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLDAKLRVQMRLE 176 (356)
T ss_pred HHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 98875544444433322 2222 222222222333333456777778899999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccC
Q 015825 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVAN 344 (399)
Q Consensus 278 L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~ 344 (399)
++++.++. ..++|+++||++++...+++++.+.+|++++.+++.+++..|....++.+.+
T Consensus 177 l~~l~~~~-------g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~~~~~~~~g 236 (356)
T PRK11650 177 IQRLHRRL-------KTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPASTFVASFIG 236 (356)
T ss_pred HHHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCccHHHHHHcC
Confidence 99876543 2389999999999999999999999999999999999999998777776544
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=99.90 E-value=7.3e-25 Score=218.33 Aligned_cols=212 Identities=13% Similarity=0.081 Sum_probs=159.2
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcc--cceeeecCCCc--cccccCCeeEEecChHHHHHHHhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMF--GFSVSHTTRAP--RAMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~--g~~i~~ttr~~--~~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
+..+.+....+|++++|+||||||||||+++|+|+.++.. | .+....... .....+.++|+||++.+|+++
T Consensus 20 ~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G-~i~~~g~~~~~~~~~~r~ig~vfQ~~~l~p~~---- 94 (362)
T TIGR03258 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTG-RIAIADRDLTHAPPHKRGLALLFQNYALFPHL---- 94 (362)
T ss_pred EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCE-EEEECCEECCCCCHHHCCEEEEECCcccCCCC----
Confidence 3333444556899999999999999999999999999988 8 554322111 111235699999999999888
Q ss_pred hhHHHHHHhccccCCcHHHHHHH----HHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 198 KFLEFASVHGNLYGTSVEAVEAV----ADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~~~~~i~~~----~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
++.+++.|....++.+.....+. ++. ++..+.+-.+..+...++|++..+.+++.+|++++||||++++|+..++
T Consensus 95 tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~~~~LSgGq~QRvaLARAL~~~P~llLLDEP~s~LD~~~r~ 174 (362)
T TIGR03258 95 KVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRA 174 (362)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHH
Confidence 89999988755555554433332 222 2222222233333344567777788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccC
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVAN 344 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~ 344 (399)
++++.|+++.++. +..+++++|||++++...+++++.+.+|++++.+++.+++..|.+..++.+.+
T Consensus 175 ~l~~~l~~l~~~~------~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g 240 (362)
T TIGR03258 175 NMREEIAALHEEL------PELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPADGFAAEFLG 240 (362)
T ss_pred HHHHHHHHHHHhC------CCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcCcHHHHHhhC
Confidence 9999999876542 12389999999999999999999999999999999999999998777665544
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.5e-25 Score=219.79 Aligned_cols=208 Identities=10% Similarity=0.036 Sum_probs=158.2
Q ss_pred ccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--cccccCCeeEEecChHHHHHHHhhhhhHHH
Q 015825 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (399)
Q Consensus 125 s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~ 202 (399)
+.+....+|++++|+||||||||||+++|+|+.++..| .+....... .....++++|+||++.+|+++ ++.||
T Consensus 37 ~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G-~I~i~g~~i~~~~~~~r~ig~vfQ~~~lfp~l----tv~eN 111 (377)
T PRK11607 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAG-QIMLDGVDLSHVPPYQRPINMMFQSYALFPHM----TVEQN 111 (377)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEEECCEECCCCCHHHCCEEEEeCCCccCCCC----CHHHH
Confidence 34455568999999999999999999999999999888 554322111 112345699999999999988 89999
Q ss_pred HHHhccccCCcHHHHHHHH----Hc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHH
Q 015825 203 ASVHGNLYGTSVEAVEAVA----DA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (399)
Q Consensus 203 ~~~~~~~~g~~~~~i~~~~----~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~ 277 (399)
+.|.....+.+.....+.+ +. ++.-+.+-.+..+...++|++..+.+++.+|++++||||++++|...++.+++.
T Consensus 112 i~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~ 191 (377)
T PRK11607 112 IAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLE 191 (377)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHH
Confidence 9886544444444333322 21 222222333334444456777778899999999999999999999999999998
Q ss_pred HHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccC
Q 015825 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVAN 344 (399)
Q Consensus 278 L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~ 344 (399)
+.++.++. ..++|+++||++++...+++++.+.+|++++.+++.+++..|...+++.+.+
T Consensus 192 l~~l~~~~-------g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g 251 (377)
T PRK11607 192 VVDILERV-------GVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSAEFIG 251 (377)
T ss_pred HHHHHHhc-------CCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCccHHHHHhcC
Confidence 88876543 2489999999999999999999999999999999999999998877776554
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-25 Score=219.38 Aligned_cols=214 Identities=14% Similarity=0.120 Sum_probs=159.2
Q ss_pred CCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc---c-----cccCCeeEEecChHH
Q 015825 118 GAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR---A-----MEKDGVHYHFTERSV 189 (399)
Q Consensus 118 g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~---~-----~~~~~i~yvfq~~~l 189 (399)
|......+.++...+|++++|+||||||||||+++|+|+++|..| .+........ . ..+++++|+||++.+
T Consensus 4 ~~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G-~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l 82 (363)
T TIGR01186 4 GGKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAG-QIFIDGENIMKQSPVELREVRRKKIGMVFQQFAL 82 (363)
T ss_pred CCceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCce-EEEECCEECCcCCHHHHHHHHhCcEEEEECCCcC
Confidence 434444444556679999999999999999999999999999999 5543222111 0 114579999999998
Q ss_pred HHHHHhhhhhHHHHHHhccccCCcHHHHHHHHHc-----CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHH
Q 015825 190 MEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADA-----GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (399)
Q Consensus 190 f~~~~~~~~~~E~~~~~~~~~g~~~~~i~~~~~~-----g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~ 264 (399)
|+++ ++.+|+.+....++.......+.+.+ ++....+-.+..+...++|++..+.+++.+|++++||||++
T Consensus 83 ~~~~----TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~s 158 (363)
T TIGR01186 83 FPHM----TILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFS 158 (363)
T ss_pred CCCC----CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 8887 88899887665555554433322222 11111122222233345667777789999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhccc
Q 015825 265 ARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVA 343 (399)
Q Consensus 265 ~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~ 343 (399)
++|+.+++.+++.+.+++++. ..|+|+++||++++...+++++.+.+|.+++.+++++++..|.+..+..+.
T Consensus 159 aLD~~~r~~l~~~l~~l~~~~-------~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~~~~~ 230 (363)
T TIGR01186 159 ALDPLIRDSMQDELKKLQATL-------QKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYVEEFI 230 (363)
T ss_pred cCCHHHHHHHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHHHHHh
Confidence 999999999999999876543 238999999999999999999999999999999999998888877766553
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.9e-25 Score=201.49 Aligned_cols=205 Identities=17% Similarity=0.124 Sum_probs=169.2
Q ss_pred HHHHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHH
Q 015825 112 EQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVME 191 (399)
Q Consensus 112 ~l~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~ 191 (399)
++.+.+|......+.++...+|++++|+|||||||||++++|++++++..| .|.+...+......+.+||+|....+|+
T Consensus 7 ~vtK~Fg~k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G-~I~~~g~~~~~~~~~rIGyLPEERGLy~ 85 (300)
T COG4152 7 GVTKSFGDKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEG-EITWNGGPLSQEIKNRIGYLPEERGLYP 85 (300)
T ss_pred cchhccCceeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCc-eEEEcCcchhhhhhhhcccChhhhccCc
Confidence 455778877766666677889999999999999999999999999999999 7777666665555667999999999999
Q ss_pred HHHhhhhhHHHHHHhccccCCcHHHHHHHHHcCCceEEecc------hhhHHHHHcCCcceeEEEEcCCChHHHHHHHHh
Q 015825 192 KAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDID------VQGARSVRASPLDAIFIFICPPSMEELEERLRA 265 (399)
Q Consensus 192 ~~~~~~~~~E~~~~~~~~~g~~~~~i~~~~~~g~~~vldld------~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~ 265 (399)
++ ++.+.+.|.+.+.|.+..++++.+..++.. +++. .+.+.+..+|+.+.++++++.|++++||||+++
T Consensus 86 k~----tv~dql~yla~LkGm~~~e~~~~~~~wLer-~~i~~~~~~kIk~LSKGnqQKIQfisaviHePeLlILDEPFSG 160 (300)
T COG4152 86 KM----TVEDQLKYLAELKGMPKAEIQKKLQAWLER-LEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSG 160 (300)
T ss_pred cC----cHHHHHHHHHHhcCCcHHHHHHHHHHHHHh-ccccccccchHHHhhhhhhHHHHHHHHHhcCCCEEEecCCccC
Confidence 99 999999999999999999888777655422 1211 112223346778889999999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccc
Q 015825 266 RGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKG 330 (399)
Q Consensus 266 lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~ 330 (399)
+||.+.+-+++.+.+++++ ..|+++.+|.++.+-+.|++++.+.+|..+..|+...+
T Consensus 161 LDPVN~elLk~~I~~lk~~--------GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~i 217 (300)
T COG4152 161 LDPVNVELLKDAIFELKEE--------GATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDI 217 (300)
T ss_pred CChhhHHHHHHHHHHHHhc--------CCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHH
Confidence 9999999999988887643 45899999999999999999999999998888775543
|
|
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.1e-22 Score=202.51 Aligned_cols=131 Identities=22% Similarity=0.248 Sum_probs=109.3
Q ss_pred CCceeccEEEEEecCCeeEEEEeeeCCCceEEccc----------ccCCC-----CCCCCCCCccCccccchhhhhccCC
Q 015825 31 TTTVIGDKTYVIAGSDESIGVKIYDRSTGNWLIPA----------VRGIE-----PRPCKGHSAVLLNEDRILVIKKGSS 95 (399)
Q Consensus 31 ~~~~vGD~v~~~~~~~~~~i~~i~~r~~~~l~rp~----------~an~~-----~~~~p~~~~~~l~~dr~L~~~~~~~ 95 (399)
..|+|||||.+.. ++.|+|++|+|| +|.|.||+ +||+| .+..|+|++.++ ||||++++..+
T Consensus 67 ~~~~vGD~V~~~~-~~~g~I~~i~pR-~~~L~R~~~~~~~~~q~iaANvD~vliV~s~~p~~~~~~l--dr~L~~a~~~~ 142 (356)
T PRK01889 67 DRPAVGDWVLLDN-EKKARIVRLLPR-RSLFSRKAAGTRSEEQLIAANVDTVFIVCSLNHDFNLRRI--ERYLALAWESG 142 (356)
T ss_pred CCCccCcEEEEec-CCceEEEEEECC-CceEEcCCCCCCccceeEEEeCCEEEEEEecCCCCChhHH--HHHHHHHHHcC
Confidence 5599999999975 457999999999 89999998 59999 444799999999 99999999999
Q ss_pred CceEEEEeCCCh--H---HHHHHH-HHhCCeEEEeccC-ccC--------CCCcEEEEEcCCCCCHHHHHhhhhhccCCc
Q 015825 96 SDDCLWFLEVDT--P---YVREQK-KVVGAEVVAWSKG-VIG--------NVEKPVVITGPSGVGKGTLISMLMKEFPSM 160 (399)
Q Consensus 96 ~~~~i~~~k~D~--~---~~~~l~-~~~g~~v~~~s~~-~~~--------~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~ 160 (399)
++|+|++||+|. + ..+.+. ...||+++.+|.. ..+ .+|+.++|+|+||+|||||++.|++...+.
T Consensus 143 i~piIVLNK~DL~~~~~~~~~~~~~~~~g~~Vi~vSa~~g~gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~ 222 (356)
T PRK01889 143 AEPVIVLTKADLCEDAEEKIAEVEALAPGVPVLAVSALDGEGLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQK 222 (356)
T ss_pred CCEEEEEEChhcCCCHHHHHHHHHHhCCCCcEEEEECCCCccHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccc
Confidence 999999999993 1 222222 2468999998875 222 268999999999999999999999998887
Q ss_pred ccceee
Q 015825 161 FGFSVS 166 (399)
Q Consensus 161 ~g~~i~ 166 (399)
.| .++
T Consensus 223 ~G-~i~ 227 (356)
T PRK01889 223 TG-AVR 227 (356)
T ss_pred ee-eEE
Confidence 77 554
|
|
| >KOG0707 consensus Guanylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.7e-22 Score=181.74 Aligned_cols=189 Identities=54% Similarity=0.864 Sum_probs=174.3
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcc
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGN 208 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~ 208 (399)
.....+.++|.||||+||+|++++|...++..+|..++||||.++..+.++.+|+|.+...|..+...+.|+|++.+.++
T Consensus 33 ~p~~~~~ivl~gpsg~gk~tll~~l~ee~~~~~~fsvS~ttr~pr~~E~~g~~y~fs~~~~~~s~i~~~~fiE~a~~~gn 112 (231)
T KOG0707|consen 33 PPGDFKPIVLSGPSGVGKSTLLKRLREELGGMFGFSVSHTTRTPRAGEVHGKHYHFSTTEEFLSMIKNNEFIEFATFSGN 112 (231)
T ss_pred CCCCCceEEEeCCCCcchhHHHHHHHHHcCCcceEEecCCCCCCCcccccCCcceeccHHHHHHHhhhhhhhhhhhhhcc
Confidence 34456899999999999999999999999988999999999999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhc
Q 015825 209 LYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQG 288 (399)
Q Consensus 209 ~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~ 288 (399)
+||++.+.+++....++.+++|++.++.+.++...+.++.+++++|+..++.+|+.+++.++++++.++++.+..++...
T Consensus 113 ~yGtsi~av~~~~~~gk~~ildId~qg~~~i~~~~~~~i~i~~~pps~~~~e~rl~~rgte~~~~l~~r~~sa~~e~~~~ 192 (231)
T KOG0707|consen 113 KYGTSIAAVQRLMLSGKVCILDIDLQGVQPIRATSLDAIYIFIKPPSIKILEERLRARGTETEESLLKRLKSAEEEFEIL 192 (231)
T ss_pred cCCchHHHHHHHHhcCCcceeehhhcCceeeecCCCceEEEEecCCcchhHHHHhhccCcchHHHHHHHHHhhhhhhccc
Confidence 99999999988888899999999999999999889999999999999999999999999999999999999777777776
Q ss_pred cCCCcceEEEeC-CCHHHHHHHHHHhhccc
Q 015825 289 KSSGIFDHILYN-DKLEECYENLKKHLGLD 317 (399)
Q Consensus 289 ~~~~~~t~Viv~-hdleea~~~l~~ii~~~ 317 (399)
+.++.||.+++| +++++++..+..++...
T Consensus 193 ~~~g~~d~~~~ns~~lee~~kel~~~~~~~ 222 (231)
T KOG0707|consen 193 ENSGSFDLVIVNSDRLEEAYKELEIFISSD 222 (231)
T ss_pred cCCccccceecCCCchhhhhhhhhhhhhHH
Confidence 667789999999 89999999998876654
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.8e-24 Score=211.41 Aligned_cols=210 Identities=14% Similarity=0.147 Sum_probs=155.1
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--cccccCCeeEEecChHHHHHHHhhhhhH
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVMEKAIKDGKFL 200 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~~i~yvfq~~~lf~~~~~~~~~~ 200 (399)
..+.+....+|++++|+||||||||||+++|+|++++..| .+....... .....+.++|+||++.+|+++ ++.
T Consensus 18 l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G-~I~i~g~~i~~~~~~~r~i~~v~Q~~~l~p~~----tv~ 92 (353)
T PRK10851 18 LNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSG-HIRFHGTDVSRLHARDRKVGFVFQHYALFRHM----TVF 92 (353)
T ss_pred EEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEECCCCCHHHCCEEEEecCcccCCCC----cHH
Confidence 3334445568999999999999999999999999999888 554422211 111234699999999888877 888
Q ss_pred HHHHHhcccc----CCcHHHHH----HHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 201 EFASVHGNLY----GTSVEAVE----AVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 201 E~~~~~~~~~----g~~~~~i~----~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
+++.|....+ +.+..... +.++. +.....+-.+..+....+|+...+.+++.+|++++||||++++|+.++
T Consensus 93 eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGq~QRvalArAL~~~P~llLLDEP~s~LD~~~r 172 (353)
T PRK10851 93 DNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVR 172 (353)
T ss_pred HHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 9888764331 22333222 22222 111122222222333456677777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVAN 344 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~ 344 (399)
+.+++.|+++.++. ..++++++||++++...+++++.+.+|++++.+++.+++..|.+..++.+.+
T Consensus 173 ~~l~~~L~~l~~~~-------g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p~~~~~~~~~g 238 (353)
T PRK10851 173 KELRRWLRQLHEEL-------KFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRFVLEFMG 238 (353)
T ss_pred HHHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchHHHHhcC
Confidence 99999999876542 3389999999999999999999999999999999999999998777776544
|
|
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.2e-23 Score=210.53 Aligned_cols=212 Identities=18% Similarity=0.148 Sum_probs=155.8
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--ccccCCeeEEecChHHHHHHHhhhh
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
.+....+....+|++++|+||||||||||+++|+|+++|..| .+........ ......++|+||++.+|+.+ +
T Consensus 17 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G-~I~~~g~~i~~~~~~~~~i~~v~Q~~~l~~~~----t 91 (369)
T PRK11000 17 VISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSG-DLFIGEKRMNDVPPAERGVGMVFQSYALYPHL----S 91 (369)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEEECCEECCCCCHhHCCEEEEeCCcccCCCC----C
Confidence 333334455568999999999999999999999999999888 5543221111 11234689999999888876 8
Q ss_pred hHHHHHHhccccCCcHHHH----HHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 199 FLEFASVHGNLYGTSVEAV----EAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~i----~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
+.+++.+....++...... .+.++. +....++-.+..+...++|+...+.+++.+|++++||||++++|+.+++.
T Consensus 92 v~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lLLLDEPts~LD~~~~~~ 171 (369)
T PRK11000 92 VAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ 171 (369)
T ss_pred HHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 8888877544444333322 222222 12112222233333345667777889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccC
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVAN 344 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~ 344 (399)
+.+.|+++.++. ..++|+++||++++...+++++.+.+|.+.+.+++.+++..|....++.+.+
T Consensus 172 l~~~L~~l~~~~-------g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~~~~~~~~g 235 (369)
T PRK11000 172 MRIEISRLHKRL-------GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRFVAGFIG 235 (369)
T ss_pred HHHHHHHHHHHh-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHHHHHhcC
Confidence 999998876542 2388999999999999999999999999999999999999888777776544
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.7e-24 Score=207.00 Aligned_cols=207 Identities=20% Similarity=0.181 Sum_probs=157.3
Q ss_pred HHHHhC-CeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc---ccccCCeeEEecChH
Q 015825 113 QKKVVG-AEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR---AMEKDGVHYHFTERS 188 (399)
Q Consensus 113 l~~~~g-~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~---~~~~~~i~yvfq~~~ 188 (399)
+.+.+| ...+..+.++...+|++++|+||||||||||+++|+|+..|..| .+........ ......+||++|++.
T Consensus 10 l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G-~i~i~G~~~~~~~~~~~~~igy~~~~~~ 88 (293)
T COG1131 10 LTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSG-EILVLGYDVVKEPAKVRRRIGYVPQEPS 88 (293)
T ss_pred eEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCce-EEEEcCEeCccCHHHHHhheEEEccCCC
Confidence 445667 56666666677779999999999999999999999999999888 6654332211 122345899999999
Q ss_pred HHHHHHhhhhhHHHHHHhccccCCcH----HHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHH
Q 015825 189 VMEKAIKDGKFLEFASVHGNLYGTSV----EAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERL 263 (399)
Q Consensus 189 lf~~~~~~~~~~E~~~~~~~~~g~~~----~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl 263 (399)
+++.+ ++.|++.|...+|+.+. +.+.+.++. ++....+-....+....++++..+.+|+.+|++++||||+
T Consensus 89 ~~~~l----T~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P~lliLDEPt 164 (293)
T COG1131 89 LYPEL----TVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDPELLILDEPT 164 (293)
T ss_pred CCccc----cHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCCCEEEECCCC
Confidence 89988 99999999999998763 234444433 1111001112222333567778888999999999999999
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 264 RARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 264 ~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
+++|+.++..+++.|+.+..+ +..++++.+|.++++...+++++.+.+|.++..+++.++.
T Consensus 165 ~GLDp~~~~~~~~~l~~l~~~-------g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~ 225 (293)
T COG1131 165 SGLDPESRREIWELLRELAKE-------GGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELK 225 (293)
T ss_pred cCCCHHHHHHHHHHHHHHHhC-------CCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHH
Confidence 999999999999999997753 2248899999999999999999999999999988766543
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.1e-23 Score=198.32 Aligned_cols=212 Identities=16% Similarity=0.088 Sum_probs=149.7
Q ss_pred eEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc----cccCCeeEEecChHHHHHHHh
Q 015825 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA----MEKDGVHYHFTERSVMEKAIK 195 (399)
Q Consensus 120 ~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~----~~~~~i~yvfq~~~lf~~~~~ 195 (399)
..+..+.++...+|++++|+||||||||||+++|+|.++|..| .+....++... ...+.++|++|+......+
T Consensus 15 ~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G-~V~l~g~~i~~~~~kelAk~ia~vpQ~~~~~~~~-- 91 (258)
T COG1120 15 KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSG-EVLLDGKDIASLSPKELAKKLAYVPQSPSAPFGL-- 91 (258)
T ss_pred eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCC-EEEECCCchhhcCHHHHhhhEEEeccCCCCCCCc--
Confidence 4444445556678999999999999999999999999999999 66554433221 1223589999986443333
Q ss_pred hhhhHHHHHHhcc----ccC-CcHH---HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhC
Q 015825 196 DGKFLEFASVHGN----LYG-TSVE---AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (399)
Q Consensus 196 ~~~~~E~~~~~~~----~~g-~~~~---~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~l 266 (399)
++.|.+.+... .++ ...+ .+.++++. +...+.+-....+....+|+...+.+|+.+|++++||||++.+
T Consensus 92 --tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~iLLLDEPTs~L 169 (258)
T COG1120 92 --TVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHL 169 (258)
T ss_pred --EEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCCEEEeCCCcccc
Confidence 55555544322 222 1222 23333322 1111111111112223456666777999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhccc
Q 015825 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVA 343 (399)
Q Consensus 267 D~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~ 343 (399)
|..++-++++.++++.++. ..++|++.||++.|...+++++.+.+|.+...|+|+++++......|+...
T Consensus 170 Di~~Q~evl~ll~~l~~~~-------~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~e~l~~Vygv~ 239 (258)
T COG1120 170 DIAHQIEVLELLRDLNREK-------GLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEENLREVYGVD 239 (258)
T ss_pred CHHHHHHHHHHHHHHHHhc-------CCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCHHHHHHHhCCc
Confidence 9999999999999987652 348999999999999999999999999999999999998887666766554
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.4e-23 Score=209.89 Aligned_cols=218 Identities=16% Similarity=0.106 Sum_probs=161.6
Q ss_pred HHHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCC----Cc--------cccccCCe
Q 015825 113 QKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTR----AP--------RAMEKDGV 180 (399)
Q Consensus 113 l~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr----~~--------~~~~~~~i 180 (399)
+.+.+|..+...+.++...+|++++|+||||||||||+++|+|+++|..| .+..... .. +.....++
T Consensus 30 ~~~~~g~~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G-~I~idG~~~~~~i~~~~~~~l~~~r~~~i 108 (382)
T TIGR03415 30 ILDETGLVVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRG-SVLVKDGDGSIDVANCDAATLRRLRTHRV 108 (382)
T ss_pred HHHhhCCEEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc-EEEECCEecccccccCCHHHHHHHhcCCE
Confidence 44778877777667777789999999999999999999999999999999 5544321 10 01112469
Q ss_pred eEEecChHHHHHHHhhhhhHHHHHHhccccCCcHHHH----HHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCC
Q 015825 181 HYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSVEAV----EAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPS 255 (399)
Q Consensus 181 ~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g~~~~~i----~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~ 255 (399)
+|+||++.+|+++ ++.+++.+.....+...... .+.++. ++....+..+..+....+++...+.+|+.+|+
T Consensus 109 ~~vfQ~~~l~p~~----Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ 184 (382)
T TIGR03415 109 SMVFQKFALMPWL----TVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWADKKPGELSGGMQQRVGLARAFAMDAD 184 (382)
T ss_pred EEEECCCcCCCCC----cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999888876 88888877644444433322 222222 22222222222333345666777779999999
Q ss_pred hHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 256 MEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 256 lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
+++||||++++|+.++.++++.|.++.++. ..++++++||++++.+.+++++.+.+|.+++.+++.++...|.
T Consensus 185 ILLlDEPts~LD~~~r~~l~~~L~~l~~~~-------~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~ 257 (382)
T TIGR03415 185 ILLMDEPFSALDPLIRTQLQDELLELQAKL-------NKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPA 257 (382)
T ss_pred EEEEECCCccCCHHHHHHHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcc
Confidence 999999999999999999999999876543 2389999999999999999999999999999999888888887
Q ss_pred chhhhcc
Q 015825 336 DHSVSKV 342 (399)
Q Consensus 336 ~~~v~~~ 342 (399)
...++.+
T Consensus 258 ~~~~~~~ 264 (382)
T TIGR03415 258 NDYVADF 264 (382)
T ss_pred hHHHHHH
Confidence 6655544
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.88 E-value=2e-23 Score=206.48 Aligned_cols=207 Identities=13% Similarity=0.068 Sum_probs=152.8
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------ccccCCeeEEecChHHHHHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~~i~yvfq~~~lf~~~~ 194 (399)
+..+.++...+|++++|+||||||||||+++|+|+.+|..| .+........ ...+..++|+||++.+|+.+
T Consensus 20 ~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G-~I~i~G~~i~~~~~~~l~~~r~~Ig~v~Q~~~l~~~~- 97 (343)
T TIGR02314 20 ALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSG-SVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSR- 97 (343)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEECCcCCHHHHHHHhcCEEEEECCccccccC-
Confidence 34444455679999999999999999999999999999988 5543222111 11234699999998887765
Q ss_pred hhhhhHHHHHHhccccCCcHHHHHH----HHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 195 KDGKFLEFASVHGNLYGTSVEAVEA----VADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g~~~~~i~~----~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
++.+++.+.....+.+.....+ .++. ++....+..+..+...++|+...+.+|+.+|+++++|||++++|+.
T Consensus 98 ---tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~~~~~~LSgGqkQRV~IARAL~~~P~iLLlDEPts~LD~~ 174 (343)
T TIGR02314 98 ---TVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPA 174 (343)
T ss_pred ---cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHH
Confidence 8888887765444444433332 2222 2222223333334444567777888999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
++..+.+.|+++.++. ..++|+++|+++.+.+.+++++.+.+|+++..+++.+++..|......
T Consensus 175 t~~~i~~lL~~l~~~~-------g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~p~~~~~~ 238 (343)
T TIGR02314 175 TTQSILELLKEINRRL-------GLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPKTPLAQ 238 (343)
T ss_pred HHHHHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCCcHHHH
Confidence 9999999999987543 238999999999999999999999999999989888888777544433
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >PRK14738 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-21 Score=178.14 Aligned_cols=183 Identities=37% Similarity=0.601 Sum_probs=159.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~ 210 (399)
..+++++|+||||||||||++.|....+ .++..++||||+++..+..|..|+|.+...|..++..+.|+++..+.+++|
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~~~-~~~~~~~~ttr~~r~~e~~g~~y~fv~~~~f~~~~~~~~~le~~~~~g~~Y 89 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRERKL-PFHFVVTATTRPKRPGEIDGVDYHFVTPEEFREMISQNELLEWAEVYGNYY 89 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhcCC-cccccccccCCCCCCCCCCCCeeeeCCHHHHHHHHHcCCcEEEEEEcCcee
Confidence 4789999999999999999999986643 466688999999999999999999999999998888889999999999999
Q ss_pred CCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccC
Q 015825 211 GTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKS 290 (399)
Q Consensus 211 g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~ 290 (399)
|++...+...++.|..++++++.+++..++...+....+|+.+|+..++.+|+..|+.++.+.+.+++..+..++...
T Consensus 90 Gt~~~~i~~~~~~g~~vi~~~~~~g~~~l~~~~pd~~~if~~pps~e~l~~Rl~~R~~~~~~~~~~Rl~~~~~e~~~~-- 167 (206)
T PRK14738 90 GVPKAPVRQALASGRDVIVKVDVQGAASIKRLVPEAVFIFLAPPSMDELTRRLELRRTESPEELERRLATAPLELEQL-- 167 (206)
T ss_pred cCCHHHHHHHHHcCCcEEEEcCHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhcc--
Confidence 999999999999999999999999999898888888899999999999999999998778889999999887665432
Q ss_pred CCcceEEEeC--CCHHHHHHHHHHhhccc
Q 015825 291 SGIFDHILYN--DKLEECYENLKKHLGLD 317 (399)
Q Consensus 291 ~~~~t~Viv~--hdleea~~~l~~ii~~~ 317 (399)
..+++++++ .++++++..+.+++...
T Consensus 168 -~~~~~~iId~~~~~e~v~~~i~~~l~~~ 195 (206)
T PRK14738 168 -PEFDYVVVNPEDRLDEAVAQIMAIISAE 195 (206)
T ss_pred -cCCCEEEECCCCCHHHHHHHHHHHHHHH
Confidence 235777777 48999999998877644
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.3e-23 Score=181.77 Aligned_cols=177 Identities=16% Similarity=0.152 Sum_probs=137.5
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccc
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNL 209 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~ 209 (399)
..+|+.++++||||||||||+|.++|...|..| .+....|+.... -...|.+||+..++|++ ++++|++|...+
T Consensus 28 ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G-~i~l~~r~i~gP-gaergvVFQ~~~LlPWl----~~~dNvafgL~l 101 (259)
T COG4525 28 IASGELVVVLGPSGCGKTTLLNLIAGFVTPSRG-SIQLNGRRIEGP-GAERGVVFQNEALLPWL----NVIDNVAFGLQL 101 (259)
T ss_pred ecCCCEEEEEcCCCccHHHHHHHHhcCcCcccc-eEEECCEeccCC-CccceeEeccCccchhh----HHHHHHHHHHHh
Confidence 458999999999999999999999999999988 665544432211 12358999999999999 999999999999
Q ss_pred cCCcHHHHHHHHHcCCceE--Eecc---hhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 015825 210 YGTSVEAVEAVADAGKRCI--LDID---VQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEE 284 (399)
Q Consensus 210 ~g~~~~~i~~~~~~g~~~v--ldld---~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~ 284 (399)
.|.++.+..+...+.+..+ -+.+ +..+....+|+...+.++.++|.+++||||+.++|..+++.+|+.|-.++++
T Consensus 102 ~Gi~k~~R~~~a~q~l~~VgL~~~~~~~i~qLSGGmrQRvGiARALa~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~ 181 (259)
T COG4525 102 RGIEKAQRREIAHQMLALVGLEGAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELLLDLWQE 181 (259)
T ss_pred cCCCHHHHHHHHHHHHHHhCcccccccceEeecchHHHHHHHHHHhhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHH
Confidence 9998877666544311110 0000 0011112456667778999999999999999999999999999999998876
Q ss_pred HHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 285 IKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 285 l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
-.. .+.++|||++||+....++++++.+
T Consensus 182 tgk-------~~lliTH~ieEAlflatrLvvlsp~ 209 (259)
T COG4525 182 TGK-------QVLLITHDIEEALFLATRLVVLSPG 209 (259)
T ss_pred hCC-------eEEEEeccHHHHHhhhheeEEecCC
Confidence 433 6789999999999999999999854
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=4.8e-23 Score=181.43 Aligned_cols=193 Identities=18% Similarity=0.179 Sum_probs=143.3
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceee-----ecCCCccccccCCeeEEecChHHHHHHHhhhhhHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS-----HTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~-----~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~ 202 (399)
.....|++++|+||||+|||||+|.++|...|..| .++ ||..++... -++++||+..+|.++ ++.+|
T Consensus 20 l~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G-~i~i~g~d~t~~~P~~R---PVSmlFQEnNLFaHL----tV~qN 91 (231)
T COG3840 20 LTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASG-EILINGVDHTASPPAER---PVSMLFQENNLFAHL----TVAQN 91 (231)
T ss_pred EeecCCcEEEEECCCCccHHHHHHHHHhccCCCCc-eEEEcCeecCcCCcccC---Chhhhhhccccchhh----hhhhh
Confidence 34568999999999999999999999999999999 554 455444332 278999999999999 88888
Q ss_pred HHHhcc----ccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHH
Q 015825 203 ASVHGN----LYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (399)
Q Consensus 203 ~~~~~~----~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~ 277 (399)
+.+.-+ +....++.+..++.. |..-+++--|..+...++|+...+.+|+.+-++++||||++++||..+.++...
T Consensus 92 igLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~eMl~L 171 (231)
T COG3840 92 IGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLAL 171 (231)
T ss_pred hcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHHHHHHH
Confidence 876432 112223333333222 222122111222233345666677789998889999999999999999999999
Q ss_pred HHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 278 L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
+..+..+-. .|+++|||.++++....++++...+|++...+...+.+....
T Consensus 172 v~~l~~E~~-------~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~~ 222 (231)
T COG3840 172 VSQLCDERK-------MTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222 (231)
T ss_pred HHHHHHhhC-------CEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccCC
Confidence 999887643 399999999999999999999999999998887766665433
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.8e-23 Score=207.38 Aligned_cols=219 Identities=13% Similarity=0.097 Sum_probs=157.9
Q ss_pred HHHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--------ccccCCeeEEe
Q 015825 113 QKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--------AMEKDGVHYHF 184 (399)
Q Consensus 113 l~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--------~~~~~~i~yvf 184 (399)
+.+.+|..+...+.++...+|++++|+||||||||||+++|+|+++|..| .+........ ......++|+|
T Consensus 34 ~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG-~I~i~G~~i~~~~~~~l~~~~~~~igyv~ 112 (400)
T PRK10070 34 ILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRG-QVLIDGVDIAKISDAELREVRRKKIAMVF 112 (400)
T ss_pred HHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCC-EEEECCEECCcCCHHHHHHHHhCCEEEEE
Confidence 44666765555445566779999999999999999999999999999989 5554322111 01124689999
Q ss_pred cChHHHHHHHhhhhhHHHHHHhccccCCcHHHH----HHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHH
Q 015825 185 TERSVMEKAIKDGKFLEFASVHGNLYGTSVEAV----EAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEEL 259 (399)
Q Consensus 185 q~~~lf~~~~~~~~~~E~~~~~~~~~g~~~~~i----~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllL 259 (399)
|++.+|+.+ ++.+++.+....++...... .+.++. ++....+-.+..+...++|+...+.+++.+|++++|
T Consensus 113 Q~~~l~~~~----Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLL 188 (400)
T PRK10070 113 QSFALMPHM----TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDELSGGMRQRVGLARALAINPDILLM 188 (400)
T ss_pred CCCcCCCCC----CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 998888766 78888877544444433322 222222 111112222222333456667777899999999999
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhh
Q 015825 260 EERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSV 339 (399)
Q Consensus 260 DEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v 339 (399)
|||++++|+.+++.+++.|.++.++. ..++|+++|+++++...+++++.+.+|++++.+++.+++..|.+..+
T Consensus 189 DEPts~LD~~~r~~l~~~L~~l~~~~-------g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~v 261 (400)
T PRK10070 189 DEAFSALDPLIRTEMQDELVKLQAKH-------QRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYV 261 (400)
T ss_pred ECCCccCCHHHHHHHHHHHHHHHHHC-------CCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHHH
Confidence 99999999999999999999875432 23889999999999999999999999999988888888888876665
Q ss_pred hccc
Q 015825 340 SKVA 343 (399)
Q Consensus 340 ~~~~ 343 (399)
..+.
T Consensus 262 ~~~~ 265 (400)
T PRK10070 262 RTFF 265 (400)
T ss_pred HHHH
Confidence 5443
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.3e-23 Score=192.23 Aligned_cols=197 Identities=17% Similarity=0.127 Sum_probs=152.3
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC-----ccccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA-----PRAMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~-----~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
+....+|+.++|+||||||||||+++|+|+++|..| .+.....+ .....++.+||+||+++.+ +...++.+
T Consensus 24 ~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G-~v~~~g~~~~~~~~~~~~~~~vG~VfQnpd~q---~~~~tV~~ 99 (235)
T COG1122 24 SLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSG-EVLVDGLDTSSEKSLLELRQKVGLVFQNPDDQ---LFGPTVED 99 (235)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCC-EEEECCeeccchhhHHHhhcceEEEEECcccc---cccCcHHH
Confidence 344568999999999999999999999999999999 44332211 1122234599999998643 22227888
Q ss_pred HHHHhccccCCcHHHHHHHHHc-----CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHH
Q 015825 202 FASVHGNLYGTSVEAVEAVADA-----GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILK 276 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~-----g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~ 276 (399)
.+.|.....+.+.+++++++.+ +...+.+-.+..+...++|+...+.+++..|++++||||++++|+..++++.+
T Consensus 100 evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~ 179 (235)
T COG1122 100 EVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLE 179 (235)
T ss_pred HHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 8999888888888776665544 22222333444444456778888889999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 277 RLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 277 ~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
.+.++..+. ..|+|+++||++.+...+++++.+.+|.++..++|.+++..+
T Consensus 180 ~l~~L~~~~-------~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~~ 230 (235)
T COG1122 180 LLKKLKEEG-------GKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230 (235)
T ss_pred HHHHHHhcC-------CCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhhh
Confidence 999987542 238999999999999999999999999999999887766553
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1e-22 Score=181.80 Aligned_cols=216 Identities=13% Similarity=0.091 Sum_probs=159.9
Q ss_pred HHHHHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeee----cCCCccccccCCeeEEecC
Q 015825 111 REQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSH----TTRAPRAMEKDGVHYHFTE 186 (399)
Q Consensus 111 ~~l~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~----ttr~~~~~~~~~i~yvfq~ 186 (399)
+++.|.++...+....+....+|++++|+|||||||||.+.|+.|+.++..|..... |.-+.....+-|+||++|+
T Consensus 8 ~~l~K~y~kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGigYLpQE 87 (243)
T COG1137 8 ENLAKSYKKRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIGYLPQE 87 (243)
T ss_pred hhhhHhhCCeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCccccccc
Confidence 456788888887777777788999999999999999999999999999999944332 2223333345589999999
Q ss_pred hHHHHHHHhhhhhHHHHHHhccccCCcHH--HHH----HHHHcCCceEEecchh---hHHHHHcCCcceeEEEEcCCChH
Q 015825 187 RSVMEKAIKDGKFLEFASVHGNLYGTSVE--AVE----AVADAGKRCILDIDVQ---GARSVRASPLDAIFIFICPPSME 257 (399)
Q Consensus 187 ~~lf~~~~~~~~~~E~~~~~~~~~g~~~~--~i~----~~~~~g~~~vldld~~---g~~~l~~~~~~~~~ili~~P~ll 257 (399)
++.|..+ ++.+|+............ ..+ +.+++-. +-.+..+ .+....+.+...+.+++.+|.+.
T Consensus 88 ~SIFr~L----tV~dNi~~vlE~~~~d~~~~~~~~~l~~LL~ef~--i~hlr~~~a~sLSGGERRR~EIARaLa~~P~fi 161 (243)
T COG1137 88 ASIFRKL----TVEDNIMAVLEIREKDLKKAERKEELDALLEEFH--ITHLRDSKAYSLSGGERRRVEIARALAANPKFI 161 (243)
T ss_pred chHhhcC----cHHHHHHHHHhhhhcchhHHHHHHHHHHHHHHhc--hHHHhcCcccccccchHHHHHHHHHHhcCCCEE
Confidence 9999988 888887665544332222 111 2222211 0000000 00001233445666999999999
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcch
Q 015825 258 ELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADH 337 (399)
Q Consensus 258 lLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~ 337 (399)
+||||+++.||..-.+|++.++.++.. ..-++|..|+..|++..+++.+.+.+|.+...|+|.++.++|.++
T Consensus 162 LLDEPFAGVDPiaV~dIq~iI~~L~~r--------giGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~~Vr 233 (243)
T COG1137 162 LLDEPFAGVDPIAVIDIQRIIKHLKDR--------GIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNEDVR 233 (243)
T ss_pred EecCCccCCCchhHHHHHHHHHHHHhC--------CceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcChhhh
Confidence 999999999999999999999987643 336678888999999999999999999999999999999999877
Q ss_pred hhh
Q 015825 338 SVS 340 (399)
Q Consensus 338 ~v~ 340 (399)
.++
T Consensus 234 ~~Y 236 (243)
T COG1137 234 RVY 236 (243)
T ss_pred hhc
Confidence 765
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-23 Score=185.16 Aligned_cols=192 Identities=16% Similarity=0.102 Sum_probs=150.1
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeee---cCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSH---TTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~---ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~ 204 (399)
+....|++++++|||||||||++++|+.++.|..|..... +.+.+. ..+.++|.+|....+|..+ +..|++.
T Consensus 23 F~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~-~vrr~IGVl~~e~glY~Rl----T~rEnl~ 97 (245)
T COG4555 23 FEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPS-FVRRKIGVLFGERGLYARL----TARENLK 97 (245)
T ss_pred EEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChH-HHhhhcceecCCcChhhhh----hHHHHHH
Confidence 4456999999999999999999999999999999943332 233332 2345689999888889888 9999999
Q ss_pred HhccccCCcHHHHHHHHHcCCceEEecc------hhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHH
Q 015825 205 VHGNLYGTSVEAVEAVADAGKRCILDID------VQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRL 278 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~~~~~g~~~vldld------~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L 278 (399)
|.+.+|+....++++..++-. ..+++. .-++....+|+...+.+++++|++.++|||++++|..+...+++.+
T Consensus 98 ~Fa~L~~l~~~~~kari~~l~-k~l~l~~~~~rRv~~~S~G~kqkV~iARAlvh~P~i~vlDEP~sGLDi~~~r~~~dfi 176 (245)
T COG4555 98 YFARLNGLSRKEIKARIAELS-KRLQLLEYLDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFHDFI 176 (245)
T ss_pred HHHHHhhhhhhHHHHHHHHHH-HHhChHHHHHHHHhhhchhhHHHHHHHHHHhcCCCeEEEcCCCCCccHHHHHHHHHHH
Confidence 999999998887776654411 111211 1111222456677778999999999999999999999999999998
Q ss_pred HHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 279 RNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 279 ~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
.+++.+ .-.+|+.+|.++|+-+.||+++.+.+|.++..++++.+...
T Consensus 177 ~q~k~e--------gr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 177 KQLKNE--------GRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred HHhhcC--------CcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 886642 22788999999999999999999999999999998876644
|
|
| >TIGR03263 guanyl_kin guanylate kinase | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.1e-20 Score=168.30 Aligned_cols=179 Identities=51% Similarity=0.785 Sum_probs=155.3
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccCC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGT 212 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g~ 212 (399)
|++++|+||||||||||++.|++..+.. ...++++||++...+..+..|+|.+...|......+.+.++..+.+++|+.
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~-~~~~~~~tr~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~ 79 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNL-KFSISATTRKPRPGEVDGVDYFFVSKEEFEEMIAAGEFLEWAEVHGNYYGT 79 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccc-cccccceeeCCCCCCcCCcEEEEecHHHHHHHHHcCCcEEEEEECCeeeCC
Confidence 6899999999999999999999987653 336678999988888888899999988888877788888888888899999
Q ss_pred cHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCC
Q 015825 213 SVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSG 292 (399)
Q Consensus 213 ~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~ 292 (399)
....+.+.+.++..+++|++..+...++........+++.+|+.+.+.+|+..++..+.+++.+++.....++.. .+
T Consensus 80 ~~~~i~~~~~~g~~vi~d~~~~~~~~~~~~~~~~~~i~~~~~~~e~~~~Rl~~r~~~~~~~i~~rl~~~~~~~~~---~~ 156 (180)
T TIGR03263 80 PKSPVEEALAAGKDVLLEIDVQGARQVKKKFPDAVSIFILPPSLEELERRLRKRGTDSEEVIERRLAKAKKEIAH---AD 156 (180)
T ss_pred cHHHHHHHHHCCCeEEEECCHHHHHHHHHhCCCcEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhc---cc
Confidence 999999999999999999999998888877777778888889899999999999888889999999887655543 45
Q ss_pred cceEEEeCCCHHHHHHHHHHhhc
Q 015825 293 IFDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 293 ~~t~Viv~hdleea~~~l~~ii~ 315 (399)
.||.++.|+++++++..+..++.
T Consensus 157 ~~d~~i~n~~~~~~~~~l~~~~~ 179 (180)
T TIGR03263 157 EFDYVIVNDDLEKAVEELKSIIL 179 (180)
T ss_pred cCcEEEECCCHHHHHHHHHHHHh
Confidence 69999999999999999988653
|
Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-22 Score=201.24 Aligned_cols=205 Identities=15% Similarity=0.109 Sum_probs=151.4
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--------cccccCCeeEEecChHHHHHHHhhhh
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--------RAMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--------~~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
+....+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||++.+|+++ +
T Consensus 18 sl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G-~I~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~----t 92 (352)
T PRK11144 18 NLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKG-RIVLNGRVLFDAEKGICLPPEKRRIGYVFQDARLFPHY----K 92 (352)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEccccccccccchhhCCEEEEcCCcccCCCC----c
Confidence 344568999999999999999999999999999888 554322111 111234689999998888776 7
Q ss_pred hHHHHHHhccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHH
Q 015825 199 FLEFASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~ 277 (399)
+.+++.+... ....+.+.+.++. +....++..+..+....+++...+.+++.+|++++||||++++|+.+++.+.+.
T Consensus 93 v~enl~~~~~--~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qRvalaraL~~~p~llLLDEPts~LD~~~~~~l~~~ 170 (352)
T PRK11144 93 VRGNLRYGMA--KSMVAQFDKIVALLGIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPY 170 (352)
T ss_pred HHHHHHhhhh--hhhHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 8888766422 1122333333332 221122222222333456667777899999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccCe
Q 015825 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVANK 345 (399)
Q Consensus 278 L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~~ 345 (399)
|+++.++. ..++++++||++++...+++++.+.+|++.+.+++.+++..|....++.+.+.
T Consensus 171 L~~l~~~~-------g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~~~~~~~~~g~ 231 (352)
T PRK11144 171 LERLAREI-------NIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSAMRPWLPKEEQ 231 (352)
T ss_pred HHHHHHhc-------CCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcchhhhhcccCc
Confidence 98876432 23889999999999999999999999999999999999999988887776553
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.3e-23 Score=191.82 Aligned_cols=216 Identities=14% Similarity=0.133 Sum_probs=157.9
Q ss_pred HHHHHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeee----cCCCccccccCCeeEEecC
Q 015825 111 REQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSH----TTRAPRAMEKDGVHYHFTE 186 (399)
Q Consensus 111 ~~l~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~----ttr~~~~~~~~~i~yvfq~ 186 (399)
+++.+.+|--+...+.++...+|++++|+|||||||||++|+|.|.++|+.|..+.. +.-++....+.|+..-||.
T Consensus 8 ~~l~k~FGGl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~RTFQ~ 87 (250)
T COG0411 8 RGLSKRFGGLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIARTFQI 87 (250)
T ss_pred ccceeecCCEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccceeeccc
Confidence 345566776666666667778999999999999999999999999999999944432 2333444445678888999
Q ss_pred hHHHHHHHhhhhhHHHHHHhcccc-------CC-----cHHHHHHHHHcCCceEEecchhh------HHHHHcCCcceeE
Q 015825 187 RSVMEKAIKDGKFLEFASVHGNLY-------GT-----SVEAVEAVADAGKRCILDIDVQG------ARSVRASPLDAIF 248 (399)
Q Consensus 187 ~~lf~~~~~~~~~~E~~~~~~~~~-------g~-----~~~~i~~~~~~g~~~vldld~~g------~~~l~~~~~~~~~ 248 (399)
..+|+.+ ++.||+......+ +. ...+..+..... ...+.+.... +...++..+..+.
T Consensus 88 ~rlF~~l----TVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~-Le~vgL~~~a~~~A~~LsyG~qR~LEIAr 162 (250)
T COG0411 88 TRLFPGL----TVLENVAVGAHARLGLSGLLGRPRARKEEREARERAREL-LEFVGLGELADRPAGNLSYGQQRRLEIAR 162 (250)
T ss_pred ccccCCC----cHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHH-HHHcCCchhhcchhhcCChhHhHHHHHHH
Confidence 9999998 9999987653321 11 112222211111 1112221111 1111334456677
Q ss_pred EEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCc
Q 015825 249 IFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSP 328 (399)
Q Consensus 249 ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~ 328 (399)
++++.|++++||||.+++.+...+++.+.+++++++. ..+++++.||++-++..+++++++..|+++.+|+|.
T Consensus 163 ALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~-------g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~ 235 (250)
T COG0411 163 ALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRG-------GVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPE 235 (250)
T ss_pred HHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcC-------CcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHH
Confidence 9999999999999999999988899999999877542 348899999999999999999999999999999999
Q ss_pred cccCCCcchh
Q 015825 329 KGIDLPADHS 338 (399)
Q Consensus 329 ~~~~~p~~~~ 338 (399)
++.+.|.+..
T Consensus 236 eV~~dp~Vie 245 (250)
T COG0411 236 EVRNNPRVIE 245 (250)
T ss_pred HHhcCHHhHH
Confidence 9999987654
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.6e-22 Score=197.53 Aligned_cols=203 Identities=16% Similarity=0.105 Sum_probs=146.6
Q ss_pred HhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc---ccccCCeeEEecChHHHHH
Q 015825 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR---AMEKDGVHYHFTERSVMEK 192 (399)
Q Consensus 116 ~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~---~~~~~~i~yvfq~~~lf~~ 192 (399)
.++-..+..+.++...+|++++|+||||||||||+++|+|+++|..| .+.....+.. ......++|+||++.+|+.
T Consensus 16 ~~~~~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G-~v~i~G~~~~~~~~~~~~~ig~v~q~~~~~~~ 94 (306)
T PRK13537 16 RYGDKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAG-SISLCGEPVPSRARHARQRVGVVPQFDNLDPD 94 (306)
T ss_pred EECCeEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEecccchHHHHhcEEEEeccCcCCCC
Confidence 34433344444455678999999999999999999999999999888 5543222211 1123468999999887776
Q ss_pred HHhhhhhHHHHHHhccccCCcHHHHHHHHHcCCceEEec------chhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhC
Q 015825 193 AIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDI------DVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (399)
Q Consensus 193 ~~~~~~~~E~~~~~~~~~g~~~~~i~~~~~~g~~~vldl------d~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~l 266 (399)
+ ++.|++.+.+..|+.+.......+.+... .+++ ....+....+++...+.+++.+|++++||||++++
T Consensus 95 ~----tv~e~l~~~~~~~~~~~~~~~~~~~~~l~-~~~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~lllLDEPt~gL 169 (306)
T PRK13537 95 F----TVRENLLVFGRYFGLSAAAARALVPPLLE-FAKLENKADAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGL 169 (306)
T ss_pred C----cHHHHHHHHHHHcCCCHHHHHHHHHHHHH-HcCCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCcCC
Confidence 6 88899887776777654433322211110 1111 11222223456677778999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 267 D~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
|+.++..+++.++++.++ ..++++++|+++++...+++++.+.+|.++..+++.++..
T Consensus 170 D~~~~~~l~~~l~~l~~~--------g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 227 (306)
T PRK13537 170 DPQARHLMWERLRSLLAR--------GKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIE 227 (306)
T ss_pred CHHHHHHHHHHHHHHHhC--------CCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 999999999999886431 3488999999999999999999999999998888766543
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.85 E-value=7e-22 Score=181.89 Aligned_cols=200 Identities=17% Similarity=0.117 Sum_probs=141.3
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc-----cccCCeeEEecChHH--HHHHHhhhhh
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA-----MEKDGVHYHFTERSV--MEKAIKDGKF 199 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~-----~~~~~i~yvfq~~~l--f~~~~~~~~~ 199 (399)
+.+..+|++++|+|+||||||||.++|+|+.++..| .+.....+... ...+.+.++||++.- -|.. ++
T Consensus 27 S~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G-~I~~~G~~~~~~~~~~~~~~~VQmVFQDp~~SLnP~~----tv 101 (252)
T COG1124 27 SLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSG-SILLDGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRR----TV 101 (252)
T ss_pred eEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCc-eEEECCcccCccccchhhccceeEEecCCccccCcch----hH
Confidence 345569999999999999999999999999999999 66543322211 234568899999642 2333 33
Q ss_pred HHHHHHhccccCCcH--HHHHHHHHc-CC-ceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHH
Q 015825 200 LEFASVHGNLYGTSV--EAVEAVADA-GK-RCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQIL 275 (399)
Q Consensus 200 ~E~~~~~~~~~g~~~--~~i~~~~~~-g~-~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~ 275 (399)
.+.+.-.....+..+ ..+.+.++. |+ ..+++.-|..+...++|+...+.+++.+|+++++|||++++|...+.++.
T Consensus 102 ~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~Il 181 (252)
T COG1124 102 GRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQIL 181 (252)
T ss_pred HHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHH
Confidence 333322222223322 223333322 11 01111122223334566777778999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchh
Q 015825 276 KRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHS 338 (399)
Q Consensus 276 ~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~ 338 (399)
..+.+++++.+ .++++++||+..+...|+++++|.+|.++......++...|....
T Consensus 182 nlL~~l~~~~~-------lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~~~h~y 237 (252)
T COG1124 182 NLLLELKKERG-------LTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSHPY 237 (252)
T ss_pred HHHHHHHHhcC-------ceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcCCccHH
Confidence 99999887753 389999999999999999999999999999888888887765443
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.6e-22 Score=185.48 Aligned_cols=183 Identities=18% Similarity=0.162 Sum_probs=134.4
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeec---CCC----ccccccCCeeEEecChHHHHHHHhhhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHT---TRA----PRAMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~t---tr~----~~~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
.++...+|++++|+||||||||||+++|.++..|..|...... +.. ........+||+||++.+++.+ +
T Consensus 24 v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R~~~iGfvFQ~~nLl~~l----t 99 (226)
T COG1136 24 VNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDL----T 99 (226)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHHHHhEEEECccCCCCCCC----C
Confidence 3355679999999999999999999999999999888323221 111 1123345699999999999888 9
Q ss_pred hHHHHHHhccccCCcHH----HHHHHHHc-CCceEEe-cchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 199 FLEFASVHGNLYGTSVE----AVEAVADA-GKRCILD-IDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~----~i~~~~~~-g~~~vld-ld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
+.||+.+...+.+.+.. .+...++. ++..... -.|..+...++|++..+.+++.+|++.+.||||.++|..+.+
T Consensus 100 v~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~ 179 (226)
T COG1136 100 VLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAK 179 (226)
T ss_pred HHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCCCeEEeeCccccCChHHHH
Confidence 99999876555554432 22222222 2221111 223344445677788888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCe
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSI 320 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~ 320 (399)
.+.+.+.++.++. ..++|+||||.+-|. .+++++.+.+|.
T Consensus 180 ~V~~ll~~~~~~~-------g~tii~VTHd~~lA~-~~dr~i~l~dG~ 219 (226)
T COG1136 180 EVLELLRELNKER-------GKTIIMVTHDPELAK-YADRVIELKDGK 219 (226)
T ss_pred HHHHHHHHHHHhc-------CCEEEEEcCCHHHHH-hCCEEEEEeCCe
Confidence 9999999987653 338999999986665 899999998886
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.9e-22 Score=195.49 Aligned_cols=197 Identities=19% Similarity=0.105 Sum_probs=140.9
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc---cccccCCeeEEecChHHHHHHHhhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
+..+.+....+|++++|+||||||||||+++|+|+++|..| .+....... .......++|+||+..+|+.+ +
T Consensus 8 ~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~----t 82 (302)
T TIGR01188 8 AVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSG-TARVAGYDVVREPRKVRRSIGIVPQYASVDEDL----T 82 (302)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEcccCHHHHHhhcEEecCCCCCCCCC----c
Confidence 33334455679999999999999999999999999999888 555422111 111234589999998777765 7
Q ss_pred hHHHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 199 FLEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
+.|++.+....++..... +.+.++. +.....+-.+..+....++++..+.+++.+|++++||||++++|+.+++.
T Consensus 83 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~ 162 (302)
T TIGR01188 83 GRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRA 162 (302)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence 788887765556554332 2222222 11111111122222334566777789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
+++.++++.++ ..++++++|+++++...+++++.+.+|+++..+++.++.
T Consensus 163 l~~~l~~~~~~--------g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~ 212 (302)
T TIGR01188 163 IWDYIRALKEE--------GVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELK 212 (302)
T ss_pred HHHHHHHHHhC--------CCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 99999886532 238899999999999999999999999998877765543
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.84 E-value=6.2e-22 Score=185.57 Aligned_cols=195 Identities=12% Similarity=0.145 Sum_probs=134.7
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc-cccCCeeEEecChHH---HHHHHhhhhhHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA-MEKDGVHYHFTERSV---MEKAIKDGKFLE 201 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~-~~~~~i~yvfq~~~l---f~~~~~~~~~~E 201 (399)
.+....+|++++|+||||||||||++.|+|+++|..| .+.....+... .....+||+||...+ ||- ++.|
T Consensus 23 i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G-~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~-----tV~d 96 (254)
T COG1121 23 ISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSG-EIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPI-----TVKD 96 (254)
T ss_pred cEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcc-eEEEccccccccccCCeEEEcCcccccCCCCCc-----CHHH
Confidence 3455679999999999999999999999999999999 66543332211 112359999996522 331 5666
Q ss_pred HHHHhcc----ccCC----cHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 202 FASVHGN----LYGT----SVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 202 ~~~~~~~----~~g~----~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
++..... +++. .++.+.++++. ++..+.+-....+...+.|+...+.+|+.+|++++||||+.+.|+.++.
T Consensus 97 ~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~ 176 (254)
T COG1121 97 VVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQK 176 (254)
T ss_pred HHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHH
Confidence 6554321 1111 12444444433 2211111111112223455566677999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
.+.+.|.+++++ .+++++++||+..+.+.+++++.+.+ .+...+++++.++.+.
T Consensus 177 ~i~~lL~~l~~e--------g~tIl~vtHDL~~v~~~~D~vi~Ln~-~~~~~G~~~~~~~~~~ 230 (254)
T COG1121 177 EIYDLLKELRQE--------GKTVLMVTHDLGLVMAYFDRVICLNR-HLIASGPPEEVLTEEN 230 (254)
T ss_pred HHHHHHHHHHHC--------CCEEEEEeCCcHHhHhhCCEEEEEcC-eeEeccChhhccCHHH
Confidence 999999998754 45999999999999999999887775 5677788887776654
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.9e-22 Score=197.37 Aligned_cols=205 Identities=17% Similarity=0.129 Sum_probs=146.4
Q ss_pred HHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc---cccccCCeeEEecChHHHH
Q 015825 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVME 191 (399)
Q Consensus 115 ~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~~i~yvfq~~~lf~ 191 (399)
+.++-..+..+.++...+|++++|+||||||||||+++|+|+++|..| .+.....+. .......++|+||+..+++
T Consensus 49 k~y~~~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G-~i~i~G~~~~~~~~~~~~~ig~v~q~~~~~~ 127 (340)
T PRK13536 49 KSYGDKAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAG-KITVLGVPVPARARLARARIGVVPQFDNLDL 127 (340)
T ss_pred EEECCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCce-EEEECCEECCcchHHHhccEEEEeCCccCCC
Confidence 344444444444455679999999999999999999999999999888 555432221 1122346999999987776
Q ss_pred HHHhhhhhHHHHHHhccccCCcHHHHHH----HHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhC
Q 015825 192 KAIKDGKFLEFASVHGNLYGTSVEAVEA----VADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (399)
Q Consensus 192 ~~~~~~~~~E~~~~~~~~~g~~~~~i~~----~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~l 266 (399)
.+ ++.+++.+.+..|+.......+ .++. ++....+-.+..+....++++..+.+++.+|++++||||++++
T Consensus 128 ~~----tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lLiLDEPt~gL 203 (340)
T PRK13536 128 EF----TVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGL 203 (340)
T ss_pred CC----cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCC
Confidence 65 7888887766666654332222 2221 1111111112222333456677778999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 267 D~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
|+.++..+++.|.++.++ ..++++++|+++++...+++++.+.+|+++..+++.++..
T Consensus 204 D~~~r~~l~~~l~~l~~~--------g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~ 261 (340)
T PRK13536 204 DPHARHLIWERLRSLLAR--------GKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALID 261 (340)
T ss_pred CHHHHHHHHHHHHHHHhC--------CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 999999999999987532 2389999999999999999999999999998888776643
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-21 Score=188.23 Aligned_cols=215 Identities=14% Similarity=0.107 Sum_probs=149.2
Q ss_pred HHHHHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-----c---cccCCeeE
Q 015825 111 REQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-----A---MEKDGVHY 182 (399)
Q Consensus 111 ~~l~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-----~---~~~~~i~y 182 (399)
.++.+.++...+..+.+....+|++++|+||||||||||+++|+|++++..| .+........ . .....++|
T Consensus 28 ~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G-~i~i~g~~~~~~~~~~~~~~~~~~i~~ 106 (269)
T cd03294 28 EEILKKTGQTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSG-KVLIDGQDIAAMSRKELRELRRKKISM 106 (269)
T ss_pred hhhhhhcCCceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe-EEEECCEEccccChhhhhhhhcCcEEE
Confidence 3556777776666666666779999999999999999999999999999888 5543221110 0 11245899
Q ss_pred EecChHHHHHHHhhhhhHHHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChH
Q 015825 183 HFTERSVMEKAIKDGKFLEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSME 257 (399)
Q Consensus 183 vfq~~~lf~~~~~~~~~~E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~ll 257 (399)
+||++.+|+.+ ++.+++.+....++..... +.+.++. +....++-.+..+....+++...+.+++.+|+++
T Consensus 107 v~q~~~~~~~~----tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~il 182 (269)
T cd03294 107 VFQSFALLPHR----TVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYPDELSGGMQQRVGLARALAVDPDIL 182 (269)
T ss_pred EecCcccCCCC----cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 99998776554 6777776543333322222 2222222 1111111111222233456666777999999999
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcch
Q 015825 258 ELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADH 337 (399)
Q Consensus 258 lLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~ 337 (399)
+||||++++|+.+++.+.+.+.++..+. ..++++++|+++++...+++++.+.+|.+...+++.++++.|...
T Consensus 183 lLDEPt~~LD~~~~~~l~~~l~~~~~~~-------g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~ 255 (269)
T cd03294 183 LMDEAFSALDPLIRREMQDELLRLQAEL-------QKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPAND 255 (269)
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCcCcH
Confidence 9999999999999999999998865431 238899999999998899999999999988888777776665433
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.1e-22 Score=195.55 Aligned_cols=203 Identities=14% Similarity=0.112 Sum_probs=145.2
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------ccccCCeeEEecChHHHHHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~~i~yvfq~~~lf~~~~ 194 (399)
+..+.++...+|++++|+||||||||||+++|+|+++|..| .+........ ...+..++|+||++.+|+.+
T Consensus 20 il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G-~I~~~g~~i~~~~~~~~~~~~~~ig~v~q~~~l~~~~- 97 (343)
T PRK11153 20 ALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSG-RVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSR- 97 (343)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEEECCEECCcCCHHHHHHHhcCEEEEeCCCccCCCC-
Confidence 33334455679999999999999999999999999999888 5543221111 11134689999998777655
Q ss_pred hhhhhHHHHHHhccccCCcHHHHH----HHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 195 KDGKFLEFASVHGNLYGTSVEAVE----AVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g~~~~~i~----~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
++.+++.+....++.+..... +.++. +.....+-.+..+...++++...+.+++.+|++++||||++++|+.
T Consensus 98 ---tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~iLlLDEPts~LD~~ 174 (343)
T PRK11153 98 ---TVFDNVALPLELAGTPKAEIKARVTELLELVGLSDKADRYPAQLSGGQKQRVAIARALASNPKVLLCDEATSALDPA 174 (343)
T ss_pred ---cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHH
Confidence 778887765444444433222 22222 1111112222223334566677778999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcc
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPAD 336 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~ 336 (399)
++..+.+.|+++.++. ..++++++|+++++...+++++.+.+|.++..+++.+++..|..
T Consensus 175 ~~~~l~~~L~~l~~~~-------g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~ 234 (343)
T PRK11153 175 TTRSILELLKDINREL-------GLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPKH 234 (343)
T ss_pred HHHHHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCc
Confidence 9999999999875432 23889999999999999999999999999888887777766543
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.3e-21 Score=179.12 Aligned_cols=195 Identities=17% Similarity=0.181 Sum_probs=141.1
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-------cccccCCeeEEecChHHHHHHHh
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-------RAMEKDGVHYHFTERSVMEKAIK 195 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-------~~~~~~~i~yvfq~~~lf~~~~~ 195 (399)
....+....+|++++|+||||||||||+++|.++..+..| .+....... ....+..+||+||.+.+.+.+
T Consensus 20 L~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G-~i~~~g~~i~~~~~k~lr~~r~~iGmIfQ~~nLv~r~-- 96 (258)
T COG3638 20 LKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSG-EILFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRL-- 96 (258)
T ss_pred eeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcc-eEEecccchhccchHHHHHHHHhceeEeccCCccccc--
Confidence 3333445679999999999999999999999999999999 554322111 122245699999999988877
Q ss_pred hhhhHHHHHHhcc--------ccCCc-HHHHHHHHHcC-CceEEecchhhHHHH---HcCCcceeEEEEcCCChHHHHHH
Q 015825 196 DGKFLEFASVHGN--------LYGTS-VEAVEAVADAG-KRCILDIDVQGARSV---RASPLDAIFIFICPPSMEELEER 262 (399)
Q Consensus 196 ~~~~~E~~~~~~~--------~~g~~-~~~i~~~~~~g-~~~vldld~~g~~~l---~~~~~~~~~ili~~P~lllLDEp 262 (399)
++++|+..+.. +++.. +++...++..- ..-+++...+....+ ++|++..+.+|+.+|++.+.|||
T Consensus 97 --sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~A~qra~~LSGGQQQRVaIARaL~Q~pkiILADEP 174 (258)
T COG3638 97 --SVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEP 174 (258)
T ss_pred --HHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHHHHHHhccCCcchhHHHHHHHHHhcCCCEEecCCc
Confidence 88888754322 12222 33333333221 111111111111112 45667777899999999999999
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcc
Q 015825 263 LRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPK 329 (399)
Q Consensus 263 l~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~ 329 (399)
++++||.+.+.+++.|+...++. ..|+|+.-|+++-|.+.++|++.+..|+++..+++.+
T Consensus 175 vasLDp~~a~~Vm~~l~~in~~~-------g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~e 234 (258)
T COG3638 175 VASLDPESAKKVMDILKDINQED-------GITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASE 234 (258)
T ss_pred ccccChhhHHHHHHHHHHHHHHc-------CCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhh
Confidence 99999999999999999987653 4488999999999999999999999999999998765
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.9e-21 Score=182.82 Aligned_cols=197 Identities=15% Similarity=0.091 Sum_probs=137.1
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------ccccCCeeEEecChHHHHHHHh
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERSVMEKAIK 195 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~~i~yvfq~~~lf~~~~~ 195 (399)
....+....+|++++|+||||||||||+++|+|+++|..| .+........ ......++|+||++.+|+.+
T Consensus 16 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-- 92 (235)
T cd03261 16 LKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSG-EVLIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSL-- 92 (235)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEccccChhhHHHHhcceEEEccCcccCCCC--
Confidence 3334455679999999999999999999999999999888 5543221110 11234689999998777654
Q ss_pred hhhhHHHHHHhcccc-CCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 196 DGKFLEFASVHGNLY-GTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 196 ~~~~~E~~~~~~~~~-g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
++.+++.+....+ +..... +.+.++. +.....+-.+..+....++++..+.+++.+|++++||||++++|+.
T Consensus 93 --tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p~llllDEPt~~LD~~ 170 (235)
T cd03261 93 --TVFENVAFPLREHTRLSEEEIREIVLEKLEAVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPI 170 (235)
T ss_pred --cHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHH
Confidence 6777776542222 222222 2222222 1111122222223334566677778999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
+++.+.+.++++.++. ..++++++|+++++...+++++.+.+|.+...+++.++.
T Consensus 171 ~~~~l~~~l~~~~~~~-------~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 225 (235)
T cd03261 171 ASGVIDDLIRSLKKEL-------GLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELR 225 (235)
T ss_pred HHHHHHHHHHHHHHhc-------CcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHc
Confidence 9999999998875431 238899999999999999999999999888777665544
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.4e-19 Score=166.37 Aligned_cols=183 Identities=46% Similarity=0.739 Sum_probs=158.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~ 210 (399)
.+|++++|+||||||||||++.|++.++ .+...++++||+++..+..+..|.|.+...|..+...+.+.++..+.++.|
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~-~~~~~~~~~tr~p~~ge~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y 81 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP-NLQLSVSATTRAPRPGEVDGVDYFFVSKEEFEEMIENGEFLEWAEVFGNYY 81 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc-cceeccCccccCCCCCCcCCCeeEEcCHHHHHHHHHcCCcEEEEEECCccc
Confidence 4799999999999999999999999876 455577889999988888888999998888888777777887777778889
Q ss_pred CCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccC
Q 015825 211 GTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKS 290 (399)
Q Consensus 211 g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~ 290 (399)
+.+...+...+..+..+++|+++++...++........+++.+|+...+.+|+..|+..+.+.+++++.....+...
T Consensus 82 ~~~~~~i~~~l~~g~~vi~dl~~~g~~~l~~~~~~~~~I~i~~~s~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~--- 158 (205)
T PRK00300 82 GTPRSPVEEALAAGKDVLLEIDWQGARQVKKKMPDAVSIFILPPSLEELERRLRGRGTDSEEVIARRLAKAREEIAH--- 158 (205)
T ss_pred cCcHHHHHHHHHcCCeEEEeCCHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHh---
Confidence 99999999999999999999999998888887777788999999999999999999988899999999887665543
Q ss_pred CCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 291 SGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 291 ~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
.+.|+++++|.+++++...+..++...
T Consensus 159 ~~~~d~vi~n~~~e~~~~~l~~il~~~ 185 (205)
T PRK00300 159 ASEYDYVIVNDDLDTALEELKAIIRAE 185 (205)
T ss_pred HHhCCEEEECCCHHHHHHHHHHHHHHH
Confidence 245799999999999999999987665
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-21 Score=193.86 Aligned_cols=202 Identities=16% Similarity=0.090 Sum_probs=145.6
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--------cccccCCeeEEecChHHHHHHHhhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--------RAMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--------~~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
.+....+|++++|+||||||||||+++|+|++++..| .+....+.. .......++|+||++.+|+.+
T Consensus 16 isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G-~I~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~---- 90 (354)
T TIGR02142 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEG-EIVLNGRTLFDSRKGIFLPPEKRRIGYVFQEARLFPHL---- 90 (354)
T ss_pred EEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECccCccccccchhhCCeEEEecCCccCCCC----
Confidence 3345568999999999999999999999999999888 554322111 011234689999998888766
Q ss_pred hhHHHHHHhccccCCc--HHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHH
Q 015825 198 KFLEFASVHGNLYGTS--VEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQI 274 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~~--~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i 274 (399)
++.+++.+....+... ...+.+.++. +....++-.+..+....+++...+.+++.+|++++||||++++|+.+++.+
T Consensus 91 tv~enl~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGqkqRvalAraL~~~p~lllLDEPts~LD~~~~~~l 170 (354)
T TIGR02142 91 SVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEI 170 (354)
T ss_pred cHHHHHHHHhhccChhHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHH
Confidence 7888877643222111 1122333322 121122222233333456677777899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhh
Q 015825 275 LKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSV 339 (399)
Q Consensus 275 ~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v 339 (399)
.+.|+++.++. ..++++++|+++++...+++++.+.+|.+...+++.+++..|....+
T Consensus 171 ~~~L~~l~~~~-------g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~ 228 (354)
T TIGR02142 171 LPYLERLHAEF-------GIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPWL 228 (354)
T ss_pred HHHHHHHHHhc-------CCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCcccc
Confidence 99999876432 23889999999999999999999999999988888888887765544
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-21 Score=180.38 Aligned_cols=189 Identities=15% Similarity=0.151 Sum_probs=140.4
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeee-------cCCC-ccccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSH-------TTRA-PRAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~-------ttr~-~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
...+++|-|+||+|||||+|+|+|+..|..| .|.. +.+. .-+.+++.+||+||+..+|+++ ++.-|+
T Consensus 23 ~~GvTAlFG~SGsGKTslin~IaGL~rPdeG-~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~----tVrgNL 97 (352)
T COG4148 23 ARGITALFGPSGSGKTSLINMIAGLTRPDEG-RIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHY----TVRGNL 97 (352)
T ss_pred CCceEEEecCCCCChhhHHHHHhccCCcccc-EEEECCEEeecccCCcccChhhheeeeEeeccccccce----EEecch
Confidence 3389999999999999999999999999988 4432 1111 1233445699999999999999 888888
Q ss_pred HHhccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAK 282 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~ 282 (399)
.|..... ......+.+.- |...+++--|..+....+|++..-.++++.|++++||||++++|.....++.-.++++.
T Consensus 98 ~YG~~~~--~~~~fd~iv~lLGI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~RK~EilpylERL~ 175 (352)
T COG4148 98 RYGMWKS--MRAQFDQLVALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLR 175 (352)
T ss_pred hhhhccc--chHhHHHHHHHhCcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccchhhHHHHHHHHHH
Confidence 7753321 22222222211 22222222222222233555556669999999999999999999999999999999998
Q ss_pred HHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 283 EEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 283 ~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
++.. .-+++|+|.++|+...+++++.+.+|++...+..++++..|
T Consensus 176 ~e~~-------IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 176 DEIN-------IPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred HhcC-------CCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 7753 37899999999999999999999999999999888888776
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.8e-21 Score=182.19 Aligned_cols=202 Identities=14% Similarity=0.145 Sum_probs=138.3
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--ccccCCeeEEecChHHHHHHHhhhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVMEKAIKDGKF 199 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~~i~yvfq~~~lf~~~~~~~~~ 199 (399)
+....+....+|++++|+||||||||||+++|+|++++..| .+........ ......++|++|++.+|+.. ++
T Consensus 17 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~----tv 91 (239)
T cd03296 17 ALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSG-TILFGGEDATDVPVQERNVGFVFQHYALFRHM----TV 91 (239)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECCcCCccccceEEEecCCcccCCC----CH
Confidence 33334455569999999999999999999999999999888 5543221110 11124589999997766544 67
Q ss_pred HHHHHHhccccCC----cHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 200 LEFASVHGNLYGT----SVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 200 ~E~~~~~~~~~g~----~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
.+++.+....++. ... .+.+.++. +.....+-.+..+....+++...+.+++.+|++++||||++++|+.+
T Consensus 92 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~ 171 (239)
T cd03296 92 FDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWLADRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKV 171 (239)
T ss_pred HHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHH
Confidence 7777654322221 111 12222222 11111111122223334566677789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
++.+.+.|.++.++. ..++++++|+++++...+++++.+.+|.++..+++.++...+.
T Consensus 172 ~~~l~~~l~~~~~~~-------~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 229 (239)
T cd03296 172 RKELRRWLRRLHDEL-------HVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHPA 229 (239)
T ss_pred HHHHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcCCC
Confidence 999999998875431 2388999999999999999999999999888777666655443
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-21 Score=183.68 Aligned_cols=199 Identities=16% Similarity=0.097 Sum_probs=136.8
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------ccccCCeeEEecChHHHHHH
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERSVMEKA 193 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~~i~yvfq~~~lf~~~ 193 (399)
.+..+.+....+|++++|+||||||||||+++|+|++++..| .+........ ......++|+||++.+|+.+
T Consensus 19 ~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (233)
T cd03258 19 TALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSG-SVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSR 97 (233)
T ss_pred eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEcccCCHHHHHHHHhheEEEccCcccCCCC
Confidence 344444455679999999999999999999999999999888 5543221111 01134689999998777654
Q ss_pred HhhhhhHHHHHHhccccCCcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCC
Q 015825 194 IKDGKFLEFASVHGNLYGTSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGT 268 (399)
Q Consensus 194 ~~~~~~~E~~~~~~~~~g~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~ 268 (399)
++.+++.+....++.... .+.+.++. +.....+..+..+....+++...+.+++.+|++++||||++++|+
T Consensus 98 ----t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~ 173 (233)
T cd03258 98 ----TVFENVALPLEIAGVPKAEIEERVLELLELVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDP 173 (233)
T ss_pred ----cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCcCCH
Confidence 677776654322332222 22222222 111111222222233345666677799999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 269 ETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 269 ~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
.++..+.+.+.++.++. ..++++++|+++++...+++++.+.+|+++..+++.++.
T Consensus 174 ~~~~~l~~~l~~~~~~~-------~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 174 ETTQSILALLRDINREL-------GLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred HHHHHHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999865431 238899999999998889999999999888776655443
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.1e-21 Score=180.49 Aligned_cols=198 Identities=15% Similarity=0.125 Sum_probs=135.5
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-----ccccCCeeEEecChHHHHHHHhhh
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-----AMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-----~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
..+.+....+|++++|+||||||||||+++|+|++++..| .+........ .....+++|+||++.+|+.+
T Consensus 16 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~~---- 90 (236)
T cd03219 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSG-SVLFDGEDITGLPPHEIARLGIGRTFQIPRLFPEL---- 90 (236)
T ss_pred ecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCc-eEEECCEECCCCCHHHHHhcCEEEEecccccccCC----
Confidence 3334455669999999999999999999999999999888 5543221111 11124589999998777655
Q ss_pred hhHHHHHHhccccCC----------cHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHH
Q 015825 198 KFLEFASVHGNLYGT----------SVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEER 262 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~----------~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEp 262 (399)
++.+++.+....++. ... .+.+.++. +....++-.+..+....+++...+.+++.+|++++||||
T Consensus 91 tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 170 (236)
T cd03219 91 TVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEP 170 (236)
T ss_pred CHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccchhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 677776654322211 111 12222222 111111212222223345666677799999999999999
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 263 LRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 263 l~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
++++|+.++..+.+.++++.++ ..++|+++|+++++...+++++.+.+|.+...+++.++...
T Consensus 171 t~~LD~~~~~~l~~~l~~~~~~--------~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 233 (236)
T cd03219 171 AAGLNPEETEELAELIRELRER--------GITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233 (236)
T ss_pred cccCCHHHHHHHHHHHHHHHHC--------CCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhccC
Confidence 9999999999999999876431 23889999999999999999999999988877766555443
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-21 Score=179.07 Aligned_cols=193 Identities=18% Similarity=0.156 Sum_probs=133.0
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc---cccccCCeeEEecChHHHHHHHhhhhh
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEKAIKDGKF 199 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~~i~yvfq~~~lf~~~~~~~~~ 199 (399)
....+....+|++++|+||||||||||+++|+|+++|..| .+....... .......++|+||++.+++.+ ++
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~----tv 90 (220)
T cd03265 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSG-RATVAGHDVVREPREVRRRIGIVFQDLSVDDEL----TG 90 (220)
T ss_pred eeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEecCcChHHHhhcEEEecCCccccccC----cH
Confidence 3334445568999999999999999999999999999888 554322111 111124589999998766654 66
Q ss_pred HHHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHH
Q 015825 200 LEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQI 274 (399)
Q Consensus 200 ~E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i 274 (399)
.+++.+....++..... +.+.++. +.....+-.+..+....+++...+.+++.+|++++||||++++|+.+.+.+
T Consensus 91 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~llllDEPt~~LD~~~~~~l 170 (220)
T cd03265 91 WENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHV 170 (220)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHH
Confidence 77766543333433222 2222222 111111112222233345666777899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCC
Q 015825 275 LKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTS 327 (399)
Q Consensus 275 ~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~ 327 (399)
.+.|.++..+. ..++++++|+++++...+++++.+.+|.++..+++
T Consensus 171 ~~~l~~~~~~~-------~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~ 216 (220)
T cd03265 171 WEYIEKLKEEF-------GMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTP 216 (220)
T ss_pred HHHHHHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCCh
Confidence 99998865431 23789999999999999999999999988766544
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-21 Score=192.04 Aligned_cols=195 Identities=15% Similarity=0.132 Sum_probs=143.1
Q ss_pred EEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--ccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccCCcHH
Q 015825 138 ITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSVE 215 (399)
Q Consensus 138 l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g~~~~ 215 (399)
|+||||||||||+++|+|++++..| .+....+... ......++|+||++.+|+.+ ++.+++.+....++....
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G-~I~i~g~~i~~~~~~~~~i~~v~q~~~l~~~~----tv~enl~~~~~~~~~~~~ 75 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSG-SIMLDGEDVTNVPPHLRHINMVFQSYALFPHM----TVEENVAFGLKMRKVPRA 75 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCce-EEEECCEECCCCCHHHCCEEEEecCccccCCC----cHHHHHHHHHhhcCCCHH
Confidence 5899999999999999999999888 5554322111 11234689999998888776 788888775443343332
Q ss_pred H----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccC
Q 015825 216 A----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKS 290 (399)
Q Consensus 216 ~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~ 290 (399)
. +.+.++. +....++-.+..+....+++...+.+++.+|++++||||++++|+.+++.+.+.|+++.++.
T Consensus 76 ~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~~----- 150 (325)
T TIGR01187 76 EIKPRVLEALRLVQLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQL----- 150 (325)
T ss_pred HHHHHHHHHHHHcCCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhc-----
Confidence 2 2222222 22222222233333345667777789999999999999999999999999999999876542
Q ss_pred CCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccC
Q 015825 291 SGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVAN 344 (399)
Q Consensus 291 ~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~ 344 (399)
..++++++|+++++...+++++.+.+|++.+.+++.+++..|....++.+.+
T Consensus 151 --g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~~~~~~~~~~~~ 202 (325)
T TIGR01187 151 --GITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEEPANLFVARFIG 202 (325)
T ss_pred --CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHHHHHhcC
Confidence 2389999999999999999999999999999999888888887766666544
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.6e-21 Score=189.90 Aligned_cols=206 Identities=14% Similarity=0.087 Sum_probs=143.6
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------ccccCCeeEEecCh--HHHHHH
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTER--SVMEKA 193 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~~i~yvfq~~--~lf~~~ 193 (399)
..+.++...+|++++|+|+||||||||+++|+|++++..| .+........ ......++|+||++ .+++.+
T Consensus 37 l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G-~I~~~G~~i~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~ 115 (331)
T PRK15079 37 VDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDG-EVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRM 115 (331)
T ss_pred EeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCc-EEEECCEECCcCCHHHHHHHhCceEEEecCchhhcCCCC
Confidence 3344456679999999999999999999999999999888 5544222110 01134699999996 345544
Q ss_pred HhhhhhHHHHHHhcccc--CCcHHHHHHH----HHc-CC-ceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHh
Q 015825 194 IKDGKFLEFASVHGNLY--GTSVEAVEAV----ADA-GK-RCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRA 265 (399)
Q Consensus 194 ~~~~~~~E~~~~~~~~~--g~~~~~i~~~----~~~-g~-~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~ 265 (399)
++.+++.+....+ +.+.....+. ++. ++ ..+++-.+..+....+|+...+.+++.+|+++++|||+++
T Consensus 116 ----tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~ 191 (331)
T PRK15079 116 ----TIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSA 191 (331)
T ss_pred ----CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 6666665432222 2333333222 222 11 0111212222233345666777799999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 266 RGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 266 lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
+|..++.++.+.|+++.++. ..++++++||++.+...+++++.+..|.++..+++.+++..|......
T Consensus 192 LD~~~~~~i~~lL~~l~~~~-------~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 192 LDVSIQAQVVNLLQQLQREM-------GLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred CCHHHHHHHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCCCHHHH
Confidence 99999999999999876542 238999999999999999999999999999988888888777654433
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=99.82 E-value=3.7e-21 Score=187.84 Aligned_cols=197 Identities=16% Similarity=0.116 Sum_probs=138.5
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc---cccccCCeeEEecChHHHHHHHhhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
+..+.++...+|++++|+||||||||||+++|+|+++|..| .+....... .......++|+||++.+++.+ +
T Consensus 19 ~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~----t 93 (303)
T TIGR01288 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRG-KITVLGEPVPSRARLARVAIGVVPQFDNLDPEF----T 93 (303)
T ss_pred EEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECcccHHHHhhcEEEEeccccCCcCC----c
Confidence 33334455679999999999999999999999999999888 554322111 111234689999998776655 7
Q ss_pred hHHHHHHhccccCCcHHHHH----HHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 199 FLEFASVHGNLYGTSVEAVE----AVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~i~----~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
+.+++.+....++....... +.++. +.....+..+..+....+++...+.+++.+|++++||||++++|+.+++.
T Consensus 94 v~e~l~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~ 173 (303)
T TIGR01288 94 VRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHL 173 (303)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence 77777654444444332222 22221 11111111122223334566777789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
+.+.++++.++ ..++++++|+++++...+++++.+.+|.++..+++.++.
T Consensus 174 l~~~l~~~~~~--------g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 223 (303)
T TIGR01288 174 IWERLRSLLAR--------GKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALI 223 (303)
T ss_pred HHHHHHHHHhC--------CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999886431 238899999999999999999999999988877766554
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.3e-21 Score=178.77 Aligned_cols=198 Identities=14% Similarity=0.101 Sum_probs=135.8
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC-----ccccccCCeeEEecChHHHHHHHhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA-----PRAMEKDGVHYHFTERSVMEKAIKD 196 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~-----~~~~~~~~i~yvfq~~~lf~~~~~~ 196 (399)
+..+.+....+|++++|+||||||||||+++|+|+.++..| .+...... ........++|+||++.+|+.+
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~--- 90 (232)
T cd03218 15 VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSG-KILLDGQDITKLPMHKRARLGIGYLPQEASIFRKL--- 90 (232)
T ss_pred eeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEecccCCHhHHHhccEEEecCCccccccC---
Confidence 33334455669999999999999999999999999999888 55432211 1111124589999998777655
Q ss_pred hhhHHHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 197 GKFLEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 197 ~~~~E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
++.+++.+....++..... +.+.++. +.....+-.+..+....+++...+.+++.+|++++||||++++|+.++
T Consensus 91 -tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 169 (232)
T cd03218 91 -TVEENILAVLEIRGLSKKEREEKLEELLEEFHITHLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAV 169 (232)
T ss_pred -cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHH
Confidence 6777776543333332222 2222222 111111112222233345666777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+.+.+.++++.++ ..++++++|+++++...+++++.+.+|.+...+++.++..
T Consensus 170 ~~~~~~l~~~~~~--------~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 170 QDIQKIIKILKDR--------GIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HHHHHHHHHHHHC--------CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999876431 2378899999999999999999999998887666554443
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.5e-21 Score=188.78 Aligned_cols=198 Identities=14% Similarity=0.109 Sum_probs=142.4
Q ss_pred eEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc---cccccCCeeEEecChHHHHHHHhh
Q 015825 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEKAIKD 196 (399)
Q Consensus 120 ~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~~i~yvfq~~~lf~~~~~~ 196 (399)
..+..+.++...+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||++.+|+.+
T Consensus 15 ~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G-~i~i~g~~~~~~~~~~~~~ig~~~q~~~l~~~~--- 90 (301)
T TIGR03522 15 QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSG-SVQVCGEDVLQNPKEVQRNIGYLPEHNPLYLDM--- 90 (301)
T ss_pred EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEcccChHHHHhceEEecCCCCCCCCC---
Confidence 3344444455679999999999999999999999999999999 554322111 111234689999998777765
Q ss_pred hhhHHHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 197 GKFLEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 197 ~~~~E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
++.|++.+....++.+... +.+.++. +.....+-.+..+....++++..+.+++.+|++++||||++++|+.++
T Consensus 91 -tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lliLDEPt~gLD~~~~ 169 (301)
T TIGR03522 91 -YVREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQL 169 (301)
T ss_pred -cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHH
Confidence 7888887766666655332 2223322 221111111222223345667777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
+.+++.++++.+ ..++++++|+++++...+++++.+.+|.+...+++.++.
T Consensus 170 ~~l~~~l~~~~~---------~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 220 (301)
T TIGR03522 170 VEIRNVIKNIGK---------DKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELS 220 (301)
T ss_pred HHHHHHHHHhcC---------CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999998887532 138899999999999999999999999999888766554
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-20 Score=175.23 Aligned_cols=190 Identities=15% Similarity=0.161 Sum_probs=129.8
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--ccccCCeeEEecChHHHHHHHhhhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVMEKAIKDGKF 199 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~~i~yvfq~~~lf~~~~~~~~~ 199 (399)
+..+.++...+|++++|+||||||||||+++|+|+++|..| .+........ ......++|+||++.+++.+ ++
T Consensus 15 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~----tv 89 (213)
T cd03259 15 ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSG-EILIDGRDVTGVPPERRNIGMVFQDYALFPHL----TV 89 (213)
T ss_pred eecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCEEcCcCchhhccEEEEcCchhhccCC----cH
Confidence 33334455679999999999999999999999999999888 5543221110 11124589999998766554 67
Q ss_pred HHHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHH
Q 015825 200 LEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQI 274 (399)
Q Consensus 200 ~E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i 274 (399)
.+++.+....++..... +.+.++. +.....+-.+..+....+++...+.+++.+|++++||||++++|+.++..+
T Consensus 90 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~lllDEPt~~LD~~~~~~l 169 (213)
T cd03259 90 AENIAFGLKLRGVPKAEIRARVRELLELVGLEGLLNRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREEL 169 (213)
T ss_pred HHHHHhHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 77766543323322222 2222222 111111111222233345667777799999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 275 LKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 275 ~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
.+.+.++.++. ..++++++|+++++...+++++.+.+|.+..
T Consensus 170 ~~~l~~~~~~~-------~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~ 211 (213)
T cd03259 170 REELKELQREL-------GITTIYVTHDQEEALALADRIAVMNEGRIVQ 211 (213)
T ss_pred HHHHHHHHHHc-------CCEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 99998865421 2378999999999999999999998887654
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.9e-21 Score=186.28 Aligned_cols=197 Identities=15% Similarity=0.100 Sum_probs=139.4
Q ss_pred ccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc------ccccCCeeEEecChHH-HHHHHhhh
Q 015825 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR------AMEKDGVHYHFTERSV-MEKAIKDG 197 (399)
Q Consensus 125 s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~------~~~~~~i~yvfq~~~l-f~~~~~~~ 197 (399)
+.++...+|++++|+||||||||||+++|+|+++|..| .+........ ......++|+||++.. +...
T Consensus 25 ~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~---- 99 (287)
T PRK13637 25 NVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG-KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEE---- 99 (287)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCcc-EEEECCEECCCcCccHHHHhhceEEEecCchhccccc----
Confidence 33445569999999999999999999999999999888 5543221111 1123468999998642 2222
Q ss_pred hhHHHHHHhccccCCcHHHHH----HHHHc-CCc--eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 198 KFLEFASVHGNLYGTSVEAVE----AVADA-GKR--CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~~~~~i~----~~~~~-g~~--~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
++.+++.+....++....... +.++. ++. -..+-.+..+....+++...+.+++.+|++++||||++++|+.+
T Consensus 100 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~P~llllDEPt~gLD~~~ 179 (287)
T PRK13637 100 TIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKG 179 (287)
T ss_pred cHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHH
Confidence 777887765444444443332 22322 221 11222222333345666777789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+..+.+.++++.++. ..++++++|+++++...+++++.+.+|.++..+++.+++..
T Consensus 180 ~~~l~~~l~~l~~~~-------g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13637 180 RDEILNKIKELHKEY-------NMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235 (287)
T ss_pred HHHHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999876432 23889999999999999999999999999888877766543
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.4e-21 Score=169.16 Aligned_cols=184 Identities=12% Similarity=0.095 Sum_probs=140.1
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeee-------cCCCccccccCCeeEEecChHHHHHHHhhhhhH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSH-------TTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFL 200 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~-------ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~ 200 (399)
+...+|+++.++|||||||||++++|.+...|..| .+.. ......+..++.+|++||++.+.+++ ++.
T Consensus 23 ~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G-~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~----tvy 97 (223)
T COG2884 23 FHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRG-KILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDR----TVY 97 (223)
T ss_pred EeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCc-eEEECCeecccccccccchhhheeeeEeeeccccccc----hHh
Confidence 44569999999999999999999999999999888 4432 22222334456799999999887776 999
Q ss_pred HHHHHhccccCCcHHHHHHHHHcCCceE-----EecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHH
Q 015825 201 EFASVHGNLYGTSVEAVEAVADAGKRCI-----LDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQIL 275 (399)
Q Consensus 201 E~~~~~~~~~g~~~~~i~~~~~~g~~~v-----ldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~ 275 (399)
||+.|.....|.+...+++.+.+.+..+ ...-|..+....+|+...+.+++..|++++.|||+.++||++..+++
T Consensus 98 eNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im 177 (223)
T COG2884 98 ENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIM 177 (223)
T ss_pred hhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHH
Confidence 9999999999999888887665432111 11112222223456667777999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeec
Q 015825 276 KRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNH 324 (399)
Q Consensus 276 ~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~ 324 (399)
+.+.++... ..|+++.|||.+-+-..-.+++.+++|+++..
T Consensus 178 ~lfeeinr~--------GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d 218 (223)
T COG2884 178 RLFEEINRL--------GTTVLMATHDLELVNRMRHRVLALEDGRLVRD 218 (223)
T ss_pred HHHHHHhhc--------CcEEEEEeccHHHHHhccCcEEEEeCCEEEec
Confidence 999887642 44888999998777666667788888877654
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.1e-21 Score=175.13 Aligned_cols=186 Identities=17% Similarity=0.147 Sum_probs=128.6
Q ss_pred ccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHH
Q 015825 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 125 s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~ 204 (399)
+.+....+|++++|+||||||||||+++|+|+.++..| .+..............++|+||++.+++.+ ++.+++.
T Consensus 18 ~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~----tv~e~l~ 92 (210)
T cd03269 18 DISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSG-EVLFDGKPLDIAARNRIGYLPEERGLYPKM----KVIDQLV 92 (210)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCCchhHHHHccEEEeccCCcCCcCC----cHHHHHH
Confidence 33445569999999999999999999999999999888 555433222112234689999998766654 6777776
Q ss_pred HhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHH
Q 015825 205 VHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLR 279 (399)
Q Consensus 205 ~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~ 279 (399)
+....++..... +.+.++. +.....+-.+..+....+++...+.+++.+|++++||||++++|+.+++.+.+.++
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~lllDEP~~~LD~~~~~~~~~~l~ 172 (210)
T cd03269 93 YLAQLKGLKKEEARRRIDEWLERLELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIR 172 (210)
T ss_pred HHHHHcCCChHHHHHHHHHHHHHcCChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHH
Confidence 544334433222 2222222 11111111111222234556667778999999999999999999999999999988
Q ss_pred HHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 280 NAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 280 ~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
++..+ ..++++++|+++++...+++++.+.+|.+..
T Consensus 173 ~~~~~--------~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~ 208 (210)
T cd03269 173 ELARA--------GKTVILSTHQMELVEELCDRVLLLNKGRAVL 208 (210)
T ss_pred HHHHC--------CCEEEEECCCHHHHHHhhhEEEEEeCCEEEe
Confidence 76421 2388999999999988899999998887654
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=99.81 E-value=9.3e-21 Score=174.81 Aligned_cols=188 Identities=11% Similarity=0.099 Sum_probs=131.5
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--ccccCCeeEEecChHHHHHHHhhhhhH
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVMEKAIKDGKFL 200 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~~i~yvfq~~~lf~~~~~~~~~~ 200 (399)
....+....+|++++|+||||||||||+++|+|+.++..| .+........ ......++|+||++.+++.+ ++.
T Consensus 16 l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~----tv~ 90 (208)
T cd03268 16 LDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSG-EITFDGKSYQKNIEALRRIGALIEAPGFYPNL----TAR 90 (208)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCce-EEEECCCcccchHHHHhhEEEecCCCccCccC----cHH
Confidence 3334445569999999999999999999999999999888 5654332211 11134589999997766655 777
Q ss_pred HHHHHhccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHH
Q 015825 201 EFASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLR 279 (399)
Q Consensus 201 E~~~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~ 279 (399)
+++.+....++.....+.+.++. +.....+-.+..+....+++...+.+++.+|++++||||++++|+.+++.+.+.+.
T Consensus 91 e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~ 170 (208)
T cd03268 91 ENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELIL 170 (208)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHcCCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHHHHHHHH
Confidence 87766543333333334433332 11111111111222234566677789999999999999999999999999999988
Q ss_pred HHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 280 NAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 280 ~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
++.++ ..++++++|+++++...+++++.+.+|.++.
T Consensus 171 ~~~~~--------~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~ 206 (208)
T cd03268 171 SLRDQ--------GITVLISSHLLSEIQKVADRIGIINKGKLIE 206 (208)
T ss_pred HHHHC--------CCEEEEEcCCHHHHHHhcCEEEEEECCEEEe
Confidence 76531 2388999999999998999999999887654
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.1e-20 Score=175.53 Aligned_cols=186 Identities=17% Similarity=0.132 Sum_probs=127.0
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--------ccccCCeeEEecChHHHHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--------AMEKDGVHYHFTERSVMEKA 193 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--------~~~~~~i~yvfq~~~lf~~~ 193 (399)
+..+.++...+|++++|+||||||||||+++|+|++++..| .+........ ......++|+||++.+|+.+
T Consensus 19 il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 97 (218)
T cd03255 19 ALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSG-EVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDL 97 (218)
T ss_pred EEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCce-eEEECCEehhhcchhHHHHHHhhcEEEEeeccccCCCC
Confidence 33334455679999999999999999999999999999888 5543221111 01124589999998776654
Q ss_pred HhhhhhHHHHHHhccccCCcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCC
Q 015825 194 IKDGKFLEFASVHGNLYGTSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGT 268 (399)
Q Consensus 194 ~~~~~~~E~~~~~~~~~g~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~ 268 (399)
++.+++.+....++.... .+.+.++. +....++-.+..+....+++...+.+++.+|++++||||++++|+
T Consensus 98 ----tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~ 173 (218)
T cd03255 98 ----TALENVELPLLLAGVPKKERRERAEELLERVGLGDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNLDS 173 (218)
T ss_pred ----cHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhcChhhcCHHHHHHHHHHHHHccCCCEEEEcCCcccCCH
Confidence 677777664333333222 22222222 111111222222333356667777899999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCe
Q 015825 269 ETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSI 320 (399)
Q Consensus 269 ~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~ 320 (399)
.+++.+.+.+.++.++. ..++++++|+++++. .+++++.+.+|.
T Consensus 174 ~~~~~l~~~l~~~~~~~-------~~tii~~sH~~~~~~-~~d~v~~l~~G~ 217 (218)
T cd03255 174 ETGKEVMELLRELNKEA-------GTTIVVVTHDPELAE-YADRIIELRDGK 217 (218)
T ss_pred HHHHHHHHHHHHHHHhc-------CCeEEEEECCHHHHh-hhcEEEEeeCCc
Confidence 99999999999865421 238899999999875 889888887764
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.9e-21 Score=176.67 Aligned_cols=185 Identities=10% Similarity=0.092 Sum_probs=127.8
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------ccccCCeeEEecChHHHHHHHh
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERSVMEKAIK 195 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~~i~yvfq~~~lf~~~~~ 195 (399)
....+....+|++++|+||||||||||+++|+|++++..| .+........ ......++|+||++.+|+.+
T Consensus 19 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-- 95 (216)
T TIGR00960 19 LDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRG-KIRFNGQDLTRLRGREIPFLRRHIGMVFQDHRLLSDR-- 95 (216)
T ss_pred EEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEehhhcChhHHHHHHHhceEEecCccccccc--
Confidence 3334455569999999999999999999999999999888 5544322110 01134689999998777655
Q ss_pred hhhhHHHHHHhccccCCcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 196 DGKFLEFASVHGNLYGTSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 196 ~~~~~E~~~~~~~~~g~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
++.+++.+....++.... .+.+.++. +.....+..+..+....+++...+.+++.+|++++||||++++|+.+
T Consensus 96 --tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~ 173 (216)
T TIGR00960 96 --TVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHALPMQLSGGEQQRVAIARAIVHKPPLLLADEPTGNLDPEL 173 (216)
T ss_pred --cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCHHH
Confidence 777777654333332222 22222322 11111222222333345666777789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCe
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSI 320 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~ 320 (399)
++.+.+.+.++.++ ..++++++|+++.+...+++++.+.+|.
T Consensus 174 ~~~l~~~l~~~~~~--------~~tii~vsH~~~~~~~~~d~i~~l~~G~ 215 (216)
T TIGR00960 174 SRDIMRLFEEFNRR--------GTTVLVATHDINLVETYRHRTLTLSRGR 215 (216)
T ss_pred HHHHHHHHHHHHHC--------CCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 99999999876431 2388999999999988889988887764
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=99.81 E-value=1e-20 Score=176.93 Aligned_cols=188 Identities=15% Similarity=0.105 Sum_probs=131.0
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhcc-----CCcccceeeecCCCc------cccccCCeeEEecChHHHHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEF-----PSMFGFSVSHTTRAP------RAMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~-----~~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf~~~~ 194 (399)
.+....+|++++|+||||||||||+++|+|+. ++..| .+....... .......++|+||++.+| .+
T Consensus 19 vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~-~~- 95 (227)
T cd03260 19 ISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEG-EVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPF-PG- 95 (227)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCe-EEEECCEEhhhcchHHHHHHhhEEEEecCchhc-cc-
Confidence 34455699999999999999999999999999 88888 554322211 111234689999998766 44
Q ss_pred hhhhhHHHHHHhccccCCcH-----HHHHHHHHc-CCceEEecc--hhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhC
Q 015825 195 KDGKFLEFASVHGNLYGTSV-----EAVEAVADA-GKRCILDID--VQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g~~~-----~~i~~~~~~-g~~~vldld--~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~l 266 (399)
++.+++.+....++... ..+.+.++. +....++-. +..+....+++...+.+++.+|++++||||++++
T Consensus 96 ---tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~L 172 (227)
T cd03260 96 ---SIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSAL 172 (227)
T ss_pred ---cHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccC
Confidence 77777765433333211 122233322 111111111 1223333456666777999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCc
Q 015825 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSP 328 (399)
Q Consensus 267 D~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~ 328 (399)
|+.+++.+.+.|+++.++ .++++++|+++++...+++++.+.+|.++..+++.
T Consensus 173 D~~~~~~l~~~l~~~~~~---------~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 225 (227)
T cd03260 173 DPISTAKIEELIAELKKE---------YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTE 225 (227)
T ss_pred CHHHHHHHHHHHHHHhhC---------cEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcc
Confidence 999999999999986532 28899999999999999999999999888766544
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.81 E-value=6.2e-21 Score=192.20 Aligned_cols=210 Identities=12% Similarity=0.043 Sum_probs=146.3
Q ss_pred hCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHH
Q 015825 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEK 192 (399)
Q Consensus 117 ~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~ 192 (399)
++...+..+.++...+|++++|+||||||||||+++|+|+++|..| .+....+... ....+.++|++|++.+++.
T Consensus 13 y~~~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG-~I~l~G~~i~~~~~~~~~~~ig~v~q~~~l~~~ 91 (402)
T PRK09536 13 FGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAG-TVLVAGDDVEALSARAASRRVASVPQDTSLSFE 91 (402)
T ss_pred ECCEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCc-EEEECCEEcCcCCHHHHhcceEEEccCCCCCCC
Confidence 3333444444455679999999999999999999999999999888 5543322211 1123458999999877655
Q ss_pred HHhhhhhHHHHHHhcccc----C-CcH---HHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHH
Q 015825 193 AIKDGKFLEFASVHGNLY----G-TSV---EAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERL 263 (399)
Q Consensus 193 ~~~~~~~~E~~~~~~~~~----g-~~~---~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl 263 (399)
+ ++.+++.+....| + ... +.+.+.++. +...+.+-....+....+|+...+.+|+.+|++++||||+
T Consensus 92 ~----tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~iLLLDEPt 167 (402)
T PRK09536 92 F----DVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPT 167 (402)
T ss_pred C----CHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCc
Confidence 5 7777776543211 1 111 223333322 2211222222223333566777778999999999999999
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhh
Q 015825 264 RARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSV 339 (399)
Q Consensus 264 ~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v 339 (399)
+++|+.++.++++.|+++.++ ..++++++|+++++.+.+++++.+.+|+++..+++++++..+....+
T Consensus 168 sgLD~~~~~~l~~lL~~l~~~--------g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~~~l~~~ 235 (402)
T PRK09536 168 ASLDINHQVRTLELVRRLVDD--------GKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTADTLRAA 235 (402)
T ss_pred ccCCHHHHHHHHHHHHHHHhc--------CCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCcHHHHHH
Confidence 999999999999999987531 23889999999999999999999999999998988877766543333
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=7.3e-21 Score=184.61 Aligned_cols=196 Identities=15% Similarity=0.108 Sum_probs=138.5
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--------cccccCCeeEEecChH--HHHHHHh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--------RAMEKDGVHYHFTERS--VMEKAIK 195 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--------~~~~~~~i~yvfq~~~--lf~~~~~ 195 (399)
.+....+|++++|+||||||||||+++|+|+.++..| .+....... .......++|+||++. +|+ .
T Consensus 26 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~-- 101 (290)
T PRK13634 26 VNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG-TVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFE-E-- 101 (290)
T ss_pred EEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-EEEECCEECccccccchHHHHHhhEEEEeeCchhhhhh-h--
Confidence 3345569999999999999999999999999999888 554432211 1112346899999863 342 3
Q ss_pred hhhhHHHHHHhccccCCcHHHHHHH----HHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 196 DGKFLEFASVHGNLYGTSVEAVEAV----ADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 196 ~~~~~E~~~~~~~~~g~~~~~i~~~----~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
++.+++.+....++.+.....+. ++. ++. .+.+-.+..+....+++...+.+++.+|++++||||++++|+.
T Consensus 102 --tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAraL~~~P~llllDEPt~~LD~~ 179 (290)
T PRK13634 102 --TVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPK 179 (290)
T ss_pred --hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence 67788776543344443333222 221 111 1122222223333456667777999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
+...+.+.|+++.++. ..++++++|+++++...+++++.+.+|+++..+++.+++..+
T Consensus 180 ~~~~l~~~L~~l~~~~-------g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 237 (290)
T PRK13634 180 GRKEMMEMFYKLHKEK-------GLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFADP 237 (290)
T ss_pred HHHHHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCH
Confidence 9999999998875432 238899999999999999999999999998888777665543
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.3e-21 Score=175.51 Aligned_cols=203 Identities=15% Similarity=0.128 Sum_probs=148.9
Q ss_pred hCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeee-----cCCCccccccCCeeEEecChHHHH
Q 015825 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSH-----TTRAPRAMEKDGVHYHFTERSVME 191 (399)
Q Consensus 117 ~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~-----ttr~~~~~~~~~i~yvfq~~~lf~ 191 (399)
||.-.+..+.+....+|++++++|+||+|||||+++|+|+.++..| .|.. |..++...-+.|++|+||....|+
T Consensus 13 YG~~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G-~I~~~G~dit~~p~~~r~r~Gi~~VPegR~iF~ 91 (237)
T COG0410 13 YGKIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSG-RIIFDGEDITGLPPHERARLGIAYVPEGRRIFP 91 (237)
T ss_pred ccceeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-eEEECCeecCCCCHHHHHhCCeEeCcccccchh
Confidence 4443344445556679999999999999999999999999999888 5543 334444555678999999999999
Q ss_pred HHHhhhhhHHHHHHhccccCCcHHHHHHHHHcCCceEEecchhhHHHH----------HcCCcceeEEEEcCCChHHHHH
Q 015825 192 KAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSV----------RASPLDAIFIFICPPSMEELEE 261 (399)
Q Consensus 192 ~~~~~~~~~E~~~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l----------~~~~~~~~~ili~~P~lllLDE 261 (399)
.+ ++.||+.......... .... .....++++.|.-.... .+|......+|+..|++++|||
T Consensus 92 ~L----TVeENL~~g~~~~~~~-~~~~----~~~e~v~~lFP~Lker~~~~aG~LSGGEQQMLAiaRALm~~PklLLLDE 162 (237)
T COG0410 92 RL----TVEENLLLGAYARRDK-EAQE----RDLEEVYELFPRLKERRNQRAGTLSGGEQQMLAIARALMSRPKLLLLDE 162 (237)
T ss_pred hC----cHHHHHhhhhhccccc-cccc----ccHHHHHHHChhHHHHhcCcccCCChHHHHHHHHHHHHhcCCCEEEecC
Confidence 99 9999988654332210 0000 00111222333221111 2333445569999999999999
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcc
Q 015825 262 RLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPAD 336 (399)
Q Consensus 262 pl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~ 336 (399)
|+.++.|.-.+++.+.+++++++. ..++++|.++...|++.+|+.+++..|+++..+++.++...|..
T Consensus 163 Ps~GLaP~iv~~I~~~i~~l~~~~-------g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~v 230 (237)
T COG0410 163 PSEGLAPKIVEEIFEAIKELRKEG-------GMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPDV 230 (237)
T ss_pred CccCcCHHHHHHHHHHHHHHHHcC-------CcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHHH
Confidence 999999988888888888877542 24889999999999999999999999999999998888877653
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-20 Score=175.38 Aligned_cols=190 Identities=14% Similarity=0.093 Sum_probs=133.4
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
.+....+|++++|+||||||||||+++|+|.+++..| .+..............++|+||++.+++.+ ++.++..+
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~~~~~~~~~~~~~~~~~q~~~~~~~~----t~~~~~~~ 93 (223)
T TIGR03740 19 ISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSG-EIIFDGHPWTRKDLHKIGSLIESPPLYENL----TARENLKV 93 (223)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEeccccccccEEEEcCCCCccccC----CHHHHHHH
Confidence 3445569999999999999999999999999999888 554322221111123589999987666544 67777665
Q ss_pred hccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 015825 206 HGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEE 284 (399)
Q Consensus 206 ~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~ 284 (399)
....++.....+.+.++. +.....+..+..+....+++...+.+++.+|++++||||++++|+.+++.+.+.|.++.++
T Consensus 94 ~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~ 173 (223)
T TIGR03740 94 HTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQ 173 (223)
T ss_pred HHHHcCCCHHHHHHHHHHcCCcHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHC
Confidence 433333333444444432 1111111112222223455667778999999999999999999999999999999886431
Q ss_pred HHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCc
Q 015825 285 IKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSP 328 (399)
Q Consensus 285 l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~ 328 (399)
..++++++|+++++...+++++.+.+|.+...+++.
T Consensus 174 --------~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 209 (223)
T TIGR03740 174 --------GITVILSSHILSEVQQLADHIGIISEGVLGYQGKIN 209 (223)
T ss_pred --------CCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChh
Confidence 237899999999999999999999999888766543
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.8e-21 Score=176.39 Aligned_cols=193 Identities=14% Similarity=0.090 Sum_probs=132.3
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc---cccccCCeeEEecChHHHHHHHhhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
+..+.+....+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||++.+++.. +
T Consensus 17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~i~~v~q~~~~~~~~----t 91 (220)
T cd03263 17 AVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSG-TAYINGYSIRTDRKAARQSLGYCPQFDALFDEL----T 91 (220)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEecccchHHHhhhEEEecCcCCccccC----C
Confidence 33334455569999999999999999999999999999888 554322111 111234589999997766554 6
Q ss_pred hHHHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 199 FLEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
+.+++.+....++.+... +.+.++. +....++-.+..+....+++...+.+++.+|++++||||++++|+.+.+.
T Consensus 92 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~~ 171 (220)
T cd03263 92 VREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRA 171 (220)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEECCCCCCCCHHHHHH
Confidence 777776654434433322 2222222 11111111111222234556667779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCc
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSP 328 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~ 328 (399)
+.+.|+++.+ ..++++++|+++.+...+++++.+.+|.++..+++.
T Consensus 172 l~~~l~~~~~---------~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 217 (220)
T cd03263 172 IWDLILEVRK---------GRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQ 217 (220)
T ss_pred HHHHHHHHhc---------CCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHH
Confidence 9998887542 138899999999998889999999999887766543
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-20 Score=173.78 Aligned_cols=183 Identities=12% Similarity=0.064 Sum_probs=127.7
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-cccccCCeeEEecChHH-HHHHHhhhhhHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-RAMEKDGVHYHFTERSV-MEKAIKDGKFLEFA 203 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-~~~~~~~i~yvfq~~~l-f~~~~~~~~~~E~~ 203 (399)
.+....+|++++|+||||||||||+++|+|+.+|..| .+....... .......++|+||++.. +..+ ++.+++
T Consensus 19 v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~~----tv~e~l 93 (205)
T cd03226 19 LSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSG-SILLNGKPIKAKERRKSIGYVMQDVDYQLFTD----SVREEL 93 (205)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEEhhhHHhhcceEEEecChhhhhhhc----cHHHHH
Confidence 3345568999999999999999999999999999999 554432221 11123458999998642 2233 677777
Q ss_pred HHhccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAK 282 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~ 282 (399)
.+....++.....+.+.++. +....++-.+..+....+++...+.+++.+|++++||||++++|+.+++.+.+.++++.
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~ 173 (205)
T cd03226 94 LLGLKELDAGNEQAETVLKDLDLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELA 173 (205)
T ss_pred hhhhhhcCccHHHHHHHHHHcCCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHH
Confidence 65433333222334444433 22222222233333345666777779999999999999999999999999999998764
Q ss_pred HHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCee
Q 015825 283 EEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIA 321 (399)
Q Consensus 283 ~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~ 321 (399)
++ ..++++++|+++++...+++++.+.+|.+
T Consensus 174 ~~--------~~tii~~sH~~~~~~~~~d~i~~l~~G~i 204 (205)
T cd03226 174 AQ--------GKAVIVITHDYEFLAKVCDRVLLLANGAI 204 (205)
T ss_pred HC--------CCEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 32 23889999999999888999988887754
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.2e-20 Score=175.66 Aligned_cols=193 Identities=15% Similarity=0.139 Sum_probs=131.2
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----cccccCCeeEEecChHHHHHHHhhh
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
....+....+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||++.+|+.+
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~---- 90 (222)
T cd03224 16 LFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSG-SIRFDGRDITGLPPHERARAGIGYVPEGRRIFPEL---- 90 (222)
T ss_pred eeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEcCCCCHHHHHhcCeEEeccccccCCCC----
Confidence 3334455679999999999999999999999999999888 554322111 111134589999998777655
Q ss_pred hhHHHHHHhccccCC--cHHHHHHHHHcC--CceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 198 KFLEFASVHGNLYGT--SVEAVEAVADAG--KRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~--~~~~i~~~~~~g--~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
++.+++.+....++. ....+...++.. ....++-.+..+....+++...+.+++.+|++++||||++++|+.+++.
T Consensus 91 t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 170 (222)
T cd03224 91 TVEENLLLGAYARRRAKRKARLERVYELFPRLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEE 170 (222)
T ss_pred cHHHHHHHHhhhcCchhHHHHHHHHHHHHHhhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEECCCcccCCHHHHHH
Confidence 677777664333321 111122222210 1001111111122223555666779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCc
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSP 328 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~ 328 (399)
+.+.|+++..+ ..++++++|+++++...+++++.+.+|.+...+++.
T Consensus 171 l~~~l~~~~~~--------~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 217 (222)
T cd03224 171 IFEAIRELRDE--------GVTILLVEQNARFALEIADRAYVLERGRVVLEGTAA 217 (222)
T ss_pred HHHHHHHHHHC--------CCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHH
Confidence 99999876431 248899999999999999999999999887665433
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-20 Score=177.46 Aligned_cols=197 Identities=17% Similarity=0.108 Sum_probs=136.0
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
.+....+|++++|+||||||||||+++|+|+.+|..| .+....... .......++|+||++.+|+ . ++.+
T Consensus 22 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~-~----tv~e 95 (241)
T PRK14250 22 ISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEG-SILIDGVDIKTIDVIDLRRKIGMVFQQPHLFE-G----TVKD 95 (241)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEEhhhcChHHhhhcEEEEecCchhch-h----hHHH
Confidence 3445568999999999999999999999999999888 554322111 1111346899999987664 2 6667
Q ss_pred HHHHhccccCCcHHHHHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHH
Q 015825 202 FASVHGNLYGTSVEAVEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLR 279 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~ 279 (399)
++.+....++.....+.+.++. +.. ...+..+..+....+++...+.+++.+|++++||||++++|+.+++.+.+.|+
T Consensus 96 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~ 175 (241)
T PRK14250 96 NIEYGPMLKGEKNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEELIV 175 (241)
T ss_pred HHhcchhhcCcHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 7654322222222233333322 110 01111111122234555666778999999999999999999999999999998
Q ss_pred HHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 280 NAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 280 ~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
++.++. ..++++++|+++++...+++++.+.+|.++..+++.+++..|.
T Consensus 176 ~~~~~~-------g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 224 (241)
T PRK14250 176 KLKNKM-------NLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQ 224 (241)
T ss_pred HHHHhC-------CCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCC
Confidence 865421 2388999999999998999999999999988888777776654
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=5.9e-21 Score=186.44 Aligned_cols=195 Identities=15% Similarity=0.080 Sum_probs=138.0
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC----------------------------ccccccC
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----------------------------PRAMEKD 178 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~----------------------------~~~~~~~ 178 (399)
+....+|++++|+||||||||||+++|+|++++..| .+...... .......
T Consensus 27 sl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (305)
T PRK13651 27 SVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG-TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRR 105 (305)
T ss_pred EEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc-EEEEeceecccccccccccccccccccccccccccchHHHHHh
Confidence 344569999999999999999999999999999888 44331100 0011234
Q ss_pred CeeEEecChH-HHHHHHhhhhhHHHHHHhccccCCcHHHHHHHHHc-----CCc-eEEecchhhHHHHHcCCcceeEEEE
Q 015825 179 GVHYHFTERS-VMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADA-----GKR-CILDIDVQGARSVRASPLDAIFIFI 251 (399)
Q Consensus 179 ~i~yvfq~~~-lf~~~~~~~~~~E~~~~~~~~~g~~~~~i~~~~~~-----g~~-~vldld~~g~~~l~~~~~~~~~ili 251 (399)
.++|+||++. .+... ++.+++.+....++.+.+...+.+.+ ++. ...+-.+..+....+++...+.+++
T Consensus 106 ~ig~v~Q~~~~~l~~~----tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqrvalA~aL~ 181 (305)
T PRK13651 106 RVGVVFQFAEYQLFEQ----TIEKDIIFGPVSMGVSKEEAKKRAAKYIELVGLDESYLQRSPFELSGGQKRRVALAGILA 181 (305)
T ss_pred ceEEEeeCcccccccc----cHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHH
Confidence 6899999853 22222 77788776544455554433322221 111 1122222223333456677778999
Q ss_pred cCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 252 CPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 252 ~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
.+|++++||||++++|+.+++.+.+.|+++.++ ..++++++||++.+...+++++.+.+|+++..+++.+++
T Consensus 182 ~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~--------g~tiiivtHd~~~~~~~adrv~vl~~G~i~~~g~~~~~~ 253 (305)
T PRK13651 182 MEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQ--------GKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDTYDIL 253 (305)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--------CCEEEEEeeCHHHHHHhCCEEEEEECCEEEEECCHHHHh
Confidence 999999999999999999999999999886531 348899999999999999999999999999888877766
Q ss_pred CCC
Q 015825 332 DLP 334 (399)
Q Consensus 332 ~~p 334 (399)
..+
T Consensus 254 ~~~ 256 (305)
T PRK13651 254 SDN 256 (305)
T ss_pred cCH
Confidence 543
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.1e-20 Score=176.55 Aligned_cols=197 Identities=13% Similarity=0.135 Sum_probs=136.0
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
.+....+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||++.+|+.+ ++.+
T Consensus 20 is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~----tv~e 94 (242)
T cd03295 20 LNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSG-EIFIDGEDIREQDPVELRRKIGYVIQQIGLFPHM----TVEE 94 (242)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCeEcCcCChHHhhcceEEEccCccccCCC----cHHH
Confidence 3455569999999999999999999999999999888 554322111 111134589999998776554 7777
Q ss_pred HHHHhccccCCcHH----HHHHHHHc-CCce--EEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHH
Q 015825 202 FASVHGNLYGTSVE----AVEAVADA-GKRC--ILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQI 274 (399)
Q Consensus 202 ~~~~~~~~~g~~~~----~i~~~~~~-g~~~--vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i 274 (399)
++.+....++.... .+.+.++. +... ..+-.+..+....+++...+.+++.+|++++||||++++|+.+++.+
T Consensus 95 ~l~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l 174 (242)
T cd03295 95 NIALVPKLLKWPKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQL 174 (242)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHH
Confidence 77654333332222 22222322 1110 11111112222345666777899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 275 LKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 275 ~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
.+.|.++..+. ..++|+++|+++++...+++++.+.+|.++..+++.++...+
T Consensus 175 ~~~L~~~~~~~-------g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 227 (242)
T cd03295 175 QEEFKRLQQEL-------GKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSP 227 (242)
T ss_pred HHHHHHHHHHc-------CCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcCC
Confidence 99999875421 238899999999999999999999999988777665554443
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-20 Score=177.55 Aligned_cols=196 Identities=16% Similarity=0.133 Sum_probs=133.1
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------ccccCCeeEEecChHHHHHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~~i~yvfq~~~lf~~~~ 194 (399)
+..+.+....+|++++|+||||||||||+++|+|++++..| .+.....+.. ......++|+||+..+|+.+
T Consensus 16 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~- 93 (241)
T cd03256 16 ALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSG-SVLIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERL- 93 (241)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCc-eEEECCEeccccCHhHHHHHHhccEEEcccCcccccC-
Confidence 33334455679999999999999999999999999999888 5543222111 11234689999997776654
Q ss_pred hhhhhHHHHHHhcc--------ccCC-c---HHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHH
Q 015825 195 KDGKFLEFASVHGN--------LYGT-S---VEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEE 261 (399)
Q Consensus 195 ~~~~~~E~~~~~~~--------~~g~-~---~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDE 261 (399)
++.+++.+... .++. . .+.+.+.++. +.....+..+..+....+++...+.+++.+|++++|||
T Consensus 94 ---tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDE 170 (241)
T cd03256 94 ---SVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADE 170 (241)
T ss_pred ---cHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 66676654321 0111 1 1122222222 11111111222223334566667779999999999999
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcc
Q 015825 262 RLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPK 329 (399)
Q Consensus 262 pl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~ 329 (399)
|++++|+.+++.+.+.|+++.++. ..++++++|+++++...+++++.+.+|.++..+++.+
T Consensus 171 Pt~~LD~~~~~~l~~~l~~~~~~~-------~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (241)
T cd03256 171 PVASLDPASSRQVMDLLKRINREE-------GITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAE 231 (241)
T ss_pred ccccCCHHHHHHHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHH
Confidence 999999999999999999865431 2388999999999998999999999998887766554
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-20 Score=173.23 Aligned_cols=187 Identities=13% Similarity=0.107 Sum_probs=127.5
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--ccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
.+....+|++++|+||||||||||+++|+|++++..| .+........ ......++|+||++.+++.. ++.+++
T Consensus 19 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~v~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~----tv~~~l 93 (213)
T cd03301 19 LNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSG-RIYIGGRDVTDLPPKDRDIAMVFQNYALYPHM----TVYDNI 93 (213)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECCcCCcccceEEEEecChhhccCC----CHHHHH
Confidence 3445569999999999999999999999999999888 5543221110 01123589999997766544 677777
Q ss_pred HHhccccCCcHHHHH----HHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHH
Q 015825 204 SVHGNLYGTSVEAVE----AVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRL 278 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~----~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L 278 (399)
.+....++....... +.++. +.....+..+..+....+++...+.+++.+|++++||||++++|+.+++.+.+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 173 (213)
T cd03301 94 AFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAEL 173 (213)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 654333333322222 22221 1111111111122223455666677899999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeec
Q 015825 279 RNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNH 324 (399)
Q Consensus 279 ~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~ 324 (399)
+++..+. ..++++++|+++++...+++++.+.+|.++..
T Consensus 174 ~~~~~~~-------~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~ 212 (213)
T cd03301 174 KRLQQRL-------GTTTIYVTHDQVEAMTMADRIAVMNDGQIQQI 212 (213)
T ss_pred HHHHHHc-------CCEEEEEeCCHHHHHHhcCeEEEEECCEEEec
Confidence 8875431 23889999999999988999999988877643
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-20 Score=175.48 Aligned_cols=191 Identities=15% Similarity=0.116 Sum_probs=130.5
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
+..+.+....+|++++|+||||||||||+++|+|+.++..| .+......... ....++|+||.+.+|+.+ ++.+
T Consensus 19 il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~----tv~e 92 (220)
T cd03293 19 ALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSG-EVLVDGEPVTG-PGPDRGYVFQQDALLPWL----TVLD 92 (220)
T ss_pred EEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECcc-ccCcEEEEecccccccCC----CHHH
Confidence 44444455679999999999999999999999999999888 55543322111 124589999987766544 6777
Q ss_pred HHHHhccccCCcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHH
Q 015825 202 FASVHGNLYGTSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILK 276 (399)
Q Consensus 202 ~~~~~~~~~g~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~ 276 (399)
++.+....++.... .+.+.++. +....++-.+..+....+++...+.+++.+|++++||||++++|+.+++.+.+
T Consensus 93 ~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~~~~ 172 (220)
T cd03293 93 NVALGLELQGVPKAEARERAEELLELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQE 172 (220)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHH
Confidence 77654333332222 22222222 11111111112222334566667779999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc--CCeeeecC
Q 015825 277 RLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD--GSIATNHQ 325 (399)
Q Consensus 277 ~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~--~~~~~~~~ 325 (399)
.++++.++. ..++++++|+++++...+++++.+. +|+++...
T Consensus 173 ~l~~~~~~~-------~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~ 216 (220)
T cd03293 173 ELLDIWRET-------GKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEV 216 (220)
T ss_pred HHHHHHHHc-------CCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEE
Confidence 998864331 2388999999999988899999888 67776543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.4e-20 Score=178.34 Aligned_cols=198 Identities=14% Similarity=0.105 Sum_probs=136.5
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCc-----ccceeeecCCCc------cccccCCeeEEecChHHHHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM-----FGFSVSHTTRAP------RAMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~-----~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf~~~~ 194 (399)
.+....+|++++|+||||||||||+++|+|+++|. .| .+....... .......++|+||++.+|+ .
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~- 96 (247)
T TIGR00972 20 INLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEG-KVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFP-M- 96 (247)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCce-EEEECCEEccccccchHHHHhheEEEecCcccCC-C-
Confidence 33455699999999999999999999999999886 78 554322111 1112346899999977665 4
Q ss_pred hhhhhHHHHHHhccccC-CcHHH----HHHHHHc-CCc----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHH
Q 015825 195 KDGKFLEFASVHGNLYG-TSVEA----VEAVADA-GKR----CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g-~~~~~----i~~~~~~-g~~----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~ 264 (399)
++.+++.+....++ ..... +...++. +.. ..++-.+..+....+++...+.+++.+|++++||||++
T Consensus 97 ---tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~ 173 (247)
T TIGR00972 97 ---SIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTS 173 (247)
T ss_pred ---CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 66777665432222 12222 2222222 221 11111112222234556667779999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchh
Q 015825 265 ARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHS 338 (399)
Q Consensus 265 ~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~ 338 (399)
++|+.++..+.+.|+++.++ .++++++|+++++...+++++.+.+|.++..+++.++...|....
T Consensus 174 ~LD~~~~~~l~~~l~~~~~~---------~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 238 (247)
T TIGR00972 174 ALDPIATGKIEELIQELKKK---------YTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTNPKEKR 238 (247)
T ss_pred cCCHHHHHHHHHHHHHHHhc---------CeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCChH
Confidence 99999999999999886431 388999999999999999999999999988887777766554433
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >KOG0609 consensus Calcium/calmodulin-dependent serine protein kinase/membrane-associated guanylate kinase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-18 Score=174.71 Aligned_cols=185 Identities=37% Similarity=0.638 Sum_probs=163.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~ 210 (399)
.+.++++|+|++|+|...|-++|....+..++..++||||+++..+.+|..|+|.+...|...+..+.|+|+.+|.+++|
T Consensus 338 ~~rrtlVLiGa~GvGr~elk~~Li~~~p~~f~~~VPhTtR~~r~~E~dG~eY~FVSk~~~e~dI~~~~~lE~GEy~~nlY 417 (542)
T KOG0609|consen 338 FRRRTLVLIGAQGVGRRELKNKLIELNPDRFGTAVPHTTRPPRSDEVDGVEYHFVSKEEMEADIRAGKFLEYGEYEGNLY 417 (542)
T ss_pred cccceEEEECCcccchHHHHHHHHhhCccccccCCCCcCCCCCCCCCCCccceeeehHHHhhhhhcCCceecCcchhccc
Confidence 57799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHH-hCC------CCcHHHHHHHHHHHHH
Q 015825 211 GTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLR-ARG------TETEDQILKRLRNAKE 283 (399)
Q Consensus 211 g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~-~lD------~~~~e~i~~~L~~~~~ 283 (399)
|++.+.++..+..|+.|++|+.|+.++.+|...+.++++|+.+|++..+.+--. ... ..+.+++++.+.+...
T Consensus 418 GTs~dsVr~v~~~gKicvLdv~Pqalk~lRt~Ef~PyVIFI~pP~~~~~r~~r~~~~~~~~~~~~~~d~~Lq~i~~eS~~ 497 (542)
T KOG0609|consen 418 GTSLDSVRNVIASGKICVLDVEPQALKVLRTAEFKPYVIFIAPPSLEELRALRKVAVMSTIVAKQFTDEDLQEIIDESAR 497 (542)
T ss_pred cchHHHHHHHHHhCCEEEEecCHHHhhhhhhhcccceEEEecCCCchhHHHHhhhccccccccccCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998855322 221 3466778777776543
Q ss_pred HHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 284 EIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 284 ~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
|+. .+.+.||.+|+|.|++.++..+..++..-
T Consensus 498 -ie~-~yghyfD~iIvN~dld~t~~eL~~~iekl 529 (542)
T KOG0609|consen 498 -IEQ-QYGHYFDLIIVNSDLDKTFRELKTAIEKL 529 (542)
T ss_pred -HHH-HhhhheeEEEEcCcHHHHHHHHHHHHHHh
Confidence 332 24679999999999999999998876543
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.6e-20 Score=166.16 Aligned_cols=220 Identities=14% Similarity=0.105 Sum_probs=154.3
Q ss_pred HHHHHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecC
Q 015825 111 REQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTE 186 (399)
Q Consensus 111 ~~l~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~ 186 (399)
+++.+.+|.+++.-..+....+|+++.|+||||||||||+.+++++.+...| .+....... .....+.++.+-|.
T Consensus 5 ~nv~K~y~~~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G-~i~i~g~~~~~~~s~~LAk~lSILkQ~ 83 (252)
T COG4604 5 ENVSKSYGTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSG-EITIDGLELTSTPSKELAKKLSILKQE 83 (252)
T ss_pred hhhhHhhCCEEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCc-eEEEeeeecccCChHHHHHHHHHHHhh
Confidence 4566889988888777777789999999999999999999999999999998 655322111 11111123333333
Q ss_pred hHHHHHHHhhhhhHHHHHHhcccc--CCcHHHHHHHHHcCC--ceEEecchhhHHH---HHcCCcceeEEEEcCCChHHH
Q 015825 187 RSVMEKAIKDGKFLEFASVHGNLY--GTSVEAVEAVADAGK--RCILDIDVQGARS---VRASPLDAIFIFICPPSMEEL 259 (399)
Q Consensus 187 ~~lf~~~~~~~~~~E~~~~~~~~~--g~~~~~i~~~~~~g~--~~vldld~~g~~~---l~~~~~~~~~ili~~P~lllL 259 (399)
.....++ ++.+.+.|+..-| |.+..+-+..+++.. ..+.++...-+.. .++|+...+.+++.+.+..+|
T Consensus 84 N~i~~rl----TV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTdyvlL 159 (252)
T COG4604 84 NHINSRL----TVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLL 159 (252)
T ss_pred chhhhee----EHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCcEEEe
Confidence 3222222 6666666654322 333232222232211 1111221111111 246667777899999999999
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhh
Q 015825 260 EERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSV 339 (399)
Q Consensus 260 DEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v 339 (399)
|||++++|....-++++.++++.+++.. |+|+|-||+..|-..+|+++.+.+|+++.+|+|.+++.....+.+
T Consensus 160 DEPLNNLDmkHsv~iMk~Lrrla~el~K-------tiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii~~~~L~ei 232 (252)
T COG4604 160 DEPLNNLDMKHSVQIMKILRRLADELGK-------TIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQPEILSEI 232 (252)
T ss_pred cCcccccchHHHHHHHHHHHHHHHHhCC-------eEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhcCHHHHHHH
Confidence 9999999999999999999999988866 899999999999999999999999999999999988877655555
Q ss_pred hcc
Q 015825 340 SKV 342 (399)
Q Consensus 340 ~~~ 342 (399)
+.+
T Consensus 233 ydm 235 (252)
T COG4604 233 YDM 235 (252)
T ss_pred hcC
Confidence 543
|
|
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-20 Score=183.29 Aligned_cols=193 Identities=13% Similarity=0.093 Sum_probs=137.7
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--------cccccCCeeEEecCh--HHHHHHHh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--------RAMEKDGVHYHFTER--SVMEKAIK 195 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--------~~~~~~~i~yvfq~~--~lf~~~~~ 195 (399)
.+....+|++++|+||||||||||+++|+|++++..| .+.....+. .......++|+||++ .+|. .
T Consensus 25 vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~-- 100 (288)
T PRK13643 25 IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG-KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFE-E-- 100 (288)
T ss_pred eEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCc-EEEECCEECccccccccHHHHHhhEEEEecCcchhccc-c--
Confidence 3345569999999999999999999999999999989 554422211 111234689999986 3332 2
Q ss_pred hhhhHHHHHHhccccCCcHHHHHHHHHc-----CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 196 DGKFLEFASVHGNLYGTSVEAVEAVADA-----GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 196 ~~~~~E~~~~~~~~~g~~~~~i~~~~~~-----g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
++.+++.+....++.+.......+.+ ++. .+.+-.+..+....+++...+.+|+.+|++++||||++++|+.
T Consensus 101 --tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~~p~illLDEPt~gLD~~ 178 (288)
T PRK13643 101 --TVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPK 178 (288)
T ss_pred --hHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHH
Confidence 67787776544445444433322222 111 1122222223333456667778999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
++..+.+.+.+++++ ..++++++|+++++...+++++.+.+|.++..+++.+++.
T Consensus 179 ~~~~l~~~l~~l~~~--------g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 233 (288)
T PRK13643 179 ARIEMMQLFESIHQS--------GQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233 (288)
T ss_pred HHHHHHHHHHHHHHC--------CCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHc
Confidence 999999999876532 2389999999999999999999999999998888776654
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.3e-20 Score=175.04 Aligned_cols=189 Identities=15% Similarity=0.119 Sum_probs=130.1
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc---cccccCCeeEEecChHHHHHHHhhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
+..+.+....+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||++.+|+.+ +
T Consensus 20 il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~----t 94 (218)
T cd03266 20 AVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAG-FATVDGFDVVKEPAEARRRLGFVSDSTGLYDRL----T 94 (218)
T ss_pred eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCc-eEEECCEEcccCHHHHHhhEEEecCCcccCcCC----C
Confidence 33334455568999999999999999999999999999888 554322111 111234689999998776655 6
Q ss_pred hHHHHHHhccccCCcHHHH----HHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 199 FLEFASVHGNLYGTSVEAV----EAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~i----~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
+.+++.+....++...... .+.++. +....++-.+..+....+++...+.+++.+|++++||||++++|+.+.+.
T Consensus 95 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~ 174 (218)
T cd03266 95 ARENLEYFAGLYGLKGDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRA 174 (218)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcCCCHHHHHH
Confidence 7777766444344333222 222222 11111111111122234566677779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
+.+.|.++.++ ..++|+++|+++++...+++++.+.+|.++.
T Consensus 175 l~~~l~~~~~~--------~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~ 216 (218)
T cd03266 175 LREFIRQLRAL--------GKCILFSTHIMQEVERLCDRVVVLHRGRVVY 216 (218)
T ss_pred HHHHHHHHHHC--------CCEEEEEeCCHHHHHHhcCEEEEEECCEEee
Confidence 99999886431 3489999999999999999999998887654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=99.79 E-value=2e-20 Score=172.99 Aligned_cols=183 Identities=16% Similarity=0.093 Sum_probs=126.4
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc---ccccCCeeEEecChHHHHHHHhhhhhHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR---AMEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~---~~~~~~i~yvfq~~~lf~~~~~~~~~~E~ 202 (399)
.+....+| +++|+||||||||||+++|+|++++..| .+........ ......++|+||++.+|+.+ ++.++
T Consensus 19 vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~----tv~~~ 92 (211)
T cd03264 19 VSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSG-TIRIDGQDVLKQPQKLRRRIGYLPQEFGVYPNF----TVREF 92 (211)
T ss_pred eeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCcc-EEEECCCccccchHHHHhheEEecCCCcccccC----CHHHH
Confidence 33445578 9999999999999999999999999888 5554322211 11134589999998777654 67777
Q ss_pred HHHhccccCCcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHH
Q 015825 203 ASVHGNLYGTSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (399)
Q Consensus 203 ~~~~~~~~g~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~ 277 (399)
+.+....++.... .+.+.++. +....++..+..+....+++...+.+++.+|++++||||++++|+.+++.+.+.
T Consensus 93 l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 172 (211)
T cd03264 93 LDYIAWLKGIPSKEVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNL 172 (211)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHH
Confidence 6654333332222 22222222 111111212222222345666777799999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 278 L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
++++.+ + .++++++|+++.+...+++++.+.+|.++.
T Consensus 173 l~~~~~--------~-~tii~vsH~~~~~~~~~d~i~~l~~g~i~~ 209 (211)
T cd03264 173 LSELGE--------D-RIVILSTHIVEDVESLCNQVAVLNKGKLVF 209 (211)
T ss_pred HHHHhC--------C-CEEEEEcCCHHHHHHhCCEEEEEECCEEEe
Confidence 987642 1 388999999999988899999998887654
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-20 Score=175.23 Aligned_cols=205 Identities=14% Similarity=0.145 Sum_probs=140.9
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--ccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
.+....+|++++|+||||||||||+++|+|.+++..| .+.....+.. ......++|+||++.+|+.. ++.+++
T Consensus 19 is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G-~i~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~----t~~enl 93 (237)
T TIGR00968 19 VNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSG-RIRLNGQDATRVHARDRKIGFVFQHYALFKHL----TVRDNI 93 (237)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEEcCcCChhhcCEEEEecChhhccCC----cHHHHH
Confidence 3345569999999999999999999999999999888 4543221111 11234689999998777644 666776
Q ss_pred HHhccccCCcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHH
Q 015825 204 SVHGNLYGTSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRL 278 (399)
Q Consensus 204 ~~~~~~~g~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L 278 (399)
.+....++.... .+.+.++. +.....+-.+..+....+++...+.+++.+|++++||||++++|..+++.+.+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l 173 (237)
T TIGR00968 94 AFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWL 173 (237)
T ss_pred HhHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 654333332222 22222222 1111111111122223455566677999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcc
Q 015825 279 RNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKV 342 (399)
Q Consensus 279 ~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~ 342 (399)
.++.++. ..++++++|+++++...+++++.+.+|.++..++..+++..+....+..+
T Consensus 174 ~~~~~~~-------~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~~~~~~~~~ 230 (237)
T TIGR00968 174 RKLHDEV-------HVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPANPFVMSF 230 (237)
T ss_pred HHHHHhc-------CCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcCCCcHHHHHh
Confidence 9865421 24899999999999999999999999999888877777776655544433
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-20 Score=176.92 Aligned_cols=201 Identities=14% Similarity=0.102 Sum_probs=136.7
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc------------cccccCCeeEEecChHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP------------RAMEKDGVHYHFTERSV 189 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~------------~~~~~~~i~yvfq~~~l 189 (399)
+..+.+....+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||++.+
T Consensus 18 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~ 96 (250)
T PRK11264 18 VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAG-TIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNL 96 (250)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe-EEEECCEEccccccccchhhHHHHhhhhEEEEecCccc
Confidence 33334455669999999999999999999999999998888 554321110 01123468999999776
Q ss_pred HHHHHhhhhhHHHHHHhcc-ccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHH
Q 015825 190 MEKAIKDGKFLEFASVHGN-LYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERL 263 (399)
Q Consensus 190 f~~~~~~~~~~E~~~~~~~-~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl 263 (399)
++.. ++.+++.+... .++..... +.+.++. +.....+-.+..+....+++...+.+++.+|++++||||+
T Consensus 97 ~~~~----tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~Gq~qrv~la~al~~~p~lllLDEPt 172 (250)
T PRK11264 97 FPHR----TVLENIIEGPVIVKGEPKEEATARARELLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPT 172 (250)
T ss_pred CCCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhCChhhCChHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 6544 67777654321 12222222 2222222 1111111122222233456667777999999999999999
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 264 RARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 264 ~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
+++|+.+++.+.+.+.++.++ ..++++++|+++++...+++++.+.+|.++..+++.++...+.
T Consensus 173 ~~LD~~~~~~l~~~l~~~~~~--------~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 236 (250)
T PRK11264 173 SALDPELVGEVLNTIRQLAQE--------KRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADPQ 236 (250)
T ss_pred ccCCHHHHHHHHHHHHHHHhc--------CCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcCCC
Confidence 999999999999998876431 2388999999999988999999999999887777666655544
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.4e-20 Score=175.83 Aligned_cols=201 Identities=16% Similarity=0.119 Sum_probs=136.5
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc------ccccCCeeEEecChHHHHHHHh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR------AMEKDGVHYHFTERSVMEKAIK 195 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~------~~~~~~i~yvfq~~~lf~~~~~ 195 (399)
+..+.+....+|++++|+||||||||||+++|+|.+++..| .+........ ......++|+||++.+++.+
T Consensus 16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-- 92 (240)
T PRK09493 16 VLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSG-DLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHL-- 92 (240)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECCcCChhHHHHhhceEEEecccccCCCC--
Confidence 33334455569999999999999999999999999999888 5554322111 11134689999987766544
Q ss_pred hhhhHHHHHHhcc-ccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 196 DGKFLEFASVHGN-LYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 196 ~~~~~E~~~~~~~-~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
++.+++.+... .++..... +.+.++. +....++..+..+....+++...+.+++.+|++++||||++++|+.
T Consensus 93 --tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~ 170 (240)
T PRK09493 93 --TALENVMFGPLRVRGASKEEAEKQARELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPE 170 (240)
T ss_pred --cHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCChHHHhcChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 66676655321 12222222 2222222 1111111122222223455666777999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
+++.+.+.+.++.++ ..++++++|+++++...+++++.+.+|.++..+++.+....+.
T Consensus 171 ~~~~l~~~l~~~~~~--------~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 228 (240)
T PRK09493 171 LRHEVLKVMQDLAEE--------GMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNPP 228 (240)
T ss_pred HHHHHHHHHHHHHHc--------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcCCc
Confidence 999999999886432 2388999999999988899999999999887776665555443
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.2e-20 Score=176.31 Aligned_cols=201 Identities=14% Similarity=0.130 Sum_probs=137.3
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-----------------ccccCCeeEEecChH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-----------------AMEKDGVHYHFTERS 188 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-----------------~~~~~~i~yvfq~~~ 188 (399)
.+....+|++++|+||||||||||+++|+|++++..| .+........ ......++|+||++.
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~ 97 (252)
T TIGR03005 19 LNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEG-QIQVEGEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFN 97 (252)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEccccccccccccccchhHHHHHhhCeEEEecCcc
Confidence 3445569999999999999999999999999999888 4543221110 011346899999987
Q ss_pred HHHHHHhhhhhHHHHHHhcc-ccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHH
Q 015825 189 VMEKAIKDGKFLEFASVHGN-LYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEER 262 (399)
Q Consensus 189 lf~~~~~~~~~~E~~~~~~~-~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEp 262 (399)
+|+.. ++.+++.+... .++..... +.+.++. +....++-.+..+....+++...+.+++.+|++++||||
T Consensus 98 ~~~~~----tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 173 (252)
T TIGR03005 98 LFPHK----TVLDNVTEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEV 173 (252)
T ss_pred cCCCC----cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhhcChhhcCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 66554 66777655321 11222222 2222222 111111111222222345566677799999999999999
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchh
Q 015825 263 LRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHS 338 (399)
Q Consensus 263 l~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~ 338 (399)
++++|+.++..+.+.|+++.++. ..++++++|+++++...+++++.+.+|+++..+++.++...|....
T Consensus 174 ~~~LD~~~~~~l~~~l~~~~~~~-------~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 242 (252)
T TIGR03005 174 TSALDPELVGEVLNVIRRLASEH-------DLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQPKEER 242 (252)
T ss_pred cccCCHHHHHHHHHHHHHHHHhc-------CcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcCCCcHH
Confidence 99999999999999998865431 2388999999999989999999999999988777776666654333
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-20 Score=181.59 Aligned_cols=194 Identities=12% Similarity=0.112 Sum_probs=135.3
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--------cccccCCeeEEecChH--HHHHHHhh
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--------RAMEKDGVHYHFTERS--VMEKAIKD 196 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--------~~~~~~~i~yvfq~~~--lf~~~~~~ 196 (399)
+....+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||++. +|+ .
T Consensus 27 sl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~~~~ig~v~q~~~~~l~~-~--- 101 (286)
T PRK13646 27 NTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTG-TVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFE-D--- 101 (286)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEECccccccchHHHHHhheEEEecChHhccch-h---
Confidence 344568999999999999999999999999999888 554322111 0112346899999863 343 2
Q ss_pred hhhHHHHHHhccccCCcHHHHHH----HHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 197 GKFLEFASVHGNLYGTSVEAVEA----VADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 197 ~~~~E~~~~~~~~~g~~~~~i~~----~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
++.+++.+.....+.......+ .++. ++. ...+-.+..+....+++...+.+++.+|++++||||++++|+.+
T Consensus 102 -tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~~~p~illlDEPt~~LD~~~ 180 (286)
T PRK13646 102 -TVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQS 180 (286)
T ss_pred -hHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHH
Confidence 6677776643333333333322 2221 111 11111122223334566677779999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+..+.+.++++..+. ..++++++|+++++...+++++.+.+|.++..+++.+++..
T Consensus 181 ~~~l~~~l~~l~~~~-------g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 236 (286)
T PRK13646 181 KRQVMRLLKSLQTDE-------NKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD 236 (286)
T ss_pred HHHHHHHHHHHHHhC-------CCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999875431 34899999999999999999999999999888877665543
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-20 Score=175.10 Aligned_cols=197 Identities=14% Similarity=0.098 Sum_probs=134.0
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----cccccCCeeEEecChHHHHHHHhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSVMEKAIKD 196 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~lf~~~~~~ 196 (399)
+....+....+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||++.+|+.+
T Consensus 15 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~--- 90 (230)
T TIGR03410 15 ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSG-SIRLDGEDITKLPPHERARAGIAYVPQGREIFPRL--- 90 (230)
T ss_pred EecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-EEEECCEECCCCCHHHHHHhCeEEeccCCcccCCC---
Confidence 33334455669999999999999999999999999999888 555432111 111134689999998777654
Q ss_pred hhhHHHHHHhccccCCcHH-HHHHHHHcC--CceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 197 GKFLEFASVHGNLYGTSVE-AVEAVADAG--KRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 197 ~~~~E~~~~~~~~~g~~~~-~i~~~~~~g--~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
++.+++.+....++.... ...+.++.. .....+-.+..+....+++...+.+++.+|++++||||++++|+.+++.
T Consensus 91 -tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDEPt~~LD~~~~~~ 169 (230)
T TIGR03410 91 -TVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKD 169 (230)
T ss_pred -cHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHH
Confidence 667776654333322211 112222110 0011111122222234556667779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccc
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKG 330 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~ 330 (399)
+.+.|.++.++. ..++++++|+++++...+++++.+.+|.++..+++.++
T Consensus 170 l~~~l~~~~~~~-------~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 170 IGRVIRRLRAEG-------GMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HHHHHHHHHHcC-------CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 999998865421 34889999999999988999999999988877765543
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.8e-20 Score=178.79 Aligned_cols=205 Identities=13% Similarity=0.073 Sum_probs=140.3
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-----cccceeeecCCCc------cccccCCeeEEecChHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAP------RAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-----~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf 190 (399)
+....+....+|++++|+||||||||||+++|+|+.++ ..| .+....... .......++|+||++.+|
T Consensus 27 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 105 (258)
T PRK14268 27 ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEG-KVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPF 105 (258)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcce-EEEECCEEcccccchHHHHhhhEEEEecCCccC
Confidence 33334455679999999999999999999999999874 577 454322111 111234689999997766
Q ss_pred HHHHhhhhhHHHHHHhccccCCcHHH----HHHHHHcC-Cc----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHH
Q 015825 191 EKAIKDGKFLEFASVHGNLYGTSVEA----VEAVADAG-KR----CILDIDVQGARSVRASPLDAIFIFICPPSMEELEE 261 (399)
Q Consensus 191 ~~~~~~~~~~E~~~~~~~~~g~~~~~----i~~~~~~g-~~----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDE 261 (399)
+ . ++.+++.+....++..... +.+.++.. .. ..++-.+..+....++++..+.+++.+|++++|||
T Consensus 106 ~-~----tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDE 180 (258)
T PRK14268 106 P-M----SIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDE 180 (258)
T ss_pred c-c----cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeC
Confidence 5 4 6777776543333333222 22223221 10 00111111222234566677779999999999999
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhc
Q 015825 262 RLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSK 341 (399)
Q Consensus 262 pl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~ 341 (399)
|++++|+.++..+.+.|+++.+ ..++|+++|+++++...+++++.+.+|++...+++.+++..|....+..
T Consensus 181 Pt~~LD~~~~~~l~~~l~~l~~---------~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 251 (258)
T PRK14268 181 PTSALDPISTARIEDLIMNLKK---------DYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHNPREKSTED 251 (258)
T ss_pred CCcccCHHHHHHHHHHHHHHhh---------CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCCCCHHHHH
Confidence 9999999999999999987632 1388999999999999999999999999988888887777766555443
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-20 Score=176.26 Aligned_cols=195 Identities=15% Similarity=0.120 Sum_probs=132.5
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------ccccCCeeEEecChHHHHHHHh
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERSVMEKAIK 195 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~~i~yvfq~~~lf~~~~~ 195 (399)
....+....+|++++|+||||||||||+++|+|++++..| .+........ ......++|+||++.+|+.+
T Consensus 18 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-- 94 (243)
T TIGR02315 18 LKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSG-SILLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERL-- 94 (243)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCcc-EEEECCEEhhhCCHHHHHHHHhheEEEcCCCcccccc--
Confidence 3334455679999999999999999999999999999888 5543221110 11134589999998777654
Q ss_pred hhhhHHHHHHhccc--------cCC-cH---HHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHH
Q 015825 196 DGKFLEFASVHGNL--------YGT-SV---EAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEER 262 (399)
Q Consensus 196 ~~~~~E~~~~~~~~--------~g~-~~---~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEp 262 (399)
++.+++.+.... .+. .. +.+.+.++. +....++-.+..+....+++...+.+++.+|++++||||
T Consensus 95 --tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEP 172 (243)
T TIGR02315 95 --TVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEP 172 (243)
T ss_pred --cHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 667776542111 111 11 122222222 111111111222222345566677799999999999999
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcc
Q 015825 263 LRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPK 329 (399)
Q Consensus 263 l~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~ 329 (399)
++++|+.+++.+.+.|+++.++. ..++++++|+++.+...+++++.+.+|.++..+++.+
T Consensus 173 t~~LD~~~~~~l~~~l~~~~~~~-------~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 232 (243)
T TIGR02315 173 IASLDPKTSKQVMDYLKRINKED-------GITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSE 232 (243)
T ss_pred cccCCHHHHHHHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHH
Confidence 99999999999999998865431 2388999999999988999999999998887776554
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.2e-20 Score=177.35 Aligned_cols=202 Identities=12% Similarity=0.094 Sum_probs=137.8
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------ccccCCeeEEecChHHHHHH
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERSVMEKA 193 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~~i~yvfq~~~lf~~~ 193 (399)
.+..+.++...+|++++|+||||||||||+++|+|+++|..| .+........ ......++|+||+..+|+.+
T Consensus 21 ~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 99 (269)
T PRK11831 21 CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHG-EILFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDM 99 (269)
T ss_pred EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEccccChhhHHHHhhcEEEEecccccCCCC
Confidence 334444455679999999999999999999999999999888 5544321110 01134589999997766544
Q ss_pred HhhhhhHHHHHHhcccc-CCcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCC
Q 015825 194 IKDGKFLEFASVHGNLY-GTSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARG 267 (399)
Q Consensus 194 ~~~~~~~E~~~~~~~~~-g~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD 267 (399)
++.+++.+....+ ..... .+...++. +.....+..+..+....+++...+.+++.+|++++||||++++|
T Consensus 100 ----tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD 175 (269)
T PRK11831 100 ----NVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQD 175 (269)
T ss_pred ----CHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCC
Confidence 6677765532111 11221 12222222 11111111222223334566667779999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 268 TETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 268 ~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
+.+++.+.+.++++.++. ..++++++|+++++...+++++.+.+|.++..+++.++...+
T Consensus 176 ~~~~~~l~~~l~~~~~~~-------g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 235 (269)
T PRK11831 176 PITMGVLVKLISELNSAL-------GVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANP 235 (269)
T ss_pred HHHHHHHHHHHHHHHHhc-------CcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcCC
Confidence 999999999998865431 238899999999999999999999999998888777666544
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.2e-20 Score=172.76 Aligned_cols=188 Identities=14% Similarity=0.122 Sum_probs=125.8
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-----c---cccCCeeEEecChHHHHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-----A---MEKDGVHYHFTERSVMEKA 193 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-----~---~~~~~i~yvfq~~~lf~~~ 193 (399)
+....+....+|++++|+||||||||||+++|+|.+++..| .+........ . .....++|+||++.+|+.+
T Consensus 20 ~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 98 (221)
T TIGR02211 20 VLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSG-EVLFNGQSLSKLSSNERAKLRNKKLGFIYQFHHLLPDF 98 (221)
T ss_pred eEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEEhhhcCHhHHHHHHHhcEEEEecccccCCCC
Confidence 33334455679999999999999999999999999999888 5544322111 0 0114589999997666544
Q ss_pred HhhhhhHHHHHHhccccCCcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCC
Q 015825 194 IKDGKFLEFASVHGNLYGTSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGT 268 (399)
Q Consensus 194 ~~~~~~~E~~~~~~~~~g~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~ 268 (399)
++.+++.+....+..... .+.+.++. +....++..+..+....+++...+.+++.+|++++||||++++|+
T Consensus 99 ----tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~ 174 (221)
T TIGR02211 99 ----TALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDN 174 (221)
T ss_pred ----cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCCCcCCH
Confidence 677776653222222221 22222222 111111222222333345667777899999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeee
Q 015825 269 ETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIAT 322 (399)
Q Consensus 269 ~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~ 322 (399)
.+++.+.+.|.++.++. ..++++++|+++.+. .+++++.+.+|.++
T Consensus 175 ~~~~~l~~~l~~~~~~~-------~~tii~~tH~~~~~~-~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 175 NNAKIIFDLMLELNREL-------NTSFLVVTHDLELAK-KLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHHHHHHHHHhc-------CCEEEEEeCCHHHHh-hcCEEEEEeCCEec
Confidence 99999999998865431 238899999998874 47888888877553
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.9e-20 Score=171.32 Aligned_cols=181 Identities=15% Similarity=0.154 Sum_probs=124.7
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------ccccCCeeEEecChHHHHHHHhhhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
.+....+|++++|+||||||||||+++|+|++++..| .+........ ......++|+||++.+|+.+ +
T Consensus 21 is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~----t 95 (214)
T TIGR02673 21 VSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRG-QVRIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDR----T 95 (214)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEcccCCHHHHHHHHhheEEEecChhhccCC----c
Confidence 3345569999999999999999999999999999888 5543222111 01234689999998777654 6
Q ss_pred hHHHHHHhccccCCcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 199 FLEFASVHGNLYGTSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
+.+++.+....++.... .+.+.++. +....++..+..+....+++...+.+++.+|++++||||++++|+.++..
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~ 175 (214)
T TIGR02673 96 VYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSER 175 (214)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHH
Confidence 77776654322332222 22222222 11111111222223334566677779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
+.+.++++.++ ..++++++|+++++...+++++.+.+|
T Consensus 176 l~~~l~~~~~~--------~~tii~~tH~~~~~~~~~d~i~~l~~G 213 (214)
T TIGR02673 176 ILDLLKRLNKR--------GTTVIVATHDLSLVDRVAHRVIILDDG 213 (214)
T ss_pred HHHHHHHHHHc--------CCEEEEEeCCHHHHHHhcCEEEEecCC
Confidence 99999986432 238899999999999889998887765
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.8e-20 Score=179.09 Aligned_cols=190 Identities=13% Similarity=0.085 Sum_probs=133.1
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChH-HHHHHHhhhhhH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERS-VMEKAIKDGKFL 200 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~-lf~~~~~~~~~~ 200 (399)
.+....+|++++|+||||||||||+++|+|+++|..| .+....... .......++|+||++. .+... ++.
T Consensus 24 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~----tv~ 98 (274)
T PRK13647 24 LSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRG-RVKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSS----TVW 98 (274)
T ss_pred EEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCce-EEEECCEECCCCCHHHHHhhEEEEecChhhhhccC----cHH
Confidence 3344569999999999999999999999999999888 554432211 1111245899999863 23333 677
Q ss_pred HHHHHhccccCCcHHHH----HHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHH
Q 015825 201 EFASVHGNLYGTSVEAV----EAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQIL 275 (399)
Q Consensus 201 E~~~~~~~~~g~~~~~i----~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~ 275 (399)
+++.+.....+...... ...++. ++....+-.+..+....+++...+.+++.+|++++||||++++|+.++..+.
T Consensus 99 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~ 178 (274)
T PRK13647 99 DDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLM 178 (274)
T ss_pred HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHHHHH
Confidence 77765433223333222 222222 2211122222233333456667778999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCc
Q 015825 276 KRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSP 328 (399)
Q Consensus 276 ~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~ 328 (399)
+.+.++.++ ..++++++|+++++.+.+++++.+.+|.++..++++
T Consensus 179 ~~l~~~~~~--------g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 223 (274)
T PRK13647 179 EILDRLHNQ--------GKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKS 223 (274)
T ss_pred HHHHHHHHC--------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999986532 248999999999999999999999999988877654
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.2e-20 Score=180.28 Aligned_cols=195 Identities=11% Similarity=0.073 Sum_probs=135.5
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChH-HHHHHHhhhhhH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERS-VMEKAIKDGKFL 200 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~-lf~~~~~~~~~~ 200 (399)
.+....+|++++|+||||||||||+++|+|+++|..| .+....... .......++|+||++. .+... ++.
T Consensus 26 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~----tv~ 100 (279)
T PRK13650 26 VSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESG-QIIIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGA----TVE 100 (279)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEECCcCcHHHHHhhceEEEcChHHhcccc----cHH
Confidence 3445569999999999999999999999999999888 554322111 1112345899999873 44443 777
Q ss_pred HHHHHhccccCCcHHHH----HHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHH
Q 015825 201 EFASVHGNLYGTSVEAV----EAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQIL 275 (399)
Q Consensus 201 E~~~~~~~~~g~~~~~i----~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~ 275 (399)
+++.+....++...... .+.++. +..-..+..+..+....+++...+.+++.+|++++||||++++|+.++..+.
T Consensus 101 eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~ 180 (279)
T PRK13650 101 DDVAFGLENKGIPHEEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELI 180 (279)
T ss_pred HHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHH
Confidence 77766543334443322 222222 2211122222222333456666777999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 276 KRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 276 ~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+.+.++..+. ..++++++|+++++ ..+++++.+.+|++...+++.+++..
T Consensus 181 ~~l~~l~~~~-------g~tilivtH~~~~~-~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 181 KTIKGIRDDY-------QMTVISITHDLDEV-ALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHHHHHhc-------CCEEEEEecCHHHH-HhCCEEEEEECCEEEEECCHHHHHcC
Confidence 9999876432 34899999999988 57999999999998887776655543
|
|
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=3.3e-20 Score=182.81 Aligned_cols=205 Identities=13% Similarity=0.075 Sum_probs=138.5
Q ss_pred eccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------ccccCCeeEEecChH--HHHHHH
Q 015825 124 WSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERS--VMEKAI 194 (399)
Q Consensus 124 ~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~~i~yvfq~~~--lf~~~~ 194 (399)
.+.++...+|++++|+|+||||||||+++|+|++++..| .+........ ...+..++|+||++. +++.+
T Consensus 32 ~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G-~i~~~g~~l~~~~~~~~~~~r~~i~~v~Q~~~~~l~p~~- 109 (327)
T PRK11308 32 DGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGG-ELYYQGQDLLKADPEAQKLLRQKIQIVFQNPYGSLNPRK- 109 (327)
T ss_pred eeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCc-EEEECCEEcCcCCHHHHHHHhCCEEEEEcCchhhcCCcc-
Confidence 334455679999999999999999999999999999888 5543221110 111346999999963 33433
Q ss_pred hhhhhHHHHHHhcccc-CCcHHH----HHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCC
Q 015825 195 KDGKFLEFASVHGNLY-GTSVEA----VEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARG 267 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~-g~~~~~----i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD 267 (399)
++.+++......+ +..... +.+.++. ++. ..++..+..+....+|+...+.+++.+|+++++|||++++|
T Consensus 110 ---~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD 186 (327)
T PRK11308 110 ---KVGQILEEPLLINTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALD 186 (327)
T ss_pred ---CHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCC
Confidence 3333332211111 122222 2222222 110 01111122222234566667779999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 268 TETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 268 ~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
..++.++.+.|.++.++. ..++++++||+..+...+++++.+..|.++..+++.+++..|......
T Consensus 187 ~~~~~~i~~lL~~l~~~~-------g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~~~~p~hpyt~ 252 (327)
T PRK11308 187 VSVQAQVLNLMMDLQQEL-------GLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNPRHPYTQ 252 (327)
T ss_pred HHHHHHHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCCCCHHHH
Confidence 999999999999876543 338999999999999999999999999999999888888777654433
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.5e-20 Score=171.37 Aligned_cols=184 Identities=14% Similarity=0.092 Sum_probs=127.3
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--ccccCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
....+|++++|+||||||||||+++|+|+.++..| .+........ ......++|+||++.+|+.+ ++.+++.+
T Consensus 19 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G-~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~----tv~enl~~ 93 (211)
T cd03298 19 LTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSG-RVLINGVDVTAAPPADRPVSMLFQENNLFAHL----TVEQNVGL 93 (211)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEcCcCCHhHccEEEEecccccCCCC----cHHHHHhc
Confidence 44569999999999999999999999999999888 5544222111 01124689999998776654 67777765
Q ss_pred hcccc-CC---cHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHH
Q 015825 206 HGNLY-GT---SVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRN 280 (399)
Q Consensus 206 ~~~~~-g~---~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~ 280 (399)
..... .. ....+.+.++. +.....+-.+..+....+++...+.+++.+|++++||||++++|+.+++.+.+.+++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~ia~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~ 173 (211)
T cd03298 94 GLSPGLKLTAEDRQAIEVALARVGLAGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLD 173 (211)
T ss_pred ccccccCccHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHH
Confidence 32211 11 11223333322 111111111222233345566677799999999999999999999999999999998
Q ss_pred HHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 281 AKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 281 ~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
+..+. ..++++++|+++++...+++++.+.+|.++.
T Consensus 174 ~~~~~-------~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 209 (211)
T cd03298 174 LHAET-------KMTVLMVTHQPEDAKRLAQRVVFLDNGRIAA 209 (211)
T ss_pred HHHhc-------CCEEEEEecCHHHHHhhhCEEEEEECCEEee
Confidence 65431 3488999999999999999999999887654
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-20 Score=184.37 Aligned_cols=209 Identities=16% Similarity=0.122 Sum_probs=139.5
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCc---ccceeeecCCCc-----c---ccccCCeeEEecCh--H
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM---FGFSVSHTTRAP-----R---AMEKDGVHYHFTER--S 188 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~---~g~~i~~ttr~~-----~---~~~~~~i~yvfq~~--~ 188 (399)
+..+.++...+|++++|+|+||||||||+++|+|++++. .| .+....... . ....+.++|+||++ .
T Consensus 31 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG-~I~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~~ 109 (330)
T PRK09473 31 AVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGG-SATFNGREILNLPEKELNKLRAEQISMIFQDPMTS 109 (330)
T ss_pred EEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCe-EEEECCEECCcCCHHHHHHHhcCCEEEEEcCchhh
Confidence 333444566799999999999999999999999999874 67 454322111 1 11123699999997 3
Q ss_pred HHHHHHhhhhhHHHHHHhccccCCcHHHH----HHHHHc-CCc---eEEecchhhHHHHHcCCcceeEEEEcCCChHHHH
Q 015825 189 VMEKAIKDGKFLEFASVHGNLYGTSVEAV----EAVADA-GKR---CILDIDVQGARSVRASPLDAIFIFICPPSMEELE 260 (399)
Q Consensus 189 lf~~~~~~~~~~E~~~~~~~~~g~~~~~i----~~~~~~-g~~---~vldld~~g~~~l~~~~~~~~~ili~~P~lllLD 260 (399)
+++.+.....+.+...... +...... .+.++. ++. ..++..+..+....+|+...+.+++.+|+++++|
T Consensus 110 l~p~~~v~~~i~~~~~~~~---~~~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG~~QRv~IArAL~~~P~llilD 186 (330)
T PRK09473 110 LNPYMRVGEQLMEVLMLHK---GMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPKLLIAD 186 (330)
T ss_pred cCCCCCHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 3343311112223322211 2222222 222221 110 0011112222233456666777999999999999
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 261 ERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 261 Epl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
||++++|..++..+.+.|.++.++. ..++++++||++.+...+++++.+..|.++..+++.+++..|......
T Consensus 187 EPts~LD~~~~~~i~~lL~~l~~~~-------g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i~~~p~~pyt~ 259 (330)
T PRK09473 187 EPTTALDVTVQAQIMTLLNELKREF-------NTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVFYQPSHPYSI 259 (330)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHc-------CCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHH
Confidence 9999999999999999999876543 238999999999999999999999999999999988888888665544
Q ss_pred c
Q 015825 341 K 341 (399)
Q Consensus 341 ~ 341 (399)
.
T Consensus 260 ~ 260 (330)
T PRK09473 260 G 260 (330)
T ss_pred H
Confidence 3
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.8e-20 Score=183.28 Aligned_cols=208 Identities=15% Similarity=0.105 Sum_probs=139.3
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC----cccceeeecCCCc--------cccccCCeeEEecChH-
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS----MFGFSVSHTTRAP--------RAMEKDGVHYHFTERS- 188 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~----~~g~~i~~ttr~~--------~~~~~~~i~yvfq~~~- 188 (399)
+..+.++...+|++++|+|+||||||||+++|+|++++ ..| .+....... +....+.++|+||++.
T Consensus 22 ~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G-~i~~~G~~i~~~~~~~~~~~r~~~i~~v~Q~~~~ 100 (326)
T PRK11022 22 AVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAE-KLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMT 100 (326)
T ss_pred EEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcce-EEEECCEECCcCCHHHHHHHhCCCEEEEecCchh
Confidence 33444456679999999999999999999999999873 556 444322111 1111235899999963
Q ss_pred -HHHHHHhhhhhHHHHHHhccccCCcHHH----HHHHHHc-CCc---eEEecchhhHHHHHcCCcceeEEEEcCCChHHH
Q 015825 189 -VMEKAIKDGKFLEFASVHGNLYGTSVEA----VEAVADA-GKR---CILDIDVQGARSVRASPLDAIFIFICPPSMEEL 259 (399)
Q Consensus 189 -lf~~~~~~~~~~E~~~~~~~~~g~~~~~----i~~~~~~-g~~---~vldld~~g~~~l~~~~~~~~~ili~~P~lllL 259 (399)
+++.+.....+.++.... .+..... +.+.++. ++. ..++..+..+....+|++..+.+++.+|+++++
T Consensus 101 ~l~p~~~v~~~i~~~l~~~---~~~~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~QRv~iArAL~~~P~llil 177 (326)
T PRK11022 101 SLNPCYTVGFQIMEAIKVH---QGGNKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIA 177 (326)
T ss_pred hcCCcCCHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 344331111333433322 1222222 2222222 111 011112222333356667777899999999999
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhh
Q 015825 260 EERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSV 339 (399)
Q Consensus 260 DEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v 339 (399)
|||++++|..++.++.+.|+++.++. ..++++++||++.+...+++++.+..|+++..+++.+++..|.....
T Consensus 178 DEPts~LD~~~~~~il~lL~~l~~~~-------g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~~~~p~hpyt 250 (326)
T PRK11022 178 DEPTTALDVTIQAQIIELLLELQQKE-------NMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRHPYT 250 (326)
T ss_pred eCCCCCCCHHHHHHHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhhCCCChHH
Confidence 99999999999999999999876542 23899999999999999999999999999999988888877765443
Q ss_pred h
Q 015825 340 S 340 (399)
Q Consensus 340 ~ 340 (399)
.
T Consensus 251 ~ 251 (326)
T PRK11022 251 Q 251 (326)
T ss_pred H
Confidence 3
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.1e-20 Score=160.80 Aligned_cols=220 Identities=14% Similarity=0.092 Sum_probs=159.0
Q ss_pred HHHHHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeee--------cCCCc-------c--
Q 015825 111 REQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSH--------TTRAP-------R-- 173 (399)
Q Consensus 111 ~~l~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~--------ttr~~-------~-- 173 (399)
+++-|.+|.--+....+....+|.++.|+|.|||||||++++|.=+..|..| .|.. +++.- +
T Consensus 10 ~dlHK~~G~~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G-~I~v~geei~~k~~~~G~l~~ad~~q~ 88 (256)
T COG4598 10 EDLHKRYGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAG-SIRVNGEEIRLKRDKDGQLKPADKRQL 88 (256)
T ss_pred hHHHhhcccchhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCc-eEEECCeEEEeeeCCCCCeeeCCHHHH
Confidence 4555777765555555555679999999999999999999999999999887 3331 11110 0
Q ss_pred ccccCCeeEEecChHHHHHHHhhhhhHHHHHHh-ccccCCcHHHHHHHHHcCCc-----eEEecchhhHHHHHcCCccee
Q 015825 174 AMEKDGVHYHFTERSVMEKAIKDGKFLEFASVH-GNLYGTSVEAVEAVADAGKR-----CILDIDVQGARSVRASPLDAI 247 (399)
Q Consensus 174 ~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~-~~~~g~~~~~i~~~~~~g~~-----~vldld~~g~~~l~~~~~~~~ 247 (399)
...+...+++||++.+|.+| +++||+.-. -+..|.++.+..+..+..+. .--+.-|..+...++|+...+
T Consensus 89 ~r~Rs~L~mVFQ~FNLWsHm----tvLeNViEaPvhVLg~~k~ea~e~Ae~~L~kVGi~ek~~~YP~~LSGGQQQR~aIA 164 (256)
T COG4598 89 QRLRTRLGMVFQHFNLWSHM----TVLENVIEAPVHVLGVSKAEAIERAEKYLAKVGIAEKADAYPAHLSGGQQQRVAIA 164 (256)
T ss_pred HHHHHHhhHhhhhcchhHHH----HHHHHHHhcchHhhcCCHHHHHHHHHHHHHHhCchhhhhcCccccCchHHHHHHHH
Confidence 11123478999999999999 899887433 34466666655544332111 111111211222244555666
Q ss_pred EEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCC
Q 015825 248 FIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTS 327 (399)
Q Consensus 248 ~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~ 327 (399)
.+|+..|+..++|||++++||+.-.++.+.++.+.++ .-|.|++||.+.-|-+...+++-+.+|.+..+|+|
T Consensus 165 RaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeE--------grTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~P 236 (256)
T COG4598 165 RALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEE--------GRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGPP 236 (256)
T ss_pred HHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHh--------CCeEEEEeeehhHHHhhhhheEEeecceecccCCh
Confidence 7999999999999999999998888888888876643 22899999999999999999999999999999999
Q ss_pred ccccCCCcchhhhccc
Q 015825 328 PKGIDLPADHSVSKVA 343 (399)
Q Consensus 328 ~~~~~~p~~~~v~~~~ 343 (399)
++++.+|....+.++.
T Consensus 237 ~qvf~nP~S~RlkqFl 252 (256)
T COG4598 237 EQVFGNPQSPRLKQFL 252 (256)
T ss_pred HHHhcCCCCHHHHHHH
Confidence 9999999887777653
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.1e-20 Score=172.97 Aligned_cols=190 Identities=13% Similarity=0.094 Sum_probs=127.3
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc--------cccCCeeEEecChHHHHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA--------MEKDGVHYHFTERSVMEKA 193 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~--------~~~~~i~yvfq~~~lf~~~ 193 (399)
+....++...+|++++|+||||||||||+++|+|++++..| .+......... .....++|+||++.+|+.+
T Consensus 24 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 102 (233)
T PRK11629 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSG-DVIFNGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDF 102 (233)
T ss_pred eEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEEcCcCCHHHHHHHHhccEEEEecCcccCCCC
Confidence 33334455668999999999999999999999999999888 55443221110 1124689999997766554
Q ss_pred HhhhhhHHHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCC
Q 015825 194 IKDGKFLEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGT 268 (399)
Q Consensus 194 ~~~~~~~E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~ 268 (399)
++.+++.+....++..... +.+.++. +....++-.+..+....+++...+.+++.+|++++||||++++|+
T Consensus 103 ----tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrl~la~al~~~p~lllLDEPt~~LD~ 178 (233)
T PRK11629 103 ----TALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDA 178 (233)
T ss_pred ----CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCH
Confidence 6777776543222222222 2222222 111111111222222345666777799999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeec
Q 015825 269 ETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNH 324 (399)
Q Consensus 269 ~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~ 324 (399)
.+++.+.+.++++.++ ...++++++|+++++.. +++++.+.+|.++..
T Consensus 179 ~~~~~l~~~l~~~~~~-------~g~tvii~sH~~~~~~~-~~~~~~l~~G~i~~~ 226 (233)
T PRK11629 179 RNADSIFQLLGELNRL-------QGTAFLVVTHDLQLAKR-MSRQLEMRDGRLTAE 226 (233)
T ss_pred HHHHHHHHHHHHHHHh-------CCCEEEEEeCCHHHHHh-hCEEEEEECCEEEEE
Confidence 9999999999886532 13488999999998765 568888888877653
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.8e-20 Score=172.07 Aligned_cols=198 Identities=14% Similarity=0.108 Sum_probs=136.8
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--ccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
.+....+|++++|+||||||||||+++|+|.+++..| .+........ ......++|+||++.+|..+ ++.+++
T Consensus 19 i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G-~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~----t~~~nl 93 (232)
T cd03300 19 VSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSG-EILLDGKDITNLPPHKRPVNTVFQNYALFPHL----TVFENI 93 (232)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEEcCcCChhhcceEEEecccccCCCC----cHHHHH
Confidence 3344568999999999999999999999999999888 4443221110 11134689999998776544 666766
Q ss_pred HHhccccCCcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHH
Q 015825 204 SVHGNLYGTSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRL 278 (399)
Q Consensus 204 ~~~~~~~g~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L 278 (399)
.+....++.... .+...++. +....++..+..+....+++...+.+++.+|++++||||++++|+.+++.+.+.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l 173 (232)
T cd03300 94 AFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLEL 173 (232)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHH
Confidence 554333332222 22222222 2222222222223333455666777999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 279 RNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 279 ~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
.++.++. ..++++++|+++++...+++++.+.+|.+...+++.+....+.
T Consensus 174 ~~~~~~~-------~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~~~ 223 (232)
T cd03300 174 KRLQKEL-------GITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEEPA 223 (232)
T ss_pred HHHHHHc-------CCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhCCc
Confidence 9875431 2389999999999988999999999998887776665655543
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.4e-20 Score=175.32 Aligned_cols=191 Identities=15% Similarity=0.109 Sum_probs=129.4
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHH
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~ 202 (399)
..+.+....+|++++|+||||||||||+++|+|++++..| .+......... ....++|+||++.+++.. ++.++
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~-~~~~~~~v~q~~~~~~~~----tv~e~ 90 (255)
T PRK11248 17 LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHG-SITLDGKPVEG-PGAERGVVFQNEGLLPWR----NVQDN 90 (255)
T ss_pred EeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEECCC-CCCcEEEEeCCCccCCCC----cHHHH
Confidence 3334455669999999999999999999999999999888 55432221111 112379999997766544 67777
Q ss_pred HHHhccccCCcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHH
Q 015825 203 ASVHGNLYGTSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (399)
Q Consensus 203 ~~~~~~~~g~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~ 277 (399)
+.+....++.... .+.+.++. +....++-.+..+....+++...+.+++.+|++++||||++++|+.+.+.+.+.
T Consensus 91 l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~ 170 (255)
T PRK11248 91 VAFGLQLAGVEKMQRLEIAHQMLKKVGLEGAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTL 170 (255)
T ss_pred HHhHHHHcCCCHHHHHHHHHHHHHHcCChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 6654322232222 22222222 111111112222233345666677799999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc--CCeeeecCC
Q 015825 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD--GSIATNHQT 326 (399)
Q Consensus 278 L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~--~~~~~~~~~ 326 (399)
|.++.++- ..++|+++|+++++...+++++.+. +|.++...+
T Consensus 171 L~~~~~~~-------g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~ 214 (255)
T PRK11248 171 LLKLWQET-------GKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLP 214 (255)
T ss_pred HHHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEec
Confidence 98864321 3488999999999999999999887 477766543
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.9e-20 Score=173.92 Aligned_cols=197 Identities=15% Similarity=0.121 Sum_probs=135.2
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-----ccccCCeeEEecChHHHHHHHhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-----AMEKDGVHYHFTERSVMEKAIKD 196 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-----~~~~~~i~yvfq~~~lf~~~~~~ 196 (399)
+..+.+....+|++++|+||||||||||+++|+|.+++..| .+........ .....+++|+||++.+|+.+
T Consensus 17 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~--- 92 (242)
T TIGR03411 17 ALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEG-SVLFGGTDLTGLPEHQIARAGIGRKFQKPTVFENL--- 92 (242)
T ss_pred EeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC-eEEECCeecCCCCHHHHHhcCeeEeccccccCCCC---
Confidence 34444455669999999999999999999999999999888 5554322211 11224689999998777655
Q ss_pred hhhHHHHHHhccc--------cCCcH----HHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHH
Q 015825 197 GKFLEFASVHGNL--------YGTSV----EAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERL 263 (399)
Q Consensus 197 ~~~~E~~~~~~~~--------~g~~~----~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl 263 (399)
++.+++.+.... ++... ..+.+.++. +....++-.+..+....++++..+.+++.+|++++||||+
T Consensus 93 -tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrv~laral~~~p~~lllDEPt 171 (242)
T TIGR03411 93 -TVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADEADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPV 171 (242)
T ss_pred -CHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecCCc
Confidence 677776653211 11111 122222222 1111112112222223455666777999999999999999
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 264 RARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 264 ~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+++|+.+++.+.+.++++.. ..++++++|+++++...+++++.+.+|.++..+++.++..
T Consensus 172 ~~LD~~~~~~l~~~l~~~~~---------~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 172 AGMTDEETEKTAELLKSLAG---------KHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred cCCCHHHHHHHHHHHHHHhc---------CCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 99999999999999988642 1288999999999999999999999998887776665543
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.3e-20 Score=171.74 Aligned_cols=182 Identities=14% Similarity=0.136 Sum_probs=124.9
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------ccccCCeeEEecChHHHHHHHhhhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
.+....+|++++|+||||||||||+++|+|.+++..| .+........ ......++|+||++.+|+.+ +
T Consensus 20 ~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~----t 94 (214)
T cd03292 20 INISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSG-TIRVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDR----N 94 (214)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEEcccCCHHHHHHHHHheEEEecCchhccCC----c
Confidence 3345569999999999999999999999999999888 5543221110 11234689999998777655 6
Q ss_pred hHHHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 199 FLEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
+.+++.+....++...+. +.+.++. +....++-.+..+....+++...+.+++.+|++++||||++++|+.+++.
T Consensus 95 ~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 174 (214)
T cd03292 95 VYENVAFALEVTGVPPREIRKRVPAALELVGLSHKHRALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWE 174 (214)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHH
Confidence 777776543323322222 2222322 11111111222222334566667779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCe
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSI 320 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~ 320 (399)
+.+.++++.++ ..++++++|+++.+...+++++.+.+|.
T Consensus 175 ~~~~l~~~~~~--------~~tiiivtH~~~~~~~~~d~i~~l~~G~ 213 (214)
T cd03292 175 IMNLLKKINKA--------GTTVVVATHAKELVDTTRHRVIALERGK 213 (214)
T ss_pred HHHHHHHHHHc--------CCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 99999886432 2388999999999888888888887663
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.2e-20 Score=173.87 Aligned_cols=196 Identities=14% Similarity=0.111 Sum_probs=133.1
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc---cccccCCeeEEecChHHHHHHHhhhhh
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEKAIKDGKF 199 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~~i~yvfq~~~lf~~~~~~~~~ 199 (399)
....+....+|++++|+||||||||||+++|+|+++|..| .+....... .......++|+||++.+++.+ ++
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~i~~~~~~~~~~i~~~~q~~~~~~~~----t~ 91 (236)
T TIGR03864 17 LDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEG-QISVAGHDLRRAPRAALARLGVVFQQPTLDLDL----SV 91 (236)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCce-EEEECCEEcccCChhhhhhEEEeCCCCCCcccC----cH
Confidence 3333445569999999999999999999999999999888 554322111 011123589999987665544 67
Q ss_pred HHHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHH
Q 015825 200 LEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQI 274 (399)
Q Consensus 200 ~E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i 274 (399)
.+++.+....++..... +.+.++. +....++-.+..+....+++...+.+++.+|++++||||++++|+.+++.+
T Consensus 92 ~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~l 171 (236)
T TIGR03864 92 RQNLRYHAALHGLSRAEARERIAALLARLGLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAI 171 (236)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHH
Confidence 77766544333332221 2222222 111111112222223345666777799999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 275 LKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 275 ~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
.+.|.++.++. ..++++++|+++++. .+++++.+.+|.++..+++.++.
T Consensus 172 ~~~l~~~~~~~-------~~tiii~sH~~~~~~-~~d~i~~l~~G~i~~~~~~~~~~ 220 (236)
T TIGR03864 172 VAHVRALCRDQ-------GLSVLWATHLVDEIE-ADDRLVVLHRGRVLADGAAAELR 220 (236)
T ss_pred HHHHHHHHHhC-------CCEEEEEecChhhHh-hCCEEEEEeCCeEEEeCCHHHHH
Confidence 99998865321 238899999999986 49999999999888777655544
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.1e-20 Score=174.96 Aligned_cols=202 Identities=13% Similarity=0.067 Sum_probs=137.8
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----------------cccccCCeeEEe
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----------------RAMEKDGVHYHF 184 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----------------~~~~~~~i~yvf 184 (399)
+..+.+....+|++++|+||||||||||+++|+|++++..| .+....... .......++|+|
T Consensus 20 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~v~ 98 (257)
T PRK10619 20 VLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEG-SIVVNGQTINLVRDKDGQLKVADKNQLRLLRTRLTMVF 98 (257)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCEEcccccccccccccccchHHHHHhhceEEEe
Confidence 33334455569999999999999999999999999999888 554322111 111234689999
Q ss_pred cChHHHHHHHhhhhhHHHHHHhc-cccCCcHH----HHHHHHHc-CCceEE-ecchhhHHHHHcCCcceeEEEEcCCChH
Q 015825 185 TERSVMEKAIKDGKFLEFASVHG-NLYGTSVE----AVEAVADA-GKRCIL-DIDVQGARSVRASPLDAIFIFICPPSME 257 (399)
Q Consensus 185 q~~~lf~~~~~~~~~~E~~~~~~-~~~g~~~~----~i~~~~~~-g~~~vl-dld~~g~~~l~~~~~~~~~ili~~P~ll 257 (399)
|++.+++.+ ++.|++.+.. ..++.... .+.+.++. +....+ +-.+..+....+++...+.+++.+|+++
T Consensus 99 q~~~l~~~~----sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G~~qrv~laral~~~p~ll 174 (257)
T PRK10619 99 QHFNLWSHM----TVLENVMEAPIQVLGLSKQEARERAVKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVL 174 (257)
T ss_pred cCcccCCCC----cHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHhcCCCEE
Confidence 998776654 6777765422 12222222 22222222 111110 1111222233455666777999999999
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcc
Q 015825 258 ELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPAD 336 (399)
Q Consensus 258 lLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~ 336 (399)
+||||++++|+.+++.+.+.|+++.++ ..++++++|+++++...+++++.+.+|.++..+++.++...|..
T Consensus 175 llDEPt~~LD~~~~~~l~~~l~~l~~~--------g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 245 (257)
T PRK10619 175 LFDEPTSALDPELVGEVLRIMQQLAEE--------GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQS 245 (257)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHhc--------CCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhhhCccC
Confidence 999999999999999999998876432 34889999999999888999999999999887776666655543
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.8e-20 Score=174.72 Aligned_cols=200 Identities=12% Similarity=0.115 Sum_probs=135.5
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----cccccCCeeEEecChHHHHHHHhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSVMEKAIKD 196 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~lf~~~~~~ 196 (399)
+..+.+....+|++++|+||||||||||+++|+|+.++..| .+....... ......+++|+||++.+|+.+
T Consensus 20 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~--- 95 (255)
T PRK11300 20 AVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGG-TILLRGQHIEGLPGHQIARMGVVRTFQHVRLFREM--- 95 (255)
T ss_pred EEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcc-eEEECCEECCCCCHHHHHhcCeEEeccCcccCCCC---
Confidence 34444455669999999999999999999999999999888 554322211 111123578999998777655
Q ss_pred hhhHHHHHHhcc----------ccCC-----c-H---HHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCCh
Q 015825 197 GKFLEFASVHGN----------LYGT-----S-V---EAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSM 256 (399)
Q Consensus 197 ~~~~E~~~~~~~----------~~g~-----~-~---~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~l 256 (399)
++.+++.+... .++. . . ..+.+.++. +....++-.+..+....++++..+.+++.+|++
T Consensus 96 -tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 174 (255)
T PRK11300 96 -TVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEI 174 (255)
T ss_pred -cHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhhhhCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 67777665321 1110 0 0 111222221 111111111222222345666777799999999
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 257 EELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 257 llLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
++||||++++|+.++..+.+.|.++.++. ..++++++|+++++...+++++.+.+|.++..+++.++...
T Consensus 175 lllDEPt~~LD~~~~~~l~~~L~~~~~~~-------~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 244 (255)
T PRK11300 175 LMLDEPAAGLNPKETKELDELIAELRNEH-------NVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRNN 244 (255)
T ss_pred EEEcCCccCCCHHHHHHHHHHHHHHHhhc-------CCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHHHHhhC
Confidence 99999999999999999999999875431 24889999999999999999999999998877776655443
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.4e-20 Score=177.99 Aligned_cols=197 Identities=15% Similarity=0.081 Sum_probs=135.8
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChH-HHHHHHhhhhhH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERS-VMEKAIKDGKFL 200 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~-lf~~~~~~~~~~ 200 (399)
.++...+|++++|+||||||||||+++|+|+++|..| .+....... .......++|+||++. .+... ++.
T Consensus 23 vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~----tv~ 97 (277)
T PRK13652 23 INFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSG-SVLIRGEPITKENIREVRKFVGLVFQNPDDQIFSP----TVE 97 (277)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEECCcCCHHHHHhheEEEecCcccccccc----cHH
Confidence 3445569999999999999999999999999999888 554322111 1112345899999864 22222 677
Q ss_pred HHHHHhccccCCcHHHH----HHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHH
Q 015825 201 EFASVHGNLYGTSVEAV----EAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQIL 275 (399)
Q Consensus 201 E~~~~~~~~~g~~~~~i----~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~ 275 (399)
+++.+....++...+.. .+.++. +....++-.+..+....+++...+.+++.+|++++||||++++|+.++..+.
T Consensus 98 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~llilDEPt~gLD~~~~~~l~ 177 (277)
T PRK13652 98 QDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELI 177 (277)
T ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 77765433333333322 222222 1111111112222233455566677999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 276 KRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 276 ~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
+.++++.++. ..++++++|+++++.+.+++++.+.+|.++..+++.+++..+
T Consensus 178 ~~l~~l~~~~-------g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 229 (277)
T PRK13652 178 DFLNDLPETY-------GMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229 (277)
T ss_pred HHHHHHHHhc-------CCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcCH
Confidence 9998876432 238899999999999999999999999998888777666543
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.9e-20 Score=169.27 Aligned_cols=184 Identities=17% Similarity=0.127 Sum_probs=122.2
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHH-HHHHHhhh
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSV-MEKAIKDG 197 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~l-f~~~~~~~ 197 (399)
..+.+....+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||++.. ++.+
T Consensus 17 l~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~~---- 91 (211)
T cd03225 17 LDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSG-EVLVDGKDLTKLSLKELRRKVGLVFQNPDDQFFGP---- 91 (211)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEEcccCCHHHHHhhceEEecChhhhcCCC----
Confidence 3334445569999999999999999999999999999888 554322111 11123458999998643 3333
Q ss_pred hhHHHHHHhccccCCcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 198 KFLEFASVHGNLYGTSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
++.+++.+....++.... .+.+.++. +....++-.+..+....+++...+.+++.+|++++||||++++|+.+++
T Consensus 92 t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 171 (211)
T cd03225 92 TVEEEVAFGLENLGLPEEEIEERVEEALELVGLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRR 171 (211)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 666776553322222222 12222222 1111111111222223455666777999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
.+.+.|.++..+ ..++++++|+++++...+++++.+.+|
T Consensus 172 ~~~~~l~~~~~~--------~~tvi~~sH~~~~~~~~~d~i~~l~~G 210 (211)
T cd03225 172 ELLELLKKLKAE--------GKTIIIVTHDLDLLLELADRVIVLEDG 210 (211)
T ss_pred HHHHHHHHHHHc--------CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999876532 238899999999998888998887665
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.3e-20 Score=175.54 Aligned_cols=187 Identities=16% Similarity=0.103 Sum_probs=131.2
Q ss_pred ccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHH
Q 015825 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 125 s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~ 204 (399)
..+....+|++++|+||||||||||+++|+|++++..| .+........ .....++|+||++.+|+.+ ++.+++.
T Consensus 30 ~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G-~i~~~g~~~~-~~~~~i~~v~q~~~l~~~~----tv~enl~ 103 (257)
T PRK11247 30 QLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAG-ELLAGTAPLA-EAREDTRLMFQDARLLPWK----KVIDNVG 103 (257)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe-EEEECCEEHH-HhhCceEEEecCccCCCCC----cHHHHHH
Confidence 34445568999999999999999999999999999888 5543222211 1124589999997766544 7777776
Q ss_pred HhccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 015825 205 VHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKE 283 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~ 283 (399)
+.. +......+.+.++. +....++-.+..+....+++...+.+++.+|++++||||++++|+.++..+.+.|.++.+
T Consensus 104 ~~~--~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~ 181 (257)
T PRK11247 104 LGL--KGQWRDAALQALAAVGLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQ 181 (257)
T ss_pred hcc--cchHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH
Confidence 532 11112233333332 111111222222333345666777799999999999999999999999999999988654
Q ss_pred HHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCC
Q 015825 284 EIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQT 326 (399)
Q Consensus 284 ~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~ 326 (399)
+. ..++++++|+++.+...+++++.+.+|.++..++
T Consensus 182 ~~-------~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~ 217 (257)
T PRK11247 182 QH-------GFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLT 217 (257)
T ss_pred Hc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecc
Confidence 31 2388999999999988899999999998876554
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.5e-20 Score=178.46 Aligned_cols=196 Identities=12% Similarity=0.074 Sum_probs=135.7
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc------cccccCCeeEEecChHH-HHHHHhhhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP------RAMEKDGVHYHFTERSV-MEKAIKDGK 198 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~l-f~~~~~~~~ 198 (399)
.+....+|++++|+||||||||||+++|+|+.++..| .+....... .......++|+||++.. +... +
T Consensus 25 vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G-~i~i~g~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~----t 99 (283)
T PRK13636 25 ININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSG-RILFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSA----S 99 (283)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcc-EEEECCEECCCCcchHHHHHhhEEEEecCcchhhccc----c
Confidence 3345568999999999999999999999999999888 554433221 11123468999998632 2222 6
Q ss_pred hHHHHHHhccccCCcHHHH----HHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 199 FLEFASVHGNLYGTSVEAV----EAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~i----~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
+.+++.+....++.+.... ...++. +.....+-.+..+....+++...+.+++.+|++++||||++++|+.++..
T Consensus 100 v~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~lLilDEPt~gLD~~~~~~ 179 (283)
T PRK13636 100 VYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSE 179 (283)
T ss_pred HHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 7777765433334333322 222222 11111111122222234556667779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+.+.++++.++. ..++++++|+++++...+++++.+.+|.++..+++.++...
T Consensus 180 l~~~l~~l~~~~-------g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 180 IMKLLVEMQKEL-------GLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHHHHHHHHHhC-------CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999998875432 23899999999999989999999999999888877666543
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=4.2e-20 Score=178.36 Aligned_cols=194 Identities=14% Similarity=0.112 Sum_probs=133.5
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC----ccccccCCeeEEecChH-HHHHHHhhhhhH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTERS-VMEKAIKDGKFL 200 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~~i~yvfq~~~-lf~~~~~~~~~~ 200 (399)
.+....+|++++|+||||||||||+++|+|..+|..| .+...... ........++|+||++. .+... ++.
T Consensus 26 vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G-~i~~~g~~i~~~~~~~~~~~i~~~~q~~~~~~~~~----tv~ 100 (279)
T PRK13635 26 VSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAG-TITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGA----TVQ 100 (279)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-EEEECCEECCcCcHHHHhhheEEEEeCHHHhcccc----cHH
Confidence 3345569999999999999999999999999999888 55432211 11112346899999974 44433 777
Q ss_pred HHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHH
Q 015825 201 EFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQIL 275 (399)
Q Consensus 201 E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~ 275 (399)
+++.+....++..... +...+.. ++...++..+..+....+++...+.+++.+|++++||||++++|+.++..+.
T Consensus 101 enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~ 180 (279)
T PRK13635 101 DDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVL 180 (279)
T ss_pred HHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 8876643333333322 2222222 2211111122222223455666777999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 276 KRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 276 ~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+.|+++..+. ..++++++|+++++. .+++++.+.+|.++..+++.++..
T Consensus 181 ~~l~~l~~~~-------~~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~ 229 (279)
T PRK13635 181 ETVRQLKEQK-------GITVLSITHDLDEAA-QADRVIVMNKGEILEEGTPEEIFK 229 (279)
T ss_pred HHHHHHHHcC-------CCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHhc
Confidence 9999875431 348999999999886 599999999998887776655443
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=1e-19 Score=171.64 Aligned_cols=200 Identities=14% Similarity=0.132 Sum_probs=135.3
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----cccccCCeeEEecChHHHHHHHh
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSVMEKAIK 195 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~lf~~~~~ 195 (399)
.+..+.+....+|++++|+||||||||||+++|+|+.++..| .+....... ......+++|+||++.+++.+
T Consensus 17 ~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-- 93 (241)
T PRK10895 17 RVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAG-NIIIDDEDISLLPLHARARRGIGYLPQEASIFRRL-- 93 (241)
T ss_pred EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEECCCCCHHHHHHhCeEEeccCCcccccC--
Confidence 344444455679999999999999999999999999999888 554322211 111134689999998766654
Q ss_pred hhhhHHHHHHhccccC-CcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 196 DGKFLEFASVHGNLYG-TSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 196 ~~~~~E~~~~~~~~~g-~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
++.+++.+....++ .... .+.+.++. +.....+..+..+....+++...+.+++.+|++++||||++++|+.
T Consensus 94 --tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~ 171 (241)
T PRK10895 94 --SVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQSLSGGERRRVEIARALAANPKFILLDEPFAGVDPI 171 (241)
T ss_pred --cHHHHHhhhhhcccccCHHHHHHHHHHHHHHcCCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHH
Confidence 67777665432221 1111 12222222 1111111111112223455666777999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+++.+.+.+..+..+ ..++++++|+++++...+++++.+.+|.++..+++.++...
T Consensus 172 ~~~~l~~~l~~~~~~--------g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 172 SVIDIKRIIEHLRDS--------GLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred HHHHHHHHHHHHHhc--------CCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 999998888875421 23889999999999999999999999998877776655443
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=6.2e-20 Score=171.04 Aligned_cols=185 Identities=12% Similarity=0.072 Sum_probs=127.0
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------ccccCCeeEEecChHHHHHHHhhhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
.+....+|++++|+||||||||||+++|+|++++..| .+........ ......++|+||++.+++.+ +
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~~i~~~~q~~~~~~~~----t 95 (222)
T PRK10908 21 VTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAG-KIWFSGHDITRLKNREVPFLRRQIGMIFQDHHLLMDR----T 95 (222)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEcccCChhHHHHHHhheEEEecCccccccc----c
Confidence 3445569999999999999999999999999999888 5543221111 01234689999998766554 6
Q ss_pred hHHHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 199 FLEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
+.+++.+....++..... +.+.++. +....++-.+..+....+++...+.+++.+|++++||||++++|+.+++.
T Consensus 96 v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 175 (222)
T PRK10908 96 VYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEG 175 (222)
T ss_pred HHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhhhhCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHH
Confidence 777776543333333222 2222222 11111111122222234566667779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
+.+.+.++.++ ..++++++|+++++...+++++.+.+|.++.
T Consensus 176 l~~~l~~~~~~--------~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 176 ILRLFEEFNRV--------GVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHHHHHHC--------CCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99998876432 2388999999999998899999998887653
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.8e-20 Score=179.32 Aligned_cols=194 Identities=12% Similarity=0.110 Sum_probs=133.7
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--------cccccCCeeEEecChH-HHHHHHhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--------RAMEKDGVHYHFTERS-VMEKAIKD 196 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--------~~~~~~~i~yvfq~~~-lf~~~~~~ 196 (399)
.+....+|++++|+||||||||||+++|+|+++|..| .+....... ......+++|+||++. .+..+
T Consensus 26 vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~~~~ig~v~q~~~~~~~~~--- 101 (287)
T PRK13641 26 ISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG-TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFEN--- 101 (287)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEECccccccchHHHHHhceEEEEeChhhhhccc---
Confidence 3345569999999999999999999999999999988 554432211 1112346899999863 22233
Q ss_pred hhhHHHHHHhccccCCcHHHHH----HHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 197 GKFLEFASVHGNLYGTSVEAVE----AVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 197 ~~~~E~~~~~~~~~g~~~~~i~----~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
++.+++.+....++...+... +.++. +.. .+.+..+..+....+++...+.+++.+|++++||||++++|+.+
T Consensus 102 -tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrl~laral~~~p~lLlLDEPt~gLD~~~ 180 (287)
T PRK13641 102 -TVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEG 180 (287)
T ss_pred -hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHH
Confidence 677777654333333333222 22222 111 11111112222234566677779999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
++.+.+.|+++.++ ..++++++|+++.+...+++++.+.+|.++..+++.++..
T Consensus 181 ~~~l~~~l~~l~~~--------g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 181 RKEMMQLFKDYQKA--------GHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHHHHHHHHhC--------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999876421 2388999999999999999999999999888777665544
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.5e-20 Score=172.29 Aligned_cols=197 Identities=13% Similarity=0.100 Sum_probs=132.0
Q ss_pred HHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc---cccccCCeeEEec-ChHHH
Q 015825 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFT-ERSVM 190 (399)
Q Consensus 115 ~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~~i~yvfq-~~~lf 190 (399)
+.+|...+..+.+....+|++++|+||||||||||+++|+|+++|..| .+....... .......++|+|+ ...++
T Consensus 29 ~~~~~~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~i~~~~~~~~~~~ 107 (236)
T cd03267 29 RKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSG-EVRVAGLVPWKRRKKFLRRIGVVFGQKTQLW 107 (236)
T ss_pred cccCCeeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCce-EEEECCEEccccchhhcccEEEEcCCccccC
Confidence 556666666556666779999999999999999999999999999888 554322111 1112345889984 44444
Q ss_pred HHHHhhhhhHHHHHHhccccCCcHHHHH----HHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHh
Q 015825 191 EKAIKDGKFLEFASVHGNLYGTSVEAVE----AVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRA 265 (399)
Q Consensus 191 ~~~~~~~~~~E~~~~~~~~~g~~~~~i~----~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~ 265 (399)
+.+ ++.+++.+....++....... ..++. +.....+-.+..+....+++...+.+++.+|++++||||+++
T Consensus 108 ~~~----tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~ 183 (236)
T cd03267 108 WDL----PVIDSFYLLAAIYDLPPARFKKRLDELSELLDLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIG 183 (236)
T ss_pred CCC----cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCC
Confidence 443 566666554333333322222 22221 111111111122222345566677799999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 266 RGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 266 lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
+|+.+.+.+.+.|.++.++ ...++++++|+++++...+++++.+.+|.+..
T Consensus 184 LD~~~~~~l~~~l~~~~~~-------~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 234 (236)
T cd03267 184 LDVVAQENIRNFLKEYNRE-------RGTTVLLTSHYMKDIEALARRVLVIDKGRLLY 234 (236)
T ss_pred CCHHHHHHHHHHHHHHHhc-------CCCEEEEEecCHHHHHHhCCEEEEEeCCEEEe
Confidence 9999999999999886532 13488999999999988899999998887654
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.7e-20 Score=174.66 Aligned_cols=207 Identities=13% Similarity=0.085 Sum_probs=136.3
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChH--HHHHHHh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERS--VMEKAIK 195 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~--lf~~~~~ 195 (399)
+..+.+....+|++++|+||||||||||+++|+|+++|..| .+....... .......++|+||++. +++..
T Consensus 28 ~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~-- 104 (267)
T PRK15112 28 AVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSG-ELLIDDHPLHFGDYSYRSQRIRMIFQDPSTSLNPRQ-- 104 (267)
T ss_pred eeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCC-EEEECCEECCCCchhhHhccEEEEecCchhhcCcch--
Confidence 33344455679999999999999999999999999999989 554322111 1111235899999864 22332
Q ss_pred hhhhHHHHHHhcccc-CCcHH----HHHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCC
Q 015825 196 DGKFLEFASVHGNLY-GTSVE----AVEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGT 268 (399)
Q Consensus 196 ~~~~~E~~~~~~~~~-g~~~~----~i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~ 268 (399)
++.+++.+....+ +.... .+.+.++. +.. ...+..+..+....+++...+.+++.+|++++||||++++|+
T Consensus 105 --tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~ 182 (267)
T PRK15112 105 --RISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDM 182 (267)
T ss_pred --hHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCH
Confidence 3444443321111 11211 22222222 110 011111112222345566667789999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 269 ETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 269 ~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
.+++.+.+.|.++.++. ..++|+++|+++++...+++++.+.+|.+...+++.++...|.....+
T Consensus 183 ~~~~~l~~~l~~~~~~~-------g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 247 (267)
T PRK15112 183 SMRSQLINLMLELQEKQ-------GISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLASPLHELTK 247 (267)
T ss_pred HHHHHHHHHHHHHHHHc-------CcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhcCCCCHHHH
Confidence 99999999999875432 238899999999998889999999999998888777777766554444
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.3e-20 Score=177.77 Aligned_cols=195 Identities=12% Similarity=0.037 Sum_probs=134.1
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-----ccccCCeeEEecChHH-HHHHHhhhhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-----AMEKDGVHYHFTERSV-MEKAIKDGKF 199 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-----~~~~~~i~yvfq~~~l-f~~~~~~~~~ 199 (399)
.++...+|++++|+||||||||||+++|+|++++..| .+........ ......++|+||++.. +... ++
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~----tv 95 (274)
T PRK13644 21 INLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKG-KVLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGR----TV 95 (274)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEECCccccHHHHHhheEEEEEChhhhcccc----hH
Confidence 3445569999999999999999999999999999888 5544322111 1123468999998753 3333 67
Q ss_pred HHHHHHhccccCCcHHHHHH----HHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHH
Q 015825 200 LEFASVHGNLYGTSVEAVEA----VADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQI 274 (399)
Q Consensus 200 ~E~~~~~~~~~g~~~~~i~~----~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i 274 (399)
.+++.+....++.......+ .++. +.....+-.+..+....+++...+.+++.+|++++||||++++|+.++..+
T Consensus 96 ~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l 175 (274)
T PRK13644 96 EEDLAFGPENLCLPPIEIRKRVDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAV 175 (274)
T ss_pred HHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHH
Confidence 77776644333333332222 2221 111111111222222345566677799999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 275 LKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 275 ~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
.+.++++.++ ..++++++|+++++ ..+++++.+.+|.++..+++.+++..+
T Consensus 176 ~~~l~~l~~~--------g~til~~tH~~~~~-~~~d~v~~l~~G~i~~~g~~~~~~~~~ 226 (274)
T PRK13644 176 LERIKKLHEK--------GKTIVYITHNLEEL-HDADRIIVMDRGKIVLEGEPENVLSDV 226 (274)
T ss_pred HHHHHHHHhC--------CCEEEEEecCHHHH-hhCCEEEEEECCEEEEECCHHHHhcCh
Confidence 9999886531 34889999999988 569999999999998877776665544
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.6e-19 Score=173.03 Aligned_cols=200 Identities=15% Similarity=0.102 Sum_probs=135.2
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------ccccCCeeEEecChH--HHH
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERS--VME 191 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~~i~yvfq~~~--lf~ 191 (399)
.+..+.+....+|++++|+||||||||||+++|+|++++..| .+........ ......++|+||++. +++
T Consensus 25 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 103 (265)
T TIGR02769 25 PVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQG-TVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNP 103 (265)
T ss_pred EEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEEccccCHHHHHHHhhceEEEecChhhhcCC
Confidence 344444556679999999999999999999999999999888 5543221111 011346899999863 233
Q ss_pred HHHhhhhhHHHHHHhcc-ccCCcH----HHHHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHH
Q 015825 192 KAIKDGKFLEFASVHGN-LYGTSV----EAVEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (399)
Q Consensus 192 ~~~~~~~~~E~~~~~~~-~~g~~~----~~i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~ 264 (399)
.+ ++.+++.+... ..+... ..+.+.++. +.. ..++..+..+....+++...+.+++.+|++++||||++
T Consensus 104 ~~----tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qrv~laral~~~p~illLDEPt~ 179 (265)
T TIGR02769 104 RM----TVRQIIGEPLRHLTSLDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVS 179 (265)
T ss_pred CC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 23 55565543211 111111 222233322 221 12222222233334566667779999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 265 ARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 265 ~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
++|+.+++.+.+.|+++.++. ..++++++|+++.+...+++++.+.+|.++..+++.++..
T Consensus 180 ~LD~~~~~~l~~~l~~~~~~~-------g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (265)
T TIGR02769 180 NLDMVLQAVILELLRKLQQAF-------GTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLS 240 (265)
T ss_pred cCCHHHHHHHHHHHHHHHHhc-------CcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcC
Confidence 999999999999999875431 2388999999999999999999999999988887776654
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.7e-20 Score=175.37 Aligned_cols=201 Identities=13% Similarity=0.095 Sum_probs=136.4
Q ss_pred ccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCc-----ccceeeecCCC------ccccccCCeeEEecChHHHHHH
Q 015825 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM-----FGFSVSHTTRA------PRAMEKDGVHYHFTERSVMEKA 193 (399)
Q Consensus 125 s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~-----~g~~i~~ttr~------~~~~~~~~i~yvfq~~~lf~~~ 193 (399)
+.+....+|++++|+||||||||||+++|+|++++. .| .+...... .......+++|+||++.+|. +
T Consensus 25 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~-~ 102 (254)
T PRK14273 25 NINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEG-NVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFL-M 102 (254)
T ss_pred ceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCce-EEEECCEecccccccHHHHhhceEEEeecccccc-C
Confidence 334455699999999999999999999999998863 67 44432111 11112346899999976663 3
Q ss_pred HhhhhhHHHHHHhccccCC-cHH----HHHHHHHc-CCc----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHH
Q 015825 194 IKDGKFLEFASVHGNLYGT-SVE----AVEAVADA-GKR----CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERL 263 (399)
Q Consensus 194 ~~~~~~~E~~~~~~~~~g~-~~~----~i~~~~~~-g~~----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl 263 (399)
++.+++.+....++. ... .+...++. +.. ...+-.+..+....+++...+.+++.+|++++||||+
T Consensus 103 ----tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt 178 (254)
T PRK14273 103 ----SIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPT 178 (254)
T ss_pred ----cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 677777654322221 111 12222221 110 0001111112222345566667999999999999999
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 264 RARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 264 ~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
+++|+.+++.+.+.|.++.+ ..++|+++|+++++...+++++.+.+|.++..+++.++...|.+....
T Consensus 179 ~~LD~~~~~~l~~~l~~~~~---------~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~ 246 (254)
T PRK14273 179 SALDPISTGKIEELIINLKE---------SYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFNPKNTKTE 246 (254)
T ss_pred cccCHHHHHHHHHHHHHHhc---------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCChHHH
Confidence 99999999999999988632 138899999999999999999999999999888888777777655443
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.3e-20 Score=174.07 Aligned_cols=200 Identities=14% Similarity=0.040 Sum_probs=136.5
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-----cccceeeecCCC----ccccccCCeeEEecChHHHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRA----PRAMEKDGVHYHFTERSVMEK 192 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-----~~g~~i~~ttr~----~~~~~~~~i~yvfq~~~lf~~ 192 (399)
+..+.++...+|++++|+||||||||||+++|+|+.++ ..| .+...... ........++|+||++.+++.
T Consensus 18 ~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~ 96 (250)
T PRK14247 18 VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSG-EVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPN 96 (250)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCce-EEEECCEECCcCCHHHHhccEEEEeccCccCCC
Confidence 33344455679999999999999999999999999864 577 55432211 111123468999999766654
Q ss_pred HHhhhhhHHHHHHhccccC--CcHH----HHHHHHHc-CCce----EEecchhhHHHHHcCCcceeEEEEcCCChHHHHH
Q 015825 193 AIKDGKFLEFASVHGNLYG--TSVE----AVEAVADA-GKRC----ILDIDVQGARSVRASPLDAIFIFICPPSMEELEE 261 (399)
Q Consensus 193 ~~~~~~~~E~~~~~~~~~g--~~~~----~i~~~~~~-g~~~----vldld~~g~~~l~~~~~~~~~ili~~P~lllLDE 261 (399)
+ ++.+++.+....++ .... .+.+.++. +... .++..+..+....+++...+.+++.+|++++|||
T Consensus 97 ~----tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDE 172 (250)
T PRK14247 97 L----SIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADE 172 (250)
T ss_pred C----cHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 4 77777765422221 1212 22222222 1110 1122222233334566677779999999999999
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 262 RLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 262 pl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
|++++|+.+++.+.+.|.++.. ..++++++|+++++...+++++.+.+|.+...+++.++...|.
T Consensus 173 P~~~LD~~~~~~l~~~l~~~~~---------~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 237 (250)
T PRK14247 173 PTANLDPENTAKIESLFLELKK---------DMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNPR 237 (250)
T ss_pred CCccCCHHHHHHHHHHHHHHhc---------CCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHcCCc
Confidence 9999999999999999987531 1388999999999989999999999999888887777666554
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=6.4e-20 Score=174.17 Aligned_cols=204 Identities=13% Similarity=0.056 Sum_probs=137.4
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-----cccceeeecCCCc-----c-ccccCCeeEEecChHHHH
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAP-----R-AMEKDGVHYHFTERSVME 191 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-----~~g~~i~~ttr~~-----~-~~~~~~i~yvfq~~~lf~ 191 (399)
..+.+....+|++++|+||||||||||+++|+|+.++ ..| .+....... . ......++|+||++.+|+
T Consensus 20 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (251)
T PRK14270 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEG-EVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFP 98 (251)
T ss_pred eeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCcc-EEEECCEecccccccHHHHHhheEEEecCCCcCC
Confidence 3333445569999999999999999999999999764 567 444322111 1 111345899999987665
Q ss_pred HHHhhhhhHHHHHHhccccCC-cHHH----HHHHHHcC-Cc----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHH
Q 015825 192 KAIKDGKFLEFASVHGNLYGT-SVEA----VEAVADAG-KR----CILDIDVQGARSVRASPLDAIFIFICPPSMEELEE 261 (399)
Q Consensus 192 ~~~~~~~~~E~~~~~~~~~g~-~~~~----i~~~~~~g-~~----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDE 261 (399)
+ ++.+++.+....++. .... +.+.++.. .. ...+..+..+....+++...+.+++.+|++++|||
T Consensus 99 -~----tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 173 (251)
T PRK14270 99 -M----SIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDE 173 (251)
T ss_pred -C----cHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 3 677777654333332 1111 22222211 10 00111111222233455666678889999999999
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhc
Q 015825 262 RLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSK 341 (399)
Q Consensus 262 pl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~ 341 (399)
|++++|+.++..+.+.|+++.+. .++++++|+++++...+++++.+.+|.++..+++.+++..|....+..
T Consensus 174 P~~~LD~~~~~~l~~~L~~~~~~---------~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 244 (251)
T PRK14270 174 PTSALDPISTLKIEDLMVELKKE---------YTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLEPQKKETED 244 (251)
T ss_pred CcccCCHHHHHHHHHHHHHHHhC---------CeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHhcCCCChHHHH
Confidence 99999999999999999886431 278999999999999999999999999988888887777765555443
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.1e-20 Score=180.02 Aligned_cols=205 Identities=13% Similarity=0.037 Sum_probs=137.2
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC----CcccceeeecCCCc-----c---ccccCCeeEEecChHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP----SMFGFSVSHTTRAP-----R---AMEKDGVHYHFTERSV 189 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~----~~~g~~i~~ttr~~-----~---~~~~~~i~yvfq~~~l 189 (399)
+..+.++...+|++++|+|+||||||||+++|+|+.+ +..| .+....... . ....+.++|+||++..
T Consensus 22 ~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~~~i~~v~Q~~~~ 100 (330)
T PRK15093 22 AVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTAD-RMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQS 100 (330)
T ss_pred EEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcce-EEEECCEECCcCCHHHHHHHhCCCEEEEecCcch
Confidence 3344445667999999999999999999999999986 3566 554322111 1 1112368999999753
Q ss_pred --HHHHHhhhhhHHHHHHh--cccc-C---Cc----HHHHHHHHHc-CCc---eEEecchhhHHHHHcCCcceeEEEEcC
Q 015825 190 --MEKAIKDGKFLEFASVH--GNLY-G---TS----VEAVEAVADA-GKR---CILDIDVQGARSVRASPLDAIFIFICP 253 (399)
Q Consensus 190 --f~~~~~~~~~~E~~~~~--~~~~-g---~~----~~~i~~~~~~-g~~---~vldld~~g~~~l~~~~~~~~~ili~~ 253 (399)
++.+ ++.+++... ...+ + .. ...+.+.++. ++. .+++-.+..+....+|+...+.+++.+
T Consensus 101 ~l~p~~----tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSgG~~QRv~iArAL~~~ 176 (330)
T PRK15093 101 CLDPSE----RVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQ 176 (330)
T ss_pred hcCccc----cHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHHHHHHHHHHHCC
Confidence 3333 333333221 1000 1 01 1222233322 111 011112222333356667777899999
Q ss_pred CChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 254 P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
|+++++|||++++|+.++.++.+.|+++.++. ..++|+++||++.+...+++++.+.+|+++..+++.+++..
T Consensus 177 P~llilDEPts~LD~~~~~~i~~lL~~l~~~~-------g~tii~itHdl~~v~~~~dri~vm~~G~ive~g~~~~i~~~ 249 (330)
T PRK15093 177 PRLLIADEPTNAMEPTTQAQIFRLLTRLNQNN-------NTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKELVTT 249 (330)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhc-------CCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999999999999999999999999876542 34899999999999999999999999999998988888877
Q ss_pred Ccchh
Q 015825 334 PADHS 338 (399)
Q Consensus 334 p~~~~ 338 (399)
|....
T Consensus 250 p~~~y 254 (330)
T PRK15093 250 PHHPY 254 (330)
T ss_pred CCCHH
Confidence 75444
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.7e-20 Score=180.61 Aligned_cols=194 Identities=14% Similarity=0.117 Sum_probs=135.2
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecC----CC----------------ccccccCCeeEEecC
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTT----RA----------------PRAMEKDGVHYHFTE 186 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~tt----r~----------------~~~~~~~~i~yvfq~ 186 (399)
+....+|++++|+||||||||||+++|+|++++..| .+.... .. ........++|+||+
T Consensus 46 sl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G-~I~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~ 124 (320)
T PRK13631 46 SYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYG-TIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQF 124 (320)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-eEEECCEEcccccccccccccccccccchHHHHHhcEEEEEEC
Confidence 344568999999999999999999999999999888 554322 11 011123468999998
Q ss_pred hH--HHHHHHhhhhhHHHHHHhccccCCcHHHHHHHHH----c-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHH
Q 015825 187 RS--VMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVAD----A-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEE 258 (399)
Q Consensus 187 ~~--lf~~~~~~~~~~E~~~~~~~~~g~~~~~i~~~~~----~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lll 258 (399)
+. +|. . ++.+++.+.....+.+.....+.+. . +.. ...+-.+..+...++++...+.+|+.+|++++
T Consensus 125 ~~~~l~~-~----tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLL 199 (320)
T PRK13631 125 PEYQLFK-D----TIEKDIMFGPVALGVKKSEAKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILI 199 (320)
T ss_pred chhcccc-c----hHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 63 332 2 6777776543222333333222221 1 111 11111122222334566677779999999999
Q ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 259 LEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 259 LDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
||||++++|+.++..+.+.|.++..+ ..++++++|+++++...+++++.+.+|.++..+++.+++..+
T Consensus 200 LDEPtsgLD~~~~~~l~~~L~~l~~~--------g~TiiivtHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~~ 267 (320)
T PRK13631 200 FDEPTAGLDPKGEHEMMQLILDAKAN--------NKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTPYEIFTDQ 267 (320)
T ss_pred EECCccCCCHHHHHHHHHHHHHHHHC--------CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCH
Confidence 99999999999999999999876432 348999999999999999999999999999888877666544
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.1e-20 Score=174.00 Aligned_cols=200 Identities=15% Similarity=0.048 Sum_probs=135.9
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCc-----ccceeeecCCCc------cccccCCeeEEecChHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM-----FGFSVSHTTRAP------RAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~-----~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf 190 (399)
+..+.+....+|++++|+||||||||||+++|+|++++. .| .+....... .......++|+||++.+|
T Consensus 19 ~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (253)
T PRK14267 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEG-EVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPF 97 (253)
T ss_pred eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCce-EEEECCEEccccccChHHHhhceeEEecCCccC
Confidence 333344555699999999999999999999999998763 67 554322111 111234689999998777
Q ss_pred HHHHhhhhhHHHHHHhccccCC--cHH----HHHHHHHc-CCce----EEecchhhHHHHHcCCcceeEEEEcCCChHHH
Q 015825 191 EKAIKDGKFLEFASVHGNLYGT--SVE----AVEAVADA-GKRC----ILDIDVQGARSVRASPLDAIFIFICPPSMEEL 259 (399)
Q Consensus 191 ~~~~~~~~~~E~~~~~~~~~g~--~~~----~i~~~~~~-g~~~----vldld~~g~~~l~~~~~~~~~ili~~P~lllL 259 (399)
+.+ ++.+++.+....++. ..+ .+.+.++. +... .++-.+..+....+++...+.+++.+|++++|
T Consensus 98 ~~~----tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 173 (253)
T PRK14267 98 PHL----TIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLM 173 (253)
T ss_pred CCC----cHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 654 677776653222221 222 22222222 1100 11112222223345666677799999999999
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 260 EERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 260 DEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
|||++++|+.+.+.+.+.|+++.+ ..++|+++|+++++...+++++.+.+|+++..+++.++...|.
T Consensus 174 DEP~~~LD~~~~~~l~~~l~~~~~---------~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 240 (253)
T PRK14267 174 DEPTANIDPVGTAKIEELLFELKK---------EYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENPE 240 (253)
T ss_pred cCCCccCCHHHHHHHHHHHHHHhh---------CCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCCC
Confidence 999999999999999999988642 1389999999999999999999999999988887776665553
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-19 Score=184.95 Aligned_cols=203 Identities=14% Similarity=0.124 Sum_probs=146.8
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC------ccccccCCeeEEecChH--HHHHHHhhhh
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA------PRAMEKDGVHYHFTERS--VMEKAIKDGK 198 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~------~~~~~~~~i~yvfq~~~--lf~~~~~~~~ 198 (399)
++...+|++++|+|+||||||||.++|+|+.+|..| .+...... .....+..+-++||++. +.+++ +
T Consensus 311 Sf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G-~i~~~g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~----t 385 (539)
T COG1123 311 SFDLREGETLGLVGESGSGKSTLARILAGLLPPSSG-SIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRM----T 385 (539)
T ss_pred eeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEEeCcccccccchhhhhhhheEEEEeCcccccCccc----c
Confidence 355679999999999999999999999999999887 44432211 11122345789999964 34555 6
Q ss_pred hHHHHHHhccccCC-cHHHHHHHHHcCCceEEecch-------hhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 199 FLEFASVHGNLYGT-SVEAVEAVADAGKRCILDIDV-------QGARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 199 ~~E~~~~~~~~~g~-~~~~i~~~~~~g~~~vldld~-------~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
+.+.+...-..++. .....++.+.+ +...+++.+ ..+...++|+...+.+|+..|+++++|||++++|+..
T Consensus 386 V~~~i~epL~~~~~~~~~~~~~rv~~-ll~~VgL~~~~l~ryP~elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsv 464 (539)
T COG1123 386 VGDILAEPLRIHGGGSGAERRARVAE-LLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSV 464 (539)
T ss_pred HHHHHHhHHhhhcccchHHHHHHHHH-HHHHcCCCHHHHhcCchhcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHH
Confidence 66655443322221 12222222221 111122322 2222235667777789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcc
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKV 342 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~ 342 (399)
+.++.+.|..++++++. ++++++||+.-+...++++++|..|+++..++.+.++..|..+.....
T Consensus 465 qa~VlnLl~~lq~e~g~-------t~lfISHDl~vV~~i~drv~vm~~G~iVE~G~~~~v~~~p~h~Ytr~L 529 (539)
T COG1123 465 QAQVLNLLKDLQEELGL-------TYLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKL 529 (539)
T ss_pred HHHHHHHHHHHHHHhCC-------EEEEEeCCHHHHHhhCceEEEEECCeEEEeCCHHHHhcCCCChHHHHH
Confidence 99999999999988754 999999999999999999999999999999988889999987765543
|
|
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.1e-20 Score=170.97 Aligned_cols=198 Identities=12% Similarity=0.043 Sum_probs=132.0
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCC----cccceeeecCCCccc--cccCCeeEEecChH-HH-HHHHhhhhhH
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPS----MFGFSVSHTTRAPRA--MEKDGVHYHFTERS-VM-EKAIKDGKFL 200 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~----~~g~~i~~ttr~~~~--~~~~~i~yvfq~~~-lf-~~~~~~~~~~ 200 (399)
...+|++++|+||||||||||+++|+|+.++ ..| .+.....+... .....++|+||++. .| +.+ ++.
T Consensus 8 ~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G-~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~~~----t~~ 82 (230)
T TIGR02770 8 SLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSG-EILLDGRPLLPLSIRGRHIATIMQNPRTAFNPLF----TMG 82 (230)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCcccc-EEEECCEechhhhhhhheeEEEecCchhhcCccc----CHH
Confidence 3458999999999999999999999999988 788 55543322211 11236899999974 23 222 444
Q ss_pred HHHHHhccccCCcH----HHHHHHHHcC-Cc---eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 201 EFASVHGNLYGTSV----EAVEAVADAG-KR---CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 201 E~~~~~~~~~g~~~----~~i~~~~~~g-~~---~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
+++.+....++... ..+.+.++.. .. ...+..+..+....++++..+.+++.+|++++||||++++|+.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDEPt~~LD~~~~~ 162 (230)
T TIGR02770 83 NHAIETLRSLGKLSKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQA 162 (230)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHH
Confidence 44433211122111 1223333221 11 0111111122223455666777999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchh
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHS 338 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~ 338 (399)
.+.+.+.++.++. ..++++++|+++++...+++++.+.+|.+...+++.+++..|....
T Consensus 163 ~l~~~l~~~~~~~-------~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 221 (230)
T TIGR02770 163 RVLKLLRELRQLF-------GTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHET 221 (230)
T ss_pred HHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHH
Confidence 9999998865421 2388999999999999999999999999988887777766654433
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.5e-19 Score=168.87 Aligned_cols=190 Identities=14% Similarity=0.113 Sum_probs=127.3
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------ccccCCeeEEecChH--HHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERS--VMEK 192 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~~i~yvfq~~~--lf~~ 192 (399)
+..+.+....+|++++|+||||||||||+++|+|++++..| .+........ ......++|+||++. +++.
T Consensus 20 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 98 (228)
T cd03257 20 ALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSG-SIIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPR 98 (228)
T ss_pred eecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEEccccchhhHHHhhccEEEEecCchhhcCCc
Confidence 33444455679999999999999999999999999999888 5543222111 112346899999973 2333
Q ss_pred HHhhhhhHHHHHHhccccCC-cH-HHHH----HHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHH
Q 015825 193 AIKDGKFLEFASVHGNLYGT-SV-EAVE----AVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (399)
Q Consensus 193 ~~~~~~~~E~~~~~~~~~g~-~~-~~i~----~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~ 264 (399)
+ ++.+++.+....++. .. .... +.++. +.. ...+..+..+....+++...+.+++.+|++++||||++
T Consensus 99 ~----tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~ 174 (228)
T cd03257 99 M----TIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTS 174 (228)
T ss_pred C----CHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHHHHhcCCCEEEecCCCC
Confidence 3 666666543222221 11 1111 22222 111 11122222233334566677779999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 265 ARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 265 ~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
++|+.+++.+.+.+.++.++. ..++++++|+++++...+++++.+.+|.+..
T Consensus 175 ~LD~~~~~~l~~~l~~~~~~~-------~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~ 226 (228)
T cd03257 175 ALDVSVQAQILDLLKKLQEEL-------GLTLLFITHDLGVVAKIADRVAVMYAGKIVE 226 (228)
T ss_pred CCCHHHHHHHHHHHHHHHHHc-------CCEEEEEeCCHHHHHHhcCeEEEEeCCEEEe
Confidence 999999999999999875431 2388999999999988899999999887654
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1e-19 Score=172.95 Aligned_cols=203 Identities=13% Similarity=0.084 Sum_probs=135.8
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC-----CcccceeeecCCCcc------ccccCCeeEEecChHHHH
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRAPR------AMEKDGVHYHFTERSVME 191 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~-----~~~g~~i~~ttr~~~------~~~~~~i~yvfq~~~lf~ 191 (399)
....+....+|++++|+||||||||||+++|+|+.. +..| .+........ ......++|+||++.+|+
T Consensus 22 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~ 100 (253)
T PRK14242 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEG-EILLDGENIYDPHVDVVELRRRVGMVFQKPNPFP 100 (253)
T ss_pred ecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCce-EEEECCEEccccccCHHHHhhcEEEEecCCCCCc
Confidence 333445556999999999999999999999999864 4567 5543221110 111346899999976664
Q ss_pred HHHhhhhhHHHHHHhccccCC-cH----HHHHHHHHc-CCce----EEecchhhHHHHHcCCcceeEEEEcCCChHHHHH
Q 015825 192 KAIKDGKFLEFASVHGNLYGT-SV----EAVEAVADA-GKRC----ILDIDVQGARSVRASPLDAIFIFICPPSMEELEE 261 (399)
Q Consensus 192 ~~~~~~~~~E~~~~~~~~~g~-~~----~~i~~~~~~-g~~~----vldld~~g~~~l~~~~~~~~~ili~~P~lllLDE 261 (399)
. ++.+++.+....++. .. +.+...++. +... .++-.+..+....+++...+.+++.+|++++|||
T Consensus 101 -~----tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~llllDE 175 (253)
T PRK14242 101 -K----SIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDE 175 (253)
T ss_pred -C----cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 2 566776554222221 11 122222222 1100 0111111222234556667779999999999999
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 262 RLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 262 pl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
|++++|+.+++.+.+.|+++.. ..++++++|+++++...+++++.+.+|.++..+++.+++..|....+.
T Consensus 176 Pt~~LD~~~~~~l~~~l~~~~~---------~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~ 245 (253)
T PRK14242 176 PASALDPIATQKIEELIHELKA---------RYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTRPREKQTE 245 (253)
T ss_pred CcccCCHHHHHHHHHHHHHHhc---------CCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCCchHHH
Confidence 9999999999999999987632 138899999999999999999999999998888877777666554443
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.1e-19 Score=173.42 Aligned_cols=199 Identities=17% Similarity=0.092 Sum_probs=133.8
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
+....+....+|++++|+||||||||||+++|+|+.++..| .+....... .......++|+||++.+++.+
T Consensus 17 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~---- 91 (258)
T PRK13548 17 LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSG-EVRLNGRPLADWSPAELARRRAVLPQHSSLSFPF---- 91 (258)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-EEEECCEEcccCCHHHhhhheEEEccCCcCCCCC----
Confidence 33334455669999999999999999999999999999888 554322111 111123589999987665443
Q ss_pred hhHHHHHHhccccCCc----HHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEE------cCCChHHHHHHHHhC
Q 015825 198 KFLEFASVHGNLYGTS----VEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFI------CPPSMEELEERLRAR 266 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~~----~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili------~~P~lllLDEpl~~l 266 (399)
++.+++.+....++.. ...+.+.++. +.....+-.+..+....++++..+.+++ .+|++++||||++++
T Consensus 92 tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p~lllLDEPt~~L 171 (258)
T PRK13548 92 TVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPTSAL 171 (258)
T ss_pred CHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCCcccC
Confidence 6777776543222221 1122222322 1111111112222223455666667888 489999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 267 D~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
|+.+++.+.+.|.++.++. ..++++++|+++++...+++++.+.+|.++..+++.++..
T Consensus 172 D~~~~~~l~~~l~~~~~~~-------~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (258)
T PRK13548 172 DLAHQHHVLRLARQLAHER-------GLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLT 230 (258)
T ss_pred CHHHHHHHHHHHHHHHHhc-------CCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhC
Confidence 9999999999999865221 2388999999999999999999999998887776655544
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-19 Score=169.68 Aligned_cols=187 Identities=19% Similarity=0.146 Sum_probs=125.3
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--------ccccCCeeEEecChHHHHHHH
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--------AMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--------~~~~~~i~yvfq~~~lf~~~~ 194 (399)
..+.+....+|++++|+||||||||||+++|+|++++..| .+........ .....+++|+||++.+++.+
T Consensus 26 l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~l~~~~- 103 (228)
T PRK10584 26 LTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSG-EVSLVGQPLHQMDEEARAKLRAKHVGFVFQSFMLIPTL- 103 (228)
T ss_pred EeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCe-eEEECCEEcccCCHHHHHHHHhheEEEEEcccccCCCc-
Confidence 3334455669999999999999999999999999999888 5543221110 01124589999997766544
Q ss_pred hhhhhHHHHHHhccccCCcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 195 KDGKFLEFASVHGNLYGTSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
++.+++.+....++.... .+.+.++. +....++..+..+....+++...+.+++.+|++++||||++++|+.
T Consensus 104 ---tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Ge~qrl~la~al~~~p~llllDEPt~~LD~~ 180 (228)
T PRK10584 104 ---NALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQ 180 (228)
T ss_pred ---CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHH
Confidence 666776553222222222 22222222 1111111122222333456666777999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeee
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIAT 322 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~ 322 (399)
+.+.+.+.++++..+. ..++++++|+++.+ ..+++++.+.+|.+.
T Consensus 181 ~~~~l~~~l~~~~~~~-------~~tii~~sH~~~~~-~~~d~i~~l~~g~i~ 225 (228)
T PRK10584 181 TGDKIADLLFSLNREH-------GTTLILVTHDLQLA-ARCDRRLRLVNGQLQ 225 (228)
T ss_pred HHHHHHHHHHHHHHhc-------CCEEEEEecCHHHH-HhCCEEEEEECCEEE
Confidence 9999999998875432 23889999999876 558998888888664
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-19 Score=170.92 Aligned_cols=195 Identities=13% Similarity=0.110 Sum_probs=132.9
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----------cccccCCeeEEecChHHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----------RAMEKDGVHYHFTERSVME 191 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----------~~~~~~~i~yvfq~~~lf~ 191 (399)
+..+.+....+|++++|+||||||||||+++|+|..++..| .+....... ......+++|+||++.+|+
T Consensus 17 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 95 (242)
T PRK11124 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSG-TLNIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWP 95 (242)
T ss_pred eEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEecccccccchhhHHHHHhheEEEecCccccC
Confidence 33334455569999999999999999999999999999888 555432211 0111346899999987776
Q ss_pred HHHhhhhhHHHHHHh-ccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHh
Q 015825 192 KAIKDGKFLEFASVH-GNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRA 265 (399)
Q Consensus 192 ~~~~~~~~~E~~~~~-~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~ 265 (399)
.+ ++.+++.+. ...++..... +.+.++. +....++..+..+....+++...+.+++.+|++++||||+++
T Consensus 96 ~~----tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEPt~~ 171 (242)
T PRK11124 96 HL----TVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAA 171 (242)
T ss_pred CC----cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCc
Confidence 54 666766431 1122222222 2222222 221112222222233345666777799999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcc
Q 015825 266 RGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPK 329 (399)
Q Consensus 266 lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~ 329 (399)
+|+.+++.+.+.++++.++ ..++++++|+++++...+++++.+.+|.++..+++.+
T Consensus 172 LD~~~~~~l~~~l~~~~~~--------~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 227 (242)
T PRK11124 172 LDPEITAQIVSIIRELAET--------GITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227 (242)
T ss_pred CCHHHHHHHHHHHHHHHHc--------CCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 9999999999998876431 2388999999999988899999999998887665443
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.1e-20 Score=176.60 Aligned_cols=194 Identities=13% Similarity=0.066 Sum_probs=133.7
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcc---cceeeecCCCcc----ccccCCeeEEecChH-HHHHHHhhhh
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMF---GFSVSHTTRAPR----AMEKDGVHYHFTERS-VMEKAIKDGK 198 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~---g~~i~~ttr~~~----~~~~~~i~yvfq~~~-lf~~~~~~~~ 198 (399)
+....+|++++|+||||||||||+++|+|++++.. | .+........ ......++|+||++. .+... +
T Consensus 27 ~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G-~i~i~g~~~~~~~~~~~~~~ig~v~q~~~~~~~~~----t 101 (282)
T PRK13640 27 SFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNS-KITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGA----T 101 (282)
T ss_pred EEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCc-EEEECCEECCcCCHHHHHhheEEEEECHHHhhccC----C
Confidence 34556899999999999999999999999998876 6 5543222111 111345899999974 34443 7
Q ss_pred hHHHHHHhccccCCcHHHH----HHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 199 FLEFASVHGNLYGTSVEAV----EAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~i----~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
+.+++.+....++...+.. .+.++. ++...++..+..+....+++...+.+++.+|++++||||++++|+.++..
T Consensus 102 v~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~G~~qrv~laral~~~P~llllDEPt~gLD~~~~~~ 181 (282)
T PRK13640 102 VGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQ 181 (282)
T ss_pred HHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHH
Confidence 7787765433344444332 222222 11111222222223334556667779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+.+.|.++.++. ..++++++|+++.+ ..+++++.+.+|+++..+++.+++..
T Consensus 182 l~~~l~~l~~~~-------g~tvli~tH~~~~~-~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (282)
T PRK13640 182 ILKLIRKLKKKN-------NLTVISITHDIDEA-NMADQVLVLDDGKLLAQGSPVEIFSK 233 (282)
T ss_pred HHHHHHHHHHhc-------CCEEEEEecCHHHH-HhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999998865421 33889999999988 47999999999999888876666544
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-19 Score=167.79 Aligned_cols=183 Identities=16% Similarity=0.122 Sum_probs=123.6
Q ss_pred ccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc------cccccCCeeEEecChHHHHHHHhhhh
Q 015825 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP------RAMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 125 s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
+.++...+|++++|+||||||||||+++|+|++++..| .+....+.. .......++|+||++.+|+.+ +
T Consensus 18 ~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~----t 92 (213)
T cd03262 18 GIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSG-TIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHL----T 92 (213)
T ss_pred CceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECCccchhHHHHHhcceEEecccccCCCC----c
Confidence 33445569999999999999999999999999999888 554322211 111234689999998766544 6
Q ss_pred hHHHHHHhcc-ccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 199 FLEFASVHGN-LYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 199 ~~E~~~~~~~-~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
+.+++.+... .++...+. +.+.++. +....++..+..+....+++...+.+++.+|++++||||++++|+.+++
T Consensus 93 ~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~~LD~~~~~ 172 (213)
T cd03262 93 VLENITLAPIKVKGMSKAEAEERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPELVG 172 (213)
T ss_pred HHHHHHhHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhhCccccCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHH
Confidence 6777655321 12222222 2222221 1111111111122223455566677999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCe
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSI 320 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~ 320 (399)
.+.+.++++.++ ..++++++|+++++...+++++.+.+|.
T Consensus 173 ~l~~~l~~~~~~--------~~tvi~~sh~~~~~~~~~d~i~~l~~g~ 212 (213)
T cd03262 173 EVLDVMKDLAEE--------GMTMVVVTHEMGFAREVADRVIFMDDGR 212 (213)
T ss_pred HHHHHHHHHHHc--------CCEEEEEeCCHHHHHHhCCEEEEEeCCc
Confidence 999999886532 2378899999999988899988887664
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-19 Score=173.71 Aligned_cols=204 Identities=15% Similarity=0.098 Sum_probs=140.2
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-----cccceeeecCCC----c--c--ccccCCeeEEecChHH--HH
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRA----P--R--AMEKDGVHYHFTERSV--ME 191 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-----~~g~~i~~ttr~----~--~--~~~~~~i~yvfq~~~l--f~ 191 (399)
++...+|++++|+|.|||||||+.+.|+++++. ..| .+....+. . + ...-+.++|+||++.. -|
T Consensus 25 s~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G-~i~f~g~~l~~l~~~~~~~iRG~~I~mIfQ~p~~sLnP 103 (316)
T COG0444 25 SFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGG-EILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNP 103 (316)
T ss_pred eEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeee-EEEECCcccccCCHHHHHhhcCceEEEEEcCchhhcCC
Confidence 355679999999999999999999999999973 334 44432221 1 1 1223468999999632 23
Q ss_pred HHHhhhhhHHHHHHhccccCCcHHHHHHHHHcCCceEEecc---------hhhHHHHHcCCcceeEEEEcCCChHHHHHH
Q 015825 192 KAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDID---------VQGARSVRASPLDAIFIFICPPSMEELEER 262 (399)
Q Consensus 192 ~~~~~~~~~E~~~~~~~~~g~~~~~i~~~~~~g~~~vldld---------~~g~~~l~~~~~~~~~ili~~P~lllLDEp 262 (399)
-+.-..++.|.+..+.... .+++..+.+.+.+ ..+.+. |..+....+|+...+.+++++|++++.|||
T Consensus 104 v~~Ig~Qi~E~l~~h~~~~--~~~ea~~~a~~~L-~~Vgi~~~~~~~~~YPhelSGGMrQRV~IAmala~~P~LlIADEP 180 (316)
T COG0444 104 VMTIGDQIAEVLRLHGKGL--SKKEAKERAIELL-ELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIADEP 180 (316)
T ss_pred hhhHHHHHHHHHHHhhcch--hhHHHHHHHHHHH-HHcCCCCHHHHHhhCCcccCCcHHHHHHHHHHHhCCCCEEEeCCC
Confidence 2222235666655432211 2222222111111 011121 111111234555666799999999999999
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhc
Q 015825 263 LRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSK 341 (399)
Q Consensus 263 l~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~ 341 (399)
|++||...+.++.+.|++++++. ..+++++|||+.-+.+.+|++++|..|+++..++..+++..|.+.....
T Consensus 181 TTALDvt~QaqIl~Ll~~l~~e~-------~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~~~~i~~~P~HPYT~~ 252 (316)
T COG0444 181 TTALDVTVQAQILDLLKELQREK-------GTALILITHDLGVVAEIADRVAVMYAGRIVEEGPVEEIFKNPKHPYTRG 252 (316)
T ss_pred cchhhHHHHHHHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCCHHHHhcCCCChHHHH
Confidence 99999999999999999988754 3489999999999999999999999999999999999999998776554
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-19 Score=175.18 Aligned_cols=198 Identities=13% Similarity=0.046 Sum_probs=134.6
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----cccccCCeeEEecChHHH-HHHHh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSVM-EKAIK 195 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~lf-~~~~~ 195 (399)
+..+.+....+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||++..+ ...
T Consensus 25 vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G-~i~i~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~-- 101 (280)
T PRK13633 25 ALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEG-KVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVAT-- 101 (280)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEeccccccHHHHhhheEEEecChhhhhccc--
Confidence 33334455569999999999999999999999999999888 554322111 111234689999987422 112
Q ss_pred hhhhHHHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 196 DGKFLEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 196 ~~~~~E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
++.+++.+....++.+... +.+.++. +....++-.+..+....+++...+.+++.+|++++||||++++|+.+
T Consensus 102 --~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~ 179 (280)
T PRK13633 102 --IVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSG 179 (280)
T ss_pred --cHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 4566665543333333322 2222222 22112222222223334556667779999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
++.+.+.++++.++. ..++++++|+++++.. +++++.+.+|.+...+++.++..
T Consensus 180 ~~~l~~~l~~l~~~~-------g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g~~~~~~~ 233 (280)
T PRK13633 180 RREVVNTIKELNKKY-------GITIILITHYMEEAVE-ADRIIVMDSGKVVMEGTPKEIFK 233 (280)
T ss_pred HHHHHHHHHHHHHhc-------CCEEEEEecChHHHhc-CCEEEEEECCEEEEecCHHHHhc
Confidence 999999999875431 3488999999999865 99999999999888787666554
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.8e-20 Score=174.58 Aligned_cols=203 Identities=13% Similarity=0.067 Sum_probs=135.4
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC-----CcccceeeecCCCc------cccccCCeeEEecChHHHH
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRAP------RAMEKDGVHYHFTERSVME 191 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~-----~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf~ 191 (399)
..+.+....+|++++|+||||||||||+++|+|+++ +..| .+....... .......++|+||++.+|+
T Consensus 29 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G-~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 107 (260)
T PRK10744 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEG-EILLDGENILTPKQDIALLRAKVGMVFQKPTPFP 107 (260)
T ss_pred eeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcce-EEEECCEEccccccchHHHhcceEEEecCCccCc
Confidence 333445556999999999999999999999999985 3567 454322111 1112346899999976664
Q ss_pred HHHhhhhhHHHHHHhcccc-CCcHHH----HHHHHHcCCc-----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHH
Q 015825 192 KAIKDGKFLEFASVHGNLY-GTSVEA----VEAVADAGKR-----CILDIDVQGARSVRASPLDAIFIFICPPSMEELEE 261 (399)
Q Consensus 192 ~~~~~~~~~E~~~~~~~~~-g~~~~~----i~~~~~~g~~-----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDE 261 (399)
. ++.+++.+....+ +.+.+. +.+.++.... ..++-.+..+....+++...+.+++.+|++++|||
T Consensus 108 -~----tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDE 182 (260)
T PRK10744 108 -M----SIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDE 182 (260)
T ss_pred -C----cHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHHHHHHHCCCCEEEEcC
Confidence 3 6667765532222 222222 2222222110 00011111122223455666779999999999999
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 262 RLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 262 pl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
|++++|+.+++.+.+.|+++.. ..++|+++|+++++...+++++.+.+|.++..+++.++...+....+.
T Consensus 183 Pt~~LD~~~~~~l~~~L~~~~~---------~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~ 252 (260)
T PRK10744 183 PCSALDPISTGRIEELITELKQ---------DYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFTKPAKKQTE 252 (260)
T ss_pred CCccCCHHHHHHHHHHHHHHhc---------CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCcHHHH
Confidence 9999999999999999887631 138899999999998899999999999998888777776666554443
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.6e-19 Score=173.95 Aligned_cols=195 Identities=16% Similarity=0.087 Sum_probs=133.4
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc------cccccCCeeEEecChH-HHHHHHhhhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP------RAMEKDGVHYHFTERS-VMEKAIKDGK 198 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~-lf~~~~~~~~ 198 (399)
.+....+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||++. .+... +
T Consensus 21 vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~----t 95 (275)
T PRK13639 21 INFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSG-EVLIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAP----T 95 (275)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcc-EEEECCEECccccchHHHHHhheEEEeeChhhhhccc----c
Confidence 3445569999999999999999999999999999888 554422211 0112346899999963 22222 6
Q ss_pred hHHHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 199 FLEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
+.+++.+....++..... +.+.++. +..-..+..+..+....+++...+.+++.+|++++||||++++|+.++..
T Consensus 96 v~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD~~~~~~ 175 (275)
T PRK13639 96 VEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGFENKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLDPMGASQ 175 (275)
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence 677765532222222222 2222222 11111222222222234555666779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+.+.+.++.++ ..++++++|+++.+...+++++.+.+|.++..+++.+++..
T Consensus 176 l~~~l~~l~~~--------~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 176 IMKLLYDLNKE--------GITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHHHHHHHC--------CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999886532 23889999999999999999999999998887776666544
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=99.76 E-value=5.7e-20 Score=170.19 Aligned_cols=187 Identities=16% Similarity=0.156 Sum_probs=123.5
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhH
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFL 200 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~ 200 (399)
.+..+.+....+|++++|+||||||||||+++|+|+++|..| .+........ ....+++|+||++.++.. ...++.
T Consensus 13 ~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~-~~~~~i~~v~q~~~~~~~--~~~tv~ 88 (213)
T cd03235 13 PVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSG-SIRVFGKPLE-KERKRIGYVPQRRSIDRD--FPISVR 88 (213)
T ss_pred EeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCC-EEEECCccHH-HHHhheEEeccccccccC--CCCcHH
Confidence 334444455679999999999999999999999999999888 5554332221 123458999998754221 012677
Q ss_pred HHHHHhccccC----Cc-H---HHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 201 EFASVHGNLYG----TS-V---EAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 201 E~~~~~~~~~g----~~-~---~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
|++.+....+. .. . +.+.+.++. +....++..+..+....+++...+.+++.+|++++||||++++|+.++
T Consensus 89 e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~ 168 (213)
T cd03235 89 DVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQ 168 (213)
T ss_pred HHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHH
Confidence 77765422111 11 1 122222222 111111111111222345556667789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
+.+.+.+.++.++ ..++|+++|+++++...+++++.+.++
T Consensus 169 ~~l~~~l~~~~~~--------~~tvi~~sH~~~~~~~~~d~i~~l~~~ 208 (213)
T cd03235 169 EDIYELLRELRRE--------GMTILVVTHDLGLVLEYFDRVLLLNRT 208 (213)
T ss_pred HHHHHHHHHHHhc--------CCEEEEEeCCHHHHHHhcCEEEEEcCc
Confidence 9999999886531 238899999999998889998888765
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-19 Score=174.90 Aligned_cols=193 Identities=11% Similarity=0.043 Sum_probs=129.4
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc------ccccCCeeEEecChHHH-HHHHhhhhhH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR------AMEKDGVHYHFTERSVM-EKAIKDGKFL 200 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~------~~~~~~i~yvfq~~~lf-~~~~~~~~~~ 200 (399)
....+|++++|+||||||||||+++|+|++++..| .+........ ......++|+||++..+ ... ++.
T Consensus 22 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~~~----~~~ 96 (271)
T PRK13638 22 LDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKG-AVLWQGKPLDYSKRGLLALRQQVATVFQDPEQQIFYT----DID 96 (271)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCcc-EEEECCEEcccccCCHHHHHhheEEEeeChhhccccc----cHH
Confidence 44568999999999999999999999999999888 5543222110 11124589999986532 111 344
Q ss_pred HHHHHhccccCCcHHHH----HHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHH
Q 015825 201 EFASVHGNLYGTSVEAV----EAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQIL 275 (399)
Q Consensus 201 E~~~~~~~~~g~~~~~i----~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~ 275 (399)
+++.+....++...... ...++. +.....+-.+..+....+++...+.+++.+|++++||||++++|+.++..+.
T Consensus 97 ~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~lllLDEPt~~LD~~~~~~l~ 176 (271)
T PRK13638 97 SDIAFSLRNLGVPEAEITRRVDEALTLVDAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMI 176 (271)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhHhcCCchhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 55544322233222222 222221 1111111111222223455666777999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 276 KRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 276 ~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+.|.++.++ ..++++++|+++++...+++++.+.+|.++..+++.+++..
T Consensus 177 ~~l~~~~~~--------g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 177 AIIRRIVAQ--------GNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHHHHC--------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999886532 23889999999999989999999999998887776655443
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.1e-19 Score=174.57 Aligned_cols=196 Identities=13% Similarity=0.065 Sum_probs=131.8
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChH-HHHHHHhhhhhH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERS-VMEKAIKDGKFL 200 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~-lf~~~~~~~~~~ 200 (399)
.+....+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||++. .|+.. ++.
T Consensus 28 isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~~----~v~ 102 (269)
T PRK13648 28 VSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSG-EIFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGS----IVK 102 (269)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEECCcCCHHHHHhheeEEEeChHHhcccc----cHH
Confidence 3345569999999999999999999999999999888 555432221 1112345899999974 34332 444
Q ss_pred HHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHH
Q 015825 201 EFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQIL 275 (399)
Q Consensus 201 E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~ 275 (399)
++..+....++..... +.+.++. +....++..+..+....+++...+.+++.+|++++||||++++|+.+++.+.
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~ 182 (269)
T PRK13648 103 YDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLL 182 (269)
T ss_pred HHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 5554432222222222 2222222 1111122122222333455666777999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 276 KRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 276 ~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
+.++++.++. ..++++++|+++++.. +++++.+.+|.+...+++.++...+
T Consensus 183 ~~L~~~~~~~-------~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g~~~~~~~~~ 233 (269)
T PRK13648 183 DLVRKVKSEH-------NITIISITHDLSEAME-ADHVIVMNKGTVYKEGTPTEIFDHA 233 (269)
T ss_pred HHHHHHHHhc-------CCEEEEEecCchHHhc-CCEEEEEECCEEEEecCHHHHhcCH
Confidence 9998865321 2388999999998875 9999999999998887766665543
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-19 Score=193.00 Aligned_cols=205 Identities=10% Similarity=0.006 Sum_probs=142.8
Q ss_pred eccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----c--ccccCCeeEEecCh--HHHHHHH
Q 015825 124 WSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----R--AMEKDGVHYHFTER--SVMEKAI 194 (399)
Q Consensus 124 ~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~--~~~~~~i~yvfq~~--~lf~~~~ 194 (399)
.+.++...+|++++|+||||||||||+++|+|+.++..| .+....... . ......++|+||++ .+++.+
T Consensus 341 ~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G-~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~- 418 (623)
T PRK10261 341 EKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGG-EIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQ- 418 (623)
T ss_pred eeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCc-EEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCC-
Confidence 334455679999999999999999999999999999888 554422111 0 11134689999986 345544
Q ss_pred hhhhhHHHHHHhccccCC-cHH----HHHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCC
Q 015825 195 KDGKFLEFASVHGNLYGT-SVE----AVEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARG 267 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g~-~~~----~i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD 267 (399)
++.+++.+....++. ... .+.+.++. +.. ...+..+..+....+|++..+.+++.+|++++||||++++|
T Consensus 419 ---tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD 495 (623)
T PRK10261 419 ---TVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALD 495 (623)
T ss_pred ---CHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 566665543222221 121 22223322 110 11111222233345667777789999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 268 TETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 268 ~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
+.++.++.+.|+++.++. ..++|+++||++.+...+++++.+.+|+++..+++.+++..|......
T Consensus 496 ~~~~~~i~~ll~~l~~~~-------g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g~~~~i~~~p~~~~~~ 561 (623)
T PRK10261 496 VSIRGQIINLLLDLQRDF-------GIAYLFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTR 561 (623)
T ss_pred HHHHHHHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcCCCCHHHH
Confidence 999999999999876542 238999999999999999999999999999888888888777654433
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=9.6e-20 Score=174.46 Aligned_cols=200 Identities=15% Similarity=0.068 Sum_probs=134.1
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhh
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKD 196 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~ 196 (399)
.+..+.+....+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||++.+++..
T Consensus 21 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~--- 96 (265)
T PRK10253 21 TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHG-HVWLDGEHIQHYASKEVARRIGLLAQNATTPGDI--- 96 (265)
T ss_pred EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCc-EEEECCEEhhhCCHHHHhhheEEeeccCcCCCCC---
Confidence 344444455679999999999999999999999999999888 554322111 111123589999997666543
Q ss_pred hhhHHHHHHhcccc-----CCcH---HHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCC
Q 015825 197 GKFLEFASVHGNLY-----GTSV---EAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARG 267 (399)
Q Consensus 197 ~~~~E~~~~~~~~~-----g~~~---~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD 267 (399)
++.+++.+....+ .... ..+.+.++. +.....+-.+..+....+++...+.+++.+|++++||||++++|
T Consensus 97 -tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDEPt~gLD 175 (265)
T PRK10253 97 -TVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLD 175 (265)
T ss_pred -cHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCCEEEEeCccccCC
Confidence 6666665431100 0111 122222222 11111111111222234455666779999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 268 TETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 268 ~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+.+++.+.+.|.++.++. ..++++++|+++++...+++++.+.+|.++..+++.++..
T Consensus 176 ~~~~~~l~~~L~~l~~~~-------~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 176 ISHQIDLLELLSELNREK-------GYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred HHHHHHHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 999999999998865321 2388999999999999999999999999887777665543
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-19 Score=174.58 Aligned_cols=192 Identities=13% Similarity=0.109 Sum_probs=131.7
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--------ccccCCeeEEecChH--HHHHHHhh
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--------AMEKDGVHYHFTERS--VMEKAIKD 196 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--------~~~~~~i~yvfq~~~--lf~~~~~~ 196 (399)
+....+|++++|+||||||||||+++|+|+++|..| .+........ ......++|+||++. ++. .
T Consensus 27 s~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~~~~i~~~~q~~~~~~~~-~--- 101 (280)
T PRK13649 27 NLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG-SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFE-E--- 101 (280)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEccccccccCHHHHHhheEEEeeChhhhhcc-c---
Confidence 344568999999999999999999999999999888 5543221110 111345899999862 332 2
Q ss_pred hhhHHHHHHhccccCCcHHHHH----HHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 197 GKFLEFASVHGNLYGTSVEAVE----AVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 197 ~~~~E~~~~~~~~~g~~~~~i~----~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
++.+++.+....++....... +.++. +.. ...+..+..+....+++...+.+++.+|++++||||++++|+.+
T Consensus 102 -tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~ 180 (280)
T PRK13649 102 -TVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKG 180 (280)
T ss_pred -cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHH
Confidence 677777654333333332222 22222 221 11121122222334566677779999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
++.+.+.|.++.++ ..++++++|+++++...+++++.+.+|.+...+++.++..
T Consensus 181 ~~~l~~~l~~~~~~--------~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (280)
T PRK13649 181 RKELMTLFKKLHQS--------GMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234 (280)
T ss_pred HHHHHHHHHHHHHC--------CCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999876431 2388999999999998999999999998887776655544
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.9e-20 Score=169.40 Aligned_cols=186 Identities=15% Similarity=0.094 Sum_probs=125.3
Q ss_pred ccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--------cccccCCeeEEecChHHHHHHHhh
Q 015825 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--------RAMEKDGVHYHFTERSVMEKAIKD 196 (399)
Q Consensus 125 s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--------~~~~~~~i~yvfq~~~lf~~~~~~ 196 (399)
+.+....+ ++++|+||||||||||+++|+|++++..| .+....... .......++|+||++.+|+.+
T Consensus 16 ~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~--- 90 (214)
T cd03297 16 KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGG-TIVLNGTVLFDSRKKINLPPQQRKIGLVFQQYALFPHL--- 90 (214)
T ss_pred CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEecccccchhhhhhHhhcEEEEecCCccCCCC---
Confidence 44455568 99999999999999999999999999888 444322111 111134689999997766544
Q ss_pred hhhHHHHHHhccccCC--cHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 197 GKFLEFASVHGNLYGT--SVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 197 ~~~~E~~~~~~~~~g~--~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
++.+++.+....+.. ....+.+.++. +.....+..+..+....+++...+.+++.+|++++||||++++|+.+++.
T Consensus 91 -t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~ 169 (214)
T cd03297 91 -NVRENLAFGLKRKRNREDRISVDELLDLLGLDHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQ 169 (214)
T ss_pred -CHHHHHHHHHhhCCHHHHHHHHHHHHHHcCCHhHhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHH
Confidence 666776553222210 11122222222 11111111111222234556667779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
+.+.+.++.++. ..++++++|+++++...+++++.+.+|.++.
T Consensus 170 l~~~l~~~~~~~-------~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 212 (214)
T cd03297 170 LLPELKQIKKNL-------NIPVIFVTHDLSEAEYLADRIVVMEDGRLQY 212 (214)
T ss_pred HHHHHHHHHHHc-------CcEEEEEecCHHHHHHhcCEEEEEECCEEEe
Confidence 999998875431 2388999999999988899999998887654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.9e-19 Score=174.58 Aligned_cols=196 Identities=9% Similarity=0.027 Sum_probs=132.4
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC---------ccccccCCeeEEecChH--HHHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA---------PRAMEKDGVHYHFTERS--VMEKAI 194 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~---------~~~~~~~~i~yvfq~~~--lf~~~~ 194 (399)
.+....+|++++|+||||||||||+++|+|++++..| .+...... ........++|+||++. ++. .
T Consensus 30 is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-~- 106 (289)
T PRK13645 30 TSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETG-QTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQ-E- 106 (289)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEEccccccccccHHHHhccEEEEEeCcchhhhh-h-
Confidence 3344568999999999999999999999999999888 55432211 11112346899999863 232 2
Q ss_pred hhhhhHHHHHHhccccCCcHHHH----HHHHHc-CC-ceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCC
Q 015825 195 KDGKFLEFASVHGNLYGTSVEAV----EAVADA-GK-RCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGT 268 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g~~~~~i----~~~~~~-g~-~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~ 268 (399)
++.+++.+....++...... ...++. ++ ....+..+..+....+++...+.+++.+|++++||||++++|+
T Consensus 107 ---tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~ 183 (289)
T PRK13645 107 ---TIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDP 183 (289)
T ss_pred ---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCH
Confidence 56676665432223222222 222221 11 0011111222222345666677799999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 269 ETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 269 ~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
.+++.+.+.|.++.++. ..++++++|+++++...+++++.+.+|.++..+++.+++..+
T Consensus 184 ~~~~~l~~~l~~~~~~~-------~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 242 (289)
T PRK13645 184 KGEEDFINLFERLNKEY-------KKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSNQ 242 (289)
T ss_pred HHHHHHHHHHHHHHHhc-------CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCH
Confidence 99999999998865421 238899999999999999999999999988777666555443
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=7.3e-20 Score=172.27 Aligned_cols=197 Identities=14% Similarity=0.086 Sum_probs=132.1
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-----ccccCCeeEEecChHHHHHHHhhh
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-----AMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-----~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
....+....+|++++|+||||||||||+++|+|.+++..| .+........ ......++|+||+..+|+..
T Consensus 21 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~---- 95 (237)
T PRK11614 21 LHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSG-RIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRM---- 95 (237)
T ss_pred eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCc-eEEECCEecCCCCHHHHHHhCEEEeccCcccCCCC----
Confidence 3333445569999999999999999999999999999888 5543322111 11234689999997766544
Q ss_pred hhHHHHHHhccccCCc--HHHHHHHHHcC--CceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 198 KFLEFASVHGNLYGTS--VEAVEAVADAG--KRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~~--~~~i~~~~~~g--~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
++.+++.+........ ...+...++.. .....+-.+..+....+++...+.+++.+|++++||||++++|+.+++.
T Consensus 96 tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~illlDEPt~~LD~~~~~~ 175 (237)
T PRK11614 96 TVEENLAMGGFFAERDQFQERIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQ 175 (237)
T ss_pred cHHHHHHHhhhccChhHHHHHHHHHHHHHHHHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCccccCCHHHHHH
Confidence 6677765532211110 11111111110 0000000111112223455666678999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+.+.++++.++ ..++++++|+++++.+.+++++.+.+|.++..++++++..
T Consensus 176 l~~~l~~~~~~--------~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (237)
T PRK11614 176 IFDTIEQLREQ--------GMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLA 226 (237)
T ss_pred HHHHHHHHHHC--------CCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhc
Confidence 99998876432 2488999999999999999999999999988887766654
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-19 Score=172.34 Aligned_cols=201 Identities=14% Similarity=0.092 Sum_probs=133.7
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC-----CcccceeeecCCCc------cccccCCeeEEecChHH
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRAP------RAMEKDGVHYHFTERSV 189 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~-----~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~l 189 (399)
.+..+.++...+|++++|+||||||||||+++|+|+++ +..| .+....... .......++|+||++.+
T Consensus 27 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G-~v~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l 105 (269)
T PRK14259 27 EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKG-RVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNP 105 (269)
T ss_pred EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCce-EEEECCEEcccccCCHHHHhhceEEEccCCcc
Confidence 34444445567999999999999999999999999976 4667 454322111 11123458999999876
Q ss_pred HHHHHhhhhhHHHHHHhccccCCcH---HHHHHHHHcCCc-----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHH
Q 015825 190 MEKAIKDGKFLEFASVHGNLYGTSV---EAVEAVADAGKR-----CILDIDVQGARSVRASPLDAIFIFICPPSMEELEE 261 (399)
Q Consensus 190 f~~~~~~~~~~E~~~~~~~~~g~~~---~~i~~~~~~g~~-----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDE 261 (399)
|+ . ++.+++.+....++... +.+.+.++.... ..++-.+..+....++++..+.+++.+|++++|||
T Consensus 106 ~~-~----tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDE 180 (269)
T PRK14259 106 FP-K----SIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIARTIAIEPEVILMDE 180 (269)
T ss_pred ch-h----hHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 65 3 66777765433322221 222222222110 01111111222234556667779999999999999
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccC-----------CeeeecCCCccc
Q 015825 262 RLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDG-----------SIATNHQTSPKG 330 (399)
Q Consensus 262 pl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~-----------~~~~~~~~~~~~ 330 (399)
|++++|+.+++.+.+.|.++.. ..++|+++|+++++...+++++.+.+ |+++..+++.++
T Consensus 181 Pt~gLD~~~~~~l~~~l~~~~~---------~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~~~~ 251 (269)
T PRK14259 181 PCSALDPISTLKIEETMHELKK---------NFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNETKKI 251 (269)
T ss_pred CCccCCHHHHHHHHHHHHHHhc---------CCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEeCCHHHH
Confidence 9999999999999998887532 13889999999999999999999885 456666777777
Q ss_pred cCCCcc
Q 015825 331 IDLPAD 336 (399)
Q Consensus 331 ~~~p~~ 336 (399)
+..|..
T Consensus 252 ~~~~~~ 257 (269)
T PRK14259 252 FNSPKQ 257 (269)
T ss_pred HhCcCC
Confidence 666543
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.4e-19 Score=169.89 Aligned_cols=195 Identities=15% Similarity=0.147 Sum_probs=132.6
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--ccccCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
....+|++++|+||||||||||+++|+|++++..| .+........ ......++|+||++.+|+.+ ++.+++.+
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~i~~~~q~~~~~~~~----tv~e~l~~ 94 (232)
T PRK10771 20 LTVERGERVAILGPSGAGKSTLLNLIAGFLTPASG-SLTLNGQDHTTTPPSRRPVSMLFQENNLFSHL----TVAQNIGL 94 (232)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCeecCcCChhhccEEEEecccccccCC----cHHHHHhc
Confidence 34458999999999999999999999999999888 5544322111 11124689999998777654 67777755
Q ss_pred hccc-cCCc---HHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHH
Q 015825 206 HGNL-YGTS---VEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRN 280 (399)
Q Consensus 206 ~~~~-~g~~---~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~ 280 (399)
.... .... ...+.+.++. +.....+-.+..+....+++...+.+++.+|++++||||++++|+.+++.+.+.|.+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~ 174 (232)
T PRK10771 95 GLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQ 174 (232)
T ss_pred ccccccCCCHHHHHHHHHHHHHcCcHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 3211 1111 1122222222 111111111111222345556667789999999999999999999999999999988
Q ss_pred HHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 281 AKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 281 ~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
+..+. ..++|+++|+++++...+++++.+.+|++...+++.++...+
T Consensus 175 ~~~~~-------~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~~ 221 (232)
T PRK10771 175 VCQER-------QLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSGK 221 (232)
T ss_pred HHHhc-------CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCh
Confidence 65431 348899999999998889999999999888777666555544
|
|
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.1e-19 Score=155.61 Aligned_cols=199 Identities=14% Similarity=0.122 Sum_probs=143.5
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeee------cCC----CccccccCCeeEEecChHHHHHHHhhh
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSH------TTR----APRAMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~------ttr----~~~~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
..-..|+.++++||||+|||||++.|.=+.-|..| .... ..+ ......+.++|++||.+.+|+++
T Consensus 23 l~~~~getlvllgpsgagkssllr~lnlle~p~sg-~l~ia~~~fd~s~~~~~k~i~~lr~~vgmvfqqy~lwphl---- 97 (242)
T COG4161 23 LDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSG-TLNIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHL---- 97 (242)
T ss_pred ecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCC-eEEecccccccccCccHHHHHHHHHhhhhhhhhhccCchh----
Confidence 33468999999999999999999999988888887 3321 111 11222345689999999999999
Q ss_pred hhHHHHH-HhccccCCcHHHHHHHHHcC-----CceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 198 KFLEFAS-VHGNLYGTSVEAVEAVADAG-----KRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 198 ~~~E~~~-~~~~~~g~~~~~i~~~~~~g-----~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
++.|++- ..-+..|.++++.+....+- +..+.|..|..+...+.++...+.+++..|.++++|||+.++||+-.
T Consensus 98 tv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr~plhlsggqqqrvaiaralmmkpqvllfdeptaaldpeit 177 (242)
T COG4161 98 TVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEIT 177 (242)
T ss_pred HHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhccccccccCceecccchhhhHHHHHHHhcCCcEEeecCcccccCHHHH
Confidence 8888864 33445677776655433221 11122222222233345666677799999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
.++-..++++.. -..|-||++|..+-|.+.+.+++-|.+|.++..|+. .-++.|..+..+
T Consensus 178 aqvv~iikel~~--------tgitqvivthev~va~k~as~vvyme~g~ive~g~a-~~ft~p~te~f~ 237 (242)
T COG4161 178 AQIVSIIKELAE--------TGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA-SCFTEPQTEAFK 237 (242)
T ss_pred HHHHHHHHHHHh--------cCceEEEEEeehhHHHhhhhheEeeecCeeEeecch-hhccCccHHHHH
Confidence 888888887652 255889999999999999999999999999998874 356667655443
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1e-19 Score=173.52 Aligned_cols=202 Identities=12% Similarity=0.083 Sum_probs=134.7
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-----cccceeeecCCCc------cccccCCeeEEecChHHHH
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAP------RAMEKDGVHYHFTERSVME 191 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-----~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf~ 191 (399)
..+.+....+|++++|+||||||||||+++|+|+.++ ..| .+....... .......++|+||+..+|+
T Consensus 20 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G-~I~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 98 (258)
T PRK14241 20 VEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEG-EVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFP 98 (258)
T ss_pred eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcce-EEEECCEeccccccChHHHhcceEEEccccccCC
Confidence 3334455569999999999999999999999999864 477 554322111 1112346899999877665
Q ss_pred HHHhhhhhHHHHHHhccccCC-cHHHHH----HHHHc-CCc----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHH
Q 015825 192 KAIKDGKFLEFASVHGNLYGT-SVEAVE----AVADA-GKR----CILDIDVQGARSVRASPLDAIFIFICPPSMEELEE 261 (399)
Q Consensus 192 ~~~~~~~~~E~~~~~~~~~g~-~~~~i~----~~~~~-g~~----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDE 261 (399)
.+ ++.+++.+....++. ...... +.++. +.. ...+-.+..+....++++..+.+++.+|++++|||
T Consensus 99 ~~----tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDE 174 (258)
T PRK14241 99 TM----SIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDE 174 (258)
T ss_pred CC----cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 54 677777654322222 222222 22211 110 00111111122234556667779999999999999
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc------CCeeeecCCCccccCCCc
Q 015825 262 RLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD------GSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 262 pl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~------~~~~~~~~~~~~~~~~p~ 335 (399)
|++++|+.++..+.+.|.++.+ ..++|+++|+++++...+++++.+. +|+++..+++.+++..|.
T Consensus 175 Pt~~LD~~~~~~l~~~l~~~~~---------~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~~~~~~ 245 (258)
T PRK14241 175 PCSALDPISTLAIEDLINELKQ---------DYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKIFSNPT 245 (258)
T ss_pred CCccCCHHHHHHHHHHHHHHhc---------CCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHHHHhCcC
Confidence 9999999999999999987632 1388999999999999999998886 688888887777766554
Q ss_pred chh
Q 015825 336 DHS 338 (399)
Q Consensus 336 ~~~ 338 (399)
...
T Consensus 246 ~~~ 248 (258)
T PRK14241 246 QKA 248 (258)
T ss_pred cHH
Confidence 433
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.3e-19 Score=170.49 Aligned_cols=205 Identities=13% Similarity=0.076 Sum_probs=137.6
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC--C---cccceeeecCCCc------cccccCCeeEEecChHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP--S---MFGFSVSHTTRAP------RAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~--~---~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf 190 (399)
+..+.+....+|++++|+||||||||||+++|+|+++ + ..| .+....... .......++|+||++.+|
T Consensus 19 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 97 (252)
T PRK14256 19 AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTG-KILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPF 97 (252)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCce-EEEECCEEcccccCChHHhhccEEEEecCCCCC
Confidence 3333445566999999999999999999999999975 3 457 554322111 111234689999997766
Q ss_pred HHHHhhhhhHHHHHHhccccCC-cHH----HHHHHHHc-CCce----EEecchhhHHHHHcCCcceeEEEEcCCChHHHH
Q 015825 191 EKAIKDGKFLEFASVHGNLYGT-SVE----AVEAVADA-GKRC----ILDIDVQGARSVRASPLDAIFIFICPPSMEELE 260 (399)
Q Consensus 191 ~~~~~~~~~~E~~~~~~~~~g~-~~~----~i~~~~~~-g~~~----vldld~~g~~~l~~~~~~~~~ili~~P~lllLD 260 (399)
+.+ ++.+++.+....++. ... .+.+.++. +... .++..+..+....+++...+.+++.+|++++||
T Consensus 98 ~~~----tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllD 173 (252)
T PRK14256 98 PAM----SIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCIARTIAVKPEVILMD 173 (252)
T ss_pred CcC----cHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 654 667776543222221 111 12222222 1100 011111112223455566677899999999999
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 261 ERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 261 Epl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
||++++|+.+++.+.+.|+++.+. .++|+++|+++++...+++++.+.+|.+...+++.+++..|......
T Consensus 174 EP~~gLD~~~~~~l~~~l~~~~~~---------~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 244 (252)
T PRK14256 174 EPASALDPISTLKIEELIEELKEK---------YTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTTPEKKQTE 244 (252)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhC---------CcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCCCcHHHH
Confidence 999999999999999999886421 28899999999999999999999999998888877777776654443
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-19 Score=173.50 Aligned_cols=200 Identities=15% Similarity=0.090 Sum_probs=134.6
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhh
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKD 196 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~ 196 (399)
.+..+.++...+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||+..+++.+
T Consensus 25 ~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~--- 100 (265)
T PRK10575 25 TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEG-EILLDAQPLESWSSKAFARKVAYLPQQLPAAEGM--- 100 (265)
T ss_pred EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCC-EEEECCEehhhCCHHHHhhheEEeccCCCCCCCc---
Confidence 444445556679999999999999999999999999999888 554432111 111124589999987665544
Q ss_pred hhhHHHHHHhccc-c---CC-c---HHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCC
Q 015825 197 GKFLEFASVHGNL-Y---GT-S---VEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARG 267 (399)
Q Consensus 197 ~~~~E~~~~~~~~-~---g~-~---~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD 267 (399)
++.+++.+.... . +. . .+.+...++. +....++..+..+....+++...+.+++.+|++++||||++++|
T Consensus 101 -tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lllLDEPt~~LD 179 (265)
T PRK10575 101 -TVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179 (265)
T ss_pred -cHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 666776553211 1 10 1 1122222222 11111111111222234555666779999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 268 TETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 268 ~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+.+++.+.+.|.++..+. ..++++++|+++++...+++++.+.+|.++..+++.++..
T Consensus 180 ~~~~~~~~~~l~~l~~~~-------~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 180 IAHQVDVLALVHRLSQER-------GLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred HHHHHHHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 999999999999865431 3488999999999999999999999998887776655544
|
|
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-19 Score=188.02 Aligned_cols=197 Identities=12% Similarity=0.079 Sum_probs=137.3
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-----ccccCCeeEEecChHHHHHHHh
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-----AMEKDGVHYHFTERSVMEKAIK 195 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-----~~~~~~i~yvfq~~~lf~~~~~ 195 (399)
.+....++...+|++++|+||||||||||+++|+|+++|..| .+........ .....+++|+||++.+++.+
T Consensus 25 ~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-- 101 (510)
T PRK15439 25 EVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSG-TLEIGGNPCARLTPAKAHQLGIYLVPQEPLLFPNL-- 101 (510)
T ss_pred eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECCCCCHHHHHhCCEEEEeccCccCCCC--
Confidence 334444455679999999999999999999999999999888 5543322111 11123589999998766655
Q ss_pred hhhhHHHHHHhccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHH
Q 015825 196 DGKFLEFASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQI 274 (399)
Q Consensus 196 ~~~~~E~~~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i 274 (399)
++.+++.+.........+.+.+.++. +.....+..+..+....++++..+.+|+.+|++++||||++++|+.+.+.+
T Consensus 102 --tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~aL~~~p~lllLDEPt~~LD~~~~~~l 179 (510)
T PRK15439 102 --SVKENILFGLPKRQASMQKMKQLLAALGCQLDLDSSAGSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERL 179 (510)
T ss_pred --cHHHHhhcccccchHHHHHHHHHHHHcCCCccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHH
Confidence 77777765422111112223333332 221122222333333456677777899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccc
Q 015825 275 LKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKG 330 (399)
Q Consensus 275 ~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~ 330 (399)
.+.|+++.++ ..++|+++|+++++...+++++.+.+|.++..+++.+.
T Consensus 180 ~~~l~~~~~~--------g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (510)
T PRK15439 180 FSRIRELLAQ--------GVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227 (510)
T ss_pred HHHHHHHHHC--------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHc
Confidence 9999886432 23889999999999999999999999988876665544
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.1e-19 Score=168.62 Aligned_cols=186 Identities=16% Similarity=0.075 Sum_probs=127.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcc-
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGN- 208 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~- 208 (399)
..+|++++|+||||||||||+++|+|+.++..| .+........... ...+|+||++.+|+.+ ++.+++.+...
T Consensus 8 i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~-~~~~~v~q~~~l~~~~----tv~e~l~~~~~~ 81 (230)
T TIGR01184 8 IQQGEFISLIGHSGCGKSTLLNLISGLAQPTSG-GVILEGKQITEPG-PDRMVVFQNYSLLPWL----TVRENIALAVDR 81 (230)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECCCCC-hhheEEecCcccCCCC----CHHHHHHHHHHh
Confidence 458999999999999999999999999999888 5544322111110 1147999987766654 67777655311
Q ss_pred -ccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 015825 209 -LYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAK 282 (399)
Q Consensus 209 -~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~ 282 (399)
..+..... +.+.++. +....++..+..+....+++...+.+++.+|++++||||++++|+.++..+.+.|.++.
T Consensus 82 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~ 161 (230)
T TIGR01184 82 VLPDLSKSERRAIVEEHIALVGLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIW 161 (230)
T ss_pred cccCCCHHHHHHHHHHHHHHcCCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHH
Confidence 11222222 2222222 11111111222222334566667779999999999999999999999999999998865
Q ss_pred HHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCc
Q 015825 283 EEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSP 328 (399)
Q Consensus 283 ~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~ 328 (399)
++. ..++++++|+++++...+++++.+.+|.++..+++.
T Consensus 162 ~~~-------~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~ 200 (230)
T TIGR01184 162 EEH-------RVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQIL 200 (230)
T ss_pred Hhc-------CCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCce
Confidence 431 238899999999999999999999999888766543
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2e-19 Score=173.39 Aligned_cols=196 Identities=13% Similarity=0.072 Sum_probs=134.4
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC----ccccccCCeeEEecChH-HHHHHHhhhhhH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTERS-VMEKAIKDGKFL 200 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~~i~yvfq~~~-lf~~~~~~~~~~ 200 (399)
.+....+|++++|+||||||||||+++|+|++++..| .+...... .......+++|+||++. .+... ++.
T Consensus 26 v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~----tv~ 100 (277)
T PRK13642 26 VSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEG-KVKIDGELLTAENVWNLRRKIGMVFQNPDNQFVGA----TVE 100 (277)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCC-EEEECCEECCcCCHHHHhcceEEEEECHHHhhccC----CHH
Confidence 3345569999999999999999999999999999888 55432211 11122346899999974 34433 677
Q ss_pred HHHHHhccccCCcHHHH----HHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHH
Q 015825 201 EFASVHGNLYGTSVEAV----EAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQIL 275 (399)
Q Consensus 201 E~~~~~~~~~g~~~~~i----~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~ 275 (399)
+++.+.....+...... ...++. +.....+-.+..+....+++...+.+++.+|++++||||++++|+.+++.+.
T Consensus 101 eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~llllDEPt~~LD~~~~~~l~ 180 (277)
T PRK13642 101 DDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIM 180 (277)
T ss_pred HHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 77765432223333222 222222 1111111112222223455666777999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 276 KRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 276 ~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
+.+.++.++. ..++++++|+++++. .+++++.+.+|.++..+++.+++..+
T Consensus 181 ~~l~~l~~~~-------g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~g~~~~~~~~~ 231 (277)
T PRK13642 181 RVIHEIKEKY-------QLTVLSITHDLDEAA-SSDRILVMKAGEIIKEAAPSELFATS 231 (277)
T ss_pred HHHHHHHHhc-------CCEEEEEeCCHHHHH-hCCEEEEEECCEEEEeCCHHHHhcCH
Confidence 9998875432 338999999999986 59999999999988877776665443
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.8e-19 Score=171.47 Aligned_cols=199 Identities=12% Similarity=0.088 Sum_probs=133.0
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhh
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKD 196 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~ 196 (399)
.+..+.+....+|++++|+||||||||||+++|+|++++..| .+........ ......++|+||+..+++.+
T Consensus 16 ~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~--- 91 (255)
T PRK11231 16 RILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSG-TVFLGDKPISMLSSRQLARRLALLPQHHLTPEGI--- 91 (255)
T ss_pred EEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCc-EEEECCEEhHHCCHHHHhhheEEecccCCCCCCc---
Confidence 334344455669999999999999999999999999999888 5544322211 11123589999987655443
Q ss_pred hhhHHHHHHhcc----ccCC-c---HHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCC
Q 015825 197 GKFLEFASVHGN----LYGT-S---VEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARG 267 (399)
Q Consensus 197 ~~~~E~~~~~~~----~~g~-~---~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD 267 (399)
++.+++.+... .++. . ...+.+.++. +.....+..+..+....+++...+.+++.+|++++||||++++|
T Consensus 92 -tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD 170 (255)
T PRK11231 92 -TVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD 170 (255)
T ss_pred -cHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCC
Confidence 56666654311 1111 1 1122222222 11111111111222234555667779999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 268 TETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 268 ~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+.+++.+.+.|.++..+ ..++++++|+++++.+.+++++.+.+|.++..+++.++..
T Consensus 171 ~~~~~~l~~~l~~l~~~--------~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 171 INHQVELMRLMRELNTQ--------GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHHHHHHHHHHHHC--------CCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 99999999999876432 2388999999999999999999999998887776655543
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.7e-19 Score=184.39 Aligned_cols=196 Identities=11% Similarity=0.118 Sum_probs=136.1
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----cccccCCeeEEecChHHHHHHHh
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSVMEKAIK 195 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~lf~~~~~ 195 (399)
.+....+....+|++++|+||||||||||+++|+|+++|..| .+....... .......++|+||++.+++.+
T Consensus 18 ~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~-- 94 (501)
T PRK10762 18 KALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAG-SILYLGKEVTFNGPKSSQEAGIGIIHQELNLIPQL-- 94 (501)
T ss_pred EEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEECCCCCHHHHHhCCEEEEEcchhccCCC--
Confidence 333334455668999999999999999999999999999888 554322111 111124589999998776655
Q ss_pred hhhhHHHHHHhcccc---C-CcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhC
Q 015825 196 DGKFLEFASVHGNLY---G-TSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (399)
Q Consensus 196 ~~~~~E~~~~~~~~~---g-~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~l 266 (399)
++.+++.+....+ + .... .+.+.++. +.....+-.+..+....+++...+.+|+.+|++++||||++++
T Consensus 95 --tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~L 172 (501)
T PRK10762 95 --TIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGELSIGEQQMVEIAKVLSFESKVIIMDEPTDAL 172 (501)
T ss_pred --cHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcCCC
Confidence 7778776643221 1 1111 22222222 1111222222233334566777788999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcc
Q 015825 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPK 329 (399)
Q Consensus 267 D~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~ 329 (399)
|+.++..+.+.++++.++ ..++|+++||++++...+++++.+.+|.++..+++.+
T Consensus 173 D~~~~~~l~~~l~~l~~~--------~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 227 (501)
T PRK10762 173 TDTETESLFRVIRELKSQ--------GRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVAD 227 (501)
T ss_pred CHHHHHHHHHHHHHHHHC--------CCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCc
Confidence 999999999999886432 2378999999999999999999999998877665544
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-19 Score=191.21 Aligned_cols=202 Identities=17% Similarity=0.123 Sum_probs=139.1
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCC---------------Ccc---ccccCCeeEE
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTR---------------APR---AMEKDGVHYH 183 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr---------------~~~---~~~~~~i~yv 183 (399)
+..+.++...+|++++|+||||||||||+++|+|++++..| .+..... ... ......++|+
T Consensus 31 ~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G-~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~ig~v 109 (623)
T PRK10261 31 AVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGG-LVQCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMI 109 (623)
T ss_pred EEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCe-EEEECCEEeccccccccccccCCHHHHHHHhCCCEEEE
Confidence 33444455679999999999999999999999999998777 4432110 000 0112358999
Q ss_pred ecCh--HHHHHHHhhhhhHHHHHHhccc-cCCcHHHHH----HHHHc-CCc---eEEecchhhHHHHHcCCcceeEEEEc
Q 015825 184 FTER--SVMEKAIKDGKFLEFASVHGNL-YGTSVEAVE----AVADA-GKR---CILDIDVQGARSVRASPLDAIFIFIC 252 (399)
Q Consensus 184 fq~~--~lf~~~~~~~~~~E~~~~~~~~-~g~~~~~i~----~~~~~-g~~---~vldld~~g~~~l~~~~~~~~~ili~ 252 (399)
||++ .+++.+ ++.+++.+.... .+....... +.++. +.. ..++..+..+....+|++..+.+|+.
T Consensus 110 ~Q~~~~~l~~~~----tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~~LSgGq~QRv~iA~AL~~ 185 (623)
T PRK10261 110 FQEPMTSLNPVF----TVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSC 185 (623)
T ss_pred EeCchhhcCCCC----CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChhhHHhCCCccCCHHHHHHHHHHHHHhC
Confidence 9986 345544 677777654322 133332222 22222 110 01121222233345667777889999
Q ss_pred CCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 253 PPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 253 ~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+|++++||||++++|+.+++++.+.++++.++. ..++|+++||++.+...+++++.+.+|.++..+++.+++.
T Consensus 186 ~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~-------g~tvi~itHdl~~~~~~adri~vl~~G~i~~~g~~~~~~~ 258 (623)
T PRK10261 186 RPAVLIADEPTTALDVTIQAQILQLIKVLQKEM-------SMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFH 258 (623)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhc-------CCEEEEEcCCHHHHHHhCCEEEEeeCCeecccCCHHHhhc
Confidence 999999999999999999999999999876442 2388999999999999999999999999988777777666
Q ss_pred CCc
Q 015825 333 LPA 335 (399)
Q Consensus 333 ~p~ 335 (399)
.|.
T Consensus 259 ~~~ 261 (623)
T PRK10261 259 APQ 261 (623)
T ss_pred CCC
Confidence 554
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-19 Score=165.94 Aligned_cols=186 Identities=16% Similarity=0.118 Sum_probs=126.4
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--ccccCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
....+|++++|+||||||||||+++|+|+.++..| .+........ ......++|+||++.+|+.+ ++.+++.+
T Consensus 19 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~i~~v~q~~~~~~~~----t~~en~~~ 93 (213)
T TIGR01277 19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASG-SIKVNDQSHTGLAPYQRPVSMLFQENNLFAHL----TVRQNIGL 93 (213)
T ss_pred EEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEEcccCChhccceEEEeccCccCCCC----cHHHHHHh
Confidence 44568999999999999999999999999999888 5543221110 11234589999998777654 67777654
Q ss_pred hcc-ccCCc---HHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHH
Q 015825 206 HGN-LYGTS---VEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRN 280 (399)
Q Consensus 206 ~~~-~~g~~---~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~ 280 (399)
... .+... ...+.+.++. +.....+-.+..+....+++...+.+++.+|++++||||++++|..+++.+.+.|.+
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~ 173 (213)
T TIGR01277 94 GLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQ 173 (213)
T ss_pred HhhccCCccHHHHHHHHHHHHHcCcHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHH
Confidence 311 11111 1222222222 111111111122222345556666788999999999999999999999999999998
Q ss_pred HHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecC
Q 015825 281 AKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQ 325 (399)
Q Consensus 281 ~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~ 325 (399)
+.++. ..++++++|+++++...+++++.+.+|++...+
T Consensus 174 ~~~~~-------~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~ 211 (213)
T TIGR01277 174 LCSER-------QRTLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211 (213)
T ss_pred HHHhc-------CCEEEEEeCCHHHHHhhcCeEEEEECCeEEEec
Confidence 75431 248899999999998889999999988776543
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-19 Score=169.65 Aligned_cols=200 Identities=15% Similarity=0.111 Sum_probs=134.7
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC-----CcccceeeecCCCc------cccccCCeeEEecChHHHHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRAP------RAMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~-----~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf~~~~ 194 (399)
.+....+|++++|+||||||||||+++|+|+.+ +..| .+....... ......+++|+||++.+|+ .
T Consensus 23 ~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G-~v~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~- 99 (251)
T PRK14251 23 ISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITG-EIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFP-F- 99 (251)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcce-EEEECCEEcccccchHHHhhccEEEEecCCccCC-C-
Confidence 344556899999999999999999999999986 3567 554322211 1112346899999976663 2
Q ss_pred hhhhhHHHHHHhccccCCc-H----HHHHHHHHc-CCc----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHH
Q 015825 195 KDGKFLEFASVHGNLYGTS-V----EAVEAVADA-GKR----CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g~~-~----~~i~~~~~~-g~~----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~ 264 (399)
++.+++.+....++.. . ..+...++. +.. ..++..+..+....+++...+.+++.+|++++||||++
T Consensus 100 ---tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~laral~~~p~llllDEP~~ 176 (251)
T PRK14251 100 ---SVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTS 176 (251)
T ss_pred ---cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHHHHhcCCCEEEecCCCc
Confidence 6677765432222221 1 122222222 110 00111111222234556666778999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 265 ARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 265 ~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
++|+.+++.+.+.+.++.+ ..++++++|+++++...+++++.+.+|.+...+++.+++..|......
T Consensus 177 ~LD~~~~~~l~~~l~~~~~---------~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 243 (251)
T PRK14251 177 ALDPISSSEIEETLMELKH---------QYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIAPKKQITS 243 (251)
T ss_pred cCCHHHHHHHHHHHHHHHc---------CCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHHhCCCCHHHH
Confidence 9999999999999987632 138899999999999999999999999998888777776666544433
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-19 Score=172.05 Aligned_cols=196 Identities=12% Similarity=0.072 Sum_probs=131.4
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChH-HHHHHHhhhhhH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERS-VMEKAIKDGKFL 200 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~-lf~~~~~~~~~~ 200 (399)
.+....+|++++|+||||||||||+++|+|+.++..| .+....... .......++|+||++. .|..+ ++.
T Consensus 28 isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~I~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~~----tv~ 102 (271)
T PRK13632 28 VSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSG-EIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGA----TVE 102 (271)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEecCcCCHHHHhcceEEEEeCHHHhcCcc----cHH
Confidence 3344568999999999999999999999999999888 554322111 1112345899999974 34443 677
Q ss_pred HHHHHhccccCCcHHHH----HHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHH
Q 015825 201 EFASVHGNLYGTSVEAV----EAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQIL 275 (399)
Q Consensus 201 E~~~~~~~~~g~~~~~i----~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~ 275 (399)
+++.+.....+...... .+.++. +..-.++-.+..+....+++...+.+++.+|++++||||++++|+.+++.+.
T Consensus 103 enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLDEP~~gLD~~~~~~l~ 182 (271)
T PRK13632 103 DDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPKGKREIK 182 (271)
T ss_pred HHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHH
Confidence 77765422222222222 222222 1111111111122223455566677999999999999999999999999999
Q ss_pred HHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 276 KRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 276 ~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
+.++++..+ +..++++++|+++++. .+++++.+.+|.+...+++.++...+
T Consensus 183 ~~l~~~~~~-------~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~~ 233 (271)
T PRK13632 183 KIMVDLRKT-------RKKTLISITHDMDEAI-LADKVIVFSEGKLIAQGKPKEILNNK 233 (271)
T ss_pred HHHHHHHHh-------cCcEEEEEEechhHHh-hCCEEEEEECCEEEEecCHHHHhcCH
Confidence 999986542 1238899999998875 79999999999988777666555443
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.3e-19 Score=170.34 Aligned_cols=200 Identities=14% Similarity=0.091 Sum_probs=134.0
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC--C---cccceeeecCCCc------cccccCCeeEEecChHHHHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP--S---MFGFSVSHTTRAP------RAMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~--~---~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf~~~~ 194 (399)
.+....+|++++|+||||||||||+++|+|+.+ | ..| .+....... .......++|+||++.+|+ .
T Consensus 24 ~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~- 100 (252)
T PRK14239 24 VSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITG-SIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFP-M- 100 (252)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccc-eEEECCEECcCcccchHhhhhcEEEEecCCccCc-C-
Confidence 344556899999999999999999999999843 4 367 454322111 0112346899999987664 3
Q ss_pred hhhhhHHHHHHhccccCCc-HHH----HHHHHHc-CCc----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHH
Q 015825 195 KDGKFLEFASVHGNLYGTS-VEA----VEAVADA-GKR----CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g~~-~~~----i~~~~~~-g~~----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~ 264 (399)
++.+++.+....++.. ... +...++. +.. ..++-.+..+....+++...+.+++.+|++++||||++
T Consensus 101 ---tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~ 177 (252)
T PRK14239 101 ---SIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTS 177 (252)
T ss_pred ---cHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCcc
Confidence 6677766542222221 111 1112211 110 00111111122223455666678899999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 265 ARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 265 ~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
++|+.+++.+.+.|+++.. ..++++++|+++++...+++++.+.+|.+...+++.+++..|......
T Consensus 178 ~LD~~~~~~l~~~l~~~~~---------~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~ 244 (252)
T PRK14239 178 ALDPISAGKIEETLLGLKD---------DYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMNPKHKETE 244 (252)
T ss_pred ccCHHHHHHHHHHHHHHhh---------CCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHHHH
Confidence 9999999999999987632 138899999999999999999999999998888888777777655444
|
|
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.2e-19 Score=170.21 Aligned_cols=204 Identities=13% Similarity=0.106 Sum_probs=136.5
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC--C---cccceeeecCCCc------cccccCCeeEEecChHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP--S---MFGFSVSHTTRAP------RAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~--~---~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf 190 (399)
+..+.+....+|++++|+||||||||||+++|+|.++ + ..| .+.....+. .......++|+||++.+|
T Consensus 27 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 105 (259)
T PRK14274 27 ALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTG-EMNYNGSNILKGKVDLVELRKNIGMVFQKGNPF 105 (259)
T ss_pred eEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCce-EEEECCEEccccccCHHHHhhceEEEecCCccc
Confidence 3333445556999999999999999999999999986 2 367 443322111 111234689999997666
Q ss_pred HHHHhhhhhHHHHHHhccccCC-cHHH----HHHHHHc-CCce----EEecchhhHHHHHcCCcceeEEEEcCCChHHHH
Q 015825 191 EKAIKDGKFLEFASVHGNLYGT-SVEA----VEAVADA-GKRC----ILDIDVQGARSVRASPLDAIFIFICPPSMEELE 260 (399)
Q Consensus 191 ~~~~~~~~~~E~~~~~~~~~g~-~~~~----i~~~~~~-g~~~----vldld~~g~~~l~~~~~~~~~ili~~P~lllLD 260 (399)
+ . ++.+++.+....++. ..+. +.+.++. +... .++..+..+....+++...+.+++.+|++++||
T Consensus 106 ~-~----tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~laral~~~p~llllD 180 (259)
T PRK14274 106 P-Q----SIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMD 180 (259)
T ss_pred c-c----CHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 4 2 566776554333332 2222 2222222 1110 111111122223455566677999999999999
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 261 ERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 261 Epl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
||++++|+.++..+.+.|.++.+ ..++++++|+++.+...+++++.+.+|.+...+++.+++..|....+.
T Consensus 181 EPt~~LD~~~~~~l~~~l~~~~~---------~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~ 251 (259)
T PRK14274 181 EPTSALDPVSTRKIEELILKLKE---------KYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSNPDDQRTL 251 (259)
T ss_pred CCcccCCHHHHHHHHHHHHHHhc---------CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhhCCCCHHHH
Confidence 99999999999999999988642 138899999999999999999999999999888888777666544433
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-19 Score=170.29 Aligned_cols=202 Identities=13% Similarity=0.085 Sum_probs=134.2
Q ss_pred eccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-----cccceeeecCCCc------cccccCCeeEEecChHHHHH
Q 015825 124 WSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAP------RAMEKDGVHYHFTERSVMEK 192 (399)
Q Consensus 124 ~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-----~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf~~ 192 (399)
.+.++...+|++++|+||||||||||+++|+|..++ ..| .+....... ....+..++|+||++.+|+
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~- 97 (250)
T PRK14240 20 KKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEG-EVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFP- 97 (250)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCce-EEEECCEEccccccchHHHhccEEEEecCCccCc-
Confidence 334455669999999999999999999999998652 467 554322111 1112345899999976665
Q ss_pred HHhhhhhHHHHHHhccccCC-cHHH----HHHHHHcCCc-----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHH
Q 015825 193 AIKDGKFLEFASVHGNLYGT-SVEA----VEAVADAGKR-----CILDIDVQGARSVRASPLDAIFIFICPPSMEELEER 262 (399)
Q Consensus 193 ~~~~~~~~E~~~~~~~~~g~-~~~~----i~~~~~~g~~-----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEp 262 (399)
. ++.+++.+....++. .... +.+.++.... ..++-.+..+....+++...+.+++.+|++++||||
T Consensus 98 ~----t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 173 (250)
T PRK14240 98 M----SIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEP 173 (250)
T ss_pred c----cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 3 666776654332332 1111 2222221110 000111111222345566677799999999999999
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 263 LRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 263 l~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
++++|+.++..+.+.|+++.. ..++++++|+++.+...+++++.+.+|.++..+++.++...|....+.
T Consensus 174 ~~~LD~~~~~~l~~~l~~~~~---------~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 242 (250)
T PRK14240 174 TSALDPISTLKIEELIQELKK---------DYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTNPKDKRTE 242 (250)
T ss_pred CccCCHHHHHHHHHHHHHHhc---------CCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCCCChHHH
Confidence 999999999999988887531 138899999999999999999999999998877777666665544433
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=99.75 E-value=5.9e-19 Score=154.25 Aligned_cols=185 Identities=20% Similarity=0.168 Sum_probs=135.8
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC-------cc-ccccCCeeEEecChHHHHHHHhhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA-------PR-AMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~-------~~-~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
......+|+.++|+||||||||||+-.|+|+..+..| .++....+ .+ ......+|++||++.+.+.+
T Consensus 29 V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssG-eV~l~G~~L~~ldEd~rA~~R~~~vGfVFQSF~Lip~l---- 103 (228)
T COG4181 29 VELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSG-EVRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNL---- 103 (228)
T ss_pred ceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCc-eEEEcCcchhhcCHHHHHHhhccceeEEEEeeeccccc----
Confidence 3344568999999999999999999999999999999 66532211 11 12234689999999999988
Q ss_pred hhHHHHHHhccccCCcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 198 KFLEFASVHGNLYGTSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
+.+||+.....+.|.... ..++.+.. |+-..+.--|..+....+|++..+.+|...|++++.|||+.++|..+-+
T Consensus 104 tAlENV~lPleL~ge~~~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~ 183 (228)
T COG4181 104 TALENVALPLELRGESSADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGD 183 (228)
T ss_pred hhhhhccchhhhcCCccccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHH
Confidence 899999887777663322 22222222 3333333333333333456666777999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
++...+=.+.++. ..|.|+||||..-|. .|+|.+.+..|+++.
T Consensus 184 ~iaDLlF~lnre~-------G~TlVlVTHD~~LA~-Rc~R~~r~~~G~l~~ 226 (228)
T COG4181 184 KIADLLFALNRER-------GTTLVLVTHDPQLAA-RCDRQLRLRSGRLVE 226 (228)
T ss_pred HHHHHHHHHhhhc-------CceEEEEeCCHHHHH-hhhheeeeecceecc
Confidence 9988888777654 348999999986664 699999998887764
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.6e-19 Score=171.75 Aligned_cols=203 Identities=12% Similarity=0.064 Sum_probs=134.0
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC-----CcccceeeecCCCc------cccccCCeeEEecChHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRAP------RAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~-----~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf 190 (399)
+....+....+|++++|+||||||||||+++|+|+.+ +..| .+....... ......+++|+||++.+|
T Consensus 36 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 114 (268)
T PRK14248 36 AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEG-EILYEGLNILDSNINVVNLRREIGMVFQKPNPF 114 (268)
T ss_pred eeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCce-EEEECCEEcccccccHHHHhccEEEEecCCccC
Confidence 3333444556999999999999999999999999764 4677 454322111 111234689999997666
Q ss_pred HHHHhhhhhHHHHHHhccccCCc-H----HHHHHHHHc-CCce----EEecchhhHHHHHcCCcceeEEEEcCCChHHHH
Q 015825 191 EKAIKDGKFLEFASVHGNLYGTS-V----EAVEAVADA-GKRC----ILDIDVQGARSVRASPLDAIFIFICPPSMEELE 260 (399)
Q Consensus 191 ~~~~~~~~~~E~~~~~~~~~g~~-~----~~i~~~~~~-g~~~----vldld~~g~~~l~~~~~~~~~ili~~P~lllLD 260 (399)
+ . ++.+++.+....++.. . ..+...+.. +... .++-.+..+....+++...+.+++.+|++++||
T Consensus 115 ~-~----tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~laral~~~p~lllLD 189 (268)
T PRK14248 115 P-K----SIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLD 189 (268)
T ss_pred c-c----cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHHHHhCCCCEEEEc
Confidence 4 2 5666665432222211 1 112222221 1100 001111112222455666777999999999999
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhh
Q 015825 261 ERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSV 339 (399)
Q Consensus 261 Epl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v 339 (399)
||++++|+.+++.+.+.++++.+ ..++++++|+++++...+++++.+.+|.++..+++.++...|.+..+
T Consensus 190 EPt~~LD~~~~~~l~~~l~~~~~---------~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~ 259 (268)
T PRK14248 190 EPASALDPISNAKIEELITELKE---------EYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTSPKQQKT 259 (268)
T ss_pred CCCcccCHHHHHHHHHHHHHHhc---------CCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCChHH
Confidence 99999999999999999988642 13889999999999999999999999999888877777776655443
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.9e-19 Score=168.15 Aligned_cols=196 Identities=14% Similarity=0.147 Sum_probs=134.3
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--ccccCCeeEEecChHHHHHHHhhhhhHHHHH
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~ 204 (399)
+....+|++++|+||||||||||+++|+|++++..| .+........ ......++|+||+..+|+.. ++.+++.
T Consensus 19 s~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G-~v~i~g~~~~~~~~~~~~i~~~~q~~~~~~~~----t~~e~l~ 93 (235)
T cd03299 19 SLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSG-KILLNGKDITNLPPEKRDISYVPQNYALFPHM----TVYKNIA 93 (235)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCce-EEEECCEEcCcCChhHcCEEEEeecCccCCCc----cHHHHHH
Confidence 344568999999999999999999999999999888 5543221111 11134689999997766554 6677766
Q ss_pred HhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHH
Q 015825 205 VHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLR 279 (399)
Q Consensus 205 ~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~ 279 (399)
+....++..... +.+.++. +....++-.+..+....+++...+.+++..|++++||||++++|+.+++.+.+.++
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~ 173 (235)
T cd03299 94 YGLKKRKVDKKEIERKVLEIAEMLGIDHLLNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELK 173 (235)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCChhHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEECCCcccCCHHHHHHHHHHHH
Confidence 543233322222 2222222 11111111111122234555666779999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 280 NAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 280 ~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
++..+. ..++++++|+++++...+++++.+.+|.++..+++.++...|
T Consensus 174 ~~~~~~-------~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 221 (235)
T cd03299 174 KIRKEF-------GVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKKP 221 (235)
T ss_pred HHHHhc-------CCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCc
Confidence 865431 248899999999999899999999999888777666555554
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=3.6e-19 Score=170.11 Aligned_cols=205 Identities=12% Similarity=0.051 Sum_probs=137.5
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCc-----ccceeeecCCC------ccccccCCeeEEecChHHHH
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM-----FGFSVSHTTRA------PRAMEKDGVHYHFTERSVME 191 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~-----~g~~i~~ttr~------~~~~~~~~i~yvfq~~~lf~ 191 (399)
..+.+....+|++++|+||||||||||+++|+|+.++. .| .+.....+ ........++|+||+..+|+
T Consensus 23 l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G-~i~~~g~~i~~~~~~~~~~~~~i~~~~q~~~l~~ 101 (261)
T PRK14258 23 LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEG-RVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFP 101 (261)
T ss_pred eeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccc-eEEECCEEhhccccchHHhhccEEEEecCCccCc
Confidence 33344555699999999999999999999999999874 45 33321111 11112346899999877665
Q ss_pred HHHhhhhhHHHHHHhccccCC-cHHH----HHHHHHc-CCce----EEecchhhHHHHHcCCcceeEEEEcCCChHHHHH
Q 015825 192 KAIKDGKFLEFASVHGNLYGT-SVEA----VEAVADA-GKRC----ILDIDVQGARSVRASPLDAIFIFICPPSMEELEE 261 (399)
Q Consensus 192 ~~~~~~~~~E~~~~~~~~~g~-~~~~----i~~~~~~-g~~~----vldld~~g~~~l~~~~~~~~~ili~~P~lllLDE 261 (399)
. ++.|++.+....++. +... +...++. +... .++-.+..+....+++...+.+++.+|++++|||
T Consensus 102 -~----tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~vllLDE 176 (261)
T PRK14258 102 -M----SVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDE 176 (261)
T ss_pred -c----cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 4 667776553222222 2111 2222222 1100 1111111222234555666678999999999999
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccC-----CeeeecCCCccccCCCcc
Q 015825 262 RLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDG-----SIATNHQTSPKGIDLPAD 336 (399)
Q Consensus 262 pl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~-----~~~~~~~~~~~~~~~p~~ 336 (399)
|++++|+.+++.+.+.+.++..+. ..++++++|+++++...+++++.+.+ |.++..+++++++..|..
T Consensus 177 P~~~LD~~~~~~l~~~l~~l~~~~-------~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~~~~~ 249 (261)
T PRK14258 177 PCFGLDPIASMKVESLIQSLRLRS-------ELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKKIFNSPHD 249 (261)
T ss_pred CCccCCHHHHHHHHHHHHHHHHhC-------CCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCHHHHHhCCCC
Confidence 999999999999999998865321 23889999999999999999999998 999888888888877765
Q ss_pred hhhh
Q 015825 337 HSVS 340 (399)
Q Consensus 337 ~~v~ 340 (399)
....
T Consensus 250 ~~~~ 253 (261)
T PRK14258 250 SRTR 253 (261)
T ss_pred HHHH
Confidence 4443
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.1e-19 Score=170.31 Aligned_cols=201 Identities=12% Similarity=0.031 Sum_probs=135.1
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC-----CcccceeeecCCCc------cccccCCeeEEecChHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRAP------RAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~-----~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf 190 (399)
+..+.+....+|++++|+||||||||||+++|+|+++ +..| .+....... ......+++|+||++.+|
T Consensus 35 il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~ 113 (267)
T PRK14237 35 AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTG-QILYRGIDINRKEINVYEMRKHIGMVFQRPNPF 113 (267)
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcce-EEEECCEEcccccCChHHHhcceEEEecCCccc
Confidence 3333445556999999999999999999999999986 3577 554322111 111234689999997666
Q ss_pred HHHHhhhhhHHHHHHhccccCC-cHHH----HHHHHHc-CCc----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHH
Q 015825 191 EKAIKDGKFLEFASVHGNLYGT-SVEA----VEAVADA-GKR----CILDIDVQGARSVRASPLDAIFIFICPPSMEELE 260 (399)
Q Consensus 191 ~~~~~~~~~~E~~~~~~~~~g~-~~~~----i~~~~~~-g~~----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLD 260 (399)
+ . ++.+++.+.....+. .... +.+.++. +.. ..++-.+..+....+++...+.+++..|++++||
T Consensus 114 ~-~----tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~laral~~~p~lllLD 188 (267)
T PRK14237 114 A-K----SIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMD 188 (267)
T ss_pred c-c----cHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 4 2 667776653222222 1211 2222222 110 0111111112223345566677999999999999
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcch
Q 015825 261 ERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADH 337 (399)
Q Consensus 261 Epl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~ 337 (399)
||++++|+.+.+.+.+.|.++.. ..++|+++|+++++...+++++.+.+|.++..+++.++...|...
T Consensus 189 EPt~~LD~~~~~~l~~~l~~~~~---------~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~ 256 (267)
T PRK14237 189 EPASALDPISTMQLEETMFELKK---------NYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFTNPKLQ 256 (267)
T ss_pred CCcccCCHHHHHHHHHHHHHHhc---------CCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcCCCcH
Confidence 99999999999999999987632 127899999999999999999999999999888877776665433
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.6e-19 Score=168.77 Aligned_cols=203 Identities=14% Similarity=0.093 Sum_probs=134.5
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-----cccceeeecCCC-----ccccccCCeeEEecChHHH
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRA-----PRAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-----~~g~~i~~ttr~-----~~~~~~~~i~yvfq~~~lf 190 (399)
.+..+.+....+|++++|+||||||||||+++|+|+.++ ..| .+...... .......+++|+||++.+|
T Consensus 17 ~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~v~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~ 95 (249)
T PRK14253 17 QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITG-KLTMDGEDIYGNIDVADLRIKVGMVFQKPNPF 95 (249)
T ss_pred eeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCce-EEEECCEEcccccchHHHHhheeEEecCCCcC
Confidence 344444455679999999999999999999999999875 366 44432111 1112234689999998766
Q ss_pred HHHHhhhhhHHHHHHhccccCCc-HHHH----HHHHHc-CCce----EEecchhhHHHHHcCCcceeEEEEcCCChHHHH
Q 015825 191 EKAIKDGKFLEFASVHGNLYGTS-VEAV----EAVADA-GKRC----ILDIDVQGARSVRASPLDAIFIFICPPSMEELE 260 (399)
Q Consensus 191 ~~~~~~~~~~E~~~~~~~~~g~~-~~~i----~~~~~~-g~~~----vldld~~g~~~l~~~~~~~~~ili~~P~lllLD 260 (399)
+ . ++.+++.+....++.. .... .+.++. +... .++..+..+....++++..+.+++.+|++++||
T Consensus 96 ~-~----tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 170 (249)
T PRK14253 96 P-M----SIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMD 170 (249)
T ss_pred c-c----cHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 5 3 6667765532222211 1111 112211 1100 011111112223345566677899999999999
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchh
Q 015825 261 ERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHS 338 (399)
Q Consensus 261 Epl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~ 338 (399)
||++++|+.+...+.+.|+++.++ .++++++|+++++...+++++.+.+|++...+++.++...|....
T Consensus 171 EP~~~LD~~~~~~l~~~l~~~~~~---------~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 239 (249)
T PRK14253 171 EPTSALDPIATHKIEELMEELKKN---------YTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSNPKDDR 239 (249)
T ss_pred CCCccCCHHHHHHHHHHHHHHhcC---------CeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCCChH
Confidence 999999999999999998886421 388999999999999999999999999988777666655554433
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4e-19 Score=170.42 Aligned_cols=202 Identities=13% Similarity=0.104 Sum_probs=134.8
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-----cccceeeecCCCc------cccccCCeeEEecChHH
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAP------RAMEKDGVHYHFTERSV 189 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-----~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~l 189 (399)
.+..+.+....+|++++|+||||||||||+++|+|+.++ ..| .+....... .......++|+||++.+
T Consensus 33 ~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~ 111 (267)
T PRK14235 33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTG-KITLDGEDIYDPRLDVVELRARVGMVFQKPNP 111 (267)
T ss_pred EEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCce-EEEECCEECcccccchHHHhhceEEEecCCCC
Confidence 344444455679999999999999999999999999864 677 554322111 11123458999999766
Q ss_pred HHHHHhhhhhHHHHHHhccccCC--cHH----HHHHHHHc-CCce----EEecchhhHHHHHcCCcceeEEEEcCCChHH
Q 015825 190 MEKAIKDGKFLEFASVHGNLYGT--SVE----AVEAVADA-GKRC----ILDIDVQGARSVRASPLDAIFIFICPPSMEE 258 (399)
Q Consensus 190 f~~~~~~~~~~E~~~~~~~~~g~--~~~----~i~~~~~~-g~~~----vldld~~g~~~l~~~~~~~~~ili~~P~lll 258 (399)
|+ . ++.+++.+....++. ... .+.+.++. +... .++-.+..+....+++...+.+++.+|++++
T Consensus 112 ~~-~----tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lll 186 (267)
T PRK14235 112 FP-K----SIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVIL 186 (267)
T ss_pred CC-C----cHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 54 2 566766554322221 111 12222222 1100 0111111222234556667779999999999
Q ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcch
Q 015825 259 LEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADH 337 (399)
Q Consensus 259 LDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~ 337 (399)
||||++++|+.++..+.+.|+++.. ..++++++|+++.+...+++++.+.+|.++..+++.++...|...
T Consensus 187 LDEPt~~LD~~~~~~l~~~L~~l~~---------~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~ 256 (267)
T PRK14235 187 MDEPCSALDPIATAKVEELIDELRQ---------NYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTNPDDP 256 (267)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHhc---------CCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCCCCH
Confidence 9999999999999999999987632 138899999999998889999999999988877766666555433
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.4e-19 Score=166.51 Aligned_cols=179 Identities=15% Similarity=0.123 Sum_probs=117.8
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--------cccccCCeeEEecChHHHHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--------RAMEKDGVHYHFTERSVMEKA 193 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--------~~~~~~~i~yvfq~~~lf~~~ 193 (399)
+..+.+....+|++++|+||||||||||+++|+|++++..| .+....... ......+++|+||++.+|+.+
T Consensus 13 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~ 91 (206)
T TIGR03608 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSG-QVYLNGKETPPLNSKKASKFRREKLGYLFQNFALIENE 91 (206)
T ss_pred EEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCe-EEEECCEEccccchhhHHHHHHhCeeEEecchhhccCC
Confidence 33334455568999999999999999999999999999888 554432221 111234689999998777654
Q ss_pred HhhhhhHHHHHHhccccCCcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCC
Q 015825 194 IKDGKFLEFASVHGNLYGTSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGT 268 (399)
Q Consensus 194 ~~~~~~~E~~~~~~~~~g~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~ 268 (399)
++.+++.+....++.... .+.+.++. +.....+-.+..+....+++...+.+++.+|++++||||++++|+
T Consensus 92 ----t~~e~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qr~~laral~~~p~llllDEPt~~LD~ 167 (206)
T TIGR03608 92 ----TVEENLDLGLKYKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKDPPLILADEPTGSLDP 167 (206)
T ss_pred ----cHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCchhhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcCCCCH
Confidence 677777654332332222 22222322 111111111122222345566677799999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhh
Q 015825 269 ETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHL 314 (399)
Q Consensus 269 ~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii 314 (399)
.+++.+.+.++++.++ ..++++++|+++.. ..+++++
T Consensus 168 ~~~~~l~~~l~~~~~~--------~~tii~~sh~~~~~-~~~d~i~ 204 (206)
T TIGR03608 168 KNRDEVLDLLLELNDE--------GKTIIIVTHDPEVA-KQADRVI 204 (206)
T ss_pred HHHHHHHHHHHHHHhc--------CCEEEEEeCCHHHH-hhcCEEE
Confidence 9999999999876432 23889999998753 4555543
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=6.3e-19 Score=168.10 Aligned_cols=199 Identities=14% Similarity=0.079 Sum_probs=130.2
Q ss_pred ccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC-----cc---cc-----ccCCeeEEecChH--H
Q 015825 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA-----PR---AM-----EKDGVHYHFTERS--V 189 (399)
Q Consensus 125 s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~-----~~---~~-----~~~~i~yvfq~~~--l 189 (399)
+.+....+|++++|+||||||||||+++|+|+++|..| .+...... .. .. ....++|+||++. +
T Consensus 24 ~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~i~~~~~~~~~~~~~~~i~~v~q~~~~~~ 102 (258)
T PRK11701 24 DVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAG-EVHYRMRDGQLRDLYALSEAERRRLLRTEWGFVHQHPRDGL 102 (258)
T ss_pred eeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-EEEECCccccccccccCCHHHHHHHhhcceEEEeeCccccc
Confidence 34445569999999999999999999999999999888 55443322 11 00 1235899999863 2
Q ss_pred HHHHHhhhhhHHHHHHh----cc-ccCCcHHHHHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHH
Q 015825 190 MEKAIKDGKFLEFASVH----GN-LYGTSVEAVEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEER 262 (399)
Q Consensus 190 f~~~~~~~~~~E~~~~~----~~-~~g~~~~~i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEp 262 (399)
+... ++.+++.+. .. .++.....+.+.++. +.. ..++-.+..+....+++...+.+++.+|++++||||
T Consensus 103 ~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qrl~laral~~~p~llllDEP 178 (258)
T PRK11701 103 RMQV----SAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEP 178 (258)
T ss_pred Cccc----cHHHHHHHHHHHhccCcHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 2222 223333221 10 011111122222222 110 011111111222345556667789999999999999
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 263 LRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 263 l~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
++++|+.+.+.+.+.++++..+. ..++|+++|+++.+...+++++.+.+|.++..+++.++...|.
T Consensus 179 t~~LD~~~~~~l~~~l~~~~~~~-------~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~~~ 244 (258)
T PRK11701 179 TGGLDVSVQARLLDLLRGLVREL-------GLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLDDPQ 244 (258)
T ss_pred cccCCHHHHHHHHHHHHHHHHhc-------CcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcCCC
Confidence 99999999999999998765431 2388999999999999999999999999988887777666554
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.5e-19 Score=185.10 Aligned_cols=203 Identities=13% Similarity=0.099 Sum_probs=137.8
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-----c--cccCCeeEEecChH--HHHHH
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-----A--MEKDGVHYHFTERS--VMEKA 193 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-----~--~~~~~i~yvfq~~~--lf~~~ 193 (399)
....+....+|++++|+||||||||||+++|+|+++ ..| .+....+... . .....++|+||++. +++.+
T Consensus 302 l~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G-~i~~~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~ 379 (529)
T PRK15134 302 VKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQG-EIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRL 379 (529)
T ss_pred eecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCc-EEEECCEEccccchhhHHHhhhceEEEEeCchhhcCCcc
Confidence 333445567999999999999999999999999986 677 5543221110 0 11245899999863 44444
Q ss_pred HhhhhhHHHHHHhccccC--CcHH----HHHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHh
Q 015825 194 IKDGKFLEFASVHGNLYG--TSVE----AVEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRA 265 (399)
Q Consensus 194 ~~~~~~~E~~~~~~~~~g--~~~~----~i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~ 265 (399)
++.+++.+....++ .... .+.+.++. +.. ...+-.+..+....++++..+.+++.+|++++||||+++
T Consensus 380 ----tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~ 455 (529)
T PRK15134 380 ----NVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSS 455 (529)
T ss_pred ----cHHHHHHHHHHhccccCChHHHHHHHHHHHHHcCCCHHHHhcCCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccc
Confidence 67777665322221 2221 22222322 110 011111222223345667777899999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchh
Q 015825 266 RGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHS 338 (399)
Q Consensus 266 lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~ 338 (399)
+|+.+++.+.+.|+++.++. ..++|+++||++.+...+++++.+.+|.++..+++.++++.|....
T Consensus 456 LD~~~~~~l~~~l~~~~~~~-------~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 521 (529)
T PRK15134 456 LDKTVQAQILALLKSLQQKH-------QLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQQEY 521 (529)
T ss_pred cCHHHHHHHHHHHHHHHHhh-------CCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEcCHHHHhcCCCChH
Confidence 99999999999999876432 2388999999999999999999999999988887777776665443
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.3e-19 Score=171.85 Aligned_cols=207 Identities=13% Similarity=0.062 Sum_probs=139.1
Q ss_pred eEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-----cccceeeecCCCc-----cccccCCeeEEecChHH
Q 015825 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAP-----RAMEKDGVHYHFTERSV 189 (399)
Q Consensus 120 ~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-----~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~l 189 (399)
..+..+.++...+|++++|+||||||||||+++|+|++++ ..| .+....... .......++|+||++.+
T Consensus 34 ~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~l 112 (276)
T PRK14271 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSG-DVLLGGRSIFNYRDVLEFRRRVGMLFQRPNP 112 (276)
T ss_pred EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCce-EEEECCEEccccchhHHHhhheEEeccCCcc
Confidence 3444444455679999999999999999999999999875 467 554322111 11123468999999876
Q ss_pred HHHHHhhhhhHHHHHHhccccC-CcHHHHH----HHHHc-CCceE----EecchhhHHHHHcCCcceeEEEEcCCChHHH
Q 015825 190 MEKAIKDGKFLEFASVHGNLYG-TSVEAVE----AVADA-GKRCI----LDIDVQGARSVRASPLDAIFIFICPPSMEEL 259 (399)
Q Consensus 190 f~~~~~~~~~~E~~~~~~~~~g-~~~~~i~----~~~~~-g~~~v----ldld~~g~~~l~~~~~~~~~ili~~P~lllL 259 (399)
|+ . ++.+++.+...... ....... +.++. +.... ++-.+..+....+++...+.+++.+|++++|
T Consensus 113 ~~-~----tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAral~~~p~lllL 187 (276)
T PRK14271 113 FP-M----SIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLL 187 (276)
T ss_pred CC-c----cHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 65 3 56666654321111 1222221 22222 11100 1111112222345566677799999999999
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhh
Q 015825 260 EERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSV 339 (399)
Q Consensus 260 DEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v 339 (399)
|||++++|..+++.+.+.|.++.++ .++|+++|+++++...+++++.+.+|.++..+++.++...|.....
T Consensus 188 DEPt~~LD~~~~~~l~~~L~~~~~~---------~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~ 258 (276)
T PRK14271 188 DEPTSALDPTTTEKIEEFIRSLADR---------LTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHAET 258 (276)
T ss_pred cCCcccCCHHHHHHHHHHHHHHhcC---------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCcHHH
Confidence 9999999999999998888876421 3899999999999999999999999999888888877777765544
Q ss_pred hc
Q 015825 340 SK 341 (399)
Q Consensus 340 ~~ 341 (399)
..
T Consensus 259 ~~ 260 (276)
T PRK14271 259 AR 260 (276)
T ss_pred HH
Confidence 43
|
|
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.3e-19 Score=169.60 Aligned_cols=196 Identities=12% Similarity=0.113 Sum_probs=131.3
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcc---cceeeecCCCcc---------ccccCCeeEEecChHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMF---GFSVSHTTRAPR---------AMEKDGVHYHFTERSV 189 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~---g~~i~~ttr~~~---------~~~~~~i~yvfq~~~l 189 (399)
+..+.+....+|++++|+||||||||||+++|+|.+++.. | .+........ .....+++|+||++.+
T Consensus 19 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (262)
T PRK09984 19 ALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGS-HIELLGRTVQREGRLARDIRKSRANTGYIFQQFNL 97 (262)
T ss_pred EEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCce-EEEECCEecccccccchhHHHHHhheEEEcccccc
Confidence 3333445556999999999999999999999999998753 6 4443221110 1113458999999877
Q ss_pred HHHHHhhhhhHHHHHHhccc--------cCC-c---HHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCCh
Q 015825 190 MEKAIKDGKFLEFASVHGNL--------YGT-S---VEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSM 256 (399)
Q Consensus 190 f~~~~~~~~~~E~~~~~~~~--------~g~-~---~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~l 256 (399)
|+.+ ++.+++.+.... ++. . ...+.+.++. +.....+..+..+....+++...+.+++..|++
T Consensus 98 ~~~~----tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 173 (262)
T PRK09984 98 VNRL----SVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHFAHQRVSTLSGGQQQRVAIARALMQQAKV 173 (262)
T ss_pred ccCC----cHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHHHhCCccccCHHHHHHHHHHHHHhcCCCE
Confidence 6654 677776543210 011 1 1122222222 111111111222222345556667789999999
Q ss_pred HHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcc
Q 015825 257 EELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPK 329 (399)
Q Consensus 257 llLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~ 329 (399)
++||||++++|..+.+.+.+.|+++..+. ..++|+++|+++++...+++++.+.+|.+...+++.+
T Consensus 174 lllDEPt~~LD~~~~~~l~~~l~~~~~~~-------g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g~~~~ 239 (262)
T PRK09984 174 ILADEPIASLDPESARIVMDTLRDINQND-------GITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQ 239 (262)
T ss_pred EEecCccccCCHHHHHHHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999875431 2388999999999999999999999998887777655
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.5e-19 Score=168.29 Aligned_cols=201 Identities=13% Similarity=0.129 Sum_probs=134.5
Q ss_pred ccCccCCCCcEEEEEcCCCCCHHHHHhhhhhc---cCC--cccceeeecCCCc------cccccCCeeEEecChHHHHHH
Q 015825 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKE---FPS--MFGFSVSHTTRAP------RAMEKDGVHYHFTERSVMEKA 193 (399)
Q Consensus 125 s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~---~~~--~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf~~~ 193 (399)
..+....+|++++|+||||||||||+++|+|+ .++ ..| .+.....+. ......+++|+||++.+|+ .
T Consensus 21 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~ 98 (250)
T PRK14245 21 GISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEG-EIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFP-K 98 (250)
T ss_pred eeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCce-EEEECCEecccccccHHHHhhheEEEecCCccCc-c
Confidence 33445568999999999999999999999986 344 367 454322111 1112346899999976654 2
Q ss_pred HhhhhhHHHHHHhccccCCc-H----HHHHHHHHc-CCce----EEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHH
Q 015825 194 IKDGKFLEFASVHGNLYGTS-V----EAVEAVADA-GKRC----ILDIDVQGARSVRASPLDAIFIFICPPSMEELEERL 263 (399)
Q Consensus 194 ~~~~~~~E~~~~~~~~~g~~-~----~~i~~~~~~-g~~~----vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl 263 (399)
++.+++.+....++.. . ..+.+.++. +... .++-.+..+....+++...+.+++.+|++++||||+
T Consensus 99 ----tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt 174 (250)
T PRK14245 99 ----SIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPA 174 (250)
T ss_pred ----cHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 5666665432222211 1 122223322 1110 011111122223455566677899999999999999
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 264 RARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 264 ~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
+++|+.+++.+.+.|+++.+ ..++++++|+++++...+++++.+.+|.++..+++.++...|......
T Consensus 175 ~~LD~~~~~~l~~~l~~~~~---------~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~~~~~~~~~ 242 (250)
T PRK14245 175 SALDPISTAKVEELIHELKK---------DYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNPEKEATQ 242 (250)
T ss_pred ccCCHHHHHHHHHHHHHHhc---------CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhcCCCChHHH
Confidence 99999999999999988631 238899999999999999999999999999888888887776554443
|
|
| >cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2 | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.6e-17 Score=143.67 Aligned_cols=120 Identities=58% Similarity=0.918 Sum_probs=111.2
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccCCcH
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSV 214 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g~~~ 214 (399)
+++|+||||||||||++.|++.++..++..++|+||+++..+.++..|+|.+...|..+...+.|.++..+.++.||.+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~~~~~~~v~~tTr~p~~~e~~g~~~~~v~~~~~~~~~~~~~f~e~~~~~~~~yg~~~ 80 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPGEVDGVDYHFVSKEEFERLIENGEFLEWAEFHGNYYGTSK 80 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCCccceecccccccCCCCCccCCceeEEeCHHHHHHHHHcCCeEEEEEEcCEEecCcH
Confidence 47899999999999999999998777777888999999988888999999999999988888899999999999999999
Q ss_pred HHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCC
Q 015825 215 EAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPP 254 (399)
Q Consensus 215 ~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P 254 (399)
..+.+..+.++.++++++.++...++...+....+|+.+|
T Consensus 81 ~~i~~~~~~g~~~il~~~~~~~~~l~~~~~~~~~I~i~~~ 120 (137)
T cd00071 81 AAVEEALAEGKIVILEIDVQGARQVKKSYPDAVSIFILPP 120 (137)
T ss_pred HHHHHHHhCCCeEEEEecHHHHHHHHHcCCCeEEEEEECC
Confidence 9999999999999999999999999998889999999987
|
7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.1e-19 Score=182.87 Aligned_cols=198 Identities=14% Similarity=0.109 Sum_probs=137.4
Q ss_pred eEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC--cccceeeecCCCc-----cccccCCeeEEecChHHHHH
Q 015825 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS--MFGFSVSHTTRAP-----RAMEKDGVHYHFTERSVMEK 192 (399)
Q Consensus 120 ~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~--~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~lf~~ 192 (399)
..+....+....+|++++|+||||||||||+++|+|++++ ..| .+....... ......+++|+||++.+++.
T Consensus 18 ~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~ 96 (506)
T PRK13549 18 VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEG-EIIFEGEELQASNIRDTERAGIAIIHQELALVKE 96 (506)
T ss_pred eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCe-EEEECCEECCCCCHHHHHHCCeEEEEeccccCCC
Confidence 3344444455679999999999999999999999999986 677 554322111 11113468999999877665
Q ss_pred HHhhhhhHHHHHHhcccc--C-CcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHH
Q 015825 193 AIKDGKFLEFASVHGNLY--G-TSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (399)
Q Consensus 193 ~~~~~~~~E~~~~~~~~~--g-~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~ 264 (399)
+ ++.+++.+....+ + ...+ .+.+.++. +.....+..+..+....+++...+.+++.+|++++||||++
T Consensus 97 ~----tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~ 172 (506)
T PRK13549 97 L----SVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTA 172 (506)
T ss_pred C----cHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCC
Confidence 5 7778776643221 1 1222 22233322 11112222233333345677778889999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccc
Q 015825 265 ARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKG 330 (399)
Q Consensus 265 ~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~ 330 (399)
++|+.++..+.+.|.++.++ ..++|+++|+++.+...+++++.+.+|.++..+++.++
T Consensus 173 ~LD~~~~~~l~~~l~~l~~~--------~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 230 (506)
T PRK13549 173 SLTESETAVLLDIIRDLKAH--------GIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGM 230 (506)
T ss_pred CCCHHHHHHHHHHHHHHHHC--------CCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccC
Confidence 99999999999999887421 23789999999999999999999999988877665543
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-19 Score=168.19 Aligned_cols=203 Identities=12% Similarity=0.088 Sum_probs=134.7
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCc-----ccceeeecCCCc------cccccCCeeEEecChHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM-----FGFSVSHTTRAP------RAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~-----~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf 190 (399)
+..+.++...+|++++|+||||||||||+++|+|.+++. .| .+....... ......+++|+||++.+|
T Consensus 19 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 97 (252)
T PRK14272 19 AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTG-RILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPF 97 (252)
T ss_pred eeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCce-eEEECCEEcccCccCHHHhhceeEEEeccCccC
Confidence 333344556699999999999999999999999998753 56 444322111 111234689999997766
Q ss_pred HHHHhhhhhHHHHHHhccccCC-cHHHHHHH----HHcC-Cc----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHH
Q 015825 191 EKAIKDGKFLEFASVHGNLYGT-SVEAVEAV----ADAG-KR----CILDIDVQGARSVRASPLDAIFIFICPPSMEELE 260 (399)
Q Consensus 191 ~~~~~~~~~~E~~~~~~~~~g~-~~~~i~~~----~~~g-~~----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLD 260 (399)
+.. ++.+++.+.....+. ......+. +... .. ...+..+..+....+++...+.+++.+|++++||
T Consensus 98 ~~~----t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllD 173 (252)
T PRK14272 98 PTM----SVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMD 173 (252)
T ss_pred cCC----CHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 554 667776543222221 12211111 1111 00 0011111112222345566677999999999999
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchh
Q 015825 261 ERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHS 338 (399)
Q Consensus 261 Epl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~ 338 (399)
||++++|+.+++.+.+.|+++.+ ..++++++|+++.+...+++++.+.+|.++..+++.++...|....
T Consensus 174 EP~~~LD~~~~~~l~~~l~~~~~---------~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 242 (252)
T PRK14272 174 EPTSALDPASTARIEDLMTDLKK---------VTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTNPRDER 242 (252)
T ss_pred CCCccCCHHHHHHHHHHHHHHhc---------CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCcHH
Confidence 99999999999999999887642 1388999999999998999999999999988887777766665433
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.6e-19 Score=167.87 Aligned_cols=202 Identities=14% Similarity=0.097 Sum_probs=135.3
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC---CcccceeeecCCC----ccccccCCeeEEecChHHHHHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP---SMFGFSVSHTTRA----PRAMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~---~~~g~~i~~ttr~----~~~~~~~~i~yvfq~~~lf~~~~ 194 (399)
+..+.+....+|++++|+||||||||||+++|+|+++ +..| .+...... ........++|+||++.+|+ .
T Consensus 17 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~i~~~~q~~~l~~-~- 93 (246)
T PRK14269 17 ALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDG-LVEIEGKDVKNQDVVALRKNVGMVFQQPNVFV-K- 93 (246)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCce-EEEECCEecccCCHHHHhhhEEEEecCCcccc-c-
Confidence 3333445556999999999999999999999999874 5677 55432211 11122346899999987764 3
Q ss_pred hhhhhHHHHHHhccccCC--cHH----HHHHHHHc-CCc----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHH
Q 015825 195 KDGKFLEFASVHGNLYGT--SVE----AVEAVADA-GKR----CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERL 263 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g~--~~~----~i~~~~~~-g~~----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl 263 (399)
++.+++.+....++. ... .+.+.++. +.. ..++-.+..+....+++...+.+++.+|++++||||+
T Consensus 94 ---tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEP~ 170 (246)
T PRK14269 94 ---SIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPT 170 (246)
T ss_pred ---cHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 677777654322221 111 12222222 110 0011111112223455566677999999999999999
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchh
Q 015825 264 RARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHS 338 (399)
Q Consensus 264 ~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~ 338 (399)
+++|+.++..+.+.|.++.. ..++++++|+++++...+++++.+.+|+++..+++.+++..|....
T Consensus 171 ~~LD~~~~~~l~~~l~~~~~---------~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 236 (246)
T PRK14269 171 SALDPISSGVIEELLKELSH---------NLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENPKQEK 236 (246)
T ss_pred ccCCHHHHHHHHHHHHHHhC---------CCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhCCCcHH
Confidence 99999999999888887531 2388999999999999999999999999998887777766554333
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.3e-19 Score=171.34 Aligned_cols=199 Identities=14% Similarity=0.130 Sum_probs=133.6
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccC-----CcccceeeecCCCc------cccccCCeeEEecChHHHHHHHh
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRAP------RAMEKDGVHYHFTERSVMEKAIK 195 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~-----~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf~~~~~ 195 (399)
+....+|++++|+|+||||||||+++|+|+++ +..| .+.....+. .......++|+||++.+|+ .
T Consensus 44 sl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~-- 119 (271)
T PRK14238 44 NLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTG-KILYRDQNIFDKSYSVEELRTNVGMVFQKPNPFP-K-- 119 (271)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCce-eEEECCEEcccccccHHHHhhhEEEEecCCcccc-c--
Confidence 34456899999999999999999999999986 4677 454322111 1111346899999977664 2
Q ss_pred hhhhHHHHHHhccccCCc-HHHH----HHHHHcCCc--eE---EecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHh
Q 015825 196 DGKFLEFASVHGNLYGTS-VEAV----EAVADAGKR--CI---LDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRA 265 (399)
Q Consensus 196 ~~~~~E~~~~~~~~~g~~-~~~i----~~~~~~g~~--~v---ldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~ 265 (399)
++.+++.+....++.. .... .+.+..... .+ ++-.+..+....+++...+.+++.+|++++||||+++
T Consensus 120 --tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~laraL~~~p~lllLDEPt~~ 197 (271)
T PRK14238 120 --SIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSA 197 (271)
T ss_pred --cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCCCc
Confidence 5667766532222221 1111 111211100 00 0111111222234556667789999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 266 RGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 266 lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
+|+.+...+.+.|.++.+ ..++++++|+++++...+++++.+.+|.+...+++.+++..|......
T Consensus 198 LD~~~~~~l~~~l~~~~~---------~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~ 263 (271)
T PRK14238 198 LDPISTLKVEELVQELKK---------DYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSNPSDKRTE 263 (271)
T ss_pred CCHHHHHHHHHHHHHHHc---------CCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCCCHHHH
Confidence 999999999998887642 138899999999999999999999999998888877777776554433
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.7e-19 Score=168.96 Aligned_cols=201 Identities=14% Similarity=0.083 Sum_probs=135.3
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCc-----ccceeeecCCCc------cccccCCeeEEecChHHHHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM-----FGFSVSHTTRAP------RAMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~-----~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf~~~~ 194 (399)
.+....+|++++|+||||||||||+++|+|++++. .| .+....... .......++|+||++.+|+ .
T Consensus 23 ~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~v~~~g~~~~~~~~~~~~~~~~i~~v~q~~~~~~-~- 99 (251)
T PRK14249 23 INMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEG-AVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFP-K- 99 (251)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCccc-EEEECCEEccccccChHHhhceEEEEecCCccCc-C-
Confidence 33455689999999999999999999999999876 36 443321111 0111346899999987664 2
Q ss_pred hhhhhHHHHHHhccccCCcH-H----HHHHHHHc-CCc----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHH
Q 015825 195 KDGKFLEFASVHGNLYGTSV-E----AVEAVADA-GKR----CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g~~~-~----~i~~~~~~-g~~----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~ 264 (399)
++.+++.+....++... + .+...+.. +.. -.++-.+..+....+++...+.+++.+|++++||||++
T Consensus 100 ---tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLDEPt~ 176 (251)
T PRK14249 100 ---SIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCS 176 (251)
T ss_pred ---cHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 56677665433222221 1 11111111 110 00111111122223455666679999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhc
Q 015825 265 ARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSK 341 (399)
Q Consensus 265 ~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~ 341 (399)
++|+.+.+.+.+.|.++. + ..++++++|+++.+...+++++.+.+|.+...+++.++...|....+..
T Consensus 177 ~LD~~~~~~l~~~l~~~~-~--------~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 244 (251)
T PRK14249 177 ALDPVSTMRIEELMQELK-Q--------NYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRPRDKRTED 244 (251)
T ss_pred cCCHHHHHHHHHHHHHHh-c--------CCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHhCCCChHHHH
Confidence 999999999988888753 1 2389999999999999999999999999988888777777776655443
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.7e-19 Score=164.03 Aligned_cols=189 Identities=14% Similarity=0.106 Sum_probs=128.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcc--
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGN-- 208 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~-- 208 (399)
.+|++++|+||||||||||+++|+|.+++..| .+.....+... ....++|+||++.++... ..++.+++.+...
T Consensus 4 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~-~~~~i~~v~q~~~~~~~~--~~tv~~~l~~~~~~~ 79 (223)
T TIGR03771 4 DKGELLGLLGPNGAGKTTLLRAILGLIPPAKG-TVKVAGASPGK-GWRHIGYVPQRHEFAWDF--PISVAHTVMSGRTGH 79 (223)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCccchH-hhCcEEEecccccccCCC--CccHHHHHHhccccc
Confidence 47999999999999999999999999999888 66554433221 234589999987543211 1155566544311
Q ss_pred --ccCCc----HHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHH
Q 015825 209 --LYGTS----VEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNA 281 (399)
Q Consensus 209 --~~g~~----~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~ 281 (399)
.+... ...+...++. +.....+-.+..+....+++...+.+++.+|+++++|||++++|+.+++.+.+.+.++
T Consensus 80 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~~l~~~l~~~ 159 (223)
T TIGR03771 80 IGWLRRPCVADFAAVRDALRRVGLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIEL 159 (223)
T ss_pred cccccCCcHHHHHHHHHHHHHhCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHH
Confidence 11111 1223333332 2211222222223333456667777999999999999999999999999999999876
Q ss_pred HHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 282 KEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 282 ~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
.++ ..++++++|+++++...+++++.+ +|+++..+++.++..
T Consensus 160 ~~~--------~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~ 201 (223)
T TIGR03771 160 AGA--------GTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQD 201 (223)
T ss_pred HHc--------CCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcC
Confidence 532 238899999999999889998888 788887776665543
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-19 Score=168.28 Aligned_cols=203 Identities=16% Similarity=0.098 Sum_probs=135.0
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC--C---cccceeeecCCCc------cccccCCeeEEecChHH
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP--S---MFGFSVSHTTRAP------RAMEKDGVHYHFTERSV 189 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~--~---~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~l 189 (399)
.+..+.+....+|++++|+||||||||||+++|+|..+ + ..| .+....... .......++|+||++.+
T Consensus 19 ~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (252)
T PRK14255 19 EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITG-NVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNP 97 (252)
T ss_pred eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCccc-EEEEcCEEcccccccHHHhcCeEEEEECCCcc
Confidence 34444445567999999999999999999999999864 3 367 444322111 11123468999999776
Q ss_pred HHHHHhhhhhHHHHHHhccccCC-cHH----HHHHHHHc-CCc-e---EEecchhhHHHHHcCCcceeEEEEcCCChHHH
Q 015825 190 MEKAIKDGKFLEFASVHGNLYGT-SVE----AVEAVADA-GKR-C---ILDIDVQGARSVRASPLDAIFIFICPPSMEEL 259 (399)
Q Consensus 190 f~~~~~~~~~~E~~~~~~~~~g~-~~~----~i~~~~~~-g~~-~---vldld~~g~~~l~~~~~~~~~ili~~P~lllL 259 (399)
|+ . ++.+++.+....++. ..+ .+.+.++. +.. . .++..+..+....+++...+.+++.+|++++|
T Consensus 98 ~~-~----tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~laral~~~p~llll 172 (252)
T PRK14255 98 FP-F----SIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILL 172 (252)
T ss_pred CC-C----cHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 65 3 566666553222221 111 11111211 110 0 01111111222345556667799999999999
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchh
Q 015825 260 EERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHS 338 (399)
Q Consensus 260 DEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~ 338 (399)
|||++++|+.+++.+.+.|+++.++ .++|+++|+++++...+++++.+.+|.++..+++.+.+..|....
T Consensus 173 DEPt~~LD~~~~~~l~~~l~~~~~~---------~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 242 (252)
T PRK14255 173 DEPTSALDPISSTQIENMLLELRDQ---------YTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLNPKEKE 242 (252)
T ss_pred cCCCccCCHHHHHHHHHHHHHHHhC---------CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCCCChH
Confidence 9999999999999999999886421 388999999999999999999999999988888777777765443
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.5e-19 Score=169.16 Aligned_cols=204 Identities=12% Similarity=0.090 Sum_probs=134.9
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC-----CcccceeeecCCCc------cccccCCeeEEecChHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRAP------RAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~-----~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf 190 (399)
+....+....+|++++|+||||||||||+++|+|+.. +..| .+....... .......++|+||++.+|
T Consensus 25 il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~ 103 (264)
T PRK14243 25 AVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEG-KVTFHGKNLYAPDVDPVEVRRRIGMVFQKPNPF 103 (264)
T ss_pred EeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCce-EEEECCEEccccccChHHHhhhEEEEccCCccc
Confidence 3344445567999999999999999999999999865 2567 444322111 111234589999987666
Q ss_pred HHHHhhhhhHHHHHHhccccCCc---HHHHHHHHHc-CCce----EEecchhhHHHHHcCCcceeEEEEcCCChHHHHHH
Q 015825 191 EKAIKDGKFLEFASVHGNLYGTS---VEAVEAVADA-GKRC----ILDIDVQGARSVRASPLDAIFIFICPPSMEELEER 262 (399)
Q Consensus 191 ~~~~~~~~~~E~~~~~~~~~g~~---~~~i~~~~~~-g~~~----vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEp 262 (399)
+ . ++.+++.+.....+.. .+.+...++. +... ..+..+..+....+++...+.+++.+|++++||||
T Consensus 104 ~-~----tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEP 178 (264)
T PRK14243 104 P-K----SIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEP 178 (264)
T ss_pred c-c----cHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 4 2 5666665532221111 1112222221 1100 01111111222345556667789999999999999
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc---------CCeeeecCCCccccCC
Q 015825 263 LRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD---------GSIATNHQTSPKGIDL 333 (399)
Q Consensus 263 l~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~---------~~~~~~~~~~~~~~~~ 333 (399)
++++|+.+++.+.+.|.++.++ .++|+++|+++++...+++++.+. .|.++..+++.+++..
T Consensus 179 t~~LD~~~~~~l~~~L~~~~~~---------~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~~~~ 249 (264)
T PRK14243 179 CSALDPISTLRIEELMHELKEQ---------YTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKIFNS 249 (264)
T ss_pred CccCCHHHHHHHHHHHHHHhcC---------CEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHHhC
Confidence 9999999999999999876421 388999999999999999999887 6888888888888777
Q ss_pred Ccchhhh
Q 015825 334 PADHSVS 340 (399)
Q Consensus 334 p~~~~v~ 340 (399)
|......
T Consensus 250 ~~~~~~~ 256 (264)
T PRK14243 250 PQQQATR 256 (264)
T ss_pred CCcHHHH
Confidence 7654433
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.3e-19 Score=167.32 Aligned_cols=198 Identities=11% Similarity=0.105 Sum_probs=131.4
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC----cccceeeecCCCc--cccccCCeeEEecChH-HHHHHHhhhhh
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS----MFGFSVSHTTRAP--RAMEKDGVHYHFTERS-VMEKAIKDGKF 199 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~----~~g~~i~~ttr~~--~~~~~~~i~yvfq~~~-lf~~~~~~~~~ 199 (399)
+....+|++++|+||||||||||+++|+|+.++ ..| .+.....+. .......++|+||++. .|.... ++
T Consensus 23 sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G-~i~~~g~~i~~~~~~~~~i~~v~q~~~~~~~~~~---~~ 98 (254)
T PRK10418 23 SLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAG-RVLLDGKPVAPCALRGRKIATIMQNPRSAFNPLH---TM 98 (254)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCC-EEEECCeeccccccccceEEEEecCCccccCccc---cH
Confidence 345569999999999999999999999999988 778 554322211 1111245899999864 232111 34
Q ss_pred HHHHHHhccccCCcH--HHHHHHHHc-CCce---EEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 200 LEFASVHGNLYGTSV--EAVEAVADA-GKRC---ILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 200 ~E~~~~~~~~~g~~~--~~i~~~~~~-g~~~---vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
.++..+....++... ..+.+.++. +... +++-.+..+....+++...+.+++.+|++++||||++++|+.+++.
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~ 178 (254)
T PRK10418 99 HTHARETCLALGKPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQAR 178 (254)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHH
Confidence 444332211122221 223333332 1110 1111111222234556667779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
+.+.|+++.++. ..++++++|+++++...+++++.+.+|.+...+++.++...|.
T Consensus 179 l~~~L~~~~~~~-------g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~ 233 (254)
T PRK10418 179 ILDLLESIVQKR-------ALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAPK 233 (254)
T ss_pred HHHHHHHHHHhc-------CcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCCC
Confidence 999998865431 2388999999999999999999999999988887777766554
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.7e-19 Score=168.76 Aligned_cols=198 Identities=13% Similarity=0.099 Sum_probs=132.6
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
+....+....+|++++|+||||||||||+++|+|++++..| .+....... .......++|++|++..+..+
T Consensus 16 il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~~~---- 90 (256)
T TIGR03873 16 IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAG-TVDLAGVDLHGLSRRARARRVALVEQDSDTAVPL---- 90 (256)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCC-EEEECCEEcccCCHHHHhhheEEecccCccCCCC----
Confidence 33334445569999999999999999999999999999888 554322111 111123589999987544433
Q ss_pred hhHHHHHHhcc----ccCCc----HHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCC
Q 015825 198 KFLEFASVHGN----LYGTS----VEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGT 268 (399)
Q Consensus 198 ~~~E~~~~~~~----~~g~~----~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~ 268 (399)
++.+++.+... .++.. .+.+.+.++. +.....+-.+..+....+++...+.+++..|++++||||++++|+
T Consensus 91 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~ 170 (256)
T TIGR03873 91 TVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDV 170 (256)
T ss_pred CHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCH
Confidence 67777655321 11111 1122222322 111111111112222344556667789999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 269 ETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 269 ~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
.+...+.+.|+++.++ ..++++++|+++.+...+++++.+.+|.++..+++.++..
T Consensus 171 ~~~~~l~~~l~~~~~~--------~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 171 RAQLETLALVRELAAT--------GVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHHHHHHHHHHhc--------CCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999886532 2388999999999999999999999999888777665543
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.3e-19 Score=183.35 Aligned_cols=197 Identities=14% Similarity=0.108 Sum_probs=136.2
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----cccccCCeeEEecChHHHHHHHh
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSVMEKAIK 195 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~lf~~~~~ 195 (399)
.+....++...+|++++|+||||||||||+++|+|+.+|..| .+....... ......+++|+||++.+++.+
T Consensus 19 ~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~-- 95 (510)
T PRK09700 19 HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKG-TITINNINYNKLDHKLAAQLGIGIIYQELSVIDEL-- 95 (510)
T ss_pred EEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCcc-EEEECCEECCCCCHHHHHHCCeEEEeecccccCCC--
Confidence 334444455679999999999999999999999999999888 554322111 111124589999997766654
Q ss_pred hhhhHHHHHHhcc----ccCC---cHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHH
Q 015825 196 DGKFLEFASVHGN----LYGT---SVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERL 263 (399)
Q Consensus 196 ~~~~~E~~~~~~~----~~g~---~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl 263 (399)
++.+++.+... .++. ... .+.+.++. +.....+-.+..+....++++..+.+++.+|++++||||+
T Consensus 96 --tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~ia~al~~~p~lllLDEPt 173 (510)
T PRK09700 96 --TVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPT 173 (510)
T ss_pred --cHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCCcccchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 67777655321 1221 111 22222222 1111122222333334566777788999999999999999
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccc
Q 015825 264 RARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKG 330 (399)
Q Consensus 264 ~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~ 330 (399)
+++|+.++..+.+.|+++.++ ..++|+++||++.+...+++++.+.+|.++..+++.++
T Consensus 174 ~~LD~~~~~~l~~~l~~l~~~--------g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 232 (510)
T PRK09700 174 SSLTNKEVDYLFLIMNQLRKE--------GTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDV 232 (510)
T ss_pred CCCCHHHHHHHHHHHHHHHhC--------CCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhC
Confidence 999999999999999987532 23889999999999999999999999988777665544
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-18 Score=165.93 Aligned_cols=201 Identities=13% Similarity=0.099 Sum_probs=130.6
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC-----cc---c-----cccCCeeEEecChHH
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA-----PR---A-----MEKDGVHYHFTERSV 189 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~-----~~---~-----~~~~~i~yvfq~~~l 189 (399)
..+.+....+|++++|+||||||||||+++|+|+.++..| .+.....+ .. . ....+++|+||++..
T Consensus 19 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 97 (253)
T TIGR02323 19 CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHG-TATYIMRSGAELELYQLSEAERRRLMRTEWGFVHQNPRD 97 (253)
T ss_pred eecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEEecccccccccccCCHHHHHHhhhcceEEEEeCccc
Confidence 3334455669999999999999999999999999999888 55443221 10 0 012458999998632
Q ss_pred --HHHHHhhhhhHHHHHHh----c-cccCCcHHHHHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHH
Q 015825 190 --MEKAIKDGKFLEFASVH----G-NLYGTSVEAVEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELE 260 (399)
Q Consensus 190 --f~~~~~~~~~~E~~~~~----~-~~~g~~~~~i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLD 260 (399)
+... ++.+++.+. . ..+......+.+.++. +.. ..++..+..+....+++...+.+++.+|++++||
T Consensus 98 ~~~~~~----~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv~laral~~~p~vlllD 173 (253)
T TIGR02323 98 GLRMRV----SAGANIGERLMAIGARHYGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMD 173 (253)
T ss_pred ccCccc----cHHHHHHHHHHHhcccchHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 1111 222332211 0 0111111222222222 110 0111112222223456667777999999999999
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 261 ERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 261 Epl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
||++++|+.+++.+.+.+.++..+. ..++|+++|+++++...+++++.+.+|.++..+++.++...|.
T Consensus 174 EP~~~LD~~~~~~l~~~l~~~~~~~-------~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~~~~~~~~~~ 241 (253)
T TIGR02323 174 EPTGGLDVSVQARLLDLLRGLVRDL-------GLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQ 241 (253)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECCHHHHhcCCC
Confidence 9999999999999999998765431 2388999999999998999999999999988777766665543
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.9e-19 Score=174.02 Aligned_cols=202 Identities=13% Similarity=0.075 Sum_probs=140.6
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC-----CcccceeeecCCCcc------ccccCCeeEEecChHHHHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRAPR------AMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~-----~~~g~~i~~ttr~~~------~~~~~~i~yvfq~~~lf~~~~ 194 (399)
.+....+|++++|+||||||||||+++|+|+.+ +..| .+........ ...+..++|+||++.+|.
T Consensus 101 is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G-~I~idG~~i~~~~~~~~~lr~~i~~v~q~~~~~~--- 176 (329)
T PRK14257 101 LNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEG-EIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFE--- 176 (329)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCce-EEEECCEEccccccchHhhhccEEEEecCCccCC---
Confidence 334556999999999999999999999999985 3467 4443222111 112346899999987663
Q ss_pred hhhhhHHHHHHhccccCCcHHH-----HHHHHHc-CCce----EEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHH
Q 015825 195 KDGKFLEFASVHGNLYGTSVEA-----VEAVADA-GKRC----ILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g~~~~~-----i~~~~~~-g~~~----vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~ 264 (399)
+++.+++.|.....+..... +...++. ++.. .++-....+...+++++..+.+++..|++++||||++
T Consensus 177 --~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl~LARAl~~~p~IlLLDEPts 254 (329)
T PRK14257 177 --MSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTS 254 (329)
T ss_pred --CcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEeCCcc
Confidence 27778887643322222221 2222222 1100 0111111122234566667779999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcc
Q 015825 265 ARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKV 342 (399)
Q Consensus 265 ~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~ 342 (399)
++|+.+...+++.|+.+.+ .+++++++|+++.+.+.+++++.+.+|.++..+++.+++..|....+..+
T Consensus 255 ~LD~~~~~~i~~~i~~l~~---------~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~~~~~~~~~~ 323 (329)
T PRK14257 255 ALDPIATAKIEELILELKK---------KYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHPKNKRTKDY 323 (329)
T ss_pred cCCHHHHHHHHHHHHHHhc---------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCCCcHHHHHH
Confidence 9999999999998887532 24899999999999988999999999999999999999999887665543
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-18 Score=164.69 Aligned_cols=195 Identities=13% Similarity=0.075 Sum_probs=128.6
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhcc--CCcccceeeecCCCc-----cccccCCeeEEecChHHHHHH
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEF--PSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSVMEKA 193 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~--~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~lf~~~ 193 (399)
.+..+.+....+|++++|+||||||||||+++|+|+. ++..| .+....... ......+++|+||++.+++.+
T Consensus 14 ~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 92 (243)
T TIGR01978 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSG-TILFKGQDLLELEPDERARAGLFLAFQYPEEIPGV 92 (243)
T ss_pred EEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcc-eEEECCEecCCCCHHHhhccceEeeeccccccCCc
Confidence 3344444556799999999999999999999999995 67788 554322211 111123478999998776654
Q ss_pred HhhhhhHHHHHHhccccC-------CcH----HHHHHHHHc-CCc-eEEecchh-hHHHHHcCCcceeEEEEcCCChHHH
Q 015825 194 IKDGKFLEFASVHGNLYG-------TSV----EAVEAVADA-GKR-CILDIDVQ-GARSVRASPLDAIFIFICPPSMEEL 259 (399)
Q Consensus 194 ~~~~~~~E~~~~~~~~~g-------~~~----~~i~~~~~~-g~~-~vldld~~-g~~~l~~~~~~~~~ili~~P~lllL 259 (399)
++.+++.+....+. ... +.+.+.++. +.. ...+..+. .+....+++...+.+++.+|++++|
T Consensus 93 ----t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llll 168 (243)
T TIGR01978 93 ----SNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAIL 168 (243)
T ss_pred ----CHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHHHHhcCCCEEEe
Confidence 55555443211110 111 112222222 111 11111111 1333345666677799999999999
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHH-HHHhhcccCCeeeecCCCc
Q 015825 260 EERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYEN-LKKHLGLDGSIATNHQTSP 328 (399)
Q Consensus 260 DEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~-l~~ii~~~~~~~~~~~~~~ 328 (399)
|||++++|+.+++.+.+.|.++.++ ..++++++|+++.+... +++++.+.+|.++..+++.
T Consensus 169 DEPt~~LD~~~~~~l~~~l~~~~~~--------~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (243)
T TIGR01978 169 DEIDSGLDIDALKIVAEGINRLREP--------DRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230 (243)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHC--------CcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHH
Confidence 9999999999999999999886431 23889999999999887 7999999999887766554
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.8e-19 Score=167.47 Aligned_cols=198 Identities=14% Similarity=0.078 Sum_probs=132.7
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-----cccceeeecCCCc------cccccCCeeEEecChHHHH
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAP------RAMEKDGVHYHFTERSVME 191 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-----~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf~ 191 (399)
....+....+|++++|+||||||||||+++|+|+.++ ..| .+....... .......++|+||++.+|+
T Consensus 19 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G-~i~i~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~ 97 (250)
T PRK14262 19 VKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEG-KIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFP 97 (250)
T ss_pred EeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcce-EEEECCEEcccchhhHHHhhhhEEEEecCCccCc
Confidence 3334455669999999999999999999999999863 567 454322111 1112346899999977665
Q ss_pred HHHhhhhhHHHHHHhccccCC-cHHH----HHHHHHc-CCce----EEecchhhHHHHHcCCcceeEEEEcCCChHHHHH
Q 015825 192 KAIKDGKFLEFASVHGNLYGT-SVEA----VEAVADA-GKRC----ILDIDVQGARSVRASPLDAIFIFICPPSMEELEE 261 (399)
Q Consensus 192 ~~~~~~~~~E~~~~~~~~~g~-~~~~----i~~~~~~-g~~~----vldld~~g~~~l~~~~~~~~~ili~~P~lllLDE 261 (399)
. ++.+++.+....++. .... +...++. +... ..+..+..+....+++...+.+++.+|++++|||
T Consensus 98 -~----tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~al~~~p~llllDE 172 (250)
T PRK14262 98 -M----SIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDE 172 (250)
T ss_pred -c----cHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHHHHhCCCCEEEEeC
Confidence 3 666776553222222 1111 2222221 1100 0111111122224556667779999999999999
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 262 RLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 262 pl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
|++++|+.++..+.+.|.++.+ ..++++++|+++.+...+++++.+.+|.++..+++.++...|.
T Consensus 173 P~~~LD~~~~~~l~~~l~~~~~---------~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 237 (250)
T PRK14262 173 PTSALDPIATQRIEKLLEELSE---------NYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVERPK 237 (250)
T ss_pred CccccCHHHHHHHHHHHHHHhc---------CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCCC
Confidence 9999999999999999987642 1388999999999999999999999999988887776665553
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.6e-19 Score=184.10 Aligned_cols=198 Identities=12% Similarity=0.006 Sum_probs=132.0
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhcc--CCcccceeeec-----------------------CC-----
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEF--PSMFGFSVSHT-----------------------TR----- 170 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~--~~~~g~~i~~t-----------------------tr----- 170 (399)
.+....+....+|++++|+||||||||||+++|+|+. ++..| .+... ..
T Consensus 14 ~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G-~i~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~ 92 (520)
T TIGR03269 14 EVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSG-RIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPE 92 (520)
T ss_pred EeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCce-EEEEecccccccccccccccccccccccccccccc
Confidence 3333344556799999999999999999999999996 57777 44321 00
Q ss_pred -----C-c---cccccCCeeEEecC-hHHHHHHHhhhhhHHHHHHhccccCCcHHHH----HHHHHc-CCceEEecchhh
Q 015825 171 -----A-P---RAMEKDGVHYHFTE-RSVMEKAIKDGKFLEFASVHGNLYGTSVEAV----EAVADA-GKRCILDIDVQG 235 (399)
Q Consensus 171 -----~-~---~~~~~~~i~yvfq~-~~lf~~~~~~~~~~E~~~~~~~~~g~~~~~i----~~~~~~-g~~~vldld~~g 235 (399)
. . ....+..++|+||+ ..+|+.+ ++.+++.+....++.+.... .+.++. +.....+-.+..
T Consensus 93 ~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~----tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~ 168 (520)
T TIGR03269 93 EVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDD----TVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIARD 168 (520)
T ss_pred chhhhccCHHHHHHhhhcEEEEeccccccCCCC----CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhcCccc
Confidence 0 0 00112358999997 4555544 56666655333233332222 222222 111111111222
Q ss_pred HHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhc
Q 015825 236 ARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 236 ~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~ 315 (399)
+....+++...+.+++.+|++++||||++++|+.+.+.+.+.|+++.++. ..++++++||++.+...+++++.
T Consensus 169 LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~-------g~tviivtHd~~~~~~~~d~i~~ 241 (520)
T TIGR03269 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKAS-------GISMVLTSHWPEVIEDLSDKAIW 241 (520)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhc-------CcEEEEEeCCHHHHHHhcCEEEE
Confidence 23334566777789999999999999999999999999999999875432 23889999999999999999999
Q ss_pred ccCCeeeecCCCccc
Q 015825 316 LDGSIATNHQTSPKG 330 (399)
Q Consensus 316 ~~~~~~~~~~~~~~~ 330 (399)
+.+|.++..+++.++
T Consensus 242 l~~G~i~~~g~~~~~ 256 (520)
T TIGR03269 242 LENGEIKEEGTPDEV 256 (520)
T ss_pred EeCCEEeeecCHHHH
Confidence 999988766655443
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.8e-19 Score=168.42 Aligned_cols=211 Identities=12% Similarity=0.057 Sum_probs=141.3
Q ss_pred HHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceee------ecCCC----ccccccCCeeEEe
Q 015825 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS------HTTRA----PRAMEKDGVHYHF 184 (399)
Q Consensus 115 ~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~------~ttr~----~~~~~~~~i~yvf 184 (399)
+.+|-..+..+.+....+|++++|+||||||||||+++|+|..++..| .+. ..... .......+++|+|
T Consensus 18 ~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G-~v~~~G~~~~~g~~~~~~~~~~~~~~i~~~~ 96 (257)
T PRK14246 18 LYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDS-KIKVDGKVLYFGKDIFQIDAIKLRKEVGMVF 96 (257)
T ss_pred EecCCceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcC-ceeEcCEEEECCcccccCCHHHHhcceEEEc
Confidence 334444444445555679999999999999999999999999988776 222 11111 1111234689999
Q ss_pred cChHHHHHHHhhhhhHHHHHHhccccC-CcHHHH----HHHHHc-CCce----EEecchhhHHHHHcCCcceeEEEEcCC
Q 015825 185 TERSVMEKAIKDGKFLEFASVHGNLYG-TSVEAV----EAVADA-GKRC----ILDIDVQGARSVRASPLDAIFIFICPP 254 (399)
Q Consensus 185 q~~~lf~~~~~~~~~~E~~~~~~~~~g-~~~~~i----~~~~~~-g~~~----vldld~~g~~~l~~~~~~~~~ili~~P 254 (399)
|++.+|+.+ ++.+++.+.....+ ...+.. ...++. +... ..+-.+..+....+++...+.+++.+|
T Consensus 97 q~~~~~~~~----tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~laral~~~P 172 (257)
T PRK14246 97 QQPNPFPHL----SIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIARALALKP 172 (257)
T ss_pred cCCccCCCC----cHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 998776554 66676665422112 122222 222222 1110 011111122223455666777999999
Q ss_pred ChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 255 SMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 255 ~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
++++||||++++|..++..+.+.+.++.. .+++++++|+.+.+...+++++.+.+|++...+++.++...|
T Consensus 173 ~llllDEPt~~LD~~~~~~l~~~l~~~~~---------~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~~~ 243 (257)
T PRK14246 173 KVLLMDEPTSMIDIVNSQAIEKLITELKN---------EIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSP 243 (257)
T ss_pred CEEEEcCCCccCCHHHHHHHHHHHHHHhc---------CcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 99999999999999999999999987632 248999999999999999999999999998888877777766
Q ss_pred cchhh
Q 015825 335 ADHSV 339 (399)
Q Consensus 335 ~~~~v 339 (399)
.....
T Consensus 244 ~~~~~ 248 (257)
T PRK14246 244 KNELT 248 (257)
T ss_pred CcHHH
Confidence 54443
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=7.4e-19 Score=167.08 Aligned_cols=200 Identities=12% Similarity=0.098 Sum_probs=133.2
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-----cccceeeecCCCc------cccccCCeeEEecChHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAP------RAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-----~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf 190 (399)
+..+.+....+|++++|+||||||||||+++|+|+..+ ..| .+....... ......+++|+||++.+|
T Consensus 21 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~ 99 (253)
T PRK14261 21 ALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITG-DILYNGENIMDSGADVVALRRKIGMVFQRPNPF 99 (253)
T ss_pred eeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcce-EEEECCEEccccccchhhhhceEEEEecCCccC
Confidence 34444455669999999999999999999999998652 357 443321111 111234689999998766
Q ss_pred HHHHhhhhhHHHHHHhccccCC-cHH----HHHHHHHc-CCc----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHH
Q 015825 191 EKAIKDGKFLEFASVHGNLYGT-SVE----AVEAVADA-GKR----CILDIDVQGARSVRASPLDAIFIFICPPSMEELE 260 (399)
Q Consensus 191 ~~~~~~~~~~E~~~~~~~~~g~-~~~----~i~~~~~~-g~~----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLD 260 (399)
+ . ++.+++.+....++. ... .+.+.++. +.. ..++-....+....+++...+.+++.+|++++||
T Consensus 100 ~-~----tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLD 174 (253)
T PRK14261 100 P-K----SIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMD 174 (253)
T ss_pred c-c----cHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 4 2 666776654332221 111 12222221 110 0011111112223455566777999999999999
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcc
Q 015825 261 ERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPAD 336 (399)
Q Consensus 261 Epl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~ 336 (399)
||++++|+.+++.+.+.+.++.+. .++++++|+++++...+++++.+.+|+++..+++.++...|..
T Consensus 175 EP~~gLD~~~~~~l~~~l~~~~~~---------~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~ 241 (253)
T PRK14261 175 EPCSALDPIATAKIEDLIEDLKKE---------YTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENPHE 241 (253)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhC---------ceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHhCCCc
Confidence 999999999999999888876421 3889999999999999999999999999888877777666543
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=9.8e-19 Score=166.04 Aligned_cols=198 Identities=14% Similarity=0.118 Sum_probs=132.3
Q ss_pred eccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC-----CcccceeeecCCCc------cccccCCeeEEecChHHHHH
Q 015825 124 WSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRAP------RAMEKDGVHYHFTERSVMEK 192 (399)
Q Consensus 124 ~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~-----~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf~~ 192 (399)
.+.++...+|++++|+||||||||||+++|+|+.+ +..| .+....... .......++|+||++.+|+.
T Consensus 22 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~~~~~ 100 (251)
T PRK14244 22 FDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKG-ELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPK 100 (251)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcce-EEEECCEehHhcccchHHHhhhEEEEecCcccccC
Confidence 33444556999999999999999999999999975 3567 554322111 01123468999999766642
Q ss_pred HHhhhhhHHHHHHhccccCC--cHH----HHHHHHHc-CCce----EEecchhhHHHHHcCCcceeEEEEcCCChHHHHH
Q 015825 193 AIKDGKFLEFASVHGNLYGT--SVE----AVEAVADA-GKRC----ILDIDVQGARSVRASPLDAIFIFICPPSMEELEE 261 (399)
Q Consensus 193 ~~~~~~~~E~~~~~~~~~g~--~~~----~i~~~~~~-g~~~----vldld~~g~~~l~~~~~~~~~ili~~P~lllLDE 261 (399)
++.+++.+....++. ... .+.+.++. +..- .++..+..+....+++...+.+++.+|++++|||
T Consensus 101 -----tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllDE 175 (251)
T PRK14244 101 -----SIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDE 175 (251)
T ss_pred -----CHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 455665543222221 111 12222222 1110 0111112222234566667779999999999999
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcc
Q 015825 262 RLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPAD 336 (399)
Q Consensus 262 pl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~ 336 (399)
|++++|+.+++.+.+.|.++.. ..++++++|+++++...+++++.+.+|.++..+++.++...|..
T Consensus 176 Pt~~LD~~~~~~l~~~l~~~~~---------~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 241 (251)
T PRK14244 176 PCSALDPVATNVIENLIQELKK---------NFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQS 241 (251)
T ss_pred CCccCCHHHHHHHHHHHHHHhc---------CCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhcCCCC
Confidence 9999999999999998887631 23899999999999999999999999999888877777666543
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=8.7e-19 Score=167.28 Aligned_cols=200 Identities=13% Similarity=0.062 Sum_probs=134.3
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-----cccceeeecCCCc------cccccCCeeEEecChHHHHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAP------RAMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-----~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf~~~~ 194 (399)
.+....+|++++|+|+||||||||+++|+|++++ ..| .+....... ......+++|+||++.+|+ .
T Consensus 26 isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~- 102 (259)
T PRK14260 26 ISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEG-VVDFFGQNIYDPRININRLRRQIGMVFQRPNPFP-M- 102 (259)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccce-EEEECCEeccccccchHhhhhheEEEecccccCC-c-
Confidence 3345569999999999999999999999999874 357 444322111 0112346899999987665 3
Q ss_pred hhhhhHHHHHHhccccC-CcHH----HHHHHHHc-CCc----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHH
Q 015825 195 KDGKFLEFASVHGNLYG-TSVE----AVEAVADA-GKR----CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g-~~~~----~i~~~~~~-g~~----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~ 264 (399)
++.+++.+....++ .+.. .+.+.+.. +.. ..++-.+..+....+++...+.+++.+|++++||||++
T Consensus 103 ---tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lllLDEPt~ 179 (259)
T PRK14260 103 ---SIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCS 179 (259)
T ss_pred ---cHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCCc
Confidence 67777655322221 1111 12222222 110 01111111222234555666778999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc-----CCeeeecCCCccccCCCcchhh
Q 015825 265 ARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD-----GSIATNHQTSPKGIDLPADHSV 339 (399)
Q Consensus 265 ~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~-----~~~~~~~~~~~~~~~~p~~~~v 339 (399)
++|+.++..+.+.|.++.+ ..++++++|+++++...+++++.+. +|.++..+++.+++..|....+
T Consensus 180 ~LD~~~~~~l~~~l~~~~~---------~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~~~~~~~~~ 250 (259)
T PRK14260 180 ALDPIATMKVEELIHSLRS---------ELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIFSNPLDSRT 250 (259)
T ss_pred cCCHHHHHHHHHHHHHHhc---------CCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHHhcCCCChHH
Confidence 9999999999999988642 1388999999999999999998886 4888888888877766655444
Q ss_pred h
Q 015825 340 S 340 (399)
Q Consensus 340 ~ 340 (399)
.
T Consensus 251 ~ 251 (259)
T PRK14260 251 R 251 (259)
T ss_pred H
Confidence 3
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=99.73 E-value=5.2e-19 Score=165.33 Aligned_cols=184 Identities=15% Similarity=0.093 Sum_probs=123.5
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccC---CcccceeeecCCCcc-ccccCCeeEEecChHHHHHHHhhhhhHHH
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFP---SMFGFSVSHTTRAPR-AMEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~---~~~g~~i~~ttr~~~-~~~~~~i~yvfq~~~lf~~~~~~~~~~E~ 202 (399)
+....+|++++|+||||||||||+++|+|.++ +..| .+........ ......++|+||++.+|+.+ ++.++
T Consensus 27 sl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G-~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~----tv~en 101 (226)
T cd03234 27 SLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSG-QILFNGQPRKPDQFQKCVAYVRQDDILLPGL----TVRET 101 (226)
T ss_pred eEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCce-EEEECCEECChHHhcccEEEeCCCCccCcCC----cHHHH
Confidence 34556999999999999999999999999998 7788 4443222111 12234689999998777655 67777
Q ss_pred HHHhccccC---CcHHH----HHH-HHHcC-CceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 203 ASVHGNLYG---TSVEA----VEA-VADAG-KRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 203 ~~~~~~~~g---~~~~~----i~~-~~~~g-~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
+.+...... ..... +.. .++.. ...+.+-.+..+....+++...+.+++.+|++++||||++++|+.++..
T Consensus 102 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~illlDEP~~gLD~~~~~~ 181 (226)
T cd03234 102 LTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALN 181 (226)
T ss_pred HHHHHHhhcccccchHHHHHHHHHHHHHhhcchhhhcccccCcCHHHHHHHHHHHHHHhCCCEEEEeCCCcCCCHHHHHH
Confidence 765432211 11111 111 11111 1001111111122223455566678899999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCH-HHHHHHHHHhhcccCCeeee
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKL-EECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdl-eea~~~l~~ii~~~~~~~~~ 323 (399)
+.+.+.++.++ ..++++++|++ +++...+++++.+.+|+++.
T Consensus 182 ~~~~l~~~~~~--------~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~ 224 (226)
T cd03234 182 LVSTLSQLARR--------NRIVILTIHQPRSDLFRLFDRILLLSSGEIVY 224 (226)
T ss_pred HHHHHHHHHHC--------CCEEEEEecCCCHHHHHhCCEEEEEeCCEEEe
Confidence 99999876432 23889999998 68999999999999887764
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.1e-18 Score=167.79 Aligned_cols=199 Identities=12% Similarity=0.069 Sum_probs=129.9
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCc--------ccceeeecCCCcc----ccccCCeeEEecChHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM--------FGFSVSHTTRAPR----AMEKDGVHYHFTERSV 189 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~--------~g~~i~~ttr~~~----~~~~~~i~yvfq~~~l 189 (399)
+....+....+|++++|+||||||||||+++|+|++++. .| .+........ ......++|+||++..
T Consensus 16 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~v~q~~~~ 94 (272)
T PRK13547 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTG-DVTLNGEPLAAIDAPRLARLRAVLPQAAQP 94 (272)
T ss_pred EEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCce-EEEECCEEcccCCHHHHHhhcEEecccCCC
Confidence 333344556699999999999999999999999999886 67 5544322111 1112246899998654
Q ss_pred HHHHHhhhhhHHHHHHhcccc----CC-cH---HHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEE---------
Q 015825 190 MEKAIKDGKFLEFASVHGNLY----GT-SV---EAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFI--------- 251 (399)
Q Consensus 190 f~~~~~~~~~~E~~~~~~~~~----g~-~~---~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili--------- 251 (399)
+..+ ++.+++.+....+ +. .. ..+...++. +....++-.+..+....++++..+.+++
T Consensus 95 ~~~~----tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~~~~~~~~ 170 (272)
T PRK13547 95 AFAF----SAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAA 170 (272)
T ss_pred CCCC----cHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHHHHhccccccccC
Confidence 3333 6677765532111 10 11 112222222 1111111111112222345555666777
Q ss_pred cCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 252 CPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 252 ~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
.+|++++||||++++|+.+++.+.+.++++.++. ..++++++|+++++...+++++.+.+|.++..+++.++.
T Consensus 171 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~-------~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 243 (272)
T PRK13547 171 QPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDW-------NLGVLAIVHDPNLAARHADRIAMLADGAIVAHGAPADVL 243 (272)
T ss_pred CCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhc-------CCEEEEEECCHHHHHHhCCEEEEEECCeEEEecCHHHHc
Confidence 5899999999999999999999999999875432 238899999999998899999999999988777666554
Q ss_pred C
Q 015825 332 D 332 (399)
Q Consensus 332 ~ 332 (399)
.
T Consensus 244 ~ 244 (272)
T PRK13547 244 T 244 (272)
T ss_pred C
Confidence 4
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.5e-18 Score=161.58 Aligned_cols=186 Identities=15% Similarity=0.148 Sum_probs=125.0
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------ccccCCeeEEecChHHHHHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~~i~yvfq~~~lf~~~~ 194 (399)
+....++...+|++++|+||||||||||+++|+|.+++..| .+........ .....+++|+||++.+|+..
T Consensus 20 il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~- 97 (220)
T TIGR02982 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEG-SLKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFL- 97 (220)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCEEhHhcCHhHHHHHHhheEEEcCChhhcCCC-
Confidence 33333445568999999999999999999999999999888 5543222111 11235689999998777644
Q ss_pred hhhhhHHHHHHhccccC-CcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCC
Q 015825 195 KDGKFLEFASVHGNLYG-TSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGT 268 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g-~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~ 268 (399)
++.++..+....+. ...+. +.+.++. +.....+..+..+....+++...+.+++.+|++++||||++++|.
T Consensus 98 ---t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrv~laral~~~p~illlDEP~~~LD~ 174 (220)
T TIGR02982 98 ---TARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDS 174 (220)
T ss_pred ---CHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCcCCH
Confidence 67777765443332 22222 2222222 111111112222222345566677799999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCe
Q 015825 269 ETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSI 320 (399)
Q Consensus 269 ~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~ 320 (399)
.+++.+.+.|+++.++. ..++++++|+++ ....+++++.+.+|.
T Consensus 175 ~~~~~l~~~l~~~~~~~-------~~tii~~sh~~~-~~~~~d~v~~l~~g~ 218 (220)
T TIGR02982 175 KSGRDVVELMQKLAREQ-------GCTILIVTHDNR-ILDVADRIVHMEDGK 218 (220)
T ss_pred HHHHHHHHHHHHHHHHc-------CCEEEEEeCCHH-HHhhCCEEEEEECCE
Confidence 99999999998875432 248999999997 457888888887764
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.2e-18 Score=166.56 Aligned_cols=203 Identities=12% Similarity=0.072 Sum_probs=135.4
Q ss_pred CCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-----cccceeeecCCCc------cccccCCeeEEecC
Q 015825 118 GAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAP------RAMEKDGVHYHFTE 186 (399)
Q Consensus 118 g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-----~~g~~i~~ttr~~------~~~~~~~i~yvfq~ 186 (399)
+-..+....+....+|++++|+||||||||||+++|+|+++| ..| .+....... .......++|+||+
T Consensus 19 ~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~i~~v~q~ 97 (261)
T PRK14263 19 GNFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEG-HVHFLGQDVYGKGVDPVVVRRYIGMVFQQ 97 (261)
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCce-EEEECCEeccccccchHhhhhceEEEecC
Confidence 333444444456679999999999999999999999999875 567 554322111 11223468999999
Q ss_pred hHHHHHHHhhhhhHHHHHHhccccCCc---HHHHHHHHHcC-CceE----EecchhhHHHHHcCCcceeEEEEcCCChHH
Q 015825 187 RSVMEKAIKDGKFLEFASVHGNLYGTS---VEAVEAVADAG-KRCI----LDIDVQGARSVRASPLDAIFIFICPPSMEE 258 (399)
Q Consensus 187 ~~lf~~~~~~~~~~E~~~~~~~~~g~~---~~~i~~~~~~g-~~~v----ldld~~g~~~l~~~~~~~~~ili~~P~lll 258 (399)
+.+|. + ++.+++.+....++.. ...+.+.++.. +... .+-.+..+....+++...+.+++.+|++++
T Consensus 98 ~~~~~-~----tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 172 (261)
T PRK14263 98 PNPFS-M----SIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAIATEPEVLL 172 (261)
T ss_pred Ccccc-c----cHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 76653 3 6777776543322211 12233333321 1000 000011112223455566678899999999
Q ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc--------CCeeeecCCCccc
Q 015825 259 LEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD--------GSIATNHQTSPKG 330 (399)
Q Consensus 259 LDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~--------~~~~~~~~~~~~~ 330 (399)
||||++++|+.++..+.+.+.++.+ ..++++++|+++++...+++++.+. +|+++..+++.++
T Consensus 173 lDEPtsgLD~~~~~~l~~~l~~~~~---------~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~ 243 (261)
T PRK14263 173 LDEPCSALDPIATRRVEELMVELKK---------DYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQI 243 (261)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHhc---------CCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCHHHH
Confidence 9999999999999999999987631 1388899999999999999999985 7888888887777
Q ss_pred cCCCc
Q 015825 331 IDLPA 335 (399)
Q Consensus 331 ~~~p~ 335 (399)
+..|.
T Consensus 244 ~~~~~ 248 (261)
T PRK14263 244 FQNPR 248 (261)
T ss_pred HhCCC
Confidence 66654
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-18 Score=165.29 Aligned_cols=191 Identities=14% Similarity=0.109 Sum_probs=128.7
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHH
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~ 202 (399)
....++...+|++++|+||||||||||+++|+|+.++..| .+.... ...++|+||++.+++.+. .++.++
T Consensus 20 l~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G-~i~~~~-------~~~i~~v~q~~~~~~~l~--~~~~~~ 89 (251)
T PRK09544 20 LSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEG-VIKRNG-------KLRIGYVPQKLYLDTTLP--LTVNRF 89 (251)
T ss_pred EEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECC-------ccCEEEeccccccccccC--hhHHHH
Confidence 3334455569999999999999999999999999999888 554322 124899999875544320 133344
Q ss_pred HHHhccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHH
Q 015825 203 ASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNA 281 (399)
Q Consensus 203 ~~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~ 281 (399)
..+. .+.....+...++. +....++..+..+....+++...+.+++.+|++++||||++++|+.++..+.+.|.++
T Consensus 90 ~~~~---~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~ 166 (251)
T PRK09544 90 LRLR---PGTKKEDILPALKRVQAGHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQL 166 (251)
T ss_pred Hhcc---ccccHHHHHHHHHHcCChHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 3221 11222333333322 1111111112222223455666777899999999999999999999999999999886
Q ss_pred HHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 282 KEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 282 ~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
.++. ..++|+++|+++++...+++++.+.+ .++..+++.++...|
T Consensus 167 ~~~~-------g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g~~~~~~~~~ 211 (251)
T PRK09544 167 RREL-------DCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSGTPEVVSLHP 211 (251)
T ss_pred HHhc-------CCEEEEEecCHHHHHHhCCEEEEECC-ceEeeCCHHHHhCCH
Confidence 5432 23889999999999999999988865 566667766665544
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-18 Score=167.05 Aligned_cols=204 Identities=15% Similarity=0.096 Sum_probs=135.3
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-----cccceeeecCCCc------cccccCCeeEEecChHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAP------RAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-----~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf 190 (399)
+..+.++...+|++++|+||||||||||+++|+|+.++ ..| .+....... .......++|+||+..+|
T Consensus 40 il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G-~i~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 118 (272)
T PRK14236 40 ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEG-EIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPF 118 (272)
T ss_pred EeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCce-EEEECCEECcccccCHHHHhccEEEEecCCccC
Confidence 33334455569999999999999999999999999763 577 443321111 111234689999987666
Q ss_pred HHHHhhhhhHHHHHHhccccCC-cH----HHHHHHHHc-CCc----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHH
Q 015825 191 EKAIKDGKFLEFASVHGNLYGT-SV----EAVEAVADA-GKR----CILDIDVQGARSVRASPLDAIFIFICPPSMEELE 260 (399)
Q Consensus 191 ~~~~~~~~~~E~~~~~~~~~g~-~~----~~i~~~~~~-g~~----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLD 260 (399)
+ . ++.+++.+....++. .. ..+.+.++. +.. ..++..+..+....+++...+.+++.+|++++||
T Consensus 119 ~-~----tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~laral~~~p~lllLD 193 (272)
T PRK14236 119 P-K----SIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVIARAIAIEPEVLLLD 193 (272)
T ss_pred c-c----cHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHHHHHHHCCCCEEEEe
Confidence 4 2 556666543222221 11 112222221 110 0011111112223455566677899999999999
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 261 ERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 261 Epl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
||++++|+.++..+.+.+.++.+ + .++++++|+++++...+++++.+.+|.++..+++.++...|....+.
T Consensus 194 EPt~gLD~~~~~~l~~~L~~~~~--~-------~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~ 264 (272)
T PRK14236 194 EPTSALDPISTLKIEELITELKS--K-------YTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLFTSPAKKQTE 264 (272)
T ss_pred CCcccCCHHHHHHHHHHHHHHHh--C-------CeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHhcCCCcHHHH
Confidence 99999999999999999988642 1 28899999999999999999999999998888777776666544444
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-18 Score=168.95 Aligned_cols=200 Identities=13% Similarity=0.138 Sum_probs=133.6
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC-----CcccceeeecCCCc------cccccCCeeEEecChHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRAP------RAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~-----~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf 190 (399)
+..+.+....+|++++|+||||||||||+++|+|+.+ +..| .+....... ......+++|+||++.+|
T Consensus 54 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G-~I~~~g~~i~~~~~~~~~~~~~i~~v~q~~~l~ 132 (286)
T PRK14275 54 AVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTG-ALMFDGEDIYGKFTDEVLLRKKIGMVFQKPNPF 132 (286)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCce-EEEECCEEhhhcccchHHhhhcEEEECCCCCCC
Confidence 3333445566999999999999999999999999753 3677 444322111 111234689999997665
Q ss_pred HHHHhhhhhHHHHHHhccccCCc-HH----HHHHHHHc-CCc----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHH
Q 015825 191 EKAIKDGKFLEFASVHGNLYGTS-VE----AVEAVADA-GKR----CILDIDVQGARSVRASPLDAIFIFICPPSMEELE 260 (399)
Q Consensus 191 ~~~~~~~~~~E~~~~~~~~~g~~-~~----~i~~~~~~-g~~----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLD 260 (399)
+ . ++.+++.+....++.. .. .+.+.++. +.. ..++-.+..+....++++..+.+++.+|++++||
T Consensus 133 ~-~----tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLD 207 (286)
T PRK14275 133 P-K----SIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVARTLAVEPEILLLD 207 (286)
T ss_pred c-c----CHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 4 2 6777776543222221 11 12222221 110 0111111122223456666777999999999999
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcc
Q 015825 261 ERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPAD 336 (399)
Q Consensus 261 Epl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~ 336 (399)
||++++|+.+.+.+.+.|+++.. ..++++++|+++++...+++++.+.+|.+...+++.++...|..
T Consensus 208 EPt~gLD~~~~~~l~~~L~~~~~---------~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~~~~~~ 274 (286)
T PRK14275 208 EPTSALDPKATAKIEDLIQELRG---------SYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTNPKD 274 (286)
T ss_pred CCCccCCHHHHHHHHHHHHHHhc---------CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCc
Confidence 99999999999999988887532 13889999999999999999999999999888877776665543
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-18 Score=179.86 Aligned_cols=195 Identities=13% Similarity=0.117 Sum_probs=134.2
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----cccccCCeeEEecChHHHHHHHhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSVMEKAIKD 196 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~lf~~~~~~ 196 (399)
+....+....+|++++|+||||||||||+++|+|+++|..| .+....... .......++|+||++.+++.+
T Consensus 13 il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~--- 88 (491)
T PRK10982 13 ALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSG-SILFQGKEIDFKSSKEALENGISMVHQELNLVLQR--- 88 (491)
T ss_pred eeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCce-EEEECCEECCCCCHHHHHhCCEEEEecccccccCC---
Confidence 33334455669999999999999999999999999999888 554332211 111134689999997666554
Q ss_pred hhhHHHHHHhcc-ccC--CcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCC
Q 015825 197 GKFLEFASVHGN-LYG--TSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGT 268 (399)
Q Consensus 197 ~~~~E~~~~~~~-~~g--~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~ 268 (399)
++.+++.+... ..+ .... .+.+.++. +.....+-.+..+....++++..+.+++.+|++++||||++++|+
T Consensus 89 -tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lA~al~~~p~lllLDEPt~~LD~ 167 (491)
T PRK10982 89 -SVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTE 167 (491)
T ss_pred -CHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCCccCchhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCH
Confidence 77777665321 111 1112 12222222 111112222223333456677777899999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcc
Q 015825 269 ETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPK 329 (399)
Q Consensus 269 ~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~ 329 (399)
.+.+.+.+.+.++.++ ..++++++|+++++...+++++.+.+|.++..+++.+
T Consensus 168 ~~~~~l~~~l~~l~~~--------g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 220 (491)
T PRK10982 168 KEVNHLFTIIRKLKER--------GCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAG 220 (491)
T ss_pred HHHHHHHHHHHHHHhC--------CCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhh
Confidence 9999999998886421 2388999999999999999999999998887665543
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.3e-18 Score=168.54 Aligned_cols=202 Identities=13% Similarity=0.113 Sum_probs=132.2
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC-----CcccceeeecCCCc------cccccCCeeEEecChHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRAP------RAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~-----~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf 190 (399)
+....++...+|++++|+||||||||||+++|+|+++ +..| .+....... .......++|+||++.+|
T Consensus 54 il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G-~I~i~G~~i~~~~~~~~~~~~~i~~v~q~~~l~ 132 (285)
T PRK14254 54 ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEG-ELTFRGKNVYDADVDPVALRRRIGMVFQKPNPF 132 (285)
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCce-EEEECCEEccccccchHhhhccEEEEecCCccC
Confidence 3333445556899999999999999999999999986 4677 444321111 111234689999997655
Q ss_pred HHHHhhhhhHHHHHHhccccCCcH---HHHHHHHHc-CCc----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHH
Q 015825 191 EKAIKDGKFLEFASVHGNLYGTSV---EAVEAVADA-GKR----CILDIDVQGARSVRASPLDAIFIFICPPSMEELEER 262 (399)
Q Consensus 191 ~~~~~~~~~~E~~~~~~~~~g~~~---~~i~~~~~~-g~~----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEp 262 (399)
+ . ++.+++.+.....+... ..+.+.++. +.. ..++..+..+....++++..+.+++.+|++++||||
T Consensus 133 ~-~----tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe~qrv~LAraL~~~p~lLLLDEP 207 (285)
T PRK14254 133 P-K----SIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEP 207 (285)
T ss_pred c-C----CHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 4 2 56666654322222221 122222222 110 001111112222345666677799999999999999
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhh-cccCCeeeecCCCccccCCCcchh
Q 015825 263 LRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHL-GLDGSIATNHQTSPKGIDLPADHS 338 (399)
Q Consensus 263 l~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii-~~~~~~~~~~~~~~~~~~~p~~~~ 338 (399)
++++|+.+++.+.+.|+++.++ .++|+++|+++.+...+++++ .+.+|.++..+.+.+++..+....
T Consensus 208 ts~LD~~~~~~l~~~L~~~~~~---------~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~~~~~~~~ 275 (285)
T PRK14254 208 ASALDPVATSKIEDLIEELAEE---------YTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFENPESQR 275 (285)
T ss_pred CCCCCHHHHHHHHHHHHHHhcC---------CEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHHhCcCCHH
Confidence 9999999999999988876421 288999999999998899864 568888887777666665554433
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.2e-19 Score=165.04 Aligned_cols=189 Identities=17% Similarity=0.168 Sum_probs=127.6
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
.+....+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||++.+|+ . ++.+
T Consensus 21 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~----tv~~ 94 (237)
T cd03252 21 ISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENG-RVLVDGHDLALADPAWLRRQVGVVLQENVLFN-R----SIRD 94 (237)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC-EEEECCeehHhcCHHHHhhcEEEEcCCchhcc-c----hHHH
Confidence 3344568999999999999999999999999999888 554432211 1111345899999976553 2 6777
Q ss_pred HHHHhccccCCcHHHHHHHHHc-CCce-----------EEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 202 FASVHGNLYGTSVEAVEAVADA-GKRC-----------ILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~-g~~~-----------vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
++.+... +.....+....+. +... .++-.+..+....+++...+.+++.+|++++||||++++|+.
T Consensus 95 nl~~~~~--~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~~LD~~ 172 (237)
T cd03252 95 NIALADP--GMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYE 172 (237)
T ss_pred HhhccCC--CCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHH
Confidence 7765322 1222222221111 1100 001111122223455666677999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+++.+.+.|.++.+ ..++++++|+++++. .+++++.+.+|.++..+++.++..
T Consensus 173 ~~~~l~~~l~~~~~---------~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~~~~~~~~~ 225 (237)
T cd03252 173 SEHAIMRNMHDICA---------GRTVIIIAHRLSTVK-NADRIIVMEKGRIVEQGSHDELLA 225 (237)
T ss_pred HHHHHHHHHHHhcC---------CCEEEEEeCCHHHHH-hCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999887531 238899999999884 699999999998887776655543
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-18 Score=167.95 Aligned_cols=204 Identities=14% Similarity=0.078 Sum_probs=134.3
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-----cccceeeecCCCc------cccccCCeeEEecChHH
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAP------RAMEKDGVHYHFTERSV 189 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-----~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~l 189 (399)
.+..+.+....+|++++|+||||||||||+++|+|+.++ ..| .+....... ......+++|+||++.+
T Consensus 34 ~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~i~~~g~~l~~~~~~~~~~~~~i~~v~q~~~l 112 (274)
T PRK14265 34 LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEG-RLLYRDRNIYDSQINSVKLRRQVGMVFQRPNP 112 (274)
T ss_pred EEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCc-eEEECCEecccccchhHHHhhcEEEEccCCcc
Confidence 344444455679999999999999999999999998753 466 444322111 11123468999999766
Q ss_pred HHHHHhhhhhHHHHHHhccccCCc---HHHHHHHHHc-CCc----eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHH
Q 015825 190 MEKAIKDGKFLEFASVHGNLYGTS---VEAVEAVADA-GKR----CILDIDVQGARSVRASPLDAIFIFICPPSMEELEE 261 (399)
Q Consensus 190 f~~~~~~~~~~E~~~~~~~~~g~~---~~~i~~~~~~-g~~----~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDE 261 (399)
|+ . ++.+++.+.....+.. ...+...++. +.. ..++..+..+....++++..+.+++.+|++++|||
T Consensus 113 ~~-~----tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lllLDE 187 (274)
T PRK14265 113 FP-K----SIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDE 187 (274)
T ss_pred cc-c----cHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeC
Confidence 54 2 5566665432222111 1112222221 110 00111111122223455666778999999999999
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc---------CCeeeecCCCccccC
Q 015825 262 RLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD---------GSIATNHQTSPKGID 332 (399)
Q Consensus 262 pl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~---------~~~~~~~~~~~~~~~ 332 (399)
|++++|+.+++.+.+.|.++.+ ..++++++|+++++...+++++.+. +|.++..+++.+++.
T Consensus 188 Pt~~LD~~~~~~l~~~L~~~~~---------~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~~g~~~~~~~ 258 (274)
T PRK14265 188 PCSALDPISTRQVEELCLELKE---------QYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMFG 258 (274)
T ss_pred CcccCCHHHHHHHHHHHHHHhc---------CCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHHHh
Confidence 9999999999999999987632 1388999999999999999999986 788888888887777
Q ss_pred CCcchhh
Q 015825 333 LPADHSV 339 (399)
Q Consensus 333 ~p~~~~v 339 (399)
.|.....
T Consensus 259 ~~~~~~~ 265 (274)
T PRK14265 259 SPQTKEA 265 (274)
T ss_pred CCCCHHH
Confidence 7654443
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=99.72 E-value=9.2e-19 Score=164.30 Aligned_cols=186 Identities=16% Similarity=0.127 Sum_probs=125.9
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC----ccccccCCeeEEecChHHHHHHHhhhhhHHH
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~ 202 (399)
+....+|++++|+||||||||||+++|+|+.++..| .+...... ........++|+||++.+|+ . ++.++
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~----tv~en 95 (234)
T cd03251 22 SLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSG-RILIDGHDVRDYTLASLRRQIGLVSQDVFLFN-D----TVAEN 95 (234)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCC-EEEECCEEhhhCCHHHHHhhEEEeCCCCeecc-c----cHHHH
Confidence 344568999999999999999999999999999888 55432211 11112345899999876654 2 67777
Q ss_pred HHHhccccCCcHHHHHHHHHc------------CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 203 ASVHGNLYGTSVEAVEAVADA------------GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 203 ~~~~~~~~g~~~~~i~~~~~~------------g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
+.+....+ ........... +....++-.+..+....+++...+.+++.+|++++||||++++|+.+
T Consensus 96 l~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lllLDEP~~~LD~~~ 173 (234)
T cd03251 96 IAYGRPGA--TREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTES 173 (234)
T ss_pred hhccCCCC--CHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHH
Confidence 76543222 22222211111 11111111112222234556667779999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccc
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKG 330 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~ 330 (399)
++.+.+.|.++.+ ..++++++|+++++.. +++++.+.+|.+...+++.++
T Consensus 174 ~~~l~~~l~~~~~---------~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~~~~~~~ 223 (234)
T cd03251 174 ERLVQAALERLMK---------NRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERGTHEEL 223 (234)
T ss_pred HHHHHHHHHHhcC---------CCEEEEEecCHHHHhh-CCEEEEecCCeEeeeCCHHHH
Confidence 9999999987531 2378899999998854 999999999988766654433
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.6e-18 Score=181.68 Aligned_cols=201 Identities=14% Similarity=0.142 Sum_probs=131.9
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-----cccceeeecCCCcc--------ccccCCeeEEecChH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAPR--------AMEKDGVHYHFTERS 188 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-----~~g~~i~~ttr~~~--------~~~~~~i~yvfq~~~ 188 (399)
+....++...+|++++|+||||||||||+++|+|++++ ..| .+........ ......++|+||++.
T Consensus 24 ~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~~~ig~v~Q~~~ 102 (529)
T PRK15134 24 VVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSG-DIRFHGESLLHASEQTLRGVRGNKIAMIFQEPM 102 (529)
T ss_pred eeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccce-EEEECCEecccCCHHHHHHHhcCceEEEecCch
Confidence 33334455569999999999999999999999999986 567 5543221110 011135899999864
Q ss_pred --HHHHHHhhhhhHHHHHHhccc-cCCcHH----HHHHHHHc-CCce---EEecchhhHHHHHcCCcceeEEEEcCCChH
Q 015825 189 --VMEKAIKDGKFLEFASVHGNL-YGTSVE----AVEAVADA-GKRC---ILDIDVQGARSVRASPLDAIFIFICPPSME 257 (399)
Q Consensus 189 --lf~~~~~~~~~~E~~~~~~~~-~g~~~~----~i~~~~~~-g~~~---vldld~~g~~~l~~~~~~~~~ili~~P~ll 257 (399)
+++.+ ++.+++.+.... .+.+.. .+.+.++. +... ..+-.+..+....+++...+.+++.+|+++
T Consensus 103 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSgGe~qrv~iAraL~~~p~ll 178 (529)
T PRK15134 103 VSLNPLH----TLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELL 178 (529)
T ss_pred hhcCchh----hHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCHHHHHHHHHHHHHhcCCCEE
Confidence 23332 344443321111 122222 22223322 1100 011111222233456677778999999999
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 258 ELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 258 lLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
+||||++++|+.+.+.+.+.|+++.++. ..++|+++|+++.+...+++++.+.+|.++..+++.++...+
T Consensus 179 llDEPt~~LD~~~~~~l~~~l~~l~~~~-------g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 248 (529)
T PRK15134 179 IADEPTTALDVSVQAQILQLLRELQQEL-------NMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAATLFSAP 248 (529)
T ss_pred EEcCCCCccCHHHHHHHHHHHHHHHHhc-------CCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeCCHHHHhhCC
Confidence 9999999999999999999999875432 238899999999999999999999999988777766665444
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=99.72 E-value=8.9e-19 Score=157.21 Aligned_cols=151 Identities=19% Similarity=0.169 Sum_probs=110.4
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc---ccccCCeeEEecChHHHHHHHhhhhhHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR---AMEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~---~~~~~~i~yvfq~~~lf~~~~~~~~~~E~ 202 (399)
.+....+|++++|+||||||||||+++|+|.+++..| .+........ ......++|+||++.+|+.+ ++.++
T Consensus 19 ~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~----tv~~~ 93 (173)
T cd03230 19 ISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSG-EIKVLGKDIKKEPEEVKRRIGYLPEEPSLYENL----TVREN 93 (173)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCEEcccchHhhhccEEEEecCCccccCC----cHHHH
Confidence 3345568999999999999999999999999999888 5543221110 11234689999997666543 55555
Q ss_pred HHHhccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 015825 203 ASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAK 282 (399)
Q Consensus 203 ~~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~ 282 (399)
+. + ....+++...+.+++.+|++++||||++++|+.+++.+.+.++++.
T Consensus 94 ~~----------------L---------------S~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~ 142 (173)
T cd03230 94 LK----------------L---------------SGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELK 142 (173)
T ss_pred hh----------------c---------------CHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHH
Confidence 43 0 1111223334447888999999999999999999999999999865
Q ss_pred HHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCe
Q 015825 283 EEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSI 320 (399)
Q Consensus 283 ~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~ 320 (399)
++ ..++++++|+.+++...+++++.+.+|.
T Consensus 143 ~~--------g~tiii~th~~~~~~~~~d~i~~l~~g~ 172 (173)
T cd03230 143 KE--------GKTILLSSHILEEAERLCDRVAILNNGR 172 (173)
T ss_pred HC--------CCEEEEECCCHHHHHHhCCEEEEEeCCC
Confidence 32 2378999999999888889988887653
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-18 Score=166.15 Aligned_cols=199 Identities=14% Similarity=0.116 Sum_probs=132.6
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------ccccCCeeEEecChH--HHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERS--VMEK 192 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~~i~yvfq~~~--lf~~ 192 (399)
+..+.++...+|++++|+||||||||||+++|+|++++..| .+........ ......++|+||++. +++.
T Consensus 27 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG-~i~~~g~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~ 105 (268)
T PRK10419 27 VLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQG-NVSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPR 105 (268)
T ss_pred eEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEeccccChhHHHHHHhcEEEEEcChhhccCCC
Confidence 33444455679999999999999999999999999999888 5554322111 112346899999863 2222
Q ss_pred HHhhhhhHHHHHHhcc-ccCCcHH----HHHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHh
Q 015825 193 AIKDGKFLEFASVHGN-LYGTSVE----AVEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRA 265 (399)
Q Consensus 193 ~~~~~~~~E~~~~~~~-~~g~~~~----~i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~ 265 (399)
. ++.+++.+... .++.... .+.+.++. +.. .+.+..+..+....+++...+.+++.+|++++||||+++
T Consensus 106 ~----t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~qrl~laral~~~p~lllLDEPt~~ 181 (268)
T PRK10419 106 K----TVREIIREPLRHLLSLDKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSN 181 (268)
T ss_pred C----CHHHHHHHHHHhhccCCHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHHHHHHHHHHhcCCCEEEEeCCCcc
Confidence 2 44444432211 1111111 22233322 111 111222222222345556677799999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 266 RGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 266 lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+|..+++.+.+.|+++.++. ..++++++|+++.+...+++++.+.+|.++..+++.++..
T Consensus 182 LD~~~~~~~~~~l~~~~~~~-------~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 241 (268)
T PRK10419 182 LDLVLQAGVIRLLKKLQQQF-------GTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLT 241 (268)
T ss_pred cCHHHHHHHHHHHHHHHHHc-------CcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhccC
Confidence 99999999999998875432 2388999999999999999999999999888887776653
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.7e-18 Score=181.10 Aligned_cols=188 Identities=15% Similarity=0.105 Sum_probs=130.3
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeec-CC-------Cc---cccccCCeeEEecChHHHHHHHhhh
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHT-TR-------AP---RAMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~t-tr-------~~---~~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
...+|++++|+||||||||||+++|+|+.++..| .+... .. .. .......++|+||++.+++.+
T Consensus 306 ~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G-~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~---- 380 (520)
T TIGR03269 306 EVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSG-EVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHR---- 380 (520)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCC----
Confidence 3469999999999999999999999999999888 55431 11 00 001123589999997766655
Q ss_pred hhHHHHHHhccccCCcHH----HHHHHHHc-CCce-----EEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCC
Q 015825 198 KFLEFASVHGNLYGTSVE----AVEAVADA-GKRC-----ILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARG 267 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~~~~----~i~~~~~~-g~~~-----vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD 267 (399)
++.+++.+...+ ..+.. .+.+.++. +... .++-.+..+....++++..+.+++.+|++++||||++++|
T Consensus 381 tv~e~l~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD 459 (520)
T TIGR03269 381 TVLDNLTEAIGL-ELPDELARMKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMD 459 (520)
T ss_pred cHHHHHHHHHHc-CCCHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCC
Confidence 677776543211 11221 22222322 1110 1122222233335667777789999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcc
Q 015825 268 TETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPK 329 (399)
Q Consensus 268 ~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~ 329 (399)
+.+.+.+.+.|+++.++. ..++++++||++++...+++++.+.+|.+...+++.+
T Consensus 460 ~~~~~~l~~~l~~l~~~~-------g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~g~~~~ 514 (520)
T TIGR03269 460 PITKVDVTHSILKAREEM-------EQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEE 514 (520)
T ss_pred HHHHHHHHHHHHHHHHHc-------CcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 999999999998875432 2388999999999999999999999998877665443
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-18 Score=161.62 Aligned_cols=191 Identities=18% Similarity=0.179 Sum_probs=124.0
Q ss_pred HHHHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHH
Q 015825 112 EQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVME 191 (399)
Q Consensus 112 ~l~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~ 191 (399)
.+...+|.+.+..+.+....+|++++|+||||||||||+++|+|+.++..| .+....+..... ..++.++ +
T Consensus 27 ~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G-~i~~~g~~~~~~---~~~~~~~-----~ 97 (224)
T cd03220 27 GRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSG-TVTVRGRVSSLL---GLGGGFN-----P 97 (224)
T ss_pred hhhhhcCCeEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEchhh---cccccCC-----C
Confidence 344566667666666667779999999999999999999999999999888 554322211100 0111111 1
Q ss_pred HHHhhhhhHHHHHHhccccCCcHHHH----HHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhC
Q 015825 192 KAIKDGKFLEFASVHGNLYGTSVEAV----EAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (399)
Q Consensus 192 ~~~~~~~~~E~~~~~~~~~g~~~~~i----~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~l 266 (399)
.+ ++.+++.+....++...... .+.++. +....++..+..+....+++...+.+++.+|++++||||++++
T Consensus 98 ~~----tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEP~~gL 173 (224)
T cd03220 98 EL----TGRENIYLNGRLLGLSRKEIDEKIDEIIEFSELGDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVG 173 (224)
T ss_pred CC----cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccC
Confidence 11 45555544322233222221 222211 1111111122222233455666777999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 267 D~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
|+.++..+.+.+.++.++ ..++++++|+++++...+++++.+.+|.+..
T Consensus 174 D~~~~~~~~~~l~~~~~~--------~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 222 (224)
T cd03220 174 DAAFQEKCQRRLRELLKQ--------GKTVILVSHDPSSIKRLCDRALVLEKGKIRF 222 (224)
T ss_pred CHHHHHHHHHHHHHHHhC--------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999876432 2378999999999998899999998887654
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.8e-18 Score=163.96 Aligned_cols=172 Identities=16% Similarity=0.068 Sum_probs=117.5
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcc
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGN 208 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~ 208 (399)
...+|++++|+||||||||||+++|+|.++|..| .+....+ .++|++|....+... ++.+++.+...
T Consensus 21 ~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G-~i~~~g~--------~i~~~~q~~~~~~~~----tv~e~l~~~~~ 87 (246)
T cd03237 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEG-DIEIELD--------TVSYKPQYIKADYEG----TVRDLLSSITK 87 (246)
T ss_pred CcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCC-eEEECCc--------eEEEecccccCCCCC----CHHHHHHHHhh
Confidence 3458999999999999999999999999999888 5543221 378999886543322 56666543222
Q ss_pred ccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHh
Q 015825 209 LYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQ 287 (399)
Q Consensus 209 ~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~ 287 (399)
.++.......+.++. +....++-.+..+....++++..+.+++.+|++.+||||++++|+.++..+.+.|+++..+.
T Consensus 88 ~~~~~~~~~~~~l~~l~l~~~~~~~~~~LSgGe~qrv~iaraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~-- 165 (246)
T cd03237 88 DFYTHPYFKTEIAKPLQIEQILDREVPELSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENN-- 165 (246)
T ss_pred hccccHHHHHHHHHHcCCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhc--
Confidence 111111112222221 11111121222222334566677779999999999999999999999999999998875431
Q ss_pred ccCCCcceEEEeCCCHHHHHHHHHHhhcccCCe
Q 015825 288 GKSSGIFDHILYNDKLEECYENLKKHLGLDGSI 320 (399)
Q Consensus 288 ~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~ 320 (399)
..++++++|+++++...+++++.+.+..
T Consensus 166 -----~~tiiivsHd~~~~~~~~d~i~~l~~~~ 193 (246)
T cd03237 166 -----EKTAFVVEHDIIMIDYLADRLIVFEGEP 193 (246)
T ss_pred -----CCEEEEEeCCHHHHHHhCCEEEEEcCCC
Confidence 2388999999999998899988887643
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-18 Score=176.55 Aligned_cols=204 Identities=16% Similarity=0.130 Sum_probs=141.4
Q ss_pred ccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCc----ccceeeecCC--------CccccccCCeeEEecChH-HHH
Q 015825 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM----FGFSVSHTTR--------APRAMEKDGVHYHFTERS-VME 191 (399)
Q Consensus 125 s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~----~g~~i~~ttr--------~~~~~~~~~i~yvfq~~~-lf~ 191 (399)
+.++...+|++++|+|.|||||||+++.|.|+++.. .| .+....+ ..+....+.++|+||++- .+.
T Consensus 27 ~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G-~I~~~g~dl~~l~~~~~r~~rg~~Ia~i~Q~p~~sln 105 (539)
T COG1123 27 DVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSG-EVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLN 105 (539)
T ss_pred cceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccce-EEEECCcchhcCCHHHHHHhccccEEEEecCchhhcC
Confidence 344667799999999999999999999999999875 45 4433221 112222346899999953 333
Q ss_pred HHHhh-hhhHHHHHHhccccCCcHHHHHHHHHcCCceEEec--------chhhHHHHHcCCcceeEEEEcCCChHHHHHH
Q 015825 192 KAIKD-GKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDI--------DVQGARSVRASPLDAIFIFICPPSMEELEER 262 (399)
Q Consensus 192 ~~~~~-~~~~E~~~~~~~~~g~~~~~i~~~~~~g~~~vldl--------d~~g~~~l~~~~~~~~~ili~~P~lllLDEp 262 (399)
...+. ..+.|....+.. ...++.++.+.+.+. .+.+ -|..+....+|+...+.+++++|+++++|||
T Consensus 106 P~~tIg~Qi~E~~~~h~~---~~~~ea~~~a~elL~-~Vgl~~~~~~~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEP 181 (539)
T COG1123 106 PVMTIGDQIREALRLHGK---GSRAEARKRAVELLE-QVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEP 181 (539)
T ss_pred chhhHHHHHHHHHHHhcc---ccHHHHHHHHHHHHH-HcCCCChhhhccCCcccCchHHHHHHHHHHHhCCCCEEEECCC
Confidence 22222 234444433321 223333322221110 0111 1222222345556666799999999999999
Q ss_pred HHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 263 LRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 263 l~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
|.++|..++.++.+.|+.+.++.+. .+++++||+.-+.+.+|++++|.+|.++..|++++++..|......
T Consensus 182 TTaLDvt~q~qIL~llk~l~~e~g~-------a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~~~~i~~~p~hpYT~ 252 (539)
T COG1123 182 TTALDVTTQAQILDLLKDLQRELGM-------AVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILSNPQHPYTR 252 (539)
T ss_pred ccccCHHHHHHHHHHHHHHHHHcCc-------EEEEEcCCHHHHHHhcCeEEEEECCEEEEecCHHHHHhccCCcccH
Confidence 9999999999999999999877543 8899999999999999999999999999999999999888765433
|
|
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.9e-18 Score=157.29 Aligned_cols=166 Identities=15% Similarity=0.128 Sum_probs=108.9
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc------cccccCCeeEEecChH--HHHHHHhhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP------RAMEKDGVHYHFTERS--VMEKAIKDG 197 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~--lf~~~~~~~ 197 (399)
.+....+|++++|+||||||||||+++|+|..++..| .+....... ......+++|+||++. .| ..
T Consensus 11 vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~-~~---- 84 (190)
T TIGR01166 11 LNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSG-AVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF-AA---- 84 (190)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-eEEECCEEccccccchHHHHhhEEEEecChhhccc-cc----
Confidence 3345568999999999999999999999999999888 554322111 1111345899999863 23 22
Q ss_pred hhHHHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 198 KFLEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
++.+++.+....++..... +.+.++. +.....+-.+..+....+++...+.+++.+|++++||||++++|+.+++
T Consensus 85 tv~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~ 164 (190)
T TIGR01166 85 DVDQDVAFGPLNLGLSEAEVERRVREALTAVGASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGRE 164 (190)
T ss_pred cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHH
Confidence 6677776543323333222 2222222 1111111112222223455666777999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHHH
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEE 305 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdlee 305 (399)
.+.+.|.++.++ ..++++++|++++
T Consensus 165 ~~~~~l~~~~~~--------~~tili~sH~~~~ 189 (190)
T TIGR01166 165 QMLAILRRLRAE--------GMTVVISTHDVDL 189 (190)
T ss_pred HHHHHHHHHHHc--------CCEEEEEeecccc
Confidence 999999886432 2388999998765
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.7e-18 Score=156.63 Aligned_cols=155 Identities=15% Similarity=0.140 Sum_probs=112.4
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----cccccCCeeEEecCh---HHHHHHHhhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTER---SVMEKAIKDG 197 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~---~lf~~~~~~~ 197 (399)
.+....+|++++|+||||||||||+++|+|.+++..| .+....... .......++|+||++ .+++.+
T Consensus 19 vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~---- 93 (182)
T cd03215 19 VSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASG-EITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDL---- 93 (182)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECCccCHHHHHhCCeEEecCCcccCcccCCC----
Confidence 3345568999999999999999999999999999888 554322111 111234689999984 234433
Q ss_pred hhHHHHHHhccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHH
Q 015825 198 KFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~ 277 (399)
++.+++.+... +....+++...+.+++.+|++++||||++++|+.+++.+.+.
T Consensus 94 t~~e~l~~~~~---------------------------LS~G~~qrl~la~al~~~p~llllDEP~~~LD~~~~~~l~~~ 146 (182)
T cd03215 94 SVAENIALSSL---------------------------LSGGNQQKVVLARWLARDPRVLILDEPTRGVDVGAKAEIYRL 146 (182)
T ss_pred cHHHHHHHHhh---------------------------cCHHHHHHHHHHHHHccCCCEEEECCCCcCCCHHHHHHHHHH
Confidence 66676654321 011122334445588899999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCe
Q 015825 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSI 320 (399)
Q Consensus 278 L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~ 320 (399)
+.++.++ ..++++++|+++++...+++++.+.+|.
T Consensus 147 l~~~~~~--------~~tiii~sh~~~~~~~~~d~v~~l~~G~ 181 (182)
T cd03215 147 IRELADA--------GKAVLLISSELDELLGLCDRILVMYEGR 181 (182)
T ss_pred HHHHHHC--------CCEEEEEeCCHHHHHHhCCEEEEecCCc
Confidence 9886431 2388999999999988899988887663
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.2e-18 Score=157.12 Aligned_cols=153 Identities=16% Similarity=0.145 Sum_probs=109.8
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc------cccccCCeeEEecChHHHHHHHhhhhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP------RAMEKDGVHYHFTERSVMEKAIKDGKF 199 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf~~~~~~~~~ 199 (399)
.+....+|++++|+||||||||||+++|+|.+++..| .+....... .......++|+||++.+|+.. ++
T Consensus 19 i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~----t~ 93 (178)
T cd03229 19 VSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSG-SILIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHL----TV 93 (178)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEccccchhHHHHhhcEEEEecCCccCCCC----CH
Confidence 3445569999999999999999999999999999888 554322111 111234689999987655433 55
Q ss_pred HHHHHHhccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHH
Q 015825 200 LEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLR 279 (399)
Q Consensus 200 ~E~~~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~ 279 (399)
.++..+. . ....+++...+.+++.+|++.+||||++++|+.++..+.+.+.
T Consensus 94 ~~~l~~~-----l------------------------S~G~~qr~~la~al~~~p~llilDEP~~~LD~~~~~~l~~~l~ 144 (178)
T cd03229 94 LENIALG-----L------------------------SGGQQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLK 144 (178)
T ss_pred HHheeec-----C------------------------CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHH
Confidence 5554322 0 1111223334447788999999999999999999999999999
Q ss_pred HHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 280 NAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 280 ~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
++.++. ..++++++|+.+++...+++++.+.+|
T Consensus 145 ~~~~~~-------~~tiii~sH~~~~~~~~~d~i~~l~~g 177 (178)
T cd03229 145 SLQAQL-------GITVVLVTHDLDEAARLADRVVVLRDG 177 (178)
T ss_pred HHHHhc-------CCEEEEEeCCHHHHHHhcCEEEEEeCC
Confidence 875431 238899999999988888888877655
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.6e-18 Score=158.10 Aligned_cols=171 Identities=15% Similarity=0.081 Sum_probs=119.7
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC---CcccceeeecCCCc---cccccCCeeEEecChHHHHHHHhh
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP---SMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEKAIKD 196 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~---~~~g~~i~~ttr~~---~~~~~~~i~yvfq~~~lf~~~~~~ 196 (399)
..+.+....+|++++|+||||||||||+++|+|.++ +..| .+....... .......++|+||+..+|+.+
T Consensus 23 l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G-~i~i~g~~~~~~~~~~~~~i~~~~q~~~~~~~~--- 98 (202)
T cd03233 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEG-DIHYNGIPYKEFAEKYPGEIIYVSEEDVHFPTL--- 98 (202)
T ss_pred eeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcce-EEEECCEECccchhhhcceEEEEecccccCCCC---
Confidence 333345567999999999999999999999999998 7778 554322111 111234589999987666654
Q ss_pred hhhHHHHHHhccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHH
Q 015825 197 GKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILK 276 (399)
Q Consensus 197 ~~~~E~~~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~ 276 (399)
++.+++.+..... .+-.+..+....+++...+.+++.+|++++||||++++|+.+++.+.+
T Consensus 99 -tv~~~l~~~~~~~------------------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~LD~~~~~~~~~ 159 (202)
T cd03233 99 -TVRETLDFALRCK------------------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILK 159 (202)
T ss_pred -cHHHHHhhhhhhc------------------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCccCCHHHHHHHHH
Confidence 7777776542211 010111122233455566668899999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCcceEEE-eCCCHHHHHHHHHHhhcccCCeeee
Q 015825 277 RLRNAKEEIKQGKSSGIFDHIL-YNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 277 ~L~~~~~~l~~~~~~~~~t~Vi-v~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
.++++.++. ..++++ ++|+.+++...+++++.+.+|+++.
T Consensus 160 ~l~~~~~~~-------~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~ 200 (202)
T cd03233 160 CIRTMADVL-------KTTTFVSLYQASDEIYDLFDKVLVLYEGRQIY 200 (202)
T ss_pred HHHHHHHhC-------CCEEEEEEcCCHHHHHHhCCeEEEEECCEEEe
Confidence 999875431 225555 5667888888999999999987764
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=2.8e-18 Score=162.86 Aligned_cols=192 Identities=13% Similarity=0.125 Sum_probs=126.6
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
+...+|++++|+||||||||||+++|+|+.++ .| .+....... .......++|+||++..+..+ ++.+++
T Consensus 17 l~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G-~i~~~g~~i~~~~~~~~~~~i~~v~q~~~~~~~~----tv~~nl 90 (248)
T PRK03695 17 AEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SG-SIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAM----PVFQYL 90 (248)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-Ce-EEEECCEecCcCCHHHHhhheEEecccCccCCCc----cHHHHH
Confidence 44568999999999999999999999999865 67 554322211 111123478999986555443 666776
Q ss_pred HHhccccCCcH---HHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEc-------CCChHHHHHHHHhCCCCcHH
Q 015825 204 SVHGNLYGTSV---EAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFIC-------PPSMEELEERLRARGTETED 272 (399)
Q Consensus 204 ~~~~~~~g~~~---~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~-------~P~lllLDEpl~~lD~~~~e 272 (399)
.+....+.... ..+.+.++. +....++..+..+....+++...+.+++. +|++++||||++++|+.++.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~~~~~~p~p~llllDEPt~~LD~~~~~ 170 (248)
T PRK03695 91 TLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQLSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQA 170 (248)
T ss_pred HhcCccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhccccccCCCCCEEEEcCCcccCCHHHHH
Confidence 65422211111 122222222 11111111111122223455556667775 56999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
.+.+.|+++.++ ..++++++|+++++...+++++.+.+|+++..+++.++...
T Consensus 171 ~l~~~L~~~~~~--------~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 223 (248)
T PRK03695 171 ALDRLLSELCQQ--------GIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTP 223 (248)
T ss_pred HHHHHHHHHHhC--------CCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhCc
Confidence 999999876432 23889999999999999999999999998887776655443
|
|
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.6e-18 Score=200.56 Aligned_cols=190 Identities=16% Similarity=0.083 Sum_probs=140.4
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc---cccccCCeeEEecChHHHHHHHhhhhhHHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~ 204 (399)
....+|++++|+||||||||||+++|+|+.++..| .+....... ....+..+||++|...+++.+ ++.|++.
T Consensus 1960 f~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG-~I~i~G~~i~~~~~~~r~~IGy~pQ~~~L~~~L----Tv~E~L~ 2034 (2272)
T TIGR01257 1960 VGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSG-DATVAGKSILTNISDVHQNMGYCPQFDAIDDLL----TGREHLY 2034 (2272)
T ss_pred EEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCcc-EEEECCEECcchHHHHhhhEEEEeccccCCCCC----CHHHHHH
Confidence 44569999999999999999999999999999999 554322111 111234589999998877766 7888887
Q ss_pred HhccccCCcHHHHHHHHHc-----CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHH
Q 015825 205 VHGNLYGTSVEAVEAVADA-----GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLR 279 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~~~~~-----g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~ 279 (399)
+....++.+.+.+++.+.+ ++....+-.+..+....++++..+.+++.+|++++||||++++|+.+++.+++.|.
T Consensus 2035 l~a~l~g~~~~~~~~~v~~lLe~lgL~~~~dk~~~~LSGGqKqRLslA~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~ 2114 (2272)
T TIGR01257 2035 LYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIV 2114 (2272)
T ss_pred HHHHhcCCCHHHHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHH
Confidence 7666667655443333221 11111111122222334666777789999999999999999999999999999998
Q ss_pred HHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccc
Q 015825 280 NAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKG 330 (399)
Q Consensus 280 ~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~ 330 (399)
++.++ ..++|+++|+++++...+++++.+.+|++...+++.++
T Consensus 2115 ~l~~~--------g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~L 2157 (2272)
T TIGR01257 2115 SIIRE--------GRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHL 2157 (2272)
T ss_pred HHHhC--------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 86432 34899999999999999999999999999888877654
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.3e-18 Score=162.31 Aligned_cols=190 Identities=16% Similarity=0.102 Sum_probs=135.9
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc---ccccCCeeEEecChH-HHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR---AMEKDGVHYHFTERS-VMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~---~~~~~~i~yvfq~~~-lf~~~~~~~~~~E~~ 203 (399)
+...+|++++++|||||||||++++|.|++.|..| .+......|. ....+.++++|.... +++.+ -..+..
T Consensus 45 f~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G-~v~V~G~~Pf~~~~~~~~~~~~v~gqk~ql~Wdl----p~~ds~ 119 (325)
T COG4586 45 FEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSG-KVRVNGKDPFRRREEYLRSIGLVMGQKLQLWWDL----PALDSL 119 (325)
T ss_pred eecCCCcEEEEEcCCCCcchhhHHHHhCccccCCC-eEEecCcCcchhHHHHHHHHHHHhhhhheeeeec----hhhhhH
Confidence 45679999999999999999999999999999998 5543322221 112233556554432 22222 123334
Q ss_pred HHhccccCCcHHHHHHHHHcCCceEEecchhhHHHH------HcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHH
Q 015825 204 SVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSV------RASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l------~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~ 277 (399)
......|..+.+..++.+.. +..++|++..-...+ ++.+.+.+.+|+++|+++.||||+.++|...+..+++.
T Consensus 120 ~v~~~Iy~Ipd~~F~~r~~~-l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~F 198 (325)
T COG4586 120 EVLKLIYEIPDDEFAERLDF-LTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREF 198 (325)
T ss_pred HHHHHHHhCCHHHHHHHHHH-HHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHH
Confidence 44455677777777665543 444566653222222 34456677899999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccc
Q 015825 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKG 330 (399)
Q Consensus 278 L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~ 330 (399)
++++.++. .+|+++.+|+++.....+++++.++.|+++..|+-.++
T Consensus 199 lke~n~~~-------~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l 244 (325)
T COG4586 199 LKEYNEER-------QATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQL 244 (325)
T ss_pred HHHHHHhh-------CceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHH
Confidence 99877553 46999999999999999999999999999987765433
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.2e-18 Score=176.62 Aligned_cols=191 Identities=12% Similarity=0.078 Sum_probs=132.1
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----cccccCCeeEEecChHHHHHHHhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSVMEKAIKD 196 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~lf~~~~~~ 196 (399)
+..+.+....+|++++|+||||||||||+++|+|+++|..| .+....... .......++|+||++.+++.+
T Consensus 19 il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~--- 94 (501)
T PRK11288 19 ALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAG-SILIDGQEMRFASTTAALAAGVAIIYQELHLVPEM--- 94 (501)
T ss_pred EEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCC-EEEECCEECCCCCHHHHHhCCEEEEEechhccCCC---
Confidence 33344455679999999999999999999999999999888 554322111 111134689999997766654
Q ss_pred hhhHHHHHHhcc--ccC-CcHH----HHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCC
Q 015825 197 GKFLEFASVHGN--LYG-TSVE----AVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGT 268 (399)
Q Consensus 197 ~~~~E~~~~~~~--~~g-~~~~----~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~ 268 (399)
++.+++.+... .++ .... .+.+.++. +.....+..+..+....+++...+.+++.+|++++||||++++|+
T Consensus 95 -tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~LD~ 173 (501)
T PRK11288 95 -TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVIAFDEPTSSLSA 173 (501)
T ss_pred -CHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCCcCCchhhCCHHHHHHHHHHHHHHhCCCEEEEcCCCCCCCH
Confidence 67777765321 122 1221 22222322 111111222223333456677777899999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecC
Q 015825 269 ETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQ 325 (399)
Q Consensus 269 ~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~ 325 (399)
.+.+.+.+.|.++.++ ..++|+++|+++++...+++++.+.+|.++...
T Consensus 174 ~~~~~l~~~l~~~~~~--------g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~ 222 (501)
T PRK11288 174 REIEQLFRVIRELRAE--------GRVILYVSHRMEEIFALCDAITVFKDGRYVATF 222 (501)
T ss_pred HHHHHHHHHHHHHHhC--------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 9999999999886421 348999999999999999999999999876543
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.2e-18 Score=160.03 Aligned_cols=182 Identities=13% Similarity=0.113 Sum_probs=120.4
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
+....+....+|++++|+||||||||||+++|+|+.++..| .+....... .......++|+||++.+|+ .
T Consensus 22 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~---- 95 (225)
T PRK10247 22 ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSG-TLLFEGEDISTLKPEIYRQQVSYCAQTPTLFG-D---- 95 (225)
T ss_pred eeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCC-eEEECCEEcCcCCHHHHHhccEEEeccccccc-c----
Confidence 34444455679999999999999999999999999999888 554322111 1112346899999976654 2
Q ss_pred hhHHHHHHhccccCCc--HHHHHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 198 KFLEFASVHGNLYGTS--VEAVEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~~--~~~i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
++.+++.+....++.. ...+.+.++. +.. ...+..+..+....++++..+.+++.+|++++||||++++|+.+.+.
T Consensus 96 tv~enl~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~ 175 (225)
T PRK10247 96 TVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHN 175 (225)
T ss_pred cHHHHHHhHHhhcCCChHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHH
Confidence 5667665532222221 2223333332 111 11121122222234555666779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
+.+.+.++.++. ..++++++|+.+++. .+++++.+.
T Consensus 176 l~~~l~~~~~~~-------~~tvii~sh~~~~~~-~~d~i~~l~ 211 (225)
T PRK10247 176 VNEIIHRYVREQ-------NIAVLWVTHDKDEIN-HADKVITLQ 211 (225)
T ss_pred HHHHHHHHHHhc-------CCEEEEEECChHHHH-hCCEEEEEe
Confidence 999988865431 238899999998874 688887774
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.7e-18 Score=160.65 Aligned_cols=182 Identities=21% Similarity=0.189 Sum_probs=121.9
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|++++|+||||||||||+++|+|+.++..| .+....... .......++|+||++.+|+ . ++.+++
T Consensus 24 l~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~----tv~~~~ 97 (229)
T cd03254 24 FSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG-QILIDGIDIRDISRKSLRSMIGVVLQDTFLFS-G----TIMENI 97 (229)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC-EEEECCEeHHHcCHHHHhhhEEEecCCchhhh-h----HHHHHH
Confidence 44569999999999999999999999999999888 554322111 1112345899999976654 2 667776
Q ss_pred HHhccccCCcHHHHHHHHHc-CCce-----------EEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-GKRC-----------ILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g~~~-----------vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+....+ ....+...++. +... .++-.+..+....++++..+.+++.+|++++||||++++|+.++
T Consensus 98 ~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p~llllDEP~~~LD~~~~ 175 (229)
T cd03254 98 RLGRPNA--TDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETE 175 (229)
T ss_pred hccCCCC--CHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 5542211 12222221111 1100 00000111222334556666799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTS 327 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~ 327 (399)
+.+.+.+..+. + ..++++++|+++++. .+++++.+.+|.++..++.
T Consensus 176 ~~l~~~l~~~~-~--------~~tii~~sh~~~~~~-~~d~i~~l~~g~~~~~~~~ 221 (229)
T cd03254 176 KLIQEALEKLM-K--------GRTSIIIAHRLSTIK-NADKILVLDDGKIIEEGTH 221 (229)
T ss_pred HHHHHHHHHhc-C--------CCEEEEEecCHHHHh-hCCEEEEEeCCeEEEeCCH
Confidence 99999888753 1 238899999998875 5999999999888765543
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.7e-18 Score=157.71 Aligned_cols=183 Identities=13% Similarity=0.063 Sum_probs=121.4
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc-cccCCeeEEecChHHHHHHHhhhhhH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA-MEKDGVHYHFTERSVMEKAIKDGKFL 200 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~-~~~~~i~yvfq~~~lf~~~~~~~~~~ 200 (399)
+....+....+|++++|+||||||||||+++|+|++++..| .+......... .....++|++|.+.+++.+ ++.
T Consensus 26 il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~i~~~~~~~~i~~~~q~~~~~~~~----t~~ 100 (214)
T PRK13543 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESG-QIQIDGKTATRGDRSRFMAYLGHLPGLKADL----STL 100 (214)
T ss_pred eeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCe-eEEECCEEccchhhhhceEEeecCcccccCC----cHH
Confidence 33334455669999999999999999999999999999888 55443221111 1123588999987665544 666
Q ss_pred HHHHHhccccCCc-HHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHH
Q 015825 201 EFASVHGNLYGTS-VEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRL 278 (399)
Q Consensus 201 E~~~~~~~~~g~~-~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L 278 (399)
++..+....++.. ...+.+.+.. +.....+..+..+....+++...+.+++.+|++++||||++++|+.+.+.+.+.+
T Consensus 101 e~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l 180 (214)
T PRK13543 101 ENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVRQLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMI 180 (214)
T ss_pred HHHHHHHHhcCCcHHHHHHHHHHHcCChhhccCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHH
Confidence 7665543222322 1222222222 1111112222222233455666677999999999999999999999999999988
Q ss_pred HHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 279 RNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 279 ~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
.++.++ ..++++++|+++++...+++++.+.
T Consensus 181 ~~~~~~--------~~tiii~sH~~~~~~~~~~~i~~l~ 211 (214)
T PRK13543 181 SAHLRG--------GGAALVTTHGAYAAPPVRTRMLTLE 211 (214)
T ss_pred HHHHhC--------CCEEEEEecChhhhhhhcceEEEEe
Confidence 876432 2388999999999998888876543
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.9e-18 Score=157.69 Aligned_cols=163 Identities=15% Similarity=0.088 Sum_probs=116.3
Q ss_pred eccCccCCCCcEEEEEcCCCCCHHHHHhhhhhcc--CCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 124 WSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEF--PSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 124 ~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~--~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
...+....+|++++|+||||||||||+++|+|.. ++..| .+..............++|+||++.+|+.+ ++.+
T Consensus 24 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G-~i~~~g~~~~~~~~~~i~~~~q~~~~~~~~----tv~~ 98 (192)
T cd03232 24 NNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITG-EILINGRPLDKNFQRSTGYVEQQDVHSPNL----TVRE 98 (192)
T ss_pred EccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcce-EEEECCEehHHHhhhceEEecccCccccCC----cHHH
Confidence 3334455689999999999999999999999975 36777 554332221111224589999987666554 6777
Q ss_pred HHHHhccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHH
Q 015825 202 FASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNA 281 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~ 281 (399)
++.+..... .+....+++...+.+++.+|+++++|||++++|+.+++.+.+.++++
T Consensus 99 ~l~~~~~~~------------------------~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~ 154 (192)
T cd03232 99 ALRFSALLR------------------------GLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKL 154 (192)
T ss_pred HHHHHHHHh------------------------cCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHH
Confidence 766532110 11222334455566888999999999999999999999999999876
Q ss_pred HHHHHhccCCCcceEEEeCCCHH-HHHHHHHHhhcccC-Ceeee
Q 015825 282 KEEIKQGKSSGIFDHILYNDKLE-ECYENLKKHLGLDG-SIATN 323 (399)
Q Consensus 282 ~~~l~~~~~~~~~t~Viv~hdle-ea~~~l~~ii~~~~-~~~~~ 323 (399)
.++ ..++++++|+++ ++...+++++.+.+ |.++.
T Consensus 155 ~~~--------~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~ 190 (192)
T cd03232 155 ADS--------GQAILCTIHQPSASIFEKFDRLLLLKRGGKTVY 190 (192)
T ss_pred HHc--------CCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEe
Confidence 431 238899999998 46778899988887 77654
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-18 Score=158.48 Aligned_cols=161 Identities=18% Similarity=0.132 Sum_probs=116.3
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhcc--CCcccceeeecCCCccc-cccCCeeEEecChHHHHHHHhhhhhHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEF--PSMFGFSVSHTTRAPRA-MEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~--~~~~g~~i~~ttr~~~~-~~~~~i~yvfq~~~lf~~~~~~~~~~E~ 202 (399)
.+....+|++++|+||||||||||+++|+|+. ++..| .+......... .....++|+||++.+|+.+ ++.++
T Consensus 28 ~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G-~i~~~g~~~~~~~~~~~i~~~~q~~~~~~~~----t~~~~ 102 (194)
T cd03213 28 VSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSG-EVLINGRPLDKRSFRKIIGYVPQDDILHPTL----TVRET 102 (194)
T ss_pred ceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCce-EEEECCEeCchHhhhheEEEccCcccCCCCC----cHHHH
Confidence 33445689999999999999999999999999 88888 55443222111 1234589999987666544 66666
Q ss_pred HHHhccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 015825 203 ASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAK 282 (399)
Q Consensus 203 ~~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~ 282 (399)
+.+....+ . +....+++...+.+++.+|++++||||++++|+.+++.+.+.++++.
T Consensus 103 i~~~~~~~-------------------~-----LS~G~~qrv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~ 158 (194)
T cd03213 103 LMFAAKLR-------------------G-----LSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLA 158 (194)
T ss_pred HHHHHHhc-------------------c-----CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHH
Confidence 65432111 1 11122334445568888999999999999999999999999998764
Q ss_pred HHHHhccCCCcceEEEeCCCHH-HHHHHHHHhhcccCCeeee
Q 015825 283 EEIKQGKSSGIFDHILYNDKLE-ECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 283 ~~l~~~~~~~~~t~Viv~hdle-ea~~~l~~ii~~~~~~~~~ 323 (399)
++ ..++++++|+++ ++...+++++.+.+|.+..
T Consensus 159 ~~--------~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~ 192 (194)
T cd03213 159 DT--------GRTIICSIHQPSSEIFELFDKLLLLSQGRVIY 192 (194)
T ss_pred hC--------CCEEEEEecCchHHHHHhcCEEEEEeCCEEEe
Confidence 32 238899999986 6777889999998887654
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.6e-18 Score=165.40 Aligned_cols=187 Identities=16% Similarity=0.113 Sum_probs=130.8
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC----ccccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|++++|+||||+|||||+++|+|+++ ..| .+...... .....+..++|+||++.+|+. ++.+++
T Consensus 25 l~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G-~I~i~g~~i~~~~~~~lr~~i~~v~q~~~lf~~-----tv~~nl 97 (275)
T cd03289 25 FSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG-DIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSG-----TFRKNL 97 (275)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCc-EEEECCEEhhhCCHHHHhhhEEEECCCcccchh-----hHHHHh
Confidence 4456999999999999999999999999997 567 55432211 111123468999999887752 667776
Q ss_pred HHhccccCCcHHHHHHHHHc-CCceEEecchhh-----------HHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-GKRCILDIDVQG-----------ARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g-----------~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
...+. ...+.+.+.++. ++...++--+.+ +....+++...+.+++.+|++++||||++++|+.+.
T Consensus 98 ~~~~~---~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~illlDEpts~LD~~~~ 174 (275)
T cd03289 98 DPYGK---WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITY 174 (275)
T ss_pred hhccC---CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHH
Confidence 43321 223334433332 111000000111 222234555666799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
..+++.|.+.. ..+++++++|+++.+. .+++++.+.+|.++..++|.+++..+
T Consensus 175 ~~l~~~l~~~~---------~~~tii~isH~~~~i~-~~dri~vl~~G~i~~~g~~~~l~~~~ 227 (275)
T cd03289 175 QVIRKTLKQAF---------ADCTVILSEHRIEAML-ECQRFLVIEENKVRQYDSIQKLLNEK 227 (275)
T ss_pred HHHHHHHHHhc---------CCCEEEEEECCHHHHH-hCCEEEEecCCeEeecCCHHHHhhCc
Confidence 99998888632 1368999999998765 59999999999999999998888865
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=99.70 E-value=7e-18 Score=157.36 Aligned_cols=182 Identities=15% Similarity=0.095 Sum_probs=119.8
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeec--CC--Ccc-----c---cccCCeeEEecChHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHT--TR--APR-----A---MEKDGVHYHFTERSV 189 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~t--tr--~~~-----~---~~~~~i~yvfq~~~l 189 (399)
+....+....+|++++|+||||||||||+++|+|++++..| .+... .. ... . ....+++|+||++.+
T Consensus 23 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~~~g~~~~~~~~~~~~~~~~~~~~i~~~~q~~~~ 101 (224)
T TIGR02324 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSG-RILVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRV 101 (224)
T ss_pred EEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-eEEEecCCCccchhhcCHHHHHHHHhcceEEEeccccc
Confidence 33444455679999999999999999999999999999888 55432 11 110 0 112458999999877
Q ss_pred HHHHHhhhhhHHHHHHhccccCCcHH----HHHHHHHc-CCce-EEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHH
Q 015825 190 MEKAIKDGKFLEFASVHGNLYGTSVE----AVEAVADA-GKRC-ILDIDVQGARSVRASPLDAIFIFICPPSMEELEERL 263 (399)
Q Consensus 190 f~~~~~~~~~~E~~~~~~~~~g~~~~----~i~~~~~~-g~~~-vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl 263 (399)
++.+ ++.+++.+....++.... .+.+.++. +... ..+..+..+....+++...+.+++.+|++++||||+
T Consensus 102 ~~~~----tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt 177 (224)
T TIGR02324 102 IPRV----SALEVVAEPLLERGVPREAARARARELLARLNIPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPT 177 (224)
T ss_pred CCCc----cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 6655 566665543222222222 22222222 1111 111111222223455666677899999999999999
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 264 RARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 264 ~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
+++|+.+.+.+.+.++++..+ ..++++++|+.+.+...+++++..
T Consensus 178 ~~LD~~~~~~l~~~l~~~~~~--------g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 178 ASLDAANRQVVVELIAEAKAR--------GAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred ccCCHHHHHHHHHHHHHHHhc--------CCEEEEEeCCHHHHHHhcceeEec
Confidence 999999999999999886432 248899999998888788876654
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.8e-18 Score=159.91 Aligned_cols=185 Identities=16% Similarity=0.115 Sum_probs=124.3
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
+...+|++++|+||||||||||+++|+|+.++..| .+....... .......++|+||++.+++ . ++.+++
T Consensus 24 ~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~----tv~e~l 97 (238)
T cd03249 24 LTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSG-EILLDGVDIRDLNLRWLRSQIGLVSQEPVLFD-G----TIAENI 97 (238)
T ss_pred EEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCC-EEEECCEehhhcCHHHHHhhEEEECCchhhhh-h----hHHHHh
Confidence 44568999999999999999999999999999888 454322111 1111235899999976654 3 667776
Q ss_pred HHhccccCCcHHHHHHHHHc-C-----------CceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-G-----------KRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g-----------~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+....+ .........+. + ....++-.+..+....+++...+.+++.+|++++||||++++|+.++
T Consensus 98 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP~~gLD~~~~ 175 (238)
T cd03249 98 RYGKPDA--TDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESE 175 (238)
T ss_pred hccCCCC--CHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 6532221 11222111111 1 11111111112222344556666789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccc
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKG 330 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~ 330 (399)
+.+.+.|+.+. + ..++++++|+++++. .+++++.+.+|.++..++..++
T Consensus 176 ~~l~~~l~~~~-~--------g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~~~~~~~~ 224 (238)
T cd03249 176 KLVQEALDRAM-K--------GRTTIVIAHRLSTIR-NADLIAVLQNGQVVEQGTHDEL 224 (238)
T ss_pred HHHHHHHHHhc-C--------CCEEEEEeCCHHHHh-hCCEEEEEECCEEEEeCCHHHH
Confidence 99999988753 1 247889999999886 7999999999988766654433
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.70 E-value=6.5e-18 Score=175.82 Aligned_cols=194 Identities=13% Similarity=0.099 Sum_probs=132.5
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC--cccceeeecCCCc-----cccccCCeeEEecChHHHHHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS--MFGFSVSHTTRAP-----RAMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~--~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~lf~~~~ 194 (399)
+....+....+|++++|+||||||||||+++|+|+.++ ..| .+....... ......+++|+||++.+++.+
T Consensus 16 il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~- 93 (500)
T TIGR02633 16 ALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDG-EIYWSGSPLKASNIRDTERAGIVIIHQELTLVPEL- 93 (500)
T ss_pred eecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCe-EEEECCEECCCCCHHHHHhCCEEEEeeccccCCCC-
Confidence 33334455669999999999999999999999999886 577 554322111 111124689999997766654
Q ss_pred hhhhhHHHHHHhcccc--C--CcHH----HHHHHHHc-CCceEE-ecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHH
Q 015825 195 KDGKFLEFASVHGNLY--G--TSVE----AVEAVADA-GKRCIL-DIDVQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~--g--~~~~----~i~~~~~~-g~~~vl-dld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~ 264 (399)
++.+++.+....+ + .... .+.+.++. +..... +..+..+....++++..+.+|+.+|++++||||++
T Consensus 94 ---tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~al~~~p~lllLDEPt~ 170 (500)
T TIGR02633 94 ---SVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSS 170 (500)
T ss_pred ---cHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Confidence 6777766543221 1 1122 22222322 111111 11122233345667777889999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCc
Q 015825 265 ARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSP 328 (399)
Q Consensus 265 ~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~ 328 (399)
++|+.+.+.+.+.|+++.++ ..++++++||++++...+++++.+.+|.++..+++.
T Consensus 171 ~LD~~~~~~l~~~l~~l~~~--------g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 226 (500)
T TIGR02633 171 SLTEKETEILLDIIRDLKAH--------GVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMS 226 (500)
T ss_pred CCCHHHHHHHHHHHHHHHhC--------CCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcc
Confidence 99999999999999886421 338899999999999999999999999887666544
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.7e-18 Score=174.43 Aligned_cols=202 Identities=16% Similarity=0.149 Sum_probs=142.8
Q ss_pred HHHHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecC-----CCccccccCCeeEEecC
Q 015825 112 EQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTT-----RAPRAMEKDGVHYHFTE 186 (399)
Q Consensus 112 ~l~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~tt-----r~~~~~~~~~i~yvfq~ 186 (399)
++.|.+|--....+.++...+|++.+|+|.||||||||+|.|+|.++|..| .+.... ..+..-...|+..++|+
T Consensus 13 ~i~K~FggV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G-~I~~~G~~~~~~sp~~A~~~GI~~V~QE 91 (500)
T COG1129 13 GISKSFGGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSG-EILIDGKPVAFSSPRDALAAGIATVHQE 91 (500)
T ss_pred cceEEcCCceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCc-eEEECCEEccCCCHHHHHhCCcEEEeec
Confidence 344556644444445566779999999999999999999999999999999 665432 23334445689999999
Q ss_pred hHHHHHHHhhhhhHHHHHHhcccc---C-CcHHHHHH----HHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChH
Q 015825 187 RSVMEKAIKDGKFLEFASVHGNLY---G-TSVEAVEA----VADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSME 257 (399)
Q Consensus 187 ~~lf~~~~~~~~~~E~~~~~~~~~---g-~~~~~i~~----~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~ll 257 (399)
..+++.+ ++.||+.+..... + .......+ .+.. +...-.+.....+.-.++|.+..+.++..++.++
T Consensus 92 l~L~p~L----sVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~~~~~v~~LsiaqrQ~VeIArAl~~~arll 167 (500)
T COG1129 92 LSLVPNL----SVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDIDPDTLVGDLSIAQRQMVEIARALSFDARVL 167 (500)
T ss_pred hhccCCc----cHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCChhhhhhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999998 9999986554321 1 22232222 2221 1110011111111112455666667888899999
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCC
Q 015825 258 ELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQT 326 (399)
Q Consensus 258 lLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~ 326 (399)
+|||||++|+....+.+.+.+++++++ ...+|+++|.++|+++.+|++.++.+|..+....
T Consensus 168 IlDEPTaaLt~~E~~~Lf~~ir~Lk~~--------Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 168 ILDEPTAALTVKETERLFDLIRRLKAQ--------GVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHhC--------CCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 999999999887778888888877642 4589999999999999999999999998876554
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.4e-18 Score=158.62 Aligned_cols=174 Identities=14% Similarity=0.084 Sum_probs=121.6
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|++++|+||||||||||+++|+|+.++..| .+....... .......++|+||++.+|+ . ++.+++
T Consensus 29 l~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~-~----tv~~~l 102 (207)
T cd03369 29 FKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEG-KIEIDGIDISTIPLEDLRSSLTIIPQDPTLFS-G----TIRSNL 102 (207)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCC-eEEECCEEhHHCCHHHHHhhEEEEecCCcccC-c----cHHHHh
Confidence 44568999999999999999999999999999888 554322111 1112346899999986553 2 666766
Q ss_pred HHhccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 015825 204 SVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKE 283 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~ 283 (399)
.+... .....+.+.++ ++..+..+....+++...+.+++.+|++++||||++++|+.+++.+.+.|+++..
T Consensus 103 ~~~~~---~~~~~~~~~l~------~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~ 173 (207)
T cd03369 103 DPFDE---YSDEEIYGALR------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFT 173 (207)
T ss_pred cccCC---CCHHHHHHHhh------ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcC
Confidence 54321 12233333332 1212222233345556667788999999999999999999999888888887421
Q ss_pred HHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCC
Q 015825 284 EIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQT 326 (399)
Q Consensus 284 ~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~ 326 (399)
..++++++|+++++.. +++++.+.+|.+...++
T Consensus 174 ---------~~tiii~th~~~~~~~-~d~v~~l~~g~i~~~g~ 206 (207)
T cd03369 174 ---------NSTILTIAHRLRTIID-YDKILVMDAGEVKEYDH 206 (207)
T ss_pred ---------CCEEEEEeCCHHHHhh-CCEEEEEECCEEEecCC
Confidence 2488999999998865 89999999887765543
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.5e-18 Score=169.42 Aligned_cols=186 Identities=15% Similarity=0.114 Sum_probs=134.0
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC-----ccccccCCeeEEecChHHHHHHHhhhhhHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA-----PRAMEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~-----~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~ 202 (399)
+...+|++.+|+|.||||||||+++|.|.+.|+.| .+....++ |..-...|+|+++|++.+++.+ |+.||
T Consensus 25 l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~G-eI~v~G~~v~~~sP~dA~~~GIGMVhQHF~Lv~~l----TV~EN 99 (501)
T COG3845 25 LSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSG-EIRVDGKEVRIKSPRDAIRLGIGMVHQHFMLVPTL----TVAEN 99 (501)
T ss_pred eeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcc-eEEECCEEeccCCHHHHHHcCCcEEeecccccccc----chhhh
Confidence 55679999999999999999999999999999999 66544333 2333345899999999999988 99999
Q ss_pred HHHhccc---cCCcHHHHHHHHHc-CCceEEecchhh----HHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHH
Q 015825 203 ASVHGNL---YGTSVEAVEAVADA-GKRCILDIDVQG----ARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQI 274 (399)
Q Consensus 203 ~~~~~~~---~g~~~~~i~~~~~~-g~~~vldld~~g----~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i 274 (399)
+.....- .......+++.+.+ ....=++++|.. +.--.+|+...+-+|...+++++|||||+-+-|...+++
T Consensus 100 iiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~vdp~~~V~dLsVG~qQRVEIlKaLyr~a~iLILDEPTaVLTP~E~~~l 179 (501)
T COG3845 100 IILGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADEL 179 (501)
T ss_pred hhhcCccccccccCHHHHHHHHHHHHHHhCCCCCccceeecCCcchhHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHH
Confidence 8775432 12233333333222 001111222211 111235666777799999999999999999977766777
Q ss_pred HHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCC
Q 015825 275 LKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQT 326 (399)
Q Consensus 275 ~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~ 326 (399)
.+.++.+.++ ..++|++||-++|+.+.+|++-++..|+.+....
T Consensus 180 f~~l~~l~~~--------G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 180 FEILRRLAAE--------GKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHHHHHHHC--------CCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 7777765532 4599999999999999999999999998765543
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.1e-18 Score=162.51 Aligned_cols=202 Identities=11% Similarity=0.053 Sum_probs=131.9
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-----cccceeeecCCCc--------cccccCCeeEEecChH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTTRAP--------RAMEKDGVHYHFTERS 188 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-----~~g~~i~~ttr~~--------~~~~~~~i~yvfq~~~ 188 (399)
+..+.+....+|++++|+||||||||||+++|+|+..+ ..| .+....... ......+++|+||++.
T Consensus 31 vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG-~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~ 109 (265)
T PRK14252 31 ALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEG-EIILHPDNVNILSPEVDPIEVRMRISMVFQKPN 109 (265)
T ss_pred eeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCccc-EEEEcCccccccccccCHHHHhccEEEEccCCc
Confidence 34444455669999999999999999999999999864 466 443221110 0112346899999976
Q ss_pred HHHHHHhhhhhHHHHHHhccccCCcH-----HHHHHHHHc-CCce----EEecchhhHHHHHcCCcceeEEEEcCCChHH
Q 015825 189 VMEKAIKDGKFLEFASVHGNLYGTSV-----EAVEAVADA-GKRC----ILDIDVQGARSVRASPLDAIFIFICPPSMEE 258 (399)
Q Consensus 189 lf~~~~~~~~~~E~~~~~~~~~g~~~-----~~i~~~~~~-g~~~----vldld~~g~~~l~~~~~~~~~ili~~P~lll 258 (399)
+|+ . ++.+++.+....++... +.+...+.. +... .++-....+....+++...+.+++.+|++++
T Consensus 110 ~~~-~----tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 184 (265)
T PRK14252 110 PFP-K----SIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCIARALATDPEILL 184 (265)
T ss_pred CCc-c----hHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 664 2 45666654322222211 122222221 1100 0000000111123445556678999999999
Q ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchh
Q 015825 259 LEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHS 338 (399)
Q Consensus 259 LDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~ 338 (399)
||||++++|+.+.+.+.+.|.++.. ..++++++|+++++...+++++.+.+|.+...++..+++..|....
T Consensus 185 lDEPt~gLD~~~~~~l~~~l~~l~~---------~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 255 (265)
T PRK14252 185 FDEPTSALDPIATASIEELISDLKN---------KVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIFIKPKNKQ 255 (265)
T ss_pred EeCCCccCCHHHHHHHHHHHHHHHh---------CCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCHH
Confidence 9999999999999999999887642 1388999999999999999999999999988887777766554433
|
|
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.3e-18 Score=157.88 Aligned_cols=179 Identities=14% Similarity=0.099 Sum_probs=117.0
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc-cccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA-MEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~-~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
....+....+|++++|+||||||||||+++|+|+.++..| .+......... .....++|+++...+++.+ ++.+
T Consensus 18 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~----tv~~ 92 (207)
T PRK13539 18 FSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAG-TIKLDGGDIDDPDVAEACHYLGHRNAMKPAL----TVAE 92 (207)
T ss_pred EeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEeCcchhhHhhcEEecCCCcCCCCC----cHHH
Confidence 3334455669999999999999999999999999999888 55432211110 1234578998775554433 6667
Q ss_pred HHHHhccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHH
Q 015825 202 FASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRN 280 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~ 280 (399)
++.+....++.....+.+.++. +.....+..+..+....+++...+.+++.+|++++||||++++|+.+.+.+.+.|.+
T Consensus 93 ~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~ 172 (207)
T PRK13539 93 NLEFWAAFLGGEELDIAAALEAVGLAPLAHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAELIRA 172 (207)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHcCCHHHHcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 6655433333333333333332 111111222222223345666677799999999999999999999999999999987
Q ss_pred HHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 281 AKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 281 ~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
+.++ ..++++++|+++++.. ++++.+
T Consensus 173 ~~~~--------~~tiii~sH~~~~~~~--~~~~~~ 198 (207)
T PRK13539 173 HLAQ--------GGIVIAATHIPLGLPG--ARELDL 198 (207)
T ss_pred HHHC--------CCEEEEEeCCchhhcc--CcEEee
Confidence 6432 2388999999988765 555444
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.6e-18 Score=155.99 Aligned_cols=173 Identities=17% Similarity=0.107 Sum_probs=115.1
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc---cccccCCeeEEecChHHHHHHHhhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
+....+....+|++++|+||||||||||+++|+|.+++..| .+....... .......++|+++...+++.+ +
T Consensus 16 ~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G-~v~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----t 90 (204)
T PRK13538 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAG-EVLWQGEPIRRQRDEYHQDLLYLGHQPGIKTEL----T 90 (204)
T ss_pred EEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEEcccchHHhhhheEEeCCccccCcCC----c
Confidence 33344455679999999999999999999999999999988 554322111 111234588999887666544 7
Q ss_pred hHHHHHHhccccCC-cHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHH
Q 015825 199 FLEFASVHGNLYGT-SVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILK 276 (399)
Q Consensus 199 ~~E~~~~~~~~~g~-~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~ 276 (399)
+.|++.+....++. ....+.+.++. +.....+..+..+....+++...+.+++.+|++++||||++++|+.+++.+.+
T Consensus 91 v~e~l~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~ 170 (204)
T PRK13538 91 ALENLRFYQRLHGPGDDEALWEALAQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEA 170 (204)
T ss_pred HHHHHHHHHHhcCccHHHHHHHHHHHcCCHHHhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHH
Confidence 77777665433331 22333333332 11111121222222334566667779999999999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCcceEEEeCCCHHHHH
Q 015825 277 RLRNAKEEIKQGKSSGIFDHILYNDKLEECY 307 (399)
Q Consensus 277 ~L~~~~~~l~~~~~~~~~t~Viv~hdleea~ 307 (399)
.|+++.++ ..++++++|+++..-
T Consensus 171 ~l~~~~~~--------~~tiii~sh~~~~i~ 193 (204)
T PRK13538 171 LLAQHAEQ--------GGMVILTTHQDLPVA 193 (204)
T ss_pred HHHHHHHC--------CCEEEEEecChhhhc
Confidence 99876421 238899999986654
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5e-18 Score=176.71 Aligned_cols=186 Identities=10% Similarity=0.050 Sum_probs=128.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----cccccCCeeEEecChH---HHHHHHhhhhhHH
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERS---VMEKAIKDGKFLE 201 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~---lf~~~~~~~~~~E 201 (399)
..+|++++|+||||||||||+++|+|+.++..| .+....+.. ......+++|+||++. .|+.+ ++.+
T Consensus 276 i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~----tv~e 350 (501)
T PRK11288 276 VRAGEIVGLFGLVGAGRSELMKLLYGATRRTAG-QVYLDGKPIDIRSPRDAIRAGIMLCPEDRKAEGIIPVH----SVAD 350 (501)
T ss_pred EeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCc-eEEECCEECCCCCHHHHHhCCCEEcCcCHhhCCCcCCC----CHHH
Confidence 459999999999999999999999999999888 665432211 1111246899999864 55544 6666
Q ss_pred HHHHhcccc----C--CcH----HHHHHHHHcCCc--eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 202 FASVHGNLY----G--TSV----EAVEAVADAGKR--CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 202 ~~~~~~~~~----g--~~~----~~i~~~~~~g~~--~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
++.+....+ + ... +.+.+.+..... ...+-.+..+....++++..+.+++.+|++++||||++++|+.
T Consensus 351 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrl~la~al~~~p~lllLDEPt~~LD~~ 430 (501)
T PRK11288 351 NINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVG 430 (501)
T ss_pred HhccccchhhcccccccChHHHHHHHHHHHHhcCcccCCccCccccCCHHHHHHHHHHHHHccCCCEEEEcCCCCCCCHh
Confidence 655422111 1 011 122222322110 1112222233334566677778999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCc
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSP 328 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~ 328 (399)
+++.+.+.|.++.++ ..++|+++||++++...+++++.+.+|.++..+++.
T Consensus 431 ~~~~l~~~l~~l~~~--------g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~ 481 (501)
T PRK11288 431 AKHEIYNVIYELAAQ--------GVAVLFVSSDLPEVLGVADRIVVMREGRIAGELARE 481 (501)
T ss_pred HHHHHHHHHHHHHhC--------CCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccc
Confidence 999999999886532 238999999999999999999999999888766544
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.4e-18 Score=160.82 Aligned_cols=203 Identities=14% Similarity=0.086 Sum_probs=132.8
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC-----CcccceeeecCCCc------cccccCCeeEEecChHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRAP------RAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~-----~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf 190 (399)
+....+....+|++++|+||||||||||+++|+|+.. +..| .+....... ......+++|+||++.+|
T Consensus 18 ~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G-~v~~~g~~i~~~~~~~~~~~~~i~~~~q~~~~~ 96 (250)
T PRK14266 18 ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEG-HIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPF 96 (250)
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCcc-EEEECCEEcccccccHHHHhhheEEEecCCccC
Confidence 3333445556899999999999999999999999853 2567 454322111 111234689999997766
Q ss_pred HHHHhhhhhHHHHHHhccccCC-cHHHHH----HHHHc-CCce----EEecchhhHHHHHcCCcceeEEEEcCCChHHHH
Q 015825 191 EKAIKDGKFLEFASVHGNLYGT-SVEAVE----AVADA-GKRC----ILDIDVQGARSVRASPLDAIFIFICPPSMEELE 260 (399)
Q Consensus 191 ~~~~~~~~~~E~~~~~~~~~g~-~~~~i~----~~~~~-g~~~----vldld~~g~~~l~~~~~~~~~ili~~P~lllLD 260 (399)
+ . ++.+++.+....++. ..+... +.++. +... .++.....+....+++...+.+++.+|++++||
T Consensus 97 ~-~----t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~llllD 171 (250)
T PRK14266 97 P-K----SIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMD 171 (250)
T ss_pred c-c----hHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 4 2 456666543222221 112121 22221 1100 001111112222345566667899999999999
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhh
Q 015825 261 ERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSV 339 (399)
Q Consensus 261 Epl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v 339 (399)
||++++|+.+...+.+.|+++.. ..++++++|+++++...+++++.+.+|.+...+++.++...|.....
T Consensus 172 EP~~gLD~~~~~~l~~~l~~~~~---------~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~~~~~~~~ 241 (250)
T PRK14266 172 EPCSALDPISTTKIEDLIHKLKE---------DYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFINPKDKRT 241 (250)
T ss_pred CCCccCCHHHHHHHHHHHHHHhc---------CCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHhCCCChHH
Confidence 99999999999999998887632 23889999999999999999888999999888887777666654443
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=4.8e-18 Score=181.39 Aligned_cols=188 Identities=19% Similarity=0.169 Sum_probs=138.0
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHHH
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~ 204 (399)
...+|+.++|+|+||||||||+|+|.|++.|..| .+.....+. ....++.++|+.|+.-+|. +++.||+.
T Consensus 495 ~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G-~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~-----gSI~eNi~ 568 (709)
T COG2274 495 EIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQG-RILLDGVDLNDIDLASLRRQVGYVLQDPFLFS-----GSIRENIA 568 (709)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEeHHhcCHHHHHhheeEEcccchhhc-----CcHHHHHh
Confidence 3468999999999999999999999999999999 665433221 1222456999999987664 37888887
Q ss_pred HhccccCCcHHHHHHHHH-cCCceEEecch-----------hhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 205 VHGNLYGTSVEAVEAVAD-AGKRCILDIDV-----------QGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~~~~-~g~~~vldld~-----------~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
+..-. .+.+++.+++. .+...++.--| .++...++|+...+.+++.+|++++|||+|+++|+++++
T Consensus 569 l~~p~--~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~ 646 (709)
T COG2274 569 LGNPE--ATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEA 646 (709)
T ss_pred cCCCC--CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHH
Confidence 75432 22333433322 12111110001 122334677788888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
.+.+.|.+.. ..+|+|+++|.+ .+++.+++++++++|++++.|+.+++...-
T Consensus 647 ~I~~~L~~~~---------~~~T~I~IaHRl-~ti~~adrIiVl~~Gkiv~~gs~~ell~~~ 698 (709)
T COG2274 647 IILQNLLQIL---------QGRTVIIIAHRL-STIRSADRIIVLDQGKIVEQGSHEELLAQG 698 (709)
T ss_pred HHHHHHHHHh---------cCCeEEEEEccc-hHhhhccEEEEccCCceeccCCHHHHHHhc
Confidence 9999998753 245999999987 566789999999999999999988877653
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=8.4e-18 Score=175.04 Aligned_cols=187 Identities=15% Similarity=0.144 Sum_probs=129.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----cccccCCeeEEecCh---HHHHHHHhhhhhHH
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTER---SVMEKAIKDGKFLE 201 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~---~lf~~~~~~~~~~E 201 (399)
..+|++++|+||||||||||+++|+|+.+|..| .+....... ......+++|+||++ .+++.+ ++.+
T Consensus 275 i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G-~I~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~~~~~~----tv~e 349 (501)
T PRK10762 275 LRKGEILGVSGLMGAGRTELMKVLYGALPRTSG-YVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLVLGM----SVKE 349 (501)
T ss_pred EcCCcEEEEecCCCCCHHHHHHHHhCCCCCCce-EEEECCEECCCCCHHHHHHCCCEEecCccccCCCcCCC----cHHH
Confidence 458999999999999999999999999999888 555422111 111124689999985 344444 6666
Q ss_pred HHHHhcc-----ccC-CcH----HHHHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 202 FASVHGN-----LYG-TSV----EAVEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 202 ~~~~~~~-----~~g-~~~----~~i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
++.+... .++ ... ..+.+.++. +.. ...+-.+..+....++++..+.+++.+|++++||||++++|+.
T Consensus 350 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqrv~lA~al~~~p~lllLDEPt~~LD~~ 429 (501)
T PRK10762 350 NMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGLLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVG 429 (501)
T ss_pred HhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCCccCchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCCCHh
Confidence 6654211 011 111 122333332 110 1122222233334566777778999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcc
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPK 329 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~ 329 (399)
+.+.+.+.|+++..+ ..++++++||++++...+++++.+.+|.++..+++.+
T Consensus 430 ~~~~l~~~l~~~~~~--------g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 481 (501)
T PRK10762 430 AKKEIYQLINQFKAE--------GLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQ 481 (501)
T ss_pred HHHHHHHHHHHHHHC--------CCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecccc
Confidence 999999999987532 3388999999999999999999999998887666554
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.8e-18 Score=159.56 Aligned_cols=178 Identities=16% Similarity=0.185 Sum_probs=119.1
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|++++|+||||||||||+++|+|..++..| .+....... .......++|+||++.+|+ . ++.+++
T Consensus 25 ~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~----tv~e~l 98 (220)
T cd03245 25 LTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG-SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFY-G----TLRDNI 98 (220)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC-eEEECCEEhHHCCHHHHHhhEEEeCCCCcccc-c----hHHHHh
Confidence 44569999999999999999999999999999888 554432211 0111245899999987664 3 666776
Q ss_pred HHhccccCCcHHHHHHHHHc-CCceEEecc-----------hhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-GKRCILDID-----------VQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g~~~vldld-----------~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+....+ ....+.+.++. +....++.. +..+....+++...+.+++.+|++++||||++++|+.++
T Consensus 99 ~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p~llllDEPt~~LD~~~~ 176 (220)
T cd03245 99 TLGAPLA--DDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSE 176 (220)
T ss_pred hcCCCCC--CHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 5432211 22222222221 110000000 011222234556666789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
..+.+.|+++.. + .++++++|+++.. ..+++++.+.+|.++.
T Consensus 177 ~~l~~~l~~~~~--------~-~tii~~sH~~~~~-~~~d~v~~l~~g~i~~ 218 (220)
T cd03245 177 ERLKERLRQLLG--------D-KTLIIITHRPSLL-DLVDRIIVMDSGRIVA 218 (220)
T ss_pred HHHHHHHHHhcC--------C-CEEEEEeCCHHHH-HhCCEEEEEeCCeEee
Confidence 999999987542 1 3889999999875 7888988888876653
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.8e-18 Score=155.13 Aligned_cols=175 Identities=17% Similarity=0.097 Sum_probs=117.3
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc---cccccCCeeEEecChHHHHHHHhhhhhHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~ 202 (399)
.+....+|++++|+|+||||||||+++|+|+.++..| .+....... ......+++|++|.+.+++.+ ++.++
T Consensus 19 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~----tv~e~ 93 (201)
T cd03231 19 LSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAG-RVLLNGGPLDFQRDSIARGLLYLGHAPGIKTTL----SVLEN 93 (201)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEecccccHHhhhheEEeccccccCCCc----CHHHH
Confidence 3345569999999999999999999999999999888 554322111 112234689999987665544 67777
Q ss_pred HHHhccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHH
Q 015825 203 ASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNA 281 (399)
Q Consensus 203 ~~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~ 281 (399)
+.+....+ ....+.+.++. +.....+-.+..+....+++...+.+++.+|++++||||++++|+.+++.+.+.+.++
T Consensus 94 l~~~~~~~--~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~ 171 (201)
T cd03231 94 LRFWHADH--SDEQVEEALARVGLNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGH 171 (201)
T ss_pred HHhhcccc--cHHHHHHHHHHcCChhhhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHH
Confidence 66543222 22333333332 1111111112222223455666777999999999999999999999999999988875
Q ss_pred HHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhc
Q 015825 282 KEEIKQGKSSGIFDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 282 ~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~ 315 (399)
..+ ..++++++|+..+....+.+.+.
T Consensus 172 ~~~--------g~tiii~sH~~~~~~~~~~~~~~ 197 (201)
T cd03231 172 CAR--------GGMVVLTTHQDLGLSEAGARELD 197 (201)
T ss_pred HhC--------CCEEEEEecCchhhhhccceeEe
Confidence 421 34889999998887776666543
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=99.68 E-value=4.7e-18 Score=196.66 Aligned_cols=196 Identities=14% Similarity=0.059 Sum_probs=142.5
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc---cccccCCeeEEecChHHHHHHHhhh
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
.+..+.+....+|++++|+||||||||||+++|+|+.+|..| .+....... ....+..++|+||+..+|+.+
T Consensus 944 ~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG-~I~i~G~dI~~~~~~~r~~IG~~pQ~~~L~~~L---- 1018 (2272)
T TIGR01257 944 PAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSG-TVLVGGKDIETNLDAVRQSLGMCPQHNILFHHL---- 1018 (2272)
T ss_pred eEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCce-EEEECCEECcchHHHHhhcEEEEecCCcCCCCC----
Confidence 334444455679999999999999999999999999999888 554322111 111234689999998777766
Q ss_pred hhHHHHHHhccccCCcHHHHH----HHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 198 KFLEFASVHGNLYGTSVEAVE----AVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~~~~~i~----~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
++.|++.+....++.+....+ +.++. ++....+..+..+....++++..+.+|+.+|++++||||++++|+.+++
T Consensus 1019 TV~E~L~f~~~lkg~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqKQRLsLArALi~~PkVLLLDEPTSGLDp~sr~ 1098 (2272)
T TIGR01257 1019 TVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHHKRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRR 1098 (2272)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHHHHH
Confidence 888888877666665433322 22322 1111112222233334566777888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccc
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKG 330 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~ 330 (399)
.+.+.|++++ + ..++++++|+++++...+++++.+.+|++...+++..+
T Consensus 1099 ~l~~lL~~l~-~--------g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~L 1147 (2272)
T TIGR01257 1099 SIWDLLLKYR-S--------GRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFL 1147 (2272)
T ss_pred HHHHHHHHHh-C--------CCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 9999998863 1 23889999999999999999999999998887776544
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.68 E-value=5.1e-18 Score=179.90 Aligned_cols=189 Identities=14% Similarity=0.151 Sum_probs=136.7
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
.+....+|+.++|+||||||||||++.|+|++ |..| .+.....+.. ...++.++|++|++.+|. +++.|
T Consensus 369 i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G-~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~-----~TI~e 441 (588)
T PRK11174 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQG-SLKINGIELRELDPESWRKHLSWVGQNPQLPH-----GTLRD 441 (588)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCc-EEEECCEecccCCHHHHHhheEEecCCCcCCC-----cCHHH
Confidence 33455699999999999999999999999999 7788 6654332221 122346999999987774 38889
Q ss_pred HHHHhccccCCcHHHHHHHHHc------------CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 202 FASVHGNLYGTSVEAVEAVADA------------GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~------------g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
|+.+... ..+.+++.++++. |....+.-.-..+...++|+...+.+++.+|++++||||++++|.+
T Consensus 442 NI~~g~~--~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~ 519 (588)
T PRK11174 442 NVLLGNP--DASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAH 519 (588)
T ss_pred HhhcCCC--CCCHHHHHHHHHHhCHHHHHHhcccccccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 9887532 2344555554432 1111111000112234567777888999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+++.+++.+.++.+ ..|+++++|.++ ....+|+++.+++|.++..|+.+++...
T Consensus 520 te~~i~~~l~~~~~---------~~TvIiItHrl~-~i~~aD~Iivl~~G~i~e~G~~~eL~~~ 573 (588)
T PRK11174 520 SEQLVMQALNAASR---------RQTTLMVTHQLE-DLAQWDQIWVMQDGQIVQQGDYAELSQA 573 (588)
T ss_pred HHHHHHHHHHHHhC---------CCEEEEEecChH-HHHhCCEEEEEeCCeEeecCCHHHHHhc
Confidence 99999998877531 238899999994 5567999999999999999987777644
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.1e-18 Score=158.50 Aligned_cols=186 Identities=18% Similarity=0.130 Sum_probs=124.9
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC----ccccccCCeeEEecChHHHHHHHhhhhhHHH
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~ 202 (399)
+....+|++++|+||||||||||+++|+|+.++..| .+...... ........++|+||++.+|+ . ++.++
T Consensus 21 ~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G-~v~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~----tv~~n 94 (236)
T cd03253 21 SFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSG-SILIDGQDIREVTLDSLRRAIGVVPQDTVLFN-D----TIGYN 94 (236)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCC-EEEECCEEhhhCCHHHHHhhEEEECCCChhhc-c----hHHHH
Confidence 344569999999999999999999999999999888 55442211 11112345899999987664 2 67777
Q ss_pred HHHhccccCCcHHHHHHHHHc-CCce-----------EEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 203 ASVHGNLYGTSVEAVEAVADA-GKRC-----------ILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 203 ~~~~~~~~g~~~~~i~~~~~~-g~~~-----------vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
+.+.... .....+...... +... .++-.+..+....+++...+.+++.+|++++||||++++|+.+
T Consensus 95 l~~~~~~--~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~llllDEP~~~LD~~~ 172 (236)
T cd03253 95 IRYGRPD--ATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHT 172 (236)
T ss_pred HhhcCCC--CCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 7654321 122222221111 1100 0000011122223455666779999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccc
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKG 330 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~ 330 (399)
++.+.+.|.++.+ ..++++++|+.+.+. .+++++.+.+|.+...+++.++
T Consensus 173 ~~~l~~~l~~~~~---------~~tiii~sh~~~~~~-~~d~~~~l~~g~i~~~~~~~~~ 222 (236)
T cd03253 173 EREIQAALRDVSK---------GRTTIVIAHRLSTIV-NADKIIVLKDGRIVERGTHEEL 222 (236)
T ss_pred HHHHHHHHHHhcC---------CCEEEEEcCCHHHHH-hCCEEEEEECCEEEeeCCHHHH
Confidence 9999888887532 237889999999885 4999999999988776654443
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.6e-18 Score=171.81 Aligned_cols=187 Identities=18% Similarity=0.197 Sum_probs=139.1
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|+.++|+|+||||||||++.|+|+.++..| .+.....+.+ ...++.++|+.|++-+|.. ++.||+
T Consensus 342 ~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G-~I~vng~~l~~l~~~~~~k~i~~v~Q~p~lf~g-----TireNi 415 (559)
T COG4988 342 LTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQG-EIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAG-----TIRENI 415 (559)
T ss_pred eEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCc-eEEECCccccccCHHHHHhHeeeeCCCCccccc-----cHHHHh
Confidence 34569999999999999999999999999999888 6664322211 2223468999999876653 788888
Q ss_pred HHhccccCCcHHHHHHHHHc-CCceEEecchhhH-----------HHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGA-----------RSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~-----------~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+...- .+.+++.++++. +...+++- |.|. ...++|++..+.+|+.++++.++|||++++|.+++
T Consensus 416 ~l~~~~--~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l~llDEpTA~LD~etE 492 (559)
T COG4988 416 LLARPD--ASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAETE 492 (559)
T ss_pred hccCCc--CCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCEEEecCCccCCCHhHH
Confidence 775432 345656555443 22222222 2222 22345666777799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+.+.+.+.++.++ -|+++++|++..+ ..+|+++++++|++++.+++.+++..
T Consensus 493 ~~i~~~l~~l~~~---------ktvl~itHrl~~~-~~~D~I~vld~G~l~~~g~~~~L~~~ 544 (559)
T COG4988 493 QIILQALQELAKQ---------KTVLVITHRLEDA-ADADRIVVLDNGRLVEQGTHEELSEK 544 (559)
T ss_pred HHHHHHHHHHHhC---------CeEEEEEcChHHH-hcCCEEEEecCCceeccCCHHHHhhc
Confidence 9999999987643 2888999998555 47999999999999999998877644
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=6.7e-18 Score=176.13 Aligned_cols=185 Identities=13% Similarity=0.113 Sum_probs=126.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----cccccCCeeEEecCh---HHHHHHHhhhhhHH
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTER---SVMEKAIKDGKFLE 201 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~---~lf~~~~~~~~~~E 201 (399)
..+|++++|+||||||||||+++|+|+.+|..| .+....... ......+++|+||++ .+++.+ ++.+
T Consensus 286 i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G-~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~----tv~e 360 (510)
T PRK09700 286 VCRGEILGFAGLVGSGRTELMNCLFGVDKRAGG-EIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNF----SIAQ 360 (510)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCC-eEEECCEECCCCCHHHHHHCCcEEccCccccCCCcCCC----cHHH
Confidence 458999999999999999999999999999888 555432111 111124689999973 355544 6667
Q ss_pred HHHHhccc--------cCC-cH----HHHHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhC
Q 015825 202 FASVHGNL--------YGT-SV----EAVEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (399)
Q Consensus 202 ~~~~~~~~--------~g~-~~----~~i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~l 266 (399)
++.+.... ++. .. ..+.+.++. +.. ...+-.+..+....++++..+.+++.+|++++||||++++
T Consensus 361 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~lAral~~~p~lLlLDEPt~~L 440 (510)
T PRK09700 361 NMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDEPTRGI 440 (510)
T ss_pred HhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCCccCccccCChHHHHHHHHHHHHhcCCCEEEECCCCCCc
Confidence 66543211 011 11 112233322 111 1112222233334566677778999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCC
Q 015825 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTS 327 (399)
Q Consensus 267 D~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~ 327 (399)
|+.+.+.+.+.|+++.++ ..++|+++||++++...+++++.+.+|.+...++.
T Consensus 441 D~~~~~~l~~~l~~l~~~--------g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~ 493 (510)
T PRK09700 441 DVGAKAEIYKVMRQLADD--------GKVILMVSSELPEIITVCDRIAVFCEGRLTQILTN 493 (510)
T ss_pred CHHHHHHHHHHHHHHHHC--------CCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecC
Confidence 999999999999986532 23889999999999999999999999987765443
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1e-17 Score=163.66 Aligned_cols=197 Identities=17% Similarity=0.139 Sum_probs=128.6
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccC-----CcccceeeecCCCc------cccccCCeeEEecChHHHHHHHh
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFP-----SMFGFSVSHTTRAP------RAMEKDGVHYHFTERSVMEKAIK 195 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~-----~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~lf~~~~~ 195 (399)
+....+|++++|+||||||||||+++|+|+++ +..| .+....... .......++|+||++.+|+ .
T Consensus 65 s~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G-~I~i~g~~i~~~~~~~~~~~~~i~~v~q~~~l~~-~-- 140 (305)
T PRK14264 65 SMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDG-SVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFP-K-- 140 (305)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCce-EEEECCEEcccccccHHHHhhceEEEccCCcccc-c--
Confidence 34456899999999999999999999999975 4677 454322111 1112346899999976654 2
Q ss_pred hhhhHHHHHHhccc------------cCCc-----HHHHHHHHHcC-Cc----eEEecchhhHHHHHcCCcceeEEEEcC
Q 015825 196 DGKFLEFASVHGNL------------YGTS-----VEAVEAVADAG-KR----CILDIDVQGARSVRASPLDAIFIFICP 253 (399)
Q Consensus 196 ~~~~~E~~~~~~~~------------~g~~-----~~~i~~~~~~g-~~----~vldld~~g~~~l~~~~~~~~~ili~~ 253 (399)
++.+++.+.... ++.. ...+...++.. .. -.++..+..+....++++..+.+++..
T Consensus 141 --tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~LAraL~~~ 218 (305)
T PRK14264 141 --SIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVD 218 (305)
T ss_pred --cHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccCCHHHHHHHHHHHHHhcC
Confidence 566666543211 1111 11122222211 00 001111111222244556677799999
Q ss_pred CChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHh-hcccCCeeeecCCCccccC
Q 015825 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKH-LGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 254 P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~i-i~~~~~~~~~~~~~~~~~~ 332 (399)
|++++||||++++|+.++..+.+.|+++.++ .++++++|+++.+...++++ +.+.+|.++..+++.+++.
T Consensus 219 p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~---------~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~~g~~~~~~~ 289 (305)
T PRK14264 219 PEVILMDEPASALDPIATSKIEDLIEELAEE---------YTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIFE 289 (305)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHhcC---------CEEEEEEcCHHHHHHhcCEEEEEecCCEEEEeCCHHHHHh
Confidence 9999999999999999999999999876431 27899999999999999986 4668898888777776666
Q ss_pred CCcchh
Q 015825 333 LPADHS 338 (399)
Q Consensus 333 ~p~~~~ 338 (399)
.|....
T Consensus 290 ~~~~~~ 295 (305)
T PRK14264 290 NPESQR 295 (305)
T ss_pred CcccHH
Confidence 554333
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=99.68 E-value=5e-18 Score=152.36 Aligned_cols=146 Identities=18% Similarity=0.162 Sum_probs=105.4
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||++.+|+ . ++.+++
T Consensus 23 ~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~~~~-~----tv~~~l 96 (173)
T cd03246 23 FSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSG-RVRLDGADISQWDPNELGDHVGYLPQDDELFS-G----SIAENI 96 (173)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCC-eEEECCEEcccCCHHHHHhheEEECCCCcccc-C----cHHHHC
Confidence 44568999999999999999999999999999888 554322111 1111345899999876553 1 555554
Q ss_pred HHhccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 015825 204 SVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKE 283 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~ 283 (399)
.+ ...+++...+.+++.+|++++||||++++|+.++..+.+.++++.+
T Consensus 97 --------LS------------------------~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~ 144 (173)
T cd03246 97 --------LS------------------------GGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKA 144 (173)
T ss_pred --------cC------------------------HHHHHHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHh
Confidence 01 1112223334478889999999999999999999999999987643
Q ss_pred HHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCe
Q 015825 284 EIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSI 320 (399)
Q Consensus 284 ~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~ 320 (399)
+ ..++++++|+++.+ ..+++++.+.+|.
T Consensus 145 ~--------~~tii~~sh~~~~~-~~~d~v~~l~~G~ 172 (173)
T cd03246 145 A--------GATRIVIAHRPETL-ASADRILVLEDGR 172 (173)
T ss_pred C--------CCEEEEEeCCHHHH-HhCCEEEEEECCC
Confidence 1 23889999999876 5788888777653
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-17 Score=159.80 Aligned_cols=186 Identities=13% Similarity=0.092 Sum_probs=122.6
Q ss_pred ccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHH
Q 015825 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 125 s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~ 204 (399)
..+....+|++++|+||||||||||+++|+|++++..| .+..... .+++++....++.+ ++.+++.
T Consensus 42 ~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G-~I~~~g~---------~~~~~~~~~~~~~~----tv~enl~ 107 (264)
T PRK13546 42 DISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVG-KVDRNGE---------VSVIAISAGLSGQL----TGIENIE 107 (264)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCce-EEEECCE---------EeEEecccCCCCCC----cHHHHHH
Confidence 34455679999999999999999999999999999888 5443221 23444443222222 4555554
Q ss_pred HhccccCCcHHHHHH----HHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHH
Q 015825 205 VHGNLYGTSVEAVEA----VADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLR 279 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~----~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~ 279 (399)
+....++........ .++. +....++..+..+....++++..+.+++.+|++++||||++++|+.+++.+.+.+.
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~ 187 (264)
T PRK13546 108 FKMLCMGFKRKEIKAMTPKIIEFSELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIY 187 (264)
T ss_pred HHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHH
Confidence 322222222222221 1211 11111111112222234455666778999999999999999999999889988888
Q ss_pred HHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 280 NAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 280 ~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
++.+ ...++|+++|+++++...+++++.+.+|.+...+++.++..
T Consensus 188 ~~~~--------~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (264)
T PRK13546 188 EFKE--------QNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLP 232 (264)
T ss_pred HHHH--------CCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHH
Confidence 7642 13388999999999998899999999999887777655544
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.9e-18 Score=157.21 Aligned_cols=175 Identities=18% Similarity=0.153 Sum_probs=116.8
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|++++|+||||||||||+++|+|+.++..| .+....... .......++|+||++.+|+ . ++.+++
T Consensus 35 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~----tv~~nl 108 (226)
T cd03248 35 FTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG-QVLLDGKPISQYEHKYLHSKVSLVGQEPVLFA-R----SLQDNI 108 (226)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCc-EEEECCCchHHcCHHHHHhhEEEEecccHHHh-h----hHHHHh
Confidence 44568999999999999999999999999999999 555432221 1112345899999987664 2 667776
Q ss_pred HHhccccCCcHHHHHH---------HHHc---CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEA---------VADA---GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~---------~~~~---g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+..... ....+.+ .++. +....++-.+..+....++++..+.+++.+|++++||||++++|+.++
T Consensus 109 ~~~~~~~--~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~~~p~llllDEPt~~LD~~~~ 186 (226)
T cd03248 109 AYGLQSC--SFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESE 186 (226)
T ss_pred ccccCCC--CHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHH
Confidence 5532211 1111111 1111 111111111111222345556667799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCe
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSI 320 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~ 320 (399)
+.+.+.+.++.+ ..++++++|+++++. .+++++.+.+|.
T Consensus 187 ~~l~~~l~~~~~---------~~tii~~sh~~~~~~-~~d~i~~l~~g~ 225 (226)
T cd03248 187 QQVQQALYDWPE---------RRTVLVIAHRLSTVE-RADQILVLDGGR 225 (226)
T ss_pred HHHHHHHHHHcC---------CCEEEEEECCHHHHH-hCCEEEEecCCc
Confidence 999998887532 138899999999885 588888887663
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-17 Score=174.67 Aligned_cols=189 Identities=11% Similarity=0.107 Sum_probs=128.8
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccC-CcccceeeecCCCc-----cccccCCeeEEecChH---HHHHHHhhhh
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFP-SMFGFSVSHTTRAP-----RAMEKDGVHYHFTERS---VMEKAIKDGK 198 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~-~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~---lf~~~~~~~~ 198 (399)
+...+|++++|+||||||||||+++|+|+.+ +..| .+....+.. ......+++|+||++. +++.+ +
T Consensus 283 l~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~~----t 357 (506)
T PRK13549 283 FSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEG-EIFIDGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVM----G 357 (506)
T ss_pred eEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCc-EEEECCEECCCCCHHHHHHCCCEEeCcchhhCCCcCCC----C
Confidence 4456999999999999999999999999988 4788 554322111 1111345899999853 44443 6
Q ss_pred hHHHHHHhc--cccC---CcH----HHHHHHHHcC-Cc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCC
Q 015825 199 FLEFASVHG--NLYG---TSV----EAVEAVADAG-KR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARG 267 (399)
Q Consensus 199 ~~E~~~~~~--~~~g---~~~----~~i~~~~~~g-~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD 267 (399)
+.+++.+.. ..++ ... ..+.+.++.. .. ...+..+..+....+++...+.+++.+|++++||||++++|
T Consensus 358 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrv~lA~al~~~p~lllLDEPt~~LD 437 (506)
T PRK13549 358 VGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGID 437 (506)
T ss_pred HHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcC
Confidence 666665421 1111 111 1222333321 11 11122222233345667777889999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcc
Q 015825 268 TETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPK 329 (399)
Q Consensus 268 ~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~ 329 (399)
+.+.+.+.+.+..+.++ ..++|+++||++++...+++++.+.+|.+...+++.+
T Consensus 438 ~~~~~~l~~~l~~l~~~--------g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 491 (506)
T PRK13549 438 VGAKYEIYKLINQLVQQ--------GVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHN 491 (506)
T ss_pred HhHHHHHHHHHHHHHHC--------CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEecccc
Confidence 99999999999886532 2388999999999999999999999998887666553
|
|
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.7e-18 Score=180.02 Aligned_cols=203 Identities=13% Similarity=0.124 Sum_probs=140.0
Q ss_pred HHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCc--ccceeeecCCCccccccCCeeEEecChHHHHH
Q 015825 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM--FGFSVSHTTRAPRAMEKDGVHYHFTERSVMEK 192 (399)
Q Consensus 115 ~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~--~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~ 192 (399)
+.++.+.+..+.+....+|++++|+||||||||||+++|+|..++. .| .+.....+........++|++|+..+++.
T Consensus 76 ~~~~~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG-~I~inG~~~~~~~~~~i~yv~Q~~~l~~~ 154 (659)
T PLN03211 76 RQIQERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTG-TILANNRKPTKQILKRTGFVTQDDILYPH 154 (659)
T ss_pred ccCCCCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeE-EEEECCEECchhhccceEEECcccccCCc
Confidence 3444445555555566799999999999999999999999998763 67 55543322211122458999999877766
Q ss_pred HHhhhhhHHHHHHhcccc---CCcHHHH----HHHHHc-CCceEE-----ecchhhHHHHHcCCcceeEEEEcCCChHHH
Q 015825 193 AIKDGKFLEFASVHGNLY---GTSVEAV----EAVADA-GKRCIL-----DIDVQGARSVRASPLDAIFIFICPPSMEEL 259 (399)
Q Consensus 193 ~~~~~~~~E~~~~~~~~~---g~~~~~i----~~~~~~-g~~~vl-----dld~~g~~~l~~~~~~~~~ili~~P~lllL 259 (399)
+ ++.|++.+...++ ....++. .+.++. ++.... +-...++....+++...+.+++.+|++++|
T Consensus 155 l----TV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~aL~~~P~iLlL 230 (659)
T PLN03211 155 L----TVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLIL 230 (659)
T ss_pred C----CHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHHHHHhCCCEEEE
Confidence 5 7888877654332 1222222 222222 111110 111122333456677777899999999999
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHH-HHHHHHHHhhcccCCeeeecCCCccc
Q 015825 260 EERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLE-ECYENLKKHLGLDGSIATNHQTSPKG 330 (399)
Q Consensus 260 DEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdle-ea~~~l~~ii~~~~~~~~~~~~~~~~ 330 (399)
|||++++|..++..+.+.|+++.++ ..++++++|+++ ++.+.+++++.+.+|+++..+++.+.
T Consensus 231 DEPtsgLD~~~~~~l~~~L~~l~~~--------g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~ 294 (659)
T PLN03211 231 DEPTSGLDATAAYRLVLTLGSLAQK--------GKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDA 294 (659)
T ss_pred eCCCCCcCHHHHHHHHHHHHHHHhC--------CCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHH
Confidence 9999999999999999999886531 238899999987 58888999999999999887776554
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.7e-17 Score=161.99 Aligned_cols=202 Identities=13% Similarity=0.133 Sum_probs=142.3
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeec-------CCCccccccCCeeEEecCh--HHHHHHHhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHT-------TRAPRAMEKDGVHYHFTER--SVMEKAIKD 196 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~t-------tr~~~~~~~~~i~yvfq~~--~lf~~~~~~ 196 (399)
.+....+|++++++|.||||||||-.+|.+++++. | .|... ++......++..-.|||++ ++-|.|
T Consensus 306 isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G-~I~F~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRm--- 380 (534)
T COG4172 306 ISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-G-EIRFDGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRM--- 380 (534)
T ss_pred ceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-c-eEEECCccccccChhhhhhhhhhceEEEeCCCCCCCccc---
Confidence 33455699999999999999999999999999885 6 45432 2221222234577999996 234554
Q ss_pred hhhHHHHHHhcccc--CCcHHHHHHHHHcCCceEEecchhhHHH-------HHcCCcceeEEEEcCCChHHHHHHHHhCC
Q 015825 197 GKFLEFASVHGNLY--GTSVEAVEAVADAGKRCILDIDVQGARS-------VRASPLDAIFIFICPPSMEELEERLRARG 267 (399)
Q Consensus 197 ~~~~E~~~~~~~~~--g~~~~~i~~~~~~g~~~vldld~~g~~~-------l~~~~~~~~~ili~~P~lllLDEpl~~lD 267 (399)
++.+.+.-..... ..+..+..+.+.+.+.. +.+|+..... .++|+...+.+++..|++.+||||++++|
T Consensus 381 -tV~qII~EGL~vh~~~ls~~eR~~rv~~aL~E-VGLDp~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD 458 (534)
T COG4172 381 -TVGQIIEEGLRVHEPKLSAAERDQRVIEALEE-VGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALD 458 (534)
T ss_pred -CHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHH-cCCChhHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhh
Confidence 4444433222221 12233222222221111 1234433332 35667777789999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhc
Q 015825 268 TETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSK 341 (399)
Q Consensus 268 ~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~ 341 (399)
..-+.++.+.|+.++++.+ ..+++++||+.-+-+.++++++|.+|+++.+|..+.++.+|.......
T Consensus 459 ~SVQaQvv~LLr~LQ~k~~-------LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G~~~~if~~P~~~YT~~ 525 (534)
T COG4172 459 RSVQAQVLDLLRDLQQKHG-------LSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAVFANPQHEYTRA 525 (534)
T ss_pred HHHHHHHHHHHHHHHHHhC-------CeEEEEeccHHHHHHhhceEEEEeCCEEeeeCCHHHHhcCCCcHHHHH
Confidence 9889999999999887653 388999999999999999999999999999999999999998665443
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.8e-18 Score=177.90 Aligned_cols=189 Identities=19% Similarity=0.189 Sum_probs=137.6
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
.+....+|+.++|+|+||||||||++.|+|+++|..| .+.....+. ....++.++|++|++.+|+. ++.+
T Consensus 360 i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G-~I~idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~-----Ti~~ 433 (592)
T PRK10790 360 INLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEG-EIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLAD-----TFLA 433 (592)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCc-eEEECCEEhhhCCHHHHHhheEEEccCCccccc-----hHHH
Confidence 3345569999999999999999999999999999988 665433221 11223568999999988764 7888
Q ss_pred HHHHhccccCCcHHHHHHHHHc-CCc-----------eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 202 FASVHGNLYGTSVEAVEAVADA-GKR-----------CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~-g~~-----------~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
|+.+.. ..+.+++.++++. +.. ..+.-.-......++|+...+.+++.+|++++||||++++|+.
T Consensus 434 NI~~~~---~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqrQRialARaLl~~~~illlDEpts~LD~~ 510 (592)
T PRK10790 434 NVTLGR---DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSG 510 (592)
T ss_pred HHHhCC---CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHH
Confidence 888764 2344555544432 111 1110000112223566677777999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+++.+.+.+.++.. .+|+|+++|+++. +..+|+++.+++|+++..|++.+++..
T Consensus 511 t~~~i~~~l~~~~~---------~~tvIivtHr~~~-l~~~D~ii~l~~G~i~~~G~~~~L~~~ 564 (592)
T PRK10790 511 TEQAIQQALAAVRE---------HTTLVVIAHRLST-IVEADTILVLHRGQAVEQGTHQQLLAA 564 (592)
T ss_pred HHHHHHHHHHHHhC---------CCEEEEEecchHH-HHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999998877431 2489999999844 557999999999999999998887744
|
|
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1e-17 Score=161.16 Aligned_cols=199 Identities=14% Similarity=0.056 Sum_probs=124.3
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccc-cCCeeEEecChHHHHHHHhhhhhH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAME-KDGVHYHFTERSVMEKAIKDGKFL 200 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~-~~~i~yvfq~~~lf~~~~~~~~~~ 200 (399)
+..+.+....+|++++|+||||||||||+++|+|+++|..| .+........... ...++|+||++.+.... ...+.
T Consensus 22 il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~~--~~~~~ 98 (272)
T PRK15056 22 ALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASG-KISILGQPTRQALQKNLVAYVPQSEEVDWSF--PVLVE 98 (272)
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEEhHHhhccceEEEeccccccccCC--Ccchh
Confidence 33334455569999999999999999999999999999888 5543322211111 13489999986431110 01233
Q ss_pred HHHHHh--cc--ccCCc----HHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 201 EFASVH--GN--LYGTS----VEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 201 E~~~~~--~~--~~g~~----~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
+++.+. .. .+... ...+...++. +.....+-.+..+....+++...+.+++.+|++++||||++++|+.++
T Consensus 99 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgG~~qrv~laraL~~~p~llllDEPt~~LD~~~~ 178 (272)
T PRK15056 99 DVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTE 178 (272)
T ss_pred hheecccccccccccCCCHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHH
Confidence 333211 00 01111 1122222222 111111111111222344556666789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+.+.+.|.++..+ ..++++++|+++++...+++++.+ +|.+...+++.++..
T Consensus 179 ~~l~~~L~~~~~~--------g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~~~~~~ 230 (272)
T PRK15056 179 ARIISLLRELRDE--------GKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPTETTFT 230 (272)
T ss_pred HHHHHHHHHHHhC--------CCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHhccC
Confidence 9999999876431 237899999999999889987666 788877777665543
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.5e-18 Score=180.93 Aligned_cols=187 Identities=16% Similarity=0.113 Sum_probs=136.6
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
.+....+|+.++|+|+||||||||++.|+|+++|..| .+.....+.+ ...++.++|++|++.+|.. ++.|
T Consensus 472 isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G-~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-----TI~e 545 (686)
T TIGR03797 472 VSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESG-SVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSG-----SIFE 545 (686)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-EEEECCEEcCcCCHHHHHhccEEEccCCccCcc-----cHHH
Confidence 3344569999999999999999999999999999999 6654332221 1223468999999887743 7889
Q ss_pred HHHHhccccCCcHHHHHHHHHc-CCceEEecch-----------hhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 202 FASVHGNLYGTSVEAVEAVADA-GKRCILDIDV-----------QGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~-g~~~vldld~-----------~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
|+.+... .+.+++.++++. +....+.--| ..+...++|+...+.+++.+|++++||||++++|+.
T Consensus 546 Ni~~~~~---~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~ 622 (686)
T TIGR03797 546 NIAGGAP---LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNR 622 (686)
T ss_pred HHhcCCC---CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 9877533 345555554443 2211110001 112334567777788999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+++.+.+.++++ ..|+|+++|.++. ...+|+++.+++|+++..|+.+++...
T Consensus 623 te~~i~~~L~~~-----------~~T~IiItHr~~~-i~~~D~Iivl~~G~iv~~G~~~~Ll~~ 674 (686)
T TIGR03797 623 TQAIVSESLERL-----------KVTRIVIAHRLST-IRNADRIYVLDAGRVVQQGTYDELMAR 674 (686)
T ss_pred HHHHHHHHHHHh-----------CCeEEEEecChHH-HHcCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999888763 1389999999855 467999999999999999987776643
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.9e-17 Score=155.95 Aligned_cols=194 Identities=13% Similarity=0.107 Sum_probs=123.8
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhc--cCCcccceeeecCCC-----ccccccCCeeEEecChHHHHHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKE--FPSMFGFSVSHTTRA-----PRAMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~--~~~~~g~~i~~ttr~-----~~~~~~~~i~yvfq~~~lf~~~~ 194 (399)
+..+.+....+|++++|+||||||||||+++|+|+ +++..| .+...... .......+++|+||++.+++.+
T Consensus 22 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~~~q~~~~~~~~- 99 (252)
T CHL00131 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEG-DILFKGESILDLEPEERAHLGIFLAFQYPIEIPGV- 99 (252)
T ss_pred eeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCc-eEEECCEEcccCChhhhheeeEEEEeccccccccc-
Confidence 33334455668999999999999999999999997 467778 55432211 1111112477899987666543
Q ss_pred hhhhhHHHHHHhccc----cC---CcH----HHHHHHHHc-CCc-eEEecchh-hHHHHHcCCcceeEEEEcCCChHHHH
Q 015825 195 KDGKFLEFASVHGNL----YG---TSV----EAVEAVADA-GKR-CILDIDVQ-GARSVRASPLDAIFIFICPPSMEELE 260 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~----~g---~~~----~~i~~~~~~-g~~-~vldld~~-g~~~l~~~~~~~~~ili~~P~lllLD 260 (399)
+..++..+.... .+ ... ..+.+.++. +.. ..++-.+. .+....+++...+.+++.+|++++||
T Consensus 100 ---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~~~p~llllD 176 (252)
T CHL00131 100 ---SNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAILD 176 (252)
T ss_pred ---cHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHHHHHHHHHHHHHcCCCEEEEc
Confidence 344443322110 01 011 112222221 111 01111111 12333455566677999999999999
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHH-HHHhhcccCCeeeecCCCc
Q 015825 261 ERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYEN-LKKHLGLDGSIATNHQTSP 328 (399)
Q Consensus 261 Epl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~-l~~ii~~~~~~~~~~~~~~ 328 (399)
||++++|+.+++.+.+.|.++.++ ..++|+++|+++.+... +++++.+.+|.++..+++.
T Consensus 177 EPt~~LD~~~~~~l~~~l~~~~~~--------g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~~ 237 (252)
T CHL00131 177 ETDSGLDIDALKIIAEGINKLMTS--------ENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDAE 237 (252)
T ss_pred CCcccCCHHHHHHHHHHHHHHHhC--------CCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecChh
Confidence 999999999999999999886431 23889999999888765 7899999999888777654
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.3e-17 Score=152.84 Aligned_cols=172 Identities=17% Similarity=0.118 Sum_probs=112.5
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc---cccccCCeeEEecChHHHHHHHhhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
+..+.+....+|++++|+||||||||||+++|+|.+++..| .+....... .......++|++|...+++.+ +
T Consensus 15 ~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~----t 89 (198)
T TIGR01189 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSG-EVRWNGTALAEQRDEPHRNILYLGHLPGLKPEL----S 89 (198)
T ss_pred EEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCcc-EEEECCEEcccchHHhhhheEEeccCcccccCC----c
Confidence 33334455679999999999999999999999999999888 554322211 111124588999886655543 6
Q ss_pred hHHHHHHhccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHH
Q 015825 199 FLEFASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~ 277 (399)
+.+++.+....++.....+.+.++. +....++..+..+....+++...+.+++.+|++++||||++++|..+++.+.+.
T Consensus 90 v~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~ 169 (198)
T TIGR01189 90 ALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGL 169 (198)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHcCCHHHhcCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHH
Confidence 7777665433333222233333332 221112222222333345566677799999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCcceEEEeCCCHHHH
Q 015825 278 LRNAKEEIKQGKSSGIFDHILYNDKLEEC 306 (399)
Q Consensus 278 L~~~~~~l~~~~~~~~~t~Viv~hdleea 306 (399)
+.++.++ ..++++++|+....
T Consensus 170 l~~~~~~--------~~tii~~sH~~~~~ 190 (198)
T TIGR01189 170 LRAHLAR--------GGIVLLTTHQDLGL 190 (198)
T ss_pred HHHHHhC--------CCEEEEEEcccccc
Confidence 8876421 23788999976443
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.1e-17 Score=173.58 Aligned_cols=195 Identities=13% Similarity=0.097 Sum_probs=126.6
Q ss_pred eccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHH--HHH--HHh
Q 015825 124 WSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSV--MEK--AIK 195 (399)
Q Consensus 124 ~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~l--f~~--~~~ 195 (399)
...+....+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||++.. +.. ...
T Consensus 20 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G-~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~ 98 (490)
T PRK10938 20 QLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSG-ERQSQFSHITRLSFEQLQKLVSDEWQRNNTDMLSPGEDDT 98 (490)
T ss_pred ccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCc-eEEECCcccccCCHHHHHHHhceeccCcchhhcccchhhc
Confidence 334455679999999999999999999999999999888 554321111 01112347899997532 110 000
Q ss_pred hhhhHHHHHHhccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHH
Q 015825 196 DGKFLEFASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQI 274 (399)
Q Consensus 196 ~~~~~E~~~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i 274 (399)
..++.++..+. ......+.+.++. +.....+..+..+....+++...+.+++.+|++++||||++++|+.+.+.+
T Consensus 99 ~~~~~~~~~~~----~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l 174 (490)
T PRK10938 99 GRTTAEIIQDE----VKDPARCEQLAQQFGITALLDRRFKYLSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQL 174 (490)
T ss_pred cccHHHhcccc----hhHHHHHHHHHHHcCCHhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHH
Confidence 11333332211 0111222333322 111111222222333456667777899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 275 LKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 275 ~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
.+.|.++.++ ..++++++|+++.+...+++++.+.+|.++..+++.++.
T Consensus 175 ~~~l~~~~~~--------g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 175 AELLASLHQS--------GITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred HHHHHHHHhc--------CCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 9999886532 238899999999999999999999999887766655443
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-17 Score=176.87 Aligned_cols=189 Identities=15% Similarity=0.113 Sum_probs=136.5
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|+.++|+||||||||||+++|+|+++|..| .+.....+. ....++.++|++|++.+|+. ++.+|+
T Consensus 364 l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G-~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-----Ti~~Ni 437 (582)
T PRK11176 364 FKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEG-EILLDGHDLRDYTLASLRNQVALVSQNVHLFND-----TIANNI 437 (582)
T ss_pred EEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCc-eEEECCEEhhhcCHHHHHhhceEEccCceeecc-----hHHHHH
Confidence 44569999999999999999999999999999999 665433221 11223568999999877753 788888
Q ss_pred HHhccccCCcHHHHHHHHHc------------CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA------------GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~------------g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+...- ....+++.++++. |....+.-.-..+...++|+...+.+++.+|++++||||++++|+.++
T Consensus 438 ~~~~~~-~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~ 516 (582)
T PRK11176 438 AYARTE-QYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE 516 (582)
T ss_pred hcCCCC-CCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHH
Confidence 764211 1234444444332 112211111111233456677777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
..+.+.+.++. ..+|+|+++|+++ ....+|+++.+++|+++..|+..+++..
T Consensus 517 ~~i~~~l~~~~---------~~~tvI~VtHr~~-~~~~~D~Ii~l~~g~i~e~g~~~~l~~~ 568 (582)
T PRK11176 517 RAIQAALDELQ---------KNRTSLVIAHRLS-TIEKADEILVVEDGEIVERGTHAELLAQ 568 (582)
T ss_pred HHHHHHHHHHh---------CCCEEEEEecchH-HHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99998888743 1348999999984 5677999999999999998987777644
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.6e-18 Score=156.37 Aligned_cols=179 Identities=15% Similarity=0.105 Sum_probs=120.0
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
+...+|++++|+||||||||||+++|+|..++..| .+....... .......++|+||++.+++ . ++.+++
T Consensus 25 ~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~q~~~l~~-~----tv~enl 98 (221)
T cd03244 25 FSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSG-SILIDGVDISKIGLHDLRSRISIIPQDPVLFS-G----TIRSNL 98 (221)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCC-EEEECCEEhHhCCHHHHhhhEEEECCCCcccc-c----hHHHHh
Confidence 44568999999999999999999999999999888 554432211 1112346899999977554 2 566766
Q ss_pred HHhccccCCcHHHHHHHHHc-CC-----------ceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-GK-----------RCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g~-----------~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+... .....+.+.++. +. ...++-.+..+....+++...+.+++.+|++++||||++++|+.++
T Consensus 99 ~~~~~---~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~llllDEP~~~LD~~~~ 175 (221)
T cd03244 99 DPFGE---YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETD 175 (221)
T ss_pred CcCCC---CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 54321 122222222211 11 0000111111222234555666799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQ 325 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~ 325 (399)
+.+.+.++++.. ..++++++|+++++. .+++++.+.+|.+...+
T Consensus 176 ~~l~~~l~~~~~---------~~tii~~sh~~~~~~-~~d~i~~l~~g~~~~~~ 219 (221)
T cd03244 176 ALIQKTIREAFK---------DCTVLTIAHRLDTII-DSDRILVLDKGRVVEFD 219 (221)
T ss_pred HHHHHHHHHhcC---------CCEEEEEeCCHHHHh-hCCEEEEEECCeEEecC
Confidence 999998887531 137889999998875 48999999888776554
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=99.66 E-value=5.5e-18 Score=152.71 Aligned_cols=152 Identities=14% Similarity=0.092 Sum_probs=109.0
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc---cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
+....+|++++|+||||||||||+++|+|+.++..| .+....... .......++|+||++.+|+ . ++.+++
T Consensus 22 ~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G-~i~~~g~~~~~~~~~~~~~i~~~~q~~~~~~-~----tv~~~i 95 (178)
T cd03247 22 SLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQG-EITLDGVPVSDLEKALSSLISVLNQRPYLFD-T----TLRNNL 95 (178)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCC-EEEECCEEHHHHHHHHHhhEEEEccCCeeec-c----cHHHhh
Confidence 344569999999999999999999999999999888 554332211 1112345899999876553 2 455554
Q ss_pred HHhccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 015825 204 SVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKE 283 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~ 283 (399)
. . .+....+++...+.+++.+|++++||||++++|+.+++.+.+.+.++.
T Consensus 96 --~---~------------------------~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~- 145 (178)
T cd03247 96 --G---R------------------------RFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVL- 145 (178)
T ss_pred --c---c------------------------cCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHc-
Confidence 0 0 011112233344457889999999999999999999999998888752
Q ss_pred HHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 284 EIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 284 ~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
+ ..++++++|+++++. .+++++.+.+|.+..
T Consensus 146 ~--------~~tii~~sh~~~~~~-~~d~~~~l~~g~i~~ 176 (178)
T cd03247 146 K--------DKTLIWITHHLTGIE-HMDKILFLENGKIIM 176 (178)
T ss_pred C--------CCEEEEEecCHHHHH-hCCEEEEEECCEEEe
Confidence 1 238899999998874 688988888887653
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-17 Score=180.93 Aligned_cols=188 Identities=19% Similarity=0.188 Sum_probs=139.9
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHHHH
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~ 204 (399)
...+|++++|+|||||||||+++.|.+++.|..| .+.....+.+ ...+..+|.|+|+|.+|.. ++.||+.
T Consensus 375 ~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G-~V~idG~di~~~~~~~lr~~iglV~QePvlF~~-----tI~eNI~ 448 (1228)
T KOG0055|consen 375 KIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSG-EVLIDGEDIRNLNLKWLRSQIGLVSQEPVLFAT-----TIRENIR 448 (1228)
T ss_pred EeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCc-eEEEcCccchhcchHHHHhhcCeeeechhhhcc-----cHHHHHh
Confidence 3468999999999999999999999999999999 6665433322 1223468999999977753 7889988
Q ss_pred HhccccCCcHHHHHHHHHcCC-------------ceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 205 VHGNLYGTSVEAVEAVADAGK-------------RCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~~~~~g~-------------~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
|... ....+++.++.+... ..+-+-.++ +...++|+...+.+++.+|++++|||+|++||++++
T Consensus 449 ~G~~--dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~q-LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se 525 (1228)
T KOG0055|consen 449 YGKP--DATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESE 525 (1228)
T ss_pred cCCC--cccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCC-CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHH
Confidence 7532 123444444432211 011111111 222356677777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
..+++.|.++... -|.+++.|.+...-. +|.++.+.+|.++..|++.+++..++
T Consensus 526 ~~Vq~ALd~~~~g---------rTTivVaHRLStIrn-aD~I~v~~~G~IvE~G~h~ELi~~~G 579 (1228)
T KOG0055|consen 526 RVVQEALDKASKG---------RTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQGTHDELIALGG 579 (1228)
T ss_pred HHHHHHHHHhhcC---------CeEEEEeeehhhhhc-cCEEEEEECCEEEEecCHHHHHhccc
Confidence 9999999886532 189999999976654 99999999999999999999998874
|
|
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.1e-17 Score=149.60 Aligned_cols=183 Identities=18% Similarity=0.175 Sum_probs=132.2
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhc
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHG 207 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~ 207 (399)
+...+|+.++|+|+||||||||++.|+|.++|+.| .+..+.+-...... +.|+ + +.+ +..||+.+.+
T Consensus 48 f~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G-~v~v~G~v~~li~l-g~Gf--~-----pel----TGreNi~l~~ 114 (249)
T COG1134 48 FEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSG-KVKVTGKVAPLIEL-GAGF--D-----PEL----TGRENIYLRG 114 (249)
T ss_pred EEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCc-eEEEcceEehhhhc-ccCC--C-----ccc----chHHHHHHHH
Confidence 56679999999999999999999999999999999 66554432212111 1221 1 233 7788998888
Q ss_pred cccCCcHHHHHHHHHc-----CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 015825 208 NLYGTSVEAVEAVADA-----GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAK 282 (399)
Q Consensus 208 ~~~g~~~~~i~~~~~~-----g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~ 282 (399)
.++|...+++.+..++ .+-.+++.....+......++...++...+|+++++||-++.-|+.-++.-.+++.++.
T Consensus 115 ~~~G~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F~~K~~~rl~e~~ 194 (249)
T COG1134 115 LILGLTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERLNELV 194 (249)
T ss_pred HHhCccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHHHHHHHHHHHHHH
Confidence 8899888877765543 12223333333333333444555567788999999999999988765555555565542
Q ss_pred HHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 283 EEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 283 ~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
++ .-++|+++||++.+.+.|++++.+++|.+...+++.+++
T Consensus 195 ~~--------~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi 235 (249)
T COG1134 195 EK--------NKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVI 235 (249)
T ss_pred Hc--------CCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHH
Confidence 21 238899999999999999999999999999999988665
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-17 Score=178.37 Aligned_cols=186 Identities=15% Similarity=0.111 Sum_probs=135.3
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|+.++|+||||||||||+++|+|+++|..| .+.....+.+ ...++.++|++|++.+|.. ++.||+
T Consensus 500 l~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G-~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-----Ti~eNi 573 (710)
T TIGR03796 500 LTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG-EILFDGIPREEIPREVLANSVAMVDQDIFLFEG-----TVRDNL 573 (710)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEeHHHCCHHHHHhheeEEecCChhhhc-----cHHHHh
Confidence 44569999999999999999999999999999999 6655433221 1224568999999887753 788988
Q ss_pred HHhccccCCcHHHHHHHHHc-C-----------CceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-G-----------KRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g-----------~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+... ..+.+++.++++. + ....+.-.-..+...++|+...+.+++.+|++++||||++++|..++
T Consensus 574 ~l~~~--~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te 651 (710)
T TIGR03796 574 TLWDP--TIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETE 651 (710)
T ss_pred hCCCC--CCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHH
Confidence 76432 2344444444332 1 11111111111223456677777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+.+.+.+.+ . ..|+|+++|.++.. ..+|+++.+++|+++..|+..++...
T Consensus 652 ~~i~~~l~~----~-------~~T~IiitHrl~~i-~~~D~Iivl~~G~i~~~G~~~~Ll~~ 701 (710)
T TIGR03796 652 KIIDDNLRR----R-------GCTCIIVAHRLSTI-RDCDEIIVLERGKVVQRGTHEELWAV 701 (710)
T ss_pred HHHHHHHHh----c-------CCEEEEEecCHHHH-HhCCEEEEEeCCEEEEecCHHHHHHc
Confidence 999988874 1 24899999998654 56999999999999999987776643
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.9e-17 Score=153.61 Aligned_cols=178 Identities=13% Similarity=0.029 Sum_probs=117.0
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceee-ecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHh
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS-HTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVH 206 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~-~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~ 206 (399)
....+|++++|+||||||||||+++|+|+.++..| .+. ...... .++ +...+++.+ ++.+++.+.
T Consensus 8 ~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG-~i~~~~~~~~------~~~---~~~~l~~~l----tv~enl~~~ 73 (213)
T PRK15177 8 FVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEG-DFIGLRGDAL------PLG---ANSFILPGL----TGEENARMM 73 (213)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCC-CEEEecCcee------ccc---cccccCCcC----cHHHHHHHH
Confidence 44568999999999999999999999999999999 443 211100 011 122334443 667777665
Q ss_pred ccccCCcHHHHHHHHHc--CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 015825 207 GNLYGTSVEAVEAVADA--GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEE 284 (399)
Q Consensus 207 ~~~~g~~~~~i~~~~~~--g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~ 284 (399)
...++.........+.. +.....+..+..+....+++...+.+++.+|++.+||||+.++|+.++..+.+.+.+..++
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD~~~~~~~~~~l~~~~~~ 153 (213)
T PRK15177 74 ASLYGLDGDEFSHFCYQLTQLEQCYTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGDNATQLRMQAALACQLQQ 153 (213)
T ss_pred HHHcCCCHHHHHHHHHHHhChhHHhhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHhhC
Confidence 44444443333222211 1100111111122223455666777999999999999999999998888888877543211
Q ss_pred HHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCc
Q 015825 285 IKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSP 328 (399)
Q Consensus 285 l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~ 328 (399)
.++++++|+++++...+++++.+.+|.++..++..
T Consensus 154 ---------~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 188 (213)
T PRK15177 154 ---------KGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLA 188 (213)
T ss_pred ---------CcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHH
Confidence 26789999999998899999999999888765543
|
|
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-17 Score=143.66 Aligned_cols=190 Identities=16% Similarity=0.163 Sum_probs=123.4
Q ss_pred CCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeee-----cCCCccccccCCeeEEecChHHHHH
Q 015825 118 GAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSH-----TTRAPRAMEKDGVHYHFTERSVMEK 192 (399)
Q Consensus 118 g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~-----ttr~~~~~~~~~i~yvfq~~~lf~~ 192 (399)
+...+....++...+|+.++|+||||||||||+++++.+++|..| .+.. ++-.+... +..++|+-|.+.+|..
T Consensus 14 ~~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G-~l~f~Ge~vs~~~pea~-Rq~VsY~~Q~paLfg~ 91 (223)
T COG4619 14 GDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSG-TLLFEGEDVSTLKPEAY-RQQVSYCAQTPALFGD 91 (223)
T ss_pred CCCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCc-eEEEcCccccccChHHH-HHHHHHHHcCcccccc
Confidence 334444445556679999999999999999999999999999998 4433 22222222 3348899999988864
Q ss_pred HHhhhhhHHHHHHhcccc--CCcHHHHHHHHHc-CC-ceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCC
Q 015825 193 AIKDGKFLEFASVHGNLY--GTSVEAVEAVADA-GK-RCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGT 268 (399)
Q Consensus 193 ~~~~~~~~E~~~~~~~~~--g~~~~~i~~~~~~-g~-~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~ 268 (399)
++.+|+.|.-..+ ...+......+.. ++ ..+++-....+....+|+...+.-|..-|++++|||+++++|+
T Consensus 92 -----tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE~TsALD~ 166 (223)
T COG4619 92 -----TVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDE 166 (223)
T ss_pred -----chhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceEEecCchhhcCh
Confidence 5667766543332 2233333333322 11 1111111101111112233333455667999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCee
Q 015825 269 ETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIA 321 (399)
Q Consensus 269 ~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~ 321 (399)
.+.+.+.+.+-++-++ ....++.+|||.+++....++++....|.+
T Consensus 167 ~nkr~ie~mi~~~v~~-------q~vAv~WiTHd~dqa~rha~k~itl~~G~~ 212 (223)
T COG4619 167 SNKRNIEEMIHRYVRE-------QNVAVLWITHDKDQAIRHADKVITLQPGHA 212 (223)
T ss_pred hhHHHHHHHHHHHhhh-------hceEEEEEecChHHHhhhhheEEEeccCcc
Confidence 9999998888877542 233678999999999999999888776643
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.5e-17 Score=171.45 Aligned_cols=186 Identities=12% Similarity=0.106 Sum_probs=125.8
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-cccceeeecCCCc-----cccccCCeeEEecChH---HHHHHHhhhh
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-MFGFSVSHTTRAP-----RAMEKDGVHYHFTERS---VMEKAIKDGK 198 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~---lf~~~~~~~~ 198 (399)
....+|++++|+||||||||||+++|+|+.+| ..| .+....+.. ......+++|+||+.. +++.+ +
T Consensus 281 ~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~l~~~~----t 355 (500)
T TIGR02633 281 FSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEG-NVFINGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPIL----G 355 (500)
T ss_pred eEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCe-EEEECCEECCCCCHHHHHhCCCEEcCcchhhCCcCCCC----C
Confidence 34469999999999999999999999999985 678 565432211 1111346899999863 45443 5
Q ss_pred hHHHHHHhc--cc---cCCcH----HHHHHHHHcCCc--eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCC
Q 015825 199 FLEFASVHG--NL---YGTSV----EAVEAVADAGKR--CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARG 267 (399)
Q Consensus 199 ~~E~~~~~~--~~---~g~~~----~~i~~~~~~g~~--~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD 267 (399)
+.+++.+.. .. +.... ..+.+.++.... ...+..+..+....++++..+.+++.+|++++||||++++|
T Consensus 356 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~la~al~~~p~lllLDEPt~~LD 435 (500)
T TIGR02633 356 VGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVD 435 (500)
T ss_pred HHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHHHHHHHHHhhCCCEEEEcCCCCCcC
Confidence 556554421 11 11111 123333332111 01121222233345666777779999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCC
Q 015825 268 TETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQT 326 (399)
Q Consensus 268 ~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~ 326 (399)
+.+++.+.+.+..+.++ ..++|+++||++++...+++++.+.+|.+....+
T Consensus 436 ~~~~~~l~~~l~~l~~~--------g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~ 486 (500)
T TIGR02633 436 VGAKYEIYKLINQLAQE--------GVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFV 486 (500)
T ss_pred HhHHHHHHHHHHHHHhC--------CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEc
Confidence 99999999999886532 2378999999999999999999999888775443
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-17 Score=176.28 Aligned_cols=189 Identities=16% Similarity=0.180 Sum_probs=137.7
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
.+....+|+.++|+||||||||||++.|+|+++|..| .+.....+.+ ...++.++|++|++.+|.. ++.|
T Consensus 359 i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-----ti~~ 432 (574)
T PRK11160 359 LSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQG-EILLNGQPIADYSEAALRQAISVVSQRVHLFSA-----TLRD 432 (574)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEEhhhCCHHHHHhheeEEcccchhhcc-----cHHH
Confidence 3344569999999999999999999999999999999 5554322211 1223468999999877753 7888
Q ss_pred HHHHhccccCCcHHHHHHHHHc-CCceEEecchhhHH-----------HHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 202 FASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGAR-----------SVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~-----------~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
|+.+... ..+.+++.++++. +...+++- |+|.. ..++|+...+.+++.+|++++||||++++|+.
T Consensus 433 Ni~~~~~--~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LSgGqrqRialARall~~~~ililDE~ts~lD~~ 509 (574)
T PRK11160 433 NLLLAAP--NASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEGLDAE 509 (574)
T ss_pred HhhcCCC--ccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 8877532 2344555554443 22222222 33222 23456667777999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+++.+++.+.++.+ ..|+++++|+++.. ..+|+++.+++|+++..++..++...
T Consensus 510 t~~~i~~~l~~~~~---------~~tviiitHr~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~ 563 (574)
T PRK11160 510 TERQILELLAEHAQ---------NKTVLMITHRLTGL-EQFDRICVMDNGQIIEQGTHQELLAQ 563 (574)
T ss_pred HHHHHHHHHHHHcC---------CCEEEEEecChhHH-HhCCEEEEEeCCeEEEeCCHHHHHhc
Confidence 99999999887531 23889999998765 56999999999999988887766544
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.4e-17 Score=150.42 Aligned_cols=162 Identities=12% Similarity=0.128 Sum_probs=114.0
Q ss_pred ccCccCCCCcEEEEEcCCCCCHHHHHhhhhhc--cCCcccceeeecCCCc-----cccccCCeeEEecChHHHHHHHhhh
Q 015825 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKE--FPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 125 s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~--~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
..+....+|++++|+||||||||||+++|+|. .++..| .+.....+. .......++|+||++.+++..
T Consensus 18 ~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~---- 92 (200)
T cd03217 18 GVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEG-EILFKGEDITDLPPEERARLGIFLAFQYPPEIPGV---- 92 (200)
T ss_pred ccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCcc-EEEECCEECCcCCHHHHhhCcEEEeecChhhccCc----
Confidence 34455669999999999999999999999999 467788 554322111 111123589999987666533
Q ss_pred hhHHHHHHhccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHH
Q 015825 198 KFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~ 277 (399)
++.++.... . ..+....+++...+.+++.+|++++||||++++|+.+.+.+.+.
T Consensus 93 ~~~~~l~~~---------------~-----------~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~ 146 (200)
T cd03217 93 KNADFLRYV---------------N-----------EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEV 146 (200)
T ss_pred cHHHHHhhc---------------c-----------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHH
Confidence 333332000 0 00111223344455588889999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCcceEEEeCCCHHHHHH-HHHHhhcccCCeeeecC
Q 015825 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYE-NLKKHLGLDGSIATNHQ 325 (399)
Q Consensus 278 L~~~~~~l~~~~~~~~~t~Viv~hdleea~~-~l~~ii~~~~~~~~~~~ 325 (399)
|.++.++ ..++++++|+++.+.. .+++++.+.+|.+...+
T Consensus 147 L~~~~~~--------~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~ 187 (200)
T cd03217 147 INKLREE--------GKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG 187 (200)
T ss_pred HHHHHHC--------CCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc
Confidence 9886431 2388999999998877 68999999999887665
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.6e-17 Score=146.41 Aligned_cols=138 Identities=14% Similarity=0.183 Sum_probs=100.5
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-----ccccCCeeEEecChHHHHHHHhhhhhH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-----AMEKDGVHYHFTERSVMEKAIKDGKFL 200 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-----~~~~~~i~yvfq~~~lf~~~~~~~~~~ 200 (399)
.+....+|++++|+||||||||||+++|+|+.++..| .+........ ......++|+||
T Consensus 19 i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G-~v~~~g~~~~~~~~~~~~~~~i~~~~q--------------- 82 (163)
T cd03216 19 VSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSG-EILVDGKEVSFASPRDARRAGIAMVYQ--------------- 82 (163)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCEECCcCCHHHHHhcCeEEEEe---------------
Confidence 3455679999999999999999999999999999888 4543221110 111223566655
Q ss_pred HHHHHhccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHH
Q 015825 201 EFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRN 280 (399)
Q Consensus 201 E~~~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~ 280 (399)
.+ ...+++...+.+++.+|++++||||++++|..+++.+.+.+++
T Consensus 83 -----------LS------------------------~G~~qrl~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~ 127 (163)
T cd03216 83 -----------LS------------------------VGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRR 127 (163)
T ss_pred -----------cC------------------------HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHH
Confidence 00 0111222233477889999999999999999999999999987
Q ss_pred HHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeee
Q 015825 281 AKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIAT 322 (399)
Q Consensus 281 ~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~ 322 (399)
+.++ ..++++++|+++++...+++++.+.+|.++
T Consensus 128 ~~~~--------~~tiii~sh~~~~~~~~~d~~~~l~~g~i~ 161 (163)
T cd03216 128 LRAQ--------GVAVIFISHRLDEVFEIADRVTVLRDGRVV 161 (163)
T ss_pred HHHC--------CCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 6431 238899999999988889999998888664
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.2e-17 Score=172.22 Aligned_cols=188 Identities=12% Similarity=0.098 Sum_probs=126.1
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----cccccCCeeEEecChH---HHHHHHhhhhhHH
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERS---VMEKAIKDGKFLE 201 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~---lf~~~~~~~~~~E 201 (399)
..+|++++|+||||||||||+++|+|+.+|..| .+....... ......+++|+||++. +|+.+ ++.+
T Consensus 286 i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~i~~v~q~~~~~~l~~~~----t~~~ 360 (510)
T PRK15439 286 VRAGEILGLAGVVGAGRTELAETLYGLRPARGG-RIMLNGKEINALSTAQRLARGLVYLPEDRQSSGLYLDA----PLAW 360 (510)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCc-EEEECCEECCCCCHHHHHhCCcEECCCChhhCCccCCC----cHHH
Confidence 358999999999999999999999999999888 554322111 1111246899999742 44433 4445
Q ss_pred HHHHh--c--cccCCcH---HHHHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 202 FASVH--G--NLYGTSV---EAVEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 202 ~~~~~--~--~~~g~~~---~~i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
++... . ..+.... +.+.+.++. +.. ...+-.+..+....++++..+.+++.+|++++||||++++|+.+.+
T Consensus 361 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lLlLDEPt~gLD~~~~~ 440 (510)
T PRK15439 361 NVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSARN 440 (510)
T ss_pred HHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEEEECCCCcCcChhHHH
Confidence 44221 0 0111111 122222322 111 1112222223333566677777999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccc
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKG 330 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~ 330 (399)
.+.+.|+++.++ ..++|+++||++++...+++++.+.+|.++..+++.++
T Consensus 441 ~l~~~l~~l~~~--------g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~ 490 (510)
T PRK15439 441 DIYQLIRSIAAQ--------NVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAI 490 (510)
T ss_pred HHHHHHHHHHhC--------CCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 999999887532 23899999999999999999999999988877665533
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=99.65 E-value=3.1e-17 Score=177.17 Aligned_cols=187 Identities=14% Similarity=0.146 Sum_probs=135.4
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHH
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~ 202 (399)
+....+|+.++|+||||||||||+++|+|+++|..| .+.....+.. ...++.++|++|++.+|.. ++.||
T Consensus 485 ~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G-~I~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~-----TI~eN 558 (694)
T TIGR03375 485 SLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEG-SVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYG-----TLRDN 558 (694)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEEhhhCCHHHHHhccEEECCChhhhhh-----hHHHH
Confidence 344569999999999999999999999999999999 6654332211 1223468999999887753 78899
Q ss_pred HHHhccccCCcHHHHHHHHHc-C-----------CceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 203 ASVHGNLYGTSVEAVEAVADA-G-----------KRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 203 ~~~~~~~~g~~~~~i~~~~~~-g-----------~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
+.+.... .+.+++.++++. + ....+.-.-..+...++|+...+.+++.+|++++||||++++|+.+
T Consensus 559 i~~~~~~--~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~t 636 (694)
T TIGR03375 559 IALGAPY--ADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRS 636 (694)
T ss_pred HhCCCCC--CCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHH
Confidence 8775321 344555444432 1 1111110001122335667777789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
++.+++.+.++.+ ..|+++++|+++. ...+|+++.+++|+++..|+.++++
T Consensus 637 e~~i~~~l~~~~~---------~~T~iiItHrl~~-~~~~D~iivl~~G~i~e~G~~~eLl 687 (694)
T TIGR03375 637 EERFKDRLKRWLA---------GKTLVLVTHRTSL-LDLVDRIIVMDNGRIVADGPKDQVL 687 (694)
T ss_pred HHHHHHHHHHHhC---------CCEEEEEecCHHH-HHhCCEEEEEeCCEEEeeCCHHHHH
Confidence 9999999887532 3489999999964 5789999999999999888876654
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=5.8e-17 Score=152.33 Aligned_cols=176 Identities=13% Similarity=0.096 Sum_probs=128.4
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHh
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVH 206 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~ 206 (399)
++...+|++++|+|.|||||||+.++|++++.|+.| .+.......... . ..... ..+.+.+...
T Consensus 33 sf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G-~i~f~g~~i~~~-----~-----~~~~~-----~~v~elL~~V 96 (268)
T COG4608 33 SFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSG-EILFEGKDITKL-----S-----KEERR-----ERVLELLEKV 96 (268)
T ss_pred eEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCc-eEEEcCcchhhc-----c-----hhHHH-----HHHHHHHHHh
Confidence 355679999999999999999999999999999999 665433321110 0 00000 0122222221
Q ss_pred ccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 015825 207 GNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIK 286 (399)
Q Consensus 207 ~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~ 286 (399)
+ .+.+.. .. .|..+...++|+...+.+++.+|++.++|||++++|...+.++...+..++++++
T Consensus 97 g----l~~~~~----~r--------yPhelSGGQrQRi~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~ 160 (268)
T COG4608 97 G----LPEEFL----YR--------YPHELSGGQRQRIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELG 160 (268)
T ss_pred C----CCHHHh----hc--------CCcccCchhhhhHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhC
Confidence 1 111111 01 1222233455666667799999999999999999999999999999999988764
Q ss_pred hccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhc
Q 015825 287 QGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSK 341 (399)
Q Consensus 287 ~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~ 341 (399)
. ++++++||+..+...++++.+|..|.++..+...+++..|.+.....
T Consensus 161 l-------t~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~~~~p~HpYTk~ 208 (268)
T COG4608 161 L-------TYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFSNPLHPYTKA 208 (268)
T ss_pred C-------eEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHHhhCCCCHHHHH
Confidence 4 89999999999999999999999999999999999999987766554
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.2e-17 Score=171.80 Aligned_cols=186 Identities=14% Similarity=0.023 Sum_probs=124.5
Q ss_pred eEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhh
Q 015825 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKF 199 (399)
Q Consensus 120 ~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~ 199 (399)
..+....+....+|++++|+||||||||||+++|+|+++|..| .+..... ..++|+||++.+++.+ ++
T Consensus 20 ~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G-~i~~~~~-------~~i~~v~Q~~~~~~~~----tv 87 (556)
T PRK11819 20 KQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEG-EARPAPG-------IKVGYLPQEPQLDPEK----TV 87 (556)
T ss_pred CeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEecCC-------CEEEEEecCCCCCCCC----cH
Confidence 3444445556679999999999999999999999999999888 5543211 2489999997665543 55
Q ss_pred HHHHHHhcc-c-------------cCCc--------------------------HHHHHHHHHcCCceEEecchhhHHHH
Q 015825 200 LEFASVHGN-L-------------YGTS--------------------------VEAVEAVADAGKRCILDIDVQGARSV 239 (399)
Q Consensus 200 ~E~~~~~~~-~-------------~g~~--------------------------~~~i~~~~~~g~~~vldld~~g~~~l 239 (399)
.+++.+... . +... ...+...+........+..+..+...
T Consensus 88 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~LSgG 167 (556)
T PRK11819 88 RENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGG 167 (556)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCCCcccCchhhcCHH
Confidence 555443210 0 0101 01111111110000011112222333
Q ss_pred HcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 240 RASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 240 ~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
.++++..+.+++.+|++++||||++++|+.+...+.+.|+++. .++|+++|+++.+...+++++.+.+|
T Consensus 168 qkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~-----------~tviiisHd~~~~~~~~d~i~~l~~g 236 (556)
T PRK11819 168 ERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP-----------GTVVAVTHDRYFLDNVAGWILELDRG 236 (556)
T ss_pred HHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC-----------CeEEEEeCCHHHHHhhcCeEEEEeCC
Confidence 4566677779999999999999999999999988888877631 28899999999999999999999998
Q ss_pred eee-ecCCCc
Q 015825 320 IAT-NHQTSP 328 (399)
Q Consensus 320 ~~~-~~~~~~ 328 (399)
.++ ..+...
T Consensus 237 ~i~~~~g~~~ 246 (556)
T PRK11819 237 RGIPWEGNYS 246 (556)
T ss_pred EEEEecCCHH
Confidence 875 444433
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-17 Score=151.09 Aligned_cols=171 Identities=18% Similarity=0.142 Sum_probs=114.1
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
+..+.+....+|++++|+||||||||||+++|+|+.++..| .+.... .++|+||++.+|+ . ++.+
T Consensus 20 il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G-~i~~~g---------~i~~~~q~~~l~~-~----t~~e 84 (204)
T cd03250 20 TLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG-SVSVPG---------SIAYVSQEPWIQN-G----TIRE 84 (204)
T ss_pred eeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCC-eEEEcC---------EEEEEecCchhcc-C----cHHH
Confidence 33344455679999999999999999999999999999999 555432 3899999987653 2 7778
Q ss_pred HHHHhccccCCcHHHHHHHHHc-CC-----------ceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 202 FASVHGNLYGTSVEAVEAVADA-GK-----------RCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~-g~-----------~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
++.+.... ......+..+. +. ...++..+..+....+++...+.+++.+|++.++|||++++|+.
T Consensus 85 nl~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~llllDEP~~~LD~~ 161 (204)
T cd03250 85 NILFGKPF---DEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAH 161 (204)
T ss_pred HhccCCCc---CHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHH
Confidence 77664322 11122221111 11 11111111122223345566667999999999999999999998
Q ss_pred cHHHHHHH-HHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 270 TEDQILKR-LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 270 ~~e~i~~~-L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
+.+.+.+. +....+ ...++|+++|+++.+.. +++++.+.+|
T Consensus 162 ~~~~l~~~ll~~~~~--------~~~tvi~~sh~~~~~~~-~d~i~~l~~G 203 (204)
T cd03250 162 VGRHIFENCILGLLL--------NNKTRILVTHQLQLLPH-ADQIVVLDNG 203 (204)
T ss_pred HHHHHHHHHHHHhcc--------CCCEEEEEeCCHHHHhh-CCEEEEEeCC
Confidence 87777664 443321 12388999999988776 8887777654
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.2e-17 Score=149.07 Aligned_cols=168 Identities=14% Similarity=0.076 Sum_probs=109.3
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
.+....+|++++|+||||||||||+++|+|..++..| .+.....+........++|+++...+++.+ ++.+++.+
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~g~~i~~~~~~~~~~~~~~~~~~~~~----tv~~~l~~ 93 (195)
T PRK13541 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSG-NIYYKNCNINNIAKPYCTYIGHNLGLKLEM----TVFENLKF 93 (195)
T ss_pred EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCcccChhhhhhEEeccCCcCCCccC----CHHHHHHH
Confidence 3445568999999999999999999999999999999 555433322111123478888876544444 67777766
Q ss_pred hccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 015825 206 HGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEE 284 (399)
Q Consensus 206 ~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~ 284 (399)
....++ ..+.+.+.++. +.....+-....+....+++...+.+++.+|++++||||++++|+.+++.+.+.++...+
T Consensus 94 ~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rl~la~al~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~- 171 (195)
T PRK13541 94 WSEIYN-SAETLYAAIHYFKLHDLLDEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLIVMKAN- 171 (195)
T ss_pred HHHhcc-cHHHHHHHHHHcCCHhhhccChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHh-
Confidence 443333 22233333322 211111111112222345556667799999999999999999999999999888875321
Q ss_pred HHhccCCCcceEEEeCCCHHHHH
Q 015825 285 IKQGKSSGIFDHILYNDKLEECY 307 (399)
Q Consensus 285 l~~~~~~~~~t~Viv~hdleea~ 307 (399)
...++++++|+.+...
T Consensus 172 -------~~~tiii~sh~~~~i~ 187 (195)
T PRK13541 172 -------SGGIVLLSSHLESSIK 187 (195)
T ss_pred -------CCCEEEEEeCCccccc
Confidence 1238889999876543
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.6e-17 Score=148.78 Aligned_cols=144 Identities=20% Similarity=0.239 Sum_probs=103.3
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|++++|+||||||||||+++|+|++++..| .+....... .......++|+||++.+|+ . ++.|++
T Consensus 23 ~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~~~~~~~~~~-~----t~~e~l 96 (171)
T cd03228 23 LTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSG-EILIDGVDLRDLDLESLRKNIAYVPQDPFLFS-G----TIRENI 96 (171)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCC-EEEECCEEhhhcCHHHHHhhEEEEcCCchhcc-c----hHHHHh
Confidence 44568999999999999999999999999999888 454322111 1111345889999875543 2 455553
Q ss_pred HHhccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 015825 204 SVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKE 283 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~ 283 (399)
++ ...++++..+.+++.+|++++||||++++|+.+++.+.+.+.++.+
T Consensus 97 -----------------LS---------------~G~~~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~ 144 (171)
T cd03228 97 -----------------LS---------------GGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAK 144 (171)
T ss_pred -----------------hC---------------HHHHHHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcC
Confidence 00 1112223334477889999999999999999999999888887531
Q ss_pred HHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 284 EIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 284 ~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
..++++++|+++.+.. +++++.+.+|
T Consensus 145 ---------~~tii~~sh~~~~~~~-~d~~~~l~~g 170 (171)
T cd03228 145 ---------GKTVIVIAHRLSTIRD-ADRIIVLDDG 170 (171)
T ss_pred ---------CCEEEEEecCHHHHHh-CCEEEEEcCC
Confidence 1388899999988865 8888777654
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.8e-15 Score=132.86 Aligned_cols=174 Identities=24% Similarity=0.227 Sum_probs=120.2
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccCC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGT 212 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g~ 212 (399)
|++++|+||||||||||+++|++...+.+-.....+++..+.. ...+++...+.|..+...+.+.+.+.+.+++||+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~yg~ 78 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPASAG---SENHIALSEQEFFTRAGQNLFALSWHANGLYYGV 78 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCCeEEEcCEECCCccchh---HHhheeEcHHHHHHHHHCCchhhHHHHhCCccCC
Confidence 6899999999999999999999987542221222345543332 2245666666677767777887777888999999
Q ss_pred cHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCC
Q 015825 213 SVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSG 292 (399)
Q Consensus 213 ~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~ 292 (399)
+. .+...+..+..++++........+++.......++..+++.+++-+|+..++..+.+.+.+++.+... + .
T Consensus 79 ~~-~~~~~l~~g~~VI~~G~~~~~~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~~~~~~i~~rl~r~~~----~---~ 150 (186)
T PRK10078 79 GI-EIDLWLHAGFDVLVNGSRAHLPQARARYQSALLPVCLQVSPEILRQRLENRGRENASEINARLARAAR----Y---Q 150 (186)
T ss_pred cH-HHHHHHhCCCEEEEeChHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCCCCHHHHHHHHHHhhh----h---c
Confidence 98 48888888887777654433344444444455555666779999999998877777888888855321 1 1
Q ss_pred cceEE-EeCC-CHHHHHHHHHHhhccc
Q 015825 293 IFDHI-LYND-KLEECYENLKKHLGLD 317 (399)
Q Consensus 293 ~~t~V-iv~h-dleea~~~l~~ii~~~ 317 (399)
.++.+ +.++ +++++.+.+..++..+
T Consensus 151 ~ad~~vi~~~~s~ee~~~~i~~~l~~~ 177 (186)
T PRK10078 151 PQDCHTLNNDGSLRQSVDTLLTLLHLS 177 (186)
T ss_pred cCCEEEEeCCCCHHHHHHHHHHHHhhc
Confidence 24644 4443 6999999998877654
|
|
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.4e-17 Score=148.49 Aligned_cols=171 Identities=9% Similarity=0.051 Sum_probs=111.8
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc---cccccCCeeEEecChHHHHHHHhhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
+....+....+|++++|+||||||||||+++|+|+.++..| .+....... .......++|++|...+++.. +
T Consensus 16 il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G-~v~~~g~~~~~~~~~~~~~i~~~~q~~~~~~~~----t 90 (200)
T PRK13540 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKG-EILFERQSIKKDLCTYQKQLCFVGHRSGINPYL----T 90 (200)
T ss_pred EEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe-eEEECCCccccCHHHHHhheEEeccccccCcCC----C
Confidence 33334455569999999999999999999999999999888 555432221 111234689999987665544 6
Q ss_pred hHHHHHHhccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHH
Q 015825 199 FLEFASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~ 277 (399)
+.++..+...... ....+.+.++. +.....+..+..+....+++...+.+++.+|++++||||++++|+.+++.+.+.
T Consensus 91 v~~~~~~~~~~~~-~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~~rv~laral~~~p~~lilDEP~~~LD~~~~~~l~~~ 169 (200)
T PRK13540 91 LRENCLYDIHFSP-GAVGITELCRLFSLEHLIDYPCGLLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITK 169 (200)
T ss_pred HHHHHHHHHhcCc-chHHHHHHHHHcCCchhhhCChhhcCHHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHH
Confidence 7777665421111 11223333332 111111211222222345566677799999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCcceEEEeCCCHHHH
Q 015825 278 LRNAKEEIKQGKSSGIFDHILYNDKLEEC 306 (399)
Q Consensus 278 L~~~~~~l~~~~~~~~~t~Viv~hdleea 306 (399)
|+++.++ ..++++++|+.+..
T Consensus 170 l~~~~~~--------~~tiii~sh~~~~~ 190 (200)
T PRK13540 170 IQEHRAK--------GGAVLLTSHQDLPL 190 (200)
T ss_pred HHHHHHc--------CCEEEEEeCCchhc
Confidence 9886421 33788999986443
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.2e-17 Score=171.62 Aligned_cols=187 Identities=16% Similarity=0.177 Sum_probs=141.9
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc----cccCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA----MEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~----~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
..+|++++|+||||+||||+++.|..++.|..| .|.....+.+. ..++.+|+|-|+|.+|.. ++.||+.|
T Consensus 491 i~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG-~IllDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~-----sI~eNI~Y 564 (716)
T KOG0058|consen 491 IRPGEVVALVGPSGSGKSTIASLLLRFYDPTSG-RILLDGVPISDINHKYLRRKIGLVGQEPVLFSG-----SIRENIAY 564 (716)
T ss_pred eCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCC-eEEECCeehhhcCHHHHHHHeeeeeccceeecc-----cHHHHHhc
Confidence 469999999999999999999999999999999 55544333221 223569999999988854 78899988
Q ss_pred hccccCCcHHHHHHHHHcCC-c-eEEe--------cchhh--HHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 206 HGNLYGTSVEAVEAVADAGK-R-CILD--------IDVQG--ARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 206 ~~~~~g~~~~~i~~~~~~g~-~-~vld--------ld~~g--~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
... ..+.+++..+.+... . .+.. +...| +...++|+...+.+|+.+|.+++|||.|++||.+++..
T Consensus 565 G~~--~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~l 642 (716)
T KOG0058|consen 565 GLD--NATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYL 642 (716)
T ss_pred CCC--CCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHH
Confidence 755 455666665443211 1 1111 11111 11235677778889999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
+++.|.+..+. -|++++.|-+ .+++.+++++++++|++++.|+..+++..|
T Consensus 643 Vq~aL~~~~~~---------rTVlvIAHRL-STV~~Ad~Ivvi~~G~V~E~G~h~eLl~~~ 693 (716)
T KOG0058|consen 643 VQEALDRLMQG---------RTVLVIAHRL-STVRHADQIVVIDKGRVVEMGTHDELLSKP 693 (716)
T ss_pred HHHHHHHhhcC---------CeEEEEehhh-hHhhhccEEEEEcCCeEEecccHHHHhhCc
Confidence 99999876533 2888999988 456688999999999999999999999887
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.1e-16 Score=151.45 Aligned_cols=194 Identities=13% Similarity=0.074 Sum_probs=120.4
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhcc--CCcccceeeecCCCcc-----ccccCCeeEEecChHHHHHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEF--PSMFGFSVSHTTRAPR-----AMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~--~~~~g~~i~~ttr~~~-----~~~~~~i~yvfq~~~lf~~~~ 194 (399)
+..+.+....+|++++|+||||||||||+++|+|+. ++..| .+........ .....+++|++|++.+++.+
T Consensus 16 ~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~~~q~~~~~~~~- 93 (248)
T PRK09580 16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGG-TVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGV- 93 (248)
T ss_pred eeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCce-EEEECCCccccCCHHHHhhcceEEEecCchhccch-
Confidence 333344556699999999999999999999999995 57788 5544322211 11124589999987665533
Q ss_pred hhhhhHHHHHHh-ccc--c-C---CcH----HHHHHHHHc-CCc-eEEecchh-hHHHHHcCCcceeEEEEcCCChHHHH
Q 015825 195 KDGKFLEFASVH-GNL--Y-G---TSV----EAVEAVADA-GKR-CILDIDVQ-GARSVRASPLDAIFIFICPPSMEELE 260 (399)
Q Consensus 195 ~~~~~~E~~~~~-~~~--~-g---~~~----~~i~~~~~~-g~~-~vldld~~-g~~~l~~~~~~~~~ili~~P~lllLD 260 (399)
+..++.... ... + . ... +.+.+.++. +.. ...+..+. .+....+++...+.+++.+|++++||
T Consensus 94 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illLD 170 (248)
T PRK09580 94 ---SNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILD 170 (248)
T ss_pred ---hHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 112221110 000 0 0 011 111111111 000 00000000 12223345566677999999999999
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHH-HHHhhcccCCeeeecCCCc
Q 015825 261 ERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYEN-LKKHLGLDGSIATNHQTSP 328 (399)
Q Consensus 261 Epl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~-l~~ii~~~~~~~~~~~~~~ 328 (399)
||++++|+.+.+.+.+.++++..+ ..++++++|+++.+... +++++.+.+|.++..+++.
T Consensus 171 EPt~~LD~~~~~~l~~~l~~l~~~--------~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~ 231 (248)
T PRK09580 171 ESDSGLDIDALKIVADGVNSLRDG--------KRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFT 231 (248)
T ss_pred CCCccCCHHHHHHHHHHHHHHHhC--------CCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHH
Confidence 999999999999999888876421 23889999999887765 6888888888887766544
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.9e-17 Score=177.72 Aligned_cols=187 Identities=18% Similarity=0.162 Sum_probs=135.4
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|+.++|+||||||||||++.|+|+++|..| .+.....+.. ...++.++|++|++.+|.. ++.||+
T Consensus 495 l~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G-~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~g-----TI~eNi 568 (708)
T TIGR01193 495 LTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSG-EILLNGFSLKDIDRHTLRQFINYLPQEPYIFSG-----SILENL 568 (708)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCc-EEEECCEEHHHcCHHHHHHheEEEecCceehhH-----HHHHHH
Confidence 44568999999999999999999999999999999 6654432221 1223468999999887753 788998
Q ss_pred HHhccccCCcHHHHHHHHHc------------CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA------------GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~------------g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+.... ..+.+++.++++. |....+.-.-..+...++|+...+.+++.+|++++|||||+++|..++
T Consensus 569 ~l~~~~-~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te 647 (708)
T TIGR01193 569 LLGAKE-NVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITE 647 (708)
T ss_pred hccCCC-CCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHH
Confidence 875221 2334444443332 111111111112233456777778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+.+.+.+..++ ..|+|+++|+++. ...+|+++.+++|+++..|+..++..
T Consensus 648 ~~i~~~L~~~~----------~~T~IiitHr~~~-~~~~D~i~~l~~G~i~~~G~~~~L~~ 697 (708)
T TIGR01193 648 KKIVNNLLNLQ----------DKTIIFVAHRLSV-AKQSDKIIVLDHGKIIEQGSHDELLD 697 (708)
T ss_pred HHHHHHHHHhc----------CCEEEEEecchHH-HHcCCEEEEEECCEEEEECCHHHHHh
Confidence 99988887531 2389999999864 57899999999999998888776654
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=99.64 E-value=2e-17 Score=149.34 Aligned_cols=158 Identities=15% Similarity=0.104 Sum_probs=105.1
Q ss_pred ccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhH
Q 015825 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFL 200 (399)
Q Consensus 125 s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~ 200 (399)
+.+....+|++++|+||||||||||+++|+|++++..| .+........ ......++|+|| .
T Consensus 17 ~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G-~v~~~g~~~~~~~~~~~~~~i~~~~q---~----------- 81 (180)
T cd03214 17 DLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSG-EILLDGKDLASLSPKELARKIAYVPQ---A----------- 81 (180)
T ss_pred eeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEECCcCCHHHHHHHHhHHHH---H-----------
Confidence 33445569999999999999999999999999999888 5543221110 001112445444 0
Q ss_pred HHHHHhccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHH
Q 015825 201 EFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRN 280 (399)
Q Consensus 201 E~~~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~ 280 (399)
... .+.. +. ... .+..+....+++...+.+++.+|++.+||||++++|+.+.+.+.+.+.+
T Consensus 82 --l~~----~gl~-~~----~~~--------~~~~LS~G~~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~ 142 (180)
T cd03214 82 --LEL----LGLA-HL----ADR--------PFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRR 142 (180)
T ss_pred --HHH----cCCH-hH----hcC--------CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHH
Confidence 000 0110 00 000 0001111223344455688899999999999999999999999999988
Q ss_pred HHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 281 AKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 281 ~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
+..+. ..++++++|+++++...+++++.+.+|.+..
T Consensus 143 ~~~~~-------~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 178 (180)
T cd03214 143 LARER-------GKTVVMVLHDLNLAARYADRVILLKDGRIVA 178 (180)
T ss_pred HHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 65431 2388999999999988999999998887653
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=99.64 E-value=3e-17 Score=156.55 Aligned_cols=188 Identities=11% Similarity=0.034 Sum_probs=123.3
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
.+....+|++++|+|+||||||||+++|+|++++..| .+....... .......++|+||++.+|+. ++.+
T Consensus 40 isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G-~i~i~g~~i~~~~~~~~~~~i~~v~q~~~l~~~-----tv~~ 113 (257)
T cd03288 40 VKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDG-KIVIDGIDISKLPLHTLRSRLSIILQDPILFSG-----SIRF 113 (257)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCC-eEEECCEEhhhCCHHHHhhhEEEECCCCccccc-----HHHH
Confidence 3345569999999999999999999999999999888 554322111 11113458999999766542 4445
Q ss_pred HHHHhccccCCcHHHHHHHHHc------------CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 202 FASVHGNLYGTSVEAVEAVADA------------GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~------------g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
+...... .....+...+.. +....++-....+....+++...+.+++.+|++++||||++++|+.
T Consensus 114 nl~~~~~---~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~llllDEPt~gLD~~ 190 (257)
T cd03288 114 NLDPECK---CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMA 190 (257)
T ss_pred hcCcCCC---CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 4432111 011111111110 1111111111112223445566677899999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+++.+.+.+.++.+ ..++++++|+++.+.. +++++.+.+|.++..+++.++..
T Consensus 191 ~~~~l~~~l~~~~~---------~~tiii~sh~~~~~~~-~dri~~l~~G~i~~~g~~~~~~~ 243 (257)
T cd03288 191 TENILQKVVMTAFA---------DRTVVTIAHRVSTILD-ADLVLVLSRGILVECDTPENLLA 243 (257)
T ss_pred HHHHHHHHHHHhcC---------CCEEEEEecChHHHHh-CCEEEEEECCEEEEeCCHHHHHh
Confidence 98888888876421 2488999999998875 99999999999887776655543
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.1e-17 Score=172.81 Aligned_cols=196 Identities=10% Similarity=0.096 Sum_probs=134.1
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc--------cccCCeeEEecChHHHHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA--------MEKDGVHYHFTERSVMEKA 193 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~--------~~~~~i~yvfq~~~lf~~~ 193 (399)
+..+.+....+|++++|+||||||||||+++|+|++++..| .+.....+... .....++|+||++.+|+..
T Consensus 23 il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G-~i~~~g~~i~~~~~~~~~~~~~~~i~~v~q~~~l~~~~ 101 (648)
T PRK10535 23 VLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSG-TYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHL 101 (648)
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe-EEEECCEEcCcCCHHHHHHHHhccEEEEeCCcccCCCC
Confidence 33334455669999999999999999999999999999888 55443222110 1134689999998777654
Q ss_pred HhhhhhHHHHHHhccccCCcHHHHH----HHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCC
Q 015825 194 IKDGKFLEFASVHGNLYGTSVEAVE----AVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGT 268 (399)
Q Consensus 194 ~~~~~~~E~~~~~~~~~g~~~~~i~----~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~ 268 (399)
++.|++.+.....+....... +.++. +....++..+..+....+++...+.+|+.+|++++||||++++|+
T Consensus 102 ----tv~enl~~~~~~~~~~~~~~~~~~~~~l~~lgl~~~~~~~~~~LS~Gq~qrv~LAraL~~~P~lLllDEP~~gLD~ 177 (648)
T PRK10535 102 ----TAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDS 177 (648)
T ss_pred ----CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCH
Confidence 566666543322232222222 22221 111111222222223345566677799999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 269 ETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 269 ~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
.+++.+.+.++++.++ ..++++++|+++.+ ..+++++.+.+|+++..+++.+..
T Consensus 178 ~s~~~l~~ll~~l~~~--------g~tilivsH~~~~~-~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 178 HSGEEVMAILHQLRDR--------GHTVIIVTHDPQVA-AQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHHHHHHHHhc--------CCEEEEECCCHHHH-HhCCEEEEEECCEEEeecCccccc
Confidence 9999999999876531 23889999999876 469999999999999888777664
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.1e-17 Score=171.03 Aligned_cols=187 Identities=18% Similarity=0.173 Sum_probs=137.4
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHHH
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~ 204 (399)
...+|+.++++|||||||||+++.|.+++.+..| .+.....+. ....++.++|++|++.+|.. ++.+|+.
T Consensus 351 ~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G-~I~idg~dI~~i~~~~lr~~I~~V~Qd~~LF~~-----TI~~NI~ 424 (567)
T COG1132 351 SIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSG-EILIDGIDIRDISLDSLRKRIGIVSQDPLLFSG-----TIRENIA 424 (567)
T ss_pred EEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCC-eEEECCEehhhcCHHHHHHhccEEcccceeecc-----cHHHHHh
Confidence 3569999999999999999999999999999888 554322111 12223458999999887762 8889988
Q ss_pred HhccccCCcHHHHHHHHHcC------------CceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 205 VHGNLYGTSVEAVEAVADAG------------KRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~~~~~g------------~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
+.... .+.+++.++++.. ....+.-.-..+...++|+...+.+++.+|++++|||+|+++|..++.
T Consensus 425 ~g~~~--at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARall~~~~ILILDEaTSalD~~tE~ 502 (567)
T COG1132 425 LGRPD--ATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALDTETEA 502 (567)
T ss_pred cCCCC--CCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHHhcCCCEEEEeccccccCHHhHH
Confidence 76432 3445555544332 111111001112334677778888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
.+++.+..+.+ + -|.+++.|.+... ..+|+++++++|+++..|++++++..
T Consensus 503 ~I~~~l~~l~~--------~-rT~iiIaHRlsti-~~aD~IiVl~~G~i~e~G~h~eLl~~ 553 (567)
T COG1132 503 LIQDALKKLLK--------G-RTTLIIAHRLSTI-KNADRIIVLDNGRIVERGTHEELLAK 553 (567)
T ss_pred HHHHHHHHHhc--------C-CEEEEEeccHhHH-HhCCEEEEEECCEEEEecCHHHHHHc
Confidence 99999986431 1 1788899999555 45999999999999999999888765
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=4.3e-17 Score=172.92 Aligned_cols=188 Identities=18% Similarity=0.218 Sum_probs=133.7
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
.+....+|+.++|+|+||||||||++.|+|+++|..| .+.....+.. ...++.++|++|++.+|.. ++.+
T Consensus 354 inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~-----Ti~~ 427 (588)
T PRK13657 354 VSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSG-RILIDGTDIRTVTRASLRRNIAVVFQDAGLFNR-----SIED 427 (588)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC-EEEECCEEhhhCCHHHHHhheEEEecCcccccc-----cHHH
Confidence 3344569999999999999999999999999999988 6654332211 1223468999999887753 7888
Q ss_pred HHHHhccccCCcHHHHHHHHHc------------CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 202 FASVHGNLYGTSVEAVEAVADA------------GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~------------g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
|+.+... ..+.+++..+++. |....+.-.-..+...++|+...+.+++.+|++++||||++++|+.
T Consensus 428 Ni~~~~~--~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq~QRialARall~~~~iliLDEpts~LD~~ 505 (588)
T PRK13657 428 NIRVGRP--DATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVE 505 (588)
T ss_pred HHhcCCC--CCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHH
Confidence 8877532 1234444433322 1111111000112223566677778999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
+++.+.+.+..... ..|+++++|+++. .+.+|+++.+.+|.+...++..++.
T Consensus 506 t~~~i~~~l~~~~~---------~~tvIiitHr~~~-~~~~D~ii~l~~G~i~~~g~~~~l~ 557 (588)
T PRK13657 506 TEAKVKAALDELMK---------GRTTFIIAHRLST-VRNADRILVFDNGRVVESGSFDELV 557 (588)
T ss_pred HHHHHHHHHHHHhc---------CCEEEEEEecHHH-HHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999998876431 2389999999865 5679999999999999888877665
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.7e-17 Score=167.03 Aligned_cols=188 Identities=11% Similarity=0.064 Sum_probs=122.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----cccccCCeeEEecChH---HHHHH-HhhhhhH
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERS---VMEKA-IKDGKFL 200 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~---lf~~~-~~~~~~~ 200 (399)
..+|++++|+||||||||||+++|+|+.+|..| .+....... ......+++|+||++. +|+.+ .....+.
T Consensus 271 i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~i~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~~~~~~~ 349 (491)
T PRK10982 271 LHKGEILGIAGLVGAKRTDIVETLFGIREKSAG-TITLHGKKINNHNANEAINHGFALVTEERRSTGIYAYLDIGFNSLI 349 (491)
T ss_pred EeCCcEEEEecCCCCCHHHHHHHHcCCCcCCcc-EEEECCEECCCCCHHHHHHCCCEEcCCchhhCCcccCCcHHHheeh
Confidence 459999999999999999999999999999888 555422111 1111345889998753 34322 0001122
Q ss_pred HHHHHhccccCC-cH----HHHHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 201 EFASVHGNLYGT-SV----EAVEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 201 E~~~~~~~~~g~-~~----~~i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
+++.+....++. .. +.+...++. +.. ...+..+..+....++++..+.+++.+|++++||||++++|+.+++.
T Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~ 429 (491)
T PRK10982 350 SNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFE 429 (491)
T ss_pred hhhhhhcccccccCcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHH
Confidence 323222111221 11 122222222 110 01122222233345666677779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCC
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQT 326 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~ 326 (399)
+.+.+..+.++ ..++|+++||++++...+++++.+.+|.++...+
T Consensus 430 ~~~~l~~l~~~--------~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~ 474 (491)
T PRK10982 430 IYQLIAELAKK--------DKGIIIISSEMPELLGITDRILVMSNGLVAGIVD 474 (491)
T ss_pred HHHHHHHHHHC--------CCEEEEECCChHHHHhhCCEEEEEECCEEEEEEc
Confidence 99999886532 2389999999999999999999999998875443
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.8e-17 Score=169.89 Aligned_cols=177 Identities=14% Similarity=0.117 Sum_probs=121.9
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChH--HHHHHHhhhhhHHHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERS--VMEKAIKDGKFLEFASV 205 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~--lf~~~~~~~~~~E~~~~ 205 (399)
....+|++++|+||||||||||+++|+|+++|..| .+....+ ..++|++|++. +++.+ ++.+++.+
T Consensus 340 ~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G-~i~~~~~-------~~i~~~~q~~~~~~~~~~----t~~~~~~~ 407 (530)
T PRK15064 340 LLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSG-TVKWSEN-------ANIGYYAQDHAYDFENDL----TLFDWMSQ 407 (530)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCc-------eEEEEEcccccccCCCCC----cHHHHHHH
Confidence 44569999999999999999999999999999888 5543221 24899999863 22222 55555443
Q ss_pred hccccCCcHHHHHHHHHcC-Cc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 015825 206 HGNLYGTSVEAVEAVADAG-KR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKE 283 (399)
Q Consensus 206 ~~~~~g~~~~~i~~~~~~g-~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~ 283 (399)
... .......+...++.. .. ...+..+..+....++++..+.+++.+|++++||||++++|+.+.+.+.+.++++
T Consensus 408 ~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-- 484 (530)
T PRK15064 408 WRQ-EGDDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY-- 484 (530)
T ss_pred hcc-CCccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--
Confidence 211 111223333333331 10 1112222223334556667777999999999999999999999988888887753
Q ss_pred HHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeee-ecCCCc
Q 015825 284 EIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIAT-NHQTSP 328 (399)
Q Consensus 284 ~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~-~~~~~~ 328 (399)
+ .++|+++||++.+...+++++.+.+|.++ ..+++.
T Consensus 485 --------~-~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~ 521 (530)
T PRK15064 485 --------E-GTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYE 521 (530)
T ss_pred --------C-CEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHH
Confidence 1 28899999999999999999999988876 445443
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.63 E-value=5.2e-17 Score=171.61 Aligned_cols=175 Identities=14% Similarity=0.088 Sum_probs=122.1
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcc
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGN 208 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~ 208 (399)
...+|++++|+||||||||||+++|+|+++|..| .+... ..++|++|+...+..+ ++.+++.+...
T Consensus 361 ~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G-~I~~~---------~~i~y~~Q~~~~~~~~----tv~e~l~~~~~ 426 (590)
T PRK13409 361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEG-EVDPE---------LKISYKPQYIKPDYDG----TVEDLLRSITD 426 (590)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEEe---------eeEEEecccccCCCCC----cHHHHHHHHhh
Confidence 3468999999999999999999999999999888 55432 1389999986554333 67777655322
Q ss_pred ccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHh
Q 015825 209 LYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQ 287 (399)
Q Consensus 209 ~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~ 287 (399)
.++. ...+.+.++. +.....+-.+..+....+|++..+.+++.+|++++||||++++|..++..+.+.|+++.++.
T Consensus 427 ~~~~-~~~~~~~L~~l~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~-- 503 (590)
T PRK13409 427 DLGS-SYYKSEIIKPLQLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEER-- 503 (590)
T ss_pred hcCh-HHHHHHHHHHCCCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC--
Confidence 2221 1122223322 11111122222233334566677779999999999999999999999999999999876432
Q ss_pred ccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCC
Q 015825 288 GKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQT 326 (399)
Q Consensus 288 ~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~ 326 (399)
..++++++||++++...+++++.+.+ .+...+.
T Consensus 504 -----g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 504 -----EATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred -----CCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 23889999999999999999888875 4443333
|
|
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.8e-17 Score=166.38 Aligned_cols=184 Identities=16% Similarity=0.092 Sum_probs=121.6
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
.++...+|++++|+||||||||||+++|+|+.+|..| .+....... ++.....+++.+ ++.+++.+
T Consensus 43 VSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sG-eI~I~G~~~---------~i~~~~~l~~~l----TV~EnL~l 108 (549)
T PRK13545 43 ISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKG-TVDIKGSAA---------LIAISSGLNGQL----TGIENIEL 108 (549)
T ss_pred eEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCce-EEEECCEee---------eEEeccccCCCC----cHHHHHHh
Confidence 3345569999999999999999999999999999888 554322110 111111122222 55666554
Q ss_pred hccccCCcHHHHHH----HHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHH
Q 015825 206 HGNLYGTSVEAVEA----VADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRN 280 (399)
Q Consensus 206 ~~~~~g~~~~~i~~----~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~ 280 (399)
....++.......+ .++. +....++-.+..+....++++..+.+++.+|++++||||++++|+.++..+.+.|.+
T Consensus 109 ~~~~~~~~~~e~~e~i~elLe~lgL~~~ld~~~~~LSGGQrQRVaLArAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~e 188 (549)
T PRK13545 109 KGLMMGLTKEKIKEIIPEIIEFADIGKFIYQPVKTYSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNE 188 (549)
T ss_pred hhhhcCCCHHHHHHHHHHHHHHcCChhHhhCCcccCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH
Confidence 33223333332222 2211 111111111122222345666677799999999999999999999999999998887
Q ss_pred HHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 281 AKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 281 ~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
+.++ ..++++++|+++++...+++++.+.+|.+...+++.++.
T Consensus 189 l~~~--------G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~ 231 (549)
T PRK13545 189 FKEQ--------GKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVV 231 (549)
T ss_pred HHhC--------CCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 6421 348899999999999999999999999988777765554
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.6e-17 Score=144.71 Aligned_cols=144 Identities=19% Similarity=0.186 Sum_probs=104.2
Q ss_pred ccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHH
Q 015825 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 125 s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~ 204 (399)
..+....+|++++|+||||||||||+++|+|++++..| .+....+ ..++|++|++.++ . .++.+++.
T Consensus 19 ~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G-~i~~~~~-------~~i~~~~q~~~~~-~----~tv~~nl~ 85 (166)
T cd03223 19 DLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSG-RIGMPEG-------EDLLFLPQRPYLP-L----GTLREQLI 85 (166)
T ss_pred cCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCC-------ceEEEECCCCccc-c----ccHHHHhh
Confidence 34455679999999999999999999999999999888 5544221 3489999987543 2 26777765
Q ss_pred HhccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 015825 205 VHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEE 284 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~ 284 (399)
+. .. ..+....+++...+.+++.+|++++||||++++|+.+.+.+.+.+.++
T Consensus 86 ~~-~~------------------------~~LS~G~~~rv~laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--- 137 (166)
T cd03223 86 YP-WD------------------------DVLSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKEL--- 137 (166)
T ss_pred cc-CC------------------------CCCCHHHHHHHHHHHHHHcCCCEEEEECCccccCHHHHHHHHHHHHHh---
Confidence 42 00 011112233444455788899999999999999999998888888763
Q ss_pred HHhccCCCcceEEEeCCCHHHHHHHHHHhhcccC
Q 015825 285 IKQGKSSGIFDHILYNDKLEECYENLKKHLGLDG 318 (399)
Q Consensus 285 l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~ 318 (399)
..++++++|+.+.. ..+++++.+.+
T Consensus 138 --------~~tiiivsh~~~~~-~~~d~i~~l~~ 162 (166)
T cd03223 138 --------GITVISVGHRPSLW-KFHDRVLDLDG 162 (166)
T ss_pred --------CCEEEEEeCChhHH-hhCCEEEEEcC
Confidence 13889999998654 57777776654
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=99.62 E-value=8.8e-17 Score=173.65 Aligned_cols=189 Identities=16% Similarity=0.163 Sum_probs=136.3
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|+.++|+|+||||||||+++|+|+++|..| .+.....+.. ...++.++|++|++.+|.. ++.||+
T Consensus 478 l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G-~I~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~-----ti~eNi 551 (694)
T TIGR01846 478 LDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHG-QVLVDGVDLAIADPAWLRRQMGVVLQENVLFSR-----SIRDNI 551 (694)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECCEehhhCCHHHHHHhCeEEccCCeehhh-----hHHHHH
Confidence 44568999999999999999999999999999989 6654332221 1223458999999877753 788888
Q ss_pred HHhccccCCcHHHHHHHHHc------------CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA------------GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~------------g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+... ..+.+++.++++. |....++-....+...++|+...+.+++.+|++++||||++++|+.++
T Consensus 552 ~~~~~--~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~ 629 (694)
T TIGR01846 552 ALCNP--GAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESE 629 (694)
T ss_pred hcCCC--CCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHH
Confidence 76432 1234444433322 222222211112233456667777799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
+.+.+.+.++. ...|+++++|+++.. ..+++++.+.+|+++..|+..++....
T Consensus 630 ~~i~~~l~~~~---------~~~t~i~itH~~~~~-~~~d~ii~l~~G~i~~~g~~~~l~~~~ 682 (694)
T TIGR01846 630 ALIMRNMREIC---------RGRTVIIIAHRLSTV-RACDRIIVLEKGQIAESGRHEELLALQ 682 (694)
T ss_pred HHHHHHHHHHh---------CCCEEEEEeCChHHH-HhCCEEEEEeCCEEEEeCCHHHHHHcC
Confidence 99999998742 134899999999765 569999999999999988877766543
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=6.1e-17 Score=175.20 Aligned_cols=187 Identities=18% Similarity=0.121 Sum_probs=132.2
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHH
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~ 202 (399)
+....+|+.++|+||||||||||++.|.|+++|..| .+.....+.. ...++.++|++|++.+|.. ++.||
T Consensus 501 sl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G-~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~g-----TIreN 574 (711)
T TIGR00958 501 TFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGG-QVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSG-----SVREN 574 (711)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCC-EEEECCEEHHhcCHHHHHhhceEEecCcccccc-----CHHHH
Confidence 344569999999999999999999999999999999 6654333221 1223458999999877753 88899
Q ss_pred HHHhccccCCcHHHHHHHHHc-CCceEE-------e--cch--hhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 203 ASVHGNLYGTSVEAVEAVADA-GKRCIL-------D--IDV--QGARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 203 ~~~~~~~~g~~~~~i~~~~~~-g~~~vl-------d--ld~--~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
+.+.... .+.+++.++++. +...++ | +.. ......++|+...+.+++.+|++++||||++++|.++
T Consensus 575 I~~g~~~--~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~t 652 (711)
T TIGR00958 575 IAYGLTD--TPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAEC 652 (711)
T ss_pred HhcCCCC--CCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHH
Confidence 8875322 234455444432 111111 1 000 1122335667777789999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
++.+++ ... . ...|+++++|+++. ...+|+++.+++|+++..|++.++...
T Consensus 653 e~~i~~-~~~----~------~~~TvIiItHrl~~-i~~aD~IivL~~G~ive~Gt~~eL~~~ 703 (711)
T TIGR00958 653 EQLLQE-SRS----R------ASRTVLLIAHRLST-VERADQILVLKKGSVVEMGTHKQLMED 703 (711)
T ss_pred HHHHHH-hhc----c------CCCeEEEEeccHHH-HHhCCEEEEEECCEEEEeeCHHHHHhC
Confidence 877776 111 1 13489999999965 567999999999999999988777654
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.6e-17 Score=146.13 Aligned_cols=131 Identities=14% Similarity=0.066 Sum_probs=97.8
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhc
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHG 207 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~ 207 (399)
....+|++++|+||||||||||+++|+|++++..| .+..... .++|++|...
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~--------~i~~~~q~~~------------------- 71 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGD-NDEWDGI--------TPVYKPQYID------------------- 71 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCc-EEEECCE--------EEEEEcccCC-------------------
Confidence 34568999999999999999999999999999888 5543221 2677776532
Q ss_pred cccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHh
Q 015825 208 NLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQ 287 (399)
Q Consensus 208 ~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~ 287 (399)
.+. ..+++...+.+++.+|++.+||||++++|+.+++.+.+.+.++.++
T Consensus 72 ----LSg------------------------Gq~qrv~laral~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~--- 120 (177)
T cd03222 72 ----LSG------------------------GELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEE--- 120 (177)
T ss_pred ----CCH------------------------HHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHc---
Confidence 010 1112222334778889999999999999999999999988876432
Q ss_pred ccCCCcceEEEeCCCHHHHHHHHHHhhcccCCee
Q 015825 288 GKSSGIFDHILYNDKLEECYENLKKHLGLDGSIA 321 (399)
Q Consensus 288 ~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~ 321 (399)
...++++++|+++.+...+++++.+.++..
T Consensus 121 ----~~~tiiivsH~~~~~~~~~d~i~~l~~~~~ 150 (177)
T cd03222 121 ----GKKTALVVEHDLAVLDYLSDRIHVFEGEPG 150 (177)
T ss_pred ----CCCEEEEEECCHHHHHHhCCEEEEEcCCCc
Confidence 123889999999999888899888876533
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.8e-17 Score=170.28 Aligned_cols=189 Identities=15% Similarity=0.111 Sum_probs=133.2
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|+.++|+||||||||||+++|+|+++|..| .+.....+.. ...+..++|++|++.+|.. ++.+|+
T Consensus 336 ~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~-----ti~~Ni 409 (569)
T PRK10789 336 FTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEG-DIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD-----TVANNI 409 (569)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCC-EEEECCEEHhhCCHHHHHhheEEEccCCeeccc-----cHHHHH
Confidence 34569999999999999999999999999999999 5544322211 1123458999999877642 778888
Q ss_pred HHhccccCCcHHHHHHHHHc-CC-----------ceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-GK-----------RCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g~-----------~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+.... .+.+.+..+++. +. ...++-....+...++|+...+.+++.+|++++||||++++|+.++
T Consensus 410 ~~~~~~--~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD~~~~ 487 (569)
T PRK10789 410 ALGRPD--ATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTE 487 (569)
T ss_pred hcCCCC--CCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCCHHHH
Confidence 764321 233444433322 11 1111111111222345666777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
+.+.+.+..+.. ..|+++++|+++. ...+++++.+.+|.++..++.+++....
T Consensus 488 ~~i~~~l~~~~~---------~~tii~itH~~~~-~~~~d~i~~l~~G~i~~~g~~~~l~~~~ 540 (569)
T PRK10789 488 HQILHNLRQWGE---------GRTVIISAHRLSA-LTEASEILVMQHGHIAQRGNHDQLAQQS 540 (569)
T ss_pred HHHHHHHHHHhC---------CCEEEEEecchhH-HHcCCEEEEEeCCEEEEecCHHHHHHcC
Confidence 999999887431 2389999999865 4679999999999999988877776443
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.1e-16 Score=148.86 Aligned_cols=175 Identities=14% Similarity=0.165 Sum_probs=112.6
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--------ccccCCeeEEecChHHHHHHHhhhh
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--------AMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--------~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
+....+|++++|+||||||||||+++|+|+.++..| .+........ ...+.+++|+||++.+|+ . +
T Consensus 21 s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G-~i~~~g~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~-~----t 94 (218)
T cd03290 21 NIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEG-KVHWSNKNESEPSFEATRSRNRYSVAYAAQKPWLLN-A----T 94 (218)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCC-eEEECCcccccccccccchhhcceEEEEcCCCcccc-c----c
Confidence 344568999999999999999999999999999888 5554322111 112346899999976653 2 6
Q ss_pred hHHHHHHhccccCCcHHHHHHHHHc-CCceEE-----------ecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhC
Q 015825 199 FLEFASVHGNLYGTSVEAVEAVADA-GKRCIL-----------DIDVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~i~~~~~~-g~~~vl-----------dld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~l 266 (399)
+.+++.+... + ......+..+. +....+ +..+..+....++++..+.+++.+|++++||||++++
T Consensus 95 ~~~nl~~~~~-~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPt~~L 171 (218)
T cd03290 95 VEENITFGSP-F--NKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSAL 171 (218)
T ss_pred HHHHHhhcCc-C--CHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccc
Confidence 6777665321 1 11212222111 110000 0111122223455566677999999999999999999
Q ss_pred CCCcHHHHHH--HHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 267 GTETEDQILK--RLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 267 D~~~~e~i~~--~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
|+.+++.+.+ .++.+.+ ...++++++|+.+.+ ..+++++.+.+|
T Consensus 172 D~~~~~~l~~~~ll~~~~~--------~~~tii~~sH~~~~~-~~~d~i~~l~~G 217 (218)
T cd03290 172 DIHLSDHLMQEGILKFLQD--------DKRTLVLVTHKLQYL-PHADWIIAMKDG 217 (218)
T ss_pred CHHHHHHHHHHHHHHHHhc--------CCCEEEEEeCChHHH-hhCCEEEEecCC
Confidence 9998888877 3443321 124889999999876 468887776654
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.7e-16 Score=143.68 Aligned_cols=195 Identities=15% Similarity=0.156 Sum_probs=131.2
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeee---cCCCccccccCCeeEEecChHH--HHHHHhhhhhHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSH---TTRAPRAMEKDGVHYHFTERSV--MEKAIKDGKFLEF 202 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~---ttr~~~~~~~~~i~yvfq~~~l--f~~~~~~~~~~E~ 202 (399)
.+..+|+++.++|.||||||||+|.|+|.+.+..|+.... .|+.+......-++-|||++.. ++.+ ++.||
T Consensus 27 L~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l----TieEN 102 (263)
T COG1101 27 LEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL----TIEEN 102 (263)
T ss_pred eeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc----cHHHH
Confidence 3456899999999999999999999999999999943321 3444333322335667999753 5666 77888
Q ss_pred HHHhc---cccCCcH-------HHHHHHHHc---CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 203 ASVHG---NLYGTSV-------EAVEAVADA---GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 203 ~~~~~---~~~g~~~-------~~i~~~~~~---g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
..... ..+|... +..+..++. |+.-.++-...-+...++|....+.+.+.+|++++|||.++++||.
T Consensus 103 l~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLLDEHTAALDPk 182 (263)
T COG1101 103 LALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPK 182 (263)
T ss_pred HHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEecchhhcCCcc
Confidence 76542 2233222 111111111 1111111111111112445555666888999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+.+.+.+.-.+.-++ ...|.++|||+++.|+..-.|.|.+..|.++..-.-++-..+
T Consensus 183 ta~~vm~lT~kiV~~-------~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv~g~~k~~L 239 (263)
T COG1101 183 TAEFVMELTAKIVEE-------HKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDVTGEEKASL 239 (263)
T ss_pred hHHHHHHHHHHHHHh-------cCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEcccccccCC
Confidence 999988888776554 345999999999999999999999999999876554444443
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.3e-16 Score=167.72 Aligned_cols=186 Identities=16% Similarity=0.157 Sum_probs=129.3
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|+.++++||||||||||+++|+|+++|..| .+.....+. ....++.++|++|++.+|+. ++.+|+
T Consensus 339 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G-~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~-----ti~~Ni 412 (544)
T TIGR01842 339 FRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSG-SVRLDGADLKQWDRETFGKHIGYLPQDVELFPG-----TVAENI 412 (544)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEehhhCCHHHHhhheEEecCCcccccc-----cHHHHH
Confidence 44569999999999999999999999999999988 554322111 11223468999999877642 677887
Q ss_pred HHhccccCCcHHHHHHHHHc------------CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA------------GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~------------g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+... ..+.+++.+.++. +....++-....+...++|+...+.+++.+|++++||||++++|+.++
T Consensus 413 ~~~~~--~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~~~~ililDEpts~LD~~~~ 490 (544)
T TIGR01842 413 ARFGE--NADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEEGE 490 (544)
T ss_pred hccCC--CCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccccCHHHH
Confidence 65432 1233333332221 111111111111223355666777799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccc
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKG 330 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~ 330 (399)
+.+.+.+.++.. ...++++++|+++. ...+++++.+.+|.++..++++++
T Consensus 491 ~~i~~~l~~~~~--------~~~tvi~ith~~~~-~~~~d~i~~l~~G~i~~~g~~~~l 540 (544)
T TIGR01842 491 QALANAIKALKA--------RGITVVVITHRPSL-LGCVDKILVLQDGRIARFGERDEV 540 (544)
T ss_pred HHHHHHHHHHhh--------CCCEEEEEeCCHHH-HHhCCEEEEEECCEEEeeCCHHHH
Confidence 999998887531 12388999999974 567999999999999888775544
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.9e-16 Score=166.07 Aligned_cols=187 Identities=12% Similarity=-0.008 Sum_probs=121.5
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhH
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFL 200 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~ 200 (399)
.+....++...+|++++|+||||||||||+++|+|++++..| .+....+ ..++|+||++.+++.+ ++.
T Consensus 15 ~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G-~i~~~~~-------~~i~~~~q~~~~~~~~----tv~ 82 (530)
T PRK15064 15 PLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAG-NVSLDPN-------ERLGKLRQDQFAFEEF----TVL 82 (530)
T ss_pred EeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEecCC-------CEEEEEeccCCcCCCC----cHH
Confidence 344444455679999999999999999999999999999888 5543221 2378999986554332 333
Q ss_pred HHHHHhc-----------------------------------cccCCc-HHHHHHHHHc-CCce-EEecchhhHHHHHcC
Q 015825 201 EFASVHG-----------------------------------NLYGTS-VEAVEAVADA-GKRC-ILDIDVQGARSVRAS 242 (399)
Q Consensus 201 E~~~~~~-----------------------------------~~~g~~-~~~i~~~~~~-g~~~-vldld~~g~~~l~~~ 242 (399)
+++.+.. ..++.. ...+.+.++. +... ..+..+..+....++
T Consensus 83 e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGq~q 162 (530)
T PRK15064 83 DTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKL 162 (530)
T ss_pred HHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhCCCChhHhcCchhhcCHHHHH
Confidence 3332210 000100 1112222221 1100 000011122223456
Q ss_pred CcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeee
Q 015825 243 PLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIAT 322 (399)
Q Consensus 243 ~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~ 322 (399)
++..+.+++.+|++++||||++++|+.+.+.+.+.|.+ . ..++|+++||++.+...+++++.+.+|.++
T Consensus 163 rv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~----~-------~~tiiivsHd~~~~~~~~d~i~~l~~g~i~ 231 (530)
T PRK15064 163 RVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE----R-------NSTMIIISHDRHFLNSVCTHMADLDYGELR 231 (530)
T ss_pred HHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh----C-------CCeEEEEeCCHHHHHhhcceEEEEeCCEEE
Confidence 66777799999999999999999999999888888753 1 238899999999999999999999999884
Q ss_pred -ecCCCccc
Q 015825 323 -NHQTSPKG 330 (399)
Q Consensus 323 -~~~~~~~~ 330 (399)
..+.+.+.
T Consensus 232 ~~~g~~~~~ 240 (530)
T PRK15064 232 VYPGNYDEY 240 (530)
T ss_pred EecCCHHHH
Confidence 45554433
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-16 Score=166.58 Aligned_cols=185 Identities=14% Similarity=0.026 Sum_probs=122.9
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhH
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFL 200 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~ 200 (399)
.+..+.+....+|++++|+||||||||||+++|+|+.+|..| .+.... ...++|+||++.+++.+ ++.
T Consensus 19 ~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G-~i~~~~-------~~~i~~v~Q~~~~~~~~----tv~ 86 (552)
T TIGR03719 19 EILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNG-EARPAP-------GIKVGYLPQEPQLDPTK----TVR 86 (552)
T ss_pred eeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEecC-------CCEEEEEeccCCCCCCC----cHH
Confidence 344444556679999999999999999999999999999888 554321 12489999987665544 555
Q ss_pred HHHHHhccc--------------cCCcHH----------HH----------------HHHHHcCCceEEecchhhHHHHH
Q 015825 201 EFASVHGNL--------------YGTSVE----------AV----------------EAVADAGKRCILDIDVQGARSVR 240 (399)
Q Consensus 201 E~~~~~~~~--------------~g~~~~----------~i----------------~~~~~~g~~~vldld~~g~~~l~ 240 (399)
+++.+.... +..... .+ .+.+........+..+..+....
T Consensus 87 e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~LSgGq 166 (552)
T TIGR03719 87 ENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGE 166 (552)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCCCcccCchhhcCHHH
Confidence 555432100 011000 01 11111100000111122222334
Q ss_pred cCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCe
Q 015825 241 ASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSI 320 (399)
Q Consensus 241 ~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~ 320 (399)
++++..+.+++.+|++++||||++++|+.+.+.+.+.|.++. .++|+++|+++.+...+++++.+.+|.
T Consensus 167 kqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~-----------~tvIiisHd~~~~~~~~d~v~~l~~g~ 235 (552)
T TIGR03719 167 RRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP-----------GTVVAVTHDRYFLDNVAGWILELDRGR 235 (552)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC-----------CeEEEEeCCHHHHHhhcCeEEEEECCE
Confidence 556667779999999999999999999999988888776521 288999999999999899999999988
Q ss_pred ee-ecCCCc
Q 015825 321 AT-NHQTSP 328 (399)
Q Consensus 321 ~~-~~~~~~ 328 (399)
++ ..+...
T Consensus 236 i~~~~g~~~ 244 (552)
T TIGR03719 236 GIPWEGNYS 244 (552)
T ss_pred EEEecCCHH
Confidence 65 445444
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.2e-16 Score=149.90 Aligned_cols=202 Identities=16% Similarity=0.129 Sum_probs=142.3
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-----cccceeeecC--------CCccccccCCeeEEecChH--HHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-----MFGFSVSHTT--------RAPRAMEKDGVHYHFTERS--VMEK 192 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-----~~g~~i~~tt--------r~~~~~~~~~i~yvfq~~~--lf~~ 192 (399)
+...+|++++++|.||||||-+.+.++++++. -.| .+.+.. +..+...-+.++++||++- +-|-
T Consensus 31 f~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg-~i~f~G~dll~~se~~lr~iRG~~I~MIFQEPMtSLNPl 109 (534)
T COG4172 31 FDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSG-SILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPL 109 (534)
T ss_pred eeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccc-eeEEcChhhhcCCHHHHhhhcccceEEEecccccccCcH
Confidence 44569999999999999999999999999875 122 222211 1112222346899999863 2222
Q ss_pred HHhhhhhHHHHHHhccccCCcHHHHHHHHHcCCce--------EEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHH
Q 015825 193 AIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRC--------ILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (399)
Q Consensus 193 ~~~~~~~~E~~~~~~~~~g~~~~~i~~~~~~g~~~--------vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~ 264 (399)
.....++.|.+.++ ++....+.++.+-+.+.. .++-.|..+...++|+...+.+++++|++++.|||+.
T Consensus 110 ~tIg~Qi~E~l~~H---rg~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTT 186 (534)
T COG4172 110 HTIGKQLAEVLRLH---RGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIADEPTT 186 (534)
T ss_pred hHHHHHHHHHHHHH---hcccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccCcchhhHHHHHHHHcCCCCeEeecCCcc
Confidence 21222555655554 444555444433221111 1111122222234666677789999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 265 ARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 265 ~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
++|..-+.+|.+.|+.++++++. .++++|||+.-+-+.++++++|.+|.++..++.+.++..|......
T Consensus 187 ALDVtvQaQIL~Ll~~Lq~~~gM-------a~lfITHDL~iVr~~ADrV~VM~~G~ivE~~~t~~lF~~PqHpYTr 255 (534)
T COG4172 187 ALDVTVQAQILDLLKELQAELGM-------AILFITHDLGIVRKFADRVYVMQHGEIVETGTTETLFAAPQHPYTR 255 (534)
T ss_pred hhhhhhHHHHHHHHHHHHHHhCc-------EEEEEeccHHHHHHhhhhEEEEeccEEeecCcHHHHhhCCCChHHH
Confidence 99999999999999999988766 7899999999999999999999999999999999999888766544
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=9.4e-17 Score=170.15 Aligned_cols=188 Identities=16% Similarity=0.166 Sum_probs=132.4
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|+.++|+||||||||||+++|+|.++|..| .+.....+.. ...++.++|++|++.+|. +++.||+
T Consensus 356 ~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~-----~ti~~Ni 429 (585)
T TIGR01192 356 FEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVG-QILIDGIDINTVTRESLRKSIATVFQDAGLFN-----RSIRENI 429 (585)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCC-EEEECCEEhhhCCHHHHHhheEEEccCCccCc-----ccHHHHH
Confidence 34468999999999999999999999999999888 5554322211 122345899999987664 3788888
Q ss_pred HHhccccCCcHHHHHHHHHc-CC-----------ceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-GK-----------RCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g~-----------~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+.... .+.+++.++++. +. ...++-....+...++|+...+.+++.+|++++||||++++|+.++
T Consensus 430 ~~~~~~--~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq~qrl~lARall~~p~ililDEpts~LD~~~~ 507 (585)
T TIGR01192 430 RLGREG--ATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVETE 507 (585)
T ss_pred hcCCCC--CCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHH
Confidence 775321 233444333221 11 1111101111222345666777799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+.+.+.+.++.. ..++++++|+++.. ..+++++.+.+|.++..++..++...
T Consensus 508 ~~i~~~l~~~~~---------~~tvI~isH~~~~~-~~~d~i~~l~~G~i~~~g~~~~l~~~ 559 (585)
T TIGR01192 508 ARVKNAIDALRK---------NRTTFIIAHRLSTV-RNADLVLFLDQGRLIEKGSFQELIQK 559 (585)
T ss_pred HHHHHHHHHHhC---------CCEEEEEEcChHHH-HcCCEEEEEECCEEEEECCHHHHHHC
Confidence 999999876431 23889999999776 56999999999999888877666543
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.4e-16 Score=168.42 Aligned_cols=186 Identities=17% Similarity=0.143 Sum_probs=131.3
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|+.++++||||||||||++.|+|+++|..| .+.....+. ....++.++|++|++.+|.. ++.+|+
T Consensus 361 l~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G-~I~i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~-----Ti~~Ni 434 (576)
T TIGR02204 361 LTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSG-RILLDGVDLRQLDPAELRARMALVPQDPVLFAA-----SVMENI 434 (576)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCC-EEEECCEEHHhcCHHHHHHhceEEccCCccccc-----cHHHHH
Confidence 44569999999999999999999999999999888 554432221 11123458999999877643 788888
Q ss_pred HHhccccCCcHHHHHHHHHc------------CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA------------GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~------------g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+.... .+.+++.+.++. |....+.-........++|+...+.+++.+|+++++|||++++|+.++
T Consensus 435 ~~~~~~--~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~ 512 (576)
T TIGR02204 435 RYGRPD--ATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESE 512 (576)
T ss_pred hcCCCC--CCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHH
Confidence 764321 123444333332 111111111111223356667777799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
+.+.+.+..+.+ ..++|+++|+++. ...+++++.+.+|.++..+++.++.
T Consensus 513 ~~i~~~l~~~~~---------~~t~IiitH~~~~-~~~~d~vi~l~~g~~~~~g~~~~l~ 562 (576)
T TIGR02204 513 QLVQQALETLMK---------GRTTLIIAHRLAT-VLKADRIVVMDQGRIVAQGTHAELI 562 (576)
T ss_pred HHHHHHHHHHhC---------CCEEEEEecchHH-HHhCCEEEEEECCEEEeeecHHHHH
Confidence 999998887531 2389999999855 5679999999999999888766554
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=99.60 E-value=1e-16 Score=169.32 Aligned_cols=188 Identities=13% Similarity=0.111 Sum_probs=134.2
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|+.++|+|+||||||||++.|+|+++|..| .+.....+.. ...++.++|++|++.+|.. ++.+|+
T Consensus 353 l~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G-~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~-----Ti~~Ni 426 (571)
T TIGR02203 353 LVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSG-QILLDGHDLADYTLASLRRQVALVSQDVVLFND-----TIANNI 426 (571)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCC-eEEECCEeHHhcCHHHHHhhceEEccCcccccc-----cHHHHH
Confidence 34468999999999999999999999999999888 6654332211 1223458999999877753 788888
Q ss_pred HHhccccCCcHHHHHHHHHc------------CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA------------GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~------------g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+... ...+.+++.++++. |....+.-.-..+...++|+...+.+++.+|++++||||++++|..++
T Consensus 427 ~~~~~-~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQRiaLARall~~~~illLDEpts~LD~~~~ 505 (571)
T TIGR02203 427 AYGRT-EQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALDNESE 505 (571)
T ss_pred hcCCC-CCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 76531 02334444443332 111111111111233456777777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+.+.+.|.+... ..++|+++|+.. ....+|+++.+.+|++...++..+++.
T Consensus 506 ~~i~~~L~~~~~---------~~tiIiitH~~~-~~~~~D~ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 506 RLVQAALERLMQ---------GRTTLVIAHRLS-TIEKADRIVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred HHHHHHHHHHhC---------CCEEEEEehhhH-HHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 999988886431 248999999984 467799999999999988888777653
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.6e-16 Score=160.46 Aligned_cols=186 Identities=18% Similarity=0.176 Sum_probs=132.5
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
++..+|+-++|+|+|||||||++|+|.+.+. ..| .|....... ....++-+||+||+..+|.. ++++|+
T Consensus 373 f~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG-~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFnd-----TIl~NI 445 (591)
T KOG0057|consen 373 FTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSG-SILIDGQDIKEVSLESLRQSIGVVPQDSVLFND-----TILYNI 445 (591)
T ss_pred EEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCC-cEEECCeeHhhhChHHhhhheeEeCCcccccch-----hHHHHh
Confidence 4456999999999999999999999999988 677 554332221 11223458999999988865 788888
Q ss_pred HHhccccCCcHHHHHHHHH-cCCceEEecchhhHHH-----------HHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVAD-AGKRCILDIDVQGARS-----------VRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~-~g~~~vldld~~g~~~-----------l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.|+. .+- +.+++.++.+ .+....+.--|.|... ..+|+...+.+++.+|++.++||+|+++|.+++
T Consensus 446 ~YGn-~sa-s~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE 523 (591)
T KOG0057|consen 446 KYGN-PSA-SDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETE 523 (591)
T ss_pred hcCC-CCc-CHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhH
Confidence 7753 222 3333433333 2332211111222211 135666777799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
.++.+.+.... +.-|.|++-|+++.+ ..+|+++.+++|++...|+..+++.
T Consensus 524 ~~i~~~i~~~~---------~~rTvI~IvH~l~ll-~~~DkI~~l~nG~v~e~gth~ell~ 574 (591)
T KOG0057|consen 524 REILDMIMDVM---------SGRTVIMIVHRLDLL-KDFDKIIVLDNGTVKEYGTHSELLA 574 (591)
T ss_pred HHHHHHHHHhc---------CCCeEEEEEecchhH-hcCCEEEEEECCeeEEeccHHHHhh
Confidence 99988887721 122889999998655 5799999999999999999888877
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.4e-16 Score=136.64 Aligned_cols=177 Identities=14% Similarity=0.161 Sum_probs=115.7
Q ss_pred eEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccc--eeeecC-C-CccccccCCeeEEecChHHHHHHHh
Q 015825 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGF--SVSHTT-R-APRAMEKDGVHYHFTERSVMEKAIK 195 (399)
Q Consensus 120 ~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~--~i~~tt-r-~~~~~~~~~i~yvfq~~~lf~~~~~ 195 (399)
..+....+...-+|+++.++||||||||||+..+.|.+.+.+.. .+.... + ..-+..++.+|+.||+.-+|+++
T Consensus 15 ~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~qRq~GiLFQD~lLFphl-- 92 (213)
T COG4136 15 SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAAQRQIGILFQDALLFPHL-- 92 (213)
T ss_pred ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchhhhheeeeeccccccccc--
Confidence 34444444455699999999999999999999999998774421 333211 1 11122234589999999999998
Q ss_pred hhhhHHHHHHh--ccccCCcH-HHHHHHHH-cCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 196 DGKFLEFASVH--GNLYGTSV-EAVEAVAD-AGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 196 ~~~~~E~~~~~--~~~~g~~~-~~i~~~~~-~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
++.+|+.|. ....|..+ ..+..+++ .++.-.++-+|......++.+.....+++..|..++||||++.+|..-+
T Consensus 93 --sVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~gL~g~f~~dP~tlSGGQrARvaL~R~Lla~Pk~lLLDEPFS~LD~ALR 170 (213)
T COG4136 93 --SVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDVALR 170 (213)
T ss_pred --ccccceEEecCcccccHHHHhhHHHHHHHhccchhhhcChhhcCcchHHHHHHHHHHHhCcceeeeCCchhHHHHHHH
Confidence 777776553 22333221 11122222 2455556667766665566666677789999999999999999997777
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHH
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECY 307 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~ 307 (399)
.++++++=.-... .....|.||||.+.+-
T Consensus 171 ~qfR~wVFs~~r~-------agiPtv~VTHD~~Dvp 199 (213)
T COG4136 171 DQFRQWVFSEVRA-------AGIPTVQVTHDLQDVP 199 (213)
T ss_pred HHHHHHHHHHHHh-------cCCCeEEEecccccCC
Confidence 7776665432211 2347889999876553
|
|
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.5e-16 Score=138.96 Aligned_cols=199 Identities=15% Similarity=0.116 Sum_probs=139.7
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeec----CCCc-cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHT----TRAP-RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~t----tr~~-~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
...+|+.-+++||||+||||++..|.|.-+|..|....+. ++.+ ....+.|+|--||.+..|+.+ ++.||+
T Consensus 27 ~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GIGRKFQ~PtVfe~l----tV~eNL 102 (249)
T COG4674 27 SVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGIGRKFQKPTVFENL----TVRENL 102 (249)
T ss_pred EecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhccCccccCCeehhhc----cHHHHH
Confidence 3468999999999999999999999999999988444432 1211 222345788999999999988 888888
Q ss_pred HHhccc------------cCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 204 SVHGNL------------YGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 204 ~~~~~~------------~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
+...+. .......+.+.+.- ++...-+.....+...++|.+..-..++.+|.++++|||.++.-...
T Consensus 103 elA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~~~~~A~~LSHGqKQwLEIGMll~Q~P~lLLlDEPvAGMTd~E 182 (249)
T COG4674 103 ELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAE 182 (249)
T ss_pred HHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchhhhhhhhhhccchhhhhhhheeeccCCcEEEecCccCCCcHHH
Confidence 765332 11112223222211 11100001011112224667777789999999999999999997666
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
.+..-+.++.+.. .+.++++.||+.-+-..++++-++..|.+-..|+..++.+.|.+-+++
T Consensus 183 t~~taeLl~~la~---------~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~~dp~ViEvY 243 (249)
T COG4674 183 TEKTAELLKSLAG---------KHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDPKVIEVY 243 (249)
T ss_pred HHHHHHHHHHHhc---------CceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhhcCcceEeee
Confidence 6667677776542 457889999999999999999999999999999988888877655443
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=6e-16 Score=160.69 Aligned_cols=189 Identities=14% Similarity=0.079 Sum_probs=121.0
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC-cccceeeecCCCc-----cccccCCeeEEecChHHHHHHHhhhhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS-MFGFSVSHTTRAP-----RAMEKDGVHYHFTERSVMEKAIKDGKF 199 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~lf~~~~~~~~~ 199 (399)
.+....+|++++|+||||||||||+++|+|..++ ..| .+....+.. .......++|++|++.++..... ++
T Consensus 279 vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~~--~~ 355 (490)
T PRK10938 279 LSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSN-DLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVST--SV 355 (490)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCC-eEEEecccCCCCCCHHHHHhhceEECHHHHhhcccCC--cH
Confidence 3344569999999999999999999999998765 467 554422211 11123458999997654332100 23
Q ss_pred HHHHHHh--c--cccC-CcH---HHHHHHHHc-CCce-EEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 200 LEFASVH--G--NLYG-TSV---EAVEAVADA-GKRC-ILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 200 ~E~~~~~--~--~~~g-~~~---~~i~~~~~~-g~~~-vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
.++..+. . ..+. ... ..+.+.++. +... ..+-.+..+....++++..+.+++.+|++++||||++++|+.
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p~lllLDEPt~gLD~~ 435 (490)
T PRK10938 356 RNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPL 435 (490)
T ss_pred HHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHH
Confidence 3332211 1 1111 111 223333332 1211 222222333334566777778999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHH-HHHHhhcccCCeeeec
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYE-NLKKHLGLDGSIATNH 324 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~-~l~~ii~~~~~~~~~~ 324 (399)
+.+.+.+.|.++.++ +..++++++||++++.. .+++++.+.+|.++..
T Consensus 436 ~~~~l~~~L~~l~~~-------~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 436 NRQLVRRFVDVLISE-------GETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHHHHhc-------CCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 999999999987542 12368899999999987 4788888888876643
|
|
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.9e-16 Score=168.68 Aligned_cols=196 Identities=15% Similarity=0.109 Sum_probs=136.6
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCc---ccceeeecCCCcc-ccccCCeeEEecChHHHHHHHhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM---FGFSVSHTTRAPR-AMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~---~g~~i~~ttr~~~-~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
+..+.+....+|+.++|+||||||||||+++|+|..++. .| .+.....+.. ....+.++|++|+..+++.+
T Consensus 40 iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G-~i~~~g~~~~~~~~~~~i~yv~Q~~~~~~~l---- 114 (617)
T TIGR00955 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSG-SVLLNGMPIDAKEMRAISAYVQQDDLFIPTL---- 114 (617)
T ss_pred cccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCccee-EEEECCEECCHHHHhhhceeeccccccCccC----
Confidence 333344556799999999999999999999999988663 45 5554332221 11223579999998777766
Q ss_pred hhHHHHHHhccccC---CcHHH----HHHHHHc-CCceEEecch------hhHHHHHcCCcceeEEEEcCCChHHHHHHH
Q 015825 198 KFLEFASVHGNLYG---TSVEA----VEAVADA-GKRCILDIDV------QGARSVRASPLDAIFIFICPPSMEELEERL 263 (399)
Q Consensus 198 ~~~E~~~~~~~~~g---~~~~~----i~~~~~~-g~~~vldld~------~g~~~l~~~~~~~~~ili~~P~lllLDEpl 263 (399)
++.|++.|...++. ...+. +.+.++. ++....+-.. .++...++++...+.+++.+|++++||||+
T Consensus 115 TV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~vlllDEPt 194 (617)
T TIGR00955 115 TVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPT 194 (617)
T ss_pred cHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCEEEeeCCC
Confidence 88898887655431 12222 2222222 1111111100 123333456667777999999999999999
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCH-HHHHHHHHHhhcccCCeeeecCCCccc
Q 015825 264 RARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKL-EECYENLKKHLGLDGSIATNHQTSPKG 330 (399)
Q Consensus 264 ~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdl-eea~~~l~~ii~~~~~~~~~~~~~~~~ 330 (399)
+++|..+...+.+.++++..+ ..++|+++|++ .++++.+++++.+.+|+++..|++.+.
T Consensus 195 sgLD~~~~~~l~~~L~~l~~~--------g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~ 254 (617)
T TIGR00955 195 SGLDSFMAYSVVQVLKGLAQK--------GKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQA 254 (617)
T ss_pred cchhHHHHHHHHHHHHHHHhC--------CCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHH
Confidence 999999999999999886531 23888999988 478899999999999999988887655
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.5e-16 Score=141.33 Aligned_cols=199 Identities=14% Similarity=0.011 Sum_probs=124.8
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc---ccc-cCCeeEEecChHH-HHHHHhhhhhHHHH
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR---AME-KDGVHYHFTERSV-MEKAIKDGKFLEFA 203 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~---~~~-~~~i~yvfq~~~l-f~~~~~~~~~~E~~ 203 (399)
...+|++.+|+||||+|||||++.|+|.+.|..| .+....+... ..+ .+..+.++|+..+ |+. ++.|.+
T Consensus 23 ~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G-~v~~~g~~l~~~~~~~lA~~raVlpQ~s~laFpF-----tv~eVV 96 (259)
T COG4559 23 DLRPGEVLAILGPNGAGKSTLLKALSGELSPDSG-EVTLNGVPLNSWPPEELARHRAVLPQNSSLAFPF-----TVQEVV 96 (259)
T ss_pred eccCCcEEEEECCCCccHHHHHHHhhCccCCCCC-eEeeCCcChhhCCHHHHHHHhhhcccCcccccce-----EHHHHH
Confidence 3458999999999999999999999999999888 5543322211 111 1235677887654 442 455555
Q ss_pred HHhccccC--Cc-HH-H--HHHHHHcC-CceEEecchhhHHHHHcCCcceeE------EEEcCCChHHHHHHHHhCCCCc
Q 015825 204 SVHGNLYG--TS-VE-A--VEAVADAG-KRCILDIDVQGARSVRASPLDAIF------IFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 204 ~~~~~~~g--~~-~~-~--i~~~~~~g-~~~vldld~~g~~~l~~~~~~~~~------ili~~P~lllLDEpl~~lD~~~ 270 (399)
.+...-++ .. .+ . .++++..- ..-+-.-+...+....+|+++... .-.-.+..++||||++++|...
T Consensus 97 ~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~la~R~y~~LSGGEqQRVqlARvLaQl~~~v~~~r~L~LDEPtsaLDi~H 176 (259)
T COG4559 97 QMGRIPHRSGREPEEDERIAAQALAATDLSGLAGRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAH 176 (259)
T ss_pred HhcccccccCCCchhhHHHHHHHHHHcChhhhhccchhhcCchHHHHHHHHHHHHHccCCCCCCceEEecCCccccchHH
Confidence 55433332 11 11 1 22222221 100000011001111122222222 2222334778999999999988
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhc
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSK 341 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~ 341 (399)
+....+..+.+..+ .+.++.+-||++-|...+|+++.+.+|+++..++|.+.++......|+.
T Consensus 177 Q~~tl~laR~la~~--------g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p~~vlt~Etl~~vyg 239 (259)
T COG4559 177 QHHTLRLARQLARE--------GGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTDETLERVYG 239 (259)
T ss_pred HHHHHHHHHHHHhc--------CCcEEEEEccchHHHHhhheeeeeeCCeEeecCCHHHhcCHHHHHHHhC
Confidence 88887777776543 3578899999999999999999999999999999998887765555553
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=99.59 E-value=3e-16 Score=165.29 Aligned_cols=172 Identities=14% Similarity=0.020 Sum_probs=119.7
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChH-HHHHHHhhhhhHHHHHHh
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERS-VMEKAIKDGKFLEFASVH 206 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~-lf~~~~~~~~~~E~~~~~ 206 (399)
....+|++++|+||||||||||+++|+|+.+|..| .+.... . ..++|+||++. +++.+ ++.+++.+.
T Consensus 343 l~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G-~i~~~~-~------~~i~~v~q~~~~~~~~~----tv~e~l~~~ 410 (552)
T TIGR03719 343 FKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSG-TIKIGE-T------VKLAYVDQSRDALDPNK----TVWEEISGG 410 (552)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCe-EEEECC-c------eEEEEEeCCccccCCCC----cHHHHHHhh
Confidence 34569999999999999999999999999999888 554421 1 13899999853 44443 677777654
Q ss_pred ccccCCc--HHHHHHHHHc-CCce-EEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 015825 207 GNLYGTS--VEAVEAVADA-GKRC-ILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAK 282 (399)
Q Consensus 207 ~~~~g~~--~~~i~~~~~~-g~~~-vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~ 282 (399)
...++.. .......+.. +... ..+..+..+....++++..+.+++.+|++++||||++++|+.+.+.+.+.|.++.
T Consensus 411 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~ 490 (552)
T TIGR03719 411 LDIIQLGKREVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA 490 (552)
T ss_pred ccccccCcchHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC
Confidence 3222211 1222233332 1110 1122222333345666777779999999999999999999999999988888641
Q ss_pred HHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccC-Ceee
Q 015825 283 EEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDG-SIAT 322 (399)
Q Consensus 283 ~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~-~~~~ 322 (399)
. ++|+++||++.+...+++++.+.+ +.+.
T Consensus 491 ----------~-~viivsHd~~~~~~~~d~i~~l~~~~~~~ 520 (552)
T TIGR03719 491 ----------G-CAVVISHDRWFLDRIATHILAFEGDSHVE 520 (552)
T ss_pred ----------C-eEEEEeCCHHHHHHhCCEEEEEECCCeEE
Confidence 1 688999999999988999998875 4544
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.59 E-value=3.5e-16 Score=164.89 Aligned_cols=174 Identities=15% Similarity=0.017 Sum_probs=120.2
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecCh-HHHHHHHhhhhhHHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTER-SVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~-~lf~~~~~~~~~~E~~~ 204 (399)
.+....+|++++|+||||||||||+++|+|+.+|..| .+.... . ..++|+||+. .+++.+ ++.+++.
T Consensus 343 isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G-~i~~~~-~------~~i~~v~q~~~~~~~~~----tv~e~l~ 410 (556)
T PRK11819 343 LSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSG-TIKIGE-T------VKLAYVDQSRDALDPNK----TVWEEIS 410 (556)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECC-c------eEEEEEeCchhhcCCCC----CHHHHHH
Confidence 3344569999999999999999999999999999888 554421 1 1389999986 344443 6777776
Q ss_pred HhccccCCc--HHHHHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHH
Q 015825 205 VHGNLYGTS--VEAVEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRN 280 (399)
Q Consensus 205 ~~~~~~g~~--~~~i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~ 280 (399)
+....++.. .......++. +.. ...+-.+..+....++++..+.+++.+|++++||||++++|+.+++.+.+.|..
T Consensus 411 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~ 490 (556)
T PRK11819 411 GGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLE 490 (556)
T ss_pred hhcccccccccHHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHh
Confidence 543222211 1222223322 111 011112222333355666777799999999999999999999999999988876
Q ss_pred HHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccC-Ceee
Q 015825 281 AKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDG-SIAT 322 (399)
Q Consensus 281 ~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~-~~~~ 322 (399)
+. . ++|+++||++.+...+++++.+.+ |.+.
T Consensus 491 ~~----------~-tvi~vtHd~~~~~~~~d~i~~l~~~g~~~ 522 (556)
T PRK11819 491 FP----------G-CAVVISHDRWFLDRIATHILAFEGDSQVE 522 (556)
T ss_pred CC----------C-eEEEEECCHHHHHHhCCEEEEEECCCeEE
Confidence 31 1 688999999999999999888874 5544
|
|
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.6e-16 Score=137.14 Aligned_cols=124 Identities=18% Similarity=0.157 Sum_probs=94.2
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHh
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVH 206 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~ 206 (399)
+....+|++++|+||||||||||+++|+|+.++..| .+....+ ..++|+||
T Consensus 20 ~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G-~i~~~~~-------~~i~~~~~--------------------- 70 (144)
T cd03221 20 SLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEG-IVTWGST-------VKIGYFEQ--------------------- 70 (144)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCce-EEEECCe-------EEEEEEcc---------------------
Confidence 345569999999999999999999999999999888 5544321 23678877
Q ss_pred ccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 015825 207 GNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIK 286 (399)
Q Consensus 207 ~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~ 286 (399)
.+..+ +++...+.+++.+|++.++|||++++|+.++..+.+.++++
T Consensus 71 -----lS~G~------------------------~~rv~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~----- 116 (144)
T cd03221 71 -----LSGGE------------------------KMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEY----- 116 (144)
T ss_pred -----CCHHH------------------------HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHc-----
Confidence 01010 11122233678889999999999999999999888888763
Q ss_pred hccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 287 QGKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 287 ~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
..++++++|+++++...+++++.+.+|
T Consensus 117 ------~~til~~th~~~~~~~~~d~v~~l~~g 143 (144)
T cd03221 117 ------PGTVILVSHDRYFLDQVATKIIELEDG 143 (144)
T ss_pred ------CCEEEEEECCHHHHHHhCCEEEEEeCC
Confidence 127889999999998888888877665
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.58 E-value=3.3e-16 Score=157.96 Aligned_cols=187 Identities=18% Similarity=0.165 Sum_probs=131.6
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc-cc---cCCeeEEecChHHHHHHHhhhhhHHHHH
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA-ME---KDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~-~~---~~~i~yvfq~~~lf~~~~~~~~~~E~~~ 204 (399)
...+|+.++|+|+|||||||+++.|.|.+.+..| .+.....+... .+ +..++++.|...+|.. +..+|+.
T Consensus 360 ~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G-~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~-----Tlr~NL~ 433 (573)
T COG4987 360 TLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQG-SITLNGVEIASLDEQALRETISVLTQRVHLFSG-----TLRDNLR 433 (573)
T ss_pred eecCCCeEEEECCCCCCHHHHHHHHHhccCCCCC-eeeECCcChhhCChhhHHHHHhhhccchHHHHH-----HHHHHHh
Confidence 3469999999999999999999999999999988 66543322211 11 1236778888877754 6777776
Q ss_pred HhccccCCcHHHHHHHHHc-CCceEEecchhhHHH-----------HHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 205 VHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARS-----------VRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~-----------l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
.... ..+.+++.++++. ++..++.-.|+++.. ..+++...+.+++.+.++.+|||||.++|+.|++
T Consensus 434 lA~~--~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~ 511 (573)
T COG4987 434 LANP--DASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITER 511 (573)
T ss_pred hcCC--CCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHH
Confidence 6432 2345555555443 221111112222211 1234455566888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
++.+++.+..+ .-|.+++||.+-.+ +.+++++.+.+|+++.+|++.++...
T Consensus 512 ~vL~ll~~~~~---------~kTll~vTHrL~~l-e~~drIivl~~Gkiie~G~~~~Ll~~ 562 (573)
T COG4987 512 QVLALLFEHAE---------GKTLLMVTHRLRGL-ERMDRIIVLDNGKIIEEGTHAELLAN 562 (573)
T ss_pred HHHHHHHHHhc---------CCeEEEEecccccH-hhcCEEEEEECCeeeecCCHHhhhcc
Confidence 99999876332 12899999988654 57999999999999999998877753
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.1e-15 Score=168.48 Aligned_cols=189 Identities=15% Similarity=0.096 Sum_probs=145.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceee--ecCCC--ccccccCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS--HTTRA--PRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~--~ttr~--~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
..+|++++++|||||||||++++|.|..++..|.... |+-.. ........+||.||...+++.+ |..|.+.+
T Consensus 588 V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~iGyCPQ~d~l~~~l----T~rEhL~~ 663 (885)
T KOG0059|consen 588 VPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQLGYCPQFDALWEEL----TGREHLEF 663 (885)
T ss_pred ecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhcccCCchhhhhhhc----cHHHHHHH
Confidence 4689999999999999999999999999999995544 21111 1111234589999999999888 89999999
Q ss_pred hccccCCcHHHHHHHHHcCCceEEecchhhHHHH------HcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHH
Q 015825 206 HGNLYGTSVEAVEAVADAGKRCILDIDVQGARSV------RASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLR 279 (399)
Q Consensus 206 ~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l------~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~ 279 (399)
.+++.|.+..++.+.++..... +.+.+.+.+.. .+++...+.+++.+|++.+||||+.++||..+..++..+.
T Consensus 664 ~arlrG~~~~di~~~v~~ll~~-~~L~~~~~~~~~~ySgG~kRkLs~aialig~p~vi~LDEPstGmDP~arr~lW~ii~ 742 (885)
T KOG0059|consen 664 YARLRGLPRSDIGSAIEKLLRL-VGLGPYANKQVRTYSGGNKRRLSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIA 742 (885)
T ss_pred HHHHcCCChhHHHHHHHHHHHH-cCChhhhccchhhCCCcchhhHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHH
Confidence 9999998887777665442211 12222111111 2445666779999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 280 NAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 280 ~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
++++. +. .+|+.+|.++|+-..++|+..+.+|+....|++.++.
T Consensus 743 ~~~k~-------g~-aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LK 786 (885)
T KOG0059|consen 743 RLRKN-------GK-AIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELK 786 (885)
T ss_pred HHHhc-------CC-EEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHH
Confidence 87653 12 6789999999999999999999999999988876443
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=3.7e-16 Score=180.56 Aligned_cols=189 Identities=10% Similarity=0.042 Sum_probs=139.7
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|+.++|+|+||||||||+++|.+++++..| .|.....+. ....++.++|++|++.+|. +++.+|+
T Consensus 1257 l~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G-~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~-----gTIr~NL 1330 (1495)
T PLN03232 1257 FFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKG-RIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFS-----GTVRFNI 1330 (1495)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCc-eEEECCEEhhhCCHHHHHhhcEEECCCCeeeC-----ccHHHHc
Confidence 44569999999999999999999999999999999 665433221 1222456899999988774 3888988
Q ss_pred HHhccccCCcHHHHHHHHHc-CC-----------ceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-GK-----------RCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g~-----------~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+.. ..+.+++.++++. +. ...+.-.-..+...++|+...+.+++.+|++++|||+|+++|.+++
T Consensus 1331 ~~~~---~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te 1407 (1495)
T PLN03232 1331 DPFS---EHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTD 1407 (1495)
T ss_pred CCCC---CCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHH
Confidence 7643 2345555554442 11 1111110011223456777778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
+.+++.|++.. ..+|+++++|.++.. ..+|+++++++|+++..|++.+++..+.
T Consensus 1408 ~~Iq~~L~~~~---------~~~TvI~IAHRl~ti-~~~DrIlVL~~G~ivE~Gt~~eLl~~~~ 1461 (1495)
T PLN03232 1408 SLIQRTIREEF---------KSCTMLVIAHRLNTI-IDCDKILVLSSGQVLEYDSPQELLSRDT 1461 (1495)
T ss_pred HHHHHHHHHHc---------CCCEEEEEeCCHHHH-HhCCEEEEEECCEEEEECCHHHHHhCCC
Confidence 99999988632 246999999999554 5699999999999999999998887654
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.2e-16 Score=179.01 Aligned_cols=191 Identities=14% Similarity=0.118 Sum_probs=134.8
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCc---------------------------------------------
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM--------------------------------------------- 160 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~--------------------------------------------- 160 (399)
.+....+|+.++|+||||||||||+++|.+++.|.
T Consensus 1187 lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1266 (1466)
T PTZ00265 1187 LTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGS 1266 (1466)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccccccccccccccccccccccccc
Confidence 33455699999999999999999999999999873
Q ss_pred ---------ccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccCCcHHHHHHHHHc-CCc
Q 015825 161 ---------FGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADA-GKR 226 (399)
Q Consensus 161 ---------~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g~~~~~i~~~~~~-g~~ 226 (399)
.| .|.....+.+ ...+..++||+|++.+|.. ++.||+.|... ..+.+++.++++. +..
T Consensus 1267 ~~~~~~~~~~G-~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~g-----TIreNI~~g~~--~at~eeI~~A~k~A~l~ 1338 (1466)
T PTZ00265 1267 GEDSTVFKNSG-KILLDGVDICDYNLKDLRNLFSIVSQEPMLFNM-----SIYENIKFGKE--DATREDVKRACKFAAID 1338 (1466)
T ss_pred ccccccCCCCC-eEEECCEEHHhCCHHHHHhhccEeCCCCccccc-----cHHHHHhcCCC--CCCHHHHHHHHHHcCCH
Confidence 44 3332221111 1123458999999988753 89999988633 2345566555443 211
Q ss_pred eEEecchh-----------hHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcce
Q 015825 227 CILDIDVQ-----------GARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFD 295 (399)
Q Consensus 227 ~vldld~~-----------g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t 295 (399)
.++.--|+ .+...++|+...+.+|+.+|++++|||+|+++|.++++.+++.|..+... ...|
T Consensus 1339 ~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~-------~~~T 1411 (1466)
T PTZ00265 1339 EFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDK-------ADKT 1411 (1466)
T ss_pred HHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhcc-------CCCE
Confidence 11110011 12234677778888999999999999999999999999999999875310 1238
Q ss_pred EEEeCCCHHHHHHHHHHhhcccC----Ceee-ecCCCccccC
Q 015825 296 HILYNDKLEECYENLKKHLGLDG----SIAT-NHQTSPKGID 332 (399)
Q Consensus 296 ~Viv~hdleea~~~l~~ii~~~~----~~~~-~~~~~~~~~~ 332 (399)
+|+++|.+ .+++.+|+++++.+ |.++ ..|+..+++.
T Consensus 1412 vIiIaHRl-sti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~ 1452 (1466)
T PTZ00265 1412 IITIAHRI-ASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLS 1452 (1466)
T ss_pred EEEEechH-HHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHh
Confidence 99999999 45678999999998 7755 6788777765
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=6.2e-16 Score=169.19 Aligned_cols=186 Identities=19% Similarity=0.174 Sum_probs=140.9
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc----cccCCeeEEecChHHHHHHHhhhhhHHHHH
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA----MEKDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~----~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~ 204 (399)
...+|+.++|+|||||||||++.+|.+.+.|..| .+.......+. ..+..++.|-|+|.+|.. +..||+.
T Consensus 1012 ~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G-~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~-----TIrENI~ 1085 (1228)
T KOG0055|consen 1012 SIRAGQTVALVGPSGSGKSTVISLLERFYDPDAG-KVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNG-----TIRENIA 1085 (1228)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCC-eEEECCcccccCCHHHHHHhcceeccCchhhcc-----cHHHHHh
Confidence 3469999999999999999999999999999998 66543333221 223468999999998864 7889999
Q ss_pred HhccccCCcHHHHHHHHHcCC--ceEEecchhhHH-----------HHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 205 VHGNLYGTSVEAVEAVADAGK--RCILDIDVQGAR-----------SVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~~~~~g~--~~vldld~~g~~-----------~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
|+.. ..+.+++.++++..- ..+..+ |+|+. ..++|+...+.+++.+|++++|||.|++||.+++
T Consensus 1086 YG~~--~vs~~eIi~Aak~ANaH~FI~sL-P~GyDT~vGerG~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSE 1162 (1228)
T KOG0055|consen 1086 YGSE--EVSEEEIIEAAKLANAHNFISSL-PQGYDTRVGERGVQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESE 1162 (1228)
T ss_pred ccCC--CCCHHHHHHHHHHhhhHHHHhcC-cCcccCccCcccCcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhH
Confidence 8722 256666665544211 111111 22221 1356677778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
..+|+.|.++.. ..|.|++.|-+ .+.+.+|.|+++.+|.++.+|+..+++..
T Consensus 1163 rvVQeALd~a~~---------gRT~IvIAHRL-STIqnaD~I~Vi~~G~VvE~GtH~~L~~~ 1214 (1228)
T KOG0055|consen 1163 RVVQEALDRAME---------GRTTIVIAHRL-STIQNADVIAVLKNGKVVEQGTHDELLAK 1214 (1228)
T ss_pred HHHHHHHHHhhc---------CCcEEEEecch-hhhhcCCEEEEEECCEEEecccHHHHHhC
Confidence 999999998653 23889999988 45568999999999999999998888873
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.4e-16 Score=164.77 Aligned_cols=176 Identities=13% Similarity=0.067 Sum_probs=118.3
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChH-HHHHHHhhhhhHHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERS-VMEKAIKDGKFLEFAS 204 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~-lf~~~~~~~~~~E~~~ 204 (399)
.++...+|++++|+||||||||||+++|+|.++|..| .+.. ... -.++|++|+.. +++.+ ++.+++.
T Consensus 338 vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G-~i~~-~~~------~~i~y~~q~~~~l~~~~----tv~e~l~ 405 (635)
T PRK11147 338 FSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSG-RIHC-GTK------LEVAYFDQHRAELDPEK----TVMDNLA 405 (635)
T ss_pred cEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc-EEEE-CCC------cEEEEEeCcccccCCCC----CHHHHHH
Confidence 3344569999999999999999999999999999888 5543 111 13899999753 44443 6777765
Q ss_pred HhccccCCc--HHHHHHHHHcCCc--eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHH
Q 015825 205 VHGNLYGTS--VEAVEAVADAGKR--CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRN 280 (399)
Q Consensus 205 ~~~~~~g~~--~~~i~~~~~~g~~--~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~ 280 (399)
+....+... ...+...+..... ...+-.+..+....++++..+.+++.+|++++||||++++|+.+.+.+.+.++.
T Consensus 406 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~ 485 (635)
T PRK11147 406 EGKQEVMVNGRPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDS 485 (635)
T ss_pred hhcccccccchHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHh
Confidence 532111111 2223333322110 001111112222345666677799999999999999999999988888777765
Q ss_pred HHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc-CCeeeec
Q 015825 281 AKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD-GSIATNH 324 (399)
Q Consensus 281 ~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~-~~~~~~~ 324 (399)
+ ..++|+++||.+.+...+++++.+. +|.+...
T Consensus 486 ~-----------~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~ 519 (635)
T PRK11147 486 Y-----------QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRY 519 (635)
T ss_pred C-----------CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEc
Confidence 2 1288999999999988899999886 6766643
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.3e-15 Score=132.14 Aligned_cols=219 Identities=13% Similarity=0.104 Sum_probs=146.9
Q ss_pred HHHHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------------ccccC
Q 015825 112 EQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------------AMEKD 178 (399)
Q Consensus 112 ~l~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------------~~~~~ 178 (399)
.+.+.+|-..-....++...+|++++|+|.||||||||+++|.+.+.|..| .+.+..+.-. ...+.
T Consensus 11 ~lsk~Yg~~~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G-~v~Y~~r~~~~~dl~~msEaeRR~L~RT 89 (258)
T COG4107 11 GLSKLYGPGKGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAG-TVTYRMRDGQPRDLYTMSEAERRRLLRT 89 (258)
T ss_pred hhhhhhCCCcCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCC-eEEEEcCCCCchhHhhhchHHHHHHhhh
Confidence 344555544333333455679999999999999999999999999999999 5544322111 11112
Q ss_pred CeeEEecChHH-HHHHHhhh-hhHHH-HHHhccccCCcHHHHHHHHHcCCc--eEEecchhhHHHHHcCCcceeEEEEcC
Q 015825 179 GVHYHFTERSV-MEKAIKDG-KFLEF-ASVHGNLYGTSVEAVEAVADAGKR--CILDIDVQGARSVRASPLDAIFIFICP 253 (399)
Q Consensus 179 ~i~yvfq~~~l-f~~~~~~~-~~~E~-~~~~~~~~g~~~~~i~~~~~~g~~--~vldld~~g~~~l~~~~~~~~~ili~~ 253 (399)
.-|++.|++.. .......+ .+-|- .....+.||..+......+++-.. ..+|-.|..+....+|+.+.+.-+++.
T Consensus 90 eWG~VhQnP~DGLRm~VSAG~NiGERlma~G~RHYG~iR~~a~~WL~~VEI~~~RiDD~PrtFSGGMqQRLQiARnLVt~ 169 (258)
T COG4107 90 EWGFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTR 169 (258)
T ss_pred ccceeecCccccceeeeccCCccchhHHhhhhhhhhhHHHHHHHHHHhcccCcccccCcccccchHHHHHHHHHHHhccC
Confidence 34677776532 11111111 22222 233456687766666555544221 122223334444456677777889999
Q ss_pred CChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 254 P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
|.+..||||+.++|..-+..+...++.+-.++.. ..||+|||+.-|--..++.++|..|.++..+-...++..
T Consensus 170 PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~l-------a~viVTHDl~VarLla~rlmvmk~g~vve~GLTDrvLDD 242 (258)
T COG4107 170 PRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGL-------AVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLDD 242 (258)
T ss_pred CceEEecCCCCCcchhhHHHHHHHHHHHHHhcCc-------eEEEEechhHHHHHhhhcceeecCCCEeccccccccccC
Confidence 9999999999999988777888888877766543 789999999888888899999999999988888888877
Q ss_pred Ccchh
Q 015825 334 PADHS 338 (399)
Q Consensus 334 p~~~~ 338 (399)
|....
T Consensus 243 P~hPY 247 (258)
T COG4107 243 PHHPY 247 (258)
T ss_pred CCCch
Confidence 76544
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.2e-16 Score=151.41 Aligned_cols=177 Identities=16% Similarity=0.109 Sum_probs=118.2
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhc
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHG 207 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~ 207 (399)
....+|++++|+||||||||||+++|+|++++..| .+.... .++|++|++.+++ . ++.+++.+..
T Consensus 58 ~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G-~I~i~g---------~i~yv~q~~~l~~-~----tv~enl~~~~ 122 (282)
T cd03291 58 LKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEG-KIKHSG---------RISFSSQFSWIMP-G----TIKENIIFGV 122 (282)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECC---------EEEEEeCcccccc-c----CHHHHhhccc
Confidence 44568999999999999999999999999999888 554322 2789999875554 2 5666665432
Q ss_pred cccCCcHHHHHHHHHc-CCc-----------eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHH
Q 015825 208 NLYGTSVEAVEAVADA-GKR-----------CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQIL 275 (399)
Q Consensus 208 ~~~g~~~~~i~~~~~~-g~~-----------~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~ 275 (399)
. +. ...+...+.. +.. ..++-.+..+....+++...+.+++.+|++++||||++++|+.+++.+.
T Consensus 123 ~-~~--~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~ 199 (282)
T cd03291 123 S-YD--EYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIF 199 (282)
T ss_pred c-cC--HHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHH
Confidence 1 11 1111111111 100 0011001112223345566667889999999999999999998888777
Q ss_pred HHH-HHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 276 KRL-RNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 276 ~~L-~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+.+ ..+. . ..++++++|+++.+ ..+++++.+.+|.++..+++.++..
T Consensus 200 ~~ll~~~~----~-----~~tIiiisH~~~~~-~~~d~i~~l~~G~i~~~g~~~~~~~ 247 (282)
T cd03291 200 ESCVCKLM----A-----NKTRILVTSKMEHL-KKADKILILHEGSSYFYGTFSELQS 247 (282)
T ss_pred HHHHHHhh----C-----CCEEEEEeCChHHH-HhCCEEEEEECCEEEEECCHHHHHh
Confidence 654 3322 1 23888999999886 5799999999999887777666554
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.4e-16 Score=147.29 Aligned_cols=174 Identities=13% Similarity=0.100 Sum_probs=110.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceee-----------ecCCCcc----ccc--cCCeeEEecChHHHHH
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS-----------HTTRAPR----AME--KDGVHYHFTERSVMEK 192 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~-----------~ttr~~~----~~~--~~~i~yvfq~~~lf~~ 192 (399)
..+|++++|+||||||||||+++|+|++++..| .+. ....... ... ...++|+||....++.
T Consensus 23 i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G-~I~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 101 (255)
T cd03236 23 PREGQVLGLVGPNGIGKSTALKILAGKLKPNLG-KFDDPPDWDEILDEFRGSELQNYFTKLLEGDVKVIVKPQYVDLIPK 101 (255)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCc-eEeeccccchhhhhccCchhhhhhHHhhhcccceeeecchhccCch
Confidence 458999999999999999999999999999999 442 1111110 000 1135677777655542
Q ss_pred HHhhhhhHHHHHHhccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 193 AIKDGKFLEFASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 193 ~~~~~~~~E~~~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
...+++.++.. .......+.+.++. +....++..+..+....+++...+.+++.+|++.++|||++++|+.++
T Consensus 102 -~~~~~i~~~l~-----~~~~~~~~~~~l~~~gl~~~~~~~~~~LS~G~~qrv~laral~~~p~illlDEPts~LD~~~~ 175 (255)
T cd03236 102 -AVKGKVGELLK-----KKDERGKLDELVDQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQR 175 (255)
T ss_pred -HHHHHHHHHhc-----hhHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHH
Confidence 11122222211 01111222233322 111111222222223345566667788999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDG 318 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~ 318 (399)
..+.+.++++.++ ..++++++|+++.+...+++++.+.+
T Consensus 176 ~~l~~~l~~l~~~--------~~tIIiiSHd~~~~~~~ad~i~~l~~ 214 (255)
T cd03236 176 LNAARLIRELAED--------DNYVLVVEHDLAVLDYLSDYIHCLYG 214 (255)
T ss_pred HHHHHHHHHHHhc--------CCEEEEEECCHHHHHHhCCEEEEECC
Confidence 9999888876532 24889999999998888998877754
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=9.6e-16 Score=175.76 Aligned_cols=193 Identities=16% Similarity=0.108 Sum_probs=132.2
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC---CcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP---SMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~---~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
+..+.+....+|++++|+||||||||||+++|+|..+ +..| .+.....+.....++.++|++|+..+++.+ +
T Consensus 778 iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G-~I~i~G~~~~~~~~~~i~yv~Q~~~~~~~~----T 852 (1394)
T TIGR00956 778 ILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGG-DRLVNGRPLDSSFQRSIGYVQQQDLHLPTS----T 852 (1394)
T ss_pred eeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCccee-EEEECCEECChhhhcceeeecccccCCCCC----C
Confidence 3333444556999999999999999999999999986 4557 555433322112234589999986666555 8
Q ss_pred hHHHHHHhccccC---CcHHH----HHHHHHc-CCceEEecch----hhHHHHHcCCcceeEEEEcCCC-hHHHHHHHHh
Q 015825 199 FLEFASVHGNLYG---TSVEA----VEAVADA-GKRCILDIDV----QGARSVRASPLDAIFIFICPPS-MEELEERLRA 265 (399)
Q Consensus 199 ~~E~~~~~~~~~g---~~~~~----i~~~~~~-g~~~vldld~----~g~~~l~~~~~~~~~ili~~P~-lllLDEpl~~ 265 (399)
+.|++.+...++. .+..+ +.+.++. ++....+-.+ .++...+++++....+++.+|+ +++||||+++
T Consensus 853 v~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~aL~~~P~~iLlLDEPTsg 932 (1394)
T TIGR00956 853 VRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSG 932 (1394)
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHHHHHcCCCeEEEEcCCCCC
Confidence 8888887654331 22222 2233322 1111111111 1233445667777789999996 8999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHH-HHHHHHhhcccCC-eeeecCCC
Q 015825 266 RGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEEC-YENLKKHLGLDGS-IATNHQTS 327 (399)
Q Consensus 266 lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea-~~~l~~ii~~~~~-~~~~~~~~ 327 (399)
+|..+...+.+.|+++..+ ..++|+++|+++.. +..+|+++.+.+| +++..+++
T Consensus 933 LD~~~~~~i~~~L~~la~~--------g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~ 988 (1394)
T TIGR00956 933 LDSQTAWSICKLMRKLADH--------GQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDL 988 (1394)
T ss_pred CCHHHHHHHHHHHHHHHHc--------CCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCc
Confidence 9999999999999987532 34889999998864 5678999999886 88877664
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=1e-15 Score=163.55 Aligned_cols=180 Identities=11% Similarity=0.019 Sum_probs=118.3
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
.+....+|++++|+||||||||||+++|+|..+|..| .+..... ..++|++|+...+ +....++.++...
T Consensus 331 isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G-~i~~~~~-------~~igy~~Q~~~~~--l~~~~~~~~~~~~ 400 (638)
T PRK10636 331 IKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSG-EIGLAKG-------IKLGYFAQHQLEF--LRADESPLQHLAR 400 (638)
T ss_pred ceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-eEEECCC-------EEEEEecCcchhh--CCccchHHHHHHH
Confidence 3344569999999999999999999999999999889 5543211 1379999974211 1001133443221
Q ss_pred hccccCCcHHHHHHHHHcCCc--eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 015825 206 HGNLYGTSVEAVEAVADAGKR--CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKE 283 (399)
Q Consensus 206 ~~~~~g~~~~~i~~~~~~g~~--~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~ 283 (399)
.. .......+...+..... ...+-.+..+....++++..+.+++.+|++++||||++++|+.+.+.+.+.|..+
T Consensus 401 ~~--~~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-- 476 (638)
T PRK10636 401 LA--PQELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF-- 476 (638)
T ss_pred hC--chhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--
Confidence 10 01112233333322110 0111112222223456666777899999999999999999999999998888763
Q ss_pred HHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeee-ecCCCc
Q 015825 284 EIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIAT-NHQTSP 328 (399)
Q Consensus 284 ~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~-~~~~~~ 328 (399)
.. ++|+++||.+.+...+++++.+.+|.++ ..++..
T Consensus 477 --------~g-tvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~ 513 (638)
T PRK10636 477 --------EG-ALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLE 513 (638)
T ss_pred --------CC-eEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHH
Confidence 12 8899999999999999999999998876 445443
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=6.3e-16 Score=179.12 Aligned_cols=190 Identities=12% Similarity=0.044 Sum_probs=140.1
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
.+....+|+.++|+|+||||||||+++|.+++++..| .|.....+. ....++.++|++|++.+|. +++.+
T Consensus 1258 is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G-~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~-----GTIre 1331 (1622)
T PLN03130 1258 LSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERG-RILIDGCDISKFGLMDLRKVLGIIPQAPVLFS-----GTVRF 1331 (1622)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCc-eEEECCEecccCCHHHHHhccEEECCCCcccc-----ccHHH
Confidence 3344569999999999999999999999999999998 565432221 1222356899999998775 38889
Q ss_pred HHHHhccccCCcHHHHHHHHHcC-C-----------ceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 202 FASVHGNLYGTSVEAVEAVADAG-K-----------RCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~g-~-----------~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
|+.+... .+.+++.++++.. . ...+.-.-..+...++|+...+.+++.+|++++|||+|+++|.+
T Consensus 1332 NLd~~~~---~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~ 1408 (1622)
T PLN03130 1332 NLDPFNE---HNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVR 1408 (1622)
T ss_pred HhCcCCC---CCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHH
Confidence 9876542 2455555554431 1 11110000112234567777788999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
+++.+++.|++.. ..+|+++++|.++... .+|+++++++|+++..+++.+++..+
T Consensus 1409 Te~~Iq~~I~~~~---------~~~TvI~IAHRL~tI~-~~DrIlVLd~G~IvE~Gt~~eLl~~~ 1463 (1622)
T PLN03130 1409 TDALIQKTIREEF---------KSCTMLIIAHRLNTII-DCDRILVLDAGRVVEFDTPENLLSNE 1463 (1622)
T ss_pred HHHHHHHHHHHHC---------CCCEEEEEeCChHHHH-hCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 9999999988742 2469999999997654 69999999999999999999888664
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=99.55 E-value=6.3e-16 Score=161.95 Aligned_cols=160 Identities=16% Similarity=0.116 Sum_probs=113.1
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc---cccccCCeeEEecChHHHHHHHhhhhhHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~ 202 (399)
.+....+|+.++|+||||||||||++.|+|+++|..| .+.....+. ....++.++|++|++.+|.. ++.||
T Consensus 354 isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G-~I~i~g~~i~~~~~~lr~~i~~V~Q~~~lF~~-----TI~eN 427 (529)
T TIGR02868 354 VSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQG-EVTLDGVSVSSLQDELRRRISVFAQDAHLFDT-----TVRDN 427 (529)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEEhhhHHHHHHhheEEEccCcccccc-----cHHHH
Confidence 3345579999999999999999999999999999999 665433222 22223468999999987753 78899
Q ss_pred HHHhccccCCcHHHHHHHHHc-CCceEEecchh-----------hHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 203 ASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQ-----------GARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 203 ~~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~-----------g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
+.+.... .+.+++.++++. +...++.--|+ .+...++|+...+.+++.+|++++||||++++|+++
T Consensus 428 I~~g~~~--~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~t 505 (529)
T TIGR02868 428 LRLGRPD--ATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAGT 505 (529)
T ss_pred HhccCCC--CCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHH
Confidence 8875321 244555554443 11111000011 122235677777889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCC
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDK 302 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hd 302 (399)
++.+++.+.+.. ...|+++++|.
T Consensus 506 e~~I~~~l~~~~---------~~~TvIiItHr 528 (529)
T TIGR02868 506 ESELLEDLLAAL---------SGKTVVVITHH 528 (529)
T ss_pred HHHHHHHHHHhc---------CCCEEEEEecC
Confidence 999999988642 23489999996
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.55 E-value=4.3e-15 Score=131.44 Aligned_cols=204 Identities=12% Similarity=0.122 Sum_probs=138.9
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc----cccCCeeEEecChHH-HHHHHhhhhhHHHH
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA----MEKDGVHYHFTERSV-MEKAIKDGKFLEFA 203 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~----~~~~~i~yvfq~~~l-f~~~~~~~~~~E~~ 203 (399)
...+|..++++|.||||||||.++|+|..+|..| .+....++... ...+.+-++||++.. |...+.-|+.++.-
T Consensus 35 tL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG-~il~n~~~L~~~Dy~~R~k~IRMiFQDpnts~NPRl~iGqiLd~P 113 (267)
T COG4167 35 TLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSG-EILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDFP 113 (267)
T ss_pred EecCCcEEEEEccCCCcHhHHHHHHhcccCCCCc-eEEECCccccccchHhhhhheeeeecCCccccChhhhhhhHhcch
Confidence 3458999999999999999999999999999999 66544333221 112236689998643 33333334444432
Q ss_pred HHhccccCCcHHHHHHHHHc----CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHH
Q 015825 204 SVHGNLYGTSVEAVEAVADA----GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRL 278 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~----g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L 278 (399)
.- .+..-.+....+++.+. |+. .-....++....-++|++..+.+++..|++.+.||.+.++|...+.++...+
T Consensus 114 L~-l~T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~ 192 (267)
T COG4167 114 LR-LNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLM 192 (267)
T ss_pred hh-hcccCChHHHHHHHHHHHHHhccCccccccchhhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHH
Confidence 11 11111111111111111 110 0011223333334566777778999999999999999999999999999998
Q ss_pred HHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhc
Q 015825 279 RNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSK 341 (399)
Q Consensus 279 ~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~ 341 (399)
-+++++++. .+|+|+.++-......|++++|.+|..+..|++.+++..|..+...+
T Consensus 193 LeLQek~Gi-------SyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t~~v~a~P~~~~TkR 248 (267)
T COG4167 193 LELQEKQGI-------SYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLASPLHELTKR 248 (267)
T ss_pred HHHHHHhCc-------eEEEEechhhHhhhhcccEEEEecCceeecCChhhhhcCCccHHHHH
Confidence 888877643 78999999888888899999999999999999999999997655443
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.1e-16 Score=176.78 Aligned_cols=196 Identities=13% Similarity=0.099 Sum_probs=135.1
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhcc----CCcccceeeecCCCcc---ccccCCeeEEecChHHHHHHHh
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEF----PSMFGFSVSHTTRAPR---AMEKDGVHYHFTERSVMEKAIK 195 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~----~~~~g~~i~~ttr~~~---~~~~~~i~yvfq~~~lf~~~~~ 195 (399)
..+.+....+|++++|+||||||||||+++|+|.. .+..| .+.....+.. ...+..++|++|+...++.+
T Consensus 77 L~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G-~I~~~G~~~~~~~~~~r~~i~yv~Q~d~~~~~l-- 153 (1394)
T TIGR00956 77 LKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEG-VITYDGITPEEIKKHYRGDVVYNAETDVHFPHL-- 153 (1394)
T ss_pred eeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCcee-EEEECCEehHHHHhhcCceeEEeccccccCCCC--
Confidence 33344455699999999999999999999999986 34677 5654332211 11223589999997777766
Q ss_pred hhhhHHHHHHhcccc-------CCcHHHHH-----HHHHc-CCceEEec-----chhhHHHHHcCCcceeEEEEcCCChH
Q 015825 196 DGKFLEFASVHGNLY-------GTSVEAVE-----AVADA-GKRCILDI-----DVQGARSVRASPLDAIFIFICPPSME 257 (399)
Q Consensus 196 ~~~~~E~~~~~~~~~-------g~~~~~i~-----~~~~~-g~~~vldl-----d~~g~~~l~~~~~~~~~ili~~P~ll 257 (399)
++.|++.+...++ +...++.. ..++. ++....+- .+.++....++++..+.+++.+|+++
T Consensus 154 --TV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~~t~vg~~~~~~LSGGerkRvsIA~aL~~~p~vl 231 (1394)
T TIGR00956 154 --TVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQ 231 (1394)
T ss_pred --CHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccccCceeCCCcCCCCCcccchHHHHHHHHHhCCCEE
Confidence 8888887754432 12222211 12221 22111110 01223333566677777999999999
Q ss_pred HHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCH-HHHHHHHHHhhcccCCeeeecCCCccc
Q 015825 258 ELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKL-EECYENLKKHLGLDGSIATNHQTSPKG 330 (399)
Q Consensus 258 lLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdl-eea~~~l~~ii~~~~~~~~~~~~~~~~ 330 (399)
+||||++++|..+...+.+.|+++.++. ..++|+++|++ +++....|+++.+.+|+++..+++.+.
T Consensus 232 llDEPTsgLD~~~~~~i~~~L~~la~~~-------g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~ 298 (1394)
T TIGR00956 232 CWDNATRGLDSATALEFIRALKTSANIL-------DTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKA 298 (1394)
T ss_pred EEeCCCCCcCHHHHHHHHHHHHHHHHhc-------CCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHH
Confidence 9999999999999999999999876432 23788999975 788889999999999999888776554
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-15 Score=160.27 Aligned_cols=170 Identities=18% Similarity=0.167 Sum_probs=117.8
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|+.++|+||||||||||++.|+|+++|..| .+.....+.. ...++.++|++|++.+|. +++.||+
T Consensus 343 l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G-~I~~~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-----~ti~~Ni 416 (529)
T TIGR02857 343 FTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEG-SIAVNGVPLADADADSWRDQIAWVPQHPFLFA-----GTIAENI 416 (529)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEehhhCCHHHHHhheEEEcCCCcccC-----cCHHHHH
Confidence 44569999999999999999999999999999988 6654332211 122346899999987764 2788988
Q ss_pred HHhccccCCcHHHHHHHHHc-CCceEEecch-----------hhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-GKRCILDIDV-----------QGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g~~~vldld~-----------~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+.... .+.+++.++++. +...+++--| ......++|+...+.+++.+|++++||||++++|+.++
T Consensus 417 ~~~~~~--~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~~~~ililDE~ts~lD~~~~ 494 (529)
T TIGR02857 417 RLARPD--ASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETE 494 (529)
T ss_pred hccCCC--CCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 775322 234444444432 2111111001 11222346667777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhc
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~ 315 (399)
+.+.+.+.++. ...|+++++|+++.. ..+|+++.
T Consensus 495 ~~i~~~l~~~~---------~~~t~i~itH~~~~~-~~~d~i~~ 528 (529)
T TIGR02857 495 ALVTEALRALA---------QGRTVLLVTHRLALA-ERADRIVV 528 (529)
T ss_pred HHHHHHHHHhc---------CCCEEEEEecCHHHH-HhCCEEEe
Confidence 99998888743 134899999998654 45666543
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.1e-15 Score=161.54 Aligned_cols=216 Identities=15% Similarity=0.093 Sum_probs=132.7
Q ss_pred chhhhhccCCCceEEEEeCCC--------h-HHHH-HHHHHhCCe-EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhh
Q 015825 86 RILVIKKGSSSDDCLWFLEVD--------T-PYVR-EQKKVVGAE-VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLM 154 (399)
Q Consensus 86 r~L~~~~~~~~~~~i~~~k~D--------~-~~~~-~l~~~~g~~-v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~ 154 (399)
+.-++.|..=+-.-||+.|+- . ++++ ++...+|.. ....+.. ...+|++++|+||||||||||+++|+
T Consensus 42 ~~~~~~e~~c~~c~~c~~~cp~~a~~i~~~p~~~~~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~ 120 (590)
T PRK13409 42 GKPVISEELCIGCGICVKKCPFDAISIVNLPEELEEEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILS 120 (590)
T ss_pred CCceeeHhhccccccccccCCcceEEEeeCchhhccCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHh
Confidence 333344444444567777762 1 2232 244555532 2222233 46799999999999999999999999
Q ss_pred hccCCcccceee-----------ecCCCccc------cccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccCCcHHHH
Q 015825 155 KEFPSMFGFSVS-----------HTTRAPRA------MEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSVEAV 217 (399)
Q Consensus 155 ~~~~~~~g~~i~-----------~ttr~~~~------~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g~~~~~i 217 (399)
|+++|..| .+. ........ .....++|.+|....++... .+++.+++.+.. ....+
T Consensus 121 G~l~p~~G-~i~~~~~~~~~~~~~~G~~l~~~~~~~~~~~~~~~~~~q~~~~~p~~~-~~tv~e~l~~~~-----~~~~~ 193 (590)
T PRK13409 121 GELIPNLG-DYEEEPSWDEVLKRFRGTELQNYFKKLYNGEIKVVHKPQYVDLIPKVF-KGKVRELLKKVD-----ERGKL 193 (590)
T ss_pred CCccCCCc-cccCCCcHHHHHHHhCChHHHHHHHHHhccCcceeecccchhhhhhhh-cchHHHHHHhhh-----HHHHH
Confidence 99999888 543 11111100 00112455566544444322 225555554311 11223
Q ss_pred HHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceE
Q 015825 218 EAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDH 296 (399)
Q Consensus 218 ~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~ 296 (399)
.+.++. +.....+-.+..+....++++..+.+++.+|++++||||++++|+.++..+.+.++++.+ + .++
T Consensus 194 ~~~l~~l~l~~~~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~--g-------~tv 264 (590)
T PRK13409 194 DEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE--G-------KYV 264 (590)
T ss_pred HHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--C-------CEE
Confidence 333322 221122222333333456667777899999999999999999999999999999988642 2 278
Q ss_pred EEeCCCHHHHHHHHHHhhcccC
Q 015825 297 ILYNDKLEECYENLKKHLGLDG 318 (399)
Q Consensus 297 Viv~hdleea~~~l~~ii~~~~ 318 (399)
++++|+++++...+++++.+.+
T Consensus 265 IivsHd~~~l~~~~D~v~vl~~ 286 (590)
T PRK13409 265 LVVEHDLAVLDYLADNVHIAYG 286 (590)
T ss_pred EEEeCCHHHHHHhCCEEEEEeC
Confidence 9999999999888899888765
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-15 Score=175.89 Aligned_cols=187 Identities=13% Similarity=0.018 Sum_probs=137.7
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|+.++|+|+||||||||++.|.+++.+..| .|.....+. ....++.++|++|++.+|. +++.+|+
T Consensus 1307 ~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G-~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~-----gTIr~NL 1380 (1522)
T TIGR00957 1307 VTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEG-EIIIDGLNIAKIGLHDLRFKITIIPQDPVLFS-----GSLRMNL 1380 (1522)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCC-eEEECCEEccccCHHHHHhcCeEECCCCcccC-----ccHHHHc
Confidence 44569999999999999999999999999999888 565433222 1222346899999998775 3788888
Q ss_pred HHhccccCCcHHHHHHHHHc-C-----------CceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-G-----------KRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g-----------~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
...+ ..+.+++.++++. + ....+.-.-..+...++|+...+.+++.+|++++|||+++++|.+++
T Consensus 1381 dp~~---~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te 1457 (1522)
T TIGR00957 1381 DPFS---QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETD 1457 (1522)
T ss_pred Cccc---CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 6433 2345555555443 1 11111110011233456777777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
..+++.|++.. ..+|+++++|.++. +..+|+++++++|+++..|++.+++..
T Consensus 1458 ~~Iq~~l~~~~---------~~~TvI~IAHRl~t-i~~~DrIlVld~G~IvE~G~~~eLl~~ 1509 (1522)
T TIGR00957 1458 NLIQSTIRTQF---------EDCTVLTIAHRLNT-IMDYTRVIVLDKGEVAEFGAPSNLLQQ 1509 (1522)
T ss_pred HHHHHHHHHHc---------CCCEEEEEecCHHH-HHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 99999887632 24699999999955 556899999999999999999888765
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.1e-15 Score=158.66 Aligned_cols=179 Identities=11% Similarity=0.055 Sum_probs=120.1
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
.+....+|+.++|+||||||||||++.|+|+++|..| .+.....+. ....++.++|++|++.+|+.. ..+
T Consensus 342 i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~t-----i~~ 415 (547)
T PRK10522 342 INLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSG-EILLDGKPVTAEQPEDYRKLFSAVFTDFHLFDQL-----LGP 415 (547)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCEECCCCCHHHHhhheEEEecChhHHHHh-----hcc
Confidence 3344569999999999999999999999999999988 555432221 112234689999998887653 223
Q ss_pred HHHHhccccCCcHHHHHHHHHc-CCceEEecc-----hhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHH
Q 015825 202 FASVHGNLYGTSVEAVEAVADA-GKRCILDID-----VQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQIL 275 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~-g~~~vldld-----~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~ 275 (399)
+. ...+.+.+.+.++. +....++.. -......++|+...+.+++.+|++++||||++++|+.+++.+.
T Consensus 416 n~------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~ 489 (547)
T PRK10522 416 EG------KPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFY 489 (547)
T ss_pred cc------CchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHH
Confidence 20 01122233332322 111111110 0112223456666777999999999999999999999999988
Q ss_pred HHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeec
Q 015825 276 KRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNH 324 (399)
Q Consensus 276 ~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~ 324 (399)
+.+.+.... ...|+++++|+++ ....+++++.+++|.+...
T Consensus 490 ~~l~~~~~~-------~~~tvi~itH~~~-~~~~~d~i~~l~~G~i~e~ 530 (547)
T PRK10522 490 QVLLPLLQE-------MGKTIFAISHDDH-YFIHADRLLEMRNGQLSEL 530 (547)
T ss_pred HHHHHHHHh-------CCCEEEEEEechH-HHHhCCEEEEEECCEEEEe
Confidence 888654321 1238899999984 5678999999999887754
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.8e-15 Score=162.92 Aligned_cols=172 Identities=11% Similarity=0.077 Sum_probs=113.7
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHH--H
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEF--A 203 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~--~ 203 (399)
.++...+|++++|+||||||||||+++|+|+++|..| .+.... ...++|++|+.. ..+ ++.++ .
T Consensus 528 vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G-~I~~~~-------~~~igyv~Q~~~--~~l----~~~~~~~~ 593 (718)
T PLN03073 528 LNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSG-TVFRSA-------KVRMAVFSQHHV--DGL----DLSSNPLL 593 (718)
T ss_pred cEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc-eEEECC-------ceeEEEEecccc--ccC----CcchhHHH
Confidence 3344569999999999999999999999999999888 554321 124899999741 111 11111 1
Q ss_pred HHhccccCCcHHHHHHHHHcC-Cc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHH
Q 015825 204 SVHGNLYGTSVEAVEAVADAG-KR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNA 281 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~g-~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~ 281 (399)
.+.....+.....+...+... .. ...+..+..+....++++..+.+++.+|++++||||++++|+.+.+.+.+.+..+
T Consensus 594 ~~~~~~~~~~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~ 673 (718)
T PLN03073 594 YMMRCFPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF 673 (718)
T ss_pred HHHHhcCCCCHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc
Confidence 111111122334444444331 11 0111112222333456666777999999999999999999998887776666542
Q ss_pred HHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeee
Q 015825 282 KEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIAT 322 (399)
Q Consensus 282 ~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~ 322 (399)
. .++|+++||++.+...+++++.+.+|.++
T Consensus 674 ----------~-gtvIivSHd~~~i~~~~drv~~l~~G~i~ 703 (718)
T PLN03073 674 ----------Q-GGVLMVSHDEHLISGSVDELWVVSEGKVT 703 (718)
T ss_pred ----------C-CEEEEEECCHHHHHHhCCEEEEEECCEEE
Confidence 1 28899999999999999999999988776
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.53 E-value=3.5e-15 Score=171.02 Aligned_cols=193 Identities=13% Similarity=0.087 Sum_probs=134.0
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCc---ccceeeecCCCccc-cccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM---FGFSVSHTTRAPRA-MEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~---~g~~i~~ttr~~~~-~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
.+....+|++++|+||||||||||+++|+|.+.+. .| .+.....+... ..+..++|++|+...++.+ ++.|
T Consensus 184 vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G-~I~~nG~~~~~~~~~~~i~yv~Q~d~~~~~l----TV~E 258 (1470)
T PLN03140 184 ASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSG-EITYNGYRLNEFVPRKTSAYISQNDVHVGVM----TVKE 258 (1470)
T ss_pred CeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCccee-EEEECCEechhhcccceeEEecccccCCCcC----cHHH
Confidence 33455699999999999999999999999998876 67 55543322111 1134589999997777776 8888
Q ss_pred HHHHhccccCC----------cHHH----------H------------------HHHHHc-CCceEE-----ecchhhHH
Q 015825 202 FASVHGNLYGT----------SVEA----------V------------------EAVADA-GKRCIL-----DIDVQGAR 237 (399)
Q Consensus 202 ~~~~~~~~~g~----------~~~~----------i------------------~~~~~~-g~~~vl-----dld~~g~~ 237 (399)
++.+...+++. ..++ + ...++. |+.... +-.+.++.
T Consensus 259 tL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~vg~~~~rglS 338 (1470)
T PLN03140 259 TLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIVGDEMIRGIS 338 (1470)
T ss_pred HHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCceeCCccccCCC
Confidence 88876554321 0110 0 001111 111100 10112223
Q ss_pred HHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCH-HHHHHHHHHhhcc
Q 015825 238 SVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKL-EECYENLKKHLGL 316 (399)
Q Consensus 238 ~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdl-eea~~~l~~ii~~ 316 (399)
...++++....+++.+|++++||||++++|..+..++.+.|+++.++. ..++++++|++ +++++..|+++.+
T Consensus 339 GGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~-------g~Tviis~Hqp~~~i~~lfD~vilL 411 (1470)
T PLN03140 339 GGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLT-------EATVLMSLLQPAPETFDLFDDIILL 411 (1470)
T ss_pred cccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhc-------CCEEEEEecCCCHHHHHHhheEEEe
Confidence 334667777789999999999999999999999999999999875432 23888999864 7899999999999
Q ss_pred cCCeeeecCCCccc
Q 015825 317 DGSIATNHQTSPKG 330 (399)
Q Consensus 317 ~~~~~~~~~~~~~~ 330 (399)
.+|+++..|++.+.
T Consensus 412 ~~G~ivy~G~~~~~ 425 (1470)
T PLN03140 412 SEGQIVYQGPRDHI 425 (1470)
T ss_pred eCceEEEeCCHHHH
Confidence 99999888876554
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.53 E-value=7.5e-16 Score=154.32 Aligned_cols=186 Identities=20% Similarity=0.190 Sum_probs=133.0
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC----ccccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
+...+|+.++++||||||||||.++|.|..+|..| .+....-. .+...-+.+||.+|+.++|+- |+.||+
T Consensus 357 F~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G-~VRLDga~l~qWd~e~lG~hiGYLPQdVeLF~G-----TIaeNI 430 (580)
T COG4618 357 FALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSG-SVRLDGADLRQWDREQLGRHIGYLPQDVELFDG-----TIAENI 430 (580)
T ss_pred eEecCCceEEEECCCCccHHHHHHHHHcccccCCC-cEEecchhhhcCCHHHhccccCcCcccceecCC-----cHHHHH
Confidence 33458999999999999999999999999999888 66643221 222222458999999998864 788887
Q ss_pred HHhccccCCcHHHHHHHH-HcCCc-eEEecchhhHH-----------HHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 204 SVHGNLYGTSVEAVEAVA-DAGKR-CILDIDVQGAR-----------SVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~-~~g~~-~vldld~~g~~-----------~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
.-.+.- .+.+.+-++. ..+-+ .++.+ |+|+. ..++|+...+.+|.-+|.+.+||||-+++|.+.
T Consensus 431 aRf~~~--~d~~kIieAA~lAgvHelIl~l-P~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNsNLD~~G 507 (580)
T COG4618 431 ARFGEE--ADPEKVIEAARLAGVHELILRL-PQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEG 507 (580)
T ss_pred Hhcccc--CCHHHHHHHHHHcChHHHHHhC-cCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCCCcchhH
Confidence 654421 1222222222 11111 11111 22222 235666677779999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
+..+.+.+..++.+ .+++|+++|-+ .++..+|+++.+++|.+...|...+++
T Consensus 508 E~AL~~Ai~~~k~r--------G~~vvviaHRP-s~L~~~Dkilvl~~G~~~~FG~r~eVL 559 (580)
T COG4618 508 EAALAAAILAAKAR--------GGTVVVIAHRP-SALASVDKILVLQDGRIAAFGPREEVL 559 (580)
T ss_pred HHHHHHHHHHHHHc--------CCEEEEEecCH-HHHhhcceeeeecCChHHhcCCHHHHH
Confidence 99999999887643 66899999987 567789999999999888888765554
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.4e-15 Score=158.58 Aligned_cols=178 Identities=13% Similarity=0.083 Sum_probs=120.0
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
.+....+|+.++|+||||||||||++.|+|+++|..| .+........ ...+..++|++|++.+|... ..+
T Consensus 361 vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G-~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~t-----i~~ 434 (555)
T TIGR01194 361 IDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEG-EILLDGAAVSADSRDDYRDLFSAIFADFHLFDDL-----IGP 434 (555)
T ss_pred ceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEECCCCCHHHHHhhCcEEccChhhhhhh-----hhc
Confidence 3345569999999999999999999999999999999 6654332221 11234589999998877653 333
Q ss_pred HHHHhccccCCcHHHHHHHHHc-CCceEEecchhh------HHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHH
Q 015825 202 FASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQG------ARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQI 274 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g------~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i 274 (399)
+.. .....+.+.+.++. +....++--|+| +...++|+...+.+++.+|++++||||++++|+.+++.+
T Consensus 435 n~~-----~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i 509 (555)
T TIGR01194 435 DEG-----EHASLDNAQQYLQRLEIADKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFF 509 (555)
T ss_pred ccc-----cchhHHHHHHHHHHcCCchhhcccccccCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHH
Confidence 310 01123333333332 221111111222 223356667777799999999999999999999999999
Q ss_pred HHHHHH-HHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 275 LKRLRN-AKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 275 ~~~L~~-~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
.+.+.+ +.. ...|+++++|+++ ....+|+++.+.+|+++.
T Consensus 510 ~~~l~~~~~~--------~~~tiiiisH~~~-~~~~~d~i~~l~~G~i~~ 550 (555)
T TIGR01194 510 YEELLPDLKR--------QGKTIIIISHDDQ-YFELADQIIKLAAGCIVK 550 (555)
T ss_pred HHHHHHHHHh--------CCCEEEEEeccHH-HHHhCCEEEEEECCEEEE
Confidence 876643 221 1238999999986 567899999999987764
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.8e-15 Score=172.34 Aligned_cols=180 Identities=12% Similarity=0.103 Sum_probs=122.9
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeee-cCCCcc----ccccCCeeEEecChHHHHHHHhhhhhH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSH-TTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFL 200 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~-ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~ 200 (399)
.+....+|++++|+||||||||||+++|+|++.|..| .+.. ...... ...+..++|++|++.+|.. ++.
T Consensus 404 isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G-~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~-----TI~ 477 (1466)
T PTZ00265 404 LNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEG-DIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSN-----SIK 477 (1466)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCC-eEEEeCCcchhhCCHHHHHHhccEecccccchhc-----cHH
Confidence 3445679999999999999999999999999999999 5543 222111 1123468999999887752 788
Q ss_pred HHHHHhccc----------c---------------------------------------------CCcHHHHHHHHHc-C
Q 015825 201 EFASVHGNL----------Y---------------------------------------------GTSVEAVEAVADA-G 224 (399)
Q Consensus 201 E~~~~~~~~----------~---------------------------------------------g~~~~~i~~~~~~-g 224 (399)
|++.+.... + ....+.+.++++. +
T Consensus 478 eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~ 557 (1466)
T PTZ00265 478 NNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVL 557 (1466)
T ss_pred HHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhC
Confidence 888764210 0 0111222222211 1
Q ss_pred C-----------ceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCc
Q 015825 225 K-----------RCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGI 293 (399)
Q Consensus 225 ~-----------~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~ 293 (399)
. ...++-....+...++|+...+.+++.+|++++||||++++|+.++..+++.|.++..+ ..
T Consensus 558 l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~-------~g 630 (1466)
T PTZ00265 558 IHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGN-------EN 630 (1466)
T ss_pred cHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhc-------CC
Confidence 1 11111111122233566677778999999999999999999999999999999886431 12
Q ss_pred ceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 294 FDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 294 ~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
.|+|+++|+++.+ ..+++++.+.+|
T Consensus 631 ~TvIiIsHrls~i-~~aD~Iivl~~g 655 (1466)
T PTZ00265 631 RITIIIAHRLSTI-RYANTIFVLSNR 655 (1466)
T ss_pred CEEEEEeCCHHHH-HhCCEEEEEeCC
Confidence 4899999999765 689999999875
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=3.6e-15 Score=159.39 Aligned_cols=196 Identities=17% Similarity=0.135 Sum_probs=116.8
Q ss_pred HhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC--------ccccccCCeeEEecCh
Q 015825 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA--------PRAMEKDGVHYHFTER 187 (399)
Q Consensus 116 ~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~--------~~~~~~~~i~yvfq~~ 187 (399)
.+|-..++.+.++...+|++++|+||||||||||+++|+|.++|..| .+...... ........++|+++..
T Consensus 10 ~~g~~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G-~I~~~~~~~i~~~~q~~~~~~~~~~~~v~~~~ 88 (638)
T PRK10636 10 RRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGG-SYTFPGNWQLAWVNQETPALPQPALEYVIDGD 88 (638)
T ss_pred EeCCceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEecCCCEEEEEecCCCCCCCCHHHHHHHhh
Confidence 34545555555566679999999999999999999999999999888 55432110 0000011123333322
Q ss_pred HHHHHHHhhhhhH-------HHHHHhcc---ccC-CcHHHHHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCC
Q 015825 188 SVMEKAIKDGKFL-------EFASVHGN---LYG-TSVEAVEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPP 254 (399)
Q Consensus 188 ~lf~~~~~~~~~~-------E~~~~~~~---~~g-~~~~~i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P 254 (399)
..+..+...-... .+...... .-+ .....+...+.. +.. ..++..+..+....++++..+.+|+.+|
T Consensus 89 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~~~~~~~~~LSgGerqRv~LA~aL~~~P 168 (638)
T PRK10636 89 REYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRS 168 (638)
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCchhhcCchhhcCHHHHHHHHHHHHHccCC
Confidence 2222110000000 00000000 000 111223333332 111 1122222233334566677778999999
Q ss_pred ChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 255 SMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 255 ~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
++++||||++++|+.+.+.+.+.|..+ ..++|+++||.+.+...+++++.+.+|.+..
T Consensus 169 ~lLLLDEPtn~LD~~~~~~L~~~L~~~-----------~~tviivsHd~~~l~~~~d~i~~L~~G~i~~ 226 (638)
T PRK10636 169 DLLLLDEPTNHLDLDAVIWLEKWLKSY-----------QGTLILISHDRDFLDPIVDKIIHIEQQSLFE 226 (638)
T ss_pred CEEEEcCCCCcCCHHHHHHHHHHHHhC-----------CCeEEEEeCCHHHHHHhcCEEEEEeCCEEEE
Confidence 999999999999999888887777652 1288999999999999999999999998753
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=2.6e-15 Score=173.72 Aligned_cols=192 Identities=14% Similarity=0.072 Sum_probs=139.8
Q ss_pred eccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhh
Q 015825 124 WSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKF 199 (399)
Q Consensus 124 ~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~ 199 (399)
.+.+....+|+.++|+|+||||||||++.|.+++.+..| .|.....+. ....++.++|++|++.+|. +++
T Consensus 1327 ~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G-~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~-----gTI 1400 (1560)
T PTZ00243 1327 RGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGG-EIRVNGREIGAYGLRELRRQFSMIPQDPVLFD-----GTV 1400 (1560)
T ss_pred ecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEEcccCCHHHHHhcceEECCCCcccc-----ccH
Confidence 334445569999999999999999999999999999888 555433222 1222456899999998775 378
Q ss_pred HHHHHHhccccCCcHHHHHHHHHc-CCceEE-------e--cch--hhHHHHHcCCcceeEEEEcC-CChHHHHHHHHhC
Q 015825 200 LEFASVHGNLYGTSVEAVEAVADA-GKRCIL-------D--IDV--QGARSVRASPLDAIFIFICP-PSMEELEERLRAR 266 (399)
Q Consensus 200 ~E~~~~~~~~~g~~~~~i~~~~~~-g~~~vl-------d--ld~--~g~~~l~~~~~~~~~ili~~-P~lllLDEpl~~l 266 (399)
.+|+.... ..+.+++.++++. +...++ | +.. ..+...++|+...+.+|+.. |++++|||+++++
T Consensus 1401 reNIdp~~---~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaL 1477 (1560)
T PTZ00243 1401 RQNVDPFL---EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANI 1477 (1560)
T ss_pred HHHhCccc---CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccC
Confidence 88886533 2345566655543 221111 1 000 11222356677777799984 8999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 267 D~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
|..+++.+++.|++.. ..+|+|+++|.++ ++..+|+++++++|+++..|++.+++..+
T Consensus 1478 D~~te~~Iq~~L~~~~---------~~~TvI~IAHRl~-ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~ 1535 (1560)
T PTZ00243 1478 DPALDRQIQATVMSAF---------SAYTVITIAHRLH-TVAQYDKIIVMDHGAVAEMGSPRELVMNR 1535 (1560)
T ss_pred CHHHHHHHHHHHHHHC---------CCCEEEEEeccHH-HHHhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 9999999999888632 2469999999994 55689999999999999999999888654
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.5e-15 Score=155.73 Aligned_cols=200 Identities=16% Similarity=0.128 Sum_probs=142.2
Q ss_pred CCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC---cccceeeecCCCccc-cccCCeeEEecChHHHHHH
Q 015825 118 GAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS---MFGFSVSHTTRAPRA-MEKDGVHYHFTERSVMEKA 193 (399)
Q Consensus 118 g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~---~~g~~i~~ttr~~~~-~~~~~i~yvfq~~~lf~~~ 193 (399)
.++.+..+.+....+|++.+++||||||||||+++|+|..+. ..| .+....++... ....-.+|+.|+..+++.+
T Consensus 41 ~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G-~ilvNG~~~~~~~~~~~s~yV~QdD~l~~~L 119 (613)
T KOG0061|consen 41 KTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSG-EILLNGRPRDSRSFRKISGYVQQDDVLLPTL 119 (613)
T ss_pred ccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceE-EEEECCccCchhhhhheeEEEcccccccccc
Confidence 345566656666679999999999999999999999998864 455 55554433222 2223479999998888888
Q ss_pred HhhhhhHHHHHHhccccCC---cHHHHHHHHHc-----CCce----EEe-cchhhHHHHHcCCcceeEEEEcCCChHHHH
Q 015825 194 IKDGKFLEFASVHGNLYGT---SVEAVEAVADA-----GKRC----ILD-IDVQGARSVRASPLDAIFIFICPPSMEELE 260 (399)
Q Consensus 194 ~~~~~~~E~~~~~~~~~g~---~~~~i~~~~~~-----g~~~----vld-ld~~g~~~l~~~~~~~~~ili~~P~lllLD 260 (399)
|+.|.+.|..+++-. +.++.++++++ ++.. ++. ....+.....++++....=++.+|.++.+|
T Consensus 120 ----TV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~~~t~ig~~~~rgiSGGErkRvsia~Ell~~P~iLflD 195 (613)
T KOG0061|consen 120 ----TVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKCADTLIGNPGIRGLSGGERKRVSIALELLTDPSILFLD 195 (613)
T ss_pred ----cHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhhccceecCCCCCccccchhhHHHHHHHHHcCCCEEEec
Confidence 999999998776432 33444443332 1111 111 011222223345556666788899999999
Q ss_pred HHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC-CHHHHHHHHHHhhcccCCeeeecCCCccc
Q 015825 261 ERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKKHLGLDGSIATNHQTSPKG 330 (399)
Q Consensus 261 Epl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h-dleea~~~l~~ii~~~~~~~~~~~~~~~~ 330 (399)
|||+++|..+..++-+.|+++.++ ..++|..-| .-.+.+...|+++.+..|..+..|++.+.
T Consensus 196 EPTSGLDS~sA~~vv~~Lk~lA~~--------grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~~~~~ 258 (613)
T KOG0061|consen 196 EPTSGLDSFSALQVVQLLKRLARS--------GRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGSPREL 258 (613)
T ss_pred CCCCCcchhhHHHHHHHHHHHHhC--------CCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecCHHHH
Confidence 999999999999999999987654 347887777 66788999999999999999888876543
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-15 Score=140.58 Aligned_cols=196 Identities=17% Similarity=0.153 Sum_probs=116.9
Q ss_pred eEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC-----ccccccCCeeEEecChHH-HHHH
Q 015825 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA-----PRAMEKDGVHYHFTERSV-MEKA 193 (399)
Q Consensus 120 ~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~-----~~~~~~~~i~yvfq~~~l-f~~~ 193 (399)
+.+.-+-+....+|+-++|+||||||||||++++++.+++..| .+....+. .....++.+||+...... |..
T Consensus 44 k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg-~~~~~G~~~G~~~~~~elrk~IG~vS~~L~~~~~~- 121 (257)
T COG1119 44 KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSG-DVTLLGRRFGKGETIFELRKRIGLVSSELHERFRV- 121 (257)
T ss_pred EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCC-ceeeeeeeccCCcchHHHHHHhCccCHHHHhhccc-
Confidence 4444444455679999999999999999999999999999766 33221111 112223347777433211 211
Q ss_pred HhhhhhHHHH---HH--hcccc-CCcHHHHH---HHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHH
Q 015825 194 IKDGKFLEFA---SV--HGNLY-GTSVEAVE---AVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERL 263 (399)
Q Consensus 194 ~~~~~~~E~~---~~--~~~~~-g~~~~~i~---~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl 263 (399)
..++.+.+ .| .+.++ .....+.. ..++. +...+.+-....+....+++.-.+.+++.+|.+++||||+
T Consensus 122 --~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~la~r~~~~LS~Ge~rrvLiaRALv~~P~LLiLDEP~ 199 (257)
T COG1119 122 --RETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPA 199 (257)
T ss_pred --ccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhhccCchhhcCHhHHHHHHHHHHHhcCCCEEEecCcc
Confidence 11222222 11 11112 12222221 11111 1111111111111112233344556999999999999999
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecC
Q 015825 264 RARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQ 325 (399)
Q Consensus 264 ~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~ 325 (399)
.++|...++.+.+++.++... ....+.++|+|..+|+..-+.+++.+.+|.++..+
T Consensus 200 ~GLDl~~re~ll~~l~~~~~~------~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g 255 (257)
T COG1119 200 QGLDLIAREQLLNRLEELAAS------PGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255 (257)
T ss_pred ccCChHHHHHHHHHHHHHhcC------CCCceEEEEEcchhhcccccceEEEeeCCceeecc
Confidence 999999999999988876532 12347889999999999999998888888777654
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.9e-15 Score=171.75 Aligned_cols=194 Identities=14% Similarity=0.086 Sum_probs=132.0
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCC--cccceeeecCCCcc-ccccCCeeEEecChHHHHHHHhhh
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPS--MFGFSVSHTTRAPR-AMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~--~~g~~i~~ttr~~~-~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
.+..+.+....+|++++|+||||||||||+++|+|...+ ..| .+.....+.. ....+.++|++|+..+++.+
T Consensus 894 ~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G-~I~inG~~~~~~~~~~~igyv~Q~d~~~~~l---- 968 (1470)
T PLN03140 894 QLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEG-DIRISGFPKKQETFARISGYCEQNDIHSPQV---- 968 (1470)
T ss_pred eEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccc-eEEECCccCChHHhhhheEEEccccccCCCC----
Confidence 344444455679999999999999999999999998653 456 5544332221 11124579999997777665
Q ss_pred hhHHHHHHhcccc---CCcHHH----HHHHHHc-CCceEEecc-----hhhHHHHHcCCcceeEEEEcCCChHHHHHHHH
Q 015825 198 KFLEFASVHGNLY---GTSVEA----VEAVADA-GKRCILDID-----VQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (399)
Q Consensus 198 ~~~E~~~~~~~~~---g~~~~~----i~~~~~~-g~~~vldld-----~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~ 264 (399)
++.|++.+...++ ..+.++ +.+.++. ++....+-- ..++....++++..+.+++.+|++++||||++
T Consensus 969 TV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTs 1048 (1470)
T PLN03140 969 TVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1048 (1470)
T ss_pred cHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCC
Confidence 8888887764332 112222 2222222 111111110 12333345666777789999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHH-HHHHHHHHhhcccC-CeeeecCCC
Q 015825 265 ARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLE-ECYENLKKHLGLDG-SIATNHQTS 327 (399)
Q Consensus 265 ~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdle-ea~~~l~~ii~~~~-~~~~~~~~~ 327 (399)
++|..+...+.+.|+++.++ ..++|+++|+++ ++...+++++.+.+ |+++..+++
T Consensus 1049 gLD~~~a~~v~~~L~~l~~~--------g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G~~ 1105 (1470)
T PLN03140 1049 GLDARAAAIVMRTVRNTVDT--------GRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSGPL 1105 (1470)
T ss_pred CCCHHHHHHHHHHHHHHHHC--------CCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEECCc
Confidence 99999999999999987532 238899999987 56788899999985 787776654
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.48 E-value=9e-15 Score=168.98 Aligned_cols=189 Identities=16% Similarity=0.072 Sum_probs=136.1
Q ss_pred eccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhh
Q 015825 124 WSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKF 199 (399)
Q Consensus 124 ~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~ 199 (399)
.+.+....+|+.++|+|+||||||||+++|.++++ ..| .|.....+. ....+..++|++|++.+|. +++
T Consensus 1236 ~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G-~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~-----GTI 1308 (1490)
T TIGR01271 1236 QDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEG-EIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFS-----GTF 1308 (1490)
T ss_pred eccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCc-EEEECCEEcccCCHHHHHhceEEEeCCCccCc-----cCH
Confidence 33344556999999999999999999999999987 567 555432221 1223456899999998775 378
Q ss_pred HHHHHHhccccCCcHHHHHHHHHcC------------CceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCC
Q 015825 200 LEFASVHGNLYGTSVEAVEAVADAG------------KRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARG 267 (399)
Q Consensus 200 ~E~~~~~~~~~g~~~~~i~~~~~~g------------~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD 267 (399)
.+|+...+. .+.+++.++++.. +...+.-.-..+...++|+...+.+++.+|++++|||+++++|
T Consensus 1309 R~NLdp~~~---~tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD 1385 (1490)
T TIGR01271 1309 RKNLDPYEQ---WSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLD 1385 (1490)
T ss_pred HHHhCcccC---CCHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCC
Confidence 888865431 2445555544431 1111110001122345666777789999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 268 TETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 268 ~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
..++..+++.|++.. ..+|+++++|.++. +..+|+++++.+|+++..++|.+++.
T Consensus 1386 ~~Te~~I~~~L~~~~---------~~~TvI~IaHRl~t-i~~~DrIlvL~~G~ivE~g~p~~Ll~ 1440 (1490)
T TIGR01271 1386 PVTLQIIRKTLKQSF---------SNCTVILSEHRVEA-LLECQQFLVIEGSSVKQYDSIQKLLN 1440 (1490)
T ss_pred HHHHHHHHHHHHHHc---------CCCEEEEEecCHHH-HHhCCEEEEEECCEEEEeCCHHHHHc
Confidence 999999999998732 24699999999965 45699999999999999999988875
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.7e-12 Score=116.82 Aligned_cols=173 Identities=24% Similarity=0.286 Sum_probs=119.6
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccCCccc--ceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcccc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFPSMFG--FSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g--~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~ 210 (399)
|++++|+|||||||||+++.|+..+....+ ...++++++... .+..|.|.+...|..+...+.+.+...+.+..|
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~~~~~~~~~---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRRVITRPASA---GGENHIALSTEEFDHREDGGAFALSWQAHGLSY 77 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeEEcccCCCC---CCccccccCHHHHHHHHHCCCEEEEEeecCccc
Confidence 578999999999999999999998754311 233567765432 355688888777776666666776666667778
Q ss_pred CCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccC
Q 015825 211 GTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKS 290 (399)
Q Consensus 211 g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~ 290 (399)
+.+. .+...+..+..++++.........+........+++. ++.+++-+|+..|+....+.+.+++...... ..
T Consensus 78 g~~~-~i~~~~~~g~~vv~~g~~~~~~~~~~~~~~~~~i~l~-~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~~~-~~--- 151 (179)
T TIGR02322 78 GIPA-EIDQWLEAGDVVVVNGSRAVLPEARQRYPNLLVVNIT-ASPDVLAQRLAARGRESREEIEERLARSARF-AA--- 151 (179)
T ss_pred cChH-HHHHHHhcCCEEEEECCHHHHHHHHHHCCCcEEEEEE-CCHHHHHHHHHHcCCCCHHHHHHHHHHHhhc-cc---
Confidence 8886 4666667788888888766555555444444555554 6789999999988776777888887643211 10
Q ss_pred CCcceEE-EeCC-CHHHHHHHHHHhhc
Q 015825 291 SGIFDHI-LYND-KLEECYENLKKHLG 315 (399)
Q Consensus 291 ~~~~t~V-iv~h-dleea~~~l~~ii~ 315 (399)
..++++ +.+. +++++...+.+++.
T Consensus 152 -~~~~~~vi~~~~~~ee~~~~i~~~l~ 177 (179)
T TIGR02322 152 -APADVTTIDNSGSLEVAGETLLRLLR 177 (179)
T ss_pred -ccCCEEEEeCCCCHHHHHHHHHHHHc
Confidence 223555 5554 89999998887653
|
Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.6e-14 Score=149.88 Aligned_cols=187 Identities=17% Similarity=0.095 Sum_probs=118.2
Q ss_pred HHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHH
Q 015825 114 KKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193 (399)
Q Consensus 114 ~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~ 193 (399)
...+|.+.++-..+....+|+.+||+|+||||||||+++|+|...+..| .+.+... -.++|+.|+....+..
T Consensus 10 s~~~g~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G-~i~~~~~-------~~v~~l~Q~~~~~~~~ 81 (530)
T COG0488 10 SLAYGDRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSG-EVTRPKG-------LRVGYLSQEPPLDPEK 81 (530)
T ss_pred EEeeCCceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCC-eEeecCC-------ceEEEeCCCCCcCCCc
Confidence 3456777777777777789999999999999999999999999999999 5543211 0167888876544321
Q ss_pred HhhhhhHHHHHHhc-----------ccc----------------------CC-cHHHHHHHHHcCCceEE-ecchhhHHH
Q 015825 194 IKDGKFLEFASVHG-----------NLY----------------------GT-SVEAVEAVADAGKRCIL-DIDVQGARS 238 (399)
Q Consensus 194 ~~~~~~~E~~~~~~-----------~~~----------------------g~-~~~~i~~~~~~g~~~vl-dld~~g~~~ 238 (399)
++.+.+.-.. ..+ +. ....+..++. ++.+-- +-....+..
T Consensus 82 ----tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~-gLg~~~~~~~~~~LSG 156 (530)
T COG0488 82 ----TVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALL-GLGFPDEDRPVSSLSG 156 (530)
T ss_pred ----cHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHh-cCCCCcccCchhhcCH
Confidence 1221111000 000 00 0011111111 111000 111111222
Q ss_pred HHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccC
Q 015825 239 VRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDG 318 (399)
Q Consensus 239 l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~ 318 (399)
.++.++..+.+|+.+|++++|||||+.||.++.+.+...|..+. . ++|+|+||-+-.=..+.+++.+..
T Consensus 157 G~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~----------g-tviiVSHDR~FLd~V~t~I~~ld~ 225 (530)
T COG0488 157 GWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP----------G-TVIVVSHDRYFLDNVATHILELDR 225 (530)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC----------C-cEEEEeCCHHHHHHHhhheEEecC
Confidence 23444555669999999999999999999988888877777521 2 889999998877777888888888
Q ss_pred Ceeeec
Q 015825 319 SIATNH 324 (399)
Q Consensus 319 ~~~~~~ 324 (399)
+.+...
T Consensus 226 g~l~~y 231 (530)
T COG0488 226 GKLTPY 231 (530)
T ss_pred CceeEe
Confidence 766543
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.4e-15 Score=128.85 Aligned_cols=133 Identities=17% Similarity=0.179 Sum_probs=92.6
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|++++|+||||+|||||+++|+|.+++..| .+........ ......++|+||
T Consensus 20 ~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G-~i~~~~~~~~~~~~~~~~~~i~~~~q------------------ 80 (157)
T cd00267 20 LTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSG-EILIDGKDIAKLPLEELRRRIGYVPQ------------------ 80 (157)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcc-EEEECCEEcccCCHHHHHhceEEEee------------------
Confidence 44568999999999999999999999999988777 4443221110 011233566665
Q ss_pred HHhccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 015825 204 SVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKE 283 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~ 283 (399)
.+.. .+++...+.+++.+|++.+||||++++|..++..+.+.+.++..
T Consensus 81 --------lS~G------------------------~~~r~~l~~~l~~~~~i~ilDEp~~~lD~~~~~~l~~~l~~~~~ 128 (157)
T cd00267 81 --------LSGG------------------------QRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAE 128 (157)
T ss_pred --------CCHH------------------------HHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHH
Confidence 0000 01111222355667899999999999999999999888887643
Q ss_pred HHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 284 EIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 284 ~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
. ..++++++|+++++...+++++.+.++
T Consensus 129 ~--------~~tii~~sh~~~~~~~~~d~i~~l~~g 156 (157)
T cd00267 129 E--------GRTVIIVTHDPELAELAADRVIVLKDG 156 (157)
T ss_pred C--------CCEEEEEeCCHHHHHHhCCEEEEEeCc
Confidence 2 238899999999988777887766553
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.8e-14 Score=129.74 Aligned_cols=149 Identities=15% Similarity=0.119 Sum_probs=92.8
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhc
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHG 207 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~ 207 (399)
+...+|++++|+||||||||||++++.+ ..| .+....... ......+.|++| . .+++...+..
T Consensus 16 l~i~~G~~~~l~G~nG~GKSTLl~~il~----~~G-~v~~~~~~~-~~~~~~~~~~~q----~-------~~l~~~~L~~ 78 (176)
T cd03238 16 VSIPLNVLVVVTGVSGSGKSTLVNEGLY----ASG-KARLISFLP-KFSRNKLIFIDQ----L-------QFLIDVGLGY 78 (176)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhh----cCC-cEEECCccc-ccccccEEEEhH----H-------HHHHHcCCCc
Confidence 4556999999999999999999999864 345 333222111 111123566655 0 1111111100
Q ss_pred cccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcC--CChHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 015825 208 NLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICP--PSMEELEERLRARGTETEDQILKRLRNAKEEI 285 (399)
Q Consensus 208 ~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~--P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l 285 (399)
.. ++-.+..+....+++...+.+++.+ |+++++|||++++|+.+.+.+.+.++++.+.
T Consensus 79 ~~-------------------~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~- 138 (176)
T cd03238 79 LT-------------------LGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDL- 138 (176)
T ss_pred cc-------------------cCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC-
Confidence 00 0000001111223344455578888 9999999999999999999999999876421
Q ss_pred HhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCee
Q 015825 286 KQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIA 321 (399)
Q Consensus 286 ~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~ 321 (399)
..++++++|+++++ ..+++++.+.+++.
T Consensus 139 -------g~tvIivSH~~~~~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 139 -------GNTVILIEHNLDVL-SSADWIIDFGPGSG 166 (176)
T ss_pred -------CCEEEEEeCCHHHH-HhCCEEEEECCCCC
Confidence 23889999999875 57888888876543
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.45 E-value=5.5e-15 Score=147.14 Aligned_cols=188 Identities=20% Similarity=0.201 Sum_probs=131.5
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc----cccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA----MEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~----~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
+...+|++++++||||+||||+++.|.+.+....| .|.......+. ..+..+|.+||+..+|.. +...|+
T Consensus 559 F~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sG-sI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNd-----TI~yNI 632 (790)
T KOG0056|consen 559 FTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSG-SITIDGQDIRNVTQSSLRSSIGVVPQDTVLFND-----TILYNI 632 (790)
T ss_pred EEecCCcEEEEECCCCCchhHHHHHHHHHhhccCc-eEEEcCchHHHHHHHHHHHhcCcccCcceeecc-----eeeehe
Confidence 34468999999999999999999999999988777 66544333221 123358999999887754 455555
Q ss_pred HHhccccCCcHHHHHHHHHcCC-c-eEEecchhhHHH------H-----HcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 204 SVHGNLYGTSVEAVEAVADAGK-R-CILDIDVQGARS------V-----RASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~g~-~-~vldld~~g~~~------l-----~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
.|..- +...+++.++.++.. . .++. -|++... + .+|++..+..++..|.+.+|||.++++|..+
T Consensus 633 ryak~--~AsneevyaAAkAA~IHdrIl~-fPegY~t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~t 709 (790)
T KOG0056|consen 633 RYAKP--SASNEEVYAAAKAAQIHDRILQ-FPEGYNTRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNT 709 (790)
T ss_pred eecCC--CCChHHHHHHHHHhhHHHHHhc-CchhhhhhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCcc
Confidence 55422 122344443333211 0 0111 2333322 1 2455566668888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
+.+||+.|.++... -|.|++.|.+.... .+|.++..++|.++..|+.++++...
T Consensus 710 ER~IQaaL~rlca~---------RTtIVvAHRLSTiv-nAD~ILvi~~G~IvErG~HeeLl~rd 763 (790)
T KOG0056|consen 710 ERAIQAALARLCAN---------RTTIVVAHRLSTIV-NADLILVISNGRIVERGRHEELLKRD 763 (790)
T ss_pred HHHHHHHHHHHhcC---------CceEEEeeeehhee-cccEEEEEeCCeEeecCcHHHHHhcc
Confidence 99999999987532 27788888775554 57889999999999999988887663
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=99.45 E-value=1.6e-14 Score=155.04 Aligned_cols=171 Identities=16% Similarity=0.149 Sum_probs=115.2
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
+..+.+....+|+.++|+||||||||||+++|+|++++..| .+.... ...++|++|++.+++. ++.+
T Consensus 467 il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G-~i~~~~-------~~~i~~v~Q~~~l~~~-----tv~e 533 (659)
T TIGR00954 467 LIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGG-RLTKPA-------KGKLFYVPQRPYMTLG-----TLRD 533 (659)
T ss_pred eeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCC-eEeecC-------CCcEEEECCCCCCCCc-----CHHH
Confidence 33334455679999999999999999999999999988888 443321 2358999999765532 6777
Q ss_pred HHHHhccc-----cCCcHHHHHHHHHc-CCceEEec---------chhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhC
Q 015825 202 FASVHGNL-----YGTSVEAVEAVADA-GKRCILDI---------DVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (399)
Q Consensus 202 ~~~~~~~~-----~g~~~~~i~~~~~~-g~~~vldl---------d~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~l 266 (399)
++.+.... .+...+.+.+.++. +....++. ....+...++|+...+.+++.+|++++||||++++
T Consensus 534 ni~~~~~~~~~~~~~~~~~~i~~~l~~~~l~~~~~~~~g~~~~~~~~~~LSgGqkQRl~iARal~~~p~illLDEpts~L 613 (659)
T TIGR00954 534 QIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAV 613 (659)
T ss_pred HHhcCCChhhhhccCCCHHHHHHHHHHcCCHHHHhhcCCcccccccccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCC
Confidence 77654321 11233444444432 11111110 00112223456667777999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 267 D~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
|+.+++.+.+.+++. ..++++++|+++.. ..+++++.+.
T Consensus 614 D~~~~~~l~~~l~~~-----------~~tvI~isH~~~~~-~~~d~il~l~ 652 (659)
T TIGR00954 614 SVDVEGYMYRLCREF-----------GITLFSVSHRKSLW-KYHEYLLYMD 652 (659)
T ss_pred CHHHHHHHHHHHHHc-----------CCEEEEEeCchHHH-HhCCEEEEEe
Confidence 999988888777541 23889999998764 6788877765
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.5e-14 Score=165.42 Aligned_cols=180 Identities=13% Similarity=0.089 Sum_probs=128.7
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
.+....+|+.++|+||||||||||++.|+|++++..|.... ....++|++|++.+|. +++.||+.+
T Consensus 636 inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~---------~~~~Iayv~Q~p~Lf~-----gTIreNI~f 701 (1495)
T PLN03232 636 INLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV---------IRGSVAYVPQVSWIFN-----ATVRENILF 701 (1495)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE---------ecCcEEEEcCcccccc-----ccHHHHhhc
Confidence 33455699999999999999999999999999988773321 1234899999987764 388899987
Q ss_pred hccccCCcHHHHHHHHHc------------CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 206 HGNLYGTSVEAVEAVADA------------GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 206 ~~~~~g~~~~~i~~~~~~------------g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
... ...+.+.++++. |....+.-.-..+...++|+...+.+++.+|++.+||||++++|..+++.
T Consensus 702 g~~---~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~ 778 (1495)
T PLN03232 702 GSD---FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQ 778 (1495)
T ss_pred CCc---cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHH
Confidence 642 234444444432 11111110001122346677778889999999999999999999998887
Q ss_pred HHHH-HHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 274 ILKR-LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 274 i~~~-L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+.+. +.... ...|+|+++|.+. .+..+|+++.+.+|.++..|+..++..
T Consensus 779 I~~~~l~~~l---------~~kT~IlvTH~~~-~l~~aD~Ii~L~~G~i~~~Gt~~eL~~ 828 (1495)
T PLN03232 779 VFDSCMKDEL---------KGKTRVLVTNQLH-FLPLMDRIILVSEGMIKEEGTFAELSK 828 (1495)
T ss_pred HHHHHhhhhh---------cCCEEEEEECChh-hHHhCCEEEEEeCCEEEEecCHHHHHh
Confidence 7554 43321 1238999999985 467899999999999999888777653
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.3e-14 Score=153.30 Aligned_cols=193 Identities=12% Similarity=-0.022 Sum_probs=114.4
Q ss_pred hCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----cccccCCeeEEecChH---
Q 015825 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERS--- 188 (399)
Q Consensus 117 ~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~--- 188 (399)
++...++.+.++...+|++++|+||||||||||+++|+|.+++..| .+....... ........+++++...
T Consensus 13 ~~~~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G-~I~~~~~~~~~~l~q~~~~~~~~~v~~~~~~~~ 91 (635)
T PRK11147 13 FSDAPLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDG-RIIYEQDLIVARLQQDPPRNVEGTVYDFVAEGI 91 (635)
T ss_pred eCCceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCe-EEEeCCCCEEEEeccCCCCCCCCCHHHHHHHhh
Confidence 3434445445556679999999999999999999999999999888 544321100 0000111223333210
Q ss_pred --HHHHHHhhh----------hhHHHHHHhcc-------ccC-CcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeE
Q 015825 189 --VMEKAIKDG----------KFLEFASVHGN-------LYG-TSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIF 248 (399)
Q Consensus 189 --lf~~~~~~~----------~~~E~~~~~~~-------~~g-~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ 248 (399)
.+... ... ...+++.+... ..+ .....+...++... +-.+..+..+....++++..+.
T Consensus 92 ~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~lg-l~~~~~~~~LSgGekqRv~LAr 169 (635)
T PRK11147 92 EEQAEYL-KRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLAQLG-LDPDAALSSLSGGWLRKAALGR 169 (635)
T ss_pred HHHHHHH-HHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHhCC-CCCCCchhhcCHHHHHHHHHHH
Confidence 00000 000 00011111000 000 11222333332211 1011122223334566677778
Q ss_pred EEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 249 IFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 249 ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
+|+.+|++++||||++++|+.+.+.+.+.|..+. .++|+++||.+.+...+++++.+.+|.+..
T Consensus 170 aL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~-----------~tvlivsHd~~~l~~~~d~i~~L~~G~i~~ 233 (635)
T PRK11147 170 ALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ-----------GSIIFISHDRSFIRNMATRIVDLDRGKLVS 233 (635)
T ss_pred HHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC-----------CEEEEEeCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999888888887631 288999999999988899999999998764
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.1e-14 Score=164.96 Aligned_cols=180 Identities=13% Similarity=0.127 Sum_probs=127.2
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhc
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHG 207 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~ 207 (399)
....+|+.++++||||||||||+++|+|++++..| .+.... .++|++|++.+| .+++.||+.+..
T Consensus 659 l~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G-~i~~~g---------~i~yv~Q~~~l~-----~~Ti~eNI~~g~ 723 (1522)
T TIGR00957 659 FSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG-HVHMKG---------SVAYVPQQAWIQ-----NDSLRENILFGK 723 (1522)
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCc-EEEECC---------EEEEEcCCcccc-----CCcHHHHhhcCC
Confidence 44569999999999999999999999999999988 554321 389999997654 238888887653
Q ss_pred cccCCcHHHHHHHHHc------------CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHH
Q 015825 208 NLYGTSVEAVEAVADA------------GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQIL 275 (399)
Q Consensus 208 ~~~g~~~~~i~~~~~~------------g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~ 275 (399)
. + ..+...+.++. |....++-....+...++|+...+.+++.+|++.+||||++++|+.+++.+.
T Consensus 724 ~-~--~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~ 800 (1522)
T TIGR00957 724 A-L--NEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIF 800 (1522)
T ss_pred c-c--CHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHH
Confidence 2 1 22222222211 1111111111122334566677778999999999999999999999999988
Q ss_pred HHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 276 KRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 276 ~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+.+....... ...++|+++|+++.+. .+++++.+.+|++...+++.++..
T Consensus 801 ~~l~~~~~~~------~~~tvIlvTH~~~~l~-~~D~ii~l~~G~i~~~g~~~~l~~ 850 (1522)
T TIGR00957 801 EHVIGPEGVL------KNKTRILVTHGISYLP-QVDVIIVMSGGKISEMGSYQELLQ 850 (1522)
T ss_pred HHHhhhhhhh------cCCEEEEEeCChhhhh-hCCEEEEecCCeEEeeCCHHHHHh
Confidence 8886532111 1248999999997764 599999999999998888766653
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.5e-14 Score=164.82 Aligned_cols=179 Identities=15% Similarity=0.155 Sum_probs=128.3
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcc-cceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMF-GFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~-g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~ 204 (399)
.+....+|+.++|+||||||||||++.|+|.+++.. | .+.. ...++|++|++.+|. +++.||+.
T Consensus 636 inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG-~I~l---------~~~Iayv~Q~p~Lfn-----gTIreNI~ 700 (1622)
T PLN03130 636 INLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDA-SVVI---------RGTVAYVPQVSWIFN-----ATVRDNIL 700 (1622)
T ss_pred eeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCc-eEEE---------cCeEEEEcCccccCC-----CCHHHHHh
Confidence 334557999999999999999999999999999988 7 4431 234899999987664 38899998
Q ss_pred HhccccCCcHHHHHHHHHc------------CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 205 VHGNLYGTSVEAVEAVADA------------GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~~~~~------------g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
+... + ..+.+.++++. |....+.-.-..+...++|+...+.++..+|++.+||||++++|..+.+
T Consensus 701 fg~~-~--d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~ 777 (1622)
T PLN03130 701 FGSP-F--DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGR 777 (1622)
T ss_pred CCCc-c--cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHH
Confidence 7643 2 34444444332 1111111000012234567777788999999999999999999998877
Q ss_pred HHH-HHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 273 QIL-KRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 273 ~i~-~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
.+. +.+.... ...|+|+++|.++ .+..+|+++.+.+|+++..|+..++..
T Consensus 778 ~I~~~~l~~~l---------~~kTvIlVTH~l~-~l~~aD~Ii~L~~G~i~e~Gt~~eL~~ 828 (1622)
T PLN03130 778 QVFDKCIKDEL---------RGKTRVLVTNQLH-FLSQVDRIILVHEGMIKEEGTYEELSN 828 (1622)
T ss_pred HHHHHHhhHHh---------cCCEEEEEECCHh-HHHhCCEEEEEeCCEEEEeCCHHHHHh
Confidence 664 4454321 1248999999985 567899999999999999888777653
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=99.41 E-value=3.9e-14 Score=163.75 Aligned_cols=179 Identities=17% Similarity=0.145 Sum_probs=125.1
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
.+....+|++++|+||||||||||+++|+|++++..| .+.... .++|++|++.+|+ +++.||+.+
T Consensus 445 i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G-~i~~~g---------~iayv~Q~~~l~~-----~Ti~eNI~~ 509 (1490)
T TIGR01271 445 ISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEG-KIKHSG---------RISFSPQTSWIMP-----GTIKDNIIF 509 (1490)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECC---------EEEEEeCCCccCC-----ccHHHHHHh
Confidence 3445569999999999999999999999999999988 554322 3899999987664 278888876
Q ss_pred hccccCCcHHHHHHHHHc------------CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 206 HGNLYGTSVEAVEAVADA------------GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 206 ~~~~~g~~~~~i~~~~~~------------g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
... +. .....+.++. +....+.-....+...++++...+.+++.+|++.+||||++++|+.+.+.
T Consensus 510 g~~-~~--~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~ 586 (1490)
T TIGR01271 510 GLS-YD--EYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKE 586 (1490)
T ss_pred ccc-cc--hHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 532 21 1111111111 11000110011122335666777779999999999999999999999988
Q ss_pred HHHH-HHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 274 ILKR-LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 274 i~~~-L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+.+. +..+. ...|+|+++|+++.+. .+++++.+.+|.+...+++.++..
T Consensus 587 i~~~~l~~~~---------~~~tvilvtH~~~~~~-~ad~ii~l~~g~i~~~g~~~~l~~ 636 (1490)
T TIGR01271 587 IFESCLCKLM---------SNKTRILVTSKLEHLK-KADKILLLHEGVCYFYGTFSELQA 636 (1490)
T ss_pred HHHHHHHHHh---------cCCeEEEEeCChHHHH-hCCEEEEEECCEEEEEcCHHHHHh
Confidence 8875 44321 1348999999998764 599999999999888887666553
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=6e-14 Score=122.86 Aligned_cols=178 Identities=19% Similarity=0.152 Sum_probs=117.0
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceee-ec-------CCCcc---ccccCCeeEEecChHHHHHHHhh
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS-HT-------TRAPR---AMEKDGVHYHFTERSVMEKAIKD 196 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~-~t-------tr~~~---~~~~~~i~yvfq~~~lf~~~~~~ 196 (399)
+....|++++|-||||+||||++++|.+.+.+..|+... |. +-.++ ...+..+||+.|.....|..
T Consensus 32 lsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~pr~vl~vRr~TiGyVSQFLRviPRV--- 108 (235)
T COG4778 32 LSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRV--- 108 (235)
T ss_pred EEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccChHHHHHHHHhhhHHHHHHHHhccCc---
Confidence 445689999999999999999999999999999994432 31 11111 22234578887754444432
Q ss_pred hhhHHHHHHhccccCCcHHHHHHHHHcCC------ceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 197 GKFLEFASVHGNLYGTSVEAVEAVADAGK------RCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 197 ~~~~E~~~~~~~~~g~~~~~i~~~~~~g~------~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
..++.+.-...-.|.+.+..+.....-+ ..+..+.|..+....+|+......|+.+.++++||||++.+|..+
T Consensus 109 -~aLdVvaePll~~gv~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~N 187 (235)
T COG4778 109 -SALDVVAEPLLARGVPREVARAKAADLLTRLNLPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATN 187 (235)
T ss_pred -chHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchheehhhhhhhhccCceEEecCCcccccccc
Confidence 3333333222335566555544332211 112233444444445777888889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
+..+-+.+.+.+. ..+..|=+-||.+.--..+++++.+.
T Consensus 188 r~vVveli~e~Ka--------~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 188 RAVVVELIREAKA--------RGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred hHHHHHHHHHHHh--------cCceEEEeeccHHHHHHHhhheeecc
Confidence 9999999988653 24566767788655555677776655
|
|
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.7e-14 Score=123.77 Aligned_cols=158 Identities=16% Similarity=0.199 Sum_probs=103.9
Q ss_pred CCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcccccc---CCeeEEecChHHHHHHH
Q 015825 118 GAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEK---DGVHYHFTERSVMEKAI 194 (399)
Q Consensus 118 g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~---~~i~yvfq~~~lf~~~~ 194 (399)
+..+++..-++...+|+.+.+.||||+|||||+++|+|+.+|..| .+...+.+...... ....|+=-.+.+=..+
T Consensus 13 ~e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G-~v~~~~~~i~~~~~~~~~~l~yLGH~~giK~eL- 90 (209)
T COG4133 13 GERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAG-EVYWQGEPIQNVRESYHQALLYLGHQPGIKTEL- 90 (209)
T ss_pred CcceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCC-eEEecCCCCccchhhHHHHHHHhhccccccchh-
Confidence 445555555555679999999999999999999999999999999 66654433222110 1122221112221233
Q ss_pred hhhhhHHHHHHhccccCC-cHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 195 KDGKFLEFASVHGNLYGT-SVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g~-~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
++.||+.|....++. +...+.+++.. ++.-+.|+....+...++.++..+..+++.+++-+||||+.++|.....
T Consensus 91 ---Ta~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~~dlp~~~LSAGQqRRvAlArL~ls~~pLWiLDEP~taLDk~g~a 167 (209)
T COG4133 91 ---TALENLHFWQRFHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVA 167 (209)
T ss_pred ---hHHHHHHHHHHHhCCCchhhHHHHHHHcCcccccccchhhcchhHHHHHHHHHHHcCCCCceeecCcccccCHHHHH
Confidence 888999988777763 45555555544 4555555543333333445555666788888899999999999987766
Q ss_pred HHHHHHHH
Q 015825 273 QILKRLRN 280 (399)
Q Consensus 273 ~i~~~L~~ 280 (399)
.+-..+..
T Consensus 168 ~l~~l~~~ 175 (209)
T COG4133 168 LLTALMAA 175 (209)
T ss_pred HHHHHHHH
Confidence 66655554
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=99.39 E-value=2e-14 Score=131.82 Aligned_cols=157 Identities=14% Similarity=0.124 Sum_probs=92.0
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccc--------eeeecCCCc-cccccCCeeEEecChHHHHHHHhhhhhH
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGF--------SVSHTTRAP-RAMEKDGVHYHFTERSVMEKAIKDGKFL 200 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~--------~i~~ttr~~-~~~~~~~i~yvfq~~~lf~~~~~~~~~~ 200 (399)
..+| +++|+||||||||||+++|.++.++..+. .+.+..... .......++|+||++..+...
T Consensus 20 ~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~vfq~~~~~~~~------- 91 (197)
T cd03278 20 FPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRKPANFAEVTLTFDNSDGRYSI------- 91 (197)
T ss_pred cCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCCCCceEEEEEEEEcCCCceeE-------
Confidence 3467 99999999999999999999987654221 122211111 011123489999987654100
Q ss_pred HHHHHhccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEE----EcCCChHHHHHHHHhCCCCcHHHHHH
Q 015825 201 EFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIF----ICPPSMEELEERLRARGTETEDQILK 276 (399)
Q Consensus 201 E~~~~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~il----i~~P~lllLDEpl~~lD~~~~e~i~~ 276 (399)
. ....+.+.++. .-..+-.+..+....+++.....++ ..+|++.++|||++++|+...+.+.+
T Consensus 92 --------~---~~~~~~~~l~~--~~~~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~illlDEP~~~LD~~~~~~l~~ 158 (197)
T cd03278 92 --------I---SQGDVSEIIEA--PGKKVQRLSLLSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALDDANVERFAR 158 (197)
T ss_pred --------E---ehhhHHHHHhC--CCccccchhhcCHHHHHHHHHHHHHHHhccCCCCEEEEeCCcccCCHHHHHHHHH
Confidence 0 01122222222 0011111111122222333333333 35668999999999999999888888
Q ss_pred HHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 277 RLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 277 ~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
.++++.+ ..++++++|+++.+ ..+++++.+.
T Consensus 159 ~l~~~~~---------~~tiIiitH~~~~~-~~~d~v~~~~ 189 (197)
T cd03278 159 LLKEFSK---------ETQFIVITHRKGTM-EAADRLYGVT 189 (197)
T ss_pred HHHHhcc---------CCEEEEEECCHHHH-hhcceEEEEE
Confidence 8887532 23789999999764 5677776654
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=6.7e-14 Score=162.09 Aligned_cols=186 Identities=12% Similarity=0.092 Sum_probs=125.4
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
+..+.+....+|++++|+||||||||||+++|+|.+++..| .+.. ...++|++|++.+|. +++.|
T Consensus 675 iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G-~i~~---------~~~i~yv~Q~~~l~~-----~Tv~e 739 (1560)
T PTZ00243 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEG-RVWA---------ERSIAYVPQQAWIMN-----ATVRG 739 (1560)
T ss_pred eEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-EEEE---------CCeEEEEeCCCccCC-----CcHHH
Confidence 33334455679999999999999999999999999999888 5432 124899999976542 37888
Q ss_pred HHHHhccccCCcHHHHHHHHHc------------CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 202 FASVHGNLYGTSVEAVEAVADA------------GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~------------g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
++.+.... ..+.+.+.++. |....++-....+...++++...+.+++.+|++.+||||++++|+.
T Consensus 740 nI~~~~~~---~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~ 816 (1560)
T PTZ00243 740 NILFFDEE---DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAH 816 (1560)
T ss_pred HHHcCChh---hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHH
Confidence 88764321 11112221111 1110111001112223456666777999999999999999999998
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
+.+.+.+.+... .+ ...++|+++|+++.+ ..+++++.+.+|.+...++..++...+
T Consensus 817 ~~~~i~~~~~~~--~~------~~~TvIlvTH~~~~~-~~ad~ii~l~~G~i~~~G~~~~l~~~~ 872 (1560)
T PTZ00243 817 VGERVVEECFLG--AL------AGKTRVLATHQVHVV-PRADYVVALGDGRVEFSGSSADFMRTS 872 (1560)
T ss_pred HHHHHHHHHHHH--hh------CCCEEEEEeCCHHHH-HhCCEEEEEECCEEEEecCHHHHHhCh
Confidence 777665543211 11 124899999999876 579999999999998888877766543
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=9.4e-14 Score=127.22 Aligned_cols=188 Identities=14% Similarity=0.133 Sum_probs=119.6
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhcc--CCcccceeee-----cCCCccccccCCeeEEecChHHHHHHHhhhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEF--PSMFGFSVSH-----TTRAPRAMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~--~~~~g~~i~~-----ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
.+....+|++.+|+||||||||||.+.|+|.- ..+.| .+.. +.-++....+.|+..-||.|..++-. +
T Consensus 23 vnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G-~I~~~GedI~~l~~~ERAr~GifLafQ~P~ei~GV----~ 97 (251)
T COG0396 23 VNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEG-EILFDGEDILELSPDERARAGIFLAFQYPVEIPGV----T 97 (251)
T ss_pred cceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecc-eEEECCcccccCCHhHHHhcCCEEeecCCccCCCe----e
Confidence 33445689999999999999999999999974 44556 4433 22233344456788889998877654 4
Q ss_pred hHHHHHHhccc-cCCc--HHHHHHHHHcCCceEEecchhhHHH--------HHcCCcceeEEEEcCCChHHHHHHHHhCC
Q 015825 199 FLEFASVHGNL-YGTS--VEAVEAVADAGKRCILDIDVQGARS--------VRASPLDAIFIFICPPSMEELEERLRARG 267 (399)
Q Consensus 199 ~~E~~~~~~~~-~g~~--~~~i~~~~~~g~~~vldld~~g~~~--------l~~~~~~~~~ili~~P~lllLDEpl~~lD 267 (399)
+.+++....+. ++.. .......+++ ....+++++.-+.+ ..+.+...+.+++..|++.+||||=+++|
T Consensus 98 ~~~fLr~a~n~~~~~~~~~~~~~~~~~e-~~~~l~~~~~~l~R~vN~GFSGGEkKR~EilQ~~~lePkl~ILDE~DSGLD 176 (251)
T COG0396 98 NSDFLRAAMNARRGARGILPEFIKELKE-KAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLD 176 (251)
T ss_pred HHHHHHHHHHhhhccccccHHHHHHHHH-HHHHcCCCHHHhhcccCCCcCcchHHHHHHHHHHhcCCCEEEecCCCcCcc
Confidence 45554433222 1111 0111111111 11123333311111 12333445568889999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHH--HHhhcccCCeeeecCCCc
Q 015825 268 TETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENL--KKHLGLDGSIATNHQTSP 328 (399)
Q Consensus 268 ~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l--~~ii~~~~~~~~~~~~~~ 328 (399)
.+.-+.+.+-+..++.+ .+.++++||.. ..+..+ +.+.++-+|+++..|.++
T Consensus 177 Idalk~V~~~i~~lr~~--------~~~~liITHy~-rll~~i~pD~vhvl~~GrIv~sG~~e 230 (251)
T COG0396 177 IDALKIVAEGINALREE--------GRGVLIITHYQ-RLLDYIKPDKVHVLYDGRIVKSGDPE 230 (251)
T ss_pred HHHHHHHHHHHHHHhcC--------CCeEEEEecHH-HHHhhcCCCEEEEEECCEEEecCCHH
Confidence 98888888888876542 44788999964 444555 777888999999988873
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1e-13 Score=136.36 Aligned_cols=191 Identities=17% Similarity=0.170 Sum_probs=130.6
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
.++....|+.++++||||+||||+++.|.+.+.+..| .+....+..+ ...++-+|.++|+..+|.. +...
T Consensus 282 isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG-~I~id~qdir~vtq~slR~aIg~VPQDtvLFND-----ti~y 355 (497)
T COG5265 282 ISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG-SITIDGQDIRDVTQQSLRRAIGIVPQDTVLFND-----TIAY 355 (497)
T ss_pred ccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc-eEEEcchhHHHhHHHHHHHHhCcCcccceehhh-----hHHH
Confidence 3344679999999999999999999999999999888 5543322221 1122348899999887754 3445
Q ss_pred HHHHhccccCCcHHHHHHHHHcCC-ceEEecchhhHHHH-----------HcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 202 FASVHGNLYGTSVEAVEAVADAGK-RCILDIDVQGARSV-----------RASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~g~-~~vldld~~g~~~l-----------~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
+..|.+.- ...+++.++++... ..++..-|+|+... .+|+...+..++.+|+++++||.++++|..
T Consensus 356 ni~ygr~~--at~eev~aaa~~aqi~~fi~~lP~gy~t~VgerglklSggekqrvaiar~ilk~p~il~~deatsaldt~ 433 (497)
T COG5265 356 NIKYGRPD--ATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTH 433 (497)
T ss_pred HHhccCcc--ccHHHHHHHHHHhhhhHHHHhCchhhhcccchheeeccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhh
Confidence 55543321 12333333333221 11112223333221 245556666888899999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
++.++|..|+.... .-|.+++.|-+.... .+|+++++++|.++..|+..+++...
T Consensus 434 te~~iq~~l~~~~~---------~rttlviahrlsti~-~adeiivl~~g~i~erg~h~~ll~~~ 488 (497)
T COG5265 434 TEQAIQAALREVSA---------GRTTLVIAHRLSTII-DADEIIVLDNGRIVERGTHEELLAAG 488 (497)
T ss_pred HHHHHHHHHHHHhC---------CCeEEEEeehhhhcc-CCceEEEeeCCEEEecCcHHHHHHcC
Confidence 99999999998652 227788888775544 68899999999999999988777553
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.3e-13 Score=146.75 Aligned_cols=73 Identities=12% Similarity=-0.017 Sum_probs=62.0
Q ss_pred HcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 240 RASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 240 ~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
.++++..+.+++.+|++++||||++++|+.+.+.+.+.|+.+ ..++++++||.+.+...+++++.+.+|
T Consensus 349 ~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-----------~~tviivsHd~~~l~~~~d~i~~l~~g 417 (718)
T PLN03073 349 WRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW-----------PKTFIVVSHAREFLNTVVTDILHLHGQ 417 (718)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc-----------CCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 455566777999999999999999999999988888888763 128899999999988889999999999
Q ss_pred eeee
Q 015825 320 IATN 323 (399)
Q Consensus 320 ~~~~ 323 (399)
.+..
T Consensus 418 ~i~~ 421 (718)
T PLN03073 418 KLVT 421 (718)
T ss_pred EEEE
Confidence 8864
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.31 E-value=7.3e-13 Score=137.61 Aligned_cols=175 Identities=17% Similarity=0.113 Sum_probs=111.0
Q ss_pred eEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhh
Q 015825 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKF 199 (399)
Q Consensus 120 ~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~ 199 (399)
.++....+....+|..++|+||||+|||||+++|+|...+..| .+..... -.++|+.|+...+. ...++
T Consensus 335 ~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G-~v~~g~~-------v~igyf~Q~~~~l~---~~~t~ 403 (530)
T COG0488 335 RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSG-TVKVGET-------VKIGYFDQHRDELD---PDKTV 403 (530)
T ss_pred ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCc-eEEeCCc-------eEEEEEEehhhhcC---ccCcH
Confidence 3555555555669999999999999999999999999888777 4432111 12789999874432 12266
Q ss_pred HHHHHHhccccCCcHHHHHHHHHcCCceEEec--chhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHH
Q 015825 200 LEFASVHGNLYGTSVEAVEAVADAGKRCILDI--DVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (399)
Q Consensus 200 ~E~~~~~~~~~g~~~~~i~~~~~~g~~~vldl--d~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~ 277 (399)
++++.-... ......++..+......--+. ....+....+.++..+.+++.+|.+++|||||+.+|.++.+.+.+.
T Consensus 404 ~d~l~~~~~--~~~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~a 481 (530)
T COG0488 404 LEELSEGFP--DGDEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEA 481 (530)
T ss_pred HHHHHhhCc--cccHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHH
Confidence 666543221 111333444333211000000 0000111123334455588889999999999999999998888888
Q ss_pred HHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccC
Q 015825 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDG 318 (399)
Q Consensus 278 L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~ 318 (399)
|..+. -++|+|+||..-.-..+.+++...+
T Consensus 482 L~~f~-----------Gtvl~VSHDr~Fl~~va~~i~~~~~ 511 (530)
T COG0488 482 LLDFE-----------GTVLLVSHDRYFLDRVATRIWLVED 511 (530)
T ss_pred HHhCC-----------CeEEEEeCCHHHHHhhcceEEEEcC
Confidence 87642 2789999998777766777666654
|
|
| >COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.29 E-value=1.2e-10 Score=101.28 Aligned_cols=174 Identities=24% Similarity=0.296 Sum_probs=120.8
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCccccee--eecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSV--SHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNL 209 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i--~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~ 209 (399)
.|+.+.++||||+||.||+......+........ ...||+...... .....+...|..+..++-|.-.+...+.+
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrRvITRpa~ag~E---dH~avs~~eF~~~a~~g~FAlsWqAhGL~ 80 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRRVITRPADAGGE---DHDALSEAEFNTRAGQGAFALSWQAHGLS 80 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEEEecccCCCCcc---cccccCHHHHHHHhhcCceeEEehhcCcc
Confidence 5899999999999999999998877655432222 235665544311 23344566777776777777667778889
Q ss_pred cCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhcc
Q 015825 210 YGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGK 289 (399)
Q Consensus 210 ~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~ 289 (399)
||.+.+ +...+..|..++......-+-..++.+.+.+.+.++.+ .++|-+|+..|+.+++++|.++|.+....-
T Consensus 81 Ygip~e-Id~wl~~G~vvl~NgSRa~Lp~arrry~~Llvv~ita~-p~VLaqRL~~RGREs~eeI~aRL~R~a~~~---- 154 (192)
T COG3709 81 YGIPAE-IDLWLAAGDVVLVNGSRAVLPQARRRYPQLLVVCITAS-PEVLAQRLAERGRESREEILARLARAARYT---- 154 (192)
T ss_pred ccCchh-HHHHHhCCCEEEEeccHhhhHHHHHhhhcceeEEEecC-HHHHHHHHHHhccCCHHHHHHHHHhhcccc----
Confidence 999866 55567788888877655555566777776666555543 689999999999999999999998754221
Q ss_pred CCCcceEE-EeCC-CHHHHHHHHHHhhc
Q 015825 290 SSGIFDHI-LYND-KLEECYENLKKHLG 315 (399)
Q Consensus 290 ~~~~~t~V-iv~h-dleea~~~l~~ii~ 315 (399)
.+..+++ |.|. .++.+.+.+...+.
T Consensus 155 -~~~~dv~~idNsG~l~~ag~~ll~~l~ 181 (192)
T COG3709 155 -AGPGDVTTIDNSGELEDAGERLLALLH 181 (192)
T ss_pred -cCCCCeEEEcCCCcHHHHHHHHHHHHH
Confidence 1122443 4443 88888877766554
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.28 E-value=6.7e-13 Score=124.32 Aligned_cols=76 Identities=8% Similarity=0.052 Sum_probs=59.3
Q ss_pred HHcCCcceeEEEEcCC--ChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 239 VRASPLDAIFIFICPP--SMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 239 l~~~~~~~~~ili~~P--~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
..+++...+.+++.+| ++++||||++++|+.+...+.+.+.++.++ ..++++++|+++++ ..+++++.+
T Consensus 141 G~~qrv~laral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~--------g~tii~itH~~~~~-~~~d~i~~l 211 (226)
T cd03270 141 GEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDL--------GNTVLVVEHDEDTI-RAADHVIDI 211 (226)
T ss_pred HHHHHHHHHHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhC--------CCEEEEEEeCHHHH-HhCCEEEEe
Confidence 3455566666788877 599999999999999999999998876421 23889999999875 689999988
Q ss_pred ------cCCeeee
Q 015825 317 ------DGSIATN 323 (399)
Q Consensus 317 ------~~~~~~~ 323 (399)
.+|+++.
T Consensus 212 ~~~~~~~~G~iv~ 224 (226)
T cd03270 212 GPGAGVHGGEIVA 224 (226)
T ss_pred CCCccccCCEEEe
Confidence 5565554
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.6e-11 Score=106.10 Aligned_cols=114 Identities=27% Similarity=0.257 Sum_probs=74.8
Q ss_pred HHHHHHhCCeEEEeccC-cc-------CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceee-------ecCCCcccc
Q 015825 111 REQKKVVGAEVVAWSKG-VI-------GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS-------HTTRAPRAM 175 (399)
Q Consensus 111 ~~l~~~~g~~v~~~s~~-~~-------~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~-------~ttr~~~~~ 175 (399)
.+..+++||+++.+|.. .. .+++++++|+||||||||||+|.|.+.....++ .++ |||+..+..
T Consensus 5 ~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~k~~vl~G~SGvGKSSLiN~L~~~~~~~t~-~is~~~~rGkHTTt~~~l~ 83 (161)
T PF03193_consen 5 LEQYEKLGYPVFFISAKTGEGIEELKELLKGKTSVLLGQSGVGKSSLINALLPEAKQKTG-EISEKTGRGKHTTTHRELF 83 (161)
T ss_dssp HHHHHHTTSEEEE-BTTTTTTHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHTSS----S---------------SEEEE
T ss_pred HHHHHHcCCcEEEEeCCCCcCHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhhcchhhh-hhhcccCCCcccCCCeeEE
Confidence 34568899999999976 22 247899999999999999999999998766555 443 888888877
Q ss_pred ccCCeeEEecChHH-----H--HHHHhhhhhHHHHHHhccc-------cCCcHHHHHHHHHcCC
Q 015825 176 EKDGVHYHFTERSV-----M--EKAIKDGKFLEFASVHGNL-------YGTSVEAVEAVADAGK 225 (399)
Q Consensus 176 ~~~~i~yvfq~~~l-----f--~~~~~~~~~~E~~~~~~~~-------~g~~~~~i~~~~~~g~ 225 (399)
.....+++..+|.+ . ........|.|+..+...| ...+.|.+++++++|.
T Consensus 84 ~l~~g~~iIDTPGf~~~~l~~~~~~~l~~~F~e~~~~~~~CkF~~C~H~~Ep~CaV~~av~~g~ 147 (161)
T PF03193_consen 84 PLPDGGYIIDTPGFRSFGLWHIDPEELAQYFPEFRPLAGQCKFRDCTHIHEPGCAVKAAVENGE 147 (161)
T ss_dssp EETTSEEEECSHHHHT--GCCS-HHHHHHCSGGGHHHTTHSSSTTTTSSSSTT-HHHHHHHTTS
T ss_pred ecCCCcEEEECCCCCccccccCCHHHHHHHHHHhccccCCCCccCCCCCCCCCChHHHHHHCCC
Confidence 77556788666543 1 1112233677777776655 4577899999998875
|
RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B. |
| >PRK08356 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=6.4e-10 Score=101.74 Aligned_cols=176 Identities=19% Similarity=0.225 Sum_probs=105.9
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYG 211 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g 211 (399)
...+++|+||+||||||+.+.|.. .. +. .++++++..+..+..+..|.|.+...|..+.....++++..+.++.||
T Consensus 4 ~~~~i~~~G~~gsGK~t~a~~l~~-~g--~~-~is~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~~~yG 79 (195)
T PRK08356 4 EKMIVGVVGKIAAGKTTVAKFFEE-KG--FC-RVSCSDPLIDLLTHNVSDYSWVPEVPFKGEPTRENLIELGRYLKEKYG 79 (195)
T ss_pred CcEEEEEECCCCCCHHHHHHHHHH-CC--Cc-EEeCCCcccccccccccccccccHHHHhhccccccHHHHHHHHHHhcC
Confidence 346789999999999999999953 21 22 555666555555555567888876666665556688999999888898
Q ss_pred CcH--HHHHHHHHcCCceEEec--chhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC------cHHHHHHHHHHH
Q 015825 212 TSV--EAVEAVADAGKRCILDI--DVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE------TEDQILKRLRNA 281 (399)
Q Consensus 212 ~~~--~~i~~~~~~g~~~vldl--d~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~------~~e~i~~~L~~~ 281 (399)
.+. ..+.+.+.....+++|. .+.....++. ....++++..| ..++-+|+.+|+.. +.+++.++.. .
T Consensus 80 ~~~~~~~~~~~~~~~~~ividG~r~~~q~~~l~~--~~~~vi~l~~~-~~~~~~Rl~~R~~~~~~~~~~~e~~~~~~~-~ 155 (195)
T PRK08356 80 EDILIRLAVDKKRNCKNIAIDGVRSRGEVEAIKR--MGGKVIYVEAK-PEIRFERLRRRGAEKDKGIKSFEDFLKFDE-W 155 (195)
T ss_pred cHHHHHHHHHHhccCCeEEEcCcCCHHHHHHHHh--cCCEEEEEECC-HHHHHHHHHhcCCccccccccHHHHHHHHH-H
Confidence 752 11222222223334442 1111112222 12344555544 68889999988755 4444433332 1
Q ss_pred HHHH-HhccCCCcceEEEeC-CCHHHHHHHHHHhhc
Q 015825 282 KEEI-KQGKSSGIFDHILYN-DKLEECYENLKKHLG 315 (399)
Q Consensus 282 ~~~l-~~~~~~~~~t~Viv~-hdleea~~~l~~ii~ 315 (399)
+..+ ...+....+|++|+| .+++++...+.+++.
T Consensus 156 ~~~l~~~~~~~~~aD~vI~N~~~~e~~~~~i~~~~~ 191 (195)
T PRK08356 156 EEKLYHTTKLKDKADFVIVNEGTLEELRKKVEEILR 191 (195)
T ss_pred HHHhhhhhhHHHhCcEEEECCCCHHHHHHHHHHHHH
Confidence 1111 111123468999998 599999999988764
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.2e-11 Score=132.91 Aligned_cols=186 Identities=15% Similarity=0.102 Sum_probs=122.4
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCC--cccceeeecCCCcc-ccccCCeeEEecChHHHHHHHhhhhhHHHHHHh
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPS--MFGFSVSHTTRAPR-AMEKDGVHYHFTERSVMEKAIKDGKFLEFASVH 206 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~--~~g~~i~~ttr~~~-~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~ 206 (399)
..+|..++|+|+||||||||++.|+|.... .+| ++....++.. ..-.+-.||+-|+.-..+.. |+.|-+.|.
T Consensus 814 ~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~G-di~i~G~p~~q~tF~R~~GYvqQ~DiH~~~~----TVrESL~fS 888 (1391)
T KOG0065|consen 814 FKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEG-DILISGFPKDQETFARVSGYVEQQDIHSPEL----TVRESLRFS 888 (1391)
T ss_pred ecCCceeehhcCCCCchHHHHHHHhcCcccceEEe-EEEECCeeCchhhhccccceeecccccCccc----chHHHHHHH
Confidence 458999999999999999999999997432 344 4444444333 22234479998886555665 888988887
Q ss_pred cccc---CCcHHHHHHHHHc-----CC----ceEEecchhhHHHHHcCCcceeEEEEcCC-ChHHHHHHHHhCCCCcHHH
Q 015825 207 GNLY---GTSVEAVEAVADA-----GK----RCILDIDVQGARSVRASPLDAIFIFICPP-SMEELEERLRARGTETEDQ 273 (399)
Q Consensus 207 ~~~~---g~~~~~i~~~~~~-----g~----~~vldld~~g~~~l~~~~~~~~~ili~~P-~lllLDEpl~~lD~~~~e~ 273 (399)
..++ ..+.++..+-+++ ++ ..++...-.|+.--++.++...+=|+.+| .++.||||+++||..+...
T Consensus 889 A~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA~P~~ilFLDEPTSGLDsqaA~~ 968 (1391)
T KOG0065|consen 889 AALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVANPSSILFLDEPTSGLDSQAAAI 968 (1391)
T ss_pred HHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEecCCceeEEecCCCCCccHHHHHH
Confidence 7654 2222222222221 11 11111111233333567777888899999 8899999999999999889
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCC-CHHHHHHHHHHhhccc-CCeeeecCCCc
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKKHLGLD-GSIATNHQTSP 328 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~h-dleea~~~l~~ii~~~-~~~~~~~~~~~ 328 (399)
+.+.++++... ++ +++..-| .-...++.-|+++.+. +|+.+..|+..
T Consensus 969 i~~~lrkla~t-Gq-------tIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG 1017 (1391)
T KOG0065|consen 969 VMRFLRKLADT-GQ-------TILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLG 1017 (1391)
T ss_pred HHHHHHHHHhc-CC-------eEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCcc
Confidence 99999887642 11 6776667 4445667788888776 55777666543
|
|
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.17 E-value=4.2e-11 Score=105.65 Aligned_cols=192 Identities=12% Similarity=0.134 Sum_probs=112.2
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccc----cCCeeEEecChHHHHHHHhhhhhHHHHH
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAME----KDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~----~~~i~yvfq~~~lf~~~~~~~~~~E~~~ 204 (399)
+...|+++=++||||||||||+-.++|+.+. .| +|.....+....+ .+..+|..|.......| -+..++.
T Consensus 21 qv~aGe~~HliGPNGaGKSTLLA~lAGm~~~-sG-si~~~G~~l~~~~~~eLArhRAYLsQqq~p~f~m----pV~~YL~ 94 (248)
T COG4138 21 EVRAGEILHLVGPNGAGKSTLLARMAGMTSG-SG-SIQFAGQPLEAWSATELARHRAYLSQQQTPPFAM----PVWHYLT 94 (248)
T ss_pred ccccceEEEEECCCCccHHHHHHHHhCCCCC-Cc-eEEECCcchhHHhHhHHHHHHHHHhhccCCcchh----hhhhhhh
Confidence 3458999999999999999999999999864 55 4443222211110 01134554442211111 2222222
Q ss_pred HhccccCCcHHHHHHHHHcCCceEEecchhhHHHHH---c---CCcceeEEEE-cCC------ChHHHHHHHHhCCCCcH
Q 015825 205 VHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVR---A---SPLDAIFIFI-CPP------SMEELEERLRARGTETE 271 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~---~---~~~~~~~ili-~~P------~lllLDEpl~~lD~~~~ 271 (399)
+. .+...+...++.-. -.+.++.+--+.+. . +++..+.+++ ..| .++++|||.+.+|...+
T Consensus 95 L~-----qP~~~~a~~i~~i~-~~L~l~DKL~Rs~~qLSGGEWQRVRLAav~LQv~Pd~NP~~~LLllDEP~~~LDvAQ~ 168 (248)
T COG4138 95 LH-----QPDKTRTELLNDVA-GALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQ 168 (248)
T ss_pred hc-----CchHHHHHHHHHHH-hhhcccchhhhhhhhcCcccceeeEEeEEEEEecCCCCccceeEEecCCCcchhHHHH
Confidence 21 12222222222100 01112222222221 1 2233333332 233 36799999999997666
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
..+.+.+.++.. ...++|+.+||+..++..++++..+..|.....|+.+++++.+....++
T Consensus 169 ~aLdrll~~~c~--------~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~~vL~q~f 229 (248)
T COG4138 169 SALDRLLSALCQ--------QGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPPVLAQAY 229 (248)
T ss_pred HHHHHHHHHHHh--------CCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcChHHHHHHh
Confidence 666555555442 3458999999999999999999999999999999988888877555444
|
|
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.7e-12 Score=119.79 Aligned_cols=163 Identities=17% Similarity=0.135 Sum_probs=90.5
Q ss_pred EEEEEcCCCCCHHHHHhhhh----hccCCcccceeeecCCCcc-ccccCCeeEEecChHHHHHHHhh--hhhHHHHHHhc
Q 015825 135 PVVITGPSGVGKGTLISMLM----KEFPSMFGFSVSHTTRAPR-AMEKDGVHYHFTERSVMEKAIKD--GKFLEFASVHG 207 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~----~~~~~~~g~~i~~ttr~~~-~~~~~~i~yvfq~~~lf~~~~~~--~~~~E~~~~~~ 207 (399)
+++|+||||+|||||+++|. |..++..+ .+.+...... ......++++|++.. ...+... -++.+++.+
T Consensus 24 ~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~-~~~~~~~~i~~~~~~~~v~~~f~~~~-~~~~~v~r~~~~~~~~~~-- 99 (204)
T cd03240 24 LTLIVGQNGAGKTTIIEALKYALTGELPPNSK-GGAHDPKLIREGEVRAQVKLAFENAN-GKKYTITRSLAILENVIF-- 99 (204)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCcccc-cccchHHHHhCCCCcEEEEEEEEeCC-CCEEEEEEEhhHhhceee--
Confidence 99999999999999999995 66655443 1111111000 111224778888752 1111000 033333322
Q ss_pred cccCCcHHHHHHHHHcCCceEEecchhhHHH-HH-cCCcceeEEEEcCCChHHHHHHHHhCCCCcHH-HHHHHHHHHHHH
Q 015825 208 NLYGTSVEAVEAVADAGKRCILDIDVQGARS-VR-ASPLDAIFIFICPPSMEELEERLRARGTETED-QILKRLRNAKEE 284 (399)
Q Consensus 208 ~~~g~~~~~i~~~~~~g~~~vldld~~g~~~-l~-~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e-~i~~~L~~~~~~ 284 (399)
.+...+...+..... .+.. |.++ +. ..+...+.+++.+|++.++|||++++|+...+ .+.+.+.++.++
T Consensus 100 ----~~~~~~~~~~~~~~~---~LS~-G~~~~~~la~rlala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~ 171 (204)
T cd03240 100 ----CHQGESNWPLLDMRG---RCSG-GEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQ 171 (204)
T ss_pred ----echHHHHHHHhcCcc---ccCc-cHHHHHHHHHHHHHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhc
Confidence 122333333322110 1100 1110 00 00123334778899999999999999999888 888888876432
Q ss_pred HHhccCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 285 IKQGKSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 285 l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
. ..++++++|+++.. ..+++++.+.
T Consensus 172 ~-------~~~iiiitH~~~~~-~~~d~i~~l~ 196 (204)
T cd03240 172 K-------NFQLIVITHDEELV-DAADHIYRVE 196 (204)
T ss_pred c-------CCEEEEEEecHHHH-hhCCEEEEEe
Confidence 1 23788999998754 5677766654
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.7e-12 Score=119.37 Aligned_cols=77 Identities=12% Similarity=0.064 Sum_probs=59.4
Q ss_pred cCCcceeEEEEcC---CChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc-
Q 015825 241 ASPLDAIFIFICP---PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL- 316 (399)
Q Consensus 241 ~~~~~~~~ili~~---P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~- 316 (399)
+++...+.+++.+ |++.+||||++++|+...+.+.+.+.++.++ ..++++++|+++.+ ..+++++.+
T Consensus 175 ~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~--------g~tvIiitH~~~~i-~~aD~ii~Lg 245 (261)
T cd03271 175 AQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDK--------GNTVVVIEHNLDVI-KCADWIIDLG 245 (261)
T ss_pred HHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhC--------CCEEEEEeCCHHHH-HhCCEEEEec
Confidence 4444455566664 7899999999999999999998888876432 23889999999876 468998888
Q ss_pred -----cCCeeeecCC
Q 015825 317 -----DGSIATNHQT 326 (399)
Q Consensus 317 -----~~~~~~~~~~ 326 (399)
.+|+++..++
T Consensus 246 p~~g~~~G~iv~~Gt 260 (261)
T cd03271 246 PEGGDGGGQVVASGT 260 (261)
T ss_pred CCcCCCCCEEEEeCC
Confidence 6777777665
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.7e-12 Score=120.45 Aligned_cols=59 Identities=8% Similarity=-0.103 Sum_probs=48.1
Q ss_pred CCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 253 PPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 253 ~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
+|+++++|||++++|+.+.+.+.+.+.++.++ ..++++++|+++.+...+++++.+.+|
T Consensus 151 ~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~--------~~tii~itH~~~~~~~~~~~i~~~~~~ 209 (213)
T cd03279 151 RLEALFIDEGFGTLDPEALEAVATALELIRTE--------NRMVGVISHVEELKERIPQRLEVIKTP 209 (213)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhC--------CCEEEEEECchHHHHhhCcEEEEEecC
Confidence 57899999999999999999998888876432 238899999998888777777776655
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-12 Score=112.39 Aligned_cols=121 Identities=19% Similarity=0.160 Sum_probs=73.1
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
..+|++++|+||||||||||+++|+|..++..| .+....... .......++|++++..+++.+ ++.++.
T Consensus 8 i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G-~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~----tv~~~~-- 80 (137)
T PF00005_consen 8 IKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSG-SILINGKDISDIDIEELRRRIGYVPQDPQLFPGL----TVRENE-- 80 (137)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHTTSSHESEE-EEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTS----BHHHHH--
T ss_pred EcCCCEEEEEccCCCccccceeeeccccccccc-cccccccccccccccccccccccccccccccccc----cccccc--
Confidence 458999999999999999999999999999888 554322111 122334689999997666554 444441
Q ss_pred hccccCCcHHHHHHHHHcC-----CceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHH
Q 015825 206 HGNLYGTSVEAVEAVADAG-----KRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (399)
Q Consensus 206 ~~~~~g~~~~~i~~~~~~g-----~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~ 264 (399)
....+...++.- ....++-....+....+++...+.+++.+|++.+||||++
T Consensus 81 -------~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 81 -------SDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp -------HHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred -------ccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 111122222110 0111111112222233445555668888999999999974
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.1e-11 Score=136.79 Aligned_cols=189 Identities=13% Similarity=0.086 Sum_probs=134.3
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecC---CCccc-cccCCeeEEecChHHHHHHHhhhhhHHHHH
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTT---RAPRA-MEKDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~tt---r~~~~-~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~ 204 (399)
...+|+.+|++|..|||||||+++|-++..+..| .|.... ..... ..+..++.+||+|.+|. ||+..|+.
T Consensus 1162 ~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G-~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFs-----GTvR~NLD 1235 (1381)
T KOG0054|consen 1162 TIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEG-EILIDGVDISKIGLHDLRSRLSIIPQDPVLFS-----GTVRFNLD 1235 (1381)
T ss_pred EEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCC-eEEEcCeecccccHHHHHhcCeeeCCCCceec-----CccccccC
Confidence 3458999999999999999999999999999888 554322 12111 12345899999998774 36666654
Q ss_pred HhccccCCcHHHHHHHHHc------------CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 205 VHGNLYGTSVEAVEAVADA------------GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~~~~~------------g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
-...+ +.+++-++++. ++...+.-.-......++|-+..+.+++...++++|||.|++.|+.|..
T Consensus 1236 Pf~e~---sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~ 1312 (1381)
T KOG0054|consen 1236 PFDEY---SDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDA 1312 (1381)
T ss_pred ccccc---CHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHH
Confidence 33322 33334333332 1111110000112223455566667999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcc
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPAD 336 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~ 336 (399)
-||+.|++. + +.||++-+-|.+..++ .+|+++++++|+++..++|.+++..+..
T Consensus 1313 lIQ~tIR~~---F------~dcTVltIAHRl~TVm-d~DrVlVld~G~v~EfdsP~~Ll~~~~S 1366 (1381)
T KOG0054|consen 1313 LIQKTIREE---F------KDCTVLTIAHRLNTVM-DSDRVLVLDAGRVVEFDSPAELLSDKDS 1366 (1381)
T ss_pred HHHHHHHHH---h------cCCeEEEEeeccchhh-hcCeEEEeeCCeEeecCChHHHHhCCcc
Confidence 999999872 2 4689999999987766 6999999999999999999999987653
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.08 E-value=4.5e-12 Score=119.56 Aligned_cols=66 Identities=17% Similarity=0.153 Sum_probs=46.5
Q ss_pred CCcceeEEEE----cCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 242 SPLDAIFIFI----CPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 242 ~~~~~~~ili----~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
++...+.+++ .+|+++++|||++++|+.+.+.+.+.+.++.+ ..++++++|.. ++...+++++.+.
T Consensus 165 ~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~---------~~~ii~~~h~~-~~~~~~d~i~~l~ 234 (243)
T cd03272 165 SLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSD---------GAQFITTTFRP-ELLEVADKFYGVK 234 (243)
T ss_pred HHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhC---------CCEEEEEecCH-HHHhhCCEEEEEE
Confidence 3444444553 46889999999999999999999888877532 12556667764 5677788876654
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.8e-12 Score=120.99 Aligned_cols=173 Identities=15% Similarity=0.110 Sum_probs=94.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCC-C-----cc-ccccCCeeEEecChHH---------HHHHH
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTR-A-----PR-AMEKDGVHYHFTERSV---------MEKAI 194 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr-~-----~~-~~~~~~i~yvfq~~~l---------f~~~~ 194 (399)
+...+.+|+||||||||||+++|++.+.+..+..+..... . .. ......++++||++.. .+.+
T Consensus 23 ~~~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~l- 101 (251)
T cd03273 23 FDPQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKASVTIVFDNSDKSQSPIGFENYPEI- 101 (251)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEEEEEEEEEcCCcccCcccccCCceE-
Confidence 4577999999999999999999999886543322221111 0 00 1112247888987421 1222
Q ss_pred hhhhhHHHHHHhc--cc-c-C--CcHHHHHHHHHcC-Cc----eEE----------------ecchhhHHHHHcCCccee
Q 015825 195 KDGKFLEFASVHG--NL-Y-G--TSVEAVEAVADAG-KR----CIL----------------DIDVQGARSVRASPLDAI 247 (399)
Q Consensus 195 ~~~~~~E~~~~~~--~~-~-g--~~~~~i~~~~~~g-~~----~vl----------------dld~~g~~~l~~~~~~~~ 247 (399)
++.+.+.+.. .. + + .....+.+.++.- .. .++ +..+..+....+++...+
T Consensus 102 ---tV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la 178 (251)
T cd03273 102 ---TVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALS 178 (251)
T ss_pred ---EEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHH
Confidence 2222221111 01 1 1 1223444444331 11 000 000001111122223333
Q ss_pred EEEE----cCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 248 FIFI----CPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 248 ~ili----~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
.+++ .+|++.++|||++++|+...+.+.+.++++.+ ..++|+++|+ .+.++.+++++...
T Consensus 179 ~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~---------g~~ii~iSH~-~~~~~~~d~v~~~~ 242 (251)
T cd03273 179 LILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFK---------GSQFIVVSLK-EGMFNNANVLFRTR 242 (251)
T ss_pred HHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcC---------CCEEEEEECC-HHHHHhCCEEEEEE
Confidence 3333 57799999999999999988888888877531 2378999999 57777788766543
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.07 E-value=6e-11 Score=133.11 Aligned_cols=176 Identities=17% Similarity=0.181 Sum_probs=124.1
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcc
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGN 208 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~ 208 (399)
...+|+.++++||-|||||+|+.+|.|..+...| .+.... .++|++|.+..+ ++++.||+.|+..
T Consensus 543 ~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG-~v~v~g---------siaYv~Q~pWI~-----ngTvreNILFG~~ 607 (1381)
T KOG0054|consen 543 EIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSG-SVAVNG---------SVAYVPQQPWIQ-----NGTVRENILFGSP 607 (1381)
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcCcccccc-eEEEcC---------eEEEeccccHhh-----CCcHHHhhhcCcc
Confidence 3468999999999999999999999999999888 443211 279999997544 4589999987643
Q ss_pred ccCCcHHHHHHHHHc------------CCceEEecchhh--HHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHH
Q 015825 209 LYGTSVEAVEAVADA------------GKRCILDIDVQG--ARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQI 274 (399)
Q Consensus 209 ~~g~~~~~i~~~~~~------------g~~~vldld~~g--~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i 274 (399)
+ ..+.+++.++. |....+ .-.| +...++++...+.++..+.++-+||+|+++.|......+
T Consensus 608 ~---d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeI--GErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~i 682 (1381)
T KOG0054|consen 608 Y---DEERYDKVIKACALKKDLEILPFGDLTEI--GERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHI 682 (1381)
T ss_pred c---cHHHHHHHHHHccCHhHHhhcCCCCccee--cCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHH
Confidence 2 33444444432 111111 0011 122356667777788899999999999999998776555
Q ss_pred HHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 275 LKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 275 ~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
.+..-. ..+. .-|+|++||. -+-+..++.++.+++|++.+.|+..++...
T Consensus 683 f~~ci~--~~L~------~KT~ILVTHq-l~~L~~ad~Iivl~~G~I~~~Gty~el~~~ 732 (1381)
T KOG0054|consen 683 FEECIR--GLLR------GKTVILVTHQ-LQFLPHADQIIVLKDGKIVESGTYEELLKS 732 (1381)
T ss_pred HHHHHH--hhhc------CCEEEEEeCc-hhhhhhCCEEEEecCCeEecccCHHHHHhc
Confidence 444331 1121 1289999994 467788999999999999999998887744
|
|
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.06 E-value=9.2e-11 Score=106.24 Aligned_cols=205 Identities=14% Similarity=0.110 Sum_probs=128.3
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccc--------eee---ecCCCccccccCCeeEEecChHH-H-HHHHh
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGF--------SVS---HTTRAPRAMEKDGVHYHFTERSV-M-EKAIK 195 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~--------~i~---~ttr~~~~~~~~~i~yvfq~~~l-f-~~~~~ 195 (399)
....|++-+|+|.||||||-+.+.|++.....+-. ++- .+.+..+..--..++++||++.. . +....
T Consensus 29 tlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~RRk~ig~~isMIFQeP~sCLDPS~~i 108 (330)
T COG4170 29 TLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERV 108 (330)
T ss_pred eeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHhhhhhccchhhhhcCchhhcChHHHH
Confidence 34589999999999999999999999987642110 111 12222222222357899998642 1 11111
Q ss_pred hhhhHHH---HHHhccc---cCCcHHHHHHHHHc-CCceEEec---chhhHHHHHcCCcceeEEEEcCCChHHHHHHHHh
Q 015825 196 DGKFLEF---ASVHGNL---YGTSVEAVEAVADA-GKRCILDI---DVQGARSVRASPLDAIFIFICPPSMEELEERLRA 265 (399)
Q Consensus 196 ~~~~~E~---~~~~~~~---~g~~~~~i~~~~~~-g~~~vldl---d~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~ 265 (399)
..+.+++ ..|.++. ++..+...-+.+.+ |...--|+ -|..+.....|++..+.+++..|.+++.|||+++
T Consensus 109 G~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~ 188 (330)
T COG4170 109 GRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNS 188 (330)
T ss_pred HHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhccCcceeeeeehhhccCCceEeccCCCcc
Confidence 1133333 3444443 33333333333322 11110000 0111111124455666788999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhh
Q 015825 266 RGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVS 340 (399)
Q Consensus 266 lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~ 340 (399)
.++.++.++.+.|.++.+. ...+++++.||+...-+.++++-++.-|..+.....++++..|......
T Consensus 189 ~e~~Tq~QifRLLs~mNQn-------~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ESa~~e~l~~~PhHPYTq 256 (330)
T COG4170 189 MEPTTQAQIFRLLSRLNQN-------SNTTILLISHDLQMISQWADKINVLYCGQTVESAPSEELVTMPHHPYTQ 256 (330)
T ss_pred cCccHHHHHHHHHHHhhcc-------CCceEEEEcccHHHHHHHhhheEEEEecccccccchhHHhcCCCCchHH
Confidence 9999999999998886543 2447779999999999999999999988777777677788877655433
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.2e-12 Score=121.33 Aligned_cols=56 Identities=11% Similarity=0.150 Sum_probs=44.2
Q ss_pred cCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 252 CPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 252 ~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
.+|+++++|||++++|+.+...+++.++++.. ..++++++|+ +++...+++++.+.
T Consensus 148 ~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~---------~~~~iivs~~-~~~~~~~d~v~~~~ 203 (212)
T cd03274 148 KPTPLYVMDEIDAALDFRNVSIVANYIKERTK---------NAQFIVISLR-NNMFELADRLVGIY 203 (212)
T ss_pred CCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcC---------CCEEEEEECc-HHHHHhCCEEEEEE
Confidence 36789999999999999999999888887531 2377888898 46667788877665
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-10 Score=106.55 Aligned_cols=128 Identities=13% Similarity=0.135 Sum_probs=74.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCC-cccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPS-MFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNL 209 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~-~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~ 209 (399)
..|++++|+||||||||||+++|.+.... ..|..+.. ..++||...+|..+ +..+++......
T Consensus 23 ~~g~~~~ltGpNg~GKSTllr~i~~~~~l~~~G~~v~a------------~~~~~q~~~l~~~~----~~~d~l~~~~s~ 86 (199)
T cd03283 23 EKKNGILITGSNMSGKSTFLRTIGVNVILAQAGAPVCA------------SSFELPPVKIFTSI----RVSDDLRDGISY 86 (199)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHHHHcCCEEec------------CccCcccceEEEec----cchhccccccCh
Confidence 35799999999999999999999875421 23322221 12444533344443 444544332211
Q ss_pred cCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHH-HHHHHHHHHHhc
Q 015825 210 YGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILK-RLRNAKEEIKQG 288 (399)
Q Consensus 210 ~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~-~L~~~~~~l~~~ 288 (399)
+......+.+.++. + . ...|++.++|||++++|+.....+.. .+..+.+
T Consensus 87 ~~~e~~~~~~iL~~---------------~---~-------~~~p~llllDEp~~glD~~~~~~l~~~ll~~l~~----- 136 (199)
T cd03283 87 FYAELRRLKEIVEK---------------A---K-------KGEPVLFLLDEIFKGTNSRERQAASAAVLKFLKN----- 136 (199)
T ss_pred HHHHHHHHHHHHHh---------------c---c-------CCCCeEEEEecccCCCCHHHHHHHHHHHHHHHHH-----
Confidence 10000111111110 0 0 16788999999999999887765543 4554431
Q ss_pred cCCCcceEEEeCCCHHHHH
Q 015825 289 KSSGIFDHILYNDKLEECY 307 (399)
Q Consensus 289 ~~~~~~t~Viv~hdleea~ 307 (399)
...++++++|+++.+.
T Consensus 137 ---~~~tiiivTH~~~~~~ 152 (199)
T cd03283 137 ---KNTIGIISTHDLELAD 152 (199)
T ss_pred ---CCCEEEEEcCcHHHHH
Confidence 1347889999988764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.6e-10 Score=115.62 Aligned_cols=167 Identities=14% Similarity=0.174 Sum_probs=95.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~ 210 (399)
..+..++++||||||||||++.+.+.+.|..|....|.-.. ++++-|+... .+....+..||.. ..+
T Consensus 414 d~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~~--------~~~y~Qh~~e--~ldl~~s~le~~~---~~~ 480 (614)
T KOG0927|consen 414 DLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHNK--------LPRYNQHLAE--QLDLDKSSLEFMM---PKF 480 (614)
T ss_pred CcccceeEecCCCCchhhhHHHHhhcccccccccccccccc--------chhhhhhhHh--hcCcchhHHHHHH---Hhc
Confidence 46788999999999999999999999999999544442211 2232232211 0001112333321 111
Q ss_pred C--CcHHHHHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 015825 211 G--TSVEAVEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIK 286 (399)
Q Consensus 211 g--~~~~~i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~ 286 (399)
. ...+.++.++.+ |+. ...+.....+....+.++..+...+..|.+++|||||+++|.++.+.+.+.|.++.
T Consensus 481 ~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~---- 556 (614)
T KOG0927|consen 481 PDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFP---- 556 (614)
T ss_pred cccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccC----
Confidence 1 334444444432 111 00001111111122333344446677899999999999999988777766666531
Q ss_pred hccCCCcceEEEeCCCHHHHHHHHHHhhcccCCee
Q 015825 287 QGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIA 321 (399)
Q Consensus 287 ~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~ 321 (399)
-.+|+++||.--.-+.++++..-.++.+
T Consensus 557 -------Ggvv~vSHDfrlI~qVaeEi~~c~~~~~ 584 (614)
T KOG0927|consen 557 -------GGVVLVSHDFRLISQVAEEIWVCENGTV 584 (614)
T ss_pred -------CceeeeechhhHHHHHHHHhHhhccCce
Confidence 1678999988766666677665555433
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.94 E-value=2.2e-10 Score=116.09 Aligned_cols=72 Identities=10% Similarity=-0.045 Sum_probs=57.4
Q ss_pred CcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeee
Q 015825 243 PLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIAT 322 (399)
Q Consensus 243 ~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~ 322 (399)
+...+.+|+..|++++||||+++||.++...+.+.|.++. ..+.|++.|+.+..-..|.+|+.+.....+
T Consensus 229 R~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d----------~~~lVi~sh~QDfln~vCT~Ii~l~~kkl~ 298 (614)
T KOG0927|consen 229 RAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYD----------RIILVIVSHSQDFLNGVCTNIIHLDNKKLI 298 (614)
T ss_pred HHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhcc----------CceEEEEecchhhhhhHhhhhheeccccee
Confidence 3445568999999999999999999988777777776632 116789999999998999999999877655
Q ss_pred ec
Q 015825 323 NH 324 (399)
Q Consensus 323 ~~ 324 (399)
..
T Consensus 299 ~y 300 (614)
T KOG0927|consen 299 YY 300 (614)
T ss_pred ee
Confidence 43
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.93 E-value=1.4e-10 Score=116.86 Aligned_cols=66 Identities=9% Similarity=-0.003 Sum_probs=46.5
Q ss_pred HcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 240 RASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 240 ~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
++.++..+.++++.|++++||||++.||..+...+...|... ..|.++|+||-.-.=..+..||-.
T Consensus 203 WrMrlaLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~-----------~~T~liVSHDr~FLn~V~tdIIH~ 268 (582)
T KOG0062|consen 203 WRMRLALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW-----------KITSLIVSHDRNFLNTVCTDIIHL 268 (582)
T ss_pred hhhHHHHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC-----------CceEEEEeccHHHHHHHHHHHHHH
Confidence 344556667999999999999999999987776666666552 238899999854433334444433
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.8e-10 Score=105.68 Aligned_cols=61 Identities=7% Similarity=-0.072 Sum_probs=46.2
Q ss_pred EcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 251 ICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 251 i~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
+.+|++.++|||++++|..+...+.+.|.++..+- .+..++++++|+++++... +++.++.
T Consensus 129 ~~~p~illlDEP~~glD~~~~~~~~~~l~~~~~~~-----~~~~~iii~th~~~~i~~~-d~v~~~~ 189 (198)
T cd03276 129 VMESPFRCLDEFDVFMDMVNRKISTDLLVKEAKKQ-----PGRQFIFITPQDISGLASS-DDVKVFR 189 (198)
T ss_pred ccCCCEEEecCcccccCHHHHHHHHHHHHHHHhcC-----CCcEEEEEECCcccccccc-cceeEEE
Confidence 57999999999999999999989988888753210 0224678899999888754 6655554
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.87 E-value=4.6e-10 Score=110.10 Aligned_cols=174 Identities=12% Similarity=0.127 Sum_probs=105.9
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccc----cCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAME----KDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~----~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
..+|+++.++|.|||||||+++.|.|++.|..| .|.....+..... +.-.+-+|.++.+|+.+.....
T Consensus 346 ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG-~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~------- 417 (546)
T COG4615 346 IKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSG-EILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEG------- 417 (546)
T ss_pred EecCcEEEEECCCCCcHHHHHHHHhcccCCCCC-ceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCcc-------
Confidence 459999999999999999999999999999999 6655444332211 1112334555555554421111
Q ss_pred hccccCCcHHHHHHHHHc----CCceEEec--chhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHH
Q 015825 206 HGNLYGTSVEAVEAVADA----GKRCILDI--DVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLR 279 (399)
Q Consensus 206 ~~~~~g~~~~~i~~~~~~----g~~~vldl--d~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~ 279 (399)
. -+...+...++. .+..+.|- .+-.....++.+...+.+++-+-++.++||=-...||.-+..+.+.+-
T Consensus 418 ----~-as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lL 492 (546)
T COG4615 418 ----K-ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLL 492 (546)
T ss_pred ----C-CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHh
Confidence 0 111112111110 11111111 010111223344455567777778899999988899888888877766
Q ss_pred HHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeec
Q 015825 280 NAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNH 324 (399)
Q Consensus 280 ~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~ 324 (399)
-.-++++. |++.++|| |.=+..+||++.+.+|+++..
T Consensus 493 p~LK~qGK-------TI~aIsHD-d~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 493 PLLKEQGK-------TIFAISHD-DHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred HHHHHhCC-------eEEEEecC-chhhhhHHHHHHHhcCceeec
Confidence 55555443 88889997 234556899999999987753
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.1e-10 Score=110.66 Aligned_cols=57 Identities=18% Similarity=0.207 Sum_probs=45.3
Q ss_pred CCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccC
Q 015825 253 PPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDG 318 (399)
Q Consensus 253 ~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~ 318 (399)
+|++.++|||++++|+.....+.+.+.++.++ ..++++++|+. +.+..+++++.+.+
T Consensus 177 ~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~--------g~~vi~isH~~-~~~~~~d~i~~~~~ 233 (247)
T cd03275 177 PAPFFVLDEVDAALDNTNVGKVASYIREQAGP--------NFQFIVISLKE-EFFSKADALVGVYR 233 (247)
T ss_pred CCCEEEEecccccCCHHHHHHHHHHHHHhccC--------CcEEEEEECCH-HHHhhCCeEEEEEe
Confidence 58899999999999999988888888875421 34789999995 45677888777764
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.5e-10 Score=112.43 Aligned_cols=183 Identities=16% Similarity=0.148 Sum_probs=121.4
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCC-----CccccccCCeeEEecChH---HHHHHHhhhhhHH
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTR-----APRAMEKDGVHYHFTERS---VMEKAIKDGKFLE 201 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr-----~~~~~~~~~i~yvfq~~~---lf~~~~~~~~~~E 201 (399)
..+|++++|.|--|+|+|-+++.|.|..++..| .+....+ .++..-..+++|++.+.. ++..+ .+.+
T Consensus 282 vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G-~i~l~G~~v~~~sp~~Ai~~Gi~~v~EDRk~~Gl~l~~----sI~~ 356 (500)
T COG1129 282 VRAGEILGIAGLVGAGRTELARALFGARPASSG-EILLDGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDM----SIAE 356 (500)
T ss_pred EeCCcEEEEeccccCCHHHHHHHHhCCCcCCCc-eEEECCEEccCCCHHHHHHcCCEeCCcccccCcCcCCC----cHHH
Confidence 459999999999999999999999998887777 5554322 233333457899987742 33332 4555
Q ss_pred HHHHhc--ccc---CCcHHHHHHHHHcCCceEEec---ch-hhHHH---HHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 202 FASVHG--NLY---GTSVEAVEAVADAGKRCILDI---DV-QGARS---VRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 202 ~~~~~~--~~~---g~~~~~i~~~~~~g~~~vldl---d~-~g~~~---l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
|+.+.. ... -......++..++. ..-+.+ ++ +.... ..+|+.-....+..+|++++|||||++.|.-
T Consensus 357 Ni~l~~l~~~~~~~~i~~~~e~~~~~~~-~~~l~Ik~~s~~~~v~~LSGGNQQKVvlarwL~~~p~vLilDEPTRGIDVG 435 (500)
T COG1129 357 NITLASLRRFSRRGLIDRRKERALAERY-IRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVLILDEPTRGIDVG 435 (500)
T ss_pred heehHhhhhhccccccChHHHHHHHHHH-HHhcCcccCCccchhhcCCchhhhhHHHHHHHhcCCCEEEECCCCcCcccc
Confidence 554431 100 11111111111110 000111 00 11111 1244555555788899999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQT 326 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~ 326 (399)
...+|.+.++++.++ ...+++++.+++|.+..+||+++|.+|+++..-.
T Consensus 436 AK~eIy~li~~lA~~--------G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~ 484 (500)
T COG1129 436 AKAEIYRLIRELAAE--------GKAILMISSELPELLGLSDRILVMREGRIVGELD 484 (500)
T ss_pred hHHHHHHHHHHHHHC--------CCEEEEEeCChHHHHhhCCEEEEEECCEEEEEec
Confidence 999999999987754 3378999999999999999999999998887533
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.7e-09 Score=107.14 Aligned_cols=143 Identities=15% Similarity=0.233 Sum_probs=85.4
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYG 211 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g 211 (399)
-...++|+||||+|||||+++|.|.+.|..| .... ..+-.+|+.-|+... ++....+-.|++ .+.+.
T Consensus 612 mdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~G-E~RK-------nhrL~iG~FdQh~~E--~L~~Eetp~EyL---qr~FN 678 (807)
T KOG0066|consen 612 MDSRIAIVGPNGVGKSTLLKLLIGKLDPNDG-ELRK-------NHRLRIGWFDQHANE--ALNGEETPVEYL---QRKFN 678 (807)
T ss_pred ccceeEEECCCCccHHHHHHHHhcCCCCCcc-hhhc-------cceeeeechhhhhHH--hhccccCHHHHH---HHhcC
Confidence 3467899999999999999999999998887 3321 111126666555432 222222444443 33455
Q ss_pred CcHHHHHHHHHc-CC------ceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 015825 212 TSVEAVEAVADA-GK------RCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEE 284 (399)
Q Consensus 212 ~~~~~i~~~~~~-g~------~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~ 284 (399)
.+....+..+-. |+ ..+.++ .|-+. .++..+-.-+..|++++||||++++|.++...+.+.|.++.
T Consensus 679 lpyq~ARK~LG~fGL~sHAHTikikdL--SGGQK---aRValaeLal~~PDvlILDEPTNNLDIESIDALaEAIney~-- 751 (807)
T KOG0066|consen 679 LPYQEARKQLGTFGLASHAHTIKIKDL--SGGQK---ARVALAELALGGPDVLILDEPTNNLDIESIDALAEAINEYN-- 751 (807)
T ss_pred CChHHHHHHhhhhhhhhccceEeeeec--CCcch---HHHHHHHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc--
Confidence 555555544321 11 112222 22221 11222223456799999999999999988777777776542
Q ss_pred HHhccCCCcceEEEeCCCH
Q 015825 285 IKQGKSSGIFDHILYNDKL 303 (399)
Q Consensus 285 l~~~~~~~~~t~Viv~hdl 303 (399)
-.+|+|+||.
T Consensus 752 ---------GgVi~VsHDe 761 (807)
T KOG0066|consen 752 ---------GGVIMVSHDE 761 (807)
T ss_pred ---------CcEEEEeccc
Confidence 1578999985
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=4.3e-09 Score=109.70 Aligned_cols=153 Identities=22% Similarity=0.195 Sum_probs=101.2
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhc
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHG 207 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~ 207 (399)
....+|+.+.+.||||||||||+++|+|+-|--.| .+.. + .....-|++|.+- +..|+..|.+.|..
T Consensus 414 ~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G-~I~~---P----~~~~~lflpQ~PY-----~p~GtLre~l~YP~ 480 (604)
T COG4178 414 FEVRPGERLLITGESGAGKTSLLRALAGLWPWGSG-RISM---P----ADSALLFLPQRPY-----LPQGTLREALCYPN 480 (604)
T ss_pred eeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCC-ceec---C----CCCceEEecCCCC-----CCCccHHHHHhCCC
Confidence 34568999999999999999999999999987666 3221 1 1122568888763 34458888888876
Q ss_pred cccCCcHHHHHHHHHc-CCceE---Ee-cchh--hHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHH
Q 015825 208 NLYGTSVEAVEAVADA-GKRCI---LD-IDVQ--GARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRN 280 (399)
Q Consensus 208 ~~~g~~~~~i~~~~~~-g~~~v---ld-ld~~--g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~ 280 (399)
.....+.+++.+.+.+ ++..+ ++ .+.. -+....+|++..+.++++.|++.+|||-|+++|+.++..+.+.+++
T Consensus 481 ~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~ 560 (604)
T COG4178 481 AAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKE 560 (604)
T ss_pred CCCCCChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHh
Confidence 5533555666555543 11110 00 0000 0011134555666799999999999999999999988888887776
Q ss_pred HHHHHHhccCCCcceEEEeCCC
Q 015825 281 AKEEIKQGKSSGIFDHILYNDK 302 (399)
Q Consensus 281 ~~~~l~~~~~~~~~t~Viv~hd 302 (399)
++ -.+++|-|.|.
T Consensus 561 ---~l------p~~tvISV~Hr 573 (604)
T COG4178 561 ---EL------PDATVISVGHR 573 (604)
T ss_pred ---hC------CCCEEEEeccc
Confidence 22 23477778884
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-08 Score=112.72 Aligned_cols=87 Identities=13% Similarity=0.068 Sum_probs=69.8
Q ss_pred HcCCcceeEEEEcCC---ChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 240 RASPLDAIFIFICPP---SMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 240 ~~~~~~~~~ili~~P---~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
.+|+...+.+++.+| ++.+||||++++|+.+...+.+.|.++.++ ..++++++|+++.+ ..+++++.+
T Consensus 835 EkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~--------G~TVIiitH~~~~i-~~aD~ii~L 905 (943)
T PRK00349 835 EAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDK--------GNTVVVIEHNLDVI-KTADWIIDL 905 (943)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhC--------CCEEEEEecCHHHH-HhCCEEEEe
Confidence 344555556777887 899999999999999999999988886532 23889999999886 578999999
Q ss_pred ------cCCeeeecCCCccccCCCc
Q 015825 317 ------DGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 317 ------~~~~~~~~~~~~~~~~~p~ 335 (399)
.+|.++..+++.++...|.
T Consensus 906 gp~~G~~~G~Iv~~Gt~~el~~~~~ 930 (943)
T PRK00349 906 GPEGGDGGGEIVATGTPEEVAKVEA 930 (943)
T ss_pred cCCcCCCCCEEEEeCCHHHHHhCcc
Confidence 6889998898888877664
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=2.7e-09 Score=106.39 Aligned_cols=166 Identities=15% Similarity=0.075 Sum_probs=95.0
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcc
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGN 208 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~ 208 (399)
....|++++++||||-||||++++|+|.+.|..|. ... -.++|-+|--.. ...+++.+++.-...
T Consensus 363 ~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~--~~~---------~~vSyKPQyI~~----~~~gtV~~~l~~~~~ 427 (591)
T COG1245 363 EIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS--EED---------LKVSYKPQYISP----DYDGTVEDLLRSAIR 427 (591)
T ss_pred eeecceEEEEECCCCcchHHHHHHHhccccCCCCC--Ccc---------ceEeecceeecC----CCCCcHHHHHHHhhh
Confidence 34589999999999999999999999999998883 100 114555543110 011233333221110
Q ss_pred c-cCCcHHHHHHHHHcCC--ceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHH
Q 015825 209 L-YGTSVEAVEAVADAGK--RCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEI 285 (399)
Q Consensus 209 ~-~g~~~~~i~~~~~~g~--~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l 285 (399)
. ++.+. .+..+-+.+ .-++|-....+....-|++..+.+|..+.++-+||||.+-||.+.+-...+.+++....-
T Consensus 428 ~~~~~s~--~~~ei~~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~ 505 (591)
T COG1245 428 SAFGSSY--FKTEIVKPLNLEDLLERPVDELSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENN 505 (591)
T ss_pred hhcccch--hHHhhcCccchHHHHhcccccCCchhHHHHHHHHHhccccCEEEecCchhhccHHHHHHHHHHHHHHHhhc
Confidence 0 11110 000000000 001111111111112234455668888999999999999999887777777777765432
Q ss_pred HhccCCCcceEEEeCCCHHHHHHHHHHhhcccC
Q 015825 286 KQGKSSGIFDHILYNDKLEECYENLKKHLGLDG 318 (399)
Q Consensus 286 ~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~ 318 (399)
..+..++.||+-..--..+++++..+
T Consensus 506 -------~kta~vVdHDi~~~dyvsDr~ivF~G 531 (591)
T COG1245 506 -------EKTALVVDHDIYMIDYVSDRLIVFEG 531 (591)
T ss_pred -------CceEEEEecceehhhhhhceEEEEec
Confidence 23788999998666656677666553
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=6.9e-09 Score=119.71 Aligned_cols=84 Identities=12% Similarity=0.136 Sum_probs=66.9
Q ss_pred HcCCcceeEEEE---cCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 240 RASPLDAIFIFI---CPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 240 ~~~~~~~~~ili---~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
.+++...+.+++ .+|++.+||||++++|+.+.+.+.+.|.++.++ ..++|+++|+++.+ ..+++++.+
T Consensus 814 E~QRV~LAraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~--------G~TVIiIsHdl~~i-~~aDrVi~L 884 (1809)
T PRK00635 814 EIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQ--------GHTVVIIEHNMHVV-KVADYVLEL 884 (1809)
T ss_pred HHHHHHHHHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc--------CCEEEEEeCCHHHH-HhCCEEEEE
Confidence 344455555665 589999999999999999999999999886532 23789999999988 789999988
Q ss_pred c------CCeeeecCCCccccC
Q 015825 317 D------GSIATNHQTSPKGID 332 (399)
Q Consensus 317 ~------~~~~~~~~~~~~~~~ 332 (399)
. +|.++..++++++..
T Consensus 885 ~p~gg~~~G~iv~~Gtpeel~~ 906 (1809)
T PRK00635 885 GPEGGNLGGYLLASCSPEELIH 906 (1809)
T ss_pred ccCCCCCCCEEEEeCCHHHHHh
Confidence 5 678888888877654
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=98.63 E-value=2e-08 Score=92.19 Aligned_cols=63 Identities=16% Similarity=-0.020 Sum_probs=46.5
Q ss_pred cCCChHHHHHHHHhCCCCcHHHHHH-HHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 252 CPPSMEELEERLRARGTETEDQILK-RLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 252 ~~P~lllLDEpl~~lD~~~~e~i~~-~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
.+|++.++|||++++|+.....+.. .++.+.+ ..+++++++|+ .+....+++++.+.+|.+..
T Consensus 107 ~~p~llllDEp~~glD~~~~~~i~~~~l~~l~~--------~~~~vi~~tH~-~~l~~~~d~~~~l~~g~l~~ 170 (200)
T cd03280 107 DPDSLVLLDELGSGTDPVEGAALAIAILEELLE--------RGALVIATTHY-GELKAYAYKREGVENASMEF 170 (200)
T ss_pred CCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHHh--------cCCEEEEECCH-HHHHHHHhcCCCeEEEEEEE
Confidence 5788999999999999988777754 4555432 13478899998 45667788888777776654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=98.62 E-value=6.7e-09 Score=95.45 Aligned_cols=63 Identities=16% Similarity=0.039 Sum_probs=41.1
Q ss_pred EcCCChHHHHHHHHhCCCCcHHHHHHH-HHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeee
Q 015825 251 ICPPSMEELEERLRARGTETEDQILKR-LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIAT 322 (399)
Q Consensus 251 i~~P~lllLDEpl~~lD~~~~e~i~~~-L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~ 322 (399)
+.+|++.++|||++++|+.....+... ++.+.+ ...++++++|+.+. ...+++...+..+.+.
T Consensus 106 ~~~~~llllDEp~~gld~~~~~~l~~~ll~~l~~--------~~~~vi~~tH~~~~-~~~~~~~~~l~~~~~~ 169 (202)
T cd03243 106 ATPRSLVLIDELGRGTSTAEGLAIAYAVLEHLLE--------KGCRTLFATHFHEL-ADLPEQVPGVKNLHME 169 (202)
T ss_pred ccCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh--------cCCeEEEECChHHH-HHHhhcCCCeEEEEEE
Confidence 347889999999999999877766554 343321 13478899998755 4456554444444333
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >PRK04040 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.59 E-value=2.4e-06 Score=77.77 Aligned_cols=75 Identities=28% Similarity=0.326 Sum_probs=54.0
Q ss_pred HHcCCcceeEEEEcCCChHHHHHHHHh----CCCCcHHHHHHHHHHHHHHHH-hccCCCcceEEEeCCC--HHHHHHHHH
Q 015825 239 VRASPLDAIFIFICPPSMEELEERLRA----RGTETEDQILKRLRNAKEEIK-QGKSSGIFDHILYNDK--LEECYENLK 311 (399)
Q Consensus 239 l~~~~~~~~~ili~~P~lllLDEpl~~----lD~~~~e~i~~~L~~~~~~l~-~~~~~~~~t~Viv~hd--leea~~~l~ 311 (399)
++...+..+++|..+|+ .++..|+.. |+.++.+.+..++........ .....+.+..+++|++ +++|+..+.
T Consensus 106 ~~~l~pd~ii~l~a~p~-~i~~Rrl~d~~R~R~~es~e~I~~~~~~a~~~a~~~a~~~g~~~~iI~N~d~~~e~a~~~i~ 184 (188)
T PRK04040 106 LEELNPDVIVLIEADPD-EILMRRLRDETRRRDVETEEDIEEHQEMNRAAAMAYAVLTGATVKIVENREGLLEEAAEEIV 184 (188)
T ss_pred HhhcCCCEEEEEeCCHH-HHHHHHhcccccCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH
Confidence 34556666666666664 888888854 888888999888877665422 2222355788999999 999999988
Q ss_pred Hhh
Q 015825 312 KHL 314 (399)
Q Consensus 312 ~ii 314 (399)
.++
T Consensus 185 ~ii 187 (188)
T PRK04040 185 EVL 187 (188)
T ss_pred HHh
Confidence 765
|
|
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=98.56 E-value=4.1e-08 Score=100.56 Aligned_cols=153 Identities=20% Similarity=0.229 Sum_probs=95.7
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhc--
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHG-- 207 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~-- 207 (399)
..+|+.+.|+||||||||+|++.|.|+-+...|.-..++...+ .++-|+||.|- +..|+..+-+-|..
T Consensus 458 V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~-----~~lfflPQrPY-----mt~GTLRdQvIYP~~~ 527 (659)
T KOG0060|consen 458 VPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP-----KDLFFLPQRPY-----MTLGTLRDQVIYPLKA 527 (659)
T ss_pred ecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC-----CceEEecCCCC-----ccccchhheeeccCcc
Confidence 4689999999999999999999999999877773333332211 34678888762 33445555555541
Q ss_pred ---cccCCcHHHHHHHHHcCC-ceEEe----cchhh-------HHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 208 ---NLYGTSVEAVEAVADAGK-RCILD----IDVQG-------ARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 208 ---~~~g~~~~~i~~~~~~g~-~~vld----ld~~g-------~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
...+.+.+.+.+.++..+ ..+++ ++++. +.....|+...+..|.+.|.+.+|||-|++.+.+.+.
T Consensus 528 ~~~~~~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~ 607 (659)
T KOG0060|consen 528 EDMDSKSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLSPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEG 607 (659)
T ss_pred ccccccCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcCHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHH
Confidence 112233344444443211 00000 11100 0111345556667899999999999999999988777
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCH
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKL 303 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdl 303 (399)
.+.+.+++ + ..|.+=|.|-.
T Consensus 608 ~~Yr~~r~----~-------giT~iSVgHRk 627 (659)
T KOG0060|consen 608 ALYRKCRE----M-------GITFISVGHRK 627 (659)
T ss_pred HHHHHHHH----c-------CCeEEEeccHH
Confidence 77766665 2 34788788853
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.50 E-value=8.8e-08 Score=106.32 Aligned_cols=190 Identities=18% Similarity=0.188 Sum_probs=129.7
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCc---ccceeeecCCCcccc-ccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSM---FGFSVSHTTRAPRAM-EKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~---~g~~i~~ttr~~~~~-~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|+.+.++||.|||||||++.|+|..... .| .+++........ .+....|..|+.-.++.+ |+.|.+
T Consensus 136 g~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~-~isy~G~~~~e~~~~~~~aY~~e~DvH~p~l----TVreTl 210 (1391)
T KOG0065|consen 136 GIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSG-EITYNGHDLKEFVPKKTVAYNSEQDVHFPEL----TVRETL 210 (1391)
T ss_pred eeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCC-ceeECCCcccccccCceEEecccccccccee----EEeehh
Confidence 344689999999999999999999999987542 23 444433322211 134478998887778888 888888
Q ss_pred HHhccccCC-------cHHHHHHHHHc------CCceEEec--c---hhhHHHHHcCCcceeEEEEcCCChHHHHHHHHh
Q 015825 204 SVHGNLYGT-------SVEAVEAVADA------GKRCILDI--D---VQGARSVRASPLDAIFIFICPPSMEELEERLRA 265 (399)
Q Consensus 204 ~~~~~~~g~-------~~~~i~~~~~~------g~~~vldl--d---~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~ 265 (399)
.|..+|.+- .+.+....+.+ |+....|- . ..|.....+.++...-.++++++...+||.+++
T Consensus 211 dFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~~~~~~De~t~G 290 (1391)
T KOG0065|consen 211 DFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPASILFWDEITRG 290 (1391)
T ss_pred hHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCcceeeeeccccc
Confidence 888777432 22221110111 33222221 0 112222345666777799999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhccCCCcceEEE-eCCCHHHHHHHHHHhhcccCCeeeecCCCcc
Q 015825 266 RGTETEDQILKRLRNAKEEIKQGKSSGIFDHIL-YNDKLEECYENLKKHLGLDGSIATNHQTSPK 329 (399)
Q Consensus 266 lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Vi-v~hdleea~~~l~~ii~~~~~~~~~~~~~~~ 329 (399)
+|..+.-++.+.++++....+. +.++ +....+++++..|.++.+.+|.++..|...+
T Consensus 291 LDSsTal~iik~lr~~a~~~~~-------t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~ 348 (1391)
T KOG0065|consen 291 LDSSTAFQIIKALRQLAHITGA-------TALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDE 348 (1391)
T ss_pred ccHHHHHHHHHHHHHHHhhhcc-------eEEEEeccCChHHHHhhhheeeeeccceEEeccHHH
Confidence 9999999999999987654322 4443 4457789999999999999999998876443
|
|
| >PRK14731 coaE dephospho-CoA kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.8e-07 Score=83.66 Aligned_cols=64 Identities=22% Similarity=0.278 Sum_probs=47.0
Q ss_pred EEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC-CHHHHHHHHHHhhc
Q 015825 249 IFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKKHLG 315 (399)
Q Consensus 249 ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h-dleea~~~l~~ii~ 315 (399)
+++.+++.+++-+|+..|+..+++++.+++.....+... ...+|++|.|. ++++....+++++.
T Consensus 137 ii~V~a~~e~~~~Rl~~R~~~s~e~~~~Ri~~q~~~~~~---~~~ad~vI~N~g~~e~l~~~i~~~~~ 201 (208)
T PRK14731 137 IVVVAADTELRLERAVQRGMGSREEIRRRIAAQWPQEKL---IERADYVIYNNGTLDELKAQTEQLYQ 201 (208)
T ss_pred EEEEECCHHHHHHHHHHcCCCCHHHHHHHHHHcCChHHH---HHhCCEEEECCCCHHHHHHHHHHHHH
Confidence 444456689999999999988899999998753322221 23568888886 89999988887653
|
|
| >cd01857 HSR1_MMR1 HSR1/MMR1 | Back alignment and domain information |
|---|
Probab=98.49 E-value=6.1e-07 Score=77.59 Aligned_cols=70 Identities=21% Similarity=0.204 Sum_probs=50.0
Q ss_pred cchhhhhccCCCceEEEEeCCCh---HHHHH---HHHHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 85 DRILVIKKGSSSDDCLWFLEVDT---PYVRE---QKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 85 dr~L~~~~~~~~~~~i~~~k~D~---~~~~~---l~~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.++|.... .+.+.++++||+|. +.... ..+..+++++.+|+... ...++++|++|+||||++|.|.+...
T Consensus 33 ~~~l~~~~-~~k~~iivlNK~DL~~~~~~~~~~~~~~~~~~~ii~iSa~~~---~~~~~~~G~~~vGKstlin~l~~~~~ 108 (141)
T cd01857 33 ERYVKEVD-PRKKNILLLNKADLLTEEQRKAWAEYFKKEGIVVVFFSALKE---NATIGLVGYPNVGKSSLINALVGKKK 108 (141)
T ss_pred HHHHHhcc-CCCcEEEEEechhcCCHHHHHHHHHHHHhcCCeEEEEEecCC---CcEEEEECCCCCCHHHHHHHHhCCCc
Confidence 56665332 47889999999993 22222 22456788888887521 12789999999999999999998654
|
Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.46 E-value=4.7e-08 Score=98.97 Aligned_cols=166 Identities=17% Similarity=0.204 Sum_probs=105.0
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccCC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGT 212 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g~ 212 (399)
...++.+|++|+||||+++.+.+...|..|....| ++. .++|.+|..-.+-.+.. ..+++.+ ...-|.
T Consensus 390 ~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~----~r~----ri~~f~Qhhvd~l~~~v--~~vd~~~--~~~pG~ 457 (582)
T KOG0062|consen 390 DSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRH----PRL----RIKYFAQHHVDFLDKNV--NAVDFME--KSFPGK 457 (582)
T ss_pred hhhhheeccCchhHHHHHHHHhccCCcccceeeec----ccc----eecchhHhhhhHHHHHh--HHHHHHH--HhCCCC
Confidence 45689999999999999999999888777733322 222 27888886433322211 2222221 122345
Q ss_pred cHHHHHHHHHc-CCceEEecchhhHHHH---HcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhc
Q 015825 213 SVEAVEAVADA-GKRCILDIDVQGARSV---RASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQG 288 (399)
Q Consensus 213 ~~~~i~~~~~~-g~~~vldld~~g~~~l---~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~ 288 (399)
+.+++++.+.. |..- ++..+....+ ++.++..+.+....|.+++||||++.||.++-..+-+.|+.+.
T Consensus 458 ~~ee~r~hl~~~Gl~g--~la~~si~~LSGGQKsrvafA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~------ 529 (582)
T KOG0062|consen 458 TEEEIRRHLGSFGLSG--ELALQSIASLSGGQKSRVAFAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFN------ 529 (582)
T ss_pred CHHHHHHHHHhcCCCc--hhhhccccccCCcchhHHHHHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcC------
Confidence 66777665543 2211 1111111212 2333444456667888999999999999888777777776532
Q ss_pred cCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 289 KSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 289 ~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
--+|+|+||.+-+-..++++.+-.+|.+..
T Consensus 530 -----GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 530 -----GGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred -----CcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 157899999988888888888888776654
|
|
| >TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily | Back alignment and domain information |
|---|
Probab=98.43 E-value=8.9e-07 Score=79.71 Aligned_cols=92 Identities=14% Similarity=0.183 Sum_probs=49.0
Q ss_pred cCCceEEecchhhHHH---HHcCCcceeEEEEcCCChHHHHHHHHhCCC------CcHHHHHHHHHHHHHHH----Hhcc
Q 015825 223 AGKRCILDIDVQGARS---VRASPLDAIFIFICPPSMEELEERLRARGT------ETEDQILKRLRNAKEEI----KQGK 289 (399)
Q Consensus 223 ~g~~~vldld~~g~~~---l~~~~~~~~~ili~~P~lllLDEpl~~lD~------~~~e~i~~~L~~~~~~l----~~~~ 289 (399)
.+..+++|..+..... +......+-.++..+.+...+-+|+..|.. .+++.+.+++..+..+. ..++
T Consensus 81 ~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~~~~~~r~~~~~~~~~~~~~~y~ 160 (188)
T TIGR01360 81 TSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNEKTIKKRLETYYKATEPVIAYYE 160 (188)
T ss_pred cCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHH
Confidence 4556777765533322 222222222233333346788888876653 36778888988776542 2222
Q ss_pred CCCcceEEEeCCCHHHHHHHHHHhh
Q 015825 290 SSGIFDHILYNDKLEECYENLKKHL 314 (399)
Q Consensus 290 ~~~~~t~Viv~hdleea~~~l~~ii 314 (399)
..+.+-.+-.+.+++++...+...+
T Consensus 161 ~~~~~~~id~~~~~~~v~~~i~~~l 185 (188)
T TIGR01360 161 TKGKLRKINAEGTVDDVFLQVCTAI 185 (188)
T ss_pred hCCCEEEEECCCCHHHHHHHHHHHH
Confidence 1122222223447888887776654
|
Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351. |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=98.42 E-value=9.9e-08 Score=105.30 Aligned_cols=79 Identities=10% Similarity=0.079 Sum_probs=60.9
Q ss_pred CCcceeEEEEc---CCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc--
Q 015825 242 SPLDAIFIFIC---PPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL-- 316 (399)
Q Consensus 242 ~~~~~~~ili~---~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~-- 316 (399)
++...+.+|+. .|++.+||||++++|+.....+.+.|.++.++ ..++++++|+++.+ ..+++++.+
T Consensus 835 QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~--------G~TVIvi~H~~~~i-~~aD~ii~Lgp 905 (924)
T TIGR00630 835 QRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQ--------GNTVVVIEHNLDVI-KTADYIIDLGP 905 (924)
T ss_pred HHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--------CCEEEEEeCCHHHH-HhCCEEEEecC
Confidence 34444445554 58899999999999999999999999886532 23889999999876 568999988
Q ss_pred ----cCCeeeecCCCcc
Q 015825 317 ----DGSIATNHQTSPK 329 (399)
Q Consensus 317 ----~~~~~~~~~~~~~ 329 (399)
.+|+++..+++.+
T Consensus 906 ~~G~~gG~iv~~G~~~~ 922 (924)
T TIGR00630 906 EGGDGGGTIVASGTPEE 922 (924)
T ss_pred CccCCCCEEEEeCCHHH
Confidence 6788887776543
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.4e-08 Score=85.88 Aligned_cols=56 Identities=13% Similarity=0.042 Sum_probs=43.7
Q ss_pred CCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 253 PPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 253 ~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
+|++.++|||++++|+.....+.+.+.++..+ .+++++++|+.+.+. .+++++.+.
T Consensus 99 ~~~llllDEp~~gld~~~~~~l~~~l~~~~~~--------~~~vii~TH~~~~~~-~~d~~~~l~ 154 (162)
T cd03227 99 PRPLYILDEIDRGLDPRDGQALAEAILEHLVK--------GAQVIVITHLPELAE-LADKLIHIK 154 (162)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhc--------CCEEEEEcCCHHHHH-hhhhEEEEE
Confidence 67899999999999999888888888775432 347889999987764 577766654
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >cd01849 YlqF_related_GTPase YlqF-related GTPases | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.3e-06 Score=76.79 Aligned_cols=85 Identities=19% Similarity=0.160 Sum_probs=57.7
Q ss_pred hhccCCCceEEEEeCCCh---HHHH----HHHHHhCCeEEEeccC-cc-------------------------CCCCcEE
Q 015825 90 IKKGSSSDDCLWFLEVDT---PYVR----EQKKVVGAEVVAWSKG-VI-------------------------GNVEKPV 136 (399)
Q Consensus 90 ~~~~~~~~~~i~~~k~D~---~~~~----~l~~~~g~~v~~~s~~-~~-------------------------~~~g~~~ 136 (399)
.++..+.+.++++||+|. +.+. .+.+..++.++.+|+. .. ...+..+
T Consensus 24 ~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~~~~ii~vSa~~~~gi~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~ 103 (155)
T cd01849 24 LIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKESAFTKQTNSNLKSYAKDGKLKKSITV 103 (155)
T ss_pred HHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhCCceEEEEeccCCcChhhHHHHHHHHhHHHHHHHHhccccccCcEE
Confidence 345568899999999993 2222 2223446777887765 11 1245678
Q ss_pred EEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcccc
Q 015825 137 VITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAM 175 (399)
Q Consensus 137 ~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~ 175 (399)
+++|.+|+||||++|.|.+......+ ...++|+.....
T Consensus 104 ~~~G~~~~GKstlin~l~~~~~~~~~-~~~~~t~~~~~~ 141 (155)
T cd01849 104 GVIGYPNVGKSSVINALLNKLKLKVG-NVPGTTTSQQEV 141 (155)
T ss_pred EEEccCCCCHHHHHHHHHcccccccc-CCCCcccceEEE
Confidence 99999999999999999987644334 445677665443
|
These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases. |
| >cd01858 NGP_1 NGP-1 | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.8e-07 Score=78.64 Aligned_cols=87 Identities=15% Similarity=0.068 Sum_probs=51.6
Q ss_pred cchhhhhccCCCceEEEEeCCCh---HHHH----HHHHHhCCeEEEeccC-ccC-----------------CCCcEEEEE
Q 015825 85 DRILVIKKGSSSDDCLWFLEVDT---PYVR----EQKKVVGAEVVAWSKG-VIG-----------------NVEKPVVIT 139 (399)
Q Consensus 85 dr~L~~~~~~~~~~~i~~~k~D~---~~~~----~l~~~~g~~v~~~s~~-~~~-----------------~~g~~~~l~ 139 (399)
.++|.. ...+.++++++||+|. +.+. .+.+.+...++..|+. ..+ ..+..++++
T Consensus 30 ~~~l~~-~~~~~p~ilVlNKiDl~~~~~~~~~~~~~~~~~~~~~~~iSa~~~~~~~~L~~~l~~~~~~~~~~~~~~v~~~ 108 (157)
T cd01858 30 EEYLKK-EKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFGKGSLIQLLRQFSKLHSDKKQISVGFI 108 (157)
T ss_pred HHHHHh-ccCCCCEEEEEEchhcCCHHHHHHHHHHHhcCCcEEEEEeeccccccHHHHHHHHHHHHhhhccccceEEEEE
Confidence 566643 2345889999999993 2222 2222222223444433 110 123456799
Q ss_pred cCCCCCHHHHHhhhhhccCCcccceeeecCCCcc
Q 015825 140 GPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR 173 (399)
Q Consensus 140 GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~ 173 (399)
|++|+|||||+|.|.+......+ .++.+|+...
T Consensus 109 G~~nvGKStliN~l~~~~~~~~~-~~~g~T~~~~ 141 (157)
T cd01858 109 GYPNVGKSSIINTLRSKKVCKVA-PIPGETKVWQ 141 (157)
T ss_pred eCCCCChHHHHHHHhcCCceeeC-CCCCeeEeEE
Confidence 99999999999999987655444 4444555433
|
Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus. |
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.39 E-value=2.2e-07 Score=94.32 Aligned_cols=150 Identities=19% Similarity=0.251 Sum_probs=89.6
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhc
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHG 207 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~ 207 (399)
....+|--+.|+||||||||+|.+.|.|+.|...| .. +..++. .+.|+||.|- +..+++.+.+-|..
T Consensus 503 f~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g-~L-~~P~~~------~mFYIPQRPY-----ms~gtlRDQIIYPd 569 (728)
T KOG0064|consen 503 FQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNG-LL-SIPRPN------NIFYIPQRPY-----MSGGTLRDQIIYPD 569 (728)
T ss_pred EEecCCceEEEECCCCccHHHHHHHHhccCcccCC-ee-ecCCCc------ceEeccCCCc-----cCcCcccceeecCC
Confidence 33468999999999999999999999999876555 22 222221 2567777652 22334444443332
Q ss_pred cc-----cCCcHHHHHHHHHc-----------CCceEEecchhh-HHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 208 NL-----YGTSVEAVEAVADA-----------GKRCILDIDVQG-ARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 208 ~~-----~g~~~~~i~~~~~~-----------g~~~vldld~~g-~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
.. .|....+..+++.. |...+.| -.. +....+|+...+..|.+.|...+|||-+++..++.
T Consensus 570 S~e~~~~kg~~d~dL~~iL~~v~L~~i~qr~~g~da~~d--Wkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsidv 647 (728)
T KOG0064|consen 570 SSEQMKRKGYTDQDLEAILDIVHLEHILQREGGWDAVRD--WKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSIDV 647 (728)
T ss_pred cHHHHHhcCCCHHHHHHHHHHhhHHHHHHhccChhhhcc--HHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccch
Confidence 11 23333333332211 1111100 000 00112455556668999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCH
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKL 303 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdl 303 (399)
+..+.+..+.+ .++.+=++|.+
T Consensus 648 E~~i~~~ak~~-----------gi~llsithrp 669 (728)
T KOG0064|consen 648 EGKIFQAAKDA-----------GISLLSITHRP 669 (728)
T ss_pred HHHHHHHHHhc-----------CceEEEeecCc
Confidence 88777666652 44777788854
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.9e-07 Score=82.76 Aligned_cols=177 Identities=15% Similarity=0.089 Sum_probs=104.1
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc----cccCCeeEEecChHHHHHH-Hhhh-----
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA----MEKDGVHYHFTERSVMEKA-IKDG----- 197 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~----~~~~~i~yvfq~~~lf~~~-~~~~----- 197 (399)
.....|....++|.||+|||||++.|.|..-...| .+....+.+-. .......|+=.+ |.+. ...+
T Consensus 35 ldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~-~v~VlgrsaFhDt~l~~Sgdl~YLGge---W~~~~~~agevplq 110 (291)
T KOG2355|consen 35 LDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGG-VVQVLGRSAFHDTSLESSGDLSYLGGE---WSKTVGIAGEVPLQ 110 (291)
T ss_pred eccCCCceEEEEecCCCchhhhHHHhcCcccccCC-eEEEcCcCccccccccccCceeEeccc---cccccccccccccc
Confidence 34568899999999999999999999998654333 33322222111 001112333111 0000 0000
Q ss_pred ---hhHHHHHHhccccCCcHHHHHHHHHcCCceEEecchh----hHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 198 ---KFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQ----GARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 198 ---~~~E~~~~~~~~~g~~~~~i~~~~~~g~~~vldld~~----g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
.+.+.+ +. .-|..... .+.+..++|++.+ .....++.+.+...-++.+-.+++|||-+-.+|...
T Consensus 111 ~D~sae~mi-fg--V~g~dp~R-----re~LI~iLDIdl~WRmHkvSDGqrRRVQicMGLL~PfkVLLLDEVTVDLDVlA 182 (291)
T KOG2355|consen 111 GDISAEHMI-FG--VGGDDPER-----REKLIDILDIDLRWRMHKVSDGQRRRVQICMGLLKPFKVLLLDEVTVDLDVLA 182 (291)
T ss_pred ccccHHHHH-hh--ccCCChhH-----hhhhhhheeccceEEEeeccccchhhhHHHHhcccceeEEEeeeeEeehHHHH
Confidence 111111 10 01111111 1123344555442 122334566777778888888899999999999888
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
+..+.+.+++-.++ ..+|+|+.||-.+..-.+-.+++-+..|+++.
T Consensus 183 RadLLeFlkeEce~-------RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 183 RADLLEFLKEECEQ-------RGATIVYATHIFDGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred HHHHHHHHHHHHhh-------cCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence 88887777763332 46799999998888878888888888888775
|
|
| >KOG0708 consensus Membrane-associated guanylate kinase MAGUK (contains PDZ, SH3, HOOK and GUK domains) [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.35 E-value=4.4e-06 Score=81.77 Aligned_cols=170 Identities=29% Similarity=0.485 Sum_probs=130.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~ 210 (399)
..-+++.|+||- |--++..|....+..|+..+.|++++. .+.+......+.|++...+.+++|
T Consensus 185 ~~~RPVlilg~~---~d~l~~~Lv~e~~~kF~~C~~~t~~~~--------------~~eme~~~k~~~fI~~~q~~~~~~ 247 (359)
T KOG0708|consen 185 NYLRPVLILGPL---LDRLLDNLVNEFPDKFKSCLPETLRPS--------------REEMERDSKEETFIDAGQRSNGLY 247 (359)
T ss_pred cccCceEeccch---HHHHHHHHHHhhhccccccchhhhccc--------------HHHhhhhcccCceeeecccCCCcc
Confidence 356899999997 555999998888888987778887754 234555566778889888888999
Q ss_pred CCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccC
Q 015825 211 GTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKS 290 (399)
Q Consensus 211 g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~ 290 (399)
+++...+++..+.++.|++|+...+.+.+++....++++|+..-+...+.|+=..+-....+++.++-..+..++
T Consensus 248 ~tsv~si~~va~k~~HCiLdv~~~ai~rLq~~~IyPIvIfIr~ks~~~i~e~~~~~t~~~ake~~e~a~klEqe~----- 322 (359)
T KOG0708|consen 248 GTSVASIREVAEKGKHCLLDVGGDAIRRLQRNQIYPIVIFIRVKSKKQIKERNLKITGEQAKELLERARKLEQEL----- 322 (359)
T ss_pred eehHHHHHHHhcCCCceEEecCcchHHHHHhcceeceEEEEEechHHHHHHHhcccchHHHHHHHHHHHHhHhhh-----
Confidence 999999999999999999999999999999999999999999887776666543332333333333333333333
Q ss_pred CCcceEEEeCCCHHHHHHHHHHhhcccCCeee
Q 015825 291 SGIFDHILYNDKLEECYENLKKHLGLDGSIAT 322 (399)
Q Consensus 291 ~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~ 322 (399)
...++.++--+.+++++..++.+|....++++
T Consensus 323 ~~~~t~vv~~~s~e~i~~qvk~~I~~Eq~k~i 354 (359)
T KOG0708|consen 323 DRYFTLVVQGGSLEELLSQVKDIIEDEQKKVI 354 (359)
T ss_pred hhceEEEEecccHHHHHHHHHHHHHHhhCCeE
Confidence 34678888888999999999999888766544
|
|
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.2e-07 Score=88.06 Aligned_cols=57 Identities=14% Similarity=0.094 Sum_probs=44.3
Q ss_pred EEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHH
Q 015825 250 FICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKK 312 (399)
Q Consensus 250 li~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ 312 (399)
++.+|++.++|||++++|+.++..+.+.+.++.++. +..++++++|++.+....+++
T Consensus 145 ~~~~p~llllDEP~~~LD~~~~~~i~~~l~~~~~~~------g~~~viiith~~~~~~~~~~~ 201 (213)
T cd03277 145 ELTRCPFRVVDEINQGMDPTNERKVFDMLVETACKE------GTSQYFLITPKLLPGLNYHEK 201 (213)
T ss_pred hccCCCEEEEecccccCCHHHHHHHHHHHHHHhhcC------CCceEEEEchhhccCCcccCc
Confidence 357899999999999999999999999888864320 123689999988777766654
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.9e-07 Score=91.47 Aligned_cols=185 Identities=16% Similarity=0.126 Sum_probs=121.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCC------CccccccCCeeEEecCh---HHHHHHHhhhhhH
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTR------APRAMEKDGVHYHFTER---SVMEKAIKDGKFL 200 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr------~~~~~~~~~i~yvfq~~---~lf~~~~~~~~~~ 200 (399)
...|++++|.|-+|-|-+.|+.+|+|+.++..| .+..... .++.....+++|+|.+. .+...+ ++.
T Consensus 281 Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G-~I~l~G~~v~~~~~~~~~r~~G~~~VPedR~~~Glv~~~----sl~ 355 (501)
T COG3845 281 VRAGEIVGIAGVAGNGQSELVEAISGLRKPASG-RILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDL----SLA 355 (501)
T ss_pred EecCcEEEEEecCCCCHHHHHHHHhCCCccCCc-eEEECCEeccccCCHHHHHhcCCccCChhhccCccccCc----cHH
Confidence 358999999999999999999999999877667 5543222 22333345789998875 122222 555
Q ss_pred HHHHHhccc------cC-CcHHHHHHHHHcCCceEEecc---hh-hHHHHH---cCCcceeEEEEcCCChHHHHHHHHhC
Q 015825 201 EFASVHGNL------YG-TSVEAVEAVADAGKRCILDID---VQ-GARSVR---ASPLDAIFIFICPPSMEELEERLRAR 266 (399)
Q Consensus 201 E~~~~~~~~------~g-~~~~~i~~~~~~g~~~vldld---~~-g~~~l~---~~~~~~~~ili~~P~lllLDEpl~~l 266 (399)
||..+.... ++ .....+.+...+ ...-+|+. +. .++.+. .|++-...=+...|++++.-+|+.++
T Consensus 356 eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~-li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~~~p~lLI~~qPTrGL 434 (501)
T COG3845 356 ENLVLGRHDKKPFSRGGFLDRRAIRKFARE-LIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGL 434 (501)
T ss_pred HHhhhhhccccccccccccCHHHHHHHHHH-HHHHcCccCCCCCcchhhcCCcceehhhhhhhhccCCCEEEEcCCCccc
Confidence 554432211 11 223333322211 11111211 11 122232 33443444567899999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCc
Q 015825 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSP 328 (399)
Q Consensus 267 D~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~ 328 (399)
|....+.+.++|.+.+++ .+.+++++.|+||++..+|++.++.+|+++....+.
T Consensus 435 DvgA~~~I~~~l~e~r~~--------G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~ 488 (501)
T COG3845 435 DVGAIEFIHERLLELRDA--------GKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPE 488 (501)
T ss_pred cHHHHHHHHHHHHHHHhc--------CCEEEEEehhHHHHHHhhheeeeeeCCceecccccc
Confidence 999999999999886642 457889999999999999999999999888765443
|
|
| >PRK00081 coaE dephospho-CoA kinase; Reviewed | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.4e-06 Score=78.14 Aligned_cols=58 Identities=22% Similarity=0.251 Sum_probs=42.3
Q ss_pred CChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC-CHHHHHHHHHHhh
Q 015825 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKKHL 314 (399)
Q Consensus 254 P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h-dleea~~~l~~ii 314 (399)
.+..+.-+|+..|+..+.+++.+++.... ...+....+|+||.|. +++++..+++.++
T Consensus 133 a~~e~~~~Rl~~R~~~s~e~~~~ri~~Q~---~~~~~~~~ad~vI~N~g~~e~l~~qv~~i~ 191 (194)
T PRK00081 133 APPETQLERLMARDGLSEEEAEAIIASQM---PREEKLARADDVIDNNGDLEELRKQVERLL 191 (194)
T ss_pred CCHHHHHHHHHHcCCCCHHHHHHHHHHhC---CHHHHHHhCCEEEECCCCHHHHHHHHHHHH
Confidence 34688899999998888888888887522 2111223568888887 8999988888765
|
|
| >cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT) | Back alignment and domain information |
|---|
Probab=98.29 E-value=1e-05 Score=72.47 Aligned_cols=162 Identities=19% Similarity=0.193 Sum_probs=80.6
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCcc---cceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMF---GFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGN 208 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~---g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~ 208 (399)
+|++++|.|+|||||||+.+.|....+..+ +.+....+.+....... .++-+.. . + +...+ ...++
T Consensus 1 ~~~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~-~~~~~~~-~-~------~~~~~--~~~~~ 69 (175)
T cd00227 1 TGRIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAE-GGIEFDG-D-G------GVSPG--PEFRL 69 (175)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcccc-cccccCc-c-C------Ccccc--hHHHH
Confidence 478999999999999999999988753211 11100000000000000 0000000 0 0 00001 12224
Q ss_pred ccCCcHHHHHHHHHcCCceEEecchh---hHHH-HHcCC-cceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 015825 209 LYGTSVEAVEAVADAGKRCILDIDVQ---GARS-VRASP-LDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKE 283 (399)
Q Consensus 209 ~~g~~~~~i~~~~~~g~~~vldld~~---g~~~-l~~~~-~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~ 283 (399)
.|+.....+...+..|..+++|.... ..+. .+... .....+++. ++.+++.+|...|...... +.....
T Consensus 70 ~y~~~~~~~~~~l~~G~~VIvD~~~~~~~~~r~~~~~~~~~~~~~v~l~-~~~~~l~~R~~~R~~~~~~-----~~~~~~ 143 (175)
T cd00227 70 LEGAWYEAVAAMARAGANVIADDVFLGRAALQDCWRSFVGLDVLWVGVR-CPGEVAEGRETARGDRVPG-----QARKQA 143 (175)
T ss_pred HHHHHHHHHHHHHhCCCcEEEeeeccCCHHHHHHHHHhcCCCEEEEEEE-CCHHHHHHHHHhcCCccch-----HHHHHH
Confidence 45555666777788899999985432 2222 22111 123334444 4578999999988643221 111111
Q ss_pred HHHhccCCCcceEEEeCC--CHHHHHHHHHH
Q 015825 284 EIKQGKSSGIFDHILYND--KLEECYENLKK 312 (399)
Q Consensus 284 ~l~~~~~~~~~t~Viv~h--dleea~~~l~~ 312 (399)
........++.++.|+ +++++.+.+.+
T Consensus 144 --~~~~~~~~~dl~iDts~~s~~e~a~~i~~ 172 (175)
T cd00227 144 --RVVHAGVEYDLEVDTTHKTPIECARAIAA 172 (175)
T ss_pred --HHhcCCCcceEEEECCCCCHHHHHHHHHH
Confidence 1112223457777765 68887766654
|
Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II. |
| >PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.26 E-value=5.4e-06 Score=81.07 Aligned_cols=90 Identities=27% Similarity=0.264 Sum_probs=63.3
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCc--------ccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSM--------FGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~--------~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
..++++|+||+|||||||...|+..+... .-..+.++|+.++..+..++.|+|.+...+......+.|.+..
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Qvy~~l~i~Takp~~~E~~gv~hhlid~~~~~~~~s~~~f~~~a 82 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADSMQVYRGMDIGTAKPTAEERAGVPHHLIDILDPTESYSVADFQRDA 82 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccceeecccccCCCCCHHHHcCccEEeecccChhhcccHHHHHHHH
Confidence 35789999999999999999998876431 1123456899999999999999998865554444444444432
Q ss_pred HHhccccCCcHHHHHHHHHcCCceEEec
Q 015825 204 SVHGNLYGTSVEAVEAVADAGKRCILDI 231 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~g~~~vldl 231 (399)
...+.+..+.+...++..
T Consensus 83 ----------~~~i~~i~~~gk~pIlvG 100 (307)
T PRK00091 83 ----------LAAIADILARGKLPILVG 100 (307)
T ss_pred ----------HHHHHHHHhCCCCEEEEC
Confidence 345555667787777663
|
|
| >PRK14530 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=3e-05 Score=71.87 Aligned_cols=67 Identities=18% Similarity=0.336 Sum_probs=44.1
Q ss_pred EEEcCCChHHHHH----HHHhCCCCcHHHHHHHHHHHHHH----HHhccCCCcceEEEeCCCHHHHHHHHHHhhc
Q 015825 249 IFICPPSMEELEE----RLRARGTETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 249 ili~~P~lllLDE----pl~~lD~~~~e~i~~~L~~~~~~----l~~~~~~~~~t~Viv~hdleea~~~l~~ii~ 315 (399)
..+.+|+...+.. |+..+..++++.+++|+..+.++ ++++...+.+..|-.+.+++++++.+..++.
T Consensus 138 ~~~~~p~~~~~~~~~~~rl~~R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 212 (215)
T PRK14530 138 VEFNQPEEEGVCDECGGELIQRDDDTEETVRERLDVFEENTEPVIEHYRDQGVLVEVDGEQTPDEVWADIQDAID 212 (215)
T ss_pred cCCCCCcccccCcccCCcccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHh
Confidence 4445555444433 66777788999999999998875 3333222344445566689999988877654
|
|
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.9e-05 Score=69.98 Aligned_cols=28 Identities=25% Similarity=0.395 Sum_probs=25.9
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
+|++++++|||||||||+++.|++++.+
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~ 29 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA 29 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 5899999999999999999999998764
|
|
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.25 E-value=8.5e-07 Score=82.55 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.++++|+||||+||||+++.+.+.
T Consensus 30 ~~~~~l~Gpn~sGKstllr~i~~~ 53 (216)
T cd03284 30 RQILLITGPNMAGKSTYLRQVALI 53 (216)
T ss_pred ceEEEEECCCCCChHHHHHHHHHH
Confidence 389999999999999999999764
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=98.14 E-value=2.2e-05 Score=72.32 Aligned_cols=29 Identities=24% Similarity=0.277 Sum_probs=26.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
.+|++++|+||||||||||++.|++.++.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47899999999999999999999998764
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.14 E-value=4.9e-07 Score=90.61 Aligned_cols=33 Identities=36% Similarity=0.566 Sum_probs=30.5
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
..+|++++|+||||.||||.++.|+|.+.|-.|
T Consensus 97 pr~G~V~GilG~NGiGKsTalkILaGel~PNLG 129 (591)
T COG1245 97 PRPGKVVGILGPNGIGKSTALKILAGELKPNLG 129 (591)
T ss_pred CCCCcEEEEEcCCCccHHHHHHHHhCccccCCC
Confidence 458999999999999999999999999988776
|
|
| >PRK14527 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00012 Score=66.48 Aligned_cols=66 Identities=20% Similarity=0.288 Sum_probs=43.2
Q ss_pred EEEcCCChHHHHHHHHhCC------CCcHHHHHHHHHHHHHHHH----hccCCCcceEEEeCCCHHHHHHHHHHhh
Q 015825 249 IFICPPSMEELEERLRARG------TETEDQILKRLRNAKEEIK----QGKSSGIFDHILYNDKLEECYENLKKHL 314 (399)
Q Consensus 249 ili~~P~lllLDEpl~~lD------~~~~e~i~~~L~~~~~~l~----~~~~~~~~t~Viv~hdleea~~~l~~ii 314 (399)
++..+.+..++-+|+.+|. .++.+.+++++..+.++.. ++...+.+-.|-.+.+.++++..+...+
T Consensus 115 vi~l~~~~~~~~~Rl~~R~~~~~r~dd~~~~~~~R~~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 190 (191)
T PRK14527 115 VVLLEVPDEELIRRIVERARQEGRSDDNEETVRRRQQVYREQTQPLVDYYEARGHLKRVDGLGTPDEVYARILKAL 190 (191)
T ss_pred EEEEECCHHHHHHHHHcCcccCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHhh
Confidence 3444444688888988763 4478899999998887632 3332333444455568999988877654
|
|
| >PRK14526 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00013 Score=67.75 Aligned_cols=54 Identities=19% Similarity=0.247 Sum_probs=37.6
Q ss_pred HHhCCCCcHHHHHHHHHHHHHH----HHhccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 263 LRARGTETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 263 l~~lD~~~~e~i~~~L~~~~~~----l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
+..|..++++.+++||..++++ +++|...+.+..|-.+.+++++++.+.+++..
T Consensus 152 l~~R~DD~~e~i~~Rl~~y~~~t~pv~~~y~~~~~~~~id~~~~~~~V~~~i~~~l~~ 209 (211)
T PRK14526 152 LYQRKDDKEESLKTRLQEYKLQTKPLIEFYSKCNRLNNIDASKDIDEVKKKLIEIISK 209 (211)
T ss_pred eeccCCCCHHHHHHHHHHHHHhhhHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHcc
Confidence 3345667899999999999876 44444333444445556899999998887654
|
|
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.8e-07 Score=83.48 Aligned_cols=37 Identities=19% Similarity=0.188 Sum_probs=28.2
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++..+.......|++++|+||||+||||+++++.+..
T Consensus 17 ~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~ 53 (204)
T cd03282 17 FIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA 53 (204)
T ss_pred EEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3333333344578999999999999999999998753
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK14531 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00022 Score=64.41 Aligned_cols=66 Identities=27% Similarity=0.376 Sum_probs=42.3
Q ss_pred EEEcCCChHHHHHHHHhCC--CCcHHHHHHHHHHHHHH----HHhccCCCcceEEEeCCCHHHHHHHHHHhh
Q 015825 249 IFICPPSMEELEERLRARG--TETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKKHL 314 (399)
Q Consensus 249 ili~~P~lllLDEpl~~lD--~~~~e~i~~~L~~~~~~----l~~~~~~~~~t~Viv~hdleea~~~l~~ii 314 (399)
++..+.+..++-+|+.+|. .++++.+++|+..++.. ++++...+.+..|-.+.+.++++..+.+.+
T Consensus 111 vi~l~~~~~~l~~Rl~~R~r~dD~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 182 (183)
T PRK14531 111 VVLLELDDAVLIERLLARGRADDNEAVIRNRLEVYREKTAPLIDHYRQRGLLQSVEAQGSIEAITERIEKVL 182 (183)
T ss_pred EEEEECCHHHHHHHhhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 3444445688889998663 46788899999988765 333322233333344458888888877654
|
|
| >PRK14732 coaE dephospho-CoA kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.10 E-value=8.2e-06 Score=74.80 Aligned_cols=64 Identities=20% Similarity=0.144 Sum_probs=45.3
Q ss_pred eEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC-CHHHHHHHHHHhh
Q 015825 247 IFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKKHL 314 (399)
Q Consensus 247 ~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h-dleea~~~l~~ii 314 (399)
..+++..| .++.-+|+..|+..+.+++.+++.. ++...+....+|++|.|. ++++...++++++
T Consensus 124 ~vi~V~a~-~e~r~~RL~~R~g~s~e~a~~ri~~---Q~~~~~k~~~aD~vI~N~~~~~~l~~~v~~l~ 188 (196)
T PRK14732 124 ATVTVDSD-PEESILRTISRDGMKKEDVLARIAS---QLPITEKLKRADYIVRNDGNREGLKEECKILY 188 (196)
T ss_pred EEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHH---cCCHHHHHHhCCEEEECCCCHHHHHHHHHHHH
Confidence 34444444 6888899999988888888888865 222112234678999888 8888888887765
|
|
| >PLN02422 dephospho-CoA kinase | Back alignment and domain information |
|---|
Probab=98.10 E-value=1.7e-05 Score=74.46 Aligned_cols=58 Identities=26% Similarity=0.280 Sum_probs=43.6
Q ss_pred ChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC-CHHHHHHHHHHhhc
Q 015825 255 SMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKKHLG 315 (399)
Q Consensus 255 ~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h-dleea~~~l~~ii~ 315 (399)
+.++.-+|+..|+..+.+++.+++.. ++...+....+|++|.|. ++++...++++++.
T Consensus 135 ~~e~ri~RL~~R~g~s~eea~~Ri~~---Q~~~eek~~~AD~VI~N~gs~e~L~~qv~~ll~ 193 (232)
T PLN02422 135 DPETQLERLMARDGLSEEQARNRINA---QMPLDWKRSKADIVIDNSGSLEDLKQQFQKVLE 193 (232)
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHH---cCChhHHHhhCCEEEECCCCHHHHHHHHHHHHH
Confidence 46889999999988888999888854 322222245678898887 89999888888764
|
|
| >PRK00698 tmk thymidylate kinase; Validated | Back alignment and domain information |
|---|
Probab=98.08 E-value=7.3e-05 Score=68.20 Aligned_cols=27 Identities=30% Similarity=0.382 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
+|.+++|.|++||||||+++.|...+.
T Consensus 2 ~~~~I~ieG~~gsGKsT~~~~L~~~l~ 28 (205)
T PRK00698 2 RGMFITIEGIDGAGKSTQIELLKELLE 28 (205)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999987653
|
|
| >PTZ00451 dephospho-CoA kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=1.6e-05 Score=75.21 Aligned_cols=66 Identities=23% Similarity=0.305 Sum_probs=48.0
Q ss_pred eEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC---CHHHHHHHHHHhhcc
Q 015825 247 IFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND---KLEECYENLKKHLGL 316 (399)
Q Consensus 247 ~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h---dleea~~~l~~ii~~ 316 (399)
.++++ .++.++.-+|+..|+..+++++.+++.. ++...+....+|+||.|+ ++++...++++++..
T Consensus 139 ~iv~V-~a~~e~ri~RL~~R~g~s~eea~~Ri~~---Q~~~~ek~~~aD~VI~N~~~g~~~~L~~~v~~~~~~ 207 (244)
T PTZ00451 139 ASVVV-SCSEERQIERLRKRNGFSKEEALQRIGS---QMPLEEKRRLADYIIENDSADDLDELRGSVCDCVAW 207 (244)
T ss_pred eEEEE-ECCHHHHHHHHHHcCCCCHHHHHHHHHh---CCCHHHHHHhCCEEEECCCCCCHHHHHHHHHHHHHH
Confidence 33444 3457888999999988888999999866 222222245679999988 899999988887643
|
|
| >PRK06762 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00012 Score=64.85 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+.+++|.|++||||||+.+.|...+
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4688999999999999999998876
|
|
| >PRK14730 coaE dephospho-CoA kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.06 E-value=1.6e-05 Score=72.90 Aligned_cols=63 Identities=24% Similarity=0.272 Sum_probs=44.6
Q ss_pred EEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC-CHHHHHHHHHHhh
Q 015825 248 FIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKKHL 314 (399)
Q Consensus 248 ~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h-dleea~~~l~~ii 314 (399)
.+++. .+.++.-+|+..|+..+++++.+++.. ++........+|+||.|+ ++++...++++++
T Consensus 129 ii~V~-a~~e~r~~Rl~~R~g~s~e~~~~ri~~---Q~~~~~k~~~aD~vI~N~g~~e~l~~qv~~~l 192 (195)
T PRK14730 129 IWVVD-CSPEQQLQRLIKRDGLTEEEAEARINA---QWPLEEKVKLADVVLDNSGDLEKLYQQVDQLL 192 (195)
T ss_pred EEEEE-CCHHHHHHHHHHcCCCCHHHHHHHHHh---CCCHHHHHhhCCEEEECCCCHHHHHHHHHHHH
Confidence 34444 447888899999987788888888865 222111234568898887 8999888888765
|
|
| >PLN02674 adenylate kinase | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00029 Score=66.71 Aligned_cols=53 Identities=19% Similarity=0.243 Sum_probs=37.4
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHH----HHhccCCCcceEEEeCCCHHHHHHHHHHhh
Q 015825 262 RLRARGTETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKKHL 314 (399)
Q Consensus 262 pl~~lD~~~~e~i~~~L~~~~~~----l~~~~~~~~~t~Viv~hdleea~~~l~~ii 314 (399)
|+..|..++++.+++||..++++ +++|+..+.+..|-.+.+++++++.+.+++
T Consensus 187 ~L~~R~DD~~e~i~~RL~~Y~~~t~pv~~~Y~~~g~l~~Ida~~~~~eV~~~i~~~l 243 (244)
T PLN02674 187 PLIQRKDDTAAVLKSRLEAFHKQTEPVIDYYAKKGVVANLHAEKPPKEVTAEVQKAL 243 (244)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 44556777899999999999876 444443344445555668999998887754
|
|
| >PRK14733 coaE dephospho-CoA kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=1.9e-05 Score=72.85 Aligned_cols=58 Identities=19% Similarity=0.221 Sum_probs=41.7
Q ss_pred ChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC--CHHHHHHHHHHhhc
Q 015825 255 SMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND--KLEECYENLKKHLG 315 (399)
Q Consensus 255 ~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h--dleea~~~l~~ii~ 315 (399)
+.++.-+|+..||..++++..+++.. |+...+....+|+||.|. ++++...++.+++.
T Consensus 138 ~~e~ri~Rl~~Rd~~s~~~a~~ri~~---Q~~~eek~~~aD~VI~N~g~~~~~l~~~~~~~~~ 197 (204)
T PRK14733 138 DLETRIRRLMERDGKNRQQAVAFINL---QISDKEREKIADFVIDNTELTDQELESKLITTIN 197 (204)
T ss_pred CHHHHHHHHHHcCCCCHHHHHHHHHh---CCCHHHHHHhCCEEEECcCCCHHHHHHHHHHHHH
Confidence 36888899999998888999888865 332222234678998876 67777777776554
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.03 E-value=2.2e-06 Score=85.46 Aligned_cols=66 Identities=11% Similarity=0.013 Sum_probs=45.3
Q ss_pred cCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 241 ASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 241 ~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
+.++..+.+|...|.++.||||++.+|....-++-..|.-++. |.+||+||.-..-..|..||-+.
T Consensus 418 RMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWkK-----------TLLIVSHDQgFLD~VCtdIIHLD 483 (807)
T KOG0066|consen 418 RMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWKK-----------TLLIVSHDQGFLDSVCTDIIHLD 483 (807)
T ss_pred eeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhhh-----------eeEEEecccchHHHHHHHHhhhh
Confidence 4445556688899999999999999997765556555555432 77899997654444455555444
|
|
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=98.03 E-value=4.4e-06 Score=77.56 Aligned_cols=54 Identities=11% Similarity=0.036 Sum_probs=34.8
Q ss_pred EEcCCChHHHHHHHHhCCCCcHHHH-HHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHH
Q 015825 250 FICPPSMEELEERLRARGTETEDQI-LKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYE 308 (399)
Q Consensus 250 li~~P~lllLDEpl~~lD~~~~e~i-~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~ 308 (399)
++.+|++.++|||+++.|+.....+ ...++.+.+. . .....+++++|+.+.+..
T Consensus 105 ~~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~-~----~~~~~vli~TH~~~l~~~ 159 (213)
T cd03281 105 LATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKR-G----PECPRVIVSTHFHELFNR 159 (213)
T ss_pred hCCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhc-C----CCCcEEEEEcChHHHHHh
Confidence 4467889999999999997543333 4455554321 0 012367899999876654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=98.01 E-value=2.3e-07 Score=83.70 Aligned_cols=57 Identities=19% Similarity=0.184 Sum_probs=43.0
Q ss_pred cCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 252 CPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 252 ~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
..|++.++|||++++|+.....+.+.+.++... ..++++++|+.+.. ..+++++...
T Consensus 115 ~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~--------g~tiIiiSH~~~~~-~~adrvi~i~ 171 (178)
T cd03239 115 KPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKH--------TSQFIVITLKKEMF-ENADKLIGVL 171 (178)
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--------CCEEEEEECCHHHH-hhCCeEEEEE
Confidence 578889999999999999888888888775421 24789999997654 4566655544
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=2e-05 Score=78.43 Aligned_cols=53 Identities=11% Similarity=0.102 Sum_probs=42.2
Q ss_pred ceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHH
Q 015825 245 DAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLE 304 (399)
Q Consensus 245 ~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdle 304 (399)
..+.++..-|.+.+.||--+.+|+.+...+.+-+.++.++. ..|.+++||..|
T Consensus 517 KLAkllaerpn~~~iDEF~AhLD~~TA~rVArkiselaRe~-------giTlivvThrpE 569 (593)
T COG2401 517 KLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREA-------GITLIVVTHRPE 569 (593)
T ss_pred HHHHHHhcCCCcEEhhhhhhhcCHHHHHHHHHHHHHHHHHh-------CCeEEEEecCHH
Confidence 34456777888999999999999998888888888877664 348889999764
|
|
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=97.98 E-value=8.2e-07 Score=85.30 Aligned_cols=29 Identities=24% Similarity=0.340 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
+.++|+||+|||||||++.|++.+.+..|
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G 140 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGIS 140 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCc
Confidence 57899999999999999999999998777
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00038 Score=62.74 Aligned_cols=31 Identities=35% Similarity=0.594 Sum_probs=25.0
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccCCccccee
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSV 165 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i 165 (399)
.+++|.|++||||||+++.|.+.+.. .|..+
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~-~g~~v 31 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEA-RGYEV 31 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH-cCCeE
Confidence 36899999999999999999988753 44333
|
TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP). |
| >cd01855 YqeH YqeH | Back alignment and domain information |
|---|
Probab=97.95 E-value=2.8e-05 Score=70.50 Aligned_cols=65 Identities=26% Similarity=0.300 Sum_probs=44.5
Q ss_pred cCCCceEEEEeCCCh--H-----HHHHHH-----HHhCC---eEEEeccC-ccC------------CCCcEEEEEcCCCC
Q 015825 93 GSSSDDCLWFLEVDT--P-----YVREQK-----KVVGA---EVVAWSKG-VIG------------NVEKPVVITGPSGV 144 (399)
Q Consensus 93 ~~~~~~~i~~~k~D~--~-----~~~~l~-----~~~g~---~v~~~s~~-~~~------------~~g~~~~l~GpsG~ 144 (399)
..+.+.++++||+|. . .++.+. +..++ +++.+|+. ..+ ..+..++|+|.+|+
T Consensus 59 ~~~~~~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~vSA~~~~gi~eL~~~l~~~l~~~~~~~~~G~~nv 138 (190)
T cd01855 59 GGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILISAKKGWGVEELINAIKKLAKKGGDVYVVGATNV 138 (190)
T ss_pred cCCCcEEEEEEchhcCCCCCCHHHHHHHHHHHHHhhcCCCcccEEEEECCCCCCHHHHHHHHHHHhhcCCcEEEEcCCCC
Confidence 356788999999993 1 122222 22333 57777765 221 24578999999999
Q ss_pred CHHHHHhhhhhcc
Q 015825 145 GKGTLISMLMKEF 157 (399)
Q Consensus 145 GKSTl~~~L~~~~ 157 (399)
|||||+|.|.+..
T Consensus 139 GKStliN~l~~~~ 151 (190)
T cd01855 139 GKSTLINALLKKD 151 (190)
T ss_pred CHHHHHHHHHHhc
Confidence 9999999999854
|
YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. |
| >TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00071 Score=60.64 Aligned_cols=61 Identities=28% Similarity=0.416 Sum_probs=37.6
Q ss_pred CChHHHHHHHHhCCC------CcHHHHHHHHHHHHHH----HHhccCCCcceEEEeCCCHHHHHHHHHHhh
Q 015825 254 PSMEELEERLRARGT------ETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKKHL 314 (399)
Q Consensus 254 P~lllLDEpl~~lD~------~~~e~i~~~L~~~~~~----l~~~~~~~~~t~Viv~hdleea~~~l~~ii 314 (399)
.+...+-+|+..|+. ++.+.+++++..+.+. ++.+...+.+..|-.+.+++++.+.+.+++
T Consensus 112 ~~~~~~~~Rl~~R~~~~~r~dd~~e~~~~r~~~y~~~~~~i~~~~~~~~~~~~Id~~~~~~~v~~~i~~~l 182 (183)
T TIGR01359 112 CPEEVMIKRLLKRGQSSGRVDDNIESIKKRFRTYNEQTLPVIEHYENKGKVKEINAEGSVEEVFEDVEKIF 182 (183)
T ss_pred CCHHHHHHHHhcCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHh
Confidence 345778889887753 3678888888876654 222222223333344558888888776654
|
This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic. |
| >PRK13808 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00054 Score=67.60 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=39.3
Q ss_pred ChHHHHHHHHhC------------CCCcHHHHHHHHHHHHHH----HHhccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 255 SMEELEERLRAR------------GTETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 255 ~lllLDEpl~~l------------D~~~~e~i~~~L~~~~~~----l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
+.+++-+|+.+| ..++.+.+++|+..+... +++|...+.+-.|-.+.++++++..+.++|..
T Consensus 116 p~evll~Rl~~R~~~~~~rg~~~R~DD~~E~i~kRL~~Y~~~t~PLl~~Y~e~~~lv~IDa~~siEEV~eeI~~~L~~ 193 (333)
T PRK13808 116 NEGALLARVETRVAEMRARGEEVRADDTPEVLAKRLASYRAQTEPLVHYYSEKRKLLTVDGMMTIDEVTREIGRVLAA 193 (333)
T ss_pred CHHHHHHHHHcCcccccccCCccCCCCCHHHHHHHHHHHHHHhHHHHHHhhccCcEEEEECCCCHHHHHHHHHHHHHH
Confidence 347777787764 244788999999887765 33433222222233344889999988887654
|
|
| >PRK14528 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00044 Score=62.72 Aligned_cols=59 Identities=24% Similarity=0.237 Sum_probs=41.3
Q ss_pred CChHHHHHHHHhC------CCCcHHHHHHHHHHHHHH----HHhccCCCcceEEEeCCCHHHHHHHHHH
Q 015825 254 PSMEELEERLRAR------GTETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKK 312 (399)
Q Consensus 254 P~lllLDEpl~~l------D~~~~e~i~~~L~~~~~~----l~~~~~~~~~t~Viv~hdleea~~~l~~ 312 (399)
.+...+-+|+.+| ..++.+.+++|+..+..+ +++++..+.+..|-.+.+.++++..+.+
T Consensus 116 ~~~~~~~~Rl~~R~~~~gr~dd~~e~i~~Rl~~y~~~~~pv~~~y~~~~~~~~i~~~~~~~~v~~~~~~ 184 (186)
T PRK14528 116 VPDGELLKRLLGRAEIEGRADDNEATIKNRLDNYNKKTLPLLDFYAAQKKLSQVNGVGSLEEVTSLIQK 184 (186)
T ss_pred CCHHHHHHHHhcCccccCCCCCCHHHHHHHHHHHHHHhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHH
Confidence 3357788888855 356899999999999876 4444434455555566688888877654
|
|
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=97.92 E-value=6.2e-06 Score=68.00 Aligned_cols=25 Identities=40% Similarity=0.449 Sum_probs=22.9
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhh
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLM 154 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~ 154 (399)
..+|+.++|+||||||||||++++.
T Consensus 12 i~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 12 VYGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EcCCEEEEEEcCCCCCHHHHHHHhh
Confidence 3478999999999999999999987
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >TIGR01351 adk adenylate kinases | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00062 Score=62.85 Aligned_cols=49 Identities=33% Similarity=0.431 Sum_probs=32.4
Q ss_pred CCCCcHHHHHHHHHHHHHH----HHhccCCCcceEEEeCCCHHHHHHHHHHhh
Q 015825 266 RGTETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKKHL 314 (399)
Q Consensus 266 lD~~~~e~i~~~L~~~~~~----l~~~~~~~~~t~Viv~hdleea~~~l~~ii 314 (399)
|..++++.+++|+..++++ ++++...+.+..|-.+.++++++..+.+++
T Consensus 157 R~dD~~e~i~~Rl~~y~~~~~~v~~~y~~~~~~~~id~~~~~~~v~~~i~~~l 209 (210)
T TIGR01351 157 REDDTEEVVKKRLEVYKEQTEPLIDYYKKRGILVQIDGNGPIDEVWKRILEAL 209 (210)
T ss_pred CCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHhh
Confidence 4456789999999998876 233332334444445568999988887654
|
Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason. |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=97.90 E-value=1.2e-06 Score=84.54 Aligned_cols=57 Identities=9% Similarity=0.040 Sum_probs=45.5
Q ss_pred CCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 253 PPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 253 ~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
.|++.++|||++++|+.....+.+.+.++.. ..++++++|+++ ....+++++.+..+
T Consensus 192 ~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~---------~~tii~isH~~~-~~~~~d~~~~l~~~ 248 (276)
T cd03241 192 AVPTLIFDEIDTGISGEVAQAVGKKLKELSR---------SHQVLCITHLPQ-VAAMADNHFLVEKE 248 (276)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHhC---------CCEEEEEechHH-HHHhcCcEEEEEEe
Confidence 8999999999999999988888888876532 247899999987 45677777766543
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=97.86 E-value=2.5e-06 Score=79.70 Aligned_cols=63 Identities=6% Similarity=-0.163 Sum_probs=39.5
Q ss_pred EcCCChHHHHHH---HHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeee
Q 015825 251 ICPPSMEELEER---LRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATN 323 (399)
Q Consensus 251 i~~P~lllLDEp---l~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~ 323 (399)
+.+|++.+|||| ++.+|+.... +..++.+.++ ..++++++||. .+....++++.....+.+..
T Consensus 107 ~~~~sLvLLDEp~~gT~~lD~~~~~--~~il~~l~~~-------~~~~vlisTH~-~el~~~~~~~~~i~~g~~~~ 172 (222)
T cd03285 107 ATENSLIIIDELGRGTSTYDGFGLA--WAIAEYIATQ-------IKCFCLFATHF-HELTALADEVPNVKNLHVTA 172 (222)
T ss_pred CCCCeEEEEecCcCCCChHHHHHHH--HHHHHHHHhc-------CCCeEEEEech-HHHHHHhhcCCCeEEEEEEE
Confidence 467889999999 6667754332 2222322211 23578899995 67777788776666665543
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK05480 uridine/cytidine kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00019 Score=66.08 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
++.+++|.|+||||||||++.|.+.+.
T Consensus 5 ~~~iI~I~G~sGsGKTTl~~~l~~~l~ 31 (209)
T PRK05480 5 KPIIIGIAGGSGSGKTTVASTIYEELG 31 (209)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 578999999999999999999999873
|
|
| >COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00028 Score=62.01 Aligned_cols=156 Identities=19% Similarity=0.226 Sum_probs=80.9
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccCCcH
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSV 214 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g~~~ 214 (399)
.+.+.||+||||||+.+.|+..+.. .... -|++|.+...=..| ++.|+..+........+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl----~~vs------------aG~iFR~~A~e~gm----sl~ef~~~AE~~p~iD~ 61 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGL----KLVS------------AGTIFREMARERGM----SLEEFSRYAEEDPEIDK 61 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCC----ceee------------ccHHHHHHHHHcCC----CHHHHHHHHhcCchhhH
Confidence 5789999999999999999987632 1111 13333332111111 55566555544322222
Q ss_pred H---HHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHH-HHHH---HHh
Q 015825 215 E---AVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRN-AKEE---IKQ 287 (399)
Q Consensus 215 ~---~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~-~~~~---l~~ 287 (399)
. .....+. ...++++-.+.+. +.+ ....+.+++..| +.+.-+|++.|+....+...+.+.. -..+ ...
T Consensus 62 ~iD~rq~e~a~-~~nvVlegrLA~W--i~k-~~adlkI~L~Ap-l~vRa~Ria~REgi~~~~a~~~~~~RE~se~kRY~~ 136 (179)
T COG1102 62 EIDRRQKELAK-EGNVVLEGRLAGW--IVR-EYADLKIWLKAP-LEVRAERIAKREGIDVDEALAETVEREESEKKRYKK 136 (179)
T ss_pred HHHHHHHHHHH-cCCeEEhhhhHHH--Hhc-cccceEEEEeCc-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 1 1112223 3345544322221 111 234455777666 8999999999975554433333221 1111 111
Q ss_pred cc-----CCCcceEEEeCC--CHHHHHHHHHHhhc
Q 015825 288 GK-----SSGIFDHILYND--KLEECYENLKKHLG 315 (399)
Q Consensus 288 ~~-----~~~~~t~Viv~h--dleea~~~l~~ii~ 315 (399)
+. .-..+|.|+-|. +++++...+...+.
T Consensus 137 ~YgIDidDlSiyDLVinTs~~~~~~v~~il~~aid 171 (179)
T COG1102 137 IYGIDIDDLSIYDLVINTSKWDPEEVFLILLDAID 171 (179)
T ss_pred HhCCCCccceeeEEEEecccCCHHHHHHHHHHHHH
Confidence 10 123567777665 88888877766544
|
|
| >PRK01184 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.00035 Score=62.92 Aligned_cols=92 Identities=20% Similarity=0.207 Sum_probs=50.5
Q ss_pred CCceEEecc--hhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCC----CCcHHHHHHHHHHHHHHHHhccCCCcceEE
Q 015825 224 GKRCILDID--VQGARSVRASPLDAIFIFICPPSMEELEERLRARG----TETEDQILKRLRNAKEEIKQGKSSGIFDHI 297 (399)
Q Consensus 224 g~~~vldld--~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD----~~~~e~i~~~L~~~~~~l~~~~~~~~~t~V 297 (399)
+..+++|.. +.....++........++....+....-+|+..|+ ..+.+.+.+++.... .++..+....+|++
T Consensus 80 ~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r~~~q~-~~~~~~~~~~ad~v 158 (184)
T PRK01184 80 DEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEERDEREL-SWGIGEVIALADYM 158 (184)
T ss_pred CCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHHHHHHh-ccCHHHHHHhcCEE
Confidence 456677752 22233333332222333333455788889998886 234566666654421 01111112356888
Q ss_pred EeCC-CHHHHHHHHHHhhcc
Q 015825 298 LYND-KLEECYENLKKHLGL 316 (399)
Q Consensus 298 iv~h-dleea~~~l~~ii~~ 316 (399)
|.|+ ++++....+++++..
T Consensus 159 I~N~~~~~~l~~~v~~~~~~ 178 (184)
T PRK01184 159 IVNDSTLEEFRARVRKLLER 178 (184)
T ss_pred EeCCCCHHHHHHHHHHHHHH
Confidence 8776 899999888887653
|
|
| >cd01859 MJ1464 MJ1464 | Back alignment and domain information |
|---|
Probab=97.83 E-value=4.3e-05 Score=66.93 Aligned_cols=66 Identities=23% Similarity=0.219 Sum_probs=46.7
Q ss_pred ccCCCceEEEEeCCCh--H-HHHH---HHHHhCCeEEEeccC-ccC---------------CCCcEEEEEcCCCCCHHHH
Q 015825 92 KGSSSDDCLWFLEVDT--P-YVRE---QKKVVGAEVVAWSKG-VIG---------------NVEKPVVITGPSGVGKGTL 149 (399)
Q Consensus 92 ~~~~~~~~i~~~k~D~--~-~~~~---l~~~~g~~v~~~s~~-~~~---------------~~g~~~~l~GpsG~GKSTl 149 (399)
...+.+.++++||+|. + ..+. +.+..+++++.+|+. ..+ .....++++|.+|+||||+
T Consensus 38 ~~~~~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~iSa~~~~gi~~L~~~l~~~~~~~~~~~~~~~ig~~~~Gkssl 117 (156)
T cd01859 38 LELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERLGTKILRRTIKELAKIDGKEGKVGVVGYPNVGKSSI 117 (156)
T ss_pred HhCCCcEEEEEEhHHhCCHHHHHHHHHHHHhCCCcEEEEEccccccHHHHHHHHHHHHhhcCCCcEEEEECCCCCCHHHH
Confidence 3457888999999993 2 2222 224457788888865 221 1355779999999999999
Q ss_pred Hhhhhhcc
Q 015825 150 ISMLMKEF 157 (399)
Q Consensus 150 ~~~L~~~~ 157 (399)
++.|.+..
T Consensus 118 ~~~l~~~~ 125 (156)
T cd01859 118 INALKGRH 125 (156)
T ss_pred HHHHhCCC
Confidence 99998754
|
This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus. |
| >PLN02459 probable adenylate kinase | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00079 Score=64.22 Aligned_cols=57 Identities=28% Similarity=0.342 Sum_probs=40.5
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHH----HHhccCCCcceEEEeCCCHHHHHHHHHHhhcccC
Q 015825 262 RLRARGTETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKKHLGLDG 318 (399)
Q Consensus 262 pl~~lD~~~~e~i~~~L~~~~~~----l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~ 318 (399)
++..|..++++.+++||..++++ +++|...+.+..|-.+.+++++++.+.+++.+..
T Consensus 193 ~L~~R~DD~~e~i~kRL~~Y~~~t~pv~~~Y~~~g~l~~id~~~~~~eV~~~i~~~l~~~~ 253 (261)
T PLN02459 193 KLITRADDTEEVVKARLRVYKEESQPVEDFYRKRGKLLEFELPGGIPETWPRLLQALNLDD 253 (261)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHhHHHHHHHHhcCCeEEEeCCCCHHHHHHHHHHHhchhh
Confidence 45566677899999999999876 3444433444444455689999999998887653
|
|
| >PRK11545 gntK gluconate kinase 1; Provisional | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00025 Score=63.01 Aligned_cols=20 Identities=30% Similarity=0.473 Sum_probs=18.2
Q ss_pred EcCCCCCHHHHHhhhhhccC
Q 015825 139 TGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 139 ~GpsG~GKSTl~~~L~~~~~ 158 (399)
+|||||||||+++.|.+.+.
T Consensus 1 ~G~sGsGKSTla~~la~~l~ 20 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLH 20 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhC
Confidence 69999999999999998873
|
|
| >PRK14734 coaE dephospho-CoA kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=9.3e-05 Score=68.04 Aligned_cols=63 Identities=16% Similarity=0.161 Sum_probs=43.3
Q ss_pred EEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC-CHHHHHHHHHHhh
Q 015825 248 FIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKKHL 314 (399)
Q Consensus 248 ~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h-dleea~~~l~~ii 314 (399)
.+++.. +.+..-+|+..++..+.+++.+++....... +....++++|.|. ++++...++++++
T Consensus 129 vi~V~a-~~e~ri~Rl~~R~g~s~e~~~~ri~~Q~~~~---~k~~~ad~vI~N~g~~e~l~~~v~~~~ 192 (200)
T PRK14734 129 VVVVDV-DVEERVRRLVEKRGLDEDDARRRIAAQIPDD---VRLKAADIVVDNNGTREQLLAQVDGLI 192 (200)
T ss_pred EEEEEC-CHHHHHHHHHHcCCCCHHHHHHHHHhcCCHH---HHHHhCCEEEECcCCHHHHHHHHHHHH
Confidence 444444 4677889999887777888888887533221 1123568888887 8888888887765
|
|
| >PRK03846 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00018 Score=65.78 Aligned_cols=29 Identities=28% Similarity=0.320 Sum_probs=25.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
.++.+++|+|+|||||||+++.|.+.+.+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~ 50 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHE 50 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999999997644
|
|
| >PRK02496 adk adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00086 Score=60.39 Aligned_cols=66 Identities=29% Similarity=0.289 Sum_probs=41.8
Q ss_pred EEEcCCChHHHHHHHHhCC--CCcHHHHHHHHHHHHHH----HHhccCCCcceEEEeCCCHHHHHHHHHHhh
Q 015825 249 IFICPPSMEELEERLRARG--TETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKKHL 314 (399)
Q Consensus 249 ili~~P~lllLDEpl~~lD--~~~~e~i~~~L~~~~~~----l~~~~~~~~~t~Viv~hdleea~~~l~~ii 314 (399)
++..+.+...+-+|+..|. .++++.+++++..+... ++.++..+.+..|-.+.+++++...+.+.+
T Consensus 111 vi~l~~~~~~~~~Rl~~R~~~dd~~~~~~~r~~~y~~~~~~v~~~~~~~~~~~~Ida~~~~~~V~~~i~~~l 182 (184)
T PRK02496 111 VVNLDVPDDVVVERLLARGRKDDTEEVIRRRLEVYREQTAPLIDYYRDRQKLLTIDGNQSVEAVTTELKAAL 182 (184)
T ss_pred EEEEeCCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHh
Confidence 3334445678889988664 44678888898888763 223222233334445558999988887654
|
|
| >PLN02200 adenylate kinase family protein | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.0018 Score=61.05 Aligned_cols=61 Identities=23% Similarity=0.256 Sum_probs=39.5
Q ss_pred hHHHHHHHHhC----CCCcHHHHHHHHHHHHHH----HHhccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 256 MEELEERLRAR----GTETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 256 lllLDEpl~~l----D~~~~e~i~~~L~~~~~~----l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
..++-+|+.+| ..++.+.+++++..+.+. +++++..+.+-.|-.+.+++++++.+.+++..
T Consensus 156 ~e~~~~Rl~~R~~~r~dd~~e~~~~Rl~~y~~~~~pv~~~y~~~~~~~~IDa~~~~eeV~~~v~~~l~~ 224 (234)
T PLN02200 156 EEEMVKRVLNRNQGRVDDNIDTIKKRLKVFNALNLPVIDYYSKKGKLYTINAVGTVDEIFEQVRPIFAA 224 (234)
T ss_pred HHHHHHHHHcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 46777788766 245678888998887765 33332223334444556899999888776543
|
|
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=97.78 E-value=2.3e-05 Score=73.21 Aligned_cols=37 Identities=24% Similarity=0.220 Sum_probs=29.4
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhh-ccCCccccee
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMK-EFPSMFGFSV 165 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~-~~~~~~g~~i 165 (399)
....|++++|+||||+||||+++.+.+ .+.+..|.-+
T Consensus 27 ~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v 64 (222)
T cd03287 27 SAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFV 64 (222)
T ss_pred EecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEE
Confidence 345789999999999999999999998 4555566333
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK14532 adenylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.0012 Score=59.69 Aligned_cols=60 Identities=17% Similarity=0.170 Sum_probs=37.4
Q ss_pred ChHHHHHHHHhCC------CCcHHHHHHHHHHHHHHH----HhccCCCcceEEEeCCCHHHHHHHHHHhh
Q 015825 255 SMEELEERLRARG------TETEDQILKRLRNAKEEI----KQGKSSGIFDHILYNDKLEECYENLKKHL 314 (399)
Q Consensus 255 ~lllLDEpl~~lD------~~~~e~i~~~L~~~~~~l----~~~~~~~~~t~Viv~hdleea~~~l~~ii 314 (399)
+...+-+|+.+|. .++.+.+++++..+..+. ..++..+.+..+-.+.+++++++.+...+
T Consensus 116 ~~~~~~~Rl~~R~~~~~r~dd~~~~~~~Rl~~~~~~~~~i~~~y~~~~~~~~id~~~~~eev~~~I~~~l 185 (188)
T PRK14532 116 DDEALIERIVKRFEEQGRPDDNPEVFVTRLDAYNAQTAPLLPYYAGQGKLTEVDGMGSIEAVAASIDAAL 185 (188)
T ss_pred CHHHHHHHHHcCcCcCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHH
Confidence 3577778887652 345678888998887653 33322223222334568999988887655
|
|
| >KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00015 Score=65.82 Aligned_cols=88 Identities=25% Similarity=0.312 Sum_probs=55.1
Q ss_pred CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC-C
Q 015825 224 GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-K 302 (399)
Q Consensus 224 g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h-d 302 (399)
...+++|+.. -++.-.........+..|+- +.--+|+..||..+++..+.|+.. +|...+.....++|+.|. +
T Consensus 107 ~r~ivlDiPL-LFE~~~~~~~~~tvvV~cd~--~~Ql~Rl~~Rd~lse~dAe~Rl~s---Qmp~~~k~~~a~~Vi~Nng~ 180 (225)
T KOG3220|consen 107 YRVIVLDIPL-LFEAKLLKICHKTVVVTCDE--ELQLERLVERDELSEEDAENRLQS---QMPLEKKCELADVVIDNNGS 180 (225)
T ss_pred CeEEEEechH-HHHHhHHhheeeEEEEEECc--HHHHHHHHHhccccHHHHHHHHHh---cCCHHHHHHhhheeecCCCC
Confidence 4567788733 23321222223334445543 666789999998899998888875 322222233457887766 8
Q ss_pred HHHHHHHHHHhhccc
Q 015825 303 LEECYENLKKHLGLD 317 (399)
Q Consensus 303 leea~~~l~~ii~~~ 317 (399)
+++..+++.+++..-
T Consensus 181 ~~~l~~qv~~v~~~~ 195 (225)
T KOG3220|consen 181 LEDLYEQVEKVLALL 195 (225)
T ss_pred hHHHHHHHHHHHHHh
Confidence 999999888876654
|
|
| >cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain | Back alignment and domain information |
|---|
Probab=97.77 E-value=3.6e-05 Score=57.85 Aligned_cols=33 Identities=15% Similarity=0.223 Sum_probs=27.8
Q ss_pred CCCceeccEEEEEe-cCCeeEEEEeeeCCCceEEc
Q 015825 30 ETTTVIGDKTYVIA-GSDESIGVKIYDRSTGNWLI 63 (399)
Q Consensus 30 ~~~~~vGD~v~~~~-~~~~~~i~~i~~r~~~~l~r 63 (399)
...|+|||||.++. +++.++|++|+|| +|.|.|
T Consensus 35 ~~~~~VGD~V~~~~~~~~~~~I~~vl~R-~s~l~R 68 (68)
T cd04466 35 KNPPAVGDRVEFEPEDDGEGVIEEILPR-KNLLIR 68 (68)
T ss_pred CCCCCCCcEEEEEECCCCcEEEEEEecc-ceEEEC
Confidence 35699999999986 4457899999999 899987
|
Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of three domains: an N-terminal S1 domain, a central GTPase domain, and a C-terminal zinc finger domain. This N-terminal S1 domain binds ssRNA. The central GTPase domain contains nucleotide-binding signature motifs: G1 (walker A), G3 (walker B) and G4 motifs. Experiments show that the bacterial YloQ and YjeQ proteins have low intrinsic GTPase activity. The C-terminal zinc-finger domain has structural similarity to a portion of the DNA-repair protein Rad51. This suggests a possible role for this GTPase as a regulator of translation, perhaps as a translation initiation factor. This family is classified based on the N-terminal S1 domain. |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=97.77 E-value=1.2e-05 Score=72.91 Aligned_cols=52 Identities=17% Similarity=-0.053 Sum_probs=34.7
Q ss_pred cCCChHHHHHHHHhCCCCcHHHHHHH-HHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHH
Q 015825 252 CPPSMEELEERLRARGTETEDQILKR-LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLK 311 (399)
Q Consensus 252 ~~P~lllLDEpl~~lD~~~~e~i~~~-L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~ 311 (399)
.+|++.++|||+++.|+.....+... ++.+.++ ..+++++++|+.+ ....++
T Consensus 77 ~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~-------~~~~iii~TH~~~-l~~~~~ 129 (185)
T smart00534 77 TENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEK-------IGALTLFATHYHE-LTKLAD 129 (185)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhc-------CCCeEEEEecHHH-HHHHhh
Confidence 46889999999999998866665433 3433221 1347889999884 444443
|
|
| >TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.00052 Score=60.46 Aligned_cols=23 Identities=35% Similarity=0.553 Sum_probs=20.4
Q ss_pred EEEEcCCCCCHHHHHhhhhhccC
Q 015825 136 VVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
++++||+||||||+.+.|.+.+.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~ 23 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG 23 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC
Confidence 47899999999999999998763
|
This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases. |
| >PRK13796 GTPase YqeH; Provisional | Back alignment and domain information |
|---|
Probab=97.75 E-value=7e-05 Score=75.21 Aligned_cols=95 Identities=23% Similarity=0.263 Sum_probs=61.2
Q ss_pred CCceEEEEeCCCh-------HHHH----HHHHHhCC---eEEEeccC-ccC-----------CCCcEEEEEcCCCCCHHH
Q 015825 95 SSDDCLWFLEVDT-------PYVR----EQKKVVGA---EVVAWSKG-VIG-----------NVEKPVVITGPSGVGKGT 148 (399)
Q Consensus 95 ~~~~~i~~~k~D~-------~~~~----~l~~~~g~---~v~~~s~~-~~~-----------~~g~~~~l~GpsG~GKST 148 (399)
+.+.++++||+|. +.++ ...+..|+ .++.+|+. ..+ .+++.+.++|.+++||||
T Consensus 96 ~kpviLViNK~DLl~~~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk~g~gI~eL~~~I~~~~~~~~v~vvG~~NvGKST 175 (365)
T PRK13796 96 NNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLISAQKGHGIDELLEAIEKYREGRDVYVVGVTNVGKST 175 (365)
T ss_pred CCCEEEEEEchhhCCCccCHHHHHHHHHHHHHhcCCCcCcEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEcCCCCcHHH
Confidence 5678899999993 1222 22355676 57777765 111 267789999999999999
Q ss_pred HHhhhhhccC-----CcccceeeecCCCccccccCCeeEEecChHHH
Q 015825 149 LISMLMKEFP-----SMFGFSVSHTTRAPRAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 149 l~~~L~~~~~-----~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf 190 (399)
|+|.|.+... ...+ ..++||+........+..+++..+.++
T Consensus 176 LiN~L~~~~~~~~~~~~~s-~~pGTT~~~~~~~l~~~~~l~DTPGi~ 221 (365)
T PRK13796 176 LINRIIKEITGEKDVITTS-RFPGTTLDKIEIPLDDGSFLYDTPGII 221 (365)
T ss_pred HHHHHHhhccCccceEEec-CCCCccceeEEEEcCCCcEEEECCCcc
Confidence 9999986531 1122 345677766554443334666666654
|
|
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=97.75 E-value=4.9e-05 Score=68.90 Aligned_cols=35 Identities=29% Similarity=0.485 Sum_probs=30.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceee
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS 166 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~ 166 (399)
..|+.++|+||+||||||++++|+++.++..+ .+.
T Consensus 23 ~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~-~i~ 57 (186)
T cd01130 23 EARKNILISGGTGSGKTTLLNALLAFIPPDER-IIT 57 (186)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhcCCCCC-EEE
Confidence 36899999999999999999999999987666 443
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.00012 Score=62.62 Aligned_cols=24 Identities=38% Similarity=0.667 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccC
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
++.++||+||||||+++.|.....
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC
Confidence 478999999999999999987653
|
... |
| >PRK00279 adk adenylate kinase; Reviewed | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0018 Score=59.94 Aligned_cols=50 Identities=26% Similarity=0.425 Sum_probs=32.4
Q ss_pred CCCCcHHHHHHHHHHHHHH----HHhccCCCcceEEEeCCCHHHHHHHHHHhhc
Q 015825 266 RGTETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 266 lD~~~~e~i~~~L~~~~~~----l~~~~~~~~~t~Viv~hdleea~~~l~~ii~ 315 (399)
+..++++.+++|+..++.+ ++.+...+.+-.|-.+.+.+++++.+..++.
T Consensus 160 r~dd~~~~i~~Rl~~y~~~~~~i~~~y~~~~~~~~id~~~~~~~v~~~i~~~l~ 213 (215)
T PRK00279 160 RADDNEETVRKRLEVYHKQTAPLIDYYKKKGKLKKIDGTGSIDEVFADILKALG 213 (215)
T ss_pred CCCCCHHHHHHHHHHHHHhhHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 3456789999999998865 2233222233334445589999988877653
|
|
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=97.71 E-value=9.8e-05 Score=75.63 Aligned_cols=178 Identities=17% Similarity=0.150 Sum_probs=93.1
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeee---cCCCcc---------ccccCCeeEEecChHH-HHHHHh
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSH---TTRAPR---------AMEKDGVHYHFTERSV-MEKAIK 195 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~---ttr~~~---------~~~~~~i~yvfq~~~l-f~~~~~ 195 (399)
...+|+.++|+|+||+|||||+++|++...+..| .+.. ..+... ....+.+.++.++..- ..+...
T Consensus 154 ~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~g-vI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~~~~~r~~~ 232 (438)
T PRK07721 154 TVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLN-VIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQPALMRIKG 232 (438)
T ss_pred eecCCcEEEEECCCCCCHHHHHHHHhcccCCCeE-EEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCCCHHHHHHH
Confidence 3458999999999999999999999999888666 4432 111111 0112234555443211 111111
Q ss_pred hhhhHHHHHHhccccCCcHHHHHHHHHcCCceEEecchh--hHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 196 DGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQ--GARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 196 ~~~~~E~~~~~~~~~g~~~~~i~~~~~~g~~~vldld~~--g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
........+|. ...|+.+++-+|-- -++.++. ++..+-.|+ -+.++|+.....
T Consensus 233 ~~~a~~iAEyf--------------r~~g~~Vll~~Dsltr~A~A~rE-----isl~~ge~P------~~~G~dp~~~~~ 287 (438)
T PRK07721 233 AYTATAIAEYF--------------RDQGLNVMLMMDSVTRVAMAQRE-----IGLAVGEPP------TTKGYTPSVFAI 287 (438)
T ss_pred HHHHHHHHHHH--------------HHCCCcEEEEEeChHHHHHHHHH-----HHHhcCCCC------ccccCCHHHHHH
Confidence 10111111111 13455555444321 0111110 001111221 134777767677
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
+.+.++++... ....--..+++++.+||+++ ..++++..+.+|.++..+...+--..|+
T Consensus 288 l~~ller~~~~-~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~dG~Ivls~~la~~g~~PA 346 (438)
T PRK07721 288 LPKLLERTGTN-ASGSITAFYTVLVDGDDMNE--PIADTVRGILDGHFVLDRQLANKGQYPA 346 (438)
T ss_pred HHHHHHHhcCC-CCCCeeeEEEEEEECCCCCc--hhhhhEEEecCEEEEEeccHHHCCCCCc
Confidence 77777765320 01000112577889999986 5688999999999988766554444444
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=97.70 E-value=2e-05 Score=72.76 Aligned_cols=34 Identities=18% Similarity=0.062 Sum_probs=30.2
Q ss_pred EEEcCCChHHHHHHH-----HhCCCCcHHHHHHHHHHHH
Q 015825 249 IFICPPSMEELEERL-----RARGTETEDQILKRLRNAK 282 (399)
Q Consensus 249 ili~~P~lllLDEpl-----~~lD~~~~e~i~~~L~~~~ 282 (399)
.++.+|++.++|||+ .++|+...+.+.+.++++.
T Consensus 166 ~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 166 RLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 567789999999999 9999999999999888864
|
|
| >PRK12338 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00042 Score=67.96 Aligned_cols=26 Identities=31% Similarity=0.487 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
..++++.|+|||||||+.+.|+..+.
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~ 29 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLN 29 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCC
Confidence 46889999999999999999998764
|
|
| >COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00052 Score=61.97 Aligned_cols=65 Identities=23% Similarity=0.229 Sum_probs=38.4
Q ss_pred eEEEEcCCChHHHHHHHHhCC---CCcHHHHHHHHHHHHHHHHhccCCCcceE-EEeCCCHHHHHHHHHHh
Q 015825 247 IFIFICPPSMEELEERLRARG---TETEDQILKRLRNAKEEIKQGKSSGIFDH-ILYNDKLEECYENLKKH 313 (399)
Q Consensus 247 ~~ili~~P~lllLDEpl~~lD---~~~~e~i~~~L~~~~~~l~~~~~~~~~t~-Viv~hdleea~~~l~~i 313 (399)
-.+.-++.+.+.+-+|+.++. .++.+.+.+++..+..+....- ..+.+ |-....+++.++.+.+.
T Consensus 108 d~v~~~~~~~~~~~~r~~~r~~r~dd~~~~~~~R~~~y~~~~~pli--~~y~~~id~~~~i~~v~~~i~~~ 176 (178)
T COG0563 108 DMVIELDVPEELLLERLLGRRVREDDNEETVKKRLKVYHEQTAPLI--EYYSVTIDGSGEIEEVLADILKA 176 (178)
T ss_pred ceEEeeeCCHHHHHHHHhCccccccCCHHHHHHHHHHHHhcccchh--hhheeeccCCCCHHHHHHHHHHh
Confidence 334444444588889998884 5788999999998876522100 01111 11234777777766553
|
|
| >TIGR00152 dephospho-CoA kinase | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00011 Score=66.63 Aligned_cols=59 Identities=25% Similarity=0.287 Sum_probs=41.1
Q ss_pred EEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC-CHHHHHHHHH
Q 015825 249 IFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLK 311 (399)
Q Consensus 249 ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h-dleea~~~l~ 311 (399)
+++. .+..+.-+|+..|+..+.+++.+++..... ..+....+|++|.|+ ++++...+++
T Consensus 128 v~V~-~~~~~~~~Rl~~R~~~s~~~~~~r~~~q~~---~~~~~~~ad~vI~N~~~~e~l~~~~~ 187 (188)
T TIGR00152 128 IVVD-VSPQLQLERLMQRDNLTEEEVQKRLASQMD---IEERLARADDVIDNSATLADLVKQLE 187 (188)
T ss_pred EEEE-CCHHHHHHHHHHcCCCCHHHHHHHHHhcCC---HHHHHHhCCEEEECCCCHHHHHHHHh
Confidence 4444 457999999999988888888888876322 111234578898887 7877776654
|
This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases. |
| >PRK13974 thymidylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0019 Score=59.73 Aligned_cols=27 Identities=41% Similarity=0.508 Sum_probs=25.2
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
+|++++|.|+.||||||+++.|.+.++
T Consensus 2 ~g~~i~~eG~dGsGKsT~~~~l~~~l~ 28 (212)
T PRK13974 2 KGKFIVLEGIDGCGKTTQIDHLSKWLP 28 (212)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999998875
|
|
| >TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00018 Score=71.16 Aligned_cols=27 Identities=37% Similarity=0.508 Sum_probs=24.5
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
++.++|+|++|+|||||++.|+..+..
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~ 188 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNT 188 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCC
Confidence 789999999999999999999997643
|
E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity. |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=97.64 E-value=2.1e-05 Score=86.02 Aligned_cols=46 Identities=9% Similarity=-0.024 Sum_probs=33.9
Q ss_pred cCCChHHHHHHHHhCCCCcHHHHH-HHHHHHHHHHHhccCCCcceEEEeCCCHHH
Q 015825 252 CPPSMEELEERLRARGTETEDQIL-KRLRNAKEEIKQGKSSGIFDHILYNDKLEE 305 (399)
Q Consensus 252 ~~P~lllLDEpl~~lD~~~~e~i~-~~L~~~~~~l~~~~~~~~~t~Viv~hdlee 305 (399)
.+|++.++|||.++.|+.....+. ..+..+.. ..+.++++||+.+.
T Consensus 401 ~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~--------~g~~viitTH~~eL 447 (771)
T TIGR01069 401 TENSLVLFDELGAGTDPDEGSALAISILEYLLK--------QNAQVLITTHYKEL 447 (771)
T ss_pred CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHh--------cCCEEEEECChHHH
Confidence 468899999999999998877774 44554432 24578899998754
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >PRK05541 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=7.9e-05 Score=66.69 Aligned_cols=28 Identities=29% Similarity=0.354 Sum_probs=25.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+|.+++|.|++||||||+++.|...+.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4788999999999999999999988764
|
|
| >PRK13973 thymidylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0031 Score=58.40 Aligned_cols=34 Identities=26% Similarity=0.472 Sum_probs=27.6
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCcccceee
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS 166 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~ 166 (399)
+|.+++|-|+.||||||+++.|...+.. .|..+.
T Consensus 2 ~g~~IviEG~dGsGKtTq~~~l~~~l~~-~g~~~~ 35 (213)
T PRK13973 2 RGRFITFEGGEGAGKSTQIRLLAERLRA-AGYDVL 35 (213)
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHH-CCCeEE
Confidence 5889999999999999999999988753 343443
|
|
| >PRK08233 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.0021 Score=57.30 Aligned_cols=27 Identities=33% Similarity=0.377 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
++.+++|.|++||||||+.+.|+..++
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCC
Confidence 357899999999999999999998764
|
|
| >PRK00889 adenylylsulfate kinase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00046 Score=61.64 Aligned_cols=28 Identities=32% Similarity=0.387 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
+|++++|+|++||||||+.+.|++.+..
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~ 30 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLRE 30 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999999998754
|
|
| >PLN02318 phosphoribulokinase/uridine kinase | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.00064 Score=71.46 Aligned_cols=55 Identities=18% Similarity=0.303 Sum_probs=35.7
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHH
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~ 193 (399)
.+++|.||||||||||+++|++.++ ..+ .++...-.... ...++.|+++..++..
T Consensus 66 iIIGIaGpSGSGKTTLAk~LaglLp-~vg-vIsmDdy~~~~---~~i~~nfD~P~a~D~d 120 (656)
T PLN02318 66 ILVGVAGPSGAGKTVFTEKVLNFMP-SIA-VISMDNYNDSS---RIIDGNFDDPRLTDYD 120 (656)
T ss_pred EEEEEECCCCCcHHHHHHHHHhhCC-CcE-EEEEcceecch---hhhCccCCChhhcchh
Confidence 5899999999999999999999874 233 34332211111 1245667777666543
|
|
| >cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2 | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00014 Score=65.50 Aligned_cols=51 Identities=22% Similarity=0.240 Sum_probs=34.1
Q ss_pred eEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC
Q 015825 247 IFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND 301 (399)
Q Consensus 247 ~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h 301 (399)
..+++..| .+..-+|+..||..+.+++.+++..- +...+....+|+||.|.
T Consensus 124 ~vv~V~a~-~~~ri~Rl~~Rd~~s~~~~~~r~~~Q---~~~~~~~~~aD~vI~N~ 174 (179)
T cd02022 124 RVIVVDAP-PEIQIERLMKRDGLSEEEAEARIASQ---MPLEEKRARADFVIDNS 174 (179)
T ss_pred eEEEEECC-HHHHHHHHHHcCCCCHHHHHHHHHhc---CCHHHHHHhCCEEEECc
Confidence 34444444 68888999999888888888888762 22111234568888876
|
7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 399 | ||||
| 1lvg_A | 198 | Crystal Structure Of Mouse Guanylate Kinase In Comp | 2e-49 | ||
| 4f4j_A | 202 | Conversion Of The Enzyme Guanylate Kinase Into A Mi | 1e-45 | ||
| 1gky_A | 187 | Refined Structure Of The Complex Between Guanylate | 1e-45 | ||
| 1ex6_A | 186 | Crystal Structure Of Unliganded Form Of Guanylate K | 1e-45 | ||
| 1z6g_A | 218 | Crystal Structure Of Guanylate Kinase From Plasmodi | 1e-35 | ||
| 2j41_A | 207 | Crystal Structure Of Staphylococcus Aureus Guanylat | 3e-35 | ||
| 1s4q_A | 228 | Crystal Structure Of Guanylate Kinase From Mycobact | 8e-34 | ||
| 1znw_A | 207 | Crystal Structure Of Unliganded Form Of Mycobacteri | 8e-34 | ||
| 2qor_A | 204 | Crystal Structure Of Plasmodium Vivax Guanylate Kin | 1e-33 | ||
| 3tau_A | 208 | Crystal Structure Of A Putative Guanylate Monophosp | 4e-33 | ||
| 1z8f_A | 228 | Guanylate Kinase Double Mutant A58c, T157c From Myc | 1e-32 | ||
| 2an9_A | 207 | Crystal Structure Of Oligomeric E.Coli Guanylate Ki | 6e-30 | ||
| 1s96_A | 219 | The 2.0 A X-Ray Structure Of Guanylate Kinase From | 1e-29 | ||
| 3tr0_A | 205 | Structure Of Guanylate Kinase (Gmk) From Coxiella B | 7e-27 | ||
| 3uat_A | 296 | Guanylate Kinase Domains Of The Maguk Family Scaffo | 9e-26 | ||
| 2xkx_A | 721 | Single Particle Analysis Of Psd-95 In Negative Stai | 3e-25 | ||
| 1jxm_A | 301 | Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Frag | 7e-25 | ||
| 1kjw_A | 295 | Sh3-Guanylate Kinase Module From Psd-95 Length = 29 | 9e-25 | ||
| 3ney_A | 197 | Crystal Structure Of The Kinase Domain Of Mpp1P55 L | 4e-23 | ||
| 3tvt_A | 292 | Structural Basis For Discs Large Interaction With P | 3e-22 | ||
| 3lnc_A | 231 | Crystal Structure Of Guanylate Kinase From Anaplasm | 5e-21 | ||
| 1kgd_A | 180 | Crystal Structure Of The Guanylate Kinase-Like Doma | 9e-19 |
| >pdb|1LVG|A Chain A, Crystal Structure Of Mouse Guanylate Kinase In Complex With Gmp And Adp Length = 198 | Back alignment and structure |
|
| >pdb|4F4J|A Chain A, Conversion Of The Enzyme Guanylate Kinase Into A Mitotic Spindle Orienting Protein By A Single Mutation That Inhibits Gmp- Induced Closing Length = 202 | Back alignment and structure |
|
| >pdb|1GKY|A Chain A, Refined Structure Of The Complex Between Guanylate Kinase And Its Substrate Gmp At 2.0 Angstroms Resolution Length = 187 | Back alignment and structure |
|
| >pdb|1EX6|A Chain A, Crystal Structure Of Unliganded Form Of Guanylate Kinase From Yeast Length = 186 | Back alignment and structure |
|
| >pdb|1Z6G|A Chain A, Crystal Structure Of Guanylate Kinase From Plasmodium Falciparum Length = 218 | Back alignment and structure |
|
| >pdb|2J41|A Chain A, Crystal Structure Of Staphylococcus Aureus Guanylate Monophosphate Kinase Length = 207 | Back alignment and structure |
|
| >pdb|1S4Q|A Chain A, Crystal Structure Of Guanylate Kinase From Mycobacterium Tuberculosis (Rv1389) Length = 228 | Back alignment and structure |
|
| >pdb|1ZNW|A Chain A, Crystal Structure Of Unliganded Form Of Mycobacterium Tuberculosis Guanylate Kinase Length = 207 | Back alignment and structure |
|
| >pdb|2QOR|A Chain A, Crystal Structure Of Plasmodium Vivax Guanylate Kinase Length = 204 | Back alignment and structure |
|
| >pdb|3TAU|A Chain A, Crystal Structure Of A Putative Guanylate Monophosphaste Kinase From Listeria Monocytogenes Egd-E Length = 208 | Back alignment and structure |
|
| >pdb|1Z8F|A Chain A, Guanylate Kinase Double Mutant A58c, T157c From Mycobacterium Tuberculosis (Rv1389) Length = 228 | Back alignment and structure |
|
| >pdb|2AN9|A Chain A, Crystal Structure Of Oligomeric E.Coli Guanylate Kinase In Complex With Gdp Length = 207 | Back alignment and structure |
|
| >pdb|1S96|A Chain A, The 2.0 A X-Ray Structure Of Guanylate Kinase From E.Coli Length = 219 | Back alignment and structure |
|
| >pdb|3TR0|A Chain A, Structure Of Guanylate Kinase (Gmk) From Coxiella Burnetii Length = 205 | Back alignment and structure |
|
| >pdb|3UAT|A Chain A, Guanylate Kinase Domains Of The Maguk Family Scaffold Proteins As Specific Phospho-Protein Binding Modules Length = 296 | Back alignment and structure |
|
| >pdb|2XKX|A Chain A, Single Particle Analysis Of Psd-95 In Negative Stain Length = 721 | Back alignment and structure |
|
| >pdb|1JXM|A Chain A, Crystal Structure Of The Gmp Bound Sh3-Hook-Gk Fragment Of Psd-95 Length = 301 | Back alignment and structure |
|
| >pdb|1KJW|A Chain A, Sh3-Guanylate Kinase Module From Psd-95 Length = 295 | Back alignment and structure |
|
| >pdb|3NEY|A Chain A, Crystal Structure Of The Kinase Domain Of Mpp1P55 Length = 197 | Back alignment and structure |
|
| >pdb|3TVT|A Chain A, Structural Basis For Discs Large Interaction With Pins Length = 292 | Back alignment and structure |
|
| >pdb|3LNC|A Chain A, Crystal Structure Of Guanylate Kinase From Anaplasma Phagocytophilum Length = 231 | Back alignment and structure |
|
| >pdb|1KGD|A Chain A, Crystal Structure Of The Guanylate Kinase-Like Domain Of Human Cask Length = 180 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 399 | |||
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 1e-104 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 1e-101 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 3e-99 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 5e-99 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 2e-97 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 8e-97 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 3e-94 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 6e-89 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 8e-89 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 3e-82 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 2e-81 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 2e-80 | |
| 3tvt_A | 292 | Disks large 1 tumor suppressor protein; DLG, SRC-h | 4e-80 | |
| 1kjw_A | 295 | Postsynaptic density protein 95; protein-protein i | 3e-77 | |
| 2xkx_A | 721 | Disks large homolog 4; structural protein, scaffol | 7e-55 | |
| 4dey_A | 337 | Voltage-dependent L-type calcium channel subunit; | 4e-47 | |
| 3shw_A | 468 | Tight junction protein ZO-1; PDZ-SH3-GUK supramodu | 2e-25 | |
| 3kfv_A | 308 | Tight junction protein ZO-3; structural genomics c | 6e-25 | |
| 3tsz_A | 391 | Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol | 9e-23 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-11 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-04 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 8e-07 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 8e-07 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 1e-05 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 4e-05 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 5e-05 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 6e-04 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 9e-04 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 1e-04 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 2e-04 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 3e-04 | |
| 1sxj_A | 516 | Activator 1 95 kDa subunit; clamp loader, processi | 3e-04 | |
| 2dcn_A | 311 | Hypothetical fructokinase; 2-keto-3-deoxygluconate | 3e-04 |
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 Length = 198 | Back alignment and structure |
|---|
Score = 304 bits (782), Expect = e-104
Identities = 89/179 (49%), Positives = 125/179 (69%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
+PVV++GPSG GK TL+ L +E S+FGFSVSHTTR PR E+DG Y+F R +M++
Sbjct: 5 RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRD 64
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICP 253
I G F+E A GNLYGTS EAV AV + C+LD+D+QG RS++ + L I+IF+ P
Sbjct: 65 IAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQP 124
Query: 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKK 312
PS++ LE+RLR R TETE+ + KRL A+ +++ K G+FD ++ ND L++ Y LK+
Sbjct: 125 PSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIINDDLDKAYATLKQ 183
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} Length = 204 | Back alignment and structure |
|---|
Score = 292 bits (751), Expect = 3e-99
Identities = 70/181 (38%), Positives = 108/181 (59%), Gaps = 3/181 (1%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
P+V+ GPSGVGKGTLI ++ EFPS F FS+S TTR R E +GV Y+F ++ E+
Sbjct: 13 PPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERK 72
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRAS--PLDAIFIFI 251
+K+G+FLEF N YGT + GK C+ ++++ G + ++ S D I+IF+
Sbjct: 73 LKEGQFLEFDKYANNFYGTLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFV 132
Query: 252 CPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLK 311
PPS++ L RL+ R TE ++I KR++ E+ + G F++ + ND L Y L+
Sbjct: 133 KPPSIDILLGRLKNRNTEKPEEINKRMQELTREMDEADKVG-FNYFIVNDDLARTYAELR 191
Query: 312 K 312
+
Sbjct: 192 E 192
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} Length = 218 | Back alignment and structure |
|---|
Score = 292 bits (751), Expect = 5e-99
Identities = 71/181 (39%), Positives = 106/181 (58%), Gaps = 3/181 (1%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
P+VI GPSGVGKGTLI L+ EFP+ F FSVS TTR R EK+GV Y+F ++++ E
Sbjct: 24 YPLVICGPSGVGKGTLIKKLLNEFPNYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDK 83
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRAS--PLDAIFIFI 251
+K+ FLE+ + N YGT + + K C+ ++++ G + ++ S +A++IFI
Sbjct: 84 LKNEDFLEYDNYANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFI 143
Query: 252 CPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLK 311
PPS + L RL R TE ++QI KR+ E+ + F+ + ND L Y+ LK
Sbjct: 144 KPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELHEANLLN-FNLSIINDDLTLTYQQLK 202
Query: 312 K 312
Sbjct: 203 N 203
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} Length = 207 | Back alignment and structure |
|---|
Score = 288 bits (739), Expect = 2e-97
Identities = 71/179 (39%), Positives = 111/179 (62%), Gaps = 3/179 (1%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
+V++GPSGVGKGT+ + ++ + + +S+S TTR R E DGV Y F R E
Sbjct: 7 LLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEAL 66
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICP 253
IKD +F+E+A GN YGT V+ V+ D G L+I+V+GA+ VR DA+FIF+ P
Sbjct: 67 IKDDQFIEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAP 126
Query: 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKK 312
PS+E L ERL RGTE++++I R+ A++E++ +D+++ ND++E ++
Sbjct: 127 PSLEHLRERLVGRGTESDEKIQSRINEARKEVEMMNL---YDYVVVNDEVELAKNRIQC 182
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} Length = 208 | Back alignment and structure |
|---|
Score = 286 bits (735), Expect = 8e-97
Identities = 78/179 (43%), Positives = 113/179 (63%), Gaps = 3/179 (1%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
+V++GPSGVGKGT+ + K+ + F +S+S TTR PR E+DGV Y+F R V E+A
Sbjct: 9 LLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQA 68
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICP 253
IKDGK LE+A GN YGT +E VE AG L+I+VQGA VR + + IFIF+ P
Sbjct: 69 IKDGKMLEYAEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTP 128
Query: 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKK 312
P + EL+ R+ RGTE+ + + +R+ AK+EI+ S +D+ + ND + + +K
Sbjct: 129 PDLSELKNRIIGRGTESMEVVEERMETAKKEIEMMAS---YDYAVVNDVVANAVQKIKG 184
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A Length = 207 | Back alignment and structure |
|---|
Score = 280 bits (718), Expect = 3e-94
Identities = 75/197 (38%), Positives = 116/197 (58%), Gaps = 6/197 (3%)
Query: 118 GAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEK 177
G + ++G V + VV++GPS VGK T++ L + P+ FSVS TTRAPR E
Sbjct: 5 GPDTKPTARGQPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN-LHFSVSATTRAPRPGEV 63
Query: 178 DGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY--GTSVEAVEAVADAGKRCILDIDVQG 235
DGV YHF + + ++ I G+ LE+A +HG L+ GT + V A A G ++++D+ G
Sbjct: 64 DGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAG 123
Query: 236 ARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFD 295
AR+++ + +A+ +F+ PPS ++L+ RL RGTET D I +RL A+ E+ G FD
Sbjct: 124 ARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAA---QGDFD 180
Query: 296 HILYNDKLEECYENLKK 312
++ N +LE L
Sbjct: 181 KVVVNRRLESACAELVS 197
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 Length = 180 | Back alignment and structure |
|---|
Score = 265 bits (681), Expect = 6e-89
Identities = 44/179 (24%), Positives = 94/179 (52%), Gaps = 10/179 (5%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
K +V+ G GVG+ + + L+ + P F + + HTTR P+ E++G +Y+F M +
Sbjct: 6 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD 65
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICP 253
I + ++LE+ S +YGT +E + + + G ILD++ Q + +R + +FI
Sbjct: 66 ISNNEYLEYGSHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAA 125
Query: 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKK 312
P++ G ++ + +RL+ + +++ + FD + N++++E +L++
Sbjct: 126 PTIT--------PGLNEDESL-QRLQKESDILQR-TYAHYFDLTIINNEIDETIRHLEE 174
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} Length = 197 | Back alignment and structure |
|---|
Score = 265 bits (681), Expect = 8e-89
Identities = 55/179 (30%), Positives = 84/179 (46%), Gaps = 13/179 (7%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
K +V+ G SGVG+ + + L+ + P F + V +TTR PR E+DG YHF M +
Sbjct: 20 KTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRN 79
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICP 253
I +FLEF S GN++GT E V + K ILDI+ Q + VR + L +FI P
Sbjct: 80 ISANEFLEFGSYQGNMFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAP 139
Query: 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKK 312
E L+ ++ + FD L N+ ++E + L++
Sbjct: 140 TDQGTQTEALQQLQKDS----------EAIRSQYAHY---FDLSLVNNGVDETLKKLQE 185
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* Length = 219 | Back alignment and structure |
|---|
Score = 250 bits (640), Expect = 3e-82
Identities = 74/178 (41%), Positives = 96/178 (53%), Gaps = 4/178 (2%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSM-FGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAI 194
+++ PSG GK +LI L+K P SVSHTTR PR E G HY F ++ I
Sbjct: 19 YIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMI 78
Query: 195 KDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPP 254
FLE A V GN YGTS EA+E V G LDID QGA+ +R A IFI PP
Sbjct: 79 SRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPP 138
Query: 255 SMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKK 312
S EL+ RLR RG ++E+ I KR+ A E+ +D+++ ND + +LK
Sbjct: 139 SKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYAE---YDYLIVNDDFDTALTDLKT 193
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} Length = 205 | Back alignment and structure |
|---|
Score = 247 bits (633), Expect = 2e-81
Identities = 66/177 (37%), Positives = 100/177 (56%), Gaps = 4/177 (2%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIK 195
+I+ PSG GK +L+ L+K S+SHTTR R +++GV Y F + + + +K
Sbjct: 10 FIISAPSGAGKTSLVRALVKALAE-IKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVK 68
Query: 196 DGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPS 255
+G FLE A+++ YGT + V AG+ +L+ID QGAR +R A+ IFI PPS
Sbjct: 69 EGAFLEHATIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPS 128
Query: 256 MEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKK 312
+E L ERL R + I +RL A+EE+ K FD+++ ND ++ +NL
Sbjct: 129 IEALRERLIKRRQDDTAIIEQRLALAREEMAHYKE---FDYLVVNDNFDQAVQNLIH 182
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} Length = 231 | Back alignment and structure |
|---|
Score = 245 bits (629), Expect = 2e-80
Identities = 61/178 (34%), Positives = 95/178 (53%), Gaps = 4/178 (2%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIK 195
+V++ PSG GK T+ + L+++ + SVS TTRA R EK+G Y+F +R +
Sbjct: 30 LVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCS 89
Query: 196 DGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRAS-PLDAIFIFICPP 254
+G+ +E A V GN YG + +E D G +L ID QGA + IFI PP
Sbjct: 90 NGEIIEHAEVFGNFYGVPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVSIFIMPP 149
Query: 255 SMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKK 312
SMEEL RL R + + + RL+ A EI ++ +D+++ N+ +EE + +
Sbjct: 150 SMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEA---YDYVIVNEDIEETADRISN 204
|
| >3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A* Length = 292 | Back alignment and structure |
|---|
Score = 247 bits (632), Expect = 4e-80
Identities = 66/196 (33%), Positives = 98/196 (50%), Gaps = 13/196 (6%)
Query: 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDG 179
V S N +PV+I GP K + L+ E+P FG V HTTR R E DG
Sbjct: 91 AVQRLSI----NYTRPVIILGP---LKDRINDDLISEYPDKFGSCVPHTTRPKREYEVDG 143
Query: 180 VHYHF-TERSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARS 238
YHF + R ME+ I++ F+E + NLYGTSV +V VA+ GK CILD+ +
Sbjct: 144 RDYHFVSSREQMERDIQNHLFIEAGQYNDNLYGTSVASVREVAEKGKHCILDVSGNAIKR 203
Query: 239 VRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHIL 298
++ + L + +FI P S++ + E R E + +R K E + G+ F ++
Sbjct: 204 LQVAQLYPVAVFIKPKSVDSVMEMNRRMTEEQAKKTYERA--IKMEQEFGE---YFTGVV 258
Query: 299 YNDKLEECYENLKKHL 314
D +EE Y +K +
Sbjct: 259 QGDTIEEIYSKVKSMI 274
|
| >1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A Length = 295 | Back alignment and structure |
|---|
Score = 240 bits (613), Expect = 3e-77
Identities = 71/183 (38%), Positives = 97/183 (53%), Gaps = 11/183 (6%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHF-TERSVMEK 192
+P++I GP+ K L+ EFP FG V HTTR R E DG YHF + R MEK
Sbjct: 106 RPIIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEK 162
Query: 193 AIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFIC 252
I+ KF+E + +LYGTSV++V VA+ GK CILD+ R ++A+ L I IFI
Sbjct: 163 DIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIR 222
Query: 253 PPSMEELEERLRARGTETEDQILKRLRNA-KEEIKQGKSSGIFDHILYNDKLEECYENLK 311
P S+E + E TE+Q K A K E + + F I+ D EE Y +K
Sbjct: 223 PRSLENVLEI---NKRITEEQARKAFDRATKLEQEFTE---CFSAIVEGDSFEEIYHKVK 276
Query: 312 KHL 314
+ +
Sbjct: 277 RVI 279
|
| >2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} Length = 721 | Back alignment and structure |
|---|
Score = 192 bits (487), Expect = 7e-55
Identities = 70/182 (38%), Positives = 98/182 (53%), Gaps = 9/182 (4%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHF-TERSVMEK 192
+P++I GP K L+ EFP FG V HTTR R E DG YHF + R MEK
Sbjct: 532 RPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEK 588
Query: 193 AIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFIC 252
I+ KF+E + +LYGTSV++V VA+ GK CILD+ R ++A+ L I IFI
Sbjct: 589 DIRAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIR 648
Query: 253 PPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKK 312
P S+E + E TE+Q K A +++Q + + F I+ D EE Y +K+
Sbjct: 649 PRSLENVLEI---NKRITEEQARKAFDRA-TKLEQ-EFTECFSAIVEGDSFEEIYHKVKR 703
Query: 313 HL 314
+
Sbjct: 704 VI 705
|
| >4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A Length = 337 | Back alignment and structure |
|---|
Score = 163 bits (413), Expect = 4e-47
Identities = 47/268 (17%), Positives = 100/268 (37%), Gaps = 27/268 (10%)
Query: 53 IYDRSTGNWLIPAVRGIEPRPCKGHSAVLLNEDRILVIKKGSSSDDCLWFLEVDTPYVRE 112
+ ++ +W I + S V L + + + + + + L E P+ ++
Sbjct: 72 VKEKFNNDWWIGRLVKEGCEIGFIPSPVKL--ENMRLQHEQRAKEFKLHSKEKRMPFFKK 129
Query: 113 QKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVG---KGTLISMLMKEFPSMFGFSVSHTT 169
+ +VV +PVV+ GPS G + L F +S T
Sbjct: 130 TEHTPPYDVVPS--------MRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISIT- 180
Query: 170 RAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNL--YGTSVEAVEAVADAGKRC 227
R +RS + +E ++ +L + +E + +A +
Sbjct: 181 RVTA-------DISLAKRS-VLNNPSKHAIIERSNTRSSLAEVQSEIERIFELARTLQLV 232
Query: 228 ILDID-VQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIK 286
+LD D + + + L I +++ S + L+ +++RG + ++ A +
Sbjct: 233 VLDADTINHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKL-- 290
Query: 287 QGKSSGIFDHILYNDKLEECYENLKKHL 314
+FD IL ++LE+ E+L +L
Sbjct: 291 AQCPPELFDVILDENQLEDACEHLADYL 318
|
| >3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} Length = 468 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 2e-25
Identities = 27/184 (14%), Positives = 55/184 (29%), Gaps = 35/184 (19%)
Query: 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVM 190
+PV I GP L +E P ++ + S PR D
Sbjct: 222 GFLRPVTIFGPI---ADVAREKLAREEPDIYQIAKSE----PRDAGTDQRSSGII----- 269
Query: 191 EKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIF 250
+ ++ + D K +LD+ + + I +F
Sbjct: 270 ----------------------RLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVF 307
Query: 251 ICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENL 310
+ P S + ++ E+ ++L ++++ I N + Y L
Sbjct: 308 LNPDSKQGVKTMRMRLCPESRKS-ARKLYERSHKLRKNNHHLFTTTINLNSMNDGWYGAL 366
Query: 311 KKHL 314
K+ +
Sbjct: 367 KEAI 370
|
| >3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens} Length = 308 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 6e-25
Identities = 29/180 (16%), Positives = 52/180 (28%), Gaps = 39/180 (21%)
Query: 135 PVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAI 194
PVVI GP + L E P F +R +
Sbjct: 147 PVVILGPV---ADIAMQKLTAEMPDQFE-IAETVSRTDSPSK------------------ 184
Query: 195 KDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPP 254
++ V +A+ K +LD+ + I +F P
Sbjct: 185 ----------------IIKLDTVRVIAEKDKHALLDVTPSAIERLNYVQYYPIVVFFIPE 228
Query: 255 SMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHL 314
S L+ + + +RL +++++ S I N + Y+ LK +
Sbjct: 229 SRPALKALRQWLAPASRRS-TRRLYAQAQKLRKHSSHLFTATIPLNGTSDTWYQELKAII 287
|
| >3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A Length = 391 | Back alignment and structure |
|---|
Score = 98.0 bits (243), Expect = 9e-23
Identities = 27/181 (14%), Positives = 53/181 (29%), Gaps = 35/181 (19%)
Query: 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVM 190
+PV I GP L +E P ++ + S PR D
Sbjct: 230 GFLRPVTIFGP---IADVAREKLAREEPDIYQIAKSE----PRDAGTDQRSSGII----- 277
Query: 191 EKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIF 250
+ ++ + D K +LD+ + + I +F
Sbjct: 278 ----------------------RLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVF 315
Query: 251 ICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENL 310
+ P S + ++ E+ ++L ++++ I N + Y L
Sbjct: 316 LNPDSKQGVKTMRMRLCPESRKS-ARKLYERSHKLRKNNHHLFTTTINLNSMNDGWYGAL 374
Query: 311 K 311
K
Sbjct: 375 K 375
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.5 bits (156), Expect = 3e-11
Identities = 58/459 (12%), Positives = 122/459 (26%), Gaps = 147/459 (32%)
Query: 5 PAFIVD-NLQNGNGFSNGFSLKSRDCETTTVIGD---KTYVIAGSDESIGVKIYDRSTG- 59
AF+ + + ++ L + + + D T + + S ++ +
Sbjct: 27 DAFVDNFDCKDVQDMPKSI-LSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE 85
Query: 60 ------NWLIPAVRGIEPRPCKGHSAVLLNEDRILVIKKGSSSDDCLW-FLEVDTPY--V 110
+L+ ++ E R ++ + D L+ +V Y
Sbjct: 86 VLRINYKFLMSPIK-TEQR------------QPSMMTRMYIEQRDRLYNDNQVFAKYNVS 132
Query: 111 REQKKVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFP--SMFGFSVSHT 168
R Q ++ + K V+I G G GK + + + F
Sbjct: 133 RLQPY---LKLRQALLEL--RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDF----- 182
Query: 169 TRAPRAMEKDGVHY-----HFTERSVMEKAIK-----DGKFLEFASVHGNLYGTSVEAVE 218
+ + + +V+E K D + + N+
Sbjct: 183 ----------KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQA 232
Query: 219 AVAD-----AGKRC--ILDIDVQGARSVRASPLDAIFIFIC------------------- 252
+ + C +L +VQ A++ A F C
Sbjct: 233 ELRRLLKSKPYENCLLVLL-NVQNAKAWNA------FNLSCKILLTTRFKQVTDFLSAAT 285
Query: 253 --PPSMEELEERLRARGTETEDQILKRLRNAK----EEIKQG---KSSGI---------- 293
S++ L E + +LK L E+ + S I
Sbjct: 286 TTHISLDHHSMTLTPD--EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 294 ---FDHILYNDKLEE----CYENLK----KHLGLDGSIATNHQTSPKGIDLPA------- 335
+ H+ DKL L+ + + S+ P +P
Sbjct: 344 WDNWKHVNC-DKLTTIIESSLNVLEPAEYRKMFDRLSVF------PPSAHIPTILLSLIW 396
Query: 336 --------DHSVSKVANKVIIKCGAAEGKASKNLMVLDV 366
V+K+ +++ E S + L++
Sbjct: 397 FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 42.1 bits (98), Expect = 3e-04
Identities = 41/312 (13%), Positives = 83/312 (26%), Gaps = 120/312 (38%)
Query: 8 IVDNLQNGNGFSNGFSLKSRDCET--TTVIGDKTYVIAGSDESIGVKIYDRSTGNWLIPA 65
++ N+QN + N F+L C+ TT K V D S L
Sbjct: 249 VLLNVQNAKAW-NAFNLS---CKILLTT--RFKQ-VT---DFLSAATTTHIS----LDHH 294
Query: 66 VRGIEPRPCKGHSAVLLNEDRILVIKKGSSSDDCLWFLEVDTPYVREQKKVVGAEVVAWS 125
+ P E + L++K L P RE
Sbjct: 295 SMTLTPD-----------EVKSLLLKYLDCRPQDL-------P--REVLTT--------- 325
Query: 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFT 185
P ++ +I+ +++ + + D +
Sbjct: 326 --------NPRRLS---------IIAESIRDGLATW----------------DNWKHVNC 352
Query: 186 ERSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLD 245
++ + I+ +S+ +E ++ +
Sbjct: 353 DK--LTTIIE----------------SSLNVLEP--AEYRKMFDRL-------------- 378
Query: 246 AIFIFICPPS---MEELEERLRARGTETEDQ-ILKRLRNAKEEIKQGKSSGIFDHILYND 301
++F PPS L + +++ ++ +L KQ K S I +Y +
Sbjct: 379 SVF----PPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLE 434
Query: 302 KLEECYENLKKH 313
+ H
Sbjct: 435 LKVKLENEYALH 446
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 Length = 189 | Back alignment and structure |
|---|
Score = 48.0 bits (114), Expect = 8e-07
Identities = 31/206 (15%), Positives = 59/206 (28%), Gaps = 54/206 (26%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIK 195
+ITGP+GVGK T L + + +E D +++
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDN------------SAYIEGDIINHMVVGGYRPPWESD 52
Query: 196 DGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDV---------QGARSVRASPLDA 246
+ L + ++ + A +LD Q ++
Sbjct: 53 ELLALTWKNI--------TDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIR 104
Query: 247 IFIFICPPSMEELEERLRARGTE--TEDQILKRLR---------------------NAKE 283
I EEL R R + ++ L+ + N +
Sbjct: 105 FIILWTNR--EELLRRDALRKKDEQMGERCLELVEEFESKGIDERYFYNTSHLQPTNLND 162
Query: 284 EIKQGKSSGIFDHILYNDKLEECYEN 309
+K K++ F + D LE + +
Sbjct: 163 IVKNLKTNPRFIFCMAGDPLEHHHHH 188
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* Length = 178 | Back alignment and structure |
|---|
Score = 47.8 bits (113), Expect = 8e-07
Identities = 29/142 (20%), Positives = 47/142 (33%), Gaps = 23/142 (16%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMF----GFSVSHTTRAPRAMEKDGVHYHFTERSVME 191
+++ G S GK ++ L P + S+ + G+ +
Sbjct: 6 IILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFD-------- 57
Query: 192 KAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRA------SPLD 245
DG L G E V A+A AG R I+D G + + LD
Sbjct: 58 ---ADGGV-SIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLD 113
Query: 246 AIFIFICPPSMEELEERLRARG 267
+++ + E R ARG
Sbjct: 114 VLWVGVRCD-GAVAEGRETARG 134
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 Length = 184 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 1e-05
Identities = 32/184 (17%), Positives = 55/184 (29%), Gaps = 33/184 (17%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIK 195
++ITG G GK ++ M+ E V E + TE K
Sbjct: 13 ILITGTPGTGKTSMAEMIAAELDGFQHLEVGKL-----VKENHFYTEYDTELDTHIIEEK 67
Query: 196 DGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPS 255
D ++ +E + + + +D + + +
Sbjct: 68 DED-------------RLLDFMEPIMVSRGNHV--VDYHSSELFPERWFHMVVVLHTST- 111
Query: 256 MEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFD-------HILYNDKLEECYE 308
E L ERL R KR N + EI+ D + ND LE+
Sbjct: 112 -EVLFERLTKRQYSEA----KRAENMEAEIQCICEEEARDAYEDDIVLVRENDTLEQMAA 166
Query: 309 NLKK 312
+++
Sbjct: 167 TVEE 170
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 Length = 191 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 4e-05
Identities = 23/136 (16%), Positives = 42/136 (30%), Gaps = 20/136 (14%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIK 195
++++G G GK T+ L G H D + ++
Sbjct: 12 LLLSGHPGSGKSTIAEALANL----PGVPKVH-------FHSDDL------WGYIKHGRI 54
Query: 196 DGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGA--RSVRASPLDAIFIFICP 253
D + + + + + A G ILD V+ + A +I +
Sbjct: 55 DPWLPQSHQQNRMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRT 114
Query: 254 PSMEELEERLRARGTE 269
+ E ER RG +
Sbjct: 115 TA-AEAIERCLDRGGD 129
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 44.4 bits (104), Expect = 5e-05
Identities = 18/87 (20%), Positives = 29/87 (33%), Gaps = 10/87 (11%)
Query: 27 RDCETTTVIG--DKTYVIAGSDESIG----VKIYDRSTGNWLIPAVRGIEPRPCKGHSAV 80
R C T T I ++ +I G I+D T W + HSA
Sbjct: 440 RMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSL---SHTRFRHSAC 496
Query: 81 LLNEDRILVIKKGSSSDDCLWFLEVDT 107
L + +L++ G + + V
Sbjct: 497 SLPDGNVLIL-GGVTEGPAMLLYNVTE 522
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 40.9 bits (95), Expect = 6e-04
Identities = 13/79 (16%), Positives = 21/79 (26%), Gaps = 11/79 (13%)
Query: 23 SLKSRDCETTTVIGDKTYVIAG-------SDESIGVKIYDRSTGNWL---IPAVRGIEPR 72
L R I + +I G D + + D + I +
Sbjct: 593 PLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIISLDPLSETLTSIPISRRIWEDHS 652
Query: 73 PCK-GHSAVLLNEDRILVI 90
G S V + I +I
Sbjct: 653 LMLAGFSLVSTSMGTIHII 671
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* Length = 695 | Back alignment and structure |
|---|
Score = 40.5 bits (94), Expect = 9e-04
Identities = 6/86 (6%), Positives = 30/86 (34%), Gaps = 9/86 (10%)
Query: 31 TTTVIGD-KTYVIAGSDESIGVKIYDRSTGNWLIPAVRGIEPRPCKGHSAVLLNE--DRI 87
+ + D ++ G E + +Y+ + + + + + + + +
Sbjct: 494 SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQG 553
Query: 88 LVI-----KKGSSSDD-CLWFLEVDT 107
+++ + + SD ++ + +
Sbjct: 554 IILGGGFMDQTTVSDKAIIFKYDAEN 579
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A Length = 179 | Back alignment and structure |
|---|
Score = 41.4 bits (97), Expect = 1e-04
Identities = 39/190 (20%), Positives = 70/190 (36%), Gaps = 34/190 (17%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIK 195
++ITG G GK +L + G V + R +A
Sbjct: 4 ILITGMPGSGKSEFAKLLKE-----RGAKVIVMSDVVRKR-------------YSIEAKP 45
Query: 196 DGKFLEFASVHGNLYGTSVEA---VEAVADAGKRCILDIDVQGARSV------RASPLDA 246
+ ++FA +YG V A VE + + ++ D G RS+ + D+
Sbjct: 46 GERLMDFAKRLREIYGDGVVARLCVEELGTSNHDLVV-FD--GVRSLAEVEEFKRLLGDS 102
Query: 247 IFIFICPPSMEELEERLRARGTETEDQILKRLRN-AKEEIKQGKSSGI--FDHILYNDK- 302
++I + +R+ R + + + L +EE+K G I D+I+ ND
Sbjct: 103 VYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELKLGIGEVIAMADYIITNDSN 162
Query: 303 LEECYENLKK 312
EE ++
Sbjct: 163 YEEFKRRCEE 172
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A Length = 180 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 2e-04
Identities = 36/181 (19%), Positives = 59/181 (32%), Gaps = 32/181 (17%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIK 195
+++TG GVGK TL L + G+ Y E+ +
Sbjct: 14 ILLTGTPGVGKTTLGKELASKS---------------------GLKYINVGDLAREEQLY 52
Query: 196 DGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPS 255
DG E+ + V+ ++ G +D G +F+
Sbjct: 53 DGYDEEYDCPILDE-DRVVDELDNQMREGGVI---VDYHGCDFFPERWFHIVFVLRTDT- 107
Query: 256 MEELEERLRARGTE----TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLK 311
L ERL RG T++ + + EE I H L ++K EE N+
Sbjct: 108 -NVLYERLETRGYNEKKLTDNIQCEIFQVLYEEATASYKEEI-VHQLPSNKPEELENNVD 165
Query: 312 K 312
+
Sbjct: 166 Q 166
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} Length = 193 | Back alignment and structure |
|---|
Score = 40.3 bits (94), Expect = 3e-04
Identities = 23/142 (16%), Positives = 41/142 (28%), Gaps = 25/142 (17%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIK 195
+++TG GK TL L P + KD +
Sbjct: 8 IIVTGHPATGKTTLSQALATGLR------------LPL-LSKDAFKEVMFDGLGWSDREW 54
Query: 196 DGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILD----IDVQGAR-SVRASPLDAIFIF 250
+ A + +G+ I++ +D+ R + I
Sbjct: 55 SRRVGATA------IMMLYHTAATILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQ 108
Query: 251 I-CPPSMEELEERLRARGTETE 271
I C S + L ER+ +R +
Sbjct: 109 IRCVASGDVLVERILSRIAQGA 130
|
| >1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 Length = 516 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 3e-04
Identities = 35/181 (19%), Positives = 60/181 (33%), Gaps = 50/181 (27%)
Query: 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEK---DGVHYHFTE 186
V + ++ GP G+GK T ++ +E G+ + +E+ D
Sbjct: 74 SGVFRAAMLYGPPGIGKTTAAHLVAQE----LGYDI---------LEQNASD-------V 113
Query: 187 RS--VMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRC-ILD-ID--VQGARS-V 239
RS ++ +K+ L+ SV G + I+D +D G R V
Sbjct: 114 RSKTLLNAGVKN--ALDNMSVVGYFKHNE---EAQNLNGKHFVIIMDEVDGMSGGDRGGV 168
Query: 240 RA-----SPLDAIFIFIC----PPSMEELEER---LRARGTETEDQILKRLRN--AKEEI 285
I IC P M + ++ R + I RL +E+
Sbjct: 169 GQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRP-DANSIKSRLMTIAIREKF 227
Query: 286 K 286
K
Sbjct: 228 K 228
|
| >2dcn_A Hypothetical fructokinase; 2-keto-3-deoxygluconate kinase, 2-keto- gluconate, transferase; HET: CKP ADP; 2.25A {Sulfolobus tokodaii} SCOP: c.72.1.1 PDB: 1wye_A* Length = 311 | Back alignment and structure |
|---|
Score = 41.0 bits (97), Expect = 3e-04
Identities = 16/116 (13%), Positives = 36/116 (31%), Gaps = 12/116 (10%)
Query: 183 HFTERSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDV-------QG 235
+ V E+ +K + + + + T+ EAV + D ++ +
Sbjct: 115 KLSPEDVDEEYVKSADLVHSSGITLAISSTAKEAVYKAFEIASNRSFDTNIRLKLWSAEE 174
Query: 236 ARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEE--IKQGK 289
A+ L + ++ + G D+ K + E +K G
Sbjct: 175 AKREILKLLSKFHLKFLITDTDDSK---IILGESDPDKAAKAFSDYAEIIVMKLGP 227
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 399 | |||
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 99.96 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.94 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 99.93 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 99.92 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 99.92 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.92 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.92 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 99.92 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 99.91 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 99.91 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 99.91 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.91 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 99.91 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 99.91 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 99.91 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.9 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.9 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.9 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 99.9 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 99.9 | |
| 3tvt_A | 292 | Disks large 1 tumor suppressor protein; DLG, SRC-h | 99.88 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.88 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 99.87 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 99.87 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 99.87 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 99.86 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 99.85 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 99.85 | |
| 1kjw_A | 295 | Postsynaptic density protein 95; protein-protein i | 99.85 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 99.85 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 99.85 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 99.84 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 99.84 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 99.84 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 99.84 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 99.83 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 99.83 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 99.82 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 99.81 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 99.81 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 99.8 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 99.79 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 99.79 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 99.78 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 99.78 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 99.77 | |
| 2xkx_A | 721 | Disks large homolog 4; structural protein, scaffol | 99.77 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 99.77 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 99.76 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 99.76 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 99.75 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 99.73 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.72 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 99.72 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 99.7 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 99.7 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.69 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 99.69 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 99.68 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 99.67 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 99.67 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.66 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 99.65 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.65 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.64 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 99.64 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.62 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 99.58 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.58 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 99.55 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 99.54 | |
| 3tsz_A | 391 | Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffol | 99.52 | |
| 3shw_A | 468 | Tight junction protein ZO-1; PDZ-SH3-GUK supramodu | 99.5 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 99.5 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 99.49 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.47 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 99.41 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.4 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.4 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.36 | |
| 4dey_A | 337 | Voltage-dependent L-type calcium channel subunit; | 99.35 | |
| 3kfv_A | 308 | Tight junction protein ZO-3; structural genomics c | 99.34 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.34 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 99.32 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.21 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.17 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.1 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.08 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 98.99 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 98.99 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 98.97 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 98.95 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 98.94 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 98.93 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 98.92 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 98.92 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 98.88 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 98.86 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 98.85 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.85 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 98.81 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 98.81 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 98.81 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 98.74 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 98.69 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 98.66 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 98.64 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 98.64 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 98.63 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 98.6 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 98.58 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 98.57 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 98.56 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 98.53 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 98.52 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 98.51 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 98.5 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 98.48 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 98.48 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 98.47 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 98.47 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 98.43 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 98.43 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.42 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 98.41 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 98.38 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 98.38 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 98.35 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 98.35 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 98.32 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 98.31 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 98.3 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 98.29 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 98.28 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 98.28 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 98.27 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 98.27 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 98.26 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 98.25 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 98.23 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 98.22 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 98.22 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 98.19 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 98.18 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 98.17 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 98.16 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 98.16 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 98.15 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.15 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 98.14 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 98.14 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 98.12 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.12 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 98.1 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 98.05 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 98.05 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 98.04 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 98.01 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 97.96 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 97.95 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.93 | |
| 4i1u_A | 210 | Dephospho-COA kinase; structural genomics, niaid, | 97.92 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 97.92 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 97.92 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 97.9 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 97.89 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 97.87 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 97.86 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 97.85 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 97.85 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 97.82 | |
| 3h2y_A | 368 | GTPase family protein; GTP-binding protein YQEH, p | 97.82 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 97.8 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 97.8 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 97.79 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 97.79 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 97.78 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 97.78 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 97.77 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 97.76 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.76 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 97.75 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 97.74 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 97.73 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 97.73 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 97.72 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 97.71 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 97.71 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 97.69 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 97.66 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 97.65 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 97.63 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 97.62 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 97.62 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 97.61 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 97.59 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 97.59 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 97.56 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 97.55 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 97.55 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 97.55 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 97.54 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 97.53 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 97.48 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 97.47 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.45 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 97.42 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 97.41 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 97.37 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 97.37 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 97.37 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 97.36 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.35 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.32 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 97.32 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 97.28 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 97.27 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.26 | |
| 3hjn_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 97.25 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 97.24 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 97.23 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 97.16 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 97.13 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 97.09 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 97.09 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 97.07 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.05 | |
| 3hdt_A | 223 | Putative kinase; structura genomics, PSI-2, protei | 97.02 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 97.02 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 96.99 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 96.97 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 96.93 | |
| 3fdi_A | 201 | Uncharacterized protein; cytidylate kinase like pr | 96.91 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 96.9 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 96.9 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 96.88 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 96.83 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 96.81 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 96.79 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 96.78 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 96.78 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 96.77 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.77 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.75 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.74 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.71 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 96.71 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 96.67 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 96.65 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.65 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 96.65 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 96.63 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.6 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.6 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 96.59 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 96.58 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.54 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.5 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.49 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 96.48 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 96.47 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 96.44 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 96.38 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 96.38 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 96.35 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.34 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 96.33 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 96.31 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.29 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 96.23 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 96.22 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 96.2 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 96.19 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.17 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 96.13 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 96.12 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 96.12 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 96.12 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 96.08 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 96.07 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 96.05 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 95.96 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 95.92 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 95.92 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 95.91 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 95.89 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 95.85 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 95.81 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 95.76 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 95.7 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 95.68 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 95.68 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 95.67 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 95.65 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 95.65 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 95.63 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 95.63 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 95.6 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 95.58 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 95.57 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 95.57 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 95.57 | |
| 2gks_A | 546 | Bifunctional SAT/APS kinase; transferase, sulfuryl | 95.56 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 95.54 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 95.54 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 95.52 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 95.52 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 95.52 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 95.51 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 95.5 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 95.5 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 95.5 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 95.5 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 95.49 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 95.48 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 95.47 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 95.43 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 95.41 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 95.41 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 95.4 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 95.37 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 95.35 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 95.35 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 95.33 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 95.33 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 95.32 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 95.32 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 95.31 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 95.31 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 95.29 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 95.29 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 95.28 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 95.27 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 95.27 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 95.27 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 95.25 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 95.25 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 95.24 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 95.22 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 95.21 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 95.21 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 95.2 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 95.2 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 95.18 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 95.18 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 95.17 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 95.16 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 95.16 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 95.15 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 95.14 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 95.14 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 95.13 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 95.11 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 95.11 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 95.09 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 95.07 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 95.05 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 95.03 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 95.03 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.02 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 95.01 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 94.98 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 94.98 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 94.97 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 94.96 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 94.96 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 94.94 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 94.94 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 94.92 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 94.91 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 94.89 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 94.89 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 94.88 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 94.87 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 94.85 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 94.85 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 94.83 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 94.83 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 94.83 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 94.83 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 94.81 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 94.81 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 94.8 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 94.8 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 94.8 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 94.78 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 94.77 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 94.77 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 94.77 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 94.77 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 94.76 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 94.75 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 94.74 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 94.74 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 94.74 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 94.72 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 94.72 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 94.7 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 94.7 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 94.7 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 94.67 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 94.66 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 94.66 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 94.66 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 94.65 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 94.65 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 94.64 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 94.62 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 94.61 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 94.6 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 94.6 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 94.57 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 94.56 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 94.56 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 94.54 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 94.54 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 94.54 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 94.53 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 94.5 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 94.49 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 94.48 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 94.48 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 94.48 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 94.45 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 94.44 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 94.44 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 94.44 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 94.4 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 94.37 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 94.36 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 94.33 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 94.33 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 94.3 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 94.28 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 94.28 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 94.27 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 94.22 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 94.21 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 94.19 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 94.18 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 94.16 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 94.15 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 94.07 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 94.06 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 94.04 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 94.03 | |
| 1knx_A | 312 | Probable HPR(Ser) kinase/phosphatase; HPR kinase, | 94.01 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 93.99 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 93.97 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 93.96 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 93.88 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 93.88 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 93.84 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 93.84 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 93.76 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 93.75 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 93.63 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 93.62 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 93.52 | |
| 1x6v_B | 630 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 93.47 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 93.45 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 93.43 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 93.42 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 93.41 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 93.37 | |
| 1g8f_A | 511 | Sulfate adenylyltransferase; alpha-beta protein, b | 93.33 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 93.29 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 93.27 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 93.27 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 93.21 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 93.17 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 93.16 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 93.16 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 93.14 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 93.13 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 93.07 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 93.06 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 93.04 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 93.01 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 92.96 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 92.89 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 92.86 | |
| 3gee_A | 476 | MNME, tRNA modification GTPase MNME; G protein, cy | 92.86 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 92.85 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 92.84 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 92.82 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 91.94 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 92.76 | |
| 3geh_A | 462 | MNME, tRNA modification GTPase MNME; G protein, U3 | 92.75 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 92.73 | |
| 1m8p_A | 573 | Sulfate adenylyltransferase; rossmann fold, phosph | 92.7 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 92.68 | |
| 1um8_A | 376 | ATP-dependent CLP protease ATP-binding subunit CL; | 92.65 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 92.52 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 92.5 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 92.46 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 92.42 | |
| 1f5n_A | 592 | Interferon-induced guanylate-binding protein 1; GB | 92.42 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 92.29 | |
| 3pfi_A | 338 | Holliday junction ATP-dependent DNA helicase RUVB; | 92.23 |
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-29 Score=228.26 Aligned_cols=182 Identities=48% Similarity=0.849 Sum_probs=167.4
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccCCc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTS 213 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g~~ 213 (399)
++++|+||||||||||++.|....+..++..++||||+++.++.+|..|+|.+.+.|..++..+.|+|+..+.+++||++
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~~~~g~~YGt~ 81 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST 81 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCcCCceeEeecHHHHHHHHHcCCEEEEEEEcCceeeee
Confidence 67999999999999999999988876777799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCceEEecchhhHHHHHcCCc-ceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCC
Q 015825 214 VEAVEAVADAGKRCILDIDVQGARSVRASPL-DAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSG 292 (399)
Q Consensus 214 ~~~i~~~~~~g~~~vldld~~g~~~l~~~~~-~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~ 292 (399)
.+.+...+..|..+++++++++++.++.... ..+.+|+.+|+++.|.+|+.+|+.++.+.+++||..+..++.+.. ..
T Consensus 82 ~~~v~~~l~~g~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~e~~e~i~~Rl~~a~~e~~~~~-~~ 160 (186)
T 1ex7_A 82 VASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAE-TG 160 (186)
T ss_dssp HHHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHT-TT
T ss_pred cceeeehhhCCCEEEecCCHHHHHHHHHhcccCceEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhcc-cc
Confidence 9999999999999999999999999987654 788899999999999999999999999999999999888876542 34
Q ss_pred cceEEEeCCCHHHHHHHHHHhhcc
Q 015825 293 IFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 293 ~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
.||+||+|+|+++|+..+..++..
T Consensus 161 ~fD~vIvNddle~a~~~l~~iI~a 184 (186)
T 1ex7_A 161 AHDKVIVNDDLDKAYKELKDFIFA 184 (186)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHTT
T ss_pred CCcEEEECcCHHHHHHHHHHHHHh
Confidence 689999999999999999987754
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-27 Score=227.92 Aligned_cols=156 Identities=22% Similarity=0.301 Sum_probs=118.5
Q ss_pred CCCceeccEEEEEecC-CeeEEEEeeeCCCceEEcccccCCC------CCCCCCCCccCccccchhhhhccCCCceEEEE
Q 015825 30 ETTTVIGDKTYVIAGS-DESIGVKIYDRSTGNWLIPAVRGIE------PRPCKGHSAVLLNEDRILVIKKGSSSDDCLWF 102 (399)
Q Consensus 30 ~~~~~vGD~v~~~~~~-~~~~i~~i~~r~~~~l~rp~~an~~------~~~~p~~~~~~l~~dr~L~~~~~~~~~~~i~~ 102 (399)
+..|+|||||.|+..+ ++|+|++|+|| +|.|+||.+||+| ++..|.++..+| ||||++++..+++|+|++
T Consensus 48 ~~~~~vGD~V~~~~~~~~~~~i~~i~~R-~~~l~R~~~anvD~v~~V~~~~~p~~~~~~i--~r~L~~~~~~~~~~vivl 124 (307)
T 1t9h_A 48 KITPLVGDYVVYQAENDKEGYLMEIKER-TNELIRPPICNVDQAVLVFSAVQPSFSTALL--DRFLVLVEANDIQPIICI 124 (307)
T ss_dssp CCCCCBTCEEEEECCTTSCEEEEEECCC-SCEETTTTEECCCEEEEEEESTTTTCCHHHH--HHHHHHHHTTTCEEEEEE
T ss_pred CCCCCCCeEEEEEEcCCCceEEEEEcch-hhhhhHHHHHhCCEEEEEEeCCCCCCCHHHH--HHHHHHHHHCCCCEEEEE
Confidence 4569999999998744 57999999999 9999999999999 666799999999 999999999999999999
Q ss_pred eCCCh---HH----HHHHH---HHhCCeEEEeccC--------ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccce
Q 015825 103 LEVDT---PY----VREQK---KVVGAEVVAWSKG--------VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFS 164 (399)
Q Consensus 103 ~k~D~---~~----~~~l~---~~~g~~v~~~s~~--------~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~ 164 (399)
||+|. .. ++++. +..||+++.+|+. ....+|++++|+||||||||||+|+|.|...+..| .
T Consensus 125 nK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~g~~~L~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G-~ 203 (307)
T 1t9h_A 125 TKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTN-E 203 (307)
T ss_dssp ECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHTTCTTTGGGGTTSEEEEEESHHHHHHHHHHHHCC---------
T ss_pred ECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCCCHHHHHhhcCCCEEEEECCCCCCHHHHHHHhccccccccc-c
Confidence 99993 22 34433 4679999998743 12358999999999999999999999999988888 5
Q ss_pred ee-------ecCCCccccccCCeeEEecChHHH
Q 015825 165 VS-------HTTRAPRAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 165 i~-------~ttr~~~~~~~~~i~yvfq~~~lf 190 (399)
++ ++|+........ .+|++|++.+.
T Consensus 204 I~~~~~~G~~tt~~~~~~~~~-~g~v~dtpg~~ 235 (307)
T 1t9h_A 204 ISEHLGRGKHTTRHVELIHTS-GGLVADTPGFS 235 (307)
T ss_dssp -----------CCCCCEEEET-TEEEESSCSCS
T ss_pred eeeecCCCcccccHHHHhhcC-CEEEecCCCcc
Confidence 54 566654433333 68999987543
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=99.92 E-value=2.7e-27 Score=235.27 Aligned_cols=216 Identities=19% Similarity=0.146 Sum_probs=165.7
Q ss_pred hCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--cccccCCeeEEecChHHHHHHH
Q 015825 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 117 ~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~~i~yvfq~~~lf~~~~ 194 (399)
+|...+..+.++...+|++++|+||||||||||+++|+|+++|..| .+....+.. .....++++|+||++.+|+++
T Consensus 13 yg~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G-~I~i~G~~~~~~~~~~r~ig~VfQ~~~l~p~l- 90 (381)
T 3rlf_A 13 WGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG-DLFIGEKRMNDTPPAERGVGMVFQSYALYPHL- 90 (381)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE-EEEETTEECTTCCGGGSCEEEECTTCCCCTTS-
T ss_pred ECCEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCe-EEEECCEECCCCCHHHCCEEEEecCCcCCCCC-
Confidence 4444444444455679999999999999999999999999999988 555422111 111235699999999999988
Q ss_pred hhhhhHHHHHHhccccCCcHHHHHHHHHc-----CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 195 KDGKFLEFASVHGNLYGTSVEAVEAVADA-----GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g~~~~~i~~~~~~-----g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
++.|++.|....++.+....++.+.+ ++..+.+-.+..+...++|++..+.+|+.+|++++||||++++|+.
T Consensus 91 ---tV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lLLLDEPts~LD~~ 167 (381)
T 3rlf_A 91 ---SVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAA 167 (381)
T ss_dssp ---CHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHH
T ss_pred ---CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEEEEECCCcCCCHH
Confidence 89999988766666666544433322 2211222233334444567777778999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVAN 344 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~ 344 (399)
.++++++.|+++.++.+ .++|+++||++++...+++++.+.+|++++.+++.+++..|....++.+.+
T Consensus 168 ~~~~l~~~l~~l~~~~g-------~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~~~~v~~~~g 235 (381)
T 3rlf_A 168 LRVQMRIEISRLHKRLG-------RTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFIG 235 (381)
T ss_dssp HHHHHHHHHHHHHHHHC-------CEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHHHHHSS
T ss_pred HHHHHHHHHHHHHHhCC-------CEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCccHHHHHhcC
Confidence 99999999999876543 389999999999999999999999999999999999999998888776544
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.8e-27 Score=233.52 Aligned_cols=216 Identities=13% Similarity=0.049 Sum_probs=161.3
Q ss_pred hCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC------ccccccCCeeEEecChHHH
Q 015825 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA------PRAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 117 ~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~------~~~~~~~~i~yvfq~~~lf 190 (399)
+|...+..+.+....+|++++|+||||||||||+++|+|+++|..| .+....+. ......++++|+||++.+|
T Consensus 14 y~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G-~I~i~G~~i~~~~~~~~~~~r~ig~vfQ~~~l~ 92 (359)
T 3fvq_A 14 FQNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSG-EISLSGKTIFSKNTNLPVRERRLGYLVQEGVLF 92 (359)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEE-EEEETTEEEESSSCBCCGGGSCCEEECTTCCCC
T ss_pred ECCEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCc-EEEECCEECcccccccchhhCCEEEEeCCCcCC
Confidence 4444444444555679999999999999999999999999999888 55432211 1122235699999999999
Q ss_pred HHHHhhhhhHHHHHHhccccCCcHHHHH----HHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHh
Q 015825 191 EKAIKDGKFLEFASVHGNLYGTSVEAVE----AVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRA 265 (399)
Q Consensus 191 ~~~~~~~~~~E~~~~~~~~~g~~~~~i~----~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~ 265 (399)
+++ ++.|++.|....++.+....+ +.++. ++..+.+-.+..+...++|++..+.+|+.+|++++||||+++
T Consensus 93 p~l----tV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRValArAL~~~P~lLLLDEPts~ 168 (359)
T 3fvq_A 93 PHL----TVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSA 168 (359)
T ss_dssp TTS----CHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTT
T ss_pred CCC----CHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 888 899999887655554433332 22222 222122223333444456777778899999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccC
Q 015825 266 RGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVAN 344 (399)
Q Consensus 266 lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~ 344 (399)
+|+..++++++.+.++.++. ..++|+++||++++...+++++.+.+|++++.+++.+++..|...+++.+.+
T Consensus 169 LD~~~r~~l~~~l~~~~~~~-------g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~~a~~~g 240 (359)
T 3fvq_A 169 LDEQLRRQIREDMIAALRAN-------GKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADLDAALFIG 240 (359)
T ss_dssp SCHHHHHHHHHHHHHHHHHT-------TCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSCHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHHHHhC-------CCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCcccHHHHHhcc
Confidence 99999999988888765543 3489999999999999999999999999999999999999998777665443
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=7.4e-25 Score=199.42 Aligned_cols=185 Identities=49% Similarity=0.848 Sum_probs=158.0
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYG 211 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g 211 (399)
+|++++|+||||||||||+++|+++++..+|..++|||+.++.++..+.+|.|.+...|..++.++.++++..+.+++||
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~~~g~~~~~~~~~~~~~~i~~~~~l~~~~~~~n~~g 82 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYG 82 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcccCCceEEEccHHHHHHHHHcCCCEeeeeecCccCC
Confidence 58999999999999999999999998777888889999988877778889999998888887777788888888888899
Q ss_pred CcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCC
Q 015825 212 TSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSS 291 (399)
Q Consensus 212 ~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~ 291 (399)
.+.+.+.++++.+..+++++++++....+.....+..+|+.+|++++||||++++|.++++.++++|..+..++......
T Consensus 83 ~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~~~~a~~~ 162 (198)
T 1lvg_A 83 TSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEP 162 (198)
T ss_dssp EEHHHHHHHHHTTCEEEEECCHHHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTGGGST
T ss_pred CCHHHHHHHHHcCCcEEEECCHHHHHHHHhcCCCcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 99888988888888888899998888776656666779999999999999999999999999999999887665432112
Q ss_pred CcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 292 GIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 292 ~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
..+|.|++|+++++++..+..++..
T Consensus 163 ~~~D~iivnd~le~a~~~l~~ii~~ 187 (198)
T 1lvg_A 163 GLFDLVIINDDLDKAYATLKQALSE 187 (198)
T ss_dssp TTCSEEEECSSHHHHHHHHHHHTHH
T ss_pred CCceEEEECCCHHHHHHHHHHHHHH
Confidence 6789999999999999999887754
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=9.4e-25 Score=202.14 Aligned_cols=184 Identities=40% Similarity=0.600 Sum_probs=160.2
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCC--cccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhc
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPS--MFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHG 207 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~--~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~ 207 (399)
..+|++++|+||||||||||+++|++..++ ..| .++++|++++..+..+++|+||+...|+.+...+.|.|++.+.+
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g-~v~~ttr~~~~~e~~gi~y~fq~~~~f~~~~~~~~f~E~~~~~~ 91 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQV-SVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFG 91 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEE-CCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETT
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEE-EEEecCCCCCcccccCceEEECCHHHHHHHHhcCHHHHHHHHHh
Confidence 358999999999999999999999999985 455 88899998877777789999999999998877777799988888
Q ss_pred cccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHh
Q 015825 208 NLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQ 287 (399)
Q Consensus 208 ~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~ 287 (399)
++|+++.+.+.+.++.|..+++|+|+++...++.......++|+.+|++..+.+|+..++.++.+++.+++..+..++..
T Consensus 92 ~~yg~~~~~v~~~l~~G~illLDLD~~~~~~i~~~l~~~~tI~i~th~~~~l~~Rl~~rG~~~~e~i~~rl~~a~~e~~~ 171 (219)
T 1s96_A 92 NYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSH 171 (219)
T ss_dssp EEEEEEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSSHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHTT
T ss_pred ccCCCCHHHHHHHHhcCCeEEEEECHHHHHHHHHHccCCEEEEEECCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 88999888888889899999999999999988876657788999999999999999999988999999999988776653
Q ss_pred ccCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 288 GKSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 288 ~~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
...||++++|+++++|+..+..++...
T Consensus 172 ---~~~~d~~i~Nd~l~~a~~~l~~ii~~~ 198 (219)
T 1s96_A 172 ---YAEYDYLIVNDDFDTALTDLKTIIRAE 198 (219)
T ss_dssp ---GGGSSEEEECSSHHHHHHHHHHHHHHH
T ss_pred ---ccCCCEEEECcCHHHHHHHHHHHHHHH
Confidence 346899999999999999999887544
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.3e-24 Score=197.56 Aligned_cols=176 Identities=32% Similarity=0.536 Sum_probs=150.9
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcc
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGN 208 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~ 208 (399)
...+|++++|+||||||||||++.|++.++..+...+++|||+++..+.++..|+|.+...|..++..+.|+|+..+.++
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE~~G~~y~fvs~~~f~~~i~~~~fle~~~~~~n 94 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSEEDGKEYHFISTEEMTRNISANEFLEFGSYQGN 94 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTCCTTSSCEECCHHHHHHHHHTTCEEEEEEETTE
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCeeccccceeccHHHhhhhhhhhhhhhhhhhhce
Confidence 45689999999999999999999999988755556889999999999999999999999999999999999999999999
Q ss_pred ccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhc
Q 015825 209 LYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQG 288 (399)
Q Consensus 209 ~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~ 288 (399)
+||++.+.+++.++.|+.+++++++++++.++...+.++++|+.+|++. +..++.+.+.+++.++..+.
T Consensus 95 ~YGt~~~~v~~~l~~G~~vildid~qg~~~~~~~~~~~~~Ifi~Pps~~--------~~~e~~~~i~~r~~~~~~~~--- 163 (197)
T 3ney_A 95 MFGTKFETVHQIHKQNKIAILDIEPQTLKIVRTAELSPFIVFIAPTDQG--------TQTEALQQLQKDSEAIRSQY--- 163 (197)
T ss_dssp EEEEEHHHHHHHHHTTCEEEEECCGGGHHHHCSTTTCEEEEEEEECCBS--------SCCHHHHHHHHHHHHHHHHH---
T ss_pred ecccchhhHHHHHhcCCeEEEEECHHHHHHHHhcCCCceEEEEeCCCcc--------ccchHHHHHHHHHHHHHHhh---
Confidence 9999999999999999999999999999999888888999999999863 33334456666665543222
Q ss_pred cCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 289 KSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 289 ~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
.+.||++++|+|+++|++.+..++...
T Consensus 164 --~~~fd~vivNd~l~~a~~~l~~ii~~~ 190 (197)
T 3ney_A 164 --AHYFDLSLVNNGVDETLKKLQEAFDQA 190 (197)
T ss_dssp --GGGCSEEEEESCHHHHHHHHHHHHHHC
T ss_pred --ccCCCEEEECCCHHHHHHHHHHHHHHc
Confidence 246799999999999999999987654
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-26 Score=227.09 Aligned_cols=211 Identities=12% Similarity=0.082 Sum_probs=158.7
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--cccccCCeeEEecChHHHHHHHhhhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVMEKAIKDGKF 199 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~~i~yvfq~~~lf~~~~~~~~~ 199 (399)
+..+.+....+|++++|+||||||||||+++|+|+++|..| .+....+.. .....+.++|+||++.+|+++ ++
T Consensus 18 vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G-~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~l----tv 92 (362)
T 2it1_A 18 ALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSG-KIYFDEKDVTELPPKDRNVGLVFQNWALYPHM----TV 92 (362)
T ss_dssp EEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE-EEEETTEECTTSCGGGTTEEEECTTCCCCTTS----CH
T ss_pred EEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCce-EEEECCEECCcCCHhHCcEEEEecCcccCCCC----CH
Confidence 33334455668999999999999999999999999999888 554322111 011235699999999889887 89
Q ss_pred HHHHHHhccccCCcHHHH----HHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHH
Q 015825 200 LEFASVHGNLYGTSVEAV----EAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQI 274 (399)
Q Consensus 200 ~E~~~~~~~~~g~~~~~i----~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i 274 (399)
.+++.|....++.+.... .+.++. ++..+.+-.+..+...++|+...+.+|+.+|++++||||++++|+..++.+
T Consensus 93 ~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l 172 (362)
T 2it1_A 93 YKNIAFPLELRKAPREEIDKKVREVAKMLHIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEV 172 (362)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESGGGGSCHHHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHH
Confidence 999988655555554433 233322 222222223334444456677777899999999999999999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccC
Q 015825 275 LKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVAN 344 (399)
Q Consensus 275 ~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~ 344 (399)
++.|+++.++.+ .++|+++||++++...+++++.+.+|++++.+++.+++..|....++.+.+
T Consensus 173 ~~~l~~l~~~~g-------~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~~~~~~g 235 (362)
T 2it1_A 173 RAELKRLQKELG-------ITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKFVGGFLG 235 (362)
T ss_dssp HHHHHHHHHHHT-------CEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHHHHHSB
T ss_pred HHHHHHHHHhCC-------CEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchHHHHHcC
Confidence 999998865543 389999999999999999999999999999999999998887776665443
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=99.91 E-value=2.1e-26 Score=229.03 Aligned_cols=215 Identities=12% Similarity=0.124 Sum_probs=159.8
Q ss_pred CCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--------cccccCCeeEEecChHH
Q 015825 118 GAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--------RAMEKDGVHYHFTERSV 189 (399)
Q Consensus 118 g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--------~~~~~~~i~yvfq~~~l 189 (399)
+...+..+.+....+|++++|+||||||||||+++|+|+++|..| .+....+.. .....++++|+||++.+
T Consensus 14 ~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G-~I~i~g~~~~~~~~~~~~~~~~r~ig~v~Q~~~l 92 (372)
T 1g29_1 14 GEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRG-QIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYAL 92 (372)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEE-EEEETTEEEEEGGGTEECCGGGSSEEEECSCCCC
T ss_pred CCEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCcc-EEEECCEECccccccccCCHhHCCEEEEeCCCcc
Confidence 333333344455569999999999999999999999999999888 554322111 11123569999999988
Q ss_pred HHHHHhhhhhHHHHHHhccccCCcHHHHHH----HHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHH
Q 015825 190 MEKAIKDGKFLEFASVHGNLYGTSVEAVEA----VADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (399)
Q Consensus 190 f~~~~~~~~~~E~~~~~~~~~g~~~~~i~~----~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~ 264 (399)
|+++ ++.+++.|....++.+.....+ .++. ++..+.+-.+..+...++|+...+.+|+.+|++++||||++
T Consensus 93 ~~~l----tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s 168 (372)
T 1g29_1 93 YPHM----TVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLS 168 (372)
T ss_dssp CTTS----CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTT
T ss_pred CCCC----CHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEECCCCc
Confidence 9887 8999998876555555443332 2221 22111222233333445666777789999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccC
Q 015825 265 ARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVAN 344 (399)
Q Consensus 265 ~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~ 344 (399)
++|+..++.+++.|+++.++.+ .++|+++||++++...+++++.+.+|++++.+++.+++..|...+++.+.+
T Consensus 169 ~LD~~~r~~l~~~l~~l~~~~g-------~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~~~~~g 241 (372)
T 1g29_1 169 NLDAKLRVRMRAELKKLQRQLG-------VTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAGFIG 241 (372)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHT-------CEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHHHHHSS
T ss_pred cCCHHHHHHHHHHHHHHHHhcC-------CEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhCcccHHHHHHhC
Confidence 9999999999999998866543 389999999999999999999999999999999999998888777766543
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.91 E-value=2.3e-26 Score=227.44 Aligned_cols=216 Identities=13% Similarity=0.094 Sum_probs=160.8
Q ss_pred hCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--cccccCCeeEEecChHHHHHHH
Q 015825 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 117 ~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~~i~yvfq~~~lf~~~~ 194 (399)
+|...+..+.+....+|++++|+||||||||||+++|+|+++|..| .+....+.. .....+.++|+||++.+|+++
T Consensus 13 y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G-~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~l- 90 (359)
T 2yyz_A 13 FGKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSG-EIYFDDVLVNDIPPKYREVGMVFQNYALYPHM- 90 (359)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEE-EEEETTEECTTSCGGGTTEEEECSSCCCCTTS-
T ss_pred ECCEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCcc-EEEECCEECCCCChhhCcEEEEecCcccCCCC-
Confidence 3333334444455679999999999999999999999999999888 555422111 011235699999999889887
Q ss_pred hhhhhHHHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 195 KDGKFLEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
++.|++.|....++.+... +.+.++. ++..+.+-.+..+...++|+...+.+|+.+|++++||||++++|+.
T Consensus 91 ---tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lLLLDEP~s~LD~~ 167 (359)
T 2yyz_A 91 ---TVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDAN 167 (359)
T ss_dssp ---CHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHH
T ss_pred ---CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHH
Confidence 8999998876555544332 3333332 2211122223333444566777778999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVAN 344 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~ 344 (399)
.++.+++.|+++.++.+ .++++++||++++...+++++.+.+|++++.+++.+++..|....++.+.+
T Consensus 168 ~r~~l~~~l~~l~~~~g-------~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~~~~~g 235 (359)
T 2yyz_A 168 LRMIMRAEIKHLQQELG-------ITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFVASFIG 235 (359)
T ss_dssp HHHHHHHHHHHHHHHHC-------CEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHHHHHSS
T ss_pred HHHHHHHHHHHHHHhcC-------CEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHHHHHHhC
Confidence 99999999998865532 389999999999999999999999999999999999998888777666544
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.91 E-value=6.7e-25 Score=216.48 Aligned_cols=141 Identities=23% Similarity=0.226 Sum_probs=112.6
Q ss_pred ceecccCCCCCceeccEEEEEecC-Ce------eEEEEeeeCCCceEEccc--------ccCCC-----CCCCCCCCccC
Q 015825 22 FSLKSRDCETTTVIGDKTYVIAGS-DE------SIGVKIYDRSTGNWLIPA--------VRGIE-----PRPCKGHSAVL 81 (399)
Q Consensus 22 ~~~k~~~~~~~~~vGD~v~~~~~~-~~------~~i~~i~~r~~~~l~rp~--------~an~~-----~~~~p~~~~~~ 81 (399)
+..+.++....|+|||||.|+..+ ++ |+|++|+|| +|.|+||+ +||+| .+..|.++..+
T Consensus 70 ~~~~~r~~~~~~~vGD~V~~~~~~~~~~~~~~~~~I~~i~~R-~~~l~R~~~~~~~~~i~anvD~v~iv~a~~P~~~~~~ 148 (358)
T 2rcn_A 70 HRCNIRRTIRSLVTGDRVVWRPGKAAAEGVNVKGIVEAVHER-TSVLTRPDFYDGVKPIAANIDQIVIVSAILPELSLNI 148 (358)
T ss_dssp EEEEECTTCCCCCBTCEEEEECBC-------CCEEEEEECCC-SCEEEEC-----CEEEEECCCEEEEEEESTTTCCHHH
T ss_pred EEEEecCCCCCCCCCcEEEEEeCCCccccccccceEeEEeCC-cCcccCcchhhHHHHHHhcCCEEEEEEeCCCCCCHHH
Confidence 455666665679999999998633 34 899999999 99999986 89999 33469999999
Q ss_pred ccccchhhhhccCCCceEEEEeCCCh--H-H---HHHH---HHHhCCeEEEeccC-cc-------CCCCcEEEEEcCCCC
Q 015825 82 LNEDRILVIKKGSSSDDCLWFLEVDT--P-Y---VREQ---KKVVGAEVVAWSKG-VI-------GNVEKPVVITGPSGV 144 (399)
Q Consensus 82 l~~dr~L~~~~~~~~~~~i~~~k~D~--~-~---~~~l---~~~~g~~v~~~s~~-~~-------~~~g~~~~l~GpsG~ 144 (399)
| ||||++++..+++|+|++||+|. + . ++.+ .+..||+++.+|+. .. ..+|++++|+|||||
T Consensus 149 i--~r~L~~a~~~~~~~iivlNK~DL~~~~~~~~~~~~~~~y~~~G~~v~~~Sa~~~~gl~~L~~~~~G~~~~lvG~sG~ 226 (358)
T 2rcn_A 149 I--DRYLVGCETLQVEPLIVLNKIDLLDDEGMDFVNEQMDIYRNIGYRVLMVSSHTQDGLKPLEEALTGRISIFAGQSGV 226 (358)
T ss_dssp H--HHHHHHHHHHTCEEEEEEECGGGCCHHHHHHHHHHHHHHHTTTCCEEECBTTTTBTHHHHHHHHTTSEEEEECCTTS
T ss_pred H--HHHHHHHHhcCCCEEEEEECccCCCchhHHHHHHHHHHHHhCCCcEEEEecCCCcCHHHHHHhcCCCEEEEECCCCc
Confidence 9 99999999999999999999993 2 2 2222 25789999998865 22 248999999999999
Q ss_pred CHHHHHhhhhhccC-Ccccceee
Q 015825 145 GKGTLISMLMKEFP-SMFGFSVS 166 (399)
Q Consensus 145 GKSTl~~~L~~~~~-~~~g~~i~ 166 (399)
|||||+|+|+|... +..| .++
T Consensus 227 GKSTLln~L~g~~~~~~~G-~I~ 248 (358)
T 2rcn_A 227 GKSSLLNALLGLQNEILTN-DVS 248 (358)
T ss_dssp SHHHHHHHHHCCSSCCCCC----
T ss_pred cHHHHHHHHhccccccccC-Ccc
Confidence 99999999999998 8777 444
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.9e-26 Score=227.67 Aligned_cols=216 Identities=12% Similarity=0.088 Sum_probs=151.1
Q ss_pred hCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--cccccCCeeEEecChHHHHHHH
Q 015825 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 117 ~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~~i~yvfq~~~lf~~~~ 194 (399)
++...+..+.++...+|++++|+||||||||||+++|+|+++|..| .+....+.. .....+.++|+||++.+|+++
T Consensus 21 y~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G-~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~l- 98 (372)
T 1v43_A 21 FGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG-RIYFGDRDVTYLPPKDRNISMVFQSYAVWPHM- 98 (372)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE-EEEETTEECTTSCGGGGTEEEEEC------CC-
T ss_pred ECCEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCce-EEEECCEECCCCChhhCcEEEEecCcccCCCC-
Confidence 3433344444455679999999999999999999999999999988 554322111 011234699999999999887
Q ss_pred hhhhhHHHHHHhccccCCcHHHHHH----HHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 195 KDGKFLEFASVHGNLYGTSVEAVEA----VADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g~~~~~i~~----~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
++.|++.|....++.+.....+ .++. ++..+.+-.+..+...++|+...+.+|+.+|++++||||++++|+.
T Consensus 99 ---tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~ 175 (372)
T 1v43_A 99 ---TVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAK 175 (372)
T ss_dssp ---CHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTSCHH
T ss_pred ---CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHH
Confidence 8999998876555555443332 2222 1111111111111112344555667999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVAN 344 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~ 344 (399)
.++.+++.|+++.++.+ .++|+++||++++...+++++.+.+|++++.+++.+++..|...+++.+.+
T Consensus 176 ~r~~l~~~l~~l~~~~g-------~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~a~~~g 243 (372)
T 1v43_A 176 LRVAMRAEIKKLQQKLK-------VTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFIG 243 (372)
T ss_dssp HHHHHHHHHHHHHHHHT-------CEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHHHHHSS
T ss_pred HHHHHHHHHHHHHHhCC-------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHHHHHHhC
Confidence 99999999998866543 389999999999999999999999999999999999998888777766544
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=99.91 E-value=2e-26 Score=227.47 Aligned_cols=205 Identities=14% Similarity=0.108 Sum_probs=155.3
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--cccccCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
+...+|++++|+||||||||||+++|+|+++|..| .+....+.. .....+.++|+||++.+|+++ ++.|++.|
T Consensus 36 l~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G-~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~l----tv~eni~~ 110 (355)
T 1z47_A 36 FQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKG-DVWIGGKRVTDLPPQKRNVGLVFQNYALFQHM----TVYDNVSF 110 (355)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEE-EEEETTEECTTCCGGGSSEEEECGGGCCCTTS----CHHHHHHH
T ss_pred EEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCcc-EEEECCEECCcCChhhCcEEEEecCcccCCCC----CHHHHHHH
Confidence 34568999999999999999999999999999888 555422111 111235699999999888887 89999988
Q ss_pred hccccCCcHHHHH----HHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHH
Q 015825 206 HGNLYGTSVEAVE----AVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRN 280 (399)
Q Consensus 206 ~~~~~g~~~~~i~----~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~ 280 (399)
....++.+..... +.++. ++.-+.+-.+..+...++|+...+.+|+.+|++++||||++++|+..++.+++.|++
T Consensus 111 ~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~ 190 (355)
T 1z47_A 111 GLREKRVPKDEMDARVRELLRFMRLESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQ 190 (355)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHH
T ss_pred HHHHcCCCHHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHH
Confidence 6555555544332 22322 111112222333334456667777899999999999999999999999999999998
Q ss_pred HHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccC
Q 015825 281 AKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVAN 344 (399)
Q Consensus 281 ~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~ 344 (399)
+.++.+ .++|+++||++++...+++++.+.+|++++.+++.+++..|....++.+.+
T Consensus 191 l~~~~g-------~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~~~~~g 247 (355)
T 1z47_A 191 VHDEMG-------VTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLFVASFIG 247 (355)
T ss_dssp HHHHHT-------CEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHHHHHHTT
T ss_pred HHHhcC-------CEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchHHHHhcC
Confidence 866543 389999999999999999999999999999999999998887776665444
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.6e-26 Score=226.82 Aligned_cols=207 Identities=13% Similarity=0.102 Sum_probs=156.7
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-------cccccCCeeEEecChHHHHHHHhhhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-------RAMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-------~~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
.+....+|++++|+||||||||||+++|+|+++|..| .+....+.. .....+.++|+||++.+|+++ +
T Consensus 24 vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G-~I~i~g~~i~~~~~~~~~~~~r~ig~v~Q~~~l~~~l----t 98 (353)
T 1oxx_K 24 VNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTG-ELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNL----T 98 (353)
T ss_dssp EEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEE-EEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTS----C
T ss_pred eEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCce-EEEECCEECcccccccCChhhCCEEEEeCCCccCCCC----C
Confidence 3445568999999999999999999999999999888 554322111 111235699999999889887 8
Q ss_pred hHHHHHHhccccCCcHHHHH----HHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 199 FLEFASVHGNLYGTSVEAVE----AVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~i~----~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
+.|++.|....++.+..... +.++. ++..+.+-.+..+...++|+...+.+|+.+|++++||||++++|+..++.
T Consensus 99 v~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSGGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~r~~ 178 (353)
T 1oxx_K 99 AFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDS 178 (353)
T ss_dssp HHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGGHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHH
Confidence 99999887655555544332 22322 11111222233334445667777789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccC
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVAN 344 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~ 344 (399)
+++.|+++.++.+ .++|+++||++++...+++++.+.+|++++.+++.+++..|....++.+.+
T Consensus 179 l~~~l~~l~~~~g-------~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~~~~~g 242 (353)
T 1oxx_K 179 ARALVKEVQSRLG-------VTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASLIG 242 (353)
T ss_dssp HHHHHHHHHHHHC-------CEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHHHHHHHS
T ss_pred HHHHHHHHHHhcC-------CEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHHHHHhcC
Confidence 9999998865532 389999999999999999999999999999999999998887776665444
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-23 Score=190.20 Aligned_cols=185 Identities=39% Similarity=0.645 Sum_probs=135.6
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhc-
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHG- 207 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~- 207 (399)
...+|++++|+||||||||||+++|+|+++...+ ...++++.+......+++|+||++..|+.+.....+.++..+.+
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~i~~-~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~~~l~~~~~~~~n 94 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIPNLHF-SVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGG 94 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHSTTCEE-CCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGG
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCCceEE-cccccccCCcccccCCCeeEecCHHHHHHHHhcCCceeehhhcCc
Confidence 3468999999999999999999999999864443 34556655544455678999999988887633333333333444
Q ss_pred -cccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 015825 208 -NLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIK 286 (399)
Q Consensus 208 -~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~ 286 (399)
..|+.+.+.+++.+.++..++++++..+...++...+..+++|+.+|++++||||+++++.+.....++++..+..++.
T Consensus 95 ~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~ 174 (207)
T 1znw_A 95 LHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELA 174 (207)
T ss_dssp TEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHH
T ss_pred hhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh
Confidence 5577777777777777777777788878877777778888899999999999999999976544445555544443433
Q ss_pred hccCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 287 QGKSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 287 ~~~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
. ...++++++|||++++...+++++.+.
T Consensus 175 ~---~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 175 A---QGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp G---GGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred h---hccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 2 124699999999999999999998874
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.90 E-value=2.5e-23 Score=192.10 Aligned_cols=186 Identities=38% Similarity=0.639 Sum_probs=148.5
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccc---eeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGF---SVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~---~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
...+|++++|+||||||||||+++|+|+++ |. .+.++++.++..+.++++|+||++..|+.+...+.++++..+
T Consensus 19 ~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p---G~i~~g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~~~~ 95 (218)
T 1z6g_A 19 SMNNIYPLVICGPSGVGKGTLIKKLLNEFP---NYFYFSVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKNEDFLEYDNY 95 (218)
T ss_dssp ---CCCCEEEECSTTSSHHHHHHHHHHHST---TTEEECCCEECSCCCSSCCBTTTBEECCHHHHHHHHHTTCEEEEEEE
T ss_pred ecCCCCEEEEECCCCCCHHHHHHHHHhhCC---CcEEEeecccCCCCCcccccCCeEEECCHHHHHHhhhccchhhhhhc
Confidence 345899999999999999999999999883 42 223455555544566789999999999887555667777767
Q ss_pred hccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCC--cceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHH
Q 015825 206 HGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASP--LDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKE 283 (399)
Q Consensus 206 ~~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~--~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~ 283 (399)
.++.|+.+...+.+.++.+..+++++++++.+..+... ..++.+|+.+|++++||||++++|..+++.+++++..+..
T Consensus 96 ~~~~~g~~~~~i~~~l~~~~~~il~~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~ 175 (218)
T 1z6g_A 96 ANNFYGTLKSEYDKAKEQNKICLFEMNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNI 175 (218)
T ss_dssp TTEEEEEEHHHHHHHHHTTCEEEEEECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHH
T ss_pred ccccCCCcHHHHHHHHhCCCcEEEEecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 77788888878888888888888899998888776555 4558899999999999999999999999999999998776
Q ss_pred HHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccC
Q 015825 284 EIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDG 318 (399)
Q Consensus 284 ~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~ 318 (399)
+..... ...||.|+++|++++|+..+++++....
T Consensus 176 ~~~~~h-~~~~d~iiv~~~~~ea~~~~~~ii~~~~ 209 (218)
T 1z6g_A 176 ELHEAN-LLNFNLSIINDDLTLTYQQLKNYLLNSY 209 (218)
T ss_dssp HHHHHT-TSCCSEEEECSSHHHHHHHHHHHHHHHT
T ss_pred HHHhhc-ccCCCEEEECCCHHHHHHHHHHHHHHHH
Confidence 544211 2468999999999999999999887654
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=99.90 E-value=3e-26 Score=225.86 Aligned_cols=211 Identities=12% Similarity=0.080 Sum_probs=158.2
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--cccccCCeeEEecChHHHHHHHhhhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVMEKAIKDGKF 199 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~~i~yvfq~~~lf~~~~~~~~~ 199 (399)
+..+.+....+|++++|+||||||||||+++|+|+++|..| .+....+.. .....+.++|+||++.+|+++ ++
T Consensus 15 ~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G-~I~~~g~~i~~~~~~~r~ig~v~Q~~~l~~~l----tv 89 (348)
T 3d31_A 15 SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSG-RILLDGKDVTDLSPEKHDIAFVYQNYSLFPHM----NV 89 (348)
T ss_dssp EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEE-EEEETTEECTTSCHHHHTCEEECTTCCCCTTS----CH
T ss_pred EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCc-EEEECCEECCCCchhhCcEEEEecCcccCCCC----CH
Confidence 33334455679999999999999999999999999999988 555432211 111234689999999889887 88
Q ss_pred HHHHHHhccccCCcH-HHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHH
Q 015825 200 LEFASVHGNLYGTSV-EAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (399)
Q Consensus 200 ~E~~~~~~~~~g~~~-~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~ 277 (399)
.|++.|....++.+. +.+.+.++. ++..+.+-.+..+...++|+...+.+|+.+|++++||||++++|+..++.+++.
T Consensus 90 ~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDEP~s~LD~~~~~~l~~~ 169 (348)
T 3d31_A 90 KKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREM 169 (348)
T ss_dssp HHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHH
Confidence 999888654433222 334444433 221122223334444556677777899999999999999999999999999999
Q ss_pred HHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccC
Q 015825 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVAN 344 (399)
Q Consensus 278 L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~ 344 (399)
|+++.++. ..++|+++||++++...+++++.+.+|++++.+++.+++..|....++.+.+
T Consensus 170 l~~l~~~~-------g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~~a~~~g 229 (348)
T 3d31_A 170 LSVLHKKN-------KLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVASFVG 229 (348)
T ss_dssp HHHHHHHT-------TCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTHHHHHHC
T ss_pred HHHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHHHHHhcC
Confidence 99876543 2389999999999999999999999999999999999999988777765433
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.90 E-value=7.7e-24 Score=193.94 Aligned_cols=184 Identities=42% Similarity=0.673 Sum_probs=158.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~ 210 (399)
.+|++++|+||||||||||+++|++.+++.++..++++|++++..+..+++|+|.+...|..++..+.|.++..+.+++|
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~~~~~~le~~~~~~~~y 85 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYY 85 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHHhcCcEEEEEEEccccC
Confidence 47899999999999999999999999887566688899999998888889999999999998888889999998889999
Q ss_pred CCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccC
Q 015825 211 GTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKS 290 (399)
Q Consensus 211 g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~ 290 (399)
|++...+.+.++.+..+++|+++++...++...+...++|+.+|+.+.+.+|+..|+.++.+.+++++.....++...
T Consensus 86 g~~~~~i~~~l~~g~~vild~~~~g~~~~~~~~~~~~~i~i~~ps~~~l~~Rl~~R~~~~~e~i~~Rl~~~~~e~~~~-- 163 (208)
T 3tau_A 86 GTPLEYVEEKLAAGVDIFLEIEVQGAMQVRKAMPEGIFIFLTPPDLSELKNRIIGRGTESMEVVEERMETAKKEIEMM-- 163 (208)
T ss_dssp EEEHHHHHHHHHTTCCEEEECCHHHHHHHHHHCTTSEEEEEECTTTTTSSCC-------CCHHHHHHHHHHHHHHHHG--
T ss_pred CCcHHHHHHHHHcCCeEEEEeeHHHHHHHHHhCCCeEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhh--
Confidence 999999999999999999999999999888888888899999998999999999999888899999999887665543
Q ss_pred CCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 291 SGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 291 ~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
..+|++++|+++++++..+..++...
T Consensus 164 -~~~d~vivN~~~~~~~~~l~~~i~~~ 189 (208)
T 3tau_A 164 -ASYDYAVVNDVVANAVQKIKGIVETE 189 (208)
T ss_dssp -GGSSEEEECSSHHHHHHHHHHHHHHH
T ss_pred -ccCCEEEECcCHHHHHHHHHHHHHHH
Confidence 46799999999999999999887654
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=99.90 E-value=1.3e-25 Score=221.91 Aligned_cols=202 Identities=13% Similarity=0.076 Sum_probs=153.0
Q ss_pred ccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-------ccccCCeeEEecChHHHHHHHhhh
Q 015825 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-------AMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 125 s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-------~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
+.++...+|++++|+||||||||||+++|+|+++|..| .+....+... ...+.+++|+||++.+|+.+
T Consensus 46 ~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G-~I~i~G~~i~~~~~~~~~~~r~~Ig~v~Q~~~l~~~~---- 120 (366)
T 3tui_C 46 NVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG-SVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSR---- 120 (366)
T ss_dssp EEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE-EEEETTEECSSCCHHHHHHHHTTEEEECSSCCCCTTS----
T ss_pred eeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCce-EEEECCEECCcCCHHHHHHHhCcEEEEeCCCccCCCC----
Confidence 34455679999999999999999999999999999988 5554222111 11235699999998888776
Q ss_pred hhHHHHHHhccccCCcHHHHHHHHHc-----CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 198 KFLEFASVHGNLYGTSVEAVEAVADA-----GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~~~~~i~~~~~~-----g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
++.+++.+....++.+.....+.+.+ ++....+-.+..+...++|++..+.+|+.+|++++||||++++|+.++.
T Consensus 121 TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~~~~~~~~~~LSGGqkQRVaIArAL~~~P~lLLlDEPTs~LD~~~~~ 200 (366)
T 3tui_C 121 TVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDPATTR 200 (366)
T ss_dssp CHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCCTTTSCHHHHHHHHHHHHTTTCCSEEEEESTTTTSCHHHHH
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHH
Confidence 88999888766666665544433322 2111111122233334566677778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchh
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHS 338 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~ 338 (399)
.+.+.|+++.++. ..++++++||++++...+++++.+.+|+++..+++.+++..|....
T Consensus 201 ~i~~lL~~l~~~~-------g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~p~~~~ 259 (366)
T 3tui_C 201 SILELLKDINRRL-------GLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPL 259 (366)
T ss_dssp HHHHHHHHHHHHS-------CCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSSCCSHH
T ss_pred HHHHHHHHHHHhC-------CCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHH
Confidence 9999999886543 3489999999999999999999999999999999888888776443
|
| >3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.4e-22 Score=194.88 Aligned_cols=181 Identities=34% Similarity=0.579 Sum_probs=164.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEec-ChHHHHHHHhhhhhHHHHHHhccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFT-ERSVMEKAIKDGKFLEFASVHGNL 209 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq-~~~lf~~~~~~~~~~E~~~~~~~~ 209 (399)
...++++|+||+ |+|+++.|+...+..++..++||||+++..+.+|..|+|. +.+.|..++..+.|+|+..+.+++
T Consensus 98 ~~~RpvVl~Gp~---K~tl~~~Ll~~~p~~f~~sVs~TTR~pR~gE~dG~dY~Fv~s~e~fe~~i~~~~flE~a~~~gn~ 174 (292)
T 3tvt_A 98 NYTRPVIILGPL---KDRINDDLISEYPDKFGSCVPHTTRPKREYEVDGRDYHFVSSREQMERDIQNHLFIEAGQYNDNL 174 (292)
T ss_dssp SSCCCEEEESTT---HHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CCCCeEEEeCCC---HHHHHHHHHHhChhhccccccCCccCCcCCccCCccccccCCHHHHHHHHhcCceEEEEEEccce
Confidence 467999999994 9999999999998888889999999999999999999997 778899999999999999999999
Q ss_pred cCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhcc
Q 015825 210 YGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGK 289 (399)
Q Consensus 210 ~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~ 289 (399)
||++.+.+++.++.|+.+++|+++++++.++...+.+++||+.+|+++.|.+++..++.++.+.+.+++.++..++
T Consensus 175 YGT~~~~V~~~~~~gk~viLdid~qg~~~lk~~~~~pi~IFI~PpS~e~L~~r~~~r~~e~~~~~~~r~~k~e~e~---- 250 (292)
T 3tvt_A 175 YGTSVASVREVAEKGKHCILDVSGNAIKRLQVAQLYPVAVFIKPKSVDSVMEMNRRMTEEQAKKTYERAIKMEQEF---- 250 (292)
T ss_dssp EEEEHHHHHHHHHHTCEEEECCCTHHHHHHHHTTCCCEEEEECCSCHHHHHHTCTTSCTTHHHHHHHHHHHHHHHH----
T ss_pred eEEehHHHHHHHHcCCcEEEeccchhhhhcccccccceEEEEECCCHHHHHHHHhCCCchhHHHHHHHHHHHHHhh----
Confidence 9999999999999999999999999999999999999999999999999999999998887777777776655444
Q ss_pred CCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 290 SSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 290 ~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
.+.||+||+|+++++|+..+..+|.....
T Consensus 251 -~~~fD~vIvNddle~a~~~l~~iI~~e~~ 279 (292)
T 3tvt_A 251 -GEYFTGVVQGDTIEEIYSKVKSMIWSQSG 279 (292)
T ss_dssp -TTTCSEEECCSSHHHHHHHHHHHHHHHTC
T ss_pred -hhhCCEEEECcCHHHHHHHHHHHHHHhhC
Confidence 34689999999999999999998877654
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.9e-22 Score=194.09 Aligned_cols=152 Identities=20% Similarity=0.181 Sum_probs=123.1
Q ss_pred ceeccEEEEEe-cCCeeEEEEeeeCCCceEEcccccCCC------CCCCCCCCccCccccchhhhhccCCCceEEEEeCC
Q 015825 33 TVIGDKTYVIA-GSDESIGVKIYDRSTGNWLIPAVRGIE------PRPCKGHSAVLLNEDRILVIKKGSSSDDCLWFLEV 105 (399)
Q Consensus 33 ~~vGD~v~~~~-~~~~~~i~~i~~r~~~~l~rp~~an~~------~~~~p~~~~~~l~~dr~L~~~~~~~~~~~i~~~k~ 105 (399)
|+|||||.++. +++.|+|++|+|| ++.|.||.++|+| .+..|.+++..+ ||+|..++..+++++|++||+
T Consensus 44 ~~vGD~V~~~~~~~~~g~I~~i~er-~~~l~r~~~~naD~vliV~d~~~p~~s~~~l--~~~l~~~~~~~~~~ilV~NK~ 120 (302)
T 2yv5_A 44 IYAGDYVWGEVVDPNTFAIEEVEER-KNLLIRPKVANVDRVIIVETLKMPEFNNYLL--DNMLVVYEYFKVEPVIVFNKI 120 (302)
T ss_dssp CCBTCEEEEEEEETTEEEEEEECCC-SCEEETTEEESCCEEEEEECSTTTTCCHHHH--HHHHHHHHHTTCEEEEEECCG
T ss_pred CcCceEEEEEEccCCeEEEEeeCCh-HHHHhHHHHHhcCEEEEEEECCCCCCCHHHH--HHHHHHHHhCCCCEEEEEEcc
Confidence 99999999987 4458999999999 8999999999999 666788899999 999999988999999999999
Q ss_pred Ch--HH----HHH---HHHHhCCeEEEeccC-cc-------CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceee--
Q 015825 106 DT--PY----VRE---QKKVVGAEVVAWSKG-VI-------GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS-- 166 (399)
Q Consensus 106 D~--~~----~~~---l~~~~g~~v~~~s~~-~~-------~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~-- 166 (399)
|. +. .++ ..+.+||+++.+|+. .. ...|++++|+||||||||||+|+|. ...+..| .++
T Consensus 121 DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~gi~~L~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G-~i~~~ 198 (302)
T 2yv5_A 121 DLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEGIDELVDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQ-EVSEK 198 (302)
T ss_dssp GGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTTHHHHHHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCS-CC---
T ss_pred cCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCCHHHHHhhccCcEEEEECCCCCCHHHHHHHHH-HhhCccc-ccccc
Confidence 93 21 222 235679999999876 22 3589999999999999999999999 9888888 554
Q ss_pred -----ecCCCccccccCCeeEEecChHH
Q 015825 167 -----HTTRAPRAMEKDGVHYHFTERSV 189 (399)
Q Consensus 167 -----~ttr~~~~~~~~~i~yvfq~~~l 189 (399)
|+|+.........++|+||++.+
T Consensus 199 ~~~G~~~t~~~~~~~~~~~g~v~d~pg~ 226 (302)
T 2yv5_A 199 TERGRHTTTGVRLIPFGKGSFVGDTPGF 226 (302)
T ss_dssp ------CCCCEEEEEETTTEEEESSCCC
T ss_pred cCCCCCceeeEEEEEcCCCcEEEECcCc
Confidence 35655443333457999998743
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.87 E-value=1.8e-24 Score=205.59 Aligned_cols=206 Identities=12% Similarity=0.066 Sum_probs=145.5
Q ss_pred CCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-----------------ccccCCe
Q 015825 118 GAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-----------------AMEKDGV 180 (399)
Q Consensus 118 g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-----------------~~~~~~i 180 (399)
|...+..+.+....+|++++|+||||||||||+++|+|+++|..| .+........ ......+
T Consensus 17 ~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~i 95 (262)
T 1b0u_A 17 GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEG-AIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRL 95 (262)
T ss_dssp TTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEETTEECCEEECTTSSEEESCHHHHHHHHHHE
T ss_pred CCEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEEccccccccccccccChhhHHHHhcce
Confidence 333444444455679999999999999999999999999999888 5544322111 0112358
Q ss_pred eEEecChHHHHHHHhhhhhHHHHHHhc-cccCCcHHH----HHHHHHc-CCceE-EecchhhHHHHHcCCcceeEEEEcC
Q 015825 181 HYHFTERSVMEKAIKDGKFLEFASVHG-NLYGTSVEA----VEAVADA-GKRCI-LDIDVQGARSVRASPLDAIFIFICP 253 (399)
Q Consensus 181 ~yvfq~~~lf~~~~~~~~~~E~~~~~~-~~~g~~~~~----i~~~~~~-g~~~v-ldld~~g~~~l~~~~~~~~~ili~~ 253 (399)
+|+||++.+|+.+ ++.|++.+.. ..++.+... +.+.++. +.... .+-.+..+....+|+...+.+|+.+
T Consensus 96 ~~v~Q~~~l~~~l----tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGq~qRv~lAraL~~~ 171 (262)
T 1b0u_A 96 TMVFQHFNLWSHM----TVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAME 171 (262)
T ss_dssp EEECSSCCCCTTS----CHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHHHTC
T ss_pred EEEecCcccCCCC----cHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchhhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 9999998777766 7888887743 333443322 2223322 11111 1212222333345666777799999
Q ss_pred CChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 254 P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
|++++||||++++|+.+++.+.+.++++.++ ..++|+++||++++...+++++.+.+|.++..+++.+++..
T Consensus 172 p~lllLDEPts~LD~~~~~~~~~~l~~l~~~--------g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 243 (262)
T 1b0u_A 172 PDVLLFDEPTSALDPELVGEVLRIMQQLAEE--------GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGN 243 (262)
T ss_dssp CSEEEEESTTTTSCHHHHHHHHHHHHHHHHT--------TCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHhC--------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999887532 23899999999999999999999999999888887777665
Q ss_pred Ccc
Q 015825 334 PAD 336 (399)
Q Consensus 334 p~~ 336 (399)
|..
T Consensus 244 ~~~ 246 (262)
T 1b0u_A 244 PQS 246 (262)
T ss_dssp CCS
T ss_pred cch
Confidence 543
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.7e-22 Score=179.43 Aligned_cols=175 Identities=25% Similarity=0.561 Sum_probs=142.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~ 210 (399)
++|++++|+||||||||||+++|++.+++.+...++++|++++..+..+.+|+|.+...|..++..+.++++..+.+++|
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~n~y 82 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMY 82 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHHHHcCCceEEEEEcCccc
Confidence 57899999999999999999999998875343488999999988888889999999988888877778888888888899
Q ss_pred CCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccC
Q 015825 211 GTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKS 290 (399)
Q Consensus 211 g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~ 290 (399)
+.+.+.+.+.++.+..+++++++++...++........+|+.+|+++.|.+| .+.+ +++.+...++.. ..
T Consensus 83 g~~~~~i~~~l~~g~~vil~id~~g~~~~~~~~~~~~~ifi~~p~~~~l~~R--------~~~i-~r~~~~~~~~~~-~~ 152 (180)
T 1kgd_A 83 GTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITPGLNE--------DESL-QRLQKESDILQR-TY 152 (180)
T ss_dssp EEEHHHHHHHHHTTCEEEEECCGGGHHHHSSTTTCEEEEEEECCSCCTTSCC--------SHHH-HHHHHHHHHHHH-HH
T ss_pred cccHHHHHHHHHCCCeEEEEECHHHHHHHHHhCCCcEEEEEECCCHHHHHhh--------HHHH-HHHHHHHHHHHH-hh
Confidence 9999989999999999999999999999887777788899999988877665 2455 455555444421 11
Q ss_pred CCcceEEEeCCCHHHHHHHHHHhhc
Q 015825 291 SGIFDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 291 ~~~~t~Viv~hdleea~~~l~~ii~ 315 (399)
.+.||++++|++++++++.+..++.
T Consensus 153 ~~~~d~~i~n~~~~~~~~~l~~~i~ 177 (180)
T 1kgd_A 153 AHYFDLTIINNEIDETIRHLEEAVE 177 (180)
T ss_dssp GGGCSEEEECSSHHHHHHHHHHHHH
T ss_pred hCCCcEEEECcCHHHHHHHHHHHHH
Confidence 3568999999999999999988764
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.4e-24 Score=203.63 Aligned_cols=204 Identities=16% Similarity=0.111 Sum_probs=144.6
Q ss_pred eEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc------ccccCCeeEEecChHHHHHH
Q 015825 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR------AMEKDGVHYHFTERSVMEKA 193 (399)
Q Consensus 120 ~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~------~~~~~~i~yvfq~~~lf~~~ 193 (399)
..+..+.+....+|++++|+||||||||||+++|+|+++|..| .+........ ......++|+||++.+|+.+
T Consensus 37 ~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G-~I~~~g~~i~~~~~~~~~~~~~i~~v~Q~~~l~~~~ 115 (263)
T 2olj_A 37 LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEG-EIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHM 115 (263)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEETTEESSSTTCCHHHHHHHEEEECSSCCCCTTS
T ss_pred EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCc-EEEECCEECCCccccHHHHhCcEEEEeCCCcCCCCC
Confidence 3344444455679999999999999999999999999999888 5554322110 11123589999998777665
Q ss_pred HhhhhhHHHHHHhc-cccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCC
Q 015825 194 IKDGKFLEFASVHG-NLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARG 267 (399)
Q Consensus 194 ~~~~~~~E~~~~~~-~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD 267 (399)
++.|++.+.. ..++.+... +.+.++. +.....+-.+..+....+|+...+.+|+.+|++++||||++++|
T Consensus 116 ----tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p~lllLDEPts~LD 191 (263)
T 2olj_A 116 ----TVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALD 191 (263)
T ss_dssp ----CHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSC
T ss_pred ----CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHCCCCEEEEeCCcccCC
Confidence 7888887743 333433322 2233332 11111111222333345566777789999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcc
Q 015825 268 TETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPAD 336 (399)
Q Consensus 268 ~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~ 336 (399)
+.+++.+.+.|+++.++ ..++++++||++++...+++++.+.+|.++..+++.+++..|..
T Consensus 192 ~~~~~~~~~~l~~l~~~--------g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~ 252 (263)
T 2olj_A 192 PEMVGEVLSVMKQLANE--------GMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQH 252 (263)
T ss_dssp HHHHHHHHHHHHHHHHT--------TCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHHHhC--------CCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCccc
Confidence 99999999999887532 23889999999999999999999999999888877777665543
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.4e-21 Score=177.09 Aligned_cols=183 Identities=36% Similarity=0.576 Sum_probs=151.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~ 210 (399)
.+|++++|+||||||||||+++|+++++. ......++++.+...+..+++|+||++..|+.+...+.+.++..+.+..|
T Consensus 5 ~~g~ii~l~Gp~GsGKSTl~~~L~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (205)
T 3tr0_A 5 NKANLFIISAPSGAGKTSLVRALVKALAE-IKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHATIYERHY 83 (205)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHHSSS-EEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEE
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCC-eEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeeeeeecccc
Confidence 47899999999999999999999999753 22244456666665566778999999999988765556666666777788
Q ss_pred CCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccC
Q 015825 211 GTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKS 290 (399)
Q Consensus 211 g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~ 290 (399)
+.+...+.+.+..+..+++++++++...++........+++.+|+.+++.+|+..|+..+.+.+++++.....++..
T Consensus 84 ~~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~--- 160 (205)
T 3tr0_A 84 GTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPPSIEALRERLIKRRQDDTAIIEQRLALAREEMAH--- 160 (205)
T ss_dssp EEEHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCSSTHHHHHHHHHHHHTT---
T ss_pred cchHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhc---
Confidence 88888888888999999999999898888877777888999999999999999999988888999999887665543
Q ss_pred CCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 291 SGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 291 ~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
...+|+|++|++++++...+.+++...
T Consensus 161 ~~~~d~vi~n~~~~~~~~~l~~~i~~~ 187 (205)
T 3tr0_A 161 YKEFDYLVVNDNFDQAVQNLIHIISAE 187 (205)
T ss_dssp GGGCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred ccCCCEEEECCCHHHHHHHHHHHHHHH
Confidence 246799999999999999999887644
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-23 Score=195.93 Aligned_cols=191 Identities=13% Similarity=0.080 Sum_probs=135.0
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc---c-----cccCCeeEEecChHHHHHHHhhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR---A-----MEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~---~-----~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
.+....+|++++|+||||||||||+++|+|+++|..| .+........ . .....++|+||++.+|+.+
T Consensus 24 isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G-~I~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~l~~~~---- 98 (235)
T 3tif_A 24 VNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG-EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL---- 98 (235)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTS----
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCce-EEEECCEEcccCCHHHHHHHhhccEEEEecCCccCCCC----
Confidence 3455679999999999999999999999999999999 6654322111 0 0123589999998877766
Q ss_pred hhHHHHHHhcccc---CCcHHHH----HHHHHc-CCce-EEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCC
Q 015825 198 KFLEFASVHGNLY---GTSVEAV----EAVADA-GKRC-ILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGT 268 (399)
Q Consensus 198 ~~~E~~~~~~~~~---g~~~~~i----~~~~~~-g~~~-vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~ 268 (399)
++.|++.+....+ +...... .+.+.. +... ..+..+..+....+|+...+.+|+.+|++++||||++++|+
T Consensus 99 tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAral~~~p~llllDEPts~LD~ 178 (235)
T 3tif_A 99 TALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDS 178 (235)
T ss_dssp CHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCH
T ss_pred cHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCH
Confidence 7888887643221 2333322 222222 1111 01222333344456677778899999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcc
Q 015825 269 ETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPK 329 (399)
Q Consensus 269 ~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~ 329 (399)
.+++.+.+.++++.++. ..++|+++||++.+ ..+++++.+.+|.++..+++.+
T Consensus 179 ~~~~~i~~~l~~l~~~~-------g~tvi~vtHd~~~~-~~~d~i~~l~~G~i~~~~~~~~ 231 (235)
T 3tif_A 179 KTGEKIMQLLKKLNEED-------GKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKLRG 231 (235)
T ss_dssp HHHHHHHHHHHHHHHHH-------CCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEECC-
T ss_pred HHHHHHHHHHHHHHHHc-------CCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEcChhh
Confidence 99999999999876543 23899999999854 7899999999998887665443
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.2e-22 Score=185.71 Aligned_cols=186 Identities=34% Similarity=0.498 Sum_probs=133.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhh-hccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcc
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLM-KEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGN 208 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~-~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~ 208 (399)
..+|++++|+||||||||||+++|+ +++++. ...+.++++.+...+..+.+|+|++...|..+...+.+.++..+.++
T Consensus 24 v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~-~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (231)
T 3lnc_A 24 KSVGVILVLSSPSGCGKTTVANKLLEKQKNNI-VKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCSNGEIIEHAEVFGN 102 (231)
T ss_dssp EECCCEEEEECSCC----CHHHHHHC----CE-EECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhcCCCCc-ccccccCCCCCCccccCCCeEEEecHHHhhhhhhcCceehhhhhccc
Confidence 4589999999999999999999999 998764 33667888888777777788999999888877665566666666677
Q ss_pred ccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCC-cceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHh
Q 015825 209 LYGTSVEAVEAVADAGKRCILDIDVQGARSVRASP-LDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQ 287 (399)
Q Consensus 209 ~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~-~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~ 287 (399)
.|+.+...+.+.+..+..+++++++.+...++... .....+|+.+|+.+++++|+.+||..+++++++++.....++..
T Consensus 103 ~~~~~~~~i~~~~~~~~~vild~~~~g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~ 182 (231)
T 3lnc_A 103 FYGVPRKNLEDNVDKGVSTLLVIDWQGAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRADDSEVVEARLKGAAFEISH 182 (231)
T ss_dssp EEEEECTTHHHHHHHTCEEEEECCHHHHHHHHHHSGGGEEEEEEECSCHHHHHHC--------------CHHHHHHHHTT
T ss_pred cCCCCHHHHHHHHHcCCeEEEEcCHHHHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 78877777777788889999999998888877665 56778899999999999999999999999999999887665543
Q ss_pred ccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 288 GKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 288 ~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
...+|+|++|++++++.+.+.+++....+
T Consensus 183 ---~~~~d~vI~n~~~e~~~~~l~~~i~~~~~ 211 (231)
T 3lnc_A 183 ---CEAYDYVIVNEDIEETADRISNILRAEQM 211 (231)
T ss_dssp ---GGGSSEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred ---hcCCeEEEECcCHHHHHHHHHHHHHHHhh
Confidence 34679999999999999999998876544
|
| >1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A | Back alignment and structure |
|---|
Probab=99.85 E-value=4.3e-21 Score=185.11 Aligned_cols=180 Identities=39% Similarity=0.622 Sum_probs=158.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEec-ChHHHHHHHhhhhhHHHHHHhccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFT-ERSVMEKAIKDGKFLEFASVHGNL 209 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq-~~~lf~~~~~~~~~~E~~~~~~~~ 209 (399)
..+++++|+|| ||+||++.|....+..++..++||||+++.++.+|..|+|. +.+.|..++..+.|+|+..+.+++
T Consensus 103 ~~~r~ivl~GP---gK~tl~~~L~~~~~~~~~~~vs~TTR~~R~gE~~G~dY~Fv~s~eef~~~i~~g~flE~~~~~g~~ 179 (295)
T 1kjw_A 103 HYARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHL 179 (295)
T ss_dssp CSCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEE
T ss_pred CCCCEEEEECC---CHHHHHHHHHhhCccceeeeeeecccCCCCccccCceeEecCCHHHHHHHHHCCCcEEEEEEcCcE
Confidence 46899999999 79999999999887667778999999999999999999999 999999999999999999999999
Q ss_pred cCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHH-HHHhc
Q 015825 210 YGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKE-EIKQG 288 (399)
Q Consensus 210 ~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~-~l~~~ 288 (399)
||++.+.+++.++.|+.+++++++++++.++.....++++|+.+|++..|.+ +.+|+ +.+++++++.++.. ++..
T Consensus 180 YGt~~~~V~~~~~~G~~vildid~~g~~~l~~~~~~pi~IfI~pps~~~L~~-L~~R~--t~~~i~~rl~~a~~~e~~~- 255 (295)
T 1kjw_A 180 YGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLE-INKRI--TEEQARKAFDRATKLEQEF- 255 (295)
T ss_dssp EEEEHHHHHHHHHTTCEEEECCCTTHHHHHHHTTCCCEEEEECCSSHHHHHH-HCTTS--CHHHHHHHHHHHHHHHHHH-
T ss_pred eeeeHHHHHHHHhcCCeEEEEeCHHHHHHHHhcccCCeEEEEECCCHHHHHH-HHhcC--CHHHHHHHHHHHHHHHHhc-
Confidence 9999999999999999999999999998888766677999999999999988 87776 45778889988742 4433
Q ss_pred cCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 289 KSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 289 ~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
.+.||++|+|+++++|+..+..++.....
T Consensus 256 --~~~fd~vivNd~le~a~~~l~~ii~~~~~ 284 (295)
T 1kjw_A 256 --TECFSAIVEGDSFEEIYHKVKRVIEDLSG 284 (295)
T ss_dssp --GGGCSEEECCSSHHHHHHHHHHHHHHHSC
T ss_pred --cccCeEEEECcCHHHHHHHHHHHHHhccC
Confidence 34689999999999999999998865543
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=99.85 E-value=6.1e-24 Score=203.13 Aligned_cols=201 Identities=11% Similarity=0.055 Sum_probs=145.1
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc------cccccCCeeEEecChH-HHHHHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP------RAMEKDGVHYHFTERS-VMEKAI 194 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~------~~~~~~~i~yvfq~~~-lf~~~~ 194 (399)
+..+.+....+|++++|+||||||||||+++|+|+++|..| .+....... ....+..++|+||++. .+..+
T Consensus 23 ~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G-~I~~~G~~i~~~~~~~~~~~~~ig~v~Q~~~~~~~~~- 100 (275)
T 3gfo_A 23 ALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSG-RILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSA- 100 (275)
T ss_dssp EEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEETTEECCCSHHHHHHHHHSEEEECSSGGGTCCSS-
T ss_pred EEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCe-EEEECCEECCcccccHHHHhCcEEEEEcCcccccccC-
Confidence 33334455569999999999999999999999999999888 565433221 1112346999999874 22233
Q ss_pred hhhhhHHHHHHhccccCCcHHHHHHH----HHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 195 KDGKFLEFASVHGNLYGTSVEAVEAV----ADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g~~~~~i~~~----~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
++.+++.+....++.+.....+. ++. +...+.+-.+..+....+|++..+.+|+.+|++++||||++++|+.
T Consensus 101 ---tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P~lLlLDEPts~LD~~ 177 (275)
T 3gfo_A 101 ---SVYQDVSFGAVNMKLPEDEIRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPM 177 (275)
T ss_dssp ---BHHHHHHHHHHTSCCCHHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCCHH
T ss_pred ---cHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHH
Confidence 78888887665566555443332 222 1211112223333334566777778999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
++..+.+.++++.++. ..++++++||++++...+++++.+.+|+++..+++.+++..+
T Consensus 178 ~~~~i~~~l~~l~~~~-------g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 235 (275)
T 3gfo_A 178 GVSEIMKLLVEMQKEL-------GITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK 235 (275)
T ss_dssp HHHHHHHHHHHHHHHH-------CCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHHH
T ss_pred HHHHHHHHHHHHHhhC-------CCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcCH
Confidence 9999999999876322 238999999999999899999999999999988888776543
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=99.85 E-value=1.6e-23 Score=194.49 Aligned_cols=192 Identities=14% Similarity=0.054 Sum_probs=134.6
Q ss_pred eEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc-------c-ccCCeeEEecChHHHH
Q 015825 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA-------M-EKDGVHYHFTERSVME 191 (399)
Q Consensus 120 ~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~-------~-~~~~i~yvfq~~~lf~ 191 (399)
..+..+.+....+|++++|+||||||||||+++|+|+++|..| .+......... . ....++|+||++.+|+
T Consensus 17 ~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~ 95 (224)
T 2pcj_A 17 YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEG-KVFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIP 95 (224)
T ss_dssp EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEE-EEEETTEECCSSCHHHHHHHHHHHEEEECSSCCCCT
T ss_pred EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEECCCCCHHHHHHHHhCcEEEEecCcccCC
Confidence 3334444455669999999999999999999999999999888 55442221110 0 1135899999987776
Q ss_pred HHHhhhhhHHHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhC
Q 015825 192 KAIKDGKFLEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (399)
Q Consensus 192 ~~~~~~~~~E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~l 266 (399)
.+ ++.|++.+....++.+... +.+.++. +.....+-.+..+....+|+...+.+|+.+|++++||||++++
T Consensus 96 ~~----tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~laral~~~p~lllLDEPt~~L 171 (224)
T 2pcj_A 96 EL----TALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGNL 171 (224)
T ss_dssp TS----CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCTTCTTCCGGGSCHHHHHHHHHHHHTTTCCSEEEEESTTTTC
T ss_pred CC----CHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCCCCC
Confidence 65 7888877654444433222 2233332 2211122223333334566677778999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecC
Q 015825 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQ 325 (399)
Q Consensus 267 D~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~ 325 (399)
|+.+++.+.+.++++.++ ..++++++||++.+ ..+++++.+.+|.++..+
T Consensus 172 D~~~~~~~~~~l~~l~~~--------g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g 221 (224)
T 2pcj_A 172 DSANTKRVMDIFLKINEG--------GTSIVMVTHERELA-ELTHRTLEMKDGKVVGEI 221 (224)
T ss_dssp CHHHHHHHHHHHHHHHHT--------TCEEEEECSCHHHH-TTSSEEEEEETTEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHC--------CCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEe
Confidence 999999999999887543 23889999999887 778999999998877654
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.84 E-value=1.8e-23 Score=196.14 Aligned_cols=194 Identities=13% Similarity=0.101 Sum_probs=140.4
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--cccccCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
....+ ++++|+||||||||||+++|+|+++|..| .+....... .......++|+||++.+|+.+ ++.|++.+
T Consensus 20 l~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~i~~v~q~~~l~~~l----tv~enl~~ 93 (240)
T 2onk_A 20 FEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRG-EVRLNGADITPLPPERRGIGFVPQDYALFPHL----SVYRNIAY 93 (240)
T ss_dssp EEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEE-EEEETTEECTTSCTTTSCCBCCCSSCCCCTTS----CHHHHHHT
T ss_pred EEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCce-EEEECCEECCcCchhhCcEEEEcCCCccCCCC----cHHHHHHH
Confidence 44557 99999999999999999999999999888 554422111 111134589999998777665 78888877
Q ss_pred hccccCCc--HHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 015825 206 HGNLYGTS--VEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAK 282 (399)
Q Consensus 206 ~~~~~g~~--~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~ 282 (399)
....++.. .+.+.+.++. +.....+-.+..+....+|+...+.+|+.+|++++||||++++|+.+++.+.+.+.++.
T Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~ 173 (240)
T 2onk_A 94 GLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQ 173 (240)
T ss_dssp TCTTSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCchHHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHH
Confidence 54433322 1223333332 11111122233333345666777789999999999999999999999999999999875
Q ss_pred HHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 283 EEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 283 ~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
++. ..++++++||++++...+++++.+.+|+++..+++.+++..+
T Consensus 174 ~~~-------g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 174 REF-------DVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp HHH-------TCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred Hhc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 432 238999999999999999999999999998888777776555
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.84 E-value=2e-23 Score=197.68 Aligned_cols=202 Identities=14% Similarity=0.112 Sum_probs=143.0
Q ss_pred hCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc---cccccCCeeEEecChHHHHHH
Q 015825 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP---RAMEKDGVHYHFTERSVMEKA 193 (399)
Q Consensus 117 ~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~---~~~~~~~i~yvfq~~~lf~~~ 193 (399)
++...+..+.+....+|++++|+||||||||||+++|+|+++|..| .+....... .......++|+||++.+|+.+
T Consensus 25 y~~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G-~I~~~g~~~~~~~~~~~~~i~~v~q~~~l~~~l 103 (256)
T 1vpl_A 25 IGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG-IVTVFGKNVVEEPHEVRKLISYLPEEAGAYRNM 103 (256)
T ss_dssp ETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEETTEETTTCHHHHHTTEEEECTTCCCCTTS
T ss_pred ECCEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEECCEECCccHHHHhhcEEEEcCCCCCCCCC
Confidence 3434444444555679999999999999999999999999999888 555422211 111234689999998777655
Q ss_pred HhhhhhHHHHHHhccccCCcHHH----HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCC
Q 015825 194 IKDGKFLEFASVHGNLYGTSVEA----VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGT 268 (399)
Q Consensus 194 ~~~~~~~E~~~~~~~~~g~~~~~----i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~ 268 (399)
++.|++.+....++..... +.+.++. +.....+-.+..+....+|+...+.+|+.+|++++||||++++|+
T Consensus 104 ----tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~ 179 (256)
T 1vpl_A 104 ----QGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDV 179 (256)
T ss_dssp ----BHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCH
T ss_pred ----cHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccccCH
Confidence 7888887754444444322 2233322 221111112222333455667777899999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcccc
Q 015825 269 ETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 269 ~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
.++..+.+.|+++.++ ..++++++|+++++...+++++.+.+|.++..+++.++.
T Consensus 180 ~~~~~l~~~l~~l~~~--------g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 234 (256)
T 1vpl_A 180 LNAREVRKILKQASQE--------GLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELK 234 (256)
T ss_dssp HHHHHHHHHHHHHHHT--------TCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHHHHHHHHHHHHhC--------CCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHH
Confidence 9999999999886532 238899999999998889999999999988777666554
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=99.84 E-value=2.5e-23 Score=198.01 Aligned_cols=205 Identities=14% Similarity=0.069 Sum_probs=145.7
Q ss_pred hCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHH
Q 015825 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEK 192 (399)
Q Consensus 117 ~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~ 192 (399)
++...+..+.+....+|++++|+||||||||||+++|+|+++|..| .+....... .......++|+||++.+++.
T Consensus 21 ~~~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G-~I~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~ 99 (266)
T 4g1u_C 21 VQQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHG-ECHLLGQNLNSWQPKALARTRAVMRQYSELAFP 99 (266)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSC-EEEETTEETTTSCHHHHHHHEEEECSCCCCCSC
T ss_pred eCCeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-EEEECCEECCcCCHHHHhheEEEEecCCccCCC
Confidence 3434444444555679999999999999999999999999999999 665432211 11112347999998766544
Q ss_pred HHhhhhhHHHHHHhccccCC--cHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEc------CCChHHHHHHH
Q 015825 193 AIKDGKFLEFASVHGNLYGT--SVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFIC------PPSMEELEERL 263 (399)
Q Consensus 193 ~~~~~~~~E~~~~~~~~~g~--~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~------~P~lllLDEpl 263 (399)
+ ++.|++.+....+.. ..+.+.+.++. +.....+-.+..+....+|+...+.+|+. +|++++||||+
T Consensus 100 ~----tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~p~lLllDEPt 175 (266)
T 4g1u_C 100 F----SVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPT 175 (266)
T ss_dssp C----BHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCCCEEEEECCCC
T ss_pred C----CHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCCCEEEEeCcc
Confidence 4 788888776544322 23334444433 21111112222333345666777778888 99999999999
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 264 RARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 264 ~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+++|+.++..+.+.++++.++ +..++++++||++++...+++++.+.+|+++..+++.+++..
T Consensus 176 s~LD~~~~~~i~~~l~~l~~~-------~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 238 (266)
T 4g1u_C 176 SALDLYHQQHTLRLLRQLTRQ-------EPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNA 238 (266)
T ss_dssp SSCCHHHHHHHHHHHHHHHHH-------SSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCCH
T ss_pred ccCCHHHHHHHHHHHHHHHHc-------CCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhCc
Confidence 999999999999999987644 234889999999999999999999999999998887776654
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.9e-23 Score=197.88 Aligned_cols=199 Identities=13% Similarity=0.121 Sum_probs=140.7
Q ss_pred CCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----cccccCCeeEEecChHHHHH
Q 015825 118 GAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSVMEK 192 (399)
Q Consensus 118 g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~lf~~ 192 (399)
+...+..+.+....+|++++|+||||||||||+++|+|+++|..| .+....... ......+++|+||++.+|+.
T Consensus 18 ~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 96 (257)
T 1g6h_A 18 GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEG-RVYFENKDITNKEPAELYHYGIVRTFQTPQPLKE 96 (257)
T ss_dssp TTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEECTTCCHHHHHHHTEEECCCCCGGGGG
T ss_pred CCEeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEECCEECCCCCHHHHHhCCEEEEccCCccCCC
Confidence 334444445555679999999999999999999999999999888 555432211 11112458999999877776
Q ss_pred HHhhhhhHHHHHHhccc--cC-----------Cc-H---HHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCC
Q 015825 193 AIKDGKFLEFASVHGNL--YG-----------TS-V---EAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPP 254 (399)
Q Consensus 193 ~~~~~~~~E~~~~~~~~--~g-----------~~-~---~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P 254 (399)
+ ++.|++.+.... ++ .. . ..+.+.++. +.....+-.+..+...++|+...+.+|+.+|
T Consensus 97 ~----tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGqkQrv~iAraL~~~p 172 (257)
T 1g6h_A 97 M----TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMTNP 172 (257)
T ss_dssp S----BHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCC
T ss_pred C----cHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchhhCCCchhCCHHHHHHHHHHHHHHcCC
Confidence 5 888888775332 12 11 1 222333332 1111111122233334566677778999999
Q ss_pred ChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCcc
Q 015825 255 SMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPK 329 (399)
Q Consensus 255 ~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~ 329 (399)
++++||||++++|+.+++.+.+.++++.++ ..++|+++||++++...+++++.+.+|.++..+++.+
T Consensus 173 ~lllLDEPts~LD~~~~~~l~~~l~~l~~~--------g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 173 KMIVMDEPIAGVAPGLAHDIFNHVLELKAK--------GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHT--------TCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHC--------CCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 999999999999999999999999887532 2388999999999988899999999999887777666
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.3e-23 Score=194.34 Aligned_cols=203 Identities=11% Similarity=0.029 Sum_probs=138.4
Q ss_pred CCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----cccccCCeeEEecChHHHHH
Q 015825 118 GAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSVMEK 192 (399)
Q Consensus 118 g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~lf~~ 192 (399)
+...+..+.+....+|++++|+||||||||||+++|+|+++|..| .+....... ......+++|+||++.+|+.
T Consensus 17 ~~~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~i~~v~q~~~l~~~ 95 (240)
T 1ji0_A 17 GAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKG-KIIFNGQDITNKPAHVINRMGIALVPEGRRIFPE 95 (240)
T ss_dssp TTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEECTTCCHHHHHHTTEEEECSSCCCCTT
T ss_pred CCeeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-eEEECCEECCCCCHHHHHhCCEEEEecCCccCCC
Confidence 333344444455669999999999999999999999999999888 555432211 11113459999999877766
Q ss_pred HHhhhhhHHHHHHhcccc-CCc--HHHHHHHHHcC--CceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCC
Q 015825 193 AIKDGKFLEFASVHGNLY-GTS--VEAVEAVADAG--KRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARG 267 (399)
Q Consensus 193 ~~~~~~~~E~~~~~~~~~-g~~--~~~i~~~~~~g--~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD 267 (399)
+ ++.|++.+....+ ... .+.+.+.++.- .....+-.+..+....+|+...+.+|+.+|++++||||++++|
T Consensus 96 l----tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD 171 (240)
T 1ji0_A 96 L----TVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLA 171 (240)
T ss_dssp S----BHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTTTCC
T ss_pred C----cHHHHHHHhhhcCCCHHHHHHHHHHHHHHcccHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCcccCC
Confidence 5 7888887753211 111 11222222110 0000011111122234455666779999999999999999999
Q ss_pred CCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 268 TETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 268 ~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+.+++.+.+.|+++.++ ..++++++||++++...+++++.+.+|+++..+++.++...
T Consensus 172 ~~~~~~l~~~l~~~~~~--------g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 172 PILVSEVFEVIQKINQE--------GTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp HHHHHHHHHHHHHHHHT--------TCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHC--------CCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 99999999999886531 23899999999999999999999999998877766655543
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=99.83 E-value=4.2e-20 Score=168.22 Aligned_cols=185 Identities=38% Similarity=0.686 Sum_probs=153.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~ 210 (399)
-+|++++|+|||||||||+++.|...++..+...++||||+++..+..+..|.|.+.+.|..+...+.|.++..+.+++|
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFERKLKEGQFLEFDKYANNFY 89 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHHHHHcCCCEEeHHhCCCee
Confidence 47899999999999999999999988754245578899999998888888899999888888777778888877778889
Q ss_pred CCcHHHHHHHHHcCCceEEecchhhHHHHHcCCc--ceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhc
Q 015825 211 GTSVEAVEAVADAGKRCILDIDVQGARSVRASPL--DAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQG 288 (399)
Q Consensus 211 g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~--~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~ 288 (399)
+.+.+.+...++.+..+++|.++++.+.++.... ....+|+.+++.+++.+|+..|+..+.+.+.+++.....++...
T Consensus 90 ~~~~~~i~~~l~~g~~vi~d~~~~~~~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~ 169 (204)
T 2qor_A 90 GTLKSEYDLAVGEGKICLFEMNINGVKQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNTEKPEEINKRMQELTREMDEA 169 (204)
T ss_dssp EEEHHHHHHHHHTTCEEEEECCHHHHHHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh
Confidence 9998888888889999999999999888876655 56788888788999999999998778889998888876555310
Q ss_pred cCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 289 KSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 289 ~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
....+|.+++|++++++++.+..++..
T Consensus 170 -~~~~~d~vi~n~~~e~~~~~i~~~i~~ 196 (204)
T 2qor_A 170 -DKVGFNYFIVNDDLARTYAELREYLLG 196 (204)
T ss_dssp -HHHTCSEEEECSSHHHHHHHHHHHHHH
T ss_pred -hhccCcEEEECcCHHHHHHHHHHHHHH
Confidence 123568889999999999998887653
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.3e-23 Score=204.95 Aligned_cols=197 Identities=15% Similarity=0.105 Sum_probs=142.9
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
+...+|++++|+||||||||||+++|+|+++ ..| .+....+... ...++.++|+||++.+|+ + ++.+++
T Consensus 42 l~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G-~I~i~G~~i~~~~~~~~rr~ig~v~Q~~~lf~-~----tv~enl 114 (390)
T 3gd7_A 42 FSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG-EIQIDGVSWDSITLEQWRKAFGVIPQKVFIFS-G----TFRKNL 114 (390)
T ss_dssp EEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEE-EEEESSCBTTSSCHHHHHHTEEEESCCCCCCS-E----EHHHHH
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCe-EEEECCEECCcCChHHHhCCEEEEcCCcccCc-c----CHHHHh
Confidence 4456999999999999999999999999987 778 6654332211 112346999999998775 3 778887
Q ss_pred HHhccccCCcHHHHHHHHHc-CCceEEecchhh-----------HHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-GKRCILDIDVQG-----------ARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g-----------~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+... ...+.+.+.++. ++..+++-.+.. +...++|+...+.+|+.+|++++||||++++|+..+
T Consensus 115 ~~~~~---~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~P~lLLLDEPts~LD~~~~ 191 (390)
T 3gd7_A 115 DPNAA---HSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTY 191 (390)
T ss_dssp CTTCC---SCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHH
T ss_pred hhccc---cCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHH
Confidence 64322 234444444432 111111111211 333455666777799999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcccC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVAN 344 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~~ 344 (399)
..+++.|+++. ...++++++|+++ ++..+++++.+.+|++++.+++.+++..|...+++.+.+
T Consensus 192 ~~l~~~l~~~~---------~~~tvi~vtHd~e-~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~va~f~g 254 (390)
T 3gd7_A 192 QIIRRTLKQAF---------ADCTVILCEARIE-AMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFIG 254 (390)
T ss_dssp HHHHHHHHTTT---------TTSCEEEECSSSG-GGTTCSEEEEEETTEEEEESSHHHHHHCCSBHHHHHHSS
T ss_pred HHHHHHHHHHh---------CCCEEEEEEcCHH-HHHhCCEEEEEECCEEEEECCHHHHHhCCCchHHHhhcC
Confidence 88888776531 1358999999975 556799999999999999999999999999888887654
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-22 Score=190.64 Aligned_cols=189 Identities=11% Similarity=0.051 Sum_probs=135.5
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
+..+.+....+|++++|+||||||||||+++|+|+++|..| .+. ....++|+||++.+++.+ ++.|
T Consensus 20 vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G-~I~---------~~~~i~~v~q~~~~~~~~----tv~e 85 (253)
T 2nq2_C 20 LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQG-KIE---------VYQSIGFVPQFFSSPFAY----SVLD 85 (253)
T ss_dssp EEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEE-EEE---------ECSCEEEECSCCCCSSCC----BHHH
T ss_pred EEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEE---------EeccEEEEcCCCccCCCC----CHHH
Confidence 33334445569999999999999999999999999999988 554 123489999998776544 7888
Q ss_pred HHHHhcccc-C----CcH---HHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 202 FASVHGNLY-G----TSV---EAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 202 ~~~~~~~~~-g----~~~---~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
++.+....+ + ... +.+.+.++. +.....+-.+..+....+|+...+.+|+.+|++++||||++++|+.+++
T Consensus 86 nl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEPts~LD~~~~~ 165 (253)
T 2nq2_C 86 IVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQD 165 (253)
T ss_dssp HHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSSSTTSCHHHHH
T ss_pred HHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHH
Confidence 887653221 1 111 223333332 2211112222333334566677778999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
.+.+.+.++.++ ...++++++||++++...+++++.+.+|. +..+++.++..
T Consensus 166 ~l~~~l~~l~~~-------~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~ 217 (253)
T 2nq2_C 166 IVLSLLIDLAQS-------QNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILT 217 (253)
T ss_dssp HHHHHHHHHHHT-------SCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCC
T ss_pred HHHHHHHHHHHh-------cCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhC
Confidence 999999886532 13488999999999999999999999998 76666665543
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=99.81 E-value=3.6e-22 Score=188.28 Aligned_cols=189 Identities=13% Similarity=0.117 Sum_probs=136.6
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHHHH
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~ 204 (399)
...+|++++|+||||||||||+++|+|++++. | .+........ ......++|+||++.+|+.+ ++.|++.
T Consensus 22 ~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~~~~~~~----tv~e~l~ 95 (249)
T 2qi9_C 22 EVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-G-SIQFAGQPLEAWSATKLALHRAYLSQQQTPPFAT----PVWHYLT 95 (249)
T ss_dssp EEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-E-EEEETTEEGGGSCHHHHHHHEEEECSCCCCCTTC----BHHHHHH
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-e-EEEECCEECCcCCHHHHhceEEEECCCCccCCCC----cHHHHHH
Confidence 34589999999999999999999999999998 8 6654322211 11123489999998776655 7888887
Q ss_pred HhccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCC-------hHHHHHHHHhCCCCcHHHHHH
Q 015825 205 VHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPS-------MEELEERLRARGTETEDQILK 276 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~-------lllLDEpl~~lD~~~~e~i~~ 276 (399)
+... +....+.+.+.++. +....++-.+..+....+|+...+.+|+.+|+ +++||||++++|+.+++.+.+
T Consensus 96 ~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~ 174 (249)
T 2qi9_C 96 LHQH-DKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDK 174 (249)
T ss_dssp TTCS-STTCHHHHHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHH
T ss_pred Hhhc-cCCcHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeEEEEECCcccCCHHHHHHHHH
Confidence 6532 12224444444443 22111222223333345566777779999999 999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 277 RLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 277 ~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
.|+++.++ ..++++++||++.+...+++++.+.+|.++..+++.++..
T Consensus 175 ~l~~l~~~--------g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 175 ILSALSQQ--------GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp HHHHHHHT--------TCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred HHHHHHhC--------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99886532 2388999999999999999999999999887777665544
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.8e-22 Score=190.79 Aligned_cols=199 Identities=13% Similarity=0.117 Sum_probs=139.5
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc-cccCCeeEEecCh-HHHHHHHhhhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA-MEKDGVHYHFTER-SVMEKAIKDGKF 199 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~-~~~~~i~yvfq~~-~lf~~~~~~~~~ 199 (399)
+..+.+....+|++++|+||||||||||+++|+|+++|..| .+......... .....++|+||++ ..+..+ ++
T Consensus 22 vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G-~I~~~g~~~~~~~~~~~i~~v~q~~~~~~~~~----tv 96 (266)
T 2yz2_A 22 ALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG-DVLYDGERKKGYEIRRNIGIAFQYPEDQFFAE----RV 96 (266)
T ss_dssp EEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEECCHHHHGGGEEEECSSGGGGCCCS----SH
T ss_pred eeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCc-EEEECCEECchHHhhhhEEEEeccchhhcCCC----cH
Confidence 33334455679999999999999999999999999999888 56543322110 1124589999985 344333 78
Q ss_pred HHHHHHhcccc-C--CcHHHHHHHHHc-CCc--eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 200 LEFASVHGNLY-G--TSVEAVEAVADA-GKR--CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 200 ~E~~~~~~~~~-g--~~~~~i~~~~~~-g~~--~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
.|++.+....+ . ...+.+.+.++. +.. ...+-.+..+....+|+...+.+|+.+|++++||||++++|+.+++.
T Consensus 97 ~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~ 176 (266)
T 2yz2_A 97 FDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTD 176 (266)
T ss_dssp HHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCccccCCHHHHHH
Confidence 88887753322 1 113334444443 222 12222233333445666777789999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+.+.|+++.++ ..++|+++||++.+...+++++.+.+|.++..+++.+++..
T Consensus 177 l~~~l~~l~~~--------g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 177 LLRIVEKWKTL--------GKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHHHHHHHHT--------TCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHHHHHHHc--------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999886532 23889999999998888999999999988877766655533
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.9e-22 Score=191.06 Aligned_cols=203 Identities=13% Similarity=0.095 Sum_probs=137.8
Q ss_pred hCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc------ccccCCeeEEecChHHH
Q 015825 117 VGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR------AMEKDGVHYHFTERSVM 190 (399)
Q Consensus 117 ~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~------~~~~~~i~yvfq~~~lf 190 (399)
++...+..+.+....+|++++|+||||||||||+++|+|+++|..| .+........ ......++|+||++..+
T Consensus 31 y~~~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G-~I~~~g~~~~~~~~~~~~~~~~i~~v~Q~~~~~ 109 (279)
T 2ihy_A 31 KQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSG-TVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEK 109 (279)
T ss_dssp ETTEEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEETTBCCC---CCHHHHHTTEEEECHHHHTT
T ss_pred ECCEEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCe-EEEECCEEcccccCCHHHHcCcEEEEEcCcccc
Confidence 3334444444455669999999999999999999999999999988 6654332211 11234699999986542
Q ss_pred --HHHHhhhhhHHHHHHhcc----ccCC-cH---HHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHH
Q 015825 191 --EKAIKDGKFLEFASVHGN----LYGT-SV---EAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEEL 259 (399)
Q Consensus 191 --~~~~~~~~~~E~~~~~~~----~~g~-~~---~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllL 259 (399)
..+ ++.|++.+... .++. .. +.+.+.++. +.....+-.+..+....+|++..+.+|+.+|++++|
T Consensus 110 ~~~~l----tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lLlL 185 (279)
T 2ihy_A 110 FQEGE----RVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLIL 185 (279)
T ss_dssp SCTTS----BHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTCCSEEEE
T ss_pred cCCCC----CHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhCCCCEEEE
Confidence 122 67787766421 1221 11 122233322 111111112222333455667777899999999999
Q ss_pred HHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceE--EEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 260 EERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDH--ILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 260 DEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~--Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
|||++++|+.+++.+.+.|+++.++ + .++ ++++||++++...+++++.+.+|+++..+++.++..
T Consensus 186 DEPts~LD~~~~~~l~~~l~~l~~~-g-------~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 252 (279)
T 2ihy_A 186 DEPAAGLDFIARESLLSILDSLSDS-Y-------PTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILT 252 (279)
T ss_dssp ESTTTTCCHHHHHHHHHHHHHHHHH-C-------TTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHCS
T ss_pred eCCccccCHHHHHHHHHHHHHHHHC-C-------CEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999887543 2 278 999999999888899999999999887777665554
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.4e-21 Score=180.15 Aligned_cols=181 Identities=13% Similarity=0.133 Sum_probs=126.8
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
+..+.+....+|++++|+||||||||||+++|+|+++|..| .+........ .....++|+||++.+|+.+ ++.|
T Consensus 24 il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G-~I~~~g~~~~-~~~~~i~~v~q~~~~~~~~----tv~e 97 (214)
T 1sgw_A 24 VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKG-EIIYNGVPIT-KVKGKIFFLPEEIIVPRKI----SVED 97 (214)
T ss_dssp EEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEETTEEGG-GGGGGEEEECSSCCCCTTS----BHHH
T ss_pred EEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCe-EEEECCEEhh-hhcCcEEEEeCCCcCCCCC----CHHH
Confidence 33334455569999999999999999999999999999888 6654332211 1234589999998776655 7778
Q ss_pred HHHHhccccC--CcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHH
Q 015825 202 FASVHGNLYG--TSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRL 278 (399)
Q Consensus 202 ~~~~~~~~~g--~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L 278 (399)
++.+....++ ...+.+.+.++. +.... +-.+..+....+|+...+.+|+.+|++++||||++++|+.+++.+.+.+
T Consensus 98 nl~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllLDEPts~LD~~~~~~l~~~l 176 (214)
T 1sgw_A 98 YLKAVASLYGVKVNKNEIMDALESVEVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSI 176 (214)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHHHTTCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHH
T ss_pred HHHHHHHhcCCchHHHHHHHHHHHcCCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHH
Confidence 8776533332 223444444443 22111 2223333344566677778999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 279 RNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 279 ~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
.++.++ +. ++++++|+++++...+++++.+.
T Consensus 177 ~~~~~~-g~-------tiiivtHd~~~~~~~~d~v~~~~ 207 (214)
T 1sgw_A 177 LEILKE-KG-------IVIISSREELSYCDVNENLHKYS 207 (214)
T ss_dssp HHHHHH-HS-------EEEEEESSCCTTSSEEEEGGGGB
T ss_pred HHHHhC-CC-------EEEEEeCCHHHHHHhCCEEEEeC
Confidence 987543 22 88999999988776666655443
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=2.1e-21 Score=188.12 Aligned_cols=194 Identities=14% Similarity=0.116 Sum_probs=138.0
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhh
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
..+.++...+|++++|+||||||||||+++|+|+++|..| .+........ ...+..++|+||++.+|. ++
T Consensus 70 L~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G-~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~-----~T 143 (306)
T 3nh6_A 70 LQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSG-CIRIDGQDISQVTQASLRSHIGVVPQDTVLFN-----DT 143 (306)
T ss_dssp EEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEE-EEEETTEETTSBCHHHHHHTEEEECSSCCCCS-----EE
T ss_pred eeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCc-EEEECCEEcccCCHHHHhcceEEEecCCccCc-----cc
Confidence 3334455679999999999999999999999999999988 6654322211 112346999999987663 28
Q ss_pred hHHHHHHhccccCCcHHHHHHHHHc-CC-----------ceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhC
Q 015825 199 FLEFASVHGNLYGTSVEAVEAVADA-GK-----------RCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~i~~~~~~-g~-----------~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~l 266 (399)
+.|++.+....+ ..+.+.++++. +. ...++-....+...++|++..+.+|+.+|++++||||++++
T Consensus 144 v~eNi~~~~~~~--~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~L 221 (306)
T 3nh6_A 144 IADNIRYGRVTA--GNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSAL 221 (306)
T ss_dssp HHHHHHTTSTTC--CHHHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCC
T ss_pred HHHHHHhhcccC--CHHHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccC
Confidence 889988754322 23333333221 11 11111111112223455666777999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 267 D~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
|+.++..+++.|.++.. ..|+|+++|+++.+.. +++++.+.+|+++..+++.+++...
T Consensus 222 D~~~~~~i~~~l~~l~~---------~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~G~~~el~~~~ 279 (306)
T 3nh6_A 222 DTSNERAIQASLAKVCA---------NRTTIVVAHRLSTVVN-ADQILVIKDGCIVERGRHEALLSRG 279 (306)
T ss_dssp CHHHHHHHHHHHHHHHT---------TSEEEEECCSHHHHHT-CSEEEEEETTEEEEEECHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHcC---------CCEEEEEEcChHHHHc-CCEEEEEECCEEEEECCHHHHHhcC
Confidence 99999999998887532 2389999999998865 9999999999999999888777543
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=8.8e-22 Score=187.87 Aligned_cols=193 Identities=16% Similarity=0.077 Sum_probs=132.9
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
.++...+|++++|+||||||||||+++|+|+++|..| .+........ ......++|+||++.+|+ . ++.|
T Consensus 38 vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G-~I~~~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~----tv~e 111 (271)
T 2ixe_A 38 LTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG-KVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFG-R----SFRE 111 (271)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-S----BHHH
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCC-EEEECCEEcccCCHHHHhccEEEEecCCcccc-c----cHHH
Confidence 3445569999999999999999999999999999888 5554322211 111235899999987663 2 7888
Q ss_pred HHHHhccccCCcHHHHHHH---------HHc---CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 202 FASVHGNLYGTSVEAVEAV---------ADA---GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~---------~~~---g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
++.+....+.. ...+... ++. +....++-.+..+....+|++..+.+|+.+|++++||||++++|+.
T Consensus 112 nl~~~~~~~~~-~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~ 190 (271)
T 2ixe_A 112 NIAYGLTRTPT-MEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDAG 190 (271)
T ss_dssp HHHTTCSSCCC-HHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHH
T ss_pred HHhhhcccCCh-HHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHH
Confidence 88775432221 1111111 111 1111112122223334556677778999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
++..+.+.|.++.++ ...++|+++|+++.+.. +++++.+.+|.++..+++.++...
T Consensus 191 ~~~~i~~~l~~~~~~-------~g~tviivtHd~~~~~~-~d~v~~l~~G~i~~~g~~~~l~~~ 246 (271)
T 2ixe_A 191 NQLRVQRLLYESPEW-------ASRTVLLITQQLSLAER-AHHILFLKEGSVCEQGTHLQLMER 246 (271)
T ss_dssp HHHHHHHHHHHCTTT-------TTSEEEEECSCHHHHTT-CSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHhh-------cCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECCHHHHHhC
Confidence 999998888874321 13489999999988764 999999999999887877766543
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-21 Score=183.13 Aligned_cols=195 Identities=15% Similarity=0.166 Sum_probs=135.5
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
+..+.+....+|++++|+||||||||||+++|+|+++|..| .+........ ......++|+||++.+|+ .
T Consensus 24 vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~I~i~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~---- 97 (247)
T 2ff7_A 24 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG-QVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-R---- 97 (247)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEETTTSCHHHHHHHEEEECSSCCCTT-S----
T ss_pred eeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEEhhhCCHHHHHhcEEEEeCCCcccc-c----
Confidence 34344455669999999999999999999999999999888 5554322111 111235899999987663 3
Q ss_pred hhHHHHHHhccccCCcHHHHHHHHHc-CCceEEe-----------cchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHh
Q 015825 198 KFLEFASVHGNLYGTSVEAVEAVADA-GKRCILD-----------IDVQGARSVRASPLDAIFIFICPPSMEELEERLRA 265 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~~~~~i~~~~~~-g~~~vld-----------ld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~ 265 (399)
++.|++.+... ....+.+.+.++. +...+++ -....+....+|+...+.+|+.+|++++||||+++
T Consensus 98 tv~enl~~~~~--~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~lllLDEPts~ 175 (247)
T 2ff7_A 98 SIIDNISLANP--GMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSA 175 (247)
T ss_dssp BHHHHHTTTCT--TCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSC
T ss_pred cHHHHHhccCC--CCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 78888876421 1233333333221 1111110 00112222345566677799999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 266 RGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 266 lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
+|+.++..+.+.|+++. + ..++|+++|+++.+. .+++++.+.+|.++..+++.+++..|
T Consensus 176 LD~~~~~~i~~~l~~~~-~--------g~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~l~~~~ 234 (247)
T 2ff7_A 176 LDYESEHVIMRNMHKIC-K--------GRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQGKHKELLSEP 234 (247)
T ss_dssp CCHHHHHHHHHHHHHHH-T--------TSEEEEECSSGGGGT-TSSEEEEEETTEEEEEECHHHHHTST
T ss_pred CCHHHHHHHHHHHHHHc-C--------CCEEEEEeCCHHHHH-hCCEEEEEECCEEEEECCHHHHHhCC
Confidence 99999999999998762 1 238999999998775 49999999999998888877777664
|
| >2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.6e-18 Score=183.52 Aligned_cols=179 Identities=40% Similarity=0.632 Sum_probs=158.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEec-ChHHHHHHHhhhhhHHHHHHhccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFT-ERSVMEKAIKDGKFLEFASVHGNL 209 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq-~~~lf~~~~~~~~~~E~~~~~~~~ 209 (399)
..+++++|+||+ |+||++.|....+..++..++||||+++..|.+|..|+|. +.+.|..++..+.|+|+..+.+++
T Consensus 529 ~~~r~vvl~GP~---K~tl~~~L~~~~~~~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~~f~~~i~~~~flE~~~~~g~~ 605 (721)
T 2xkx_A 529 HYARPIIILGPT---KDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIRAHKFIEAGQYNSHL 605 (721)
T ss_pred CCCCEEEEECCC---HHHHHHHHHHhCccceeecccccccCCCCCccCCceeEEecCHHHHHHHHhcCCceEEEEECCcc
Confidence 468999999995 9999999999887677779999999999999999999999 999999999999999999999999
Q ss_pred cCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHH-HHHhc
Q 015825 210 YGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKE-EIKQG 288 (399)
Q Consensus 210 ~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~-~l~~~ 288 (399)
||++.+.+++.++.|+.+++|+++++++.++.....++++|+.+|+++.|.+ +.+|. +.+++++++.++.+ ++.+
T Consensus 606 YGt~~~~v~~~~~~g~~~ildi~~~~~~~l~~~~~~p~~ifi~pps~~~L~~-l~~R~--t~~~~~~rl~~a~~~e~~~- 681 (721)
T 2xkx_A 606 YGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLE-INKRI--TEEQARKAFDRATKLEQEF- 681 (721)
T ss_pred ceeeHHHHHHHHHCCCcEEEeCCHHHHHHHHhcccCCEEEEEeCCcHHHHHH-HhccC--CHHHHHHHHHHHHHHHHhc-
Confidence 9999999999999999999999999998888666667999999999999988 88876 45678888888743 4433
Q ss_pred cCCCcceEEEeCCCHHHHHHHHHHhhcccC
Q 015825 289 KSSGIFDHILYNDKLEECYENLKKHLGLDG 318 (399)
Q Consensus 289 ~~~~~~t~Viv~hdleea~~~l~~ii~~~~ 318 (399)
.+.||++|+|+++++|+..+..++....
T Consensus 682 --~~~fd~vi~Nd~l~~a~~~l~~~i~~~~ 709 (721)
T 2xkx_A 682 --TECFSAIVEGDSFEEIYHKVKRVIEDLS 709 (721)
T ss_pred --cccCcEEEECcCHHHHHHHHHHHHHhcc
Confidence 4578999999999999999999876543
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.77 E-value=4.3e-21 Score=180.17 Aligned_cols=188 Identities=15% Similarity=0.141 Sum_probs=130.7
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC----ccccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|++++|+||||||||||+++|+|+++|..| .+...... .....+..++|+||++.+|+ . ++.|++
T Consensus 23 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~i~~v~q~~~l~~-~----tv~enl 96 (243)
T 1mv5_A 23 FEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAG-EITIDGQPIDNISLENWRSQIGFVSQDSAIMA-G----TIRENL 96 (243)
T ss_dssp EEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBS-CEEETTEESTTTSCSCCTTTCCEECCSSCCCC-E----EHHHHT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-EEEECCEEhhhCCHHHHHhhEEEEcCCCcccc-c----cHHHHH
Confidence 44569999999999999999999999999999888 55432211 11112345899999986653 2 788887
Q ss_pred HHhccccCCcHHHHHHHHHc-CCceEE-----------ecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-GKRCIL-----------DIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g~~~vl-----------dld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+... .....+.+.+.++. +...++ +-.+..+....+|+...+.+|+.+|++++||||++++|+.++
T Consensus 97 ~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~lllLDEPts~LD~~~~ 175 (243)
T 1mv5_A 97 TYGLE-GDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESE 175 (243)
T ss_dssp TSCTT-SCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSC
T ss_pred hhhcc-CCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHH
Confidence 76411 12233444433322 111111 111112223345566677799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+.+.+.+.++. + ..++++++|+++.+. .+++++.+.+|.++..+++.++..
T Consensus 176 ~~i~~~l~~~~-~--------~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 226 (243)
T 1mv5_A 176 SMVQKALDSLM-K--------GRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGKHNELVA 226 (243)
T ss_dssp CHHHHHHHHHH-T--------TSEEEEECCSHHHHH-HCSEEEEEETTEECCCSCHHHHHH
T ss_pred HHHHHHHHHhc-C--------CCEEEEEeCChHHHH-hCCEEEEEECCEEEEeCCHHHHHh
Confidence 99999998764 1 238999999998774 599999999999887777666543
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.76 E-value=8.5e-21 Score=180.23 Aligned_cols=190 Identities=14% Similarity=0.101 Sum_probs=134.9
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc-cccCCee-EEecChHHHHHHHhhhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA-MEKDGVH-YHFTERSVMEKAIKDGKF 199 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~-~~~~~i~-yvfq~~~lf~~~~~~~~~ 199 (399)
+..+.+.... |++++|+||||||||||+++|+|++ |..| .+......... .....++ |+||++.+ .+ ++
T Consensus 20 il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G-~I~~~g~~~~~~~~~~~i~~~v~Q~~~l--~~----tv 90 (263)
T 2pjz_A 20 SLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSG-NIFINGMEVRKIRNYIRYSTNLPEAYEI--GV----TV 90 (263)
T ss_dssp EEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEE-EEEETTEEGGGCSCCTTEEECCGGGSCT--TS----BH
T ss_pred eEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCc-EEEECCEECcchHHhhheEEEeCCCCcc--CC----cH
Confidence 3333445567 9999999999999999999999999 9888 55432211100 1134689 99998754 33 78
Q ss_pred HHHHHHhccccCCcHHHHHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHH
Q 015825 200 LEFASVHGNLYGTSVEAVEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (399)
Q Consensus 200 ~E~~~~~~~~~g~~~~~i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~ 277 (399)
.|++.+....+....+.+.+.++. +.. ..++..+..+....+|+...+.+|+.+|++++||||++++|+.+++.+.+.
T Consensus 91 ~enl~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~ 170 (263)
T 2pjz_A 91 NDIVYLYEELKGLDRDLFLEMLKALKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHVISRY 170 (263)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHTTCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEECTTTTCCHHHHHHHHHH
T ss_pred HHHHHHhhhhcchHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCccccCHHHHHHHHHH
Confidence 888776543334444555555443 221 112222333334456667777899999999999999999999998888888
Q ss_pred HHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHH-HhhcccCCeeeecCCCcccc
Q 015825 278 LRNAKEEIKQGKSSGIFDHILYNDKLEECYENLK-KHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 278 L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~-~ii~~~~~~~~~~~~~~~~~ 331 (399)
|+++. . ++++++||++++...++ +++.+.+|.++..+++.++.
T Consensus 171 L~~~~----------~-tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~ 214 (263)
T 2pjz_A 171 IKEYG----------K-EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELL 214 (263)
T ss_dssp HHHSC----------S-EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHH
T ss_pred HHHhc----------C-cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHH
Confidence 87631 1 78899999999888899 99999999988877666554
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.2e-18 Score=157.58 Aligned_cols=183 Identities=39% Similarity=0.679 Sum_probs=118.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~ 210 (399)
.+|++++|+|||||||||++++|++.+.+..+..+.++++.+......+.+|+|++...|..+...+++.++..+.++.|
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYKYSISMTTRQMREGEVDGVDYFFKTRDAFEALIKDDQFIEYAEYVGNYY 83 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEECCCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhhCCCeEEecccccCCCCCCccCCCceEEcCHHHHHHHHHcCCeEEEEeECCeec
Confidence 47899999999999999999999998855555445566666544445568899999888887766667777766666678
Q ss_pred CCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccC
Q 015825 211 GTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKS 290 (399)
Q Consensus 211 g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~ 290 (399)
+.....+...+..+..+++|..+.+...++...+..+.+++.+|+.+++.+|+..|+..+.+.+.+++.....++..
T Consensus 84 g~~~~~i~~~l~~g~~vv~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~Rl~~R~~~~~~~~~~rl~~~~~~~~~--- 160 (207)
T 2j41_A 84 GTPVQYVKDTMDEGHDVFLEIEVEGAKQVRKKFPDALFIFLAPPSLEHLRERLVGRGTESDEKIQSRINEARKEVEM--- 160 (207)
T ss_dssp EEEHHHHHHHHHTTCEEEEECCGGGHHHHHHHCTTSEEEEEECCC---------------------------CGGGG---
T ss_pred CCCHHHHHHHHHcCCeEEEEECHHHHHHHHHhcCCeEEEEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc---
Confidence 88888888878888889999877766666554456678888888889999999999877777888888765433332
Q ss_pred CCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 291 SGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 291 ~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
...++++++|++++++...+.+++..
T Consensus 161 ~~~~d~vI~n~~~e~~~~~i~~~l~~ 186 (207)
T 2j41_A 161 MNLYDYVVVNDEVELAKNRIQCIVEA 186 (207)
T ss_dssp GGGCSEEEECSSHHHHHHHHHHHHHH
T ss_pred cccCCEEEECCCHHHHHHHHHHHHHH
Confidence 23568888888999999998887654
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=5.1e-21 Score=180.47 Aligned_cols=195 Identities=11% Similarity=0.102 Sum_probs=128.2
Q ss_pred EEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhc--cCCcccceeeecCCCc-----cccccCCeeEEecChHHHHHH
Q 015825 121 VVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKE--FPSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSVMEKA 193 (399)
Q Consensus 121 v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~--~~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~lf~~~ 193 (399)
.+..+.+....+|++++|+||||||||||+++|+|+ ++|..| .+....... ......+++|+||++.+|+.+
T Consensus 17 ~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G-~I~~~g~~~~~~~~~~~~~~~i~~v~q~~~~~~~~ 95 (250)
T 2d2e_A 17 TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERG-EILLDGENILELSPDERARKGLFLAFQYPVEVPGV 95 (250)
T ss_dssp EEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEE-EEEETTEECTTSCHHHHHHTTBCCCCCCCC-CCSC
T ss_pred EEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCce-EEEECCEECCCCCHHHHHhCcEEEeccCCccccCC
Confidence 333334455669999999999999999999999998 677788 555432211 111124578999998776654
Q ss_pred HhhhhhHHHHHHhcc-ccC--CcH----HHHHHHHHc-CC-ceEEecchhh-HHHHHcCCcceeEEEEcCCChHHHHHHH
Q 015825 194 IKDGKFLEFASVHGN-LYG--TSV----EAVEAVADA-GK-RCILDIDVQG-ARSVRASPLDAIFIFICPPSMEELEERL 263 (399)
Q Consensus 194 ~~~~~~~E~~~~~~~-~~g--~~~----~~i~~~~~~-g~-~~vldld~~g-~~~l~~~~~~~~~ili~~P~lllLDEpl 263 (399)
++.+++.+... .++ ... +.+.+.++. +. ..+.+-.+.. +....+|+...+.+|+.+|++++||||+
T Consensus 96 ----tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~~p~lllLDEPt 171 (250)
T 2d2e_A 96 ----TIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVLEPTYAVLDETD 171 (250)
T ss_dssp ----BHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHHCCSEEEEECGG
T ss_pred ----CHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHcCCCEEEEeCCC
Confidence 66666654321 111 111 122222222 22 1111222222 4444566677778999999999999999
Q ss_pred HhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHH-HHHhhcccCCeeeecCCCc
Q 015825 264 RARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYEN-LKKHLGLDGSIATNHQTSP 328 (399)
Q Consensus 264 ~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~-l~~ii~~~~~~~~~~~~~~ 328 (399)
+++|+.+++.+.+.|+++.+ ...++|+++||++.+... +++++.+.+|.++..+++.
T Consensus 172 s~LD~~~~~~l~~~l~~l~~--------~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 172 SGLDIDALKVVARGVNAMRG--------PNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp GTTCHHHHHHHHHHHHHHCS--------TTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred cCCCHHHHHHHHHHHHHHHh--------cCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 99999999999988887532 134889999999888766 4999999999888766544
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=99.73 E-value=1.2e-20 Score=179.54 Aligned_cols=199 Identities=13% Similarity=0.044 Sum_probs=130.2
Q ss_pred eEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhcc--CCcccceeeecCCCc-----cccccCCeeEEecChHHHHH
Q 015825 120 EVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEF--PSMFGFSVSHTTRAP-----RAMEKDGVHYHFTERSVMEK 192 (399)
Q Consensus 120 ~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~--~~~~g~~i~~ttr~~-----~~~~~~~i~yvfq~~~lf~~ 192 (399)
..+..+.+....+|++++|+||||||||||+++|+|+. +|..| .+....... ......+++|+||++.+|+.
T Consensus 33 ~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G-~I~~~g~~i~~~~~~~~~~~~i~~v~Q~~~l~~~ 111 (267)
T 2zu0_C 33 KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGG-TVEFKGKDLLALSPEDRAGEGIFMAFQYPVEIPG 111 (267)
T ss_dssp EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEE-EEEETTEEGGGSCHHHHHHHTEEEECSSCCCCTT
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCe-EEEECCEECCcCCHHHHhhCCEEEEccCcccccc
Confidence 34444444556799999999999999999999999984 56778 555432211 11112358999999876654
Q ss_pred HHhhhhhHHHHHHhc-cc---cC---CcHH----HHHHHHHc-CCc-eEEecchh-hHHHHHcCCcceeEEEEcCCChHH
Q 015825 193 AIKDGKFLEFASVHG-NL---YG---TSVE----AVEAVADA-GKR-CILDIDVQ-GARSVRASPLDAIFIFICPPSMEE 258 (399)
Q Consensus 193 ~~~~~~~~E~~~~~~-~~---~g---~~~~----~i~~~~~~-g~~-~vldld~~-g~~~l~~~~~~~~~ili~~P~lll 258 (399)
+ ++.+++.+.. .. ++ .... .+.+.++. +.. .+.+-.+. .+....+|++..+.+|+.+|++++
T Consensus 112 ~----tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iAraL~~~p~lLl 187 (267)
T 2zu0_C 112 V----SNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCI 187 (267)
T ss_dssp C----BHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHHHHHHHCCSEEE
T ss_pred c----cHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHhCCCEEE
Confidence 4 4555543321 00 11 1222 23333332 111 11111111 133345566677789999999999
Q ss_pred HHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHH-HHHhhcccCCeeeecCCCcccc
Q 015825 259 LEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYEN-LKKHLGLDGSIATNHQTSPKGI 331 (399)
Q Consensus 259 LDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~-l~~ii~~~~~~~~~~~~~~~~~ 331 (399)
||||++++|+.+++.+.+.|+++.+ ...++++++||++.+... +++++.+.+|+++..+++.++.
T Consensus 188 LDEPts~LD~~~~~~l~~~l~~l~~--------~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 253 (267)
T 2zu0_C 188 LDESDSGLDIDALKVVADGVNSLRD--------GKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVK 253 (267)
T ss_dssp EESTTTTCCHHHHHHHHHHHHTTCC--------SSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHHH
T ss_pred EeCCCCCCCHHHHHHHHHHHHHHHh--------cCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHHh
Confidence 9999999999999999888876421 245899999999887665 7999999999988877766543
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=99.72 E-value=5.3e-19 Score=185.69 Aligned_cols=191 Identities=13% Similarity=0.077 Sum_probs=137.1
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHH
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~ 202 (399)
+....+|++++|+||||||||||+++|+|+++|..| .+.....+. ....+..++|+||++.+|+ . ++.|+
T Consensus 363 ~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G-~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-~----tv~en 436 (582)
T 3b5x_A 363 SFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSG-SICLDGHDVRDYKLTNLRRHFALVSQNVHLFN-D----TIANN 436 (582)
T ss_pred eEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCC-EEEECCEEhhhCCHHHHhcCeEEEcCCCcccc-c----cHHHH
Confidence 344569999999999999999999999999999989 555432221 1112346899999987764 2 78888
Q ss_pred HHHhccccCCcHHHHHHHHHc-CCceEEec-----------chhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 203 ASVHGNLYGTSVEAVEAVADA-GKRCILDI-----------DVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 203 ~~~~~~~~g~~~~~i~~~~~~-g~~~vldl-----------d~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
+.+... .....+.+.++++. +...+++- ....+...++|+...+.+++.+|++++||||++++|+.+
T Consensus 437 i~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~ 515 (582)
T 3b5x_A 437 IAYAAE-GEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTES 515 (582)
T ss_pred HhccCC-CCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHH
Confidence 877531 12334445444432 11111110 011222335666777789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
++.+.+.++++.+ ..|+++++|+++.+. .+|+++.+.+|+++..++++++...+
T Consensus 516 ~~~i~~~l~~~~~---------~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 569 (582)
T 3b5x_A 516 ERAIQAALDELQK---------NKTVLVIAHRLSTIE-QADEILVVDEGEIIERGRHADLLAQD 569 (582)
T ss_pred HHHHHHHHHHHcC---------CCEEEEEecCHHHHH-hCCEEEEEECCEEEEECCHHHHHhCC
Confidence 9999998887531 238999999998764 69999999999999888888776554
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.7e-20 Score=175.57 Aligned_cols=186 Identities=10% Similarity=0.061 Sum_probs=129.0
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|++++|+||||||||||+++|+|++++ .| .+........ ...+..++|+||++.+|+ . ++.+++
T Consensus 41 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G-~I~i~g~~i~~~~~~~~~~~i~~v~Q~~~l~~-~----tv~enl 113 (260)
T 2ghi_A 41 FFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EG-DIKIGGKNVNKYNRNSIRSIIGIVPQDTILFN-E----TIKYNI 113 (260)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EE-EEEETTEEGGGBCHHHHHTTEEEECSSCCCCS-E----EHHHHH
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhccCCC-Ce-EEEECCEEhhhcCHHHHhccEEEEcCCCcccc-c----CHHHHH
Confidence 44569999999999999999999999999986 67 5554322211 112346899999987663 3 788888
Q ss_pred HHhccccCCcHHHHHHHHHc-CCce-----------EEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-GKRC-----------ILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g~~~-----------vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+... ....+.+.+.++. +... .++-.+..+...++|+...+.+|+.+|++++||||++++|+.++
T Consensus 114 ~~~~~--~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~ 191 (260)
T 2ghi_A 114 LYGKL--DATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTE 191 (260)
T ss_dssp HTTCT--TCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCCSEEEEECCCCTTCHHHH
T ss_pred hccCC--CCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHH
Confidence 76421 1233333333322 1111 11111112223345556667799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
..+.+.|.++.+ ..++++++|+++.+. .+++++.+.+|.++..+++.+++.
T Consensus 192 ~~i~~~l~~l~~---------~~tviivtH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 242 (260)
T 2ghi_A 192 YLFQKAVEDLRK---------NRTLIIIAHRLSTIS-SAESIILLNKGKIVEKGTHKDLLK 242 (260)
T ss_dssp HHHHHHHHHHTT---------TSEEEEECSSGGGST-TCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHhcC---------CCEEEEEcCCHHHHH-hCCEEEEEECCEEEEECCHHHHHh
Confidence 999888887531 238899999998764 599999999999988787766653
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=99.70 E-value=4.4e-20 Score=171.82 Aligned_cols=178 Identities=15% Similarity=0.079 Sum_probs=122.1
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhc
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHG 207 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~ 207 (399)
....+|++++|+||||||||||+++|+|+++|..| .+.... .++|+||++.+|+ . ++.|++.+..
T Consensus 29 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g---------~i~~v~q~~~~~~-~----tv~enl~~~~ 93 (229)
T 2pze_A 29 FKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG-KIKHSG---------RISFCSQFSWIMP-G----TIKENIIFGV 93 (229)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEECS---------CEEEECSSCCCCS-B----CHHHHHHTTS
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCcc-EEEECC---------EEEEEecCCcccC-C----CHHHHhhccC
Confidence 34468999999999999999999999999999988 554432 3899999976653 2 7788877642
Q ss_pred cccCCcHHHHHHHHHc-CCceEEec-----------chhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHH
Q 015825 208 NLYGTSVEAVEAVADA-GKRCILDI-----------DVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQIL 275 (399)
Q Consensus 208 ~~~g~~~~~i~~~~~~-g~~~vldl-----------d~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~ 275 (399)
.. ......+.++. +....++. ....+...++|+...+.+++.+|++++||||++++|+.+++.+.
T Consensus 94 ~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~lllLDEPts~LD~~~~~~i~ 170 (229)
T 2pze_A 94 SY---DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIF 170 (229)
T ss_dssp CC---CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESTTTTSCHHHHHHHH
T ss_pred Cc---ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcccCCCHHHHHHHH
Confidence 21 11112222111 11100000 00122223455566677999999999999999999998888777
Q ss_pred HHH-HHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 276 KRL-RNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 276 ~~L-~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+.+ ..+. ...++++++|+++.+. .+++++.+.+|.++..+++.++...
T Consensus 171 ~~l~~~~~---------~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~~ 219 (229)
T 2pze_A 171 ESCVCKLM---------ANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQNL 219 (229)
T ss_dssp HHCCCCCT---------TTSEEEEECCCHHHHH-HCSEEEEEETTEEEEEECHHHHHTC
T ss_pred HHHHHHhh---------CCCEEEEEcCChHHHH-hCCEEEEEECCEEEEECCHHHHHhc
Confidence 653 3211 1348899999998875 5999999999998887776665543
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.3e-20 Score=172.75 Aligned_cols=181 Identities=13% Similarity=0.087 Sum_probs=123.8
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhc
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHG 207 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~ 207 (399)
....+|++++|+||||||||||+++|+|+++|..| .+.... .++|+||++.++ .+ ++.|++.+..
T Consensus 26 l~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~I~~~g---------~i~~v~Q~~~~~-~~----tv~enl~~~~ 90 (237)
T 2cbz_A 26 FSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG-HVAIKG---------SVAYVPQQAWIQ-ND----SLRENILFGC 90 (237)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEE-EEEECS---------CEEEECSSCCCC-SE----EHHHHHHTTS
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc-eEEECC---------EEEEEcCCCcCC-Cc----CHHHHhhCcc
Confidence 44569999999999999999999999999999888 555432 389999987432 33 7888887754
Q ss_pred cccCCcHHHHHHHHHcCCc-----------eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHH
Q 015825 208 NLYGTSVEAVEAVADAGKR-----------CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILK 276 (399)
Q Consensus 208 ~~~g~~~~~i~~~~~~g~~-----------~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~ 276 (399)
.........+.+.. +.. ..++-.+..+....+|+...+.+|+.+|++++||||++++|+.++..+.+
T Consensus 91 ~~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~ 168 (237)
T 2cbz_A 91 QLEEPYYRSVIQAC--ALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFE 168 (237)
T ss_dssp CCCTTHHHHHHHHT--TCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEESTTTTSCHHHHHHHHH
T ss_pred ccCHHHHHHHHHHH--hhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHH
Confidence 32221111111111 110 01111112223334556667779999999999999999999988888887
Q ss_pred HHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 277 RLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 277 ~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
.+.... ++ ....++++++|+++.+. .+++++.+.+|.++..+++.++..
T Consensus 169 ~l~~~~-~~-----~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g~~~~~~~ 217 (237)
T 2cbz_A 169 NVIGPK-GM-----LKNKTRILVTHSMSYLP-QVDVIIVMSGGKISEMGSYQELLA 217 (237)
T ss_dssp HTTSTT-ST-----TTTSEEEEECSCSTTGG-GSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHH-hh-----cCCCEEEEEecChHHHH-hCCEEEEEeCCEEEEeCCHHHHhh
Confidence 774210 01 11348999999988764 689999999999888777666553
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.69 E-value=8.2e-17 Score=155.59 Aligned_cols=156 Identities=19% Similarity=0.231 Sum_probs=117.6
Q ss_pred CCCCceeccEEEEEe-cCCeeEEEEeeeCCCceEEcccccCCC------CCCCCCCCccCccccchhhhhccCCCceEEE
Q 015825 29 CETTTVIGDKTYVIA-GSDESIGVKIYDRSTGNWLIPAVRGIE------PRPCKGHSAVLLNEDRILVIKKGSSSDDCLW 101 (399)
Q Consensus 29 ~~~~~~vGD~v~~~~-~~~~~~i~~i~~r~~~~l~rp~~an~~------~~~~p~~~~~~l~~dr~L~~~~~~~~~~~i~ 101 (399)
....|.|||++.+.. .++...|.++.+| .+.++|+..+|+| .+.+|.+++..+ ++++..++..+++++|+
T Consensus 45 ~~~~pTiGd~~~~~~~~~~~~~iwD~qer-~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l--~~~l~~~~~~~~piilv 121 (301)
T 1u0l_A 45 QNLKIYVGDRVEYTPDETGSGVIENVLHR-KNLLTKPHVANVDQVILVVTVKMPETSTYII--DKFLVLAEKNELETVMV 121 (301)
T ss_dssp TTCCCCTTCEEEEECCCSSSEEEEEECCC-SCEETTTTEESCCEEEEEECSSTTCCCHHHH--HHHHHHHHHTTCEEEEE
T ss_pred cCCCCCCccEEEEEEcCCCeEEEEEEccc-cceeeccccccCCEEEEEEeCCCCCCCHHHH--HHHHHHHHHCCCCEEEE
Confidence 356799999998875 3346789999999 8999999999988 555677777788 89988777789999999
Q ss_pred EeCCCh--H-H---HHHHHHHhC--CeEEEeccC-cc-------CCCCcEEEEEcCCCCCHHHHHhhhhhccCCccccee
Q 015825 102 FLEVDT--P-Y---VREQKKVVG--AEVVAWSKG-VI-------GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSV 165 (399)
Q Consensus 102 ~~k~D~--~-~---~~~l~~~~g--~~v~~~s~~-~~-------~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i 165 (399)
.||+|. + . .+.+.+.++ ++++.+|+. .. ...|++++|+||||||||||+|+|+|+..+..| .+
T Consensus 122 ~NK~DL~~~~~v~~~~~~~~~~~~~~~~~~~SAktg~gv~~lf~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G-~i 200 (301)
T 1u0l_A 122 INKMDLYDEDDLRKVRELEEIYSGLYPIVKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVS-EV 200 (301)
T ss_dssp ECCGGGCCHHHHHHHHHHHHHHTTTSCEEECCTTTCTTHHHHHHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred EeHHHcCCchhHHHHHHHHHHHhhhCcEEEEECCCCcCHHHHHHHhcCCeEEEECCCCCcHHHHHHHhccccccccc-ce
Confidence 999994 1 2 334445566 889998876 22 248999999999999999999999999999888 44
Q ss_pred e-------ecCCCccccccCCeeEEecChH
Q 015825 166 S-------HTTRAPRAMEKDGVHYHFTERS 188 (399)
Q Consensus 166 ~-------~ttr~~~~~~~~~i~yvfq~~~ 188 (399)
. ++|+.........++|+||++.
T Consensus 201 ~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~ 230 (301)
T 1u0l_A 201 SEKLQRGRHTTTTAQLLKFDFGGYVVDTPG 230 (301)
T ss_dssp ---------CCCSCCEEECTTSCEEESSCS
T ss_pred ecccCCCCCceeeeEEEEcCCCCEEEECcC
Confidence 4 2444433332345789999875
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.3e-19 Score=185.87 Aligned_cols=188 Identities=15% Similarity=0.120 Sum_probs=135.9
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc----cccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA----MEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~----~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|++++|+||||||||||+++|+|+++|..| .+.....+... ..+..++|+||++.+|. +++.||+
T Consensus 364 l~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G-~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-----~tv~eni 437 (587)
T 3qf4_A 364 FSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERG-RVEVDELDVRTVKLKDLRGHISAVPQETVLFS-----GTIKENL 437 (587)
T ss_dssp EEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEE-EEEESSSBGGGBCHHHHHHHEEEECSSCCCCS-----EEHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCc-EEEECCEEcccCCHHHHHhheEEECCCCcCcC-----ccHHHHH
Confidence 34568999999999999999999999999999989 66544333221 11345899999987663 3788888
Q ss_pred HHhccccCCcHHHHHHHHHc------------CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA------------GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~------------g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+.... ...+.+.+.++. |....++-....+...++|+...+.+++.+|++++||||++++|+.++
T Consensus 438 ~~~~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~ 515 (587)
T 3qf4_A 438 KWGRED--ATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITE 515 (587)
T ss_dssp TTTCSS--CCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHH
T ss_pred hccCCC--CCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 765432 223333333221 111122211112233455666777799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
+.+++.++++. ...|+++++|+++.+. .+|+++.+++|+++..+++.++...
T Consensus 516 ~~i~~~l~~~~---------~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~g~~~el~~~ 567 (587)
T 3qf4_A 516 KRILDGLKRYT---------KGCTTFIITQKIPTAL-LADKILVLHEGKVAGFGTHKELLEH 567 (587)
T ss_dssp HHHHHHHHHHS---------TTCEEEEEESCHHHHT-TSSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHhC---------CCCEEEEEecChHHHH-hCCEEEEEECCEEEEECCHHHHHhC
Confidence 99998887642 1348999999998764 7999999999999999998877654
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=99.67 E-value=5.5e-19 Score=185.43 Aligned_cols=189 Identities=15% Similarity=0.110 Sum_probs=135.0
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|++++|+||||||||||+++|+|+++|..| .+.....+.. ...+..++|+||++.+|+ +++.||+
T Consensus 362 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G-~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-----~tv~eni 435 (578)
T 4a82_A 362 LSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSG-QILIDGHNIKDFLTGSLRNQIGLVQQDNILFS-----DTVKENI 435 (578)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEE-EEEETTEEGGGSCHHHHHHTEEEECSSCCCCS-----SBHHHHH
T ss_pred EEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCc-EEEECCEEhhhCCHHHHhhheEEEeCCCccCc-----ccHHHHH
Confidence 34568999999999999999999999999999988 6654332221 112346999999987663 2788988
Q ss_pred HHhccccCCcHHHHHHHHHc-CCceEEecch-----------hhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-GKRCILDIDV-----------QGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g~~~vldld~-----------~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+.... ...+.+.+.++. +....++--| ..+...++|+...+.+++.+|++++||||++++|+.++
T Consensus 436 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~ 513 (578)
T 4a82_A 436 LLGRPT--ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESE 513 (578)
T ss_dssp GGGCSS--CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHH
T ss_pred hcCCCC--CCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHH
Confidence 775321 233444443322 1111111001 11223355666777799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
..+++.++++.+ ..|+++++|+++.+. .+|+++.+.+|+++..++++++...+
T Consensus 514 ~~i~~~l~~~~~---------~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~~g~~~el~~~~ 566 (578)
T 4a82_A 514 SIIQEALDVLSK---------DRTTLIVAHRLSTIT-HADKIVVIENGHIVETGTHRELIAKQ 566 (578)
T ss_dssp HHHHHHHHHHTT---------TSEEEEECSSGGGTT-TCSEEEEEETTEEEEEECHHHHHHTT
T ss_pred HHHHHHHHHHcC---------CCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHHhCC
Confidence 999888876431 248899999998764 59999999999999999988777554
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=99.67 E-value=5.8e-19 Score=185.43 Aligned_cols=190 Identities=15% Similarity=0.106 Sum_probs=135.6
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHH
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEF 202 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~ 202 (399)
+....+|++++|+||||||||||+++|+|+++|..| .+.....+.. ...+..++|+||++.+|+ +++.|+
T Consensus 363 ~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G-~i~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~-----~tv~en 436 (582)
T 3b60_A 363 NLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG-HILMDGHDLREYTLASLRNQVALVSQNVHLFN-----DTVANN 436 (582)
T ss_dssp EEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEE-EEEETTEETTTBCHHHHHHTEEEECSSCCCCS-----SBHHHH
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCC-eEEECCEEccccCHHHHHhhCeEEccCCcCCC-----CCHHHH
Confidence 344569999999999999999999999999999988 6654332211 112346899999987664 288899
Q ss_pred HHHhccccCCcHHHHHHHHHcC-CceEEecch-----------hhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 203 ASVHGNLYGTSVEAVEAVADAG-KRCILDIDV-----------QGARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 203 ~~~~~~~~g~~~~~i~~~~~~g-~~~vldld~-----------~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
+.+... .....+.+.++++.. ...+++--| ..+...++|+...+.+++.+|++++||||++++|+.+
T Consensus 437 i~~~~~-~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~ 515 (582)
T 3b60_A 437 IAYART-EEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTES 515 (582)
T ss_dssp HHTTTT-SCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHH
T ss_pred HhccCC-CCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHH
Confidence 887531 123455555554431 111111001 1122234556667779999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCC
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDL 333 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~ 333 (399)
++.+++.++++.+ ..|+++++|+++.+. .+++++.+.+|+++..+++.++...
T Consensus 516 ~~~i~~~l~~~~~---------~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~ 568 (582)
T 3b60_A 516 ERAIQAALDELQK---------NRTSLVIAHRLSTIE-QADEIVVVEDGIIVERGTHSELLAQ 568 (582)
T ss_dssp HHHHHHHHHHHHT---------TSEEEEECSCGGGTT-TCSEEEEEETTEEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHhC---------CCEEEEEeccHHHHH-hCCEEEEEECCEEEEecCHHHHHHc
Confidence 9999998887532 238999999998764 6999999999999988887776543
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.6e-18 Score=179.56 Aligned_cols=182 Identities=14% Similarity=0.052 Sum_probs=123.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~ 210 (399)
.+|++++|+||||||||||+++|+|+++|..|..+ ...+++|++|+...+.. .++.++........
T Consensus 376 ~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~~----------~~~~i~~~~q~~~~~~~----~tv~e~~~~~~~~~ 441 (608)
T 3j16_B 376 SDSEILVMMGENGTGKTTLIKLLAGALKPDEGQDI----------PKLNVSMKPQKIAPKFP----GTVRQLFFKKIRGQ 441 (608)
T ss_dssp CTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCCC----------CSCCEEEECSSCCCCCC----SBHHHHHHHHCSST
T ss_pred ccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcCc----------cCCcEEEecccccccCC----ccHHHHHHHHhhcc
Confidence 35689999999999999999999999999888421 01247899987432211 13444432211111
Q ss_pred CCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhcc
Q 015825 211 GTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGK 289 (399)
Q Consensus 211 g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~ 289 (399)
......+.+.++. +.....+-.+..+....+|++..+.+|+.+|++++||||++++|+.++..+.+.|+++..+.
T Consensus 442 ~~~~~~~~~~l~~l~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~---- 517 (608)
T 3j16_B 442 FLNPQFQTDVVKPLRIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHN---- 517 (608)
T ss_dssp TTSHHHHHHTHHHHTSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHH----
T ss_pred cccHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhC----
Confidence 1122222222221 11111111222233334556666778999999999999999999999999999999876443
Q ss_pred CCCcceEEEeCCCHHHHHHHHHHhhcccC--CeeeecCCCccccCC
Q 015825 290 SSGIFDHILYNDKLEECYENLKKHLGLDG--SIATNHQTSPKGIDL 333 (399)
Q Consensus 290 ~~~~~t~Viv~hdleea~~~l~~ii~~~~--~~~~~~~~~~~~~~~ 333 (399)
..++++++||++++...+++++.+.+ |.+...++|.++++.
T Consensus 518 ---g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 518 ---KKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp ---TCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred ---CCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 23899999999999999999999875 677888888877754
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.65 E-value=8.5e-19 Score=184.69 Aligned_cols=189 Identities=15% Similarity=0.133 Sum_probs=134.5
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|++++|+||||||||||+++|+|+++|..| .+.....+.. ...+..++|+||++.+|+ +++.||+
T Consensus 376 l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G-~i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-----~tv~eni 449 (598)
T 3qf4_B 376 FHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRG-QILVDGIDIRKIKRSSLRSSIGIVLQDTILFS-----TTVKENL 449 (598)
T ss_dssp EECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEE-EEEETTEEGGGSCHHHHHHHEEEECTTCCCCS-----SBHHHHH
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCe-EEEECCEEhhhCCHHHHHhceEEEeCCCcccc-----ccHHHHH
Confidence 34568999999999999999999999999999988 6654332221 112335899999987663 3888988
Q ss_pred HHhccccCCcHHHHHHHHHcC-CceEEecchh-----------hHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADAG-KRCILDIDVQ-----------GARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~g-~~~vldld~~-----------g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+.... ...+.+.++++.. ....++--|. .+...++|+...+.+++.+|++++||||++++|+.++
T Consensus 450 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~ 527 (598)
T 3qf4_B 450 KYGNPG--ATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTE 527 (598)
T ss_dssp HSSSTT--CCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHH
T ss_pred hcCCCC--CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHH
Confidence 775321 2223333332211 1111110111 1122346667777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
..+++.+.++.+ ..|+++++|+++.+. .+|+++.+.+|+++..+++.++....
T Consensus 528 ~~i~~~l~~~~~---------~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~~g~~~~l~~~~ 580 (598)
T 3qf4_B 528 KSIQAAMWKLME---------GKTSIIIAHRLNTIK-NADLIIVLRDGEIVEMGKHDELIQKR 580 (598)
T ss_dssp HHHHHHHHHHHT---------TSEEEEESCCTTHHH-HCSEEEEECSSSEEECSCHHHHHHTT
T ss_pred HHHHHHHHHHcC---------CCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHHhCC
Confidence 999998887531 348999999998764 59999999999999999988777543
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.6e-18 Score=178.66 Aligned_cols=180 Identities=13% Similarity=0.068 Sum_probs=122.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHh-ccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVH-GNL 209 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~-~~~ 209 (399)
.+|++++|+||||||||||+++|+|+++|..| .+.. ...++|+||+...++.+ ++.+++... ...
T Consensus 310 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G-~i~~---------~~~i~~v~Q~~~~~~~~----tv~~~~~~~~~~~ 375 (538)
T 1yqt_A 310 KKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG-KIEW---------DLTVAYKPQYIKADYEG----TVYELLSKIDASK 375 (538)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBC-CCCC---------CCCEEEECSSCCCCCSS----BHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEE---------CceEEEEecCCcCCCCC----cHHHHHHhhhccC
Confidence 48999999999999999999999999999888 4432 12489999986543222 444444322 111
Q ss_pred cCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhc
Q 015825 210 YGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQG 288 (399)
Q Consensus 210 ~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~ 288 (399)
+. ....+.+.++. +.....+-.+..+....+|++..+.+++.+|++++||||++++|+.+++.+.+.|+++.++.
T Consensus 376 ~~-~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~--- 451 (538)
T 1yqt_A 376 LN-SNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN--- 451 (538)
T ss_dssp HT-CHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHH---
T ss_pred CC-HHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhC---
Confidence 11 12222222221 11001111122222334556666778999999999999999999999999999999875432
Q ss_pred cCCCcceEEEeCCCHHHHHHHHHHhhcccC--CeeeecCCCccccC
Q 015825 289 KSSGIFDHILYNDKLEECYENLKKHLGLDG--SIATNHQTSPKGID 332 (399)
Q Consensus 289 ~~~~~~t~Viv~hdleea~~~l~~ii~~~~--~~~~~~~~~~~~~~ 332 (399)
..++++++||++++...+++++.+.+ +.+...++|.++..
T Consensus 452 ----g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 452 ----EKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp ----TCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred ----CCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 23889999999999999999998874 45555677766553
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.64 E-value=3.2e-18 Score=180.19 Aligned_cols=180 Identities=14% Similarity=0.074 Sum_probs=122.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHh-ccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVH-GNL 209 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~-~~~ 209 (399)
.+|++++|+||||||||||+++|+|+++|..| .+.. ...++|+||+...+..+ ++.+++... ...
T Consensus 380 ~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G-~I~~---------~~~i~~v~Q~~~~~~~~----tv~e~~~~~~~~~ 445 (607)
T 3bk7_A 380 RKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEG-KVEW---------DLTVAYKPQYIKAEYEG----TVYELLSKIDSSK 445 (607)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHTSSCCSBS-CCCC---------CCCEEEECSSCCCCCSS----BHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCCCCCce-EEEE---------eeEEEEEecCccCCCCC----cHHHHHHhhhccC
Confidence 47999999999999999999999999999888 4432 12489999986543222 454544332 000
Q ss_pred cCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhc
Q 015825 210 YGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQG 288 (399)
Q Consensus 210 ~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~ 288 (399)
+. ....+.+.++. +.....+-.+..+....+|++..+.+|+.+|++++||||++++|+.++..+.+.|+++.++.
T Consensus 446 ~~-~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~--- 521 (607)
T 3bk7_A 446 LN-SNFYKTELLKPLGIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN--- 521 (607)
T ss_dssp HH-CHHHHHHTHHHHTCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHT---
T ss_pred CC-HHHHHHHHHHHcCCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC---
Confidence 11 11222222222 11111111222333344566667779999999999999999999999999999999875432
Q ss_pred cCCCcceEEEeCCCHHHHHHHHHHhhcccC--CeeeecCCCccccC
Q 015825 289 KSSGIFDHILYNDKLEECYENLKKHLGLDG--SIATNHQTSPKGID 332 (399)
Q Consensus 289 ~~~~~~t~Viv~hdleea~~~l~~ii~~~~--~~~~~~~~~~~~~~ 332 (399)
..++++++||++++...+++++.+.+ +.....++|.++..
T Consensus 522 ----g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 522 ----EKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp ----TCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred ----CCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 23889999999999999999988874 55555677766553
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=99.64 E-value=5.5e-19 Score=170.01 Aligned_cols=179 Identities=15% Similarity=0.086 Sum_probs=120.8
Q ss_pred ccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHH
Q 015825 125 SKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 125 s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~ 204 (399)
+.+....+|++++|+||||||||||+++|+|+++|..| .+.... .++|+||++.+|+ . ++.|++.
T Consensus 56 ~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G-~I~~~g---------~i~~v~Q~~~l~~-~----tv~enl~ 120 (290)
T 2bbs_A 56 DINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG-KIKHSG---------RISFCSQNSWIMP-G----TIKENII 120 (290)
T ss_dssp EEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEE-EEECCS---------CEEEECSSCCCCS-S----BHHHHHH
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCc-EEEECC---------EEEEEeCCCccCc-c----cHHHHhh
Confidence 33445569999999999999999999999999999888 554422 3899999976654 2 6777765
Q ss_pred HhccccCCcHHHHHHHHHc-CCceEEec-----------chhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 205 VHGNLYGTSVEAVEAVADA-GKRCILDI-----------DVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~~~~~-g~~~vldl-----------d~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
.. .+ ........++. +....++. ....+....+|+...+.+|+.+|++++||||++++|+.++.
T Consensus 121 -~~-~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~ 196 (290)
T 2bbs_A 121 -GV-SY--DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEK 196 (290)
T ss_dssp -TT-CC--CHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHH
T ss_pred -Cc-cc--chHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHH
Confidence 21 11 11112211111 11000000 00112223345566677999999999999999999998888
Q ss_pred HHHHHH-HHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 273 QILKRL-RNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 273 ~i~~~L-~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
.+.+.+ ..+. ...++++++|+++.+. .+++++.+.+|.++..+++.++..
T Consensus 197 ~i~~~ll~~~~---------~~~tviivtHd~~~~~-~~d~i~~l~~G~i~~~g~~~~l~~ 247 (290)
T 2bbs_A 197 EIFESCVCKLM---------ANKTRILVTSKMEHLK-KADKILILHEGSSYFYGTFSELQN 247 (290)
T ss_dssp HHHHHCCCCCT---------TTSEEEEECCCHHHHH-HSSEEEEEETTEEEEEECHHHHHH
T ss_pred HHHHHHHHHhh---------CCCEEEEEecCHHHHH-cCCEEEEEECCeEEEeCCHHHHhh
Confidence 777643 2211 1348999999998774 599999999999988787766643
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.5e-17 Score=172.86 Aligned_cols=169 Identities=17% Similarity=0.136 Sum_probs=116.5
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccc
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNL 209 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~ 209 (399)
..+|++++|+||||||||||+++|+|+++|..| .+... ...++|++|....... .++.+++.+....
T Consensus 291 i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G-~i~~~--------~~~i~~~~q~~~~~~~----~tv~~~l~~~~~~ 357 (538)
T 3ozx_A 291 AKEGEIIGILGPNGIGKTTFARILVGEITADEG-SVTPE--------KQILSYKPQRIFPNYD----GTVQQYLENASKD 357 (538)
T ss_dssp EETTCEEEEECCTTSSHHHHHHHHTTSSCCSBC-CEESS--------CCCEEEECSSCCCCCS----SBHHHHHHHHCSS
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCc-EEEEC--------CeeeEeechhcccccC----CCHHHHHHHhhhh
Confidence 458999999999999999999999999999999 55421 1247898887432211 2555655443211
Q ss_pred c-CCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHh
Q 015825 210 Y-GTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQ 287 (399)
Q Consensus 210 ~-g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~ 287 (399)
+ ......+.+.++. +.....+-.+..+....+|++..+.+++.+|++++||||++++|+.++..+.+.|+++.++.
T Consensus 358 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~-- 435 (538)
T 3ozx_A 358 ALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRER-- 435 (538)
T ss_dssp TTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHT--
T ss_pred ccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhC--
Confidence 1 1111222222211 11111112233333345666777779999999999999999999999999999999876542
Q ss_pred ccCCCcceEEEeCCCHHHHHHHHHHhhcccC
Q 015825 288 GKSSGIFDHILYNDKLEECYENLKKHLGLDG 318 (399)
Q Consensus 288 ~~~~~~~t~Viv~hdleea~~~l~~ii~~~~ 318 (399)
..++++++||++++...+++++.+.+
T Consensus 436 -----g~tvi~vsHdl~~~~~~aDri~vl~~ 461 (538)
T 3ozx_A 436 -----KAVTFIIDHDLSIHDYIADRIIVFKG 461 (538)
T ss_dssp -----TCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred -----CCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 34889999999999999999998875
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.58 E-value=8e-18 Score=191.28 Aligned_cols=191 Identities=14% Similarity=0.114 Sum_probs=139.8
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHHH
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~ 204 (399)
...+|+.++|+||||||||||+++|.+++.|..| .|.....+. ....+..++|++|++.+|. +++.+|+.
T Consensus 1101 ~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G-~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~-----gTIreNI~ 1174 (1321)
T 4f4c_A 1101 SVEPGQTLALVGPSGCGKSTVVALLERFYDTLGG-EIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD-----CSIAENII 1174 (1321)
T ss_dssp EECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSS-EEEETTEETTTBCHHHHHTTEEEECSSCCCCS-----EEHHHHHS
T ss_pred EECCCCEEEEECCCCChHHHHHHHHhcCccCCCC-EEEECCEEhhhCCHHHHHhheEEECCCCEeeC-----ccHHHHHh
Confidence 3469999999999999999999999999999999 665433222 1223456999999998774 48899987
Q ss_pred HhccccCCcHHHHHHHHHcC------------CceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 205 VHGNLYGTSVEAVEAVADAG------------KRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~~~~~g------------~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
|...-...+.+++.++++.. ....+.-.-..+...++|+...+.+++.+|++++|||+|+++|++++.
T Consensus 1175 ~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~ 1254 (1321)
T 4f4c_A 1175 YGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEK 1254 (1321)
T ss_dssp SSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHH
T ss_pred ccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHH
Confidence 75322234556666555431 111111000012223456667777999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
.+++.|+++ ...+|+++++|.+.. +..+|+++++++|+++..|++.+++..++
T Consensus 1255 ~Iq~~l~~~---------~~~~TvI~IAHRLsT-i~~aD~I~Vld~G~IvE~Gth~eLl~~~g 1307 (1321)
T 4f4c_A 1255 VVQEALDRA---------REGRTCIVIAHRLNT-VMNADCIAVVSNGTIIEKGTHTQLMSEKG 1307 (1321)
T ss_dssp HHHHHHTTT---------SSSSEEEEECSSSST-TTTCSEEEEESSSSEEEEECHHHHHHCC-
T ss_pred HHHHHHHHH---------cCCCEEEEeccCHHH-HHhCCEEEEEECCEEEEECCHHHHHhCCc
Confidence 999888763 235699999998754 45799999999999999999999887653
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.3e-17 Score=187.09 Aligned_cols=190 Identities=17% Similarity=0.162 Sum_probs=136.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
..+|++++|+||||||||||+++|.|+++|..| .+.....+.. ...+..++|+||++.+|. +++.||+.+
T Consensus 1056 i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-----~ti~eNi~~ 1129 (1284)
T 3g5u_A 1056 VKKGQTLALVGSSGCGKSTVVQLLERFYDPMAG-SVFLDGKEIKQLNVQWLRAQLGIVSQEPILFD-----CSIAENIAY 1129 (1284)
T ss_dssp ECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEE-EEESSSSCTTSSCHHHHTTSCEEEESSCCCCS-----SBHHHHHTC
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC-EEEECCEEcccCCHHHHHhceEEECCCCcccc-----ccHHHHHhc
Confidence 358999999999999999999999999999988 6654332221 122356999999986553 388899877
Q ss_pred hccccCCcHHHHHHHHHc-CCceEEecchh-----------hHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 206 HGNLYGTSVEAVEAVADA-GKRCILDIDVQ-----------GARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 206 ~~~~~g~~~~~i~~~~~~-g~~~vldld~~-----------g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
.........+.+.+.++. +...+++--+. .+...++|+...+.+++.+|++++||||++++|+.+++.
T Consensus 1130 ~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~ 1209 (1284)
T 3g5u_A 1130 GDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKV 1209 (1284)
T ss_dssp CCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHH
T ss_pred cCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHH
Confidence 543333344444443332 11111110111 122234566667779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
+++.++++. ..+|+++++|+++.+ ..+|+++.+.+|+++..+++.++....+
T Consensus 1210 i~~~l~~~~---------~~~tvi~isH~l~~i-~~~dri~vl~~G~i~~~g~~~~l~~~~g 1261 (1284)
T 3g5u_A 1210 VQEALDKAR---------EGRTCIVIAHRLSTI-QNADLIVVIQNGKVKEHGTHQQLLAQKG 1261 (1284)
T ss_dssp HHHHHHHHS---------SSSCEEEECSCTTGG-GSCSEEEEEETBEEEEEECHHHHHHSCS
T ss_pred HHHHHHHhC---------CCCEEEEEecCHHHH-HcCCEEEEEECCEEEEECCHHHHHhCCC
Confidence 998887531 245899999999886 4599999999999999999888776543
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=6.4e-17 Score=183.49 Aligned_cols=189 Identities=15% Similarity=0.157 Sum_probs=134.5
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc----ccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR----AMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~----~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|++++|+||||||||||+++|.|+++|..| .+.....+.. ...+..++|++|++.+|. +++.||+
T Consensus 411 l~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G-~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~-----~ti~eNi 484 (1284)
T 3g5u_A 411 LKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDG-MVSIDGQDIRTINVRYLREIIGVVSQEPVLFA-----TTIAENI 484 (1284)
T ss_dssp EEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEE-EEEETTEEGGGSCHHHHHHHEEEECSSCCCCS-----SCHHHHH
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCe-EEEECCEEHHhCCHHHHHhheEEEcCCCccCC-----ccHHHHH
Confidence 44569999999999999999999999999999888 6654332211 111235899999987663 3888998
Q ss_pred HHhccccCCcHHHHHHHHHcC-CceEEecchh-----------hHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADAG-KRCILDIDVQ-----------GARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~g-~~~vldld~~-----------g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+.... ...+.+.++++.. ....+.--+. .+...++|+...+.+++.+|++++||||++++|+.++
T Consensus 485 ~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~ 562 (1284)
T 3g5u_A 485 RYGRED--VTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESE 562 (1284)
T ss_dssp HHHCSS--CCHHHHHHHHHHTTCHHHHHHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHH
T ss_pred hcCCCC--CCHHHHHHHHHHhCcHHHHHhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHH
Confidence 876432 2344444433321 1110000011 1222345666677799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
..+++.++.+. ...|+++++|+++.+. .+|+++.+.+|+++..+++.++...+
T Consensus 563 ~~i~~~l~~~~---------~~~t~i~itH~l~~i~-~~d~i~vl~~G~i~~~g~~~~l~~~~ 615 (1284)
T 3g5u_A 563 AVVQAALDKAR---------EGRTTIVIAHRLSTVR-NADVIAGFDGGVIVEQGNHDELMREK 615 (1284)
T ss_dssp HHHHHHHHHHH---------TTSEEEEECSCHHHHT-TCSEEEECSSSCCCCEECHHHHHHTT
T ss_pred HHHHHHHHHHc---------CCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECCHHHHHhCC
Confidence 88888887642 1348999999998875 49999999999999989888776554
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.1e-16 Score=181.96 Aligned_cols=189 Identities=16% Similarity=0.169 Sum_probs=138.2
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc----cccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA----MEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~----~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
....+|+.++|+||||||||||++.|.|+++|..| .+.....+.+. ..+..++|++|++.+|. +++.||+
T Consensus 439 l~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G-~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~-----~TI~eNI 512 (1321)
T 4f4c_A 439 LRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKG-KITIDGVDVRDINLEFLRKNVAVVSQEPALFN-----CTIEENI 512 (1321)
T ss_dssp EEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEE-EEEETTEETTTSCHHHHHHHEEEECSSCCCCS-----EEHHHHH
T ss_pred EeecCCcEEEEEecCCCcHHHHHHHhccccccccC-cccCCCccchhccHHHHhhcccccCCcceeeC-----CchhHHH
Confidence 34569999999999999999999999999999999 66543322221 12235899999987664 4889999
Q ss_pred HHhccccCCcHHHHHHHHHc------------CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA------------GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~------------g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.|.... .+.+++.++++. |....+.-.-..+...++|+...+.+++.+|++++|||||+++|..++
T Consensus 513 ~~g~~~--~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te 590 (1321)
T 4f4c_A 513 SLGKEG--ITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESE 590 (1321)
T ss_dssp HTTCTT--CCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTH
T ss_pred hhhccc--chHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHH
Confidence 876432 244555554432 111111100001122356667777799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
..+++.|..+.+ ..|+|+++|.+. ++..+|+++++++|+++..|+..++....
T Consensus 591 ~~i~~~l~~~~~---------~~T~iiiaHrls-~i~~aD~Iivl~~G~ive~Gth~eL~~~~ 643 (1321)
T 4f4c_A 591 GIVQQALDKAAK---------GRTTIIIAHRLS-TIRNADLIISCKNGQVVEVGDHRALMAQQ 643 (1321)
T ss_dssp HHHHHHHHHHHT---------TSEEEEECSCTT-TTTTCSEEEEEETTEEEEEECHHHHHTTT
T ss_pred HHHHHHHHHHhC---------CCEEEEEcccHH-HHHhCCEEEEeeCCeeeccCCHHHHHHhh
Confidence 999999987532 338999999886 55689999999999999999998887654
|
| >3tsz_A Tight junction protein ZO-1; PDZ3-SH3-GUK, scaffolding, JAM, tight junction, cell adhesio; 2.50A {Homo sapiens} PDB: 3tsw_A 3lh5_A | Back alignment and structure |
|---|
Probab=99.52 E-value=5.3e-14 Score=140.60 Aligned_cols=150 Identities=17% Similarity=0.285 Sum_probs=120.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~ 210 (399)
..+++++|+|||| +||.+.|....+..++ .+||+++..+.+|..|+|.
T Consensus 230 ~~~r~iVlsGPsg---~tl~~~L~~~~p~~~~----~~tr~pR~gE~dG~~Y~Fv------------------------- 277 (391)
T 3tsz_A 230 GFLRPVTIFGPIA---DVAREKLAREEPDIYQ----IAKSEPRDAGTDQRSSGII------------------------- 277 (391)
T ss_dssp SSCCCEEEESTTH---HHHHHHHHHHCTTTEE----ECCCCCCCSSSCCC--CCC-------------------------
T ss_pred CCCCEEEEECCCH---HHHHHHHHhhCccccc----cccCCCCCcccCCccCCcC-------------------------
Confidence 4789999999998 8999999988776555 2688899999999999875
Q ss_pred CCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHH-HHHhcc
Q 015825 211 GTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKE-EIKQGK 289 (399)
Q Consensus 211 g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~-~l~~~~ 289 (399)
+.+.+++.++.|+.|+||+++++++.++...+.++++|+.+|+++.|.++...+..++++.+++++..+.+ ++..
T Consensus 278 --~~~~V~~~~~~Gk~~iLdId~qg~~~l~~~~~~p~~IFI~PPS~~~L~~~~~r~~~~s~e~~~~~~~~a~~~e~~~-- 353 (391)
T 3tsz_A 278 --RLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNN-- 353 (391)
T ss_dssp --CHHHHHHHHTTTCEEEECCCHHHHHHHHHTTCCCEEEEEECCCHHHHHHHHHHHCSSCCCCHHHHHHHHHHHHHHH--
T ss_pred --cHHHHHHHHHcCCEEEEEeCHHHHHHHHhCCCCCEEEEEeCcCHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhc--
Confidence 46778888889999999999999999998888899999999999999986444444555667777766532 2222
Q ss_pred CCCcceEEEeCCCHH-HHHHHHHHhhccc
Q 015825 290 SSGIFDHILYNDKLE-ECYENLKKHLGLD 317 (399)
Q Consensus 290 ~~~~~t~Viv~hdle-ea~~~l~~ii~~~ 317 (399)
.+.||++|+|++++ .|+..+..++...
T Consensus 354 -~~~fd~vivNd~l~~~a~~~l~~ii~~~ 381 (391)
T 3tsz_A 354 -HHLFTTTINLNSMNDGWYGALKEAIQQQ 381 (391)
T ss_dssp -GGGCSEEEECCTTCCHHHHHHHHHHHHH
T ss_pred -cccCcEEEECCCcHHHHHHHHHHHHHHh
Confidence 35789999999998 7999999887654
|
| >3shw_A Tight junction protein ZO-1; PDZ-SH3-GUK supramodule, cell adhesion; 2.90A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.3e-14 Score=143.55 Aligned_cols=152 Identities=16% Similarity=0.274 Sum_probs=114.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~ 210 (399)
..+++++|+||||+| |++.|....+..++ +++|| ++..+.+|..|+|
T Consensus 222 ~~~r~iVlsGPsG~G---l~~~Ll~~~p~~f~---s~~TR-pR~gE~dG~~Y~F-------------------------- 268 (468)
T 3shw_A 222 GFLRPVTIFGPIADV---AREKLAREEPDIYQ---IAKSE-PRDAGTDQRSSGI-------------------------- 268 (468)
T ss_dssp SSCCCEEEESTTHHH---HHHHHHHHCTTTEE---ECCCB-C----------CB--------------------------
T ss_pred CCCCEEEEECCCHHH---HHHHHHHhCCCcee---eecCC-CCCcccccccCCc--------------------------
Confidence 478999999999999 99999988876665 24688 8888888888877
Q ss_pred CCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHH-HHHhcc
Q 015825 211 GTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKE-EIKQGK 289 (399)
Q Consensus 211 g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~-~l~~~~ 289 (399)
++.+.++++++.|+.|+||+++++++.++...+.+++||+.+|+++.|.++...+..++++.+++++..+.+ +...
T Consensus 269 -Ts~~~V~~vl~~Gk~~iLdId~qg~~~l~~~~~~p~~IFI~PPS~e~L~~~~~rl~~~see~~~r~~~~a~~~e~~~-- 345 (468)
T 3shw_A 269 -IRLHTIKQIIDQDKHALLDVTPNAVDRLNYAQWYPIVVFLNPDSKQGVKTMRMRLCPESRKSARKLYERSHKLRKNN-- 345 (468)
T ss_dssp -CCHHHHHHHHTTTCEEEECCCHHHHHHHHHTTCCCEEEEEECSCHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHH--
T ss_pred -ccHHHHHHHHHCCCeEEEEeCHHHHHHHHhcCCCCEEEEEeCcCHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhh--
Confidence 578888888999999999999999999998888899999999999999875444444555677777776532 2222
Q ss_pred CCCcceEEEeCCCH-HHHHHHHHHhhcccCC
Q 015825 290 SSGIFDHILYNDKL-EECYENLKKHLGLDGS 319 (399)
Q Consensus 290 ~~~~~t~Viv~hdl-eea~~~l~~ii~~~~~ 319 (399)
.+.||+||+|+++ +.|+..+..++.....
T Consensus 346 -~~~fD~vIvNddl~d~a~~~L~~ii~~~~~ 375 (468)
T 3shw_A 346 -HHLFTTTINLNSMNDGWYGALKEAIQQQQN 375 (468)
T ss_dssp -GGGCSEEEECBTTBCHHHHHHHHHHHHHHT
T ss_pred -hccCCEEEECCCcHHHHHHHHHHHHHHhcC
Confidence 3578999999999 5999999998876543
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=99.50 E-value=6.1e-16 Score=162.80 Aligned_cols=177 Identities=14% Similarity=0.063 Sum_probs=114.7
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCccccee--------eecCCCccc------cccCCeeEEecChHHHHHHH
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSV--------SHTTRAPRA------MEKDGVHYHFTERSVMEKAI 194 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i--------~~ttr~~~~------~~~~~i~yvfq~~~lf~~~~ 194 (399)
...+|++++|+||||||||||+++|+|+++|..|... ......... .....+++++|....++...
T Consensus 113 ~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~ 192 (607)
T 3bk7_A 113 IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAV 192 (607)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECSCGGGGGGTC
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhhhhhhcceEEeechhhhchhhc
Confidence 4569999999999999999999999999999888421 000111000 01124677887654433211
Q ss_pred hhhhhHHHHHHhccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 195 KDGKFLEFASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 195 ~~~~~~E~~~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
.+++.+++..... . ..+.+.++. +.....+-.+..+....+|++..+.+|+.+|++++||||++++|+.++..
T Consensus 193 -~~tv~e~l~~~~~-~----~~~~~~L~~lgL~~~~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~ 266 (607)
T 3bk7_A 193 -KGKVRELLKKVDE-V----GKFEEVVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLK 266 (607)
T ss_dssp -CSBHHHHHHHTCC-S----SCHHHHHHHTTCTTGGGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHH
T ss_pred -cccHHHHhhhhHH-H----HHHHHHHHHcCCCchhCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHH
Confidence 1245555432111 1 112222222 22111222222333345566777779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
+.+.|+++.++ ..++|+++||++.+...+++++.+.++
T Consensus 267 l~~~L~~l~~~--------g~tvIivsHdl~~~~~~adri~vl~~~ 304 (607)
T 3bk7_A 267 VARVIRRLANE--------GKAVLVVEHDLAVLDYLSDVIHVVYGE 304 (607)
T ss_dssp HHHHHHHHHHT--------TCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHHHHhc--------CCEEEEEecChHHHHhhCCEEEEECCC
Confidence 99999887532 238999999999998888998888653
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.49 E-value=1e-15 Score=159.21 Aligned_cols=180 Identities=14% Similarity=0.079 Sum_probs=115.1
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceee---------ecCCCcc------ccccCCeeEEecCh
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS---------HTTRAPR------AMEKDGVHYHFTER 187 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~---------~ttr~~~------~~~~~~i~yvfq~~ 187 (399)
..+.+ ...+|++++|+||||||||||+++|+|.++|..|. +. ....... .....++++++|..
T Consensus 38 l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~q~~ 115 (538)
T 1yqt_A 38 LYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG-DNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYV 115 (538)
T ss_dssp EECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTT-TCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEECSCG
T ss_pred ccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCc-cCcchhhhHHhhCCccHHHHHHHHHHHhhhhhhhhhhh
Confidence 33343 45699999999999999999999999999998884 20 0111100 00112467888765
Q ss_pred HHHHHHHhhhhhHHHHHHhccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhC
Q 015825 188 SVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (399)
Q Consensus 188 ~lf~~~~~~~~~~E~~~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~l 266 (399)
..++... .+++.+++..... . ..+.+.++. +.....+-.+..+....+|++..+.+|+.+|++++||||++++
T Consensus 116 ~~~~~~~-~~~v~e~~~~~~~-~----~~~~~~l~~lgl~~~~~~~~~~LSgGekQRv~iAraL~~~P~lLlLDEPTs~L 189 (538)
T 1yqt_A 116 DLIPKAV-KGKVIELLKKADE-T----GKLEEVVKALELENVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYL 189 (538)
T ss_dssp GGSGGGC-CSBHHHHHHHHCS-S----SCHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTC
T ss_pred hhcchhh-hccHHHHHhhhhH-H----HHHHHHHHHcCCChhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccC
Confidence 4433211 1134444332111 1 112222222 2211112122223334556667777999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccC
Q 015825 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDG 318 (399)
Q Consensus 267 D~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~ 318 (399)
|+.+.+.+.+.|+++.++ ..++|+++||++++...+++++.+.+
T Consensus 190 D~~~~~~l~~~L~~l~~~--------g~tvi~vsHd~~~~~~~~dri~vl~~ 233 (538)
T 1yqt_A 190 DIRQRLNAARAIRRLSEE--------GKSVLVVEHDLAVLDYLSDIIHVVYG 233 (538)
T ss_dssp CHHHHHHHHHHHHHHHHT--------TCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHhc--------CCEEEEEeCCHHHHHHhCCEEEEEcC
Confidence 999999999999887532 34899999999999888999888764
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.47 E-value=9.8e-16 Score=163.40 Aligned_cols=86 Identities=10% Similarity=0.082 Sum_probs=70.4
Q ss_pred HcCCcceeEEEEcCCC--hHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc-
Q 015825 240 RASPLDAIFIFICPPS--MEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL- 316 (399)
Q Consensus 240 ~~~~~~~~~ili~~P~--lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~- 316 (399)
.+|++..+.+|+.+|+ +++||||++++|+.+...+.+.|+++.++ ..++|+++||++.+ ..+++++.+
T Consensus 207 e~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~--------g~tvi~vtHd~~~~-~~~d~ii~l~ 277 (670)
T 3ux8_A 207 EAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL--------GNTLIVVEHDEDTM-LAADYLIDIG 277 (670)
T ss_dssp HHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHT--------TCEEEEECCCHHHH-HHCSEEEEEC
T ss_pred HHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHc--------CCEEEEEeCCHHHH-hhCCEEEEec
Confidence 4555666678999888 99999999999999999999999987532 34899999999865 469999988
Q ss_pred -----cCCeeeecCCCccccCCC
Q 015825 317 -----DGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 317 -----~~~~~~~~~~~~~~~~~p 334 (399)
.+|.++..+++.++...|
T Consensus 278 ~g~~~~~G~i~~~g~~~~~~~~~ 300 (670)
T 3ux8_A 278 PGAGIHGGEVVAAGTPEEVMNDP 300 (670)
T ss_dssp SSSGGGCCSEEEEECHHHHHTCT
T ss_pred ccccccCCEEEEecCHHHHhcCc
Confidence 788888888877766554
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.3e-15 Score=154.29 Aligned_cols=173 Identities=12% Similarity=0.036 Sum_probs=103.1
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceee-----------ecCCCccc------cccCCeeEEecChHHHHH
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS-----------HTTRAPRA------MEKDGVHYHFTERSVMEK 192 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~-----------~ttr~~~~------~~~~~i~yvfq~~~lf~~ 192 (399)
..+|++++|+||||||||||+++|+|++.|..| .+. ...+.... ....++...++.....+.
T Consensus 22 ~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G-~i~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (538)
T 3ozx_A 22 PKNNTILGVLGKNGVGKTTVLKILAGEIIPNFG-DPNSKVGKDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASK 100 (538)
T ss_dssp CCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTT-CTTSCCCHHHHHHHHTTSTTHHHHHHHHTTCCCEEEECSCTTGGGT
T ss_pred CCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCC-ccccccchhhHHhhcCCeeHHHHHHHHhhcccchhhccchhhhhhh
Confidence 358999999999999999999999999999888 331 11111000 000112222222211111
Q ss_pred HHhhhhhHHHHHHhccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 193 AIKDGKFLEFASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 193 ~~~~~~~~E~~~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
. ..+++.+++..... . .. +.+.++. +.....+-.+..+....+|++..+.+++.+|++++||||++++|+.+.
T Consensus 101 ~-~~~~v~~~l~~~~~-~-~~---~~~~l~~l~l~~~~~~~~~~LSgGe~Qrv~iA~aL~~~p~illlDEPts~LD~~~~ 174 (538)
T 3ozx_A 101 F-LKGTVNEILTKIDE-R-GK---KDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRER 174 (538)
T ss_dssp T-CCSBHHHHHHHHCC-S-SC---HHHHHHHTTCGGGTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHH
T ss_pred h-ccCcHHHHhhcchh-H-HH---HHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHH
Confidence 0 01122222211100 0 01 1112211 111111222222333345666777799999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDG 318 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~ 318 (399)
..+.+.|+++.+ ..++|+++||++++...+++++.+.+
T Consensus 175 ~~l~~~l~~l~~---------g~tii~vsHdl~~~~~~~d~i~vl~~ 212 (538)
T 3ozx_A 175 MNMAKAIRELLK---------NKYVIVVDHDLIVLDYLTDLIHIIYG 212 (538)
T ss_dssp HHHHHHHHHHCT---------TSEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHHHHHHHHhC---------CCEEEEEEeChHHHHhhCCEEEEecC
Confidence 888888887531 23899999999999988998887764
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.40 E-value=4.8e-15 Score=162.08 Aligned_cols=174 Identities=14% Similarity=0.088 Sum_probs=114.2
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecCh-HHHHHHHhhhhhHHHHHHh
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTER-SVMEKAIKDGKFLEFASVH 206 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~-~lf~~~~~~~~~~E~~~~~ 206 (399)
+...+|++++|+||||||||||+++|++.. ..|... . . ...++|++|+. ..++.+ ++.+++.+
T Consensus 456 l~I~~Ge~v~LiGpNGsGKSTLLk~LagG~--i~g~~~---~---~---~~~~~~v~q~~~~~~~~l----tv~e~l~~- 519 (986)
T 2iw3_A 456 LRLKRARRYGICGPNGCGKSTLMRAIANGQ--VDGFPT---Q---E---ECRTVYVEHDIDGTHSDT----SVLDFVFE- 519 (986)
T ss_dssp EEEETTCEEEEECSTTSSHHHHHHHHHHTC--STTCCC---T---T---TSCEEETTCCCCCCCTTS----BHHHHHHT-
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHhCCC--cCCCcc---c---c---ceeEEEEcccccccccCC----cHHHHHHH-
Confidence 345699999999999999999999999521 122111 0 0 01246777653 233333 66666654
Q ss_pred ccccCCcHHHHHHHHHc-CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 015825 207 GNLYGTSVEAVEAVADA-GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEE 284 (399)
Q Consensus 207 ~~~~g~~~~~i~~~~~~-g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~ 284 (399)
..++. ...+.+.++. +.. ...+-.+..+...++++...+.+++.+|++++||||++++|+.+++.+.+.|++
T Consensus 520 -~~~~~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~---- 593 (986)
T 2iw3_A 520 -SGVGT-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT---- 593 (986)
T ss_dssp -TCSSC-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----
T ss_pred -hhcCH-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHh----
Confidence 22232 4444444433 110 111111222233345666777799999999999999999999998888888775
Q ss_pred HHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeee-ecCCCccc
Q 015825 285 IKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIAT-NHQTSPKG 330 (399)
Q Consensus 285 l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~-~~~~~~~~ 330 (399)
. ..++|+++||++.+...+++++.+.+|.++ ..+++.++
T Consensus 594 --~-----g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~ 633 (986)
T 2iw3_A 594 --C-----GITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEF 633 (986)
T ss_dssp --S-----CSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHH
T ss_pred --C-----CCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHH
Confidence 1 238999999999999999999999999876 34554443
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.40 E-value=5.7e-15 Score=155.31 Aligned_cols=178 Identities=12% Similarity=0.038 Sum_probs=104.2
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc-ccccC--------------Ce--eEEecChHHHHH
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR-AMEKD--------------GV--HYHFTERSVMEK 192 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~-~~~~~--------------~i--~yvfq~~~lf~~ 192 (399)
..+|++++|+||||||||||+++|+|+++|..| .+........ ..... .. .+.++....++.
T Consensus 100 ~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G-~i~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (608)
T 3j16_B 100 PRPGQVLGLVGTNGIGKSTALKILAGKQKPNLG-RFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPR 178 (608)
T ss_dssp CCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTT-TTCCSSCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEECCCTTTHHH
T ss_pred CCCCCEEEEECCCCChHHHHHHHHhcCCCCCCc-eEecccchhhhhheecChhhhhhhhHHHHHhhhhhhchhhhhhhhh
Confidence 358999999999999999999999999999888 3311000000 00000 00 111111111111
Q ss_pred HHhh--hhhHHHHHHhccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 193 AIKD--GKFLEFASVHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 193 ~~~~--~~~~E~~~~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
.... .++.++.... .......+.+.++. +.....+-.+..+....+|++..+.+++.+|++++||||++++|+.
T Consensus 179 ~~~~~~~~v~~~l~~~---~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~ 255 (608)
T 3j16_B 179 AIKGPVQKVGELLKLR---MEKSPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVK 255 (608)
T ss_dssp HCSSSSSHHHHHHHHH---CCSCHHHHHHHHHHHTCTGGGGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHH
T ss_pred hhcchhhHHHHHHhhh---hhhHHHHHHHHHHHcCCcchhCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHH
Confidence 0000 0111111111 11122333333322 2211112122223333455666777999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
+...+.+.++++.++ ..++|+++|+++++...+++++.+.++
T Consensus 256 ~~~~l~~~l~~l~~~--------g~tvi~vtHdl~~~~~~~drv~vl~~~ 297 (608)
T 3j16_B 256 QRLNAAQIIRSLLAP--------TKYVICVEHDLSVLDYLSDFVCIIYGV 297 (608)
T ss_dssp HHHHHHHHHHGGGTT--------TCEEEEECSCHHHHHHHCSEEEEEESC
T ss_pred HHHHHHHHHHHHHhC--------CCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 888888888875421 348899999999999999998888654
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.5e-14 Score=154.24 Aligned_cols=88 Identities=10% Similarity=0.055 Sum_probs=71.6
Q ss_pred HHHcCCcceeEEEEcCC---ChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhh
Q 015825 238 SVRASPLDAIFIFICPP---SMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHL 314 (399)
Q Consensus 238 ~l~~~~~~~~~ili~~P---~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii 314 (399)
...+|++..+.+|+.+| ++++||||++++|+.+...+.+.++++.++ ..++|+++||++.+ ..+++++
T Consensus 546 gG~~qrv~iAraL~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~--------g~tvi~vtHd~~~~-~~~d~i~ 616 (670)
T 3ux8_A 546 GGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN--------GDTVLVIEHNLDVI-KTADYII 616 (670)
T ss_dssp HHHHHHHHHHHHHHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHT--------TCEEEEECCCHHHH-TTCSEEE
T ss_pred HHHHHHHHHHHHHhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHC--------CCEEEEEeCCHHHH-HhCCEEE
Confidence 34456666677888776 499999999999999999999999887532 34899999999876 5699999
Q ss_pred cc------cCCeeeecCCCccccCCC
Q 015825 315 GL------DGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 315 ~~------~~~~~~~~~~~~~~~~~p 334 (399)
.+ .+|+++..+++.++...+
T Consensus 617 ~l~~~~g~~~G~i~~~g~~~~~~~~~ 642 (670)
T 3ux8_A 617 DLGPEGGDRGGQIVAVGTPEEVAEVK 642 (670)
T ss_dssp EEESSSGGGCCEEEEEECHHHHHTCT
T ss_pred EecCCcCCCCCEEEEecCHHHHHhCC
Confidence 99 889999999888776554
|
| >4dey_A Voltage-dependent L-type calcium channel subunit; maguk, voltage dependent calcium channel, transport protein; 1.95A {Oryctolagus cuniculus} PDB: 4dex_A 1t3l_A 1t3s_A 1vyv_A 1vyu_A 1vyt_A 1t0h_B 1t0j_B 1t0h_A 1t0j_A | Back alignment and structure |
|---|
Probab=99.35 E-value=1.3e-12 Score=126.48 Aligned_cols=173 Identities=20% Similarity=0.296 Sum_probs=114.4
Q ss_pred CcEEEEEcCCCCCHHH---HHhhhhhccCCcccceeeecCCCccccccCCeeEE--ecChHHHHHHHhhhhhHHHHHHhc
Q 015825 133 EKPVVITGPSGVGKGT---LISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYH--FTERSVMEKAIKDGKFLEFASVHG 207 (399)
Q Consensus 133 g~~~~l~GpsG~GKST---l~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yv--fq~~~lf~~~~~~~~~~E~~~~~~ 207 (399)
=++++|+||+++|--+ +-++|...++..|+..|.+| |........+..+. +.....+......+.+.|.
T Consensus 142 ~RPvvlvGP~~~g~~~td~m~~~l~d~l~~~F~~~i~~t-R~~~d~~~~~r~~~~~~~~~~~~e~~~~~~~~~ev----- 215 (337)
T 4dey_A 142 MRPVVLVGPSLKGYEVTDMMQKALFDFLKHRFEGRISIT-RVTADISLAKRSVLNNPSKHAIIERSNTRSSLAEV----- 215 (337)
T ss_dssp SCCEEEECSSCTTSHHHHHHHHHHHHHHHHHTTTSEEEE-EECSCGGGC-------------------CCCHHHH-----
T ss_pred CCceEEECCccccchhHHHHHHHHHHhhHHhcCCccceE-eecchhhhcchhhhhcccchhhhcccccccchHHH-----
Confidence 4789999999999875 34556666666666566544 44444433332221 2222233332333333321
Q ss_pred cccCCcHHHHHHHHHcCCceEEecchh-hHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Q 015825 208 NLYGTSVEAVEAVADAGKRCILDIDVQ-GARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIK 286 (399)
Q Consensus 208 ~~~g~~~~~i~~~~~~g~~~vldld~~-g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~ 286 (399)
....+.+.+..+.|+.++||++++ |++.++...+.++++|+.+|+++.|.+|+.+|+....+.+..++.....++.
T Consensus 216 ---~seVe~i~~v~~~Gk~vILDIDvQnGa~qlk~~~~~~i~IFI~PPS~eeLe~RL~~RGt~~~~rl~~al~~ae~E~~ 292 (337)
T 4dey_A 216 ---QSEIERIFELARTLQLVVLDADTINHPAQLSKTSLAPIVVYVKISSPKVLQRLIKSRGKSQAKHLNVQMVAADKLAQ 292 (337)
T ss_dssp ---HHHHHHHHHHTTTCCEEEEEETTCCSGGGTTTSSCCCEEEEECCSCHHHHHHHHHTTCHHHHTTHHHHHHHHHHHHH
T ss_pred ---HhHHHHHHHHHhCCCEEEEEeCcHHHHHHHHhcCCCCEEEEEECcCHHHHHHHHHhCCchHHHHHHHHHHHHHHHHh
Confidence 122334444455789999999998 9999999899999999999999999999999997666667766666554443
Q ss_pred hccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 287 QGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 287 ~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
. ..+.||+||+|+|++.|+..+..++..
T Consensus 293 ~--~~~~FDyvIVNDdLe~A~~~L~~iI~~ 320 (337)
T 4dey_A 293 C--PPELFDVILDENQLEDACEHLADYLEA 320 (337)
T ss_dssp S--CGGGCSEEECCSSHHHHHHHHHHHHHH
T ss_pred h--CcccCCEEEECCCHHHHHHHHHHHHHH
Confidence 3 246889999999999999999987754
|
| >3kfv_A Tight junction protein ZO-3; structural genomics consortium, SGC, cell junction, cell membrane, membrane, SH3 domain; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.4e-12 Score=122.06 Aligned_cols=147 Identities=20% Similarity=0.357 Sum_probs=111.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~ 210 (399)
...++++|+|| +|+|+++.|+..+|..||..++. ++. +..+.|+
T Consensus 143 ~~~RPvVl~GP---~k~~l~~~L~~~~P~~F~~~v~~-~r~----------------------i~~~~fi---------- 186 (308)
T 3kfv_A 143 SFKRPVVILGP---VADIAMQKLTAEMPDQFEIAETV-SRT----------------------DSPSKII---------- 186 (308)
T ss_dssp SSCCCEEEEST---THHHHHHHHHHHCTTTEEECCCC-------------------------------CC----------
T ss_pred CCCCeEEEeCc---cHHHHHHHHHHhCcccccccccc-ccc----------------------ccCCCee----------
Confidence 45689999999 69999999999999999865541 110 1111222
Q ss_pred CCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccC
Q 015825 211 GTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKS 290 (399)
Q Consensus 211 g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~ 290 (399)
+.+.+++.++.|+.|+||++++|++.++...+.+++||+.+|+++.|.++...+..++++.+++++.... +++. ..
T Consensus 187 --s~~~V~~vl~~Gk~~ILDId~QGa~~lk~~~~~pi~IFI~PPS~eeL~~rr~R~~~esee~~~r~~~aa~-eiE~-~~ 262 (308)
T 3kfv_A 187 --KLDTVRVIAEKDKHALLDVTPSAIERLNYVQYYPIVVFFIPESRPALKALRQWLAPASRRSTRRLYAQAQ-KLRK-HS 262 (308)
T ss_dssp --CHHHHHHHHHTTCEEEECCCHHHHHHHHHTTCCCEEEEEEESCHHHHHHHHHHHSTTCCCCHHHHHHHHH-HHHH-HH
T ss_pred --cHHHHHHHHHCCCcEEEEECHHHHHHHHhcCCCCEEEEEeCCCHHHHHHHHhcCCCCCHHHHHHHHHHHH-HHHH-hh
Confidence 7888999999999999999999999999888889999999999999998744444445556665555542 2321 11
Q ss_pred CCcceEEE-eCCCHHHHHHHHHHhhccc
Q 015825 291 SGIFDHIL-YNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 291 ~~~~t~Vi-v~hdleea~~~l~~ii~~~ 317 (399)
.+.||+|| +|+|++.|+..+..++...
T Consensus 263 ~~~FD~vI~VNDdle~A~~~L~~iI~~~ 290 (308)
T 3kfv_A 263 SHLFTATIPLNGTSDTWYQELKAIIREQ 290 (308)
T ss_dssp GGGCSEEEEECSSSTHHHHHHHHHHHHH
T ss_pred hccCcEEEEcCCCHHHHHHHHHHHHHHh
Confidence 35789999 9999999999999987654
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.34 E-value=1e-14 Score=133.60 Aligned_cols=140 Identities=17% Similarity=0.095 Sum_probs=81.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeee--cCCCccccccCCeeEEecChHHHHHHHhh-hhhHHHHHHhc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSH--TTRAPRAMEKDGVHYHFTERSVMEKAIKD-GKFLEFASVHG 207 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~--ttr~~~~~~~~~i~yvfq~~~lf~~~~~~-~~~~E~~~~~~ 207 (399)
.+|++++|+||||||||||+++|+|+ +|..| .+.. .+... ......++|+||++ .+.+..- ...... ...
T Consensus 20 ~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G-~I~~~~~~~~~-~~~~~~ig~v~q~~--~enl~~~~~~~~~~--~~~ 92 (208)
T 3b85_A 20 DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSK-QVSRIILTRPA-VEAGEKLGFLPGTL--NEKIDPYLRPLHDA--LRD 92 (208)
T ss_dssp HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTT-SCSEEEEEECS-CCTTCCCCSSCC--------CTTTHHHHHH--HTT
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCC-eeeeEEecCCc-hhhhcceEEecCCH--HHHHHHHHHHHHHH--HHH
Confidence 37999999999999999999999999 88888 4321 11111 11234589999975 1111000 000000 000
Q ss_pred cccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHh
Q 015825 208 NLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQ 287 (399)
Q Consensus 208 ~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~ 287 (399)
. .....+.+.++.+. ..++++..+.+++.+|++++||||+++ ++..+.+.|.++ .
T Consensus 93 ~---~~~~~~~~~l~~gl-------------Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l-~---- 147 (208)
T 3b85_A 93 M---VEPEVIPKLMEAGI-------------VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRL-G---- 147 (208)
T ss_dssp T---SCTTHHHHHHHTTS-------------EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTB-C----
T ss_pred h---ccHHHHHHHHHhCC-------------chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHh-c----
Confidence 0 11122333333211 345566677799999999999999999 677777777653 1
Q ss_pred ccCCCcceEEEeCCCHHHHH
Q 015825 288 GKSSGIFDHILYNDKLEECY 307 (399)
Q Consensus 288 ~~~~~~~t~Viv~hdleea~ 307 (399)
...+++ ++||++++.
T Consensus 148 ----~g~tii-vtHd~~~~~ 162 (208)
T 3b85_A 148 ----FGSKMV-VTGDITQVD 162 (208)
T ss_dssp ----TTCEEE-EEEC-----
T ss_pred ----CCCEEE-EECCHHHHh
Confidence 134777 999987654
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=99.32 E-value=5.1e-14 Score=153.97 Aligned_cols=75 Identities=12% Similarity=-0.024 Sum_probs=58.8
Q ss_pred HcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 240 RASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 240 ~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
+++++..+.+++.+|++++||||++++|+.+...+.+.|+++ ..++|+++||++.+...+++++.+.+|
T Consensus 906 QkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~-----------g~tVIiISHD~e~v~~l~DrVivL~~G 974 (986)
T 2iw3_A 906 QKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF-----------EGGVIIITHSAEFTKNLTEEVWAVKDG 974 (986)
T ss_dssp HHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC-----------SSEEEEECSCHHHHTTTCCEEECCBTT
T ss_pred HHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh-----------CCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 345556667899999999999999999988777776665431 138899999999998889999999888
Q ss_pred eeeecC
Q 015825 320 IATNHQ 325 (399)
Q Consensus 320 ~~~~~~ 325 (399)
+++..+
T Consensus 975 ~Iv~~G 980 (986)
T 2iw3_A 975 RMTPSG 980 (986)
T ss_dssp BCCC--
T ss_pred EEEEeC
Confidence 776544
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.21 E-value=6.9e-14 Score=142.59 Aligned_cols=177 Identities=10% Similarity=-0.056 Sum_probs=109.7
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCccc-ceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHh
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG-FSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVH 206 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g-~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~ 206 (399)
....+|++++|+||||||||||+++|+|+..+..| ..+..... + ..+++|+||+..+|+.. ...++.+++ +.
T Consensus 133 l~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~-~----~~~i~~vpq~~~l~~~~-~~~tv~eni-~~ 205 (460)
T 2npi_A 133 MSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD-P----QQPIFTVPGCISATPIS-DILDAQLPT-WG 205 (460)
T ss_dssp HHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC-T----TSCSSSCSSCCEEEECC-SCCCTTCTT-CS
T ss_pred eEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC-c----cCCeeeeccchhhcccc-cccchhhhh-cc
Confidence 34458999999999999999999999999988877 53433221 1 23478899886543211 011444444 32
Q ss_pred ccc-cCCcHHHHHHHHHcCCce--EEec----chhhHHHHHcCCcceeEE--EEcCCCh----HHHHH-HHHhCCCCcHH
Q 015825 207 GNL-YGTSVEAVEAVADAGKRC--ILDI----DVQGARSVRASPLDAIFI--FICPPSM----EELEE-RLRARGTETED 272 (399)
Q Consensus 207 ~~~-~g~~~~~i~~~~~~g~~~--vldl----d~~g~~~l~~~~~~~~~i--li~~P~l----llLDE-pl~~lD~~~~e 272 (399)
... .+... . ...... .+.+ ++..+....++++..+.+ |+.+|++ ++||| |++++|+. .+
T Consensus 206 ~~~~~~~~~---~---~~~~~ll~~~gl~~~~~~~~LSgGq~qrlalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~ 278 (460)
T 2npi_A 206 QSLTSGATL---L---HNKQPMVKNFGLERINENKDLYLECISQLGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LA 278 (460)
T ss_dssp CBCBSSCCS---S---CCBCCEECCCCSSSGGGCHHHHHHHHHHHHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CH
T ss_pred cccccCcch---H---HHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHHhccCcccCcceEEEeCCcccccChh-HH
Confidence 221 11100 0 000011 1111 122233334556666667 8999999 99999 99999987 44
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHH------HHHHHHHH-----hhccc-CCeeeecCCCccc
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLE------ECYENLKK-----HLGLD-GSIATNHQTSPKG 330 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdle------ea~~~l~~-----ii~~~-~~~~~~~~~~~~~ 330 (399)
.+.+.++ ++ ..++++++|+.+ ++...+++ ++.+. +|.++ .+++.++
T Consensus 279 ~l~~l~~----~~-------~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~~~~ 336 (460)
T 2npi_A 279 ELHHIIE----KL-------NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDDVYK 336 (460)
T ss_dssp HHHHHHH----HT-------TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCHHHH
T ss_pred HHHHHHH----Hh-------CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCHHHH
Confidence 4443333 22 237889999766 77788898 89988 88877 6665443
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=1.5e-12 Score=115.03 Aligned_cols=25 Identities=36% Similarity=0.421 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhh
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMK 155 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~ 155 (399)
.+|++++|+||||||||||++++.+
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~~~~ 31 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKKHFK 31 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHcc
Confidence 4799999999999999999998654
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=6.5e-11 Score=118.84 Aligned_cols=136 Identities=12% Similarity=0.104 Sum_probs=80.7
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccCC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGT 212 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g~ 212 (399)
+.+++|+||||||||||+|+|+|+.++..| .+........ + .+|+||.. .++.+ ++.++..+... ..
T Consensus 69 ~~~valvG~nGaGKSTLln~L~Gl~~p~~G-sI~~~g~~~t---~--~~~v~q~~-~~~~l----tv~D~~g~~~~--~~ 135 (413)
T 1tq4_A 69 VLNVAVTGETGSGKSSFINTLRGIGNEEEG-AAKTGVVEVT---M--ERHPYKHP-NIPNV----VFWDLPGIGST--NF 135 (413)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTCCTTSTT-SCCCCC-------C--CCEEEECS-SCTTE----EEEECCCGGGS--SC
T ss_pred CeEEEEECCCCCcHHHHHHHHhCCCCccCc-eEEECCeecc---e--eEEecccc-ccCCe----eehHhhcccch--HH
Confidence 349999999999999999999999998888 4332111111 1 26788874 33333 44444333211 11
Q ss_pred cHHHHHHHH--Hc-CCceEEecc--hhh----HHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHH
Q 015825 213 SVEAVEAVA--DA-GKRCILDID--VQG----ARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAK 282 (399)
Q Consensus 213 ~~~~i~~~~--~~-g~~~vldld--~~g----~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~ 282 (399)
......+.+ .. .....++.. .+. ++.+.. ...++.+.+..|+++++|||++++|+.+++++.+.++++.
T Consensus 136 ~~~~~L~~~~L~~~~~~~~lS~G~~~kqrv~la~aL~~-~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~ 213 (413)
T 1tq4_A 136 PPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISM-MKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNC 213 (413)
T ss_dssp CHHHHHHHTTGGGCSEEEEEESSCCCHHHHHHHHHHHH-TTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCccCCeEEeCCCCccHHHHHHHHHHHh-cCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHH
Confidence 122221111 11 111123322 111 111222 2346677788999999999999999999999999998875
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.8e-12 Score=141.43 Aligned_cols=86 Identities=14% Similarity=0.083 Sum_probs=69.6
Q ss_pred cCCcceeEEEEcC---CChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc-
Q 015825 241 ASPLDAIFIFICP---PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL- 316 (399)
Q Consensus 241 ~~~~~~~~ili~~---P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~- 316 (399)
+|++..+.+|+.. |++++||||++++|+.+.+.+++.|.++.++ ..++|+++||++.+. .+++++.+
T Consensus 811 rQRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~--------G~TVIvI~HdL~~i~-~ADrIivLg 881 (916)
T 3pih_A 811 AQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDR--------GNTVIVIEHNLDVIK-NADHIIDLG 881 (916)
T ss_dssp HHHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHT--------TCEEEEECCCHHHHT-TCSEEEEEE
T ss_pred HHHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc--------CCEEEEEeCCHHHHH-hCCEEEEec
Confidence 4444455566654 4699999999999999999999999887532 338999999998764 59999999
Q ss_pred -----cCCeeeecCCCccccCCCc
Q 015825 317 -----DGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 317 -----~~~~~~~~~~~~~~~~~p~ 335 (399)
.+|+++..++|+++...|.
T Consensus 882 p~gg~~~G~Iv~~Gtpeel~~~~~ 905 (916)
T 3pih_A 882 PEGGKEGGYIVATGTPEEIAKNPH 905 (916)
T ss_dssp SSSGGGCCEEEEEESHHHHHSCTT
T ss_pred CCCCCCCCEEEEEcCHHHHHhCCc
Confidence 8899999999999888774
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=98.99 E-value=4.9e-11 Score=111.14 Aligned_cols=178 Identities=16% Similarity=0.215 Sum_probs=94.1
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhh---hccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHh--
Q 015825 132 VEKPVVITGPSGVGKGTLISMLM---KEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVH-- 206 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~---~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~-- 206 (399)
++++++|+|||||||||++++|+ |...+..| .+..............+.+++++..+++.. ++.+++...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G-~i~~~~~~~~~~~~~~i~~~~~~~~~~~~~----~v~~~l~~~l~ 100 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSG-HFLRENIKASTEVGEMAKQYIEKSLLVPDH----VITRLMMSELE 100 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHH-HHHHHHHHTTCHHHHHHHHHHHTTCCCCHH----HHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHH-HHHHHHHhcCChHHHHHHHHHHcCCCCCHH----HHHHHHHHHHH
Confidence 46899999999999999999999 87766555 322110000000000012223332222222 222322210
Q ss_pred ---c---cccC--CcHHHHHHHHH---cCCceEEecchhhH-HHHHcCCc----ceeEEE-EcCCChHHHH----HHHHh
Q 015825 207 ---G---NLYG--TSVEAVEAVAD---AGKRCILDIDVQGA-RSVRASPL----DAIFIF-ICPPSMEELE----ERLRA 265 (399)
Q Consensus 207 ---~---~~~g--~~~~~i~~~~~---~g~~~vldld~~g~-~~l~~~~~----~~~~il-i~~P~lllLD----Epl~~ 265 (399)
+ .+.+ ........... -+..+.+++++... ..+..+.. ..+.++ +.+|+++++| ||+++
T Consensus 101 ~~~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSgrv~al~~~~P~~lllD~~~~EP~~~ 180 (246)
T 2bbw_A 101 NRRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSGRVYNLDFNPPHVHGIDDVTGEPLVQ 180 (246)
T ss_dssp TCTTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTTEEEETTTSCCSSTTBCTTTCCBCBC
T ss_pred hcCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCCCccccccCCCccccccccccccccc
Confidence 0 0122 22222222221 12344556655432 23322211 122455 8899999999 99999
Q ss_pred CCCCcHHHHHHHHHHHHHHHH----hccCCCcceEEEeCCCHHHHHHHHHHhhc
Q 015825 266 RGTETEDQILKRLRNAKEEIK----QGKSSGIFDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 266 lD~~~~e~i~~~L~~~~~~l~----~~~~~~~~t~Viv~hdleea~~~l~~ii~ 315 (399)
+|+.+++.+++++..+.++.. .+...+.+..|-.+.+ ++++..+.+++.
T Consensus 181 ld~~~~~~i~~~l~~~~~~~~~v~~~~~~~~~~~~id~~~~-~~v~~~i~~~l~ 233 (246)
T 2bbw_A 181 QEDDKPEAVAARLRQYKDVAKPVIELYKSRGVLHQFSGTET-NKIWPYVYTLFS 233 (246)
T ss_dssp CGGGSHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEECSCH-HHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhHHHHHHHHhhcCcEEEECCCCc-HHHHHHHHHHHH
Confidence 999999999999988765522 2221222222333335 888888877664
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.99 E-value=6.9e-11 Score=114.09 Aligned_cols=140 Identities=14% Similarity=0.081 Sum_probs=84.5
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-c---------ccccCCeeEEecChH-HHHHHHhhhh
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-R---------AMEKDGVHYHFTERS-VMEKAIKDGK 198 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-~---------~~~~~~i~yvfq~~~-lf~~~~~~~~ 198 (399)
..+|++++|+|||||||||+++.|++.+.+..| .+....... + .....+++|++|+.. .++.+ +
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g-~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~~----~ 171 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGT-KVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT----V 171 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTC-CEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHHH----H
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCC-eEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHHH----H
Confidence 457999999999999999999999999988777 444322111 1 111346899999877 66655 5
Q ss_pred hHHHHHHhccccCCcHHHHHHHHHcCCceEEec------chhhHHHHHcCCcceeEEEEcCCC--hHHHHHHHHhCCCCc
Q 015825 199 FLEFASVHGNLYGTSVEAVEAVADAGKRCILDI------DVQGARSVRASPLDAIFIFICPPS--MEELEERLRARGTET 270 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~i~~~~~~g~~~vldl------d~~g~~~l~~~~~~~~~ili~~P~--lllLDEpl~~lD~~~ 270 (399)
+.+++.+... .+ ....++|. .......+.+++.....+++..|+ +++|| |++++|+.+
T Consensus 172 v~e~l~~~~~-~~------------~d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-ptsglD~~~ 237 (302)
T 3b9q_A 172 LSKAVKRGKE-EG------------YDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLP 237 (302)
T ss_dssp HHHHHHHHHH-TT------------CSEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHH
T ss_pred HHHHHHHHHH-cC------------CcchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEe-CCCCcCHHH
Confidence 5566554211 11 01122221 111222334344444446778899 99999 999998643
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCC
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYND 301 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h 301 (399)
+ ++.+.++. ..+.+++||
T Consensus 238 ~------~~~~~~~~-------g~t~iiiTh 255 (302)
T 3b9q_A 238 Q------AREFNEVV-------GITGLILTK 255 (302)
T ss_dssp H------HHHHHHHT-------CCCEEEEEC
T ss_pred H------HHHHHHhc-------CCCEEEEeC
Confidence 2 22322221 348899999
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.2e-11 Score=133.84 Aligned_cols=86 Identities=12% Similarity=0.062 Sum_probs=68.8
Q ss_pred HcCCcceeEEEEcC---CChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 240 RASPLDAIFIFICP---PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 240 ~~~~~~~~~ili~~---P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
.+|++..+.+|+.+ |++++||||++++|+...+.+.+.|.++.++ ..++|+++||++++ ..+++++.+
T Consensus 735 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~--------G~tVIvisHdl~~i-~~aDrii~L 805 (842)
T 2vf7_A 735 EAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDA--------GNTVIAVEHKMQVV-AASDWVLDI 805 (842)
T ss_dssp HHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT--------TCEEEEECCCHHHH-TTCSEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--------CCEEEEEcCCHHHH-HhCCEEEEE
Confidence 34445555577775 6899999999999999999999999886532 33899999999998 779999999
Q ss_pred ------cCCeeeecCCCccccCCC
Q 015825 317 ------DGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 317 ------~~~~~~~~~~~~~~~~~p 334 (399)
.+|+++..+++.++...+
T Consensus 806 ~p~~g~~~G~Iv~~g~~~el~~~~ 829 (842)
T 2vf7_A 806 GPGAGEDGGRLVAQGTPAEVAQAA 829 (842)
T ss_dssp CSSSGGGCCSEEEEECHHHHTTCT
T ss_pred CCCCCCCCCEEEEEcCHHHHHhCc
Confidence 688888888887776654
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=98.95 E-value=9.1e-11 Score=118.86 Aligned_cols=176 Identities=13% Similarity=0.099 Sum_probs=109.5
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCC---Cccc---------cccCCeeEEecC-hHHHHHHHh
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTR---APRA---------MEKDGVHYHFTE-RSVMEKAIK 195 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr---~~~~---------~~~~~i~yvfq~-~~lf~~~~~ 195 (399)
...+|++++|+||||||||||+++|+++..+..| .+..... .... ...+.++|+||+ ...++++
T Consensus 153 ~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G-~i~~~G~r~~ev~~~~~~~~~~~~l~r~i~~v~q~~~~~~~~~-- 229 (438)
T 2dpy_A 153 TVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVI-VVGLIGERGREVKDFIENILGPDGRARSVVIAAPADVSPLLRM-- 229 (438)
T ss_dssp CCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEE-EEEEESCCHHHHHHHHHTTTHHHHHHTEEEEEECTTSCHHHHH--
T ss_pred EecCCCEEEEECCCCCCHHHHHHHHhcccCCCeE-EEEEeceecHHHHHHHHhhccccccCceEEEEECCCCCHHHHH--
Confidence 3458999999999999999999999999998877 4443222 1111 122457899985 4456665
Q ss_pred hhhhHHHHHHhccccCCcHHHHHHHHHcCCce--EEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 196 DGKFLEFASVHGNLYGTSVEAVEAVADAGKRC--ILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 196 ~~~~~E~~~~~~~~~g~~~~~i~~~~~~g~~~--vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
++.++..+...++. ..+..+ +++. ...+.... ++...+ +.+|++ ++++|+.+...
T Consensus 230 --~v~~~~~~~ae~~~----------~~~~~v~~~ld~-l~~lS~g~-qrvslA---l~~p~~------t~glD~~~~~~ 286 (438)
T 2dpy_A 230 --QGAAYATRIAEDFR----------DRGQHVLLIMDS-LTRYAMAQ-REIALA---IGEPPA------TKGYPPSVFAK 286 (438)
T ss_dssp --HHHHHHHHHHHHHH----------TTTCEEEEEEEC-HHHHHHHH-HHHHHH---TTCCCC------SSSCCTTHHHH
T ss_pred --HHHHHHHHHHHHHH----------hCCCCHHHHHHh-HHHHHHHH-HHHHHH---hCCCcc------cccCCHHHHHH
Confidence 56666554332221 012222 2232 11111111 222222 667766 88999999888
Q ss_pred HHHHHHHHHHHHHhccCCCc----ceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 274 ILKRLRNAKEEIKQGKSSGI----FDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~----~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
+.+.+.++...- ...+. .++++++||++ ...+++++.+.+|.++..+++.+....|.
T Consensus 287 l~~ll~r~~~~~---~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl~~~~~~~~~~Pa 347 (438)
T 2dpy_A 287 LPALVERAGNGI---HGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVLSRRLAEAGHYPA 347 (438)
T ss_dssp HHHHHTTCSCCS---TTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEECHHHHHTTCSSC
T ss_pred HHHHHHHHHhcc---CCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEEeCCHHHccCCCC
Confidence 888887643200 00121 37778999987 45689999999999998877766665553
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=98.94 E-value=2.1e-11 Score=132.63 Aligned_cols=87 Identities=10% Similarity=0.061 Sum_probs=68.8
Q ss_pred HcCCcceeEEEEcC---CChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 240 RASPLDAIFIFICP---PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 240 ~~~~~~~~~ili~~---P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
.+|++..+.+|+.+ |++++||||++++|+.+...+.+.|.++.++ ..++|+++||++++ ..+++++.+
T Consensus 850 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~--------G~TVIvisHdl~~i-~~aDrIivL 920 (972)
T 2r6f_A 850 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDN--------GDTVLVIEHNLDVI-KTADYIIDL 920 (972)
T ss_dssp HHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHT--------TCEEEEECCCHHHH-TTCSEEEEE
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhC--------CCEEEEEcCCHHHH-HhCCEEEEE
Confidence 44555555677765 4899999999999999999999999886532 33899999999986 579999999
Q ss_pred ------cCCeeeecCCCccccCCCc
Q 015825 317 ------DGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 317 ------~~~~~~~~~~~~~~~~~p~ 335 (399)
.+|+++..+++.++...+.
T Consensus 921 ~p~gG~~~G~Iv~~g~~~el~~~~~ 945 (972)
T 2r6f_A 921 GPEGGDRGGQIVAVGTPEEVAEVKE 945 (972)
T ss_dssp CSSSTTSCCSEEEEESHHHHHTCTT
T ss_pred cCCCCCCCCEEEEecCHHHHHhCch
Confidence 6788888888887776543
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=98.93 E-value=3e-10 Score=109.65 Aligned_cols=141 Identities=13% Similarity=0.057 Sum_probs=81.2
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecC----CCcc------ccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTT----RAPR------AMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~tt----r~~~------~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
+|++++|+||||||||||+++|++++.+..| .+.... +... .....+++|+||.+..++.. ++.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g-~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~----~v~~ 175 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGK-KVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAA----LAYD 175 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTC-CEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHH----HHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCC-EEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHH----HHHH
Confidence 6899999999999999999999999988777 444321 2110 01134688999987766655 4445
Q ss_pred HHHHhccccCCcHHHHHHHHHcCCceEEec------chhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHH
Q 015825 202 FASVHGNLYGTSVEAVEAVADAGKRCILDI------DVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQIL 275 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~g~~~vldl------d~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~ 275 (399)
++.+... ......++|. .......+++++.....+++..|+..+| .+|+.+...+.
T Consensus 176 ~v~~~~~-------------~~~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~ 237 (304)
T 1rj9_A 176 AVQAMKA-------------RGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGL 237 (304)
T ss_dssp HHHHHHH-------------HTCSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHH
T ss_pred HHHHHHh-------------CCCCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHH
Confidence 5433210 0111223331 1111122222222222345555653322 56666666777
Q ss_pred HHHHHHHHHHHhccCCCcceEEEeCCC
Q 015825 276 KRLRNAKEEIKQGKSSGIFDHILYNDK 302 (399)
Q Consensus 276 ~~L~~~~~~l~~~~~~~~~t~Viv~hd 302 (399)
+.+..+.++.. .+.+++||+
T Consensus 238 ~~~~~~~~~~~-------~t~iivTh~ 257 (304)
T 1rj9_A 238 EQAKKFHEAVG-------LTGVIVTKL 257 (304)
T ss_dssp HHHHHHHHHHC-------CSEEEEECT
T ss_pred HHHHHHHHHcC-------CcEEEEECC
Confidence 77776655432 388999996
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.92 E-value=2e-10 Score=113.24 Aligned_cols=140 Identities=14% Similarity=0.081 Sum_probs=85.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-c---------ccccCCeeEEecChH-HHHHHHhhhh
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-R---------AMEKDGVHYHFTERS-VMEKAIKDGK 198 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-~---------~~~~~~i~yvfq~~~-lf~~~~~~~~ 198 (399)
..+|++++|+||||||||||++.|++.+.+..| .+....... + ...+.+++|++|+.. .++.. +
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G-~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~----t 228 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGT-KVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT----V 228 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTC-CEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH----H
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhccccCC-EEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh----h
Confidence 457999999999999999999999999988767 444322111 1 112346899999876 66655 5
Q ss_pred hHHHHHHhccccCCcHHHHHHHHHcCCceEEec------chhhHHHHHcCCcceeEEEEcCCC--hHHHHHHHHhCCCCc
Q 015825 199 FLEFASVHGNLYGTSVEAVEAVADAGKRCILDI------DVQGARSVRASPLDAIFIFICPPS--MEELEERLRARGTET 270 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~i~~~~~~g~~~vldl------d~~g~~~l~~~~~~~~~ili~~P~--lllLDEpl~~lD~~~ 270 (399)
+.+++.+... .+ ....++|. .......+.+++.....+++..|+ +++|| |++++|+.+
T Consensus 229 v~e~l~~~~~-~~------------~d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLD-pttglD~~~ 294 (359)
T 2og2_A 229 LSKAVKRGKE-EG------------YDVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLD-GNTGLNMLP 294 (359)
T ss_dssp HHHHHHHHHH-TT------------CSEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHH
T ss_pred HHHHHHHHHh-CC------------CHHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEc-CCCCCCHHH
Confidence 5565554311 00 11123331 111222334344444456778899 99999 999998653
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCC
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYND 301 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h 301 (399)
+ ++.+.+.. ..+.+++||
T Consensus 295 ~------~~~~~~~~-------g~t~iiiTh 312 (359)
T 2og2_A 295 Q------AREFNEVV-------GITGLILTK 312 (359)
T ss_dssp H------HHHHHHHT-------CCCEEEEES
T ss_pred H------HHHHHHhc-------CCeEEEEec
Confidence 2 22222222 348899999
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=98.86 E-value=1.7e-10 Score=121.60 Aligned_cols=145 Identities=10% Similarity=0.101 Sum_probs=79.9
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccCC-cccceeeecC-------CCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHh
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFPS-MFGFSVSHTT-------RAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVH 206 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~~-~~g~~i~~tt-------r~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~ 206 (399)
.++|+||||||||||+++|+|+..| ..| .+.... ..........++|+||+..+++.+ ++.+++.+.
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~~P~~sG-~vt~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~l~~~~----tv~e~i~~~ 121 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVALPRGSG-IVTRCPLVLKLKKLVNEDKWRGKVSYQDYEIEISDAS----EVEKEINKA 121 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC--------CCCSCEEEEEEECSSSSCCEEEESCC---CCCCCHH----HHHTTHHHH
T ss_pred eEEEECCCCChHHHHHHHHhCCCCCCCCC-eEEEcCEEEEEecCCccccceeEEeeecccccCCCHH----HHHHHHHHH
Confidence 4999999999999999999999877 566 332111 010111223578999987776655 566665543
Q ss_pred ccccCCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHH------HHhCCCCcHHHHHHHHHH
Q 015825 207 GNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEER------LRARGTETEDQILKRLRN 280 (399)
Q Consensus 207 ~~~~g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEp------l~~lD~~~~e~i~~~L~~ 280 (399)
...++. .+.. +..............|++.++||| ++++|+.....+.+.+..
T Consensus 122 ~~~~~~----------~~~~------------~s~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~ 179 (608)
T 3szr_A 122 QNAIAG----------EGMG------------ISHELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKK 179 (608)
T ss_dssp HHHHHC----------SSSC------------CCSCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHH
T ss_pred HHHhcC----------Cccc------------cchHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHH
Confidence 211100 0000 001111122234456888888998 999999988888888877
Q ss_pred HHHHHHhccCCCcceEEEeCCCHH----HHHHHHHH
Q 015825 281 AKEEIKQGKSSGIFDHILYNDKLE----ECYENLKK 312 (399)
Q Consensus 281 ~~~~l~~~~~~~~~t~Viv~hdle----ea~~~l~~ 312 (399)
+..+ .....+++++|+++ .+...+++
T Consensus 180 ~l~~------~~~iil~vvt~~~d~a~~~~l~la~~ 209 (608)
T 3szr_A 180 YIQR------QETISLVVVPSNVDIATTEALSMAQE 209 (608)
T ss_dssp HTTS------SSCCEEEEEESSSCTTTCHHHHHHHH
T ss_pred HHhc------CCCCceEEEeccchhccHHHHHHHHH
Confidence 4321 22345668888766 34444544
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=1.5e-09 Score=98.26 Aligned_cols=129 Identities=17% Similarity=0.161 Sum_probs=67.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHh-ccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVH-GNL 209 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~-~~~ 209 (399)
.+|++++|+||||||||||+++|++++.+ .++|++|+...+.. ..-++.++..+. +..
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-------------------~i~~v~~d~~~~~~--~~~~~~~~~~~~~~~~ 62 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGE-------------------RVALLPMDHYYKDL--GHLPLEERLRVNYDHP 62 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGG-------------------GEEEEEGGGCBCCC--TTSCHHHHHHSCTTSG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCC-------------------CeEEEecCccccCc--ccccHHHhcCCCCCCh
Confidence 36889999999999999999999998753 14555554322210 000222222111 000
Q ss_pred cCCcHHHHHHHHH---cCCceE---EecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHh-------CCCCcHHHHHH
Q 015825 210 YGTSVEAVEAVAD---AGKRCI---LDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRA-------RGTETEDQILK 276 (399)
Q Consensus 210 ~g~~~~~i~~~~~---~g~~~v---ldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~-------lD~~~~e~i~~ 276 (399)
.....+.+.+.++ .+.... .+... +.+....++.....+++.+|.++++|||+++ +|...+..+++
T Consensus 63 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~s~-g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r 141 (211)
T 3asz_A 63 DAFDLALYLEHAQALLRGLPVEMPVYDFRA-YTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIR 141 (211)
T ss_dssp GGBCHHHHHHHHHHHHTTCCEEECCEETTT-TEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHcCCCcCCCcccCcc-cCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHH
Confidence 0011222222221 111110 11100 0000001122334478888889999999999 88888887877
Q ss_pred HHHHH
Q 015825 277 RLRNA 281 (399)
Q Consensus 277 ~L~~~ 281 (399)
++.+.
T Consensus 142 ~l~r~ 146 (211)
T 3asz_A 142 RLKRD 146 (211)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.2e-08 Score=90.13 Aligned_cols=158 Identities=19% Similarity=0.164 Sum_probs=84.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc---cccCCeeEEecChHHHHHHHhhhhhHHHHHHhc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA---MEKDGVHYHFTERSVMEKAIKDGKFLEFASVHG 207 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~---~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~ 207 (399)
.+|++++|+|||||||||++++|++.+ | .+...+..... ......+++||+...++.+ +..++..
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~----g-~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~--- 94 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET----G-LEFAEADAFHSPENIATMQRGIPLTDEDRWPWL----RSLAEWM--- 94 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH----C-CEEEEGGGGSCHHHHHHHHTTCCCCHHHHHHHH----HHHHHHH---
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh----C-CeEEcccccccHHHHHHHhcCCCCCCcccccHH----HHHHHHH---
Confidence 478999999999999999999999876 4 22221111110 0111246777775554443 2333221
Q ss_pred cccCCcHHHHHHHHHcCCceEEecch---hhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC--cHHHHHHHHHHHH
Q 015825 208 NLYGTSVEAVEAVADAGKRCILDIDV---QGARSVRASPLDAIFIFICPPSMEELEERLRARGTE--TEDQILKRLRNAK 282 (399)
Q Consensus 208 ~~~g~~~~~i~~~~~~g~~~vldld~---~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~--~~e~i~~~L~~~~ 282 (399)
...+..+..++++... .....++........+++. ++.+++-+|+..|+.. ..+.+.+.+.
T Consensus 95 ----------~~~~~~g~~viid~~~~~~~~~~~l~~~~~~~~vv~l~-~~~e~l~~Rl~~R~~~~~~~~~l~~~~~--- 160 (200)
T 4eun_A 95 ----------DARADAGVSTIITCSALKRTYRDVLREGPPSVDFLHLD-GPAEVIKGRMSKREGHFMPASLLQSQLA--- 160 (200)
T ss_dssp ----------HHHHHTTCCEEEEECCCCHHHHHHHTTSSSCCEEEEEE-CCHHHHHHHHTTCSCCSSCGGGHHHHHH---
T ss_pred ----------HHHHhcCCCEEEEchhhhHHHHHHHHHhCCceEEEEEe-CCHHHHHHHHHhcccCCCCHHHHHHHHH---
Confidence 1122345556666422 1222222222223344444 4589999999888532 2222222221
Q ss_pred HHHHhccCCCcceEEEeCC-CHHHHHHHHHHhhcc
Q 015825 283 EEIKQGKSSGIFDHILYND-KLEECYENLKKHLGL 316 (399)
Q Consensus 283 ~~l~~~~~~~~~t~Viv~h-dleea~~~l~~ii~~ 316 (399)
+.... +....+++|.+. +++++.+.+.+++..
T Consensus 161 -~~~~~-~~~~~~~~Id~~~~~~e~~~~I~~~l~~ 193 (200)
T 4eun_A 161 -TLEAL-EPDESGIVLDLRQPPEQLIERALTWLDI 193 (200)
T ss_dssp -HCCCC-CTTSCEEEEETTSCHHHHHHHHHHHHCC
T ss_pred -HhCCC-CCCCCeEEEECCCCHHHHHHHHHHHHHh
Confidence 11111 122356666554 899999888876654
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=98.81 E-value=2.9e-11 Score=121.01 Aligned_cols=71 Identities=6% Similarity=0.010 Sum_probs=55.1
Q ss_pred CcceeEEEEcCC--ChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc----
Q 015825 243 PLDAIFIFICPP--SMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL---- 316 (399)
Q Consensus 243 ~~~~~~ili~~P--~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~---- 316 (399)
++..+.+++.+| ++++||||++++|+.+.+.+.+.|+++.+ ..++++++|+++. +..+++++.+
T Consensus 303 rl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~---------~~~vi~itH~~~~-~~~~d~i~~l~k~~ 372 (415)
T 4aby_A 303 RVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD---------TRQVLVVTHLAQI-AARAHHHYKVEKQV 372 (415)
T ss_dssp HHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTT---------TSEEEEECSCHHH-HTTCSEEEEEEEEE
T ss_pred HHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhC---------CCEEEEEeCcHHH-HhhcCeEEEEEEec
Confidence 333444677888 99999999999999999999888887531 3488999999855 4678888888
Q ss_pred cCCeeee
Q 015825 317 DGSIATN 323 (399)
Q Consensus 317 ~~~~~~~ 323 (399)
.+|.++.
T Consensus 373 ~~G~~~~ 379 (415)
T 4aby_A 373 EDGRTVS 379 (415)
T ss_dssp ETTEEEE
T ss_pred cCCceEE
Confidence 6666554
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=3.4e-10 Score=109.68 Aligned_cols=148 Identities=15% Similarity=0.112 Sum_probs=87.0
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccc
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNL 209 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~ 209 (399)
..+|++++|+||||||||||+++|++++++..|. ..++|++|+..+++. +..++..+.. .
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~--------------~~v~~v~qd~~~~~~-----t~~e~~~~~~-~ 146 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH--------------PRVDLVTTDGFLYPN-----AELQRRNLMH-R 146 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC--------------CCEEEEEGGGGBCCH-----HHHHHTTCTT-C
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCC--------------CeEEEEecCccCCcc-----cHHHHHHHHH-h
Confidence 4589999999999999999999999998765441 237899998655443 3444443321 1
Q ss_pred cCCc----HHHHHHHH---HcCCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHH
Q 015825 210 YGTS----VEAVEAVA---DAGKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNA 281 (399)
Q Consensus 210 ~g~~----~~~i~~~~---~~g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~ 281 (399)
++.+ .+.+.+.+ ..+.. ... ..+....+++.....+++.+|+++++|||+...|+...
T Consensus 147 ~g~~~~~d~~~~~~~L~~l~~~~~~~~~----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~---------- 212 (312)
T 3aez_A 147 KGFPESYNRRALMRFVTSVKSGSDYACA----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTL---------- 212 (312)
T ss_dssp TTSGGGBCHHHHHHHHHHHHTTCSCEEE----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSC----------
T ss_pred cCCChHHHHHHHHHHHHHhCCCcccCCc----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchH----------
Confidence 2222 12222222 22221 111 01111223444556688999999999999998875210
Q ss_pred HHHHHhccCCCcceE-EEeCCCHHHHHHH-HHHhhcccC
Q 015825 282 KEEIKQGKSSGIFDH-ILYNDKLEECYEN-LKKHLGLDG 318 (399)
Q Consensus 282 ~~~l~~~~~~~~~t~-Viv~hdleea~~~-l~~ii~~~~ 318 (399)
.+ ...++. |++.++.+.+... ++|.+.+.+
T Consensus 213 --~l-----~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd 244 (312)
T 3aez_A 213 --MV-----SDLFDFSLYVDARIEDIEQWYVSRFLAMRT 244 (312)
T ss_dssp --CG-----GGGCSEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred --HH-----HHhcCcEEEEECCHHHHHHHHHHHHHHHHh
Confidence 01 112343 4677787776654 455554443
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.81 E-value=1.1e-10 Score=104.09 Aligned_cols=136 Identities=13% Similarity=0.121 Sum_probs=72.7
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccCCc-ccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccCCc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFPSM-FGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTS 213 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~~~-~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g~~ 213 (399)
.++|+||||||||||+++|+|++... .|...... +. ......++|++|+... .++. + ...+...
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~g~~~~~~-~~--~~~~~~ig~~~~~~~~----------~~~~-~-~~~~~~~ 66 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEV-RD--PETKKRTGFRIITTEG----------KKKI-F-SSKFFTS 66 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEE-C--------CCEEEEEETTC----------CEEE-E-EETTCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCCCEEhhhh-cc--ccccceeEEEeecCcH----------HHHH-H-HhhcCCc
Confidence 58999999999999999999987532 22111110 00 0112347899887511 0111 0 1111000
Q ss_pred HHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEE-----EEcCCChHHHHH--HHHhCCCCcHHHHHHHHHHHHHHHH
Q 015825 214 VEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFI-----FICPPSMEELEE--RLRARGTETEDQILKRLRNAKEEIK 286 (399)
Q Consensus 214 ~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~i-----li~~P~lllLDE--pl~~lD~~~~e~i~~~L~~~~~~l~ 286 (399)
. ..++-.+..+....+++...+.+ ++.+|++++||| |++++|+...+.+.+.+..
T Consensus 67 ---------~---~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~------ 128 (178)
T 1ye8_A 67 ---------K---KLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD------ 128 (178)
T ss_dssp ---------S---SEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC------
T ss_pred ---------c---ccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc------
Confidence 0 00110011122223333444444 778999999999 9999998766666655543
Q ss_pred hccCCCcceEEEeCC---CHHHHHH
Q 015825 287 QGKSSGIFDHILYND---KLEECYE 308 (399)
Q Consensus 287 ~~~~~~~~t~Viv~h---dleea~~ 308 (399)
...++++++| +.+.+..
T Consensus 129 -----~~~~~i~~~H~~h~~~~~~~ 148 (178)
T 1ye8_A 129 -----PNVNVVATIPIRDVHPLVKE 148 (178)
T ss_dssp -----TTSEEEEECCSSCCSHHHHH
T ss_pred -----CCCeEEEEEccCCCchHHHH
Confidence 1235777775 6555443
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=98.74 E-value=2.9e-08 Score=88.09 Aligned_cols=168 Identities=17% Similarity=0.001 Sum_probs=81.1
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccCC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGT 212 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g~ 212 (399)
|++++|+|||||||||++++|++.. .| .+.......... ...+++++....+... ++.+++.+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~---~g-~~~i~~d~~~~~--~~~~~~~~~~~~~~~~----~~~~~l~~~~----- 66 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQL---DN-SAYIEGDIINHM--VVGGYRPPWESDELLA----LTWKNITDLT----- 66 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHS---SS-EEEEEHHHHHTT--CCTTCCCGGGCHHHHH----HHHHHHHHHH-----
T ss_pred CeEEEEECCCCCcHHHHHHHHhccc---CC-eEEEcccchhhh--hccccccCccchhHHH----HHHHHHHHHH-----
Confidence 5789999999999999999998733 33 232221111110 1134555543222222 3333332221
Q ss_pred cHHHHHHHHHcCCceEEec--chhhHHHHHc-----CCcceeEEEEcCCChHHHHHHHHhCCCCc---HHHHHHHHHHHH
Q 015825 213 SVEAVEAVADAGKRCILDI--DVQGARSVRA-----SPLDAIFIFICPPSMEELEERLRARGTET---EDQILKRLRNAK 282 (399)
Q Consensus 213 ~~~~i~~~~~~g~~~vldl--d~~g~~~l~~-----~~~~~~~ili~~P~lllLDEpl~~lD~~~---~e~i~~~L~~~~ 282 (399)
......+..++++. .+...+.++. .....+.++...++.+.+.+|...|..+. .+.+.. ...
T Consensus 67 -----~~~~~~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~~ld~~~~~~-~~~-- 138 (189)
T 2bdt_A 67 -----VNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDEQMGERCLEL-VEE-- 138 (189)
T ss_dssp -----HHHHHTTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC----CGGGGHH-HHH--
T ss_pred -----HHHHhcCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccccCCHHHHHH-HHH--
Confidence 11122344455553 2222222111 21223333334466888888877553221 111111 111
Q ss_pred HHHHhccCCCcceEEEeCCC-HHHHHHHHHHhhcccCCeeeecCCCc
Q 015825 283 EEIKQGKSSGIFDHILYNDK-LEECYENLKKHLGLDGSIATNHQTSP 328 (399)
Q Consensus 283 ~~l~~~~~~~~~t~Viv~hd-leea~~~l~~ii~~~~~~~~~~~~~~ 328 (399)
+.... ....++++.+|. ++++-+.+++++ .+|++...+++.
T Consensus 139 --~~~~~-~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~ 180 (189)
T 2bdt_A 139 --FESKG-IDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGD 180 (189)
T ss_dssp --HHHTT-CCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC----
T ss_pred --HhhcC-CCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCC
Confidence 11111 112356677787 888888888887 777777777654
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.69 E-value=8.4e-11 Score=111.70 Aligned_cols=70 Identities=23% Similarity=0.335 Sum_probs=39.4
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC-ccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA-PRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNL 209 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~-~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~ 209 (399)
.++|+||||||||||+|+|+|...+..| .+...... ........++|+||+..+++.+ ++.++..|....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G-~i~~~g~~i~~~~~~~~i~~v~q~~~~~~~l----tv~d~~~~g~~~ 74 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKA-SSWNREEKIPKTVEIKAIGHVIEEGGVKMKL----TVIDTPGFGDQI 74 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC-------------CCCCCSCCEEEESCC----CCEE----EEECCCC--CCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCC-ccccCCcccCcceeeeeeEEEeecCCCcCCc----eEEechhhhhhc
Confidence 5799999999999999999999988877 44322111 1112234589999987766555 777776665443
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.66 E-value=9.7e-10 Score=103.82 Aligned_cols=36 Identities=22% Similarity=0.333 Sum_probs=31.2
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCc-ccceee
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSM-FGFSVS 166 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~-~g~~i~ 166 (399)
..+|++++|+||||||||||+++|++++++. .| .+.
T Consensus 22 i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G-~I~ 58 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSY-HII 58 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCC-EEE
T ss_pred hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCC-EEE
Confidence 3589999999999999999999999998876 67 443
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1.8e-09 Score=105.36 Aligned_cols=36 Identities=31% Similarity=0.435 Sum_probs=32.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeee
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSH 167 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ 167 (399)
.+|+.++|+||||||||||+++|++++++..| .+..
T Consensus 169 ~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g-~i~i 204 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEER-IISI 204 (330)
T ss_dssp HHTCCEEEEESTTSCHHHHHHHGGGGSCTTSC-EEEE
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCcCCCc-EEEE
Confidence 47899999999999999999999999998877 5543
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=98.64 E-value=6.9e-10 Score=109.84 Aligned_cols=62 Identities=15% Similarity=0.150 Sum_probs=51.3
Q ss_pred cCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeee
Q 015825 252 CPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIAT 322 (399)
Q Consensus 252 ~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~ 322 (399)
.+|++++||||++++|+.+.+.+.+.+.++.. ...++++++|+++. ...+++++.+.+|.++
T Consensus 302 ~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~--------~g~tvi~itH~~~~-~~~~d~~~~l~~G~i~ 363 (365)
T 3qf7_A 302 GRLDAFFIDEGFSSLDTENKEKIASVLKELER--------LNKVIVFITHDREF-SEAFDRKLRITGGVVV 363 (365)
T ss_dssp TTCCEEEEESCCTTSCHHHHHHHHHHHHGGGG--------SSSEEEEEESCHHH-HTTCSCEEEEETTEEC
T ss_pred CCCCEEEEeCCCccCCHHHHHHHHHHHHHHHh--------CCCEEEEEecchHH-HHhCCEEEEEECCEEE
Confidence 68999999999999999998888888877532 23489999999987 5678888888888664
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=98.63 E-value=4.7e-07 Score=79.12 Aligned_cols=158 Identities=15% Similarity=0.149 Sum_probs=79.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc--cccCCeeEEecChHHHHHHHhhhhhHHHHHHhcc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA--MEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGN 208 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~--~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~ 208 (399)
.+|++++|+|||||||||+++.|++.+ |............ ......++.+++...++.+ +..+.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~------ 71 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWL----QALND------ 71 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCCHHHHHHHHTTCCCCHHHHHHHH----HHHHH------
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccchHHHHHhhcCcCCCccccccHH----HHHHH------
Confidence 468999999999999999999999864 3222221111000 0000123444432222211 11111
Q ss_pred ccCCcHHHHHHHHHcCCceEEecc---hhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC--cHHHHHHHHHHHHH
Q 015825 209 LYGTSVEAVEAVADAGKRCILDID---VQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE--TEDQILKRLRNAKE 283 (399)
Q Consensus 209 ~~g~~~~~i~~~~~~g~~~vldld---~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~--~~e~i~~~L~~~~~ 283 (399)
.+...+..+..++++.. ......++........+++.. +.+++.+|+..|+.. .+..+...+.
T Consensus 72 -------~~~~~~~~~~~~vi~~~~~~~~~~~~l~~~~~~~~vv~l~~-~~e~~~~R~~~R~~~~~~~~~~~~~~~---- 139 (175)
T 1knq_A 72 -------AAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKG-DFDVIESRLKARKGHFFKTQMLVTQFE---- 139 (175)
T ss_dssp -------HHHHHHHHCSEEEEECCCCSHHHHHHHHTTCTTEEEEEEEC-CHHHHHHHHHTSTTCCCCHHHHHHHHH----
T ss_pred -------HHHHHHhcCCcEEEEeCchHHHHHHHHHhcCCCEEEEEEEC-CHHHHHHHHHhccCCCCchHHHHHHHH----
Confidence 12222334556666642 222233443333334555554 478999999988633 2333322221
Q ss_pred HHHhccCCCcceEEEeCC-CHHHHHHHHHHhh
Q 015825 284 EIKQGKSSGIFDHILYND-KLEECYENLKKHL 314 (399)
Q Consensus 284 ~l~~~~~~~~~t~Viv~h-dleea~~~l~~ii 314 (399)
.+....+....+++|.++ +++++.+.+.+.+
T Consensus 140 ~~~~~~~~~~~~~~Id~~~~~~~~~~~i~~~l 171 (175)
T 1knq_A 140 TLQEPGADETDVLVVDIDQPLEGVVASTIEVI 171 (175)
T ss_dssp HCCCCCTTCTTEEEEECSSCHHHHHHHHHHHH
T ss_pred hhhCcccCCCCeEEEeCCCCHHHHHHHHHHHH
Confidence 111110123356777655 8888888877655
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=98.60 E-value=1.4e-08 Score=88.64 Aligned_cols=68 Identities=16% Similarity=0.088 Sum_probs=47.1
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-cccccCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-RAMEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
...+|++++|+||||||||||+++|+|.+ +..| .+...+... ...... .|+||+..+| .+ ++.+++.+
T Consensus 29 ~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G-~V~~~g~~i~~~~~~~--~~~~q~~~l~-~l----tv~e~l~~ 97 (158)
T 1htw_A 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQG-NVKSPTYTLVEEYNIA--GKMIYHFDLY-RL----ADPEELEF 97 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCS-CCCCCTTTCEEEEEET--TEEEEEEECT-TC----SCTTHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCC-eEEECCEeeeeeccCC--Ccceeccccc-cC----CcHHHHHH
Confidence 34689999999999999999999999999 7778 454333222 111112 2788887777 54 55555543
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=98.58 E-value=9.8e-10 Score=98.83 Aligned_cols=51 Identities=27% Similarity=0.380 Sum_probs=36.0
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecC---CCccccccCCeeEEecCh
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTT---RAPRAMEKDGVHYHFTER 187 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~tt---r~~~~~~~~~i~yvfq~~ 187 (399)
|++++|+||||||||||+++|++.++ ..| +...+ .... .....++|++|+.
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G--i~~~g~~~~~~~-~~~~~ig~~~~~~ 54 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG--VPVDGFYTEEVR-QGGRRIGFDVVTL 54 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT--CCCEEEECCEEE-TTSSEEEEEEEET
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC--EEEcCEecchhH-hhhceEEEEEEec
Confidence 67899999999999999999999987 666 32211 1111 1133478998874
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=98.57 E-value=2.5e-09 Score=105.45 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=28.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
.+|.+++|+||||||||||+++|++.+++..+
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~ 152 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKY 152 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHHHHCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcccCCCC
Confidence 36779999999999999999999999887533
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=1.4e-08 Score=92.50 Aligned_cols=29 Identities=21% Similarity=0.186 Sum_probs=26.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
.+|++++|+||||||||||+++|++...+
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~~~ 51 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMVQL 51 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 48999999999999999999999996544
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=2.4e-08 Score=98.09 Aligned_cols=174 Identities=17% Similarity=0.108 Sum_probs=95.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc-----------cccCCeeEEecChH-HHHHHHhhhh
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA-----------MEKDGVHYHFTERS-VMEKAIKDGK 198 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~-----------~~~~~i~yvfq~~~-lf~~~~~~~~ 198 (399)
.+|++++|+||||||||||+++|+++..+..| .+.......+. ...+.+.++++... ...+. .
T Consensus 69 ~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g-~i~~~G~~~~ev~~~i~~~~~~~~~~~v~~~~~~~~~~~~r~----~ 143 (347)
T 2obl_A 69 GIGQRIGIFAGSGVGKSTLLGMICNGASADII-VLALIGERGREVNEFLALLPQSTLSKCVLVVTTSDRPALERM----K 143 (347)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHSCCSEE-EEEEESCCHHHHHHHHTTSCHHHHTTEEEEEECTTSCHHHHH----H
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCCCCEE-EEEEecccHHHHHHHHHhhhhhhhhceEEEEECCCCCHHHHH----H
Confidence 48999999999999999999999999988776 43322111000 01122455555421 11111 1
Q ss_pred hHHHHHHhccccCCcHHHHHHHHHcCCceEEecc-hhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHH
Q 015825 199 FLEFASVHGNLYGTSVEAVEAVADAGKRCILDID-VQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKR 277 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~i~~~~~~g~~~vldld-~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~ 277 (399)
..........++ ...+..+++-++ +..+.... ++...+ +.+|+. +.++|+.....+.+.
T Consensus 144 ~~~~~~~~ae~~----------~~~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~------t~Gldp~~~~~l~~l 203 (347)
T 2obl_A 144 AAFTATTIAEYF----------RDQGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV------RGGFPPSVFSSLPKL 203 (347)
T ss_dssp HHHHHHHHHHHH----------HTTTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC------BTTBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----------HhccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc------ccCCCHHHHHHHHHH
Confidence 111110000000 012333322222 21111111 112211 456655 778998777777776
Q ss_pred HHHHHHHHHhccCCCcc-----eEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcch
Q 015825 278 LRNAKEEIKQGKSSGIF-----DHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADH 337 (399)
Q Consensus 278 L~~~~~~l~~~~~~~~~-----t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~ 337 (399)
++++.. . .+.. ++++.+||++ ...+++++.+.+|.++..+++.+....|...
T Consensus 204 ler~~~----~--~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl~~~l~~~~~~Paid 260 (347)
T 2obl_A 204 LERAGP----A--PKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVLTRELAEENHFPAID 260 (347)
T ss_dssp HTTCEE----C--SSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEBCHHHHTTTCSSCBC
T ss_pred HHHHhC----C--CCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEEeCCHHHcCCCCCcC
Confidence 665421 0 1122 6778999988 3468999999999999887777666666543
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=8.1e-10 Score=105.60 Aligned_cols=33 Identities=21% Similarity=0.410 Sum_probs=29.5
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
..+|++++|+||||||||||++.|++...+..|
T Consensus 32 l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G 64 (296)
T 1cr0_A 32 ARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMG 64 (296)
T ss_dssp BCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSC
T ss_pred CCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcC
Confidence 458999999999999999999999999876655
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=98.51 E-value=1.3e-08 Score=99.22 Aligned_cols=70 Identities=20% Similarity=0.064 Sum_probs=48.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeec----CCCcc------ccccCCeeEEecChHHHHHHHhhhhhH
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHT----TRAPR------AMEKDGVHYHFTERSVMEKAIKDGKFL 200 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~t----tr~~~------~~~~~~i~yvfq~~~lf~~~~~~~~~~ 200 (399)
.+|++++|+|||||||||++++|++.+.+..| .+... .+... .....++.|++|....++.+ ++.
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g-~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~----~v~ 201 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWLKNHGF-SVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAA----VAY 201 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHHHHTTC-CEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHH----HHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCC-EEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHH----HHH
Confidence 47899999999999999999999999988777 44432 12110 02234567888887777665 555
Q ss_pred HHHHH
Q 015825 201 EFASV 205 (399)
Q Consensus 201 E~~~~ 205 (399)
+++.+
T Consensus 202 e~l~~ 206 (328)
T 3e70_C 202 DAIQH 206 (328)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55543
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=3.8e-09 Score=109.31 Aligned_cols=150 Identities=15% Similarity=0.091 Sum_probs=88.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~ 210 (399)
.+|++++|+||||||||||++.+++...+. |..+ +.|.|++... ++...... +
T Consensus 279 ~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~~v--------------i~~~~ee~~~--------~l~~~~~~----~ 331 (525)
T 1tf7_A 279 FKDSIILATGATGTGKTLLVSRFVENACAN-KERA--------------ILFAYEESRA--------QLLRNAYS----W 331 (525)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TCCE--------------EEEESSSCHH--------HHHHHHHT----T
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CCCE--------------EEEEEeCCHH--------HHHHHHHH----c
Confidence 489999999999999999999999987652 4211 3345665321 11111111 2
Q ss_pred CCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC-----cHHHHHHHHHHHHHHH
Q 015825 211 GTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE-----TEDQILKRLRNAKEEI 285 (399)
Q Consensus 211 g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~-----~~e~i~~~L~~~~~~l 285 (399)
+..... ....+...+.+..+..+..-..++.....++...|+++++| |++++|.. .++.+.+.++.+++
T Consensus 332 g~~~~~---~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~~i~~ll~~l~~-- 405 (525)
T 1tf7_A 332 GMDFEE---MERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQFVIGVTGYAKQ-- 405 (525)
T ss_dssp SCCHHH---HHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHHHHHHHHHHHHH--
T ss_pred CCCHHH---HHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHHHHHHHHHHHHh--
Confidence 222222 22334444444433222111222222333566789999999 99999988 66666666665542
Q ss_pred HhccCCCcceEEEeCCCH----------HHHHHHHHHhhcccCC
Q 015825 286 KQGKSSGIFDHILYNDKL----------EECYENLKKHLGLDGS 319 (399)
Q Consensus 286 ~~~~~~~~~t~Viv~hdl----------eea~~~l~~ii~~~~~ 319 (399)
...++++++|+. ..+...+++++.+..+
T Consensus 406 ------~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~g 443 (525)
T 1tf7_A 406 ------EEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYV 443 (525)
T ss_dssp ------TTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEE
T ss_pred ------CCCEEEEEECcccccCcccccCcccceeeeEEEEEEEE
Confidence 135888999987 4444556777766554
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.2e-06 Score=78.46 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++..++|+||+||||||+.+.|+..+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998755
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=98.48 E-value=2.6e-07 Score=88.24 Aligned_cols=152 Identities=17% Similarity=0.296 Sum_probs=81.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeee-cCCCccccccCCeeEEecChHHHHHHHhhhhhHHHH-HHhcc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSH-TTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFA-SVHGN 208 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~-ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~-~~~~~ 208 (399)
..+..++|+|||||||||+.+.|...++. ....++. +.+..... |..+.. .+.++. .+.+.
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~~-~~~~Is~D~~R~~~~~--------------~~~~~~--~~~~~a~~~~~~ 93 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQG-NVIVIDNDTFKQQHPN--------------FDELVK--LYEKDVVKHVTP 93 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTTT-CCEEECTHHHHTTSTT--------------HHHHHH--HHGGGCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC-CeEEEechHhHHhchh--------------hHHHHH--HccchhhhhhhH
Confidence 35789999999999999999999876531 1112222 22211110 111111 122221 12223
Q ss_pred ccCC-cHHHHHHHHHcCCceEEecchhhHH---HH----HcCCcc-eeEEEEcCCChHHH--HHHHH---------hCCC
Q 015825 209 LYGT-SVEAVEAVADAGKRCILDIDVQGAR---SV----RASPLD-AIFIFICPPSMEEL--EERLR---------ARGT 268 (399)
Q Consensus 209 ~~g~-~~~~i~~~~~~g~~~vldld~~g~~---~l----~~~~~~-~~~ili~~P~lllL--DEpl~---------~lD~ 268 (399)
.++. ....+...+..+..+++|.+..+.. .+ +..... .+++|.++|++..+ .+|+. ++..
T Consensus 94 ~~~~~~~~~v~~~l~~g~~vIld~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~p~~~~~l~~~~Rl~~R~~~g~l~~R~~ 173 (287)
T 1gvn_B 94 YSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARAT 173 (287)
T ss_dssp HHHHHHHHHHHHHHHHTCCEEECCCCCCSHHHHHHHHHHHTTTCEEEEEEECCCHHHHHHHHHHHHHHHHHHCTTTCCCC
T ss_pred HHHHHHHHHHHHHHhcCCeEEEECCCCCHHHHHHHHHHHHhCCCcEEEEEEECCHHHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 3333 2344555667788899997665533 22 222222 34556666655443 77763 3433
Q ss_pred --CcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCC
Q 015825 269 --ETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDK 302 (399)
Q Consensus 269 --~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hd 302 (399)
+..+.+.+++.....++.. ...+|.++++++
T Consensus 174 ~~e~~~~i~~rl~~a~~el~~---~~~~d~v~v~d~ 206 (287)
T 1gvn_B 174 PKQAHDIVVKNLPTNLETLHK---TGLFSDIRLYNR 206 (287)
T ss_dssp CHHHHHHHHHHHHHHHHHHHH---HTCCSCEEEECT
T ss_pred CHHHHHHHHHHHHHHHHHHHc---CCCCCeEEEEeC
Confidence 3456667777766655543 246688877765
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=98.47 E-value=1.7e-06 Score=79.83 Aligned_cols=171 Identities=20% Similarity=0.247 Sum_probs=84.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhh----hHHHHHHh
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGK----FLEFASVH 206 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~----~~E~~~~~ 206 (399)
.+|.+++|.||+||||||+++.|...+.. |..+.. ++.+...+ . ...+..++..+. ..+...+.
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~--~~~~~~-~~~p~~~~---~------g~~i~~~~~~~~~~~~~~~~ll~~ 91 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVK--DYDVIM-TREPGGVP---T------GEEIRKIVLEGNDMDIRTEAMLFA 91 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTT--TSCEEE-ECTTTTCH---H------HHHHHHHTTC---CCHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhc--CCCcee-ecCCCCCc---h------HHHHHHHHhCCCCCCHHHHHHHHH
Confidence 47899999999999999999999998876 434433 33222111 0 011111111111 00101111
Q ss_pred ccccCCcHHHHHHHHHcCCceEEe----------c-----chhhHHHH---HcCCcce-eEEEEcCCChHHHHHHHHhCC
Q 015825 207 GNLYGTSVEAVEAVADAGKRCILD----------I-----DVQGARSV---RASPLDA-IFIFICPPSMEELEERLRARG 267 (399)
Q Consensus 207 ~~~~g~~~~~i~~~~~~g~~~vld----------l-----d~~g~~~l---~~~~~~~-~~ili~~P~lllLDEpl~~lD 267 (399)
...+....+.+...+..+..+++| . +......+ ....+.+ +++++.- +.+++-+|+..|+
T Consensus 92 a~r~~~~~~~i~~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~-~~e~~~~R~~~R~ 170 (229)
T 4eaq_A 92 ASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNV-SAEVGRERIIKNS 170 (229)
T ss_dssp HHHHHHCCCCCHHHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEEC-CHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeC-CHHHHHHHHHhcC
Confidence 110000001123344567777877 2 22211122 1122222 2333333 3588889998773
Q ss_pred ----CC--cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhc
Q 015825 268 ----TE--TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 268 ----~~--~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~ 315 (399)
.. ....++++++....++...+ ...+.+|-.+.+++++.+.+.+++.
T Consensus 171 ~~~dr~e~~~~~~~~rv~~~y~~l~~~~-~~~~~vIDa~~s~eev~~~I~~~l~ 223 (229)
T 4eaq_A 171 RDQNRLDQEDLKFHEKVIEGYQEIIHNE-SQRFKSVNADQPLENVVEDTYQTII 223 (229)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHTTTC-TTTEEEEETTSCHHHHHHHHHHHHH
T ss_pred CCccchhhhhHHHHHHHHHHHHHHHHhC-CCCEEEEeCCCCHHHHHHHHHHHHH
Confidence 21 24566777776655543321 2223334445589999888877553
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=1.1e-06 Score=81.60 Aligned_cols=31 Identities=16% Similarity=0.157 Sum_probs=25.4
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++...+|.+++|+||||||||||+++|++.+
T Consensus 19 sl~i~~g~iigI~G~~GsGKSTl~k~L~~~l 49 (245)
T 2jeo_A 19 YFQSMRPFLIGVSGGTASGKSTVCEKIMELL 49 (245)
T ss_dssp ----CCSEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eccCCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3445689999999999999999999999976
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=98.43 E-value=5.8e-06 Score=75.68 Aligned_cols=161 Identities=19% Similarity=0.315 Sum_probs=87.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhh-----hHHHHHH
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGK-----FLEFASV 205 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~-----~~E~~~~ 205 (399)
.+.+++.|+||+||||+|+.+.|+..+. +.|.. ..+++...+..++ +.++..
T Consensus 27 ~k~kiI~llGpPGsGKgTqa~~L~~~~g------~~hIs----------------tGdllR~~i~~~t~lg~~~~~~~~- 83 (217)
T 3umf_A 27 AKAKVIFVLGGPGSGKGTQCEKLVQKFH------FNHLS----------------SGDLLRAEVQSGSPKGKELKAMME- 83 (217)
T ss_dssp TSCEEEEEECCTTCCHHHHHHHHHHHHC------CEEEC----------------HHHHHHHHHTTCCHHHHHHHHHHH-
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHC------CceEc----------------HHHHHHHHHHcCCchHHHHHHHHh-
Confidence 4678999999999999999999998652 22211 0111111111110 111111
Q ss_pred hccccCCcHHH----HHHHH----HcCCceEEecchhhHHH---HHcCCcceeEEEEcCCChHHHHHHHHhCC------C
Q 015825 206 HGNLYGTSVEA----VEAVA----DAGKRCILDIDVQGARS---VRASPLDAIFIFICPPSMEELEERLRARG------T 268 (399)
Q Consensus 206 ~~~~~g~~~~~----i~~~~----~~g~~~vldld~~g~~~---l~~~~~~~~~ili~~P~lllLDEpl~~lD------~ 268 (399)
.+.+ .+.+. +.+.+ .....+++|..|....+ +.......-.++..+.+.+++-+|+.+|. .
T Consensus 84 ~G~l--Vpde~~~~lv~~~l~~~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R~D 161 (217)
T 3umf_A 84 RGEL--VPLEVVLALLKEAMIKLVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAETSNRVD 161 (217)
T ss_dssp HTCC--CCHHHHHHHHHHHHHHHTTTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC------CH
T ss_pred cCCC--CCHHHHHHHHHHHHhhccccccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccccCCCCC
Confidence 1111 12221 11211 12345788875544333 32222222233333344788889987663 4
Q ss_pred CcHHHHHHHHHHHHHH----HHhccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 269 ETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 269 ~~~e~i~~~L~~~~~~----l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
++++.+++|+..++++ +++|+..+.+..|-.+.+++++++.+..++..
T Consensus 162 D~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~eeV~~~I~~~l~k 213 (217)
T 3umf_A 162 DNEETIVKRFRTFNELTKPVIEHYKQQNKVITIDASGTVDAIFDKVNHELQK 213 (217)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHH
Confidence 5778899999998876 34444334444445566999999999887654
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=7.1e-06 Score=74.43 Aligned_cols=155 Identities=27% Similarity=0.372 Sum_probs=86.1
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhh-----HHHHHHhccc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKF-----LEFASVHGNL 209 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~-----~E~~~~~~~~ 209 (399)
+++|+||+||||+|+.+.|+..+ | +.|. +..+++...+..++- .++.. .+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~----g--~~~i----------------stGdllR~~i~~~t~lg~~~~~~~~-~G~l 58 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK----G--FVHI----------------STGDILREAVQKGTPLGKKAKEYME-RGEL 58 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH----C--CEEE----------------EHHHHHHHHHHHTCHHHHHHHHHHH-HTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHH----C--CeEE----------------cHHHHHHHHHHhcChhhhhHHHHHh-cCCc
Confidence 57899999999999999999865 2 2221 111222221111111 01111 1111
Q ss_pred cCCcHHHHHH----HHHcCCceEEecchhhHHHH-------HcCCcce-eEEEEcCCChHHHHHHHHhC-----------
Q 015825 210 YGTSVEAVEA----VADAGKRCILDIDVQGARSV-------RASPLDA-IFIFICPPSMEELEERLRAR----------- 266 (399)
Q Consensus 210 ~g~~~~~i~~----~~~~g~~~vldld~~g~~~l-------~~~~~~~-~~ili~~P~lllLDEpl~~l----------- 266 (399)
.+.+.+.. .+.....+++|..|....+. ....... .++++. .+.+++-+|+.+|
T Consensus 59 --vpd~iv~~lv~~~l~~~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~-v~~e~l~~Rl~~R~~~~~~g~~y~ 135 (206)
T 3sr0_A 59 --VPDDLIIALIEEVFPKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFE-VPDEVVIERLSGRRINPETGEVYH 135 (206)
T ss_dssp --CCHHHHHHHHHHHCCSSSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEE-CCHHHHHHHHHTEEECTTTCCEEE
T ss_pred --CCHHHHHHHHHHhhccCCceEecCCchhHHHHHHHHhhHHHhccccceeeecC-CCHHHHHHHHhCCccccCCCceee
Confidence 23332222 22333457788655433322 1222222 233333 3467888899875
Q ss_pred ---------------CCCcHHHHHHHHHHHHHH----HHhccCCCcceEEEeCCCHHHHHHHHHHhhc
Q 015825 267 ---------------GTETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 267 ---------------D~~~~e~i~~~L~~~~~~----l~~~~~~~~~t~Viv~hdleea~~~l~~ii~ 315 (399)
..++++.+++|+..++++ +++|+..+.+..|-.+.+++++++.+..++.
T Consensus 136 ~~~~pp~~g~~l~~r~DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~~~~eV~~~I~~~l~ 203 (206)
T 3sr0_A 136 VKYNPPPPGVKVIQREDDKPEVIKKRLEVYREQTAPLIEYYKKKGILRIIDASKPVEEVYRQVLEVIG 203 (206)
T ss_dssp TTTBCCCTTCCCBCCGGGSHHHHHHHHHHHHHHTTHHHHHHHTTTCEEEEETTSCHHHHHHHHHHHHC
T ss_pred eeccCCCCCceecccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHc
Confidence 356889999999999876 3444434444445556699999999888764
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.42 E-value=1.5e-06 Score=77.83 Aligned_cols=27 Identities=30% Similarity=0.420 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+++.++|+||+||||||+.+.|++.+
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999999865
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=98.41 E-value=9.6e-07 Score=79.11 Aligned_cols=155 Identities=13% Similarity=0.094 Sum_probs=76.6
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--ccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcccc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~ 210 (399)
..+++|+|++||||||+++.|++.+.. .......-.. .......++.|+.......+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~----~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~~~----------------- 76 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGY----PFIEGDALHPPENIRKMSEGIPLTDDDRWPWL----------------- 76 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTC----CEEEGGGGCCHHHHHHHHHTCCCCHHHHHHHH-----------------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCC----EEEeCCcCcchhhHHHHhcCCCCCchhhHHHH-----------------
Confidence 568999999999999999999886521 2211110000 00000012222221111110
Q ss_pred CCcHHHHHHHHHcCCceEEecc---hhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCC--CcHHHHHHHHHHHHHHH
Q 015825 211 GTSVEAVEAVADAGKRCILDID---VQGARSVRASPLDAIFIFICPPSMEELEERLRARGT--ETEDQILKRLRNAKEEI 285 (399)
Q Consensus 211 g~~~~~i~~~~~~g~~~vldld---~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~--~~~e~i~~~L~~~~~~l 285 (399)
..+...+..+..+++|.. ......+......+..++..+++.+++-+|+..|+. ...+.+.+.+.. .
T Consensus 77 ----~~l~~~~~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~~~~~~~~~~~~~~----~ 148 (202)
T 3t61_A 77 ----AAIGERLASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGHFMPSSLLQTQLET----L 148 (202)
T ss_dssp ----HHHHHHHTSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSSCCCHHHHHHHHHH----C
T ss_pred ----HHHHHHHhcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhccCCCHHHHHHHHHh----c
Confidence 112222244566677742 333344444333323344444558899999987753 232333222222 1
Q ss_pred HhccCCCcceEEEeC-CCHHHHHHHHHHhhccc
Q 015825 286 KQGKSSGIFDHILYN-DKLEECYENLKKHLGLD 317 (399)
Q Consensus 286 ~~~~~~~~~t~Viv~-hdleea~~~l~~ii~~~ 317 (399)
... .....+++|.+ .+++++.+.+.+++...
T Consensus 149 ~~~-~~~~~~~~Id~~~~~~e~~~~I~~~l~~~ 180 (202)
T 3t61_A 149 EDP-RGEVRTVAVDVAQPLAEIVREALAGLARL 180 (202)
T ss_dssp CCC-TTSTTEEEEESSSCHHHHHHHHHHHHHHH
T ss_pred CCC-CCCCCeEEEeCCCCHHHHHHHHHHHHHHh
Confidence 111 11223555544 48999988887766543
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=5.6e-09 Score=114.45 Aligned_cols=69 Identities=10% Similarity=-0.135 Sum_probs=48.5
Q ss_pred EcCCChHHHHHHHHhCCCCcHHHH-HHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCC
Q 015825 251 ICPPSMEELEERLRARGTETEDQI-LKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTS 327 (399)
Q Consensus 251 i~~P~lllLDEpl~~lD~~~~e~i-~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~ 327 (399)
+.+|++.+||||++++|+.....+ +..++.+.++ ..++++++||+.+.+ ..++++..+.++.+...+++
T Consensus 739 a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~-------~g~~vl~aTH~~el~-~lad~~~~v~ng~v~~~~~~ 808 (934)
T 3thx_A 739 ATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATK-------IGAFCMFATHFHELT-ALANQIPTVNNLHVTALTTE 808 (934)
T ss_dssp CCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHT-------TCCEEEEEESCGGGG-GGGGTCTTEEEEEEEEEEET
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhc-------CCCEEEEEcCcHHHH-HHhcccceeEeeEEEEEecC
Confidence 468899999999999998777676 4444544321 245889999996544 56777777777766654433
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=98.38 E-value=1.2e-05 Score=69.03 Aligned_cols=91 Identities=14% Similarity=0.141 Sum_probs=51.5
Q ss_pred HcCCceEEec--chhhHHHHHcCCcce-eEEEEcCCChHHHHHHHHhCCC----CcHHHHHHHHHHHHH-HHHhccCCCc
Q 015825 222 DAGKRCILDI--DVQGARSVRASPLDA-IFIFICPPSMEELEERLRARGT----ETEDQILKRLRNAKE-EIKQGKSSGI 293 (399)
Q Consensus 222 ~~g~~~vldl--d~~g~~~l~~~~~~~-~~ili~~P~lllLDEpl~~lD~----~~~e~i~~~L~~~~~-~l~~~~~~~~ 293 (399)
..+..+++|. .+.....++.....+ ..+++. .+.+++.+|+..|+. .+.+.+.+++..... ....+ ...
T Consensus 76 ~~~~~vi~dg~~~~~~~~~l~~~~~~~~~~i~l~-~~~~~~~~R~~~R~~~~~~~~~~~~~~r~~~~~~~~~~~~--~~~ 152 (179)
T 3lw7_A 76 SNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVH-SPPKIRYKRMIERLRSDDSKEISELIRRDREELKLGIGEV--IAM 152 (179)
T ss_dssp CCCSCEEEECCCCHHHHHHHHHHHCSCEEEEEEE-CCHHHHHHHHHTCC----CCCHHHHHHHHHHHHHHTHHHH--HHT
T ss_pred cCCCeEEEeCCCCHHHHHHHHHHhCCCcEEEEEE-CCHHHHHHHHHhccCCCCcchHHHHHHHHHhhhccChHhH--HHh
Confidence 3455667764 222233333222223 344444 457999999998875 567777777643211 11111 124
Q ss_pred ceEEEeCC-CHHHHHHHHHHhhc
Q 015825 294 FDHILYND-KLEECYENLKKHLG 315 (399)
Q Consensus 294 ~t~Viv~h-dleea~~~l~~ii~ 315 (399)
+++++.|+ +++++.+.+.+++.
T Consensus 153 ad~vId~~~~~~~~~~~i~~~l~ 175 (179)
T 3lw7_A 153 ADYIITNDSNYEEFKRRCEEVTD 175 (179)
T ss_dssp CSEEEECCSCHHHHHHHHHHHHH
T ss_pred CCEEEECCCCHHHHHHHHHHHHH
Confidence 57887776 89999888877654
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=6.9e-09 Score=100.04 Aligned_cols=32 Identities=22% Similarity=0.226 Sum_probs=28.8
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
....+|++++|+||||||||||+++|+|++ .|
T Consensus 121 l~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G 152 (305)
T 2v9p_A 121 KGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GG 152 (305)
T ss_dssp HTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TC
T ss_pred EEecCCCEEEEECCCCCcHHHHHHHHhhhc---Cc
Confidence 345699999999999999999999999998 56
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=1.9e-08 Score=108.86 Aligned_cols=63 Identities=13% Similarity=-0.036 Sum_probs=43.1
Q ss_pred EcCCChHHHHHHHHhCCCCcHHHH-HHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCee
Q 015825 251 ICPPSMEELEERLRARGTETEDQI-LKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIA 321 (399)
Q Consensus 251 i~~P~lllLDEpl~~lD~~~~e~i-~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~ 321 (399)
+.+|++.+||||+++.|+.....+ +..++.+.++ ..++++++||+.+.+ ..++++.....+.+
T Consensus 684 a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~-------~g~~vl~~TH~~el~-~l~d~~~~v~n~~~ 747 (800)
T 1wb9_A 684 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANK-------IKALTLFATHYFELT-QLPEKMEGVANVHL 747 (800)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHT-------TCCEEEEECSCGGGG-GHHHHSTTEEEEEE
T ss_pred ccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhc-------cCCeEEEEeCCHHHH-HHhhhhhceEEEEE
Confidence 678999999999999998877665 4555554321 245889999998654 36666544444433
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=2.2e-05 Score=70.75 Aligned_cols=49 Identities=20% Similarity=0.356 Sum_probs=31.5
Q ss_pred CCCcHHHHHHHHHHHHHHHH----hccCCCcceEEEeCCCHHHHHHHHHHhhc
Q 015825 267 GTETEDQILKRLRNAKEEIK----QGKSSGIFDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 267 D~~~~e~i~~~L~~~~~~l~----~~~~~~~~t~Viv~hdleea~~~l~~ii~ 315 (399)
+.++++.+++++..+..+.. .+...+.+..|-.+.+++++...+..++.
T Consensus 161 ~~d~~e~i~~rl~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~v~~~i~~~l~ 213 (216)
T 3dl0_A 161 ADDNEETVTKRLEVNMKQTAPLLDFYDEKGYLVNVNGQQDIQDVYADLKVLLG 213 (216)
T ss_dssp TTCSHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHG
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence 56788999999988776532 22111122233445699999998887664
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=1.1e-08 Score=105.85 Aligned_cols=57 Identities=12% Similarity=0.096 Sum_probs=39.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHhh--hhhccCCcccceeeecCCCccc---cccCCeeEEecChH
Q 015825 131 NVEKPVVITGPSGVGKGTLISM--LMKEFPSMFGFSVSHTTRAPRA---MEKDGVHYHFTERS 188 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~--L~~~~~~~~g~~i~~ttr~~~~---~~~~~i~yvfq~~~ 188 (399)
.+|++++|+||||||||||+++ +.|..++..| .+..+...... .....++|+||++.
T Consensus 37 ~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g-~i~v~g~~~~~~~~~~~~~~g~~~q~~~ 98 (525)
T 1tf7_A 37 PIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEP-GVFVTFEETPQDIIKNARSFGWDLAKLV 98 (525)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCC-EEEEESSSCHHHHHHHHGGGTCCHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCC-EEEEEEeCCHHHHHHHHHHcCCChHHhh
Confidence 5899999999999999999999 6798876666 55544333211 11234677777643
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=98.30 E-value=2.4e-08 Score=90.73 Aligned_cols=32 Identities=16% Similarity=0.062 Sum_probs=27.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
.+|++++|+||||||||||++.|++...+..+
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~ 52 (235)
T 2w0m_A 21 PQGFFIALTGEPGTGKTIFSLHFIAKGLRDGD 52 (235)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHHHHHHHHTC
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCC
Confidence 47999999999999999999999987654333
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=1.7e-06 Score=81.46 Aligned_cols=77 Identities=21% Similarity=0.221 Sum_probs=48.6
Q ss_pred CCceEEEEeCCCh---HHHHH---HHHHhCCeEEEeccC-cc-------CCCC--cEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 95 SSDDCLWFLEVDT---PYVRE---QKKVVGAEVVAWSKG-VI-------GNVE--KPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 95 ~~~~~i~~~k~D~---~~~~~---l~~~~g~~v~~~s~~-~~-------~~~g--~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
+.+.+|++||+|. +..+. ..+..|+++ .+|+. .. .+.. ..++++|.+|+|||||+|.|.+...
T Consensus 46 ~k~~iivlNK~DL~~~~~~~~~~~~~~~~g~~v-~iSa~~~~gi~~L~~~l~~~~~~v~~vG~~~vGKSslin~l~~~~~ 124 (262)
T 3cnl_A 46 RKETIILLNKVDIADEKTTKKWVEFFKKQGKRV-ITTHKGEPRKVLLKKLSFDRLARVLIVGVPNTGKSTIINKLKGKRA 124 (262)
T ss_dssp TSEEEEEEECGGGSCHHHHHHHHHHHHHTTCCE-EECCTTSCHHHHHHHHCCCTTCEEEEEESTTSSHHHHHHHHHTTCC
T ss_pred CCCcEEEEECccCCCHHHHHHHHHHHHHcCCeE-EEECCCCcCHHHHHHHHHHhhhheEEeCCCCCCHHHHHHHHhcccc
Confidence 7789999999993 22222 224568888 87765 22 1344 3899999999999999999998766
Q ss_pred CcccceeeecCCCcc
Q 015825 159 SMFGFSVSHTTRAPR 173 (399)
Q Consensus 159 ~~~g~~i~~ttr~~~ 173 (399)
...+ ..+++|+...
T Consensus 125 ~~~~-~~~g~T~~~~ 138 (262)
T 3cnl_A 125 SSVG-AQPGITKGIQ 138 (262)
T ss_dssp -----------CCSC
T ss_pred cccC-CCCCCccceE
Confidence 5555 5556665543
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.28 E-value=2.9e-09 Score=103.34 Aligned_cols=58 Identities=10% Similarity=0.064 Sum_probs=42.4
Q ss_pred cCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHh--hcccCC
Q 015825 252 CPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKH--LGLDGS 319 (399)
Q Consensus 252 ~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~i--i~~~~~ 319 (399)
.+|++++||||++++|+...+.+.+.++++. ...++++++|+. ++...++++ +.+.+|
T Consensus 240 ~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~---------~~~~vi~~tH~~-~~~~~~d~~~~v~~~~g 299 (322)
T 1e69_A 240 KPSPFYVLDEVDSPLDDYNAERFKRLLKENS---------KHTQFIVITHNK-IVMEAADLLHGVTMVNG 299 (322)
T ss_dssp SCCSEEEEESCCSSCCHHHHHHHHHHHHHHT---------TTSEEEEECCCT-TGGGGCSEEEEEEESSS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHHHHhc---------CCCeEEEEECCH-HHHhhCceEEEEEEeCC
Confidence 5788999999999999988888888877642 124788999985 455556653 444444
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=98.28 E-value=1.8e-06 Score=76.27 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=24.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.+|++++|+|||||||||++++|++.
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~ 32 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANL 32 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhc
Confidence 47899999999999999999999997
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=98.27 E-value=3e-05 Score=69.85 Aligned_cols=67 Identities=19% Similarity=0.305 Sum_probs=43.1
Q ss_pred EEEEcCCChHHHHHHHHhC---------------------------------CCCcHHHHHHHHHHHHHHHH----hccC
Q 015825 248 FIFICPPSMEELEERLRAR---------------------------------GTETEDQILKRLRNAKEEIK----QGKS 290 (399)
Q Consensus 248 ~ili~~P~lllLDEpl~~l---------------------------------D~~~~e~i~~~L~~~~~~l~----~~~~ 290 (399)
++++. .+.+++-+|+.+| +.++++.+++++..+..+.. .+..
T Consensus 110 vi~l~-~~~e~~~~Rl~~R~~~~~~g~~y~~~~~pp~~~~~~~~~~~~l~~r~~d~~e~i~~rl~~~~~~~~~~~~~~~~ 188 (216)
T 3fb4_A 110 VLNIK-VEQEELMKRLTGRWICKTCGATYHTIFNPPAVEGICDKDGGELYQRIDDKPETVKNRLDVNMKQTQPLLDFYSQ 188 (216)
T ss_dssp EEEEE-CCHHHHHHHHHSEEEETTTCCEEETTTBCCSSTTBCTTTCCBEECCGGGSHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEE-CCHHHHHHHHHcCCCCCccCCccccccCCCCcccccccccCccccCCCCCHHHHHHHHHHHHHhHHHHHHHHHc
Confidence 33433 3468899999988 45678899999988776532 1111
Q ss_pred CCcceEEEeCCCHHHHHHHHHHhhc
Q 015825 291 SGIFDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 291 ~~~~t~Viv~hdleea~~~l~~ii~ 315 (399)
.+.+..|-.+.+++++.+.+..++.
T Consensus 189 ~~~~~~id~~~~~~~v~~~i~~~l~ 213 (216)
T 3fb4_A 189 KGVLKDIDGQQDIKKVFVDINDLLG 213 (216)
T ss_dssp TTCEEEEECSSCHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCHHHHHHHHHHHHH
Confidence 2222233345589999998887654
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=98.27 E-value=1.7e-08 Score=111.76 Aligned_cols=61 Identities=8% Similarity=-0.087 Sum_probs=44.7
Q ss_pred EEEcCCChHHHHHHHHhCCCCcH-HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 249 IFICPPSMEELEERLRARGTETE-DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 249 ili~~P~lllLDEpl~~lD~~~~-e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
.++.+|++.+||||++++|+... ..+++.++.+.++ ..++++++||+.+.+...++++..+
T Consensus 864 ~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~-------~g~~vl~~TH~~el~~~~~d~~~v~ 925 (1022)
T 2o8b_B 864 MHATAHSLVLVDELGRGTATFDGTAIANAVVKELAET-------IKCRTLFSTHYHSLVEDYSQNVAVR 925 (1022)
T ss_dssp HHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHT-------SCCEEEEECCCHHHHHHTSSCSSEE
T ss_pred HhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhc-------CCCEEEEEeCCHHHHHHhCCcceee
Confidence 55778999999999999997663 3356666665422 2458899999998887666665554
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=98.26 E-value=4e-08 Score=96.55 Aligned_cols=31 Identities=23% Similarity=0.221 Sum_probs=27.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhcc--CCcc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEF--PSMF 161 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~--~~~~ 161 (399)
.+|+++.|+||||||||||++.|++.. ++..
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~ 161 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEE 161 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhc
Confidence 489999999999999999999999987 5444
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=2.8e-08 Score=106.90 Aligned_cols=30 Identities=30% Similarity=0.383 Sum_probs=26.4
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccC-Cccc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFP-SMFG 162 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~-~~~g 162 (399)
|++++|+|||||||||++++|++... +..|
T Consensus 576 g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G 606 (765)
T 1ewq_A 576 HELVLITGPNMAGKSTFLRQTALIALLAQVG 606 (765)
T ss_dssp SCEEEEESCSSSSHHHHHHHHHHHHHHHTTT
T ss_pred CcEEEEECCCCCChHHHHHHHHhhhhhcccC
Confidence 89999999999999999999999763 4455
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=98.23 E-value=1.2e-05 Score=74.53 Aligned_cols=171 Identities=19% Similarity=0.239 Sum_probs=85.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhh----h---hhHHHH
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKD----G---KFLEFA 203 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~----~---~~~E~~ 203 (399)
.+|.+++|.|++||||||+++.|...+.. .|..+..+++.+.... + ...+...+.. . ...+.+
T Consensus 25 ~~~~~i~~eG~~GsGKsT~~~~l~~~l~~-~~~~~~~~~rep~~t~---~------g~~ir~~l~~~~~~~~~~~~~e~l 94 (236)
T 3lv8_A 25 MNAKFIVIEGLEGAGKSTAIQVVVETLQQ-NGIDHITRTREPGGTL---L------AEKLRALVKEEHPGEELQDITELL 94 (236)
T ss_dssp -CCCEEEEEESTTSCHHHHHHHHHHHHHH-TTCCCEEEEESSCSSH---H------HHHHHHHHHSCCTTSCCCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh-cCCCeeeeecCCCCCH---H------HHHHHHHHhhCCCcccCCHHHHHH
Confidence 47899999999999999999999887653 3434234454432111 1 1122222210 0 011222
Q ss_pred HHhccccCCcHHHHHHHHHcCCceEEec------chhhH---------HHHH---c--CCcceeEEEEcCCChHHHHHHH
Q 015825 204 SVHGNLYGTSVEAVEAVADAGKRCILDI------DVQGA---------RSVR---A--SPLDAIFIFICPPSMEELEERL 263 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~g~~~vldl------d~~g~---------~~l~---~--~~~~~~~ili~~P~lllLDEpl 263 (399)
.|....+......+...++.|..+++|- ..++. ..+. . ..++.+ +++. .+.+++-+|+
T Consensus 95 Lf~A~R~~~~~~~I~paL~~g~~VI~DRy~~S~~AYq~~~rgl~~~~i~~l~~~~~~~~~PDlv-i~Ld-v~~e~~~~Ri 172 (236)
T 3lv8_A 95 LVYAARVQLVENVIKPALARGEWVVGDRHDMSSQAYQGGGRQIAPSTMQSLKQTALGDFKPDLT-LYLD-IDPKLGLERA 172 (236)
T ss_dssp HHHHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEE-EEEE-CCHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEEEEeeecchHHhhhhhccCCCHHHHHHHHHHHhcCCCCCEE-EEEe-CCHHHHHHHH
Confidence 2332222222344556677888888882 11111 1111 1 123333 3333 3358888888
Q ss_pred HhCCC---Cc--HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhc
Q 015825 264 RARGT---ET--EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 264 ~~lD~---~~--~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~ 315 (399)
..|+. .. ..+++++++....++.... . .+-+|-.+.+++++.+.+.+++.
T Consensus 173 ~~R~~~dr~E~~~~~~~~rv~~~y~~la~~~-~-~~~vIDa~~sieeV~~~I~~~l~ 227 (236)
T 3lv8_A 173 RGRGELDRIEKMDISFFERARERYLELANSD-D-SVVMIDAAQSIEQVTADIRRALQ 227 (236)
T ss_dssp ----CCCTTTTSCHHHHHHHHHHHHHHHHHC-T-TEEEEETTSCHHHHHHHHHHHHH
T ss_pred HhcCCcchhhhhHHHHHHHHHHHHHHHHHHC-C-CEEEEeCCCCHHHHHHHHHHHHH
Confidence 77642 11 2466677766554443311 1 23333445689998888776553
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=98.22 E-value=1.1e-07 Score=93.63 Aligned_cols=29 Identities=31% Similarity=0.416 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccCCcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFPSMF 161 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~~~~ 161 (399)
++.++|+||||||||||+++|+|++++..
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~~ 198 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTTS 198 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCEE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCCc
Confidence 89999999999999999999999998877
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=98.22 E-value=4.3e-08 Score=107.18 Aligned_cols=54 Identities=19% Similarity=0.058 Sum_probs=38.8
Q ss_pred EcCCChHHHHHHHHhCCCCcHHHHH-HHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHH
Q 015825 251 ICPPSMEELEERLRARGTETEDQIL-KRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKK 312 (399)
Q Consensus 251 i~~P~lllLDEpl~~lD~~~~e~i~-~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ 312 (399)
+.+|++++||||++++|+.....+. ..++.+.++ ..++++++||+.+.+ ..+++
T Consensus 750 a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~-------~g~tvl~vTH~~el~-~l~~~ 804 (918)
T 3thx_B 750 ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRD-------VKSLTLFVTHYPPVC-ELEKN 804 (918)
T ss_dssp CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHT-------TCCEEEEECSCGGGG-GHHHH
T ss_pred ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHh-------cCCeEEEEeCcHHHH-HHHhh
Confidence 4679999999999999998777776 444544321 246899999997554 34554
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=98.19 E-value=1.3e-05 Score=70.83 Aligned_cols=26 Identities=23% Similarity=0.525 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++.+++|+|++||||||+.+.|+..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 56899999999999999999998755
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=98.18 E-value=7.3e-07 Score=90.93 Aligned_cols=71 Identities=18% Similarity=0.209 Sum_probs=49.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeec-CCCcc---------ccccCCeeEEecChHHHHHHHhhhhh
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHT-TRAPR---------AMEKDGVHYHFTERSVMEKAIKDGKF 199 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~t-tr~~~---------~~~~~~i~yvfq~~~lf~~~~~~~~~ 199 (399)
..+|++++|+||||||||||+++|++++.+..| .+... ....+ ...+.+++|+||....++.+ ++
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G-~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~----tV 364 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQFEQQGK-SVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS----VI 364 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTC-CEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH----HH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHhhhcCC-eEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH----HH
Confidence 347999999999999999999999999887767 44432 11111 11234689999987655554 45
Q ss_pred HHHHHH
Q 015825 200 LEFASV 205 (399)
Q Consensus 200 ~E~~~~ 205 (399)
.+++.+
T Consensus 365 ~e~l~~ 370 (503)
T 2yhs_A 365 FDAIQA 370 (503)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555544
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=98.17 E-value=4.1e-06 Score=81.52 Aligned_cols=56 Identities=29% Similarity=0.347 Sum_probs=42.6
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCc--------ccceeeecCCCccccccCCeeEEecCh
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSM--------FGFSVSHTTRAPRAMEKDGVHYHFTER 187 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~--------~g~~i~~ttr~~~~~~~~~i~yvfq~~ 187 (399)
++++++|+||+|||||||...|+..++.. .-..+.++|+++...+..++.|+|.+.
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~qvYr~mdIgTakp~~eE~~gvphhlidi 102 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQVYKGLDITTNKISVPDRGGVPHHLLGE 102 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSSTTBSSCTTTTTCCCSGGGTTCCEESSSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccccccceeeecCCCCHHHHcCCCEeeccc
Confidence 45789999999999999999999877521 001223578888888888998887653
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=98.16 E-value=2e-06 Score=84.73 Aligned_cols=57 Identities=26% Similarity=0.390 Sum_probs=40.4
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeec-CCCcccc-ccCCeeEEe-cCh
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHT-TRAPRAM-EKDGVHYHF-TER 187 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~t-tr~~~~~-~~~~i~yvf-q~~ 187 (399)
..+|+.++|+||||||||||+++|++++++..| .+... ++..... ..+.++|++ |..
T Consensus 172 i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g-~I~ie~~~e~~~~~~~~~v~~v~~q~~ 231 (361)
T 2gza_A 172 VQLERVIVVAGETGSGKTTLMKALMQEIPFDQR-LITIEDVPELFLPDHPNHVHLFYPSEA 231 (361)
T ss_dssp HHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSC-EEEEESSSCCCCTTCSSEEEEECC---
T ss_pred HhcCCEEEEECCCCCCHHHHHHHHHhcCCCCce-EEEECCccccCccccCCEEEEeecCcc
Confidence 348999999999999999999999999999877 55443 2222211 234578888 553
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=98.16 E-value=8.1e-06 Score=75.24 Aligned_cols=171 Identities=18% Similarity=0.173 Sum_probs=87.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCc---ccceeeecCCCccccccCCeeEEecChHHHHHHHhhhh---hHHHHH
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSM---FGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGK---FLEFAS 204 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~---~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~---~~E~~~ 204 (399)
.+|.+++|.||+||||||+++.|...+... +|..+. +++.+...+ .| ..+...+..+. ..+...
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~-~~rep~~t~---~g------~~ir~~l~~~~~~~~~~~ll 92 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVV-VTREPGGTR---LG------ETLREILLNQPMDLETEALL 92 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEE-EEESSSSSH---HH------HHHHHHHHHSCCCHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhhccccceeee-eecCCCCCh---HH------HHHHHHHHcCCCCHHHHHHH
Confidence 478999999999999999999999877543 154443 444432111 11 12222222211 222233
Q ss_pred HhccccCCcHHHHHHHHHcCCceEEecch------h---------hHHHHH-----cCCcceeEEEEcCCChHHHHHHHH
Q 015825 205 VHGNLYGTSVEAVEAVADAGKRCILDIDV------Q---------GARSVR-----ASPLDAIFIFICPPSMEELEERLR 264 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~~~~~g~~~vldld~------~---------g~~~l~-----~~~~~~~~ili~~P~lllLDEpl~ 264 (399)
|....+......++..++.|..+++|--. + -...+. ...++.+..|-.+| +++-+|+.
T Consensus 93 f~a~R~~~~~~~i~p~l~~g~~VI~DRy~~S~~ayq~~~~gl~~~~~~~l~~~~~~~~~PDl~I~Ldv~~--e~~~~Ri~ 170 (227)
T 3v9p_A 93 MFAGRREHLALVIEPALARGDWVVSDRFTDATFAYQGGGRGLPRDKLEALERWVQGGFQPDLTVLFDVPP--QIASARRG 170 (227)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHHTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCS--SCGGGTTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCEEEEeccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCH--HHHHHHHH
Confidence 33333332334456667788888888311 1 111111 12233333333444 66677887
Q ss_pred hCC---C-Cc-HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhh
Q 015825 265 ARG---T-ET-EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHL 314 (399)
Q Consensus 265 ~lD---~-~~-~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii 314 (399)
.|+ . +. ..+++++++....++.... ...+-+|-.+.+++++.+.+.+++
T Consensus 171 ~R~~~dr~E~~~~ef~~rv~~~Y~~la~~~-~~~~~vIDa~~s~eeV~~~I~~~l 224 (227)
T 3v9p_A 171 AVRMPDKFESESDAFFARTRAEYLRRAQEA-PHRFVIVDSSEPIAQIRKQLEGVL 224 (227)
T ss_dssp CCCCC---CCHHHHHHHHHHHHHHHHHHHC-TTTEEEEETTSCHHHHHHHHHHHH
T ss_pred hccCccchhhhhHHHHHHHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHHHHH
Confidence 663 1 11 2456666665554443211 223344445568999888877654
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.15 E-value=9.5e-06 Score=71.23 Aligned_cols=25 Identities=28% Similarity=0.274 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++.++|+||+||||||+.+.|+..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999998765
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.15 E-value=8e-06 Score=74.95 Aligned_cols=28 Identities=32% Similarity=0.381 Sum_probs=25.6
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
...+|++++|.|+|||||||++++|.+.
T Consensus 16 ~~~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 16 EGTQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp TTCCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHhc
Confidence 3468999999999999999999999997
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=1.4e-05 Score=71.20 Aligned_cols=26 Identities=23% Similarity=0.245 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+|.+++|.|++||||||+.+.|...+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999999876
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=98.12 E-value=3.6e-05 Score=70.08 Aligned_cols=172 Identities=16% Similarity=0.155 Sum_probs=86.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhh------hHHHHH
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGK------FLEFAS 204 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~------~~E~~~ 204 (399)
.+|.+++|.|++||||||+++.|...+.. .|..+. +++.+.... +| ..+...+..+. ..+...
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~v~-~~~~p~~~~---~g------~~i~~~l~~~~~~~~~~~~~~ll 72 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE-RGIEVQ-LTREPGGTP---LA------ERIRELLLAPSDEPMAADTELLL 72 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT-TTCCEE-EEESSCSSH---HH------HHHHHHHHSCCSSCCCHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH-cCCCcc-cccCCCCCH---HH------HHHHHHHhcCCCCCCCHHHHHHH
Confidence 46899999999999999999999887653 343442 344332110 00 11222221110 111122
Q ss_pred HhccccCCcHHHHHHHHHcCCceEEecch------h---------hHHHHH---cCCcceeEEEEcCCChHHHHHHHHhC
Q 015825 205 VHGNLYGTSVEAVEAVADAGKRCILDIDV------Q---------GARSVR---ASPLDAIFIFICPPSMEELEERLRAR 266 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~~~~~g~~~vldld~------~---------g~~~l~---~~~~~~~~ili~~P~lllLDEpl~~l 266 (399)
|....+......+...+..|..+++|--. + -...+. ...+.+-.++..+.+.+++-+|+..|
T Consensus 73 f~a~R~~~~~~~i~p~l~~g~~Vi~DRy~~S~~ayq~~~~g~~~~~~~~l~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R 152 (213)
T 4edh_A 73 MFAARAQHLAGVIRPALARGAVVLCDRFTDATYAYQGGGRGLPEARIAALESFVQGDLRPDLTLVFDLPVEIGLARAAAR 152 (213)
T ss_dssp HHHHHHHHHHHTHHHHHHTTCEEEEESCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECccHhHHHHHhhhccCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHHhc
Confidence 22221111223355556778888877311 1 111111 11222222333333468888999877
Q ss_pred C---CCc--HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhh
Q 015825 267 G---TET--EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHL 314 (399)
Q Consensus 267 D---~~~--~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii 314 (399)
+ ... ..+++++++....++.... ...+.+|-.+.+++++.+.+.+++
T Consensus 153 ~~~dr~E~~~~~~~~rv~~~y~~l~~~~-~~~~~vIDa~~s~eeV~~~I~~~l 204 (213)
T 4edh_A 153 GRLDRFEQEDRRFFEAVRQTYLQRAAQA-PERYQVLDAGLPLAEVQAGLDRLL 204 (213)
T ss_dssp SSCCTTTTSCHHHHHHHHHHHHHHHHHC-TTTEEEEETTSCHHHHHHHHHHHH
T ss_pred CCcCcccccHHHHHHHHHHHHHHHHHHC-CCcEEEEeCCCCHHHHHHHHHHHH
Confidence 4 221 1356666665554443211 223344445568988888776654
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.12 E-value=3.3e-06 Score=78.75 Aligned_cols=32 Identities=34% Similarity=0.458 Sum_probs=27.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhh---hccCCccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLM---KEFPSMFG 162 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~---~~~~~~~g 162 (399)
.+|++++|+|||||||||++++|+ |...+..|
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g 59 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSG 59 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCC
Confidence 468999999999999999999999 76655555
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=98.10 E-value=5.4e-05 Score=65.11 Aligned_cols=24 Identities=29% Similarity=0.451 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+++|+||+||||||+.+.|+..+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999998765
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0001 Score=65.68 Aligned_cols=28 Identities=18% Similarity=0.222 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
+|.+++|.|++||||||+.+.|+..+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5789999999999999999999987653
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=98.05 E-value=4.6e-07 Score=85.70 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=24.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+|++++|+||||||||||+..|++..
T Consensus 28 ~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 28 VAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 489999999999999999999999865
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=1.3e-05 Score=71.87 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
+|.+++|.|++||||||+.+.|...+.
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999987653
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.01 E-value=0.00015 Score=63.35 Aligned_cols=26 Identities=46% Similarity=0.760 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+|.+++|+|++||||||+.+.|+..+
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 57789999999999999999998754
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=1.2e-06 Score=84.25 Aligned_cols=32 Identities=22% Similarity=0.276 Sum_probs=28.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccC--Cccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFP--SMFG 162 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~--~~~g 162 (399)
.+|++++|+||||||||||+++|++++. +..|
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G 111 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR 111 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC
Confidence 4789999999999999999999999887 6666
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.95 E-value=1.6e-05 Score=75.53 Aligned_cols=85 Identities=20% Similarity=0.224 Sum_probs=50.9
Q ss_pred CccccchhhhhccCCCceEEEEeCCCh---HHHHHH---HHHhCCeEEEeccC-ccC-----------------------
Q 015825 81 LLNEDRILVIKKGSSSDDCLWFLEVDT---PYVREQ---KKVVGAEVVAWSKG-VIG----------------------- 130 (399)
Q Consensus 81 ~l~~dr~L~~~~~~~~~~~i~~~k~D~---~~~~~l---~~~~g~~v~~~s~~-~~~----------------------- 130 (399)
.+ ++++ .+.+.+|++||+|. +..+.+ .+..|++++.+|+. ..+
T Consensus 43 ~l--~~~l-----~~kp~ilVlNK~DL~~~~~~~~~~~~~~~~g~~~i~iSA~~~~gi~~L~~~i~~~l~~~~~~~~~~~ 115 (282)
T 1puj_A 43 MI--EDIL-----KNKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKG 115 (282)
T ss_dssp HH--HHHC-----SSSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTT
T ss_pred HH--HHHH-----CCCCEEEEEECcccCCHHHHHHHHHHHHhcCCcEEEEECCCcccHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45 5665 46778999999993 222222 24568899888865 111
Q ss_pred --CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc
Q 015825 131 --NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR 173 (399)
Q Consensus 131 --~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~ 173 (399)
..+-.++++|.+|+|||||+|.|.+......+ ..+.+|+...
T Consensus 116 ~~~~~~~v~~vG~~nvGKSsliN~l~~~~~~~~~-~~~g~T~~~~ 159 (282)
T 1puj_A 116 VKPRAIRALIIGIPNVGKSTLINRLAKKNIAKTG-DRPGITTSQQ 159 (282)
T ss_dssp CCCCCEEEEEEESTTSSHHHHHHHHHTSCCC-------------C
T ss_pred CCCCCceEEEEecCCCchHHHHHHHhcCceeecC-CCCCeeeeeE
Confidence 01235899999999999999999987655455 4555666554
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.93 E-value=9.2e-05 Score=64.30 Aligned_cols=27 Identities=22% Similarity=0.520 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+.+++|+|+|||||||+.+.|...+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999998764
|
| >4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A* | Back alignment and structure |
|---|
Probab=97.92 E-value=5e-06 Score=75.68 Aligned_cols=64 Identities=13% Similarity=0.147 Sum_probs=44.5
Q ss_pred EEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC--CHHHHHHHHHHhhc
Q 015825 248 FIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND--KLEECYENLKKHLG 315 (399)
Q Consensus 248 ~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h--dleea~~~l~~ii~ 315 (399)
++++..| .++.-+|+..||..+++++.+++.. ++...+....+|+||.|. ++++...++++++.
T Consensus 135 vi~V~ap-~e~r~~Rl~~Rdg~s~eea~~ri~~---Q~~~eek~~~AD~VIdN~~gsle~l~~qV~~l~~ 200 (210)
T 4i1u_A 135 VLVVDCP-VDTQIARVMQRNGFTREQVEAIIAR---QATREARLAAADDVIVNDAATPDALAVQVDALHQ 200 (210)
T ss_dssp EEEEECC-HHHHHHHHHHHHCCCHHHHHHHHHH---SCCHHHHHHTCSEEEECSSCCHHHHHHHHHHHHH
T ss_pred EEEEECC-HHHHHHHHHhcCCCCHHHHHHHHHH---cCChHHHHHhCCEEEECCCCCHHHHHHHHHHHHH
Confidence 3444433 6888899999988888998888765 222111123568998887 89998888877654
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.92 E-value=0.00011 Score=64.79 Aligned_cols=26 Identities=35% Similarity=0.534 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+.+++|+|++||||||+.+.|+..+
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 35789999999999999999998865
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=3.4e-05 Score=66.89 Aligned_cols=22 Identities=27% Similarity=0.409 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHhhhhh
Q 015825 134 KPVVITGPSGVGKGTLISMLMK 155 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~ 155 (399)
.+++|.|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 5789999999999999999987
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=97.90 E-value=9.5e-06 Score=73.71 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+..++|+||+||||||+.+.|+..+.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~ 30 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ 30 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346899999999999999999987653
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=97.89 E-value=8.4e-05 Score=66.14 Aligned_cols=26 Identities=31% Similarity=0.560 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
...+++|.|++||||||+.+.|+..+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998765
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=97.87 E-value=0.00022 Score=64.92 Aligned_cols=169 Identities=20% Similarity=0.213 Sum_probs=84.5
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCcccc-eeeecCCCccccccCCeeEEecChHHHHHHHhh------hh---hHH
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGF-SVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKD------GK---FLE 201 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~-~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~------~~---~~E 201 (399)
+|.+++|.|++||||||+++.|...+.. .|. .+ .+|+.+.... +| ......+.. .. ..+
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~-~~~~~v-~~~rep~~t~---~g------~~ir~~l~~~~~~~~~~~~~~~e 70 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLEQ-LGIRDM-VFTREPGGTQ---LA------EKLRSLLLDIKSVGDEVITDKAE 70 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHHH-TTCCCE-EEEESSCSSH---HH------HHHHHHHHSTTTTTTCCCCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH-cCCCcc-eeeeCCCCCH---HH------HHHHHHHhcccccccccCChHHH
Confidence 5889999999999999999999887643 332 22 3444432110 00 111111110 00 011
Q ss_pred HHHHhccccCCcHHHHHHHHHcCCceEEecch------hh---------HHHHH---c--CCcceeEEEEcCCChHHHHH
Q 015825 202 FASVHGNLYGTSVEAVEAVADAGKRCILDIDV------QG---------ARSVR---A--SPLDAIFIFICPPSMEELEE 261 (399)
Q Consensus 202 ~~~~~~~~~g~~~~~i~~~~~~g~~~vldld~------~g---------~~~l~---~--~~~~~~~ili~~P~lllLDE 261 (399)
...|...-+......+...++.|..++.|--. ++ ...+. . ..++. ++++. -+.+++-+
T Consensus 71 ~lL~~A~R~~~~~~~i~paL~~g~~VI~DRy~~S~~AYq~~~~g~~~~~~~~l~~~~~~~~~PDl-~i~Ld-v~~e~~~~ 148 (213)
T 4tmk_A 71 VLMFYAARVQLVETVIKPALANGTWVIGDRHDLSTQAYQGGGRGIDQHMLATLRDAVLGDFRPDL-TLYLD-VTPEVGLK 148 (213)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHTTCEEEEECCHHHHHHHTTTTTCCCHHHHHHHHHHHHTTCCCSE-EEEEE-CCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCEEEEcCcHhHHHHHcccccCCCHHHHHHHHHHhccCCCCCE-EEEEe-CCHHHHHH
Confidence 22222111111123355567788888888311 11 11111 1 12333 33333 33577788
Q ss_pred HHHhCCC---Cc--HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhc
Q 015825 262 RLRARGT---ET--EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 262 pl~~lD~---~~--~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~ 315 (399)
|+..|+. .. ...++++++....++.... ..+.+|-.+.+++++.+.+.+++.
T Consensus 149 Ri~~R~~~dr~E~~~~~f~~rv~~~y~~la~~~--~~~~vIDa~~s~eeV~~~I~~~l~ 205 (213)
T 4tmk_A 149 RARARGELDRIEQESFDFFNRTRARYLELAAQD--KSIHTIDATQPLEAVMDAIRTTVT 205 (213)
T ss_dssp HHHHHSSCCTTTTSCHHHHHHHHHHHHHHHHTC--TTEEEEETTSCHHHHHHHHHHHHH
T ss_pred HHHhcCCccchhhhHHHHHHHHHHHHHHHHHHC--CcEEEECCCCCHHHHHHHHHHHHH
Confidence 8876632 11 2356666665554443211 233444455689998887766553
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.00078 Score=58.72 Aligned_cols=25 Identities=32% Similarity=0.623 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..+++|.|++||||||+.+.|+..+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999998754
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=97.85 E-value=9.7e-07 Score=87.90 Aligned_cols=62 Identities=18% Similarity=0.181 Sum_probs=39.9
Q ss_pred CC--ChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhh-cccCC-eeee
Q 015825 253 PP--SMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHL-GLDGS-IATN 323 (399)
Q Consensus 253 ~P--~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii-~~~~~-~~~~ 323 (399)
+| +++++||++...|+...+..+.++.... .. ...+ +++|..++....+++++ .+.+| +...
T Consensus 139 dP~~di~ildeel~~~D~~~~~k~~~~l~~~~---~~----~g~t--i~sh~~~~~~~l~~~i~~~L~~G~~~~~ 204 (392)
T 1ni3_A 139 DPIRDLSIIVDELLIKDAEFVEKHLEGLRKIT---SR----GANT--LEMKAKKEEQAIIEKVYQYLTETKQPIR 204 (392)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT---CC----SSCS--SSHHHHHHHHHHHHHHHHHHHTTCSCGG
T ss_pred CcchhhhhchhhhHHHHHHHHHHHHHHHHHHH---Hh----cCCc--cccccHHHHHHHHHHHHHHhccCCceee
Confidence 67 8999999999998766555555554420 11 1112 23788888888888877 56666 4443
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=97.85 E-value=2.1e-05 Score=77.60 Aligned_cols=62 Identities=24% Similarity=0.245 Sum_probs=46.7
Q ss_pred CCceEEEEeCCCh--H-----HHH----HHHHHhCC---eEEEeccC-ccC-----------CCCcEEEEEcCCCCCHHH
Q 015825 95 SSDDCLWFLEVDT--P-----YVR----EQKKVVGA---EVVAWSKG-VIG-----------NVEKPVVITGPSGVGKGT 148 (399)
Q Consensus 95 ~~~~~i~~~k~D~--~-----~~~----~l~~~~g~---~v~~~s~~-~~~-----------~~g~~~~l~GpsG~GKST 148 (399)
+.+.++++||+|. . .+. +..+..|+ +++.+|+. ..+ ..++.++++|++|+||||
T Consensus 98 ~~piilV~NK~DLl~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~I~~~~~~~~i~~vG~~nvGKSt 177 (369)
T 3ec1_A 98 DNPILLVGNKADLLPRSVKYPKLLRWMRRMAEELGLCPVDVCLVSAAKGIGMAKVMEAINRYREGGDVYVVGCTNVGKST 177 (369)
T ss_dssp TSCEEEEEECGGGSCTTCCHHHHHHHHHHHHHTTTCCCSEEEECBTTTTBTHHHHHHHHHHHHTTSCEEEECCTTSSHHH
T ss_pred CCCEEEEEEChhcCCCccCHHHHHHHHHHHHHHcCCCcccEEEEECCCCCCHHHHHHHHHhhcccCcEEEEcCCCCchHH
Confidence 6678889999993 1 122 22356777 78888876 222 257889999999999999
Q ss_pred HHhhhhhc
Q 015825 149 LISMLMKE 156 (399)
Q Consensus 149 l~~~L~~~ 156 (399)
|+|.|.+.
T Consensus 178 liN~L~~~ 185 (369)
T 3ec1_A 178 FINRIIEE 185 (369)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99999987
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=97.82 E-value=1.2e-05 Score=77.44 Aligned_cols=89 Identities=26% Similarity=0.296 Sum_probs=58.4
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCcc--------cceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMF--------GFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~--------g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
++++++|+||+|||||||...|+..++... -..+..+|+.++..+..++.|+|.+...+......+.|.+..
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr~~~igTakp~~~E~~gvphhlid~~~~~e~~s~~~F~~~a 81 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYRGMDIGTAKITAEEMDGVPHHLIDIKDPSESFSVADFQDLA 81 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBTTCCTTTTCCCHHHHTTCCEESSSCBCTTSCCCHHHHHHHH
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCccceeecCcccceeeeeecCCCCCHHHHcCCCEEEeccCChhhhccHHHHHHHH
Confidence 356899999999999999999998765310 113346888888889999999988754443333222333221
Q ss_pred HHhccccCCcHHHHHHHHHcCCceEEe
Q 015825 204 SVHGNLYGTSVEAVEAVADAGKRCILD 230 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~g~~~vld 230 (399)
...+.++.+.|...++-
T Consensus 82 ----------~~~i~~i~~~gk~pIlV 98 (322)
T 3exa_A 82 ----------TPLITEIHERGRLPFLV 98 (322)
T ss_dssp ----------HHHHHHHHHTTCEEEEE
T ss_pred ----------HHHHHHHHhCCCcEEEE
Confidence 34455555666665544
|
| >3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str} | Back alignment and structure |
|---|
Probab=97.82 E-value=1.9e-05 Score=77.87 Aligned_cols=63 Identities=30% Similarity=0.329 Sum_probs=47.8
Q ss_pred CCceEEEEeCCCh--H-----HHH----HHHHHhCC---eEEEeccC-ccC-----------CCCcEEEEEcCCCCCHHH
Q 015825 95 SSDDCLWFLEVDT--P-----YVR----EQKKVVGA---EVVAWSKG-VIG-----------NVEKPVVITGPSGVGKGT 148 (399)
Q Consensus 95 ~~~~~i~~~k~D~--~-----~~~----~l~~~~g~---~v~~~s~~-~~~-----------~~g~~~~l~GpsG~GKST 148 (399)
+.+.+|++||+|. . .++ ...+..|+ +++.+|+. ..+ .++..++++|.+|+||||
T Consensus 96 ~~p~ilV~NK~DL~~~~~~~~~~~~~l~~~~~~~g~~~~~v~~iSA~~g~gi~~L~~~l~~~~~~~~i~~vG~~nvGKSt 175 (368)
T 3h2y_A 96 NNKVLLVGNKADLIPKSVKHDKVKHWMRYSAKQLGLKPEDVFLISAAKGQGIAELADAIEYYRGGKDVYVVGCTNVGKST 175 (368)
T ss_dssp SSCEEEEEECGGGSCTTSCHHHHHHHHHHHHHHTTCCCSEEEECCTTTCTTHHHHHHHHHHHHTTSCEEEEEBTTSSHHH
T ss_pred CCcEEEEEEChhcCCcccCHHHHHHHHHHHHHHcCCCcccEEEEeCCCCcCHHHHHhhhhhhcccceEEEecCCCCChhH
Confidence 6788899999993 1 222 22466788 78888876 222 257889999999999999
Q ss_pred HHhhhhhcc
Q 015825 149 LISMLMKEF 157 (399)
Q Consensus 149 l~~~L~~~~ 157 (399)
|+|.|.+..
T Consensus 176 liN~L~~~~ 184 (368)
T 3h2y_A 176 FINRMIKEF 184 (368)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhh
Confidence 999999864
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.80 E-value=4.8e-05 Score=66.67 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+++|.|++||||||+.+.|...+.
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999988664
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=97.80 E-value=7.1e-06 Score=73.97 Aligned_cols=29 Identities=28% Similarity=0.414 Sum_probs=26.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
.+|++++|+||||||||||+++|++.+++
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~~ 48 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALSA 48 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 47899999999999999999999999874
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.79 E-value=1e-06 Score=88.41 Aligned_cols=24 Identities=38% Similarity=0.530 Sum_probs=22.1
Q ss_pred EEEEcCCCCCHHHHHhhhhhccCC
Q 015825 136 VVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
++|+||||||||||+++|+|...+
T Consensus 34 I~lvG~sGaGKSTLln~L~g~~~~ 57 (418)
T 2qag_C 34 LMVVGESGLGKSTLINSLFLTDLY 57 (418)
T ss_dssp EEEECCTTSSHHHHHHHHTTCCCC
T ss_pred EEEECCCCCcHHHHHHHHhCCCCC
Confidence 699999999999999999998764
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=97.79 E-value=0.0012 Score=58.44 Aligned_cols=28 Identities=32% Similarity=0.552 Sum_probs=24.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
...+.+++|+|++||||||+.+.|+..+
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4567889999999999999999998754
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=97.78 E-value=1.3e-05 Score=79.77 Aligned_cols=69 Identities=23% Similarity=0.321 Sum_probs=47.4
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccCCcc--------cceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHH
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFPSMF--------GFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLE 201 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~~~~--------g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E 201 (399)
..+++|+||+|||||||...|+..++... -..+.++|+.+...+..++.|+|.+...+......+.|.+
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr~l~i~T~kp~~~E~~gv~hhlid~~~~~~~~s~~~F~~ 78 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYKDIPIITNKHPLQEREGIPHHVMNHVDWSEEYYSHRFET 78 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBSSCTTTTTCCCGGGTTTCCEESCSCBCTTSCCCHHHHHH
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceecccccccCCCCHHHHcCchhhcCCccChHhHhhHHHHHH
Confidence 35789999999999999999987764310 0123457888888899999999876443333333333433
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00017 Score=63.12 Aligned_cols=26 Identities=38% Similarity=0.538 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+|.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998755
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.77 E-value=3.3e-06 Score=84.83 Aligned_cols=68 Identities=21% Similarity=0.278 Sum_probs=39.8
Q ss_pred cCCCCcE--EEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHH
Q 015825 129 IGNVEKP--VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASV 205 (399)
Q Consensus 129 ~~~~g~~--~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~ 205 (399)
...+|++ ++|+||||||||||+|+|+|.. ..|..+...+.. .....++|++|...+++.+ ++.++..+
T Consensus 36 ~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--l~g~~~~~~~~~---~~~~~i~~v~Q~~~l~~~l----tv~D~~~~ 105 (427)
T 2qag_B 36 SVSQGFCFNILCVGETGLGKSTLMDTLFNTK--FEGEPATHTQPG---VQLQSNTYDLQESNVRLKL----TIVSTVGF 105 (427)
T ss_dssp SCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--C-------CCSS---CEEEEEEEEEEC--CEEEE----EEEEEECC
T ss_pred EecCCCeeEEEEECCCCCCHHHHHHHHhCcc--ccCCcCCCCCcc---ceEeeEEEEeecCcccccc----chhhhhhh
Confidence 4468999 9999999999999999999984 233233221111 1123478999886554433 55555443
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=97.76 E-value=1.2e-05 Score=79.60 Aligned_cols=56 Identities=16% Similarity=0.141 Sum_probs=38.8
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCc-ccceeeecCCCccccccCCeeEEecC
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSM-FGFSVSHTTRAPRAMEKDGVHYHFTE 186 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~-~g~~i~~ttr~~~~~~~~~i~yvfq~ 186 (399)
..+|++++|+||||||||||+++|++.+++. .| .+.....+........++|++|.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g-~I~~~e~~~e~~~~~~~~~v~Q~ 189 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSY-HIITIEDPIEYVFKHKKSIVNQR 189 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCC-EEEEEESSCCSCCCCSSSEEEEE
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCc-EEEEecccHhhhhccCceEEEee
Confidence 3578999999999999999999999998876 56 44221112221222346778773
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00018 Score=64.12 Aligned_cols=64 Identities=14% Similarity=0.130 Sum_probs=35.7
Q ss_pred eEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC-CHH----HHHHHHHHhh
Q 015825 247 IFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLE----ECYENLKKHL 314 (399)
Q Consensus 247 ~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h-dle----ea~~~l~~ii 314 (399)
..+++.. +.+++-+|+..|+..+.+++.+++.........+ ..+|++|.|. +++ ++.+.+.+++
T Consensus 126 ~vi~l~~-~~e~~~~Rl~~R~~~~~e~~~~r~~~q~~~~~~~---~~ad~vIdn~~~~~~~~~~~~~~i~~~~ 194 (206)
T 1jjv_A 126 RILVVDV-SPQTQLARSAQRDNNNFEQIQRIMNSQVSQQERL---KWADDVINNDAELAQNLPHLQQKVLELH 194 (206)
T ss_dssp EEEEEEC-CHHHHHHHHC-----CHHHHHHHHHHSCCHHHHH---HHCSEEEECCSCHHHHHHHHHHHHHHHH
T ss_pred EEEEEEC-CHHHHHHHHHHcCCCCHHHHHHHHHhcCChHHHH---HhCCEEEECCCCccccHHHHHHHHHHHH
Confidence 3455544 4688889998887667777877776411011111 1347777665 788 7777776654
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=4.3e-06 Score=81.56 Aligned_cols=33 Identities=33% Similarity=0.254 Sum_probs=29.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
..+|++++|+||||||||||+++|++.+.+..|
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g 84 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLLTAAGH 84 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCC
Confidence 457999999999999999999999998877666
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00044 Score=63.63 Aligned_cols=25 Identities=28% Similarity=0.644 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.-.++|+||+||||||+.+.|+..+
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~ 32 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKF 32 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999998765
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.73 E-value=0.00037 Score=64.98 Aligned_cols=25 Identities=20% Similarity=0.429 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
|+.++|+|++||||||+.++|++.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 8999999999999999999999865
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=97.73 E-value=6.5e-05 Score=68.95 Aligned_cols=43 Identities=26% Similarity=0.387 Sum_probs=31.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP 172 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~ 172 (399)
..+|.+++|.|++||||||+++.|...+....|..+..+|+.+
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~~~g~~v~~~treP 60 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSEIYGVNNVVLTREP 60 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHHHHCGGGEEEEESS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhccCceeeEeeeCC
Confidence 3578999999999999999999999876531344454434443
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=97.72 E-value=7.6e-05 Score=69.54 Aligned_cols=123 Identities=11% Similarity=0.031 Sum_probs=62.0
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccCCc--ccce------eeecCCCccccccCCeeEEecChHHHHH-HHhhhhhHHHHH
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFPSM--FGFS------VSHTTRAPRAMEKDGVHYHFTERSVMEK-AIKDGKFLEFAS 204 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~~~--~g~~------i~~ttr~~~~~~~~~i~yvfq~~~lf~~-~~~~~~~~E~~~ 204 (399)
++++|+||+||||||+.+.|++.+... .... ...+|..+...+..++.|+|.+...+.. ......|.+..
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~~~~~~~~~t~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~f~~~~- 80 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQCCPQIATGSGRPLESELQSTRRIYLDSRPLTEGILDAESAHRRL- 80 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGGGCGGGTTTTTCCCGGGGTTCCEECSCCCCGGGCSCCHHHHHHHH-
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHhccCCCccccCCCCHHHHhCCCeEEEeeeccccccccHHHHHHHH-
Confidence 468999999999999999998765321 0000 0123444444555667777665321110 00001111111
Q ss_pred HhccccCCcHHHHHHHHHcCCceEEecch-hhHHHHH-c----CCcceeEEEEcCCChHHHHHHHHhCC
Q 015825 205 VHGNLYGTSVEAVEAVADAGKRCILDIDV-QGARSVR-A----SPLDAIFIFICPPSMEELEERLRARG 267 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~~~~~g~~~vldld~-~g~~~l~-~----~~~~~~~ili~~P~lllLDEpl~~lD 267 (399)
...+ +.+..+..++++... .-.+.+. . .......+++..|..+.+.+|+..|.
T Consensus 81 ---------~~~i-~~~~~g~~vIl~gg~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~e~l~~Rl~~R~ 139 (253)
T 2ze6_A 81 ---------IFEV-DWRKSEEGLILEGGSISLLNCMAKSPFWRSGFQWHVKRLRLGDSDAFLTRAKQRV 139 (253)
T ss_dssp ---------HHHH-HTTTTSSEEEEEECCHHHHHHHHHCTTTTSSCEEEEEECCCCCHHHHHHHHHHHH
T ss_pred ---------HHHH-HHHhCCCCeEEeccHHHHHHHHHhcccccccCceEEEEecchhHHHHHHHHHHHH
Confidence 1222 223455566665422 1222222 2 22334556666665588888887663
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=0.00016 Score=65.83 Aligned_cols=23 Identities=35% Similarity=0.728 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998755
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.71 E-value=0.0005 Score=60.16 Aligned_cols=65 Identities=15% Similarity=0.286 Sum_probs=37.6
Q ss_pred eEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC-CHHHHHHHHHHhhc
Q 015825 247 IFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKKHLG 315 (399)
Q Consensus 247 ~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h-dleea~~~l~~ii~ 315 (399)
.++++.-| .+++-+|+..++....+++.+++.....+..... . ..+++.++ +++++.+.+.+++.
T Consensus 125 ~vi~l~~~-~e~~~~Rl~~r~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~Id~~~~~~~~~~~i~~~l~ 190 (195)
T 2pbr_A 125 ITLLLDIP-VDIALRRLKEKNRFENKEFLEKVRKGFLELAKEE--E-NVVVIDASGEEEEVFKEILRALS 190 (195)
T ss_dssp EEEEEECC-HHHHHHHHHTTTCCCCHHHHHHHHHHHHHHHHHS--T-TEEEEETTSCHHHHHHHHHHHHH
T ss_pred EEEEEeCC-HHHHHHHhhccCccchHHHHHHHHHHHHHHHhhC--C-CEEEEECCCCHHHHHHHHHHHHH
Confidence 34444433 5888889887765444556666655433332111 1 13555554 88998888877653
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=97.69 E-value=0.002 Score=58.35 Aligned_cols=26 Identities=38% Similarity=0.528 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++..++|.|++||||||+.+.|+..+
T Consensus 6 ~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp -CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999998755
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=0.00053 Score=61.87 Aligned_cols=26 Identities=27% Similarity=0.497 Sum_probs=23.6
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
|++++|=|+-||||||+++.|...+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 67899999999999999999998764
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.0023 Score=55.77 Aligned_cols=26 Identities=27% Similarity=0.498 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++.+++|.|++||||||+.+.|+..+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998754
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=97.63 E-value=4.2e-06 Score=77.14 Aligned_cols=29 Identities=17% Similarity=0.331 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
++++|+||||||||||+++|++.+.+..|
T Consensus 28 ~~~~i~GpnGsGKSTll~~i~g~~~~~~G 56 (227)
T 1qhl_A 28 LVTTLSGGNGAGKSTTMAAFVTALIPDLT 56 (227)
T ss_dssp HHHHHHSCCSHHHHHHHHHHHHHHSCCTT
T ss_pred cEEEEECCCCCCHHHHHHHHhcccccCCC
Confidence 67899999999999999999999998877
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=97.62 E-value=2.3e-05 Score=79.88 Aligned_cols=32 Identities=16% Similarity=0.221 Sum_probs=29.5
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
..+ ++++|+||||||||||+++|+|++++..|
T Consensus 27 i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G 58 (483)
T 3euj_A 27 FDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLT 58 (483)
T ss_dssp CCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTT
T ss_pred Ecc-ceEEEECCCCCcHHHHHHHHhcCCCCCCC
Confidence 346 99999999999999999999999999877
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.0011 Score=59.69 Aligned_cols=26 Identities=31% Similarity=0.648 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++..++|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999998865
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=97.61 E-value=2.5e-05 Score=75.13 Aligned_cols=59 Identities=22% Similarity=0.211 Sum_probs=44.7
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCc--------ccceeeecCCCccccccCCeeEEecChHHH
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSM--------FGFSVSHTTRAPRAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~--------~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf 190 (399)
..++++|+||+|||||||...|+..++.. .-..+.++|+.++..+..++.|+|.+...+
T Consensus 9 ~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~~~~igTakp~~~E~~~v~hhlid~~~~ 75 (316)
T 3foz_A 9 LPKAIFLMGPTASGKTALAIELRKILPVELISVDSALIYKGMDIGTAKPNAEELLAAPHRLLDIRDP 75 (316)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBTTCCTTTTCCCHHHHHHSCEETSSCBCT
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccccccccCCCCCHHHHcCCCEEEeccCCc
Confidence 35689999999999999999999876521 011234688888888888899998875444
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00049 Score=62.70 Aligned_cols=167 Identities=13% Similarity=0.140 Sum_probs=83.0
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhh-----hhHHHHHHh
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDG-----KFLEFASVH 206 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~-----~~~E~~~~~ 206 (399)
+|.+++|.|++||||||+++.|...+.. .+ . .++.+..... .| ......+... ...+.+.|.
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~-~~-~---~~~ep~~~t~--~g------~~ir~~l~~~~~~~~~~~~~llf~ 70 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQP-NC-K---LLKFPERSTR--IG------GLINEYLTDDSFQLSDQAIHLLFS 70 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCS-SE-E---EEESSCTTSH--HH------HHHHHHHHCTTSCCCHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc-cc-e---EEEecCCCCh--HH------HHHHHHHHhcccCCCHHHHHHHHH
Confidence 6899999999999999999999987754 12 1 1222210000 00 0111111110 111222333
Q ss_pred ccccCCcHHHHHHHHHcCCceEEecch------hh--------HHHHHc---C--CcceeEEEE--cCCChHHHHHHHHh
Q 015825 207 GNLYGTSVEAVEAVADAGKRCILDIDV------QG--------ARSVRA---S--PLDAIFIFI--CPPSMEELEERLRA 265 (399)
Q Consensus 207 ~~~~g~~~~~i~~~~~~g~~~vldld~------~g--------~~~l~~---~--~~~~~~ili--~~P~lllLDEpl~~ 265 (399)
..-+. ..+.+...++.|..++.|--. ++ ...+.. . .++ +++++ .+| ++.-+|...
T Consensus 71 a~R~~-~~~~I~paL~~g~~VI~DRy~~S~~ayq~~~~l~~~~~~~l~~~~~~~~~PD-lti~L~dv~p--e~~~~R~~~ 146 (216)
T 3tmk_A 71 ANRWE-IVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLLKPD-LTLFLSTQDV--DNNAEKSGF 146 (216)
T ss_dssp HHHHT-THHHHHHHHHTTCEEEEESCHHHHHHHHHTTCCTTCCHHHHHGGGTTSBCCS-EEEEEECSCC--SCGGGCCSS
T ss_pred HHHHH-HHHHHHHHHHcCCEEEEeccHhHHHHHHHhcCCCHHHHHHHHHHhhCCCCCC-EEEEEeCCCH--HHHHHHhcc
Confidence 22232 345667777888888888311 11 111111 1 223 33444 344 334455432
Q ss_pred C-CCCcHHHHHHHHHHHHHHHHhc---cCCCcceEEE-eCCCHHHHHHHHHHhhc
Q 015825 266 R-GTETEDQILKRLRNAKEEIKQG---KSSGIFDHIL-YNDKLEECYENLKKHLG 315 (399)
Q Consensus 266 l-D~~~~e~i~~~L~~~~~~l~~~---~~~~~~t~Vi-v~hdleea~~~l~~ii~ 315 (399)
+ |......+++++++...++... .....+.+|- .+.+++++.+.+.+++.
T Consensus 147 ~~dr~E~~~f~~rvr~~Y~~la~~~~~~~~~~~~vID~a~~s~eeV~~~I~~~i~ 201 (216)
T 3tmk_A 147 GDERYETVKFQEKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVE 201 (216)
T ss_dssp SCCTTCCHHHHHHHHHHHHHHHHHHHHTTCCSEEEEECTTCCHHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHHHHHHHhccccCCCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 2 3222357777777766554331 0122333333 35689998888776554
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00018 Score=64.20 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=24.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+|.+++|.|++||||||+.+.|...+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 367899999999999999999998764
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00013 Score=73.12 Aligned_cols=26 Identities=31% Similarity=0.342 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..++++|+|++||||||+.+.|+..+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 56889999999999999999998754
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=3e-05 Score=69.34 Aligned_cols=31 Identities=32% Similarity=0.320 Sum_probs=27.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
.+|++++|+|||||||||++++|++.+. ..|
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G 53 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY-QKG 53 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH-HTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-hcC
Confidence 5799999999999999999999999875 345
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00085 Score=57.69 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++++|.|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 478999999999999999998754
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.00091 Score=60.31 Aligned_cols=26 Identities=38% Similarity=0.643 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++..++|+|++||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 46789999999999999999998865
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00017 Score=68.28 Aligned_cols=65 Identities=14% Similarity=0.056 Sum_probs=41.2
Q ss_pred eEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC-CHHHHHHHHHHhhc
Q 015825 247 IFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKKHLG 315 (399)
Q Consensus 247 ~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h-dleea~~~l~~ii~ 315 (399)
..+++..| .+++-+|+..|+..+.+.+.+++.......... ..++++|.|. +++++.+.+.+++.
T Consensus 202 ~vI~l~a~-~ev~~~Rl~~R~g~s~e~~~~ri~~q~~~~~~~---~~AD~vIdn~~s~eel~~~I~~~l~ 267 (281)
T 2f6r_A 202 EVWTVVIP-ETEAVRRIVERDGLSEAAAQSRLQSQMSGQQLV---EQSNVVLSTLWESHVTQSQVEKAWN 267 (281)
T ss_dssp EEEEEECC-HHHHHHHHHHHHCCCHHHHHHHHHTSCCHHHHH---HTCSEEEECSSCHHHHHHHHHHHHH
T ss_pred EEEEEcCC-HHHHHHHHHHcCCCCHHHHHHHHHHcCChHhhH---hhCCEEEECCCCHHHHHHHHHHHHH
Confidence 44555544 688888988886556677777665431111111 1357788776 88998888877654
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.53 E-value=4e-05 Score=66.34 Aligned_cols=27 Identities=26% Similarity=0.544 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+++++|+|||||||||++++|++.+.
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 367899999999999999999999764
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00024 Score=62.34 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+.+++|+|++||||||+.+.|...+
T Consensus 4 ~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 4 TPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999998754
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=97.47 E-value=0.0047 Score=56.23 Aligned_cols=27 Identities=41% Similarity=0.620 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..+..++|+|++||||||+.+.|+..+
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998765
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00015 Score=73.01 Aligned_cols=79 Identities=27% Similarity=0.306 Sum_probs=47.2
Q ss_pred cCCCceEEEEeCCCh-HH-HHHH-H--HHhCC-eEEEeccC-ccC---------------C-C---------CcEEEEEc
Q 015825 93 GSSSDDCLWFLEVDT-PY-VREQ-K--KVVGA-EVVAWSKG-VIG---------------N-V---------EKPVVITG 140 (399)
Q Consensus 93 ~~~~~~~i~~~k~D~-~~-~~~l-~--~~~g~-~v~~~s~~-~~~---------------~-~---------g~~~~l~G 140 (399)
..+.+.+++.||+|. +. .... . ..+|+ +++.+|+. ..+ . . .-.++|+|
T Consensus 108 ~~~~p~ilv~NK~D~~~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~~~~~kvaivG 187 (439)
T 1mky_A 108 KSTVDTILVANKAENLREFEREVKPELYSLGFGEPIPVSAEHNINLDTMLETIIKKLEEKGLDLESKPEITDAIKVAIVG 187 (439)
T ss_dssp HHTCCEEEEEESCCSHHHHHHHTHHHHGGGSSCSCEECBTTTTBSHHHHHHHHHHHHHHTTCCSSSCCCCCSCEEEEEEC
T ss_pred HcCCCEEEEEeCCCCccccHHHHHHHHHhcCCCCEEEEeccCCCCHHHHHHHHHHhcccccccchhccccccCceEEEEC
Confidence 357889999999994 22 1111 1 24565 67777765 111 0 1 12689999
Q ss_pred CCCCCHHHHHhhhhhccCCcccceeeecCCCc
Q 015825 141 PSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP 172 (399)
Q Consensus 141 psG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~ 172 (399)
+||||||||+|.|++......+ ..+.+|+.+
T Consensus 188 ~~gvGKSTLln~l~g~~~~~v~-~~~gtT~d~ 218 (439)
T 1mky_A 188 RPNVGKSTLFNAILNKERALVS-PIPGTTRDP 218 (439)
T ss_dssp STTSSHHHHHHHHHTSTTEEEC-CCC------
T ss_pred CCCCCHHHHHHHHhCCcccccC-CCCCCcCCc
Confidence 9999999999999997643222 333455443
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=97.42 E-value=0.0018 Score=56.95 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=21.7
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccC
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.++|.|++||||||+++.|+..+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 689999999999999999998653
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00014 Score=74.77 Aligned_cols=35 Identities=23% Similarity=0.311 Sum_probs=30.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceee
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS 166 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~ 166 (399)
.+|+.++|+||||||||||+++|++++++..| .+.
T Consensus 258 ~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~g-iit 292 (511)
T 2oap_1 258 EHKFSAIVVGETASGKTTTLNAIMMFIPPDAK-VVS 292 (511)
T ss_dssp HTTCCEEEEESTTSSHHHHHHHHGGGSCTTCC-EEE
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHhhCCCCCC-EEE
Confidence 37889999999999999999999999998777 443
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0014 Score=55.98 Aligned_cols=23 Identities=26% Similarity=0.352 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998854
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=97.37 E-value=8.9e-05 Score=74.36 Aligned_cols=33 Identities=27% Similarity=0.365 Sum_probs=29.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGF 163 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~ 163 (399)
.+|.+++|+||||||||||+++|++.+++..|.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~ 197 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERN 197 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCE
Confidence 368899999999999999999999999887773
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=97.37 E-value=7.4e-05 Score=66.47 Aligned_cols=30 Identities=20% Similarity=0.314 Sum_probs=26.1
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
....+|..++|+|+||||||||++.|++..
T Consensus 21 ~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~ 50 (210)
T 1pui_A 21 LPSDTGIEVAFAGRSNAGKSSALNTLTNQK 50 (210)
T ss_dssp SSCSCSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CCCCCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 345688999999999999999999999876
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=97.36 E-value=3.9e-05 Score=68.67 Aligned_cols=26 Identities=35% Similarity=0.530 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
++++|.|++||||||+++.|...+..
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 37899999999999999999987653
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=97.35 E-value=3.1e-05 Score=68.12 Aligned_cols=27 Identities=33% Similarity=0.378 Sum_probs=25.1
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccCCc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFPSM 160 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~~~ 160 (399)
++++|+|+||||||||++.|++++.+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~ 29 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRER 29 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhc
Confidence 579999999999999999999998775
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.32 E-value=7.5e-05 Score=66.82 Aligned_cols=32 Identities=25% Similarity=0.094 Sum_probs=27.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
.+|.+++|+|||||||||++++|.+.+++..|
T Consensus 20 ~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~ 51 (201)
T 1rz3_A 20 AGRLVLGIDGLSRSGKTTLANQLSQTLREQGI 51 (201)
T ss_dssp SSSEEEEEEECTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCC
Confidence 46889999999999999999999998765444
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=4.9e-05 Score=66.48 Aligned_cols=32 Identities=28% Similarity=0.362 Sum_probs=27.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
.+|+.++|.||+|+|||||+++|++...+..|
T Consensus 36 ~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g 67 (180)
T 3ec2_A 36 EEGKGLTFVGSPGVGKTHLAVATLKAIYEKKG 67 (180)
T ss_dssp GGCCEEEECCSSSSSHHHHHHHHHHHHHHHSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHHHHHcC
Confidence 35899999999999999999999998754444
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=97.28 E-value=0.00093 Score=63.12 Aligned_cols=23 Identities=26% Similarity=0.408 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.+++|+|++||||||+.+.|...
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~ 25 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAK 25 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999874
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0025 Score=54.69 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+++|.|++||||||+.+.|+..+
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 589999999999999999998754
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00016 Score=63.14 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
+| +.+|+||||||||||+++|...+.+..+
T Consensus 26 ~g-~~~i~G~NGsGKStll~ai~~~l~~~~~ 55 (182)
T 3kta_A 26 KG-FTAIVGANGSGKSNIGDAILFVLGGLSA 55 (182)
T ss_dssp SS-EEEEEECTTSSHHHHHHHHHHHTTCCCT
T ss_pred CC-cEEEECCCCCCHHHHHHHHHHHHcCCcc
Confidence 44 9999999999999999999988765443
|
| >3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.0033 Score=56.18 Aligned_cols=166 Identities=17% Similarity=0.184 Sum_probs=80.8
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhh---hHHHHHHhccccC
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGK---FLEFASVHGNLYG 211 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~---~~E~~~~~~~~~g 211 (399)
+++|=|+-||||||+++.|...+.. .|..+.. |+.|..... ......++.... ..+...|... +.
T Consensus 2 fI~~EG~DGsGKsTq~~~L~~~L~~-~g~~v~~-treP~~t~~---------~~~ir~~l~~~~~~~~~~~ll~~a~-r~ 69 (197)
T 3hjn_A 2 FITFEGIDGSGKSTQIQLLAQYLEK-RGKKVIL-KREPGGTET---------GEKIRKILLEEEVTPKAELFLFLAS-RN 69 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEE-EESSCSSHH---------HHHHHHHHHHSCCCHHHHHHHHHHH-HH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-CCCcEEE-EECCCCCcH---------HHHHHHHhhcccCChHHHHHHHHHH-HH
Confidence 5788999999999999999887643 3434333 332211100 001111110000 0011111111 01
Q ss_pred CcHHHHHHHHHcCCceEEecch------hh---------HHHH---Hc--CCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 212 TSVEAVEAVADAGKRCILDIDV------QG---------ARSV---RA--SPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 212 ~~~~~i~~~~~~g~~~vldld~------~g---------~~~l---~~--~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.....+...+..|..++.|--. ++ ...+ .. ..++. ++++.- +.++.-+|...+|....
T Consensus 70 ~~~~~I~~~L~~g~~Vi~DRy~~S~~ayq~~~~~~~~~~i~~l~~~~~~~~~PDl-~i~Ld~-~~e~~~~R~~~~dr~e~ 147 (197)
T 3hjn_A 70 LLVTEIKQYLSEGYAVLLDRYTDSSVAYQGFGRNLGKEIVEELNDFATDGLIPDL-TFYIDV-DVETALKRKGELNRFEK 147 (197)
T ss_dssp HHHHHHHHHHTTTCEEEEESCHHHHHHHHTTTTCSCHHHHHHHHHHHHTTCCCSE-EEEEEC-CHHHHHHHC---CTTCC
T ss_pred HHHHHHHHHHHCCCeEEecccchHHHHHHHhccCCCHHHHHHHHhhhhcCCCCCc-eeecCc-ChHHHHHhCcCcCcccc
Confidence 1123455666778888877311 11 1111 11 12333 333333 34666778777776555
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhc
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~ 315 (399)
.++++++++...++.... +..+.+|-.+.+++++.+.+.+.+.
T Consensus 148 ~ef~~rv~~~y~~la~~~-~~~~~~IDa~~~~eeV~~~I~~~i~ 190 (197)
T 3hjn_A 148 REFLERVREGYLVLAREH-PERIVVLDGKRSIEEIHRDVVREVK 190 (197)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTTEEEEETTSCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHhC-CCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 677777776655553321 2233444455689998888877654
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=97.24 E-value=9.2e-05 Score=63.37 Aligned_cols=28 Identities=18% Similarity=0.281 Sum_probs=25.6
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
+|+.++|+||+|+|||||+++|++...+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~ 62 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE 62 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 6899999999999999999999997753
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0037 Score=54.34 Aligned_cols=24 Identities=33% Similarity=0.459 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999998754
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00018 Score=69.64 Aligned_cols=53 Identities=17% Similarity=0.232 Sum_probs=37.4
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccCCccc--------ceeeecCCCccccccCCeeEEecC
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFPSMFG--------FSVSHTTRAPRAMEKDGVHYHFTE 186 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~~~~g--------~~i~~ttr~~~~~~~~~i~yvfq~ 186 (399)
+.++|+||+|||||||.+.|+..+....- ....++|..+...+..++.|+|.+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~qvy~~~~igTakp~~~e~~gvph~lid 66 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLID 66 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTTTBTTCCTTTTCCCHHHHHHSCEETSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchhhhcCCCcccCCCCHHHHcCCCEEEee
Confidence 58999999999999999999987642100 011235666666666777787665
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0067 Score=54.30 Aligned_cols=23 Identities=26% Similarity=0.635 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|.|++||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999999998754
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00023 Score=63.59 Aligned_cols=28 Identities=32% Similarity=0.379 Sum_probs=25.3
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..++++++|+|+|||||||+++.|.+.+
T Consensus 18 ~~~~~~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 18 GSKTFIIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp SCCCEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3478899999999999999999999976
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00021 Score=64.55 Aligned_cols=25 Identities=40% Similarity=0.724 Sum_probs=22.9
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+.+++|+|||||||||+++.|++.+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999875
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00021 Score=68.84 Aligned_cols=24 Identities=33% Similarity=0.504 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++++|+|+||||||||+|.|.+..
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 578999999999999999999986
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.05 E-value=0.00025 Score=61.88 Aligned_cols=29 Identities=31% Similarity=0.249 Sum_probs=25.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
.+|++++|+|++||||||++++|.+.+.+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~ 31 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC 31 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 46899999999999999999999987643
|
| >3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940} | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0024 Score=58.36 Aligned_cols=74 Identities=22% Similarity=0.203 Sum_probs=45.6
Q ss_pred CCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH-hc--------cCCCcceEEEeCC--CHHHHHHHH
Q 015825 242 SPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIK-QG--------KSSGIFDHILYND--KLEECYENL 310 (399)
Q Consensus 242 ~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~-~~--------~~~~~~t~Viv~h--dleea~~~l 310 (399)
.....+.+|+..| ++.+-+|+..+.....++..+.+++..++-. .+ .....++++|-+. .++++.+.+
T Consensus 134 ~~~~~~~VfL~A~-~e~r~~Ri~~~~~~~~~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~~eevv~~I 212 (223)
T 3hdt_A 134 DIERLIRIFVYTD-KVKKVQRVMEVDCIDEERAKRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLTLEETAELI 212 (223)
T ss_dssp TCCEEEEEEEECC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCCHHHHHHHH
T ss_pred CCCCeEEEEEECC-HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCCHHHHHHHH
Confidence 3344677888765 7888888875543444566666655433211 11 1123468888776 789999888
Q ss_pred HHhhcc
Q 015825 311 KKHLGL 316 (399)
Q Consensus 311 ~~ii~~ 316 (399)
...+..
T Consensus 213 ~~~i~~ 218 (223)
T 3hdt_A 213 KAYIRL 218 (223)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776653
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0035 Score=58.27 Aligned_cols=26 Identities=35% Similarity=0.431 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++.+++|+|++||||||+.+.|...+
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L 28 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKIL 28 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 35689999999999999999998753
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00029 Score=68.13 Aligned_cols=25 Identities=28% Similarity=0.300 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+++|+|||||||||++++|.+++.
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4899999999999999999999875
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0003 Score=67.23 Aligned_cols=27 Identities=33% Similarity=0.465 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHhhhhhc-cCCccc
Q 015825 136 VVITGPSGVGKGTLISMLMKE-FPSMFG 162 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~-~~~~~g 162 (399)
++|+||||||||||+++|.+. ..+..|
T Consensus 21 I~lvG~nG~GKSTLl~~L~g~~~~~~~g 48 (301)
T 2qnr_A 21 LMVVGESGLGKSTLINSLFLTDLYPERV 48 (301)
T ss_dssp EEEEEETTSSHHHHHHHHHC--------
T ss_pred EEEECCCCCCHHHHHHHHhCCCccCCCC
Confidence 499999999999999999986 555555
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00041 Score=61.12 Aligned_cols=25 Identities=40% Similarity=0.570 Sum_probs=22.4
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
.++|+|+||||||||++.|++...+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~ 55 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFN 55 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCC
Confidence 6899999999999999999997643
|
| >3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.014 Score=52.05 Aligned_cols=71 Identities=15% Similarity=0.151 Sum_probs=43.0
Q ss_pred cceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH----hc-----cCCCcceEEEeCC--CHHHHHHHHHH
Q 015825 244 LDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIK----QG-----KSSGIFDHILYND--KLEECYENLKK 312 (399)
Q Consensus 244 ~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~----~~-----~~~~~~t~Viv~h--dleea~~~l~~ 312 (399)
...+.+|+..| ++.+-+|+..+...+.++..+.+.+...+-. .+ .....++++|-|. +++++.+.+..
T Consensus 116 ~~~~~V~L~A~-~e~r~~R~~~~~~~~~~~~~~~i~~~d~~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv~~I~~ 194 (201)
T 3fdi_A 116 PNMISAFILGD-KDTKTKRVMEREGVDEKTALNMMKKMDKMRKVYHNFYCESKWGDSRTYDICIKIGKVDVDTATDMIIK 194 (201)
T ss_dssp TTEEEEEEEEC-HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHHHHHHH
T ss_pred CCeEEEEEECC-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccCCEEEECCCCCHHHHHHHHHH
Confidence 34667777765 7888888875544455666666654433211 10 1122357887765 78999888877
Q ss_pred hhc
Q 015825 313 HLG 315 (399)
Q Consensus 313 ii~ 315 (399)
.+.
T Consensus 195 ~i~ 197 (201)
T 3fdi_A 195 YID 197 (201)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0002 Score=74.24 Aligned_cols=31 Identities=39% Similarity=0.415 Sum_probs=28.1
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
+|++++|+|+||||||||+++|++.+.+..|
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G 398 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGG 398 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCS
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCC
Confidence 6899999999999999999999999876554
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00091 Score=64.33 Aligned_cols=62 Identities=19% Similarity=0.144 Sum_probs=46.0
Q ss_pred CCceEEEEeCCCh--HHHHHHHHHhCCeEEEeccCc-c------------------------CCCCcEEEEEcCCCCCHH
Q 015825 95 SSDDCLWFLEVDT--PYVREQKKVVGAEVVAWSKGV-I------------------------GNVEKPVVITGPSGVGKG 147 (399)
Q Consensus 95 ~~~~~i~~~k~D~--~~~~~l~~~~g~~v~~~s~~~-~------------------------~~~g~~~~l~GpsG~GKS 147 (399)
.-.|+|+++|-|. +++-+..+..+.+++..+... . ...|+-+.|+|+||+|||
T Consensus 79 ~~~P~IIltrg~~~peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~~~~~~~~H~~~v~~~g~~vl~~G~sG~GKS 158 (314)
T 1ko7_A 79 PETPAIIVTRDLEPPEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHELARTTSLHGVLVDVYGVGVLITGDSGIGKS 158 (314)
T ss_dssp TTCCCEEECTTCCCCHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHHTCEEEEEESEEEEETTEEEEEEESTTSSHH
T ss_pred CCCCEEEEeCCCCCCHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHhhccceeeeEEEEEECCEEEEEEeCCCCCHH
Confidence 4578889999883 444445566788887765441 0 025899999999999999
Q ss_pred HHHhhhhhc
Q 015825 148 TLISMLMKE 156 (399)
Q Consensus 148 Tl~~~L~~~ 156 (399)
|++..|.+.
T Consensus 159 t~a~~l~~~ 167 (314)
T 1ko7_A 159 ETALELIKR 167 (314)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHHhc
Confidence 999999874
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00035 Score=66.78 Aligned_cols=32 Identities=25% Similarity=0.167 Sum_probs=28.2
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCcccc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGF 163 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~ 163 (399)
+|++++|+|||||||||++..|++.+.+..|.
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~ 135 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHK 135 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCC
Confidence 68999999999999999999999988655563
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00057 Score=62.06 Aligned_cols=26 Identities=15% Similarity=0.123 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.+|++++|+||||||||||++.|++.
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHH
Confidence 48999999999999999999999984
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00048 Score=65.57 Aligned_cols=28 Identities=18% Similarity=0.299 Sum_probs=25.5
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
++.+++|+||||||||||++.|.+.+.+
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~ 57 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLME 57 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5789999999999999999999998754
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00059 Score=60.26 Aligned_cols=23 Identities=43% Similarity=0.661 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.|++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~ 29 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNE 29 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 57999999999999999999875
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00095 Score=64.45 Aligned_cols=33 Identities=18% Similarity=0.246 Sum_probs=28.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
..++++++++||+|+||||++..|++.+.+..+
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~ 134 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGY 134 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCC
Confidence 457899999999999999999999998876544
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.78 E-value=2.1e-05 Score=86.06 Aligned_cols=87 Identities=11% Similarity=0.074 Sum_probs=69.7
Q ss_pred HHcCCcceeEEEEcCCC--hHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 239 VRASPLDAIFIFICPPS--MEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 239 l~~~~~~~~~ili~~P~--lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
..+|++..+.+|+..|+ +++||||+++||+...+.+.+.|+++.+ ...++|+++||++.+. .+++++.+
T Consensus 468 Ge~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~--------~G~TvivVtHd~~~~~-~aD~ii~l 538 (916)
T 3pih_A 468 GESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRD--------LGNTVIVVEHDEEVIR-NADHIIDI 538 (916)
T ss_dssp HHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTT--------TTCEEEEECCCHHHHH-TCSEEEEE
T ss_pred HHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHh--------cCCEEEEEeCCHHHHH-hCCEEEEE
Confidence 34555666678887666 9999999999999999999999887642 1348999999998764 59999999
Q ss_pred ------cCCeeeecCCCccccCCC
Q 015825 317 ------DGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 317 ------~~~~~~~~~~~~~~~~~p 334 (399)
.+|.++..+++.++...+
T Consensus 539 gpgag~~~G~iv~~G~~~e~~~~~ 562 (916)
T 3pih_A 539 GPGGGTNGGRVVFQGTVDELLKNP 562 (916)
T ss_dssp ESSSGGGCSEEEEEECHHHHHHSC
T ss_pred cCCcccCCCEEEEeechhhhhcCc
Confidence 889999888887776544
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00059 Score=60.58 Aligned_cols=64 Identities=23% Similarity=0.334 Sum_probs=39.3
Q ss_pred eEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC-CHHHHHHHHHHhhc
Q 015825 247 IFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKKHLG 315 (399)
Q Consensus 247 ~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h-dleea~~~l~~ii~ 315 (399)
..+++. .+.+++-+|+..|+ .+.+.+.+++......... ...++++|.|. +++++...+.+++.
T Consensus 126 ~~i~l~-~~~e~~~~Rl~~R~-~~~~~~~~~~~~~~~~~~~---~~~ad~vId~~~~~~~~~~~i~~~l~ 190 (204)
T 2if2_A 126 KLIVVY-APYEVCKERAIKRG-MSEEDFERRWKKQMPIEEK---VKYADYVIDNSGSIEETYKQVKKVYE 190 (204)
T ss_dssp EEEEEC-CCHHHHHHHHHHTC-CCHHHHHHHHTTSCCHHHH---GGGCSEECCCSSCHHHHHHHHHHHHH
T ss_pred EEEEEE-CCHHHHHHHHHHcC-CCHHHHHHHHHhCCChhHH---HhcCCEEEECCCCHHHHHHHHHHHHH
Confidence 445554 44788889998884 4556666666542211111 12346776665 88999888887664
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00072 Score=58.46 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++..++|+|++|||||||++.|.+..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999999864
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00036 Score=64.39 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=21.5
Q ss_pred EEEEcCCCCCHHHHHhhhhhccC
Q 015825 136 VVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
++|+||||||||||+++|++...
T Consensus 52 ~ll~G~~G~GKTtl~~~i~~~~~ 74 (254)
T 1ixz_A 52 VLLVGPPGVGKTHLARAVAGEAR 74 (254)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999999764
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00049 Score=61.82 Aligned_cols=32 Identities=25% Similarity=0.186 Sum_probs=27.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
.+|.+++|+|++||||||+++.|.+.+.+..|
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g 54 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRR 54 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccC
Confidence 46899999999999999999999998764444
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0013 Score=63.85 Aligned_cols=53 Identities=23% Similarity=0.240 Sum_probs=36.4
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccCCc--c------cceeeecCCCccccccCCeeEEecC
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFPSM--F------GFSVSHTTRAPRAMEKDGVHYHFTE 186 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~~~--~------g~~i~~ttr~~~~~~~~~i~yvfq~ 186 (399)
.+++|+||+|||||||.+.|+..+... . -....++|..+...+..++.+++.+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~hhl~d 68 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQGMDIGTAKVTTEEMEGIPHYMID 68 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBTTCCTTTTCCCTTTTTTCCEESSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccccccccccCCCHHHHHHHHHHHHH
Confidence 589999999999999999999876520 0 0012235555556666677777665
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=96.71 E-value=0.0008 Score=60.08 Aligned_cols=25 Identities=24% Similarity=0.122 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhh
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMK 155 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~ 155 (399)
.+|++++|+||||||||||++.|++
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4899999999999999999999998
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00077 Score=63.50 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=22.4
Q ss_pred EEEEcCCCCCHHHHHhhhhhccCC
Q 015825 136 VVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
++|.||||||||||+++|++...+
T Consensus 47 vlL~Gp~GtGKTtLakala~~~~~ 70 (274)
T 2x8a_A 47 VLLAGPPGCGKTLLAKAVANESGL 70 (274)
T ss_dssp EEEESSTTSCHHHHHHHHHHHTTC
T ss_pred EEEECCCCCcHHHHHHHHHHHcCC
Confidence 999999999999999999998765
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00047 Score=64.71 Aligned_cols=23 Identities=39% Similarity=0.634 Sum_probs=21.6
Q ss_pred EEEEcCCCCCHHHHHhhhhhccC
Q 015825 136 VVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
++|+||||||||||+++|++...
T Consensus 76 vll~Gp~GtGKTtl~~~i~~~~~ 98 (278)
T 1iy2_A 76 VLLVGPPGVGKTHLARAVAGEAR 98 (278)
T ss_dssp EEEECCTTSSHHHHHHHHHHHTT
T ss_pred EEEECCCcChHHHHHHHHHHHcC
Confidence 89999999999999999999764
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.0008 Score=58.95 Aligned_cols=29 Identities=28% Similarity=0.310 Sum_probs=26.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
.+|.+++|+|++||||||+++.|+..+..
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999999999987654
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=96.65 E-value=5.9e-05 Score=82.42 Aligned_cols=86 Identities=9% Similarity=0.054 Sum_probs=68.4
Q ss_pred HHcCCcceeEEEEcC--CChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 239 VRASPLDAIFIFICP--PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 239 l~~~~~~~~~ili~~--P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
..+|++..+.++... |.+.+||||+++||+...+.+.+.|+++++ . ..++|+++|++++. ..+|+++.+
T Consensus 508 GEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~-~-------G~TVIvVeHdl~~i-~~ADrIi~L 578 (972)
T 2r6f_A 508 GEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRD-L-------GNTLIVVEHDEDTM-LAADYLIDI 578 (972)
T ss_dssp HHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHT-T-------TCEEEEECCCHHHH-HSCSEEEEE
T ss_pred HHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHh-C-------CCEEEEEecCHHHH-HhCCEEEEe
Confidence 345556666677776 489999999999999999999999998752 1 34899999999875 578999998
Q ss_pred ------cCCeeeecCCCccccCC
Q 015825 317 ------DGSIATNHQTSPKGIDL 333 (399)
Q Consensus 317 ------~~~~~~~~~~~~~~~~~ 333 (399)
.+|.++..+++.++...
T Consensus 579 gpgaG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 579 GPGAGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp CSSSGGGCCSEEEEECTTTTTTC
T ss_pred CCCccCCCCEEEEecCHHHHHhh
Confidence 68889988888776654
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00095 Score=66.82 Aligned_cols=29 Identities=21% Similarity=0.324 Sum_probs=25.7
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSM 160 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~ 160 (399)
.|++++|+||||||||||+++|.++..+.
T Consensus 25 ~~~~~~i~G~nG~GKstll~ai~~~~~~~ 53 (430)
T 1w1w_A 25 ESNFTSIIGPNGSGKSNMMDAISFVLGVR 53 (430)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHHHHTTC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhhccc
Confidence 57999999999999999999999887653
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.60 E-value=0.0011 Score=56.56 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhh
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMK 155 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~ 155 (399)
...+.+|+|||||||||++.+|.-
T Consensus 22 ~~g~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 22 KEGINLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHH
Confidence 356899999999999999999874
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00091 Score=58.79 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+++|+|+||||||||++.|.+.+.
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 5899999999999999999998764
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=96.59 E-value=0.00081 Score=64.53 Aligned_cols=32 Identities=25% Similarity=0.236 Sum_probs=27.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
.++++++|+|||||||||++..|++.+.+..+
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~ 133 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGK 133 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCC
Confidence 46899999999999999999999998865433
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=96.58 E-value=0.001 Score=65.67 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=25.4
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..+|++++|+||||||||||+++|++..
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3578999999999999999999999865
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0011 Score=56.62 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..++|+|++|||||||++.|.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999864
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0013 Score=57.61 Aligned_cols=26 Identities=31% Similarity=0.523 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.++..++|+|++||||||+.+.|+..
T Consensus 8 ~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 8 PKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 36789999999999999999999886
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0011 Score=64.75 Aligned_cols=29 Identities=31% Similarity=0.487 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSM 160 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~ 160 (399)
.+.+++|+|++|||||||+|.|.+...+.
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~~~~ 101 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKMLTER 101 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhhhc
Confidence 46789999999999999999999876544
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0009 Score=64.71 Aligned_cols=25 Identities=36% Similarity=0.703 Sum_probs=23.1
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
...++|.||||+|||||+++|++..
T Consensus 51 ~~~~ll~Gp~G~GKTTLa~~ia~~l 75 (334)
T 1in4_A 51 LDHVLLAGPPGLGKTTLAHIIASEL 75 (334)
T ss_dssp CCCEEEESSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3679999999999999999999987
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0012 Score=57.49 Aligned_cols=27 Identities=33% Similarity=0.411 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..++.++|+|++||||||+.+.|+..+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998754
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0018 Score=64.92 Aligned_cols=68 Identities=18% Similarity=0.129 Sum_probs=44.7
Q ss_pred hccCCCceEEEEeCCCh-HHHHHHH--HHhCC-eEEEeccC-ccC-----------C----------CCcEEEEEcCCCC
Q 015825 91 KKGSSSDDCLWFLEVDT-PYVREQK--KVVGA-EVVAWSKG-VIG-----------N----------VEKPVVITGPSGV 144 (399)
Q Consensus 91 ~~~~~~~~~i~~~k~D~-~~~~~l~--~~~g~-~v~~~s~~-~~~-----------~----------~g~~~~l~GpsG~ 144 (399)
....+.+.+++.||+|. +...... ..+|. +++.+|+. ..+ + ....++++|.+||
T Consensus 107 l~~~~~pvilv~NK~D~~~~~~~~~~~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~lvG~~nv 186 (436)
T 2hjg_A 107 LYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNV 186 (436)
T ss_dssp HTTCCSCEEEEEECCCC-----CCCSSGGGSSCCCEECBTTTTBTHHHHHHHHHHTGGGCCSSCCCTTCEEEEEECSTTS
T ss_pred HHHcCCCEEEEEECccCccchhhHHHHHHcCCCCeEEEeCcCCCChHHHHHHHHHhcCccccccccccCcEEEEEcCCCC
Confidence 34568889999999994 2111110 23454 66777765 211 1 1236899999999
Q ss_pred CHHHHHhhhhhccC
Q 015825 145 GKGTLISMLMKEFP 158 (399)
Q Consensus 145 GKSTl~~~L~~~~~ 158 (399)
|||||++.|.+...
T Consensus 187 GKSSLin~l~~~~~ 200 (436)
T 2hjg_A 187 GKSSLVNAMLGEER 200 (436)
T ss_dssp SHHHHHHHHHTSTT
T ss_pred CHHHHHHHHhCCCc
Confidence 99999999998654
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0014 Score=56.80 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+||+||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998865
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0015 Score=56.91 Aligned_cols=23 Identities=43% Similarity=0.651 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.+++..
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~ 26 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTK 26 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999999864
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0018 Score=58.16 Aligned_cols=64 Identities=13% Similarity=0.124 Sum_probs=38.0
Q ss_pred eEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC-CHHHHHHHHHHhh
Q 015825 247 IFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKKHL 314 (399)
Q Consensus 247 ~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h-dleea~~~l~~ii 314 (399)
.++++.. +.+++-+|+..|+..+.+.+.+++......... ...++++|.|. +++++...+.+++
T Consensus 128 ~vi~l~~-~~e~~~~Rl~~R~~~~~~~~~~~~~~~~~~~~~---~~~ad~vId~~~~~~~~~~~I~~~l 192 (218)
T 1vht_A 128 RVLVVDV-SPETQLKRTMQRDDVTREHVEQILAAQATREAR---LAVADDVIDNNGAPDAIASDVARLH 192 (218)
T ss_dssp EEEEEEC-CHHHHHHHHHHHHTCCHHHHHHHHHHSCCHHHH---HHHCSEEEECSSCTTSHHHHHHHHH
T ss_pred EEEEEEC-CHHHHHHHHHHcCCCCHHHHHHHHHhcCChHHH---HHhCCEEEECCCCHHHHHHHHHHHH
Confidence 4555554 478888999887656667777776541111110 11346777665 6777777666654
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0012 Score=61.05 Aligned_cols=28 Identities=32% Similarity=0.519 Sum_probs=25.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
..+..++|+|||||||||+.+.|...+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4678999999999999999999998764
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0015 Score=56.72 Aligned_cols=26 Identities=31% Similarity=0.427 Sum_probs=18.9
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++.+++|.|++||||||+.+.|...+
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 56789999999999999999998765
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0024 Score=58.29 Aligned_cols=29 Identities=21% Similarity=0.283 Sum_probs=24.0
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
-.++|+|++|||||||++.|.+......+
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred eEEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 46899999999999999999997654443
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0019 Score=55.85 Aligned_cols=24 Identities=29% Similarity=0.494 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
...++|+|++|||||||++.|++.
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999985
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0022 Score=56.51 Aligned_cols=65 Identities=25% Similarity=0.283 Sum_probs=39.5
Q ss_pred eEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC-CHHHHHHHHHHhhc
Q 015825 247 IFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKKHLG 315 (399)
Q Consensus 247 ~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h-dleea~~~l~~ii~ 315 (399)
.++++. .+.+.+-+|+..|+..+.+.+.+++......... ...+++++.+. +++++.+.+.+++.
T Consensus 127 ~~i~l~-~~~e~~~~R~~~R~~~~~~~~~~~i~~~~~~~~~---~~~ad~vId~~~~~~~~~~~i~~~~~ 192 (203)
T 1uf9_A 127 GTLLVA-APLEERVRRVMARSGLSREEVLARERAQMPEEEK---RKRATWVLENTGSLEDLERALKAVLA 192 (203)
T ss_dssp EEEEEC-CCHHHHHHHHHTTTCCTTHHHHHHHTTSCCHHHH---HHHCSEEECCSSHHHHHHHHHHHHHH
T ss_pred EEEEEE-CCHHHHHHHHHHcCCCCHHHHHHHHHHCCChhHH---HHhCCEEEECCCCHHHHHHHHHHHHH
Confidence 455555 4578888999888655556666666542111110 11346777666 68888888877664
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0021 Score=66.54 Aligned_cols=31 Identities=29% Similarity=0.476 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
+|+.++|+||||||||||+++|++...+.++
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~ 137 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFV 137 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 7899999999999999999999998876665
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=96.20 E-value=0.0019 Score=63.42 Aligned_cols=64 Identities=6% Similarity=-0.079 Sum_probs=49.4
Q ss_pred cCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccc
Q 015825 252 CPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKG 330 (399)
Q Consensus 252 ~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~ 330 (399)
..|++++||||++++|+..+..+.+.+..+. .++|+++|. +. .+++++.+.+|.+...+++.++
T Consensus 291 ~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~-----------qt~i~~th~-~~---~~~~i~~l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 291 GEDPVLLLDDFTAELDPHRRQYLLDLAASVP-----------QAIVTGTEL-AP---GAALTLRAQAGRFTPVADEEMQ 354 (359)
T ss_dssp SSCCEEEECCGGGCCCHHHHHHHHHHHHHSS-----------EEEEEESSC-CT---TCSEEEEEETTEEEECCCTTTS
T ss_pred CCCCEEEEeCccccCCHHHHHHHHHHHHhcC-----------cEEEEEEec-cc---cCCEEEEEECCEEEecCCHHHH
Confidence 6889999999999999988888888776531 277888884 33 5677888888888877766544
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.19 E-value=0.0025 Score=58.14 Aligned_cols=27 Identities=30% Similarity=0.580 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++.+++|+|++||||||+.+.|++.+
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~l 40 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDF 40 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 478899999999999999999999854
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0022 Score=59.00 Aligned_cols=26 Identities=27% Similarity=0.482 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+.+++|.|||||||||+.+.|+..+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34689999999999999999998654
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0049 Score=64.49 Aligned_cols=34 Identities=21% Similarity=0.326 Sum_probs=29.0
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCccccee
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSV 165 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i 165 (399)
.|+.++|+||||+|||||+++|++..++..+..+
T Consensus 59 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~ 92 (604)
T 3k1j_A 59 QKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDI 92 (604)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEE
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeE
Confidence 6789999999999999999999999877653243
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.00017 Score=78.16 Aligned_cols=85 Identities=12% Similarity=0.054 Sum_probs=66.6
Q ss_pred cCCcceeEEEEcCC--ChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc--
Q 015825 241 ASPLDAIFIFICPP--SMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL-- 316 (399)
Q Consensus 241 ~~~~~~~~ili~~P--~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~-- 316 (399)
+|++..+.+|...| .+.+||||+++||+...+.+.+.++++.+. ..++|+++|+++ .+..+++++.+
T Consensus 385 ~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~--------G~TVIvVeHdl~-~l~~aD~ii~lgp 455 (842)
T 2vf7_A 385 LQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRG--------GNSLFVVEHDLD-VIRRADWLVDVGP 455 (842)
T ss_dssp HHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTT--------TCEEEEECCCHH-HHTTCSEEEEECS
T ss_pred HHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHc--------CCEEEEEcCCHH-HHHhCCEEEEeCC
Confidence 34444555777777 499999999999999999999999887531 348999999998 45678999999
Q ss_pred ----cCCeeeecCCCccccCCC
Q 015825 317 ----DGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 317 ----~~~~~~~~~~~~~~~~~p 334 (399)
.+|.++..+++.++...+
T Consensus 456 gaG~~~G~iv~~g~~~~~~~~~ 477 (842)
T 2vf7_A 456 EAGEKGGEILYSGPPEGLKHVP 477 (842)
T ss_dssp SSGGGCCSEEEEECGGGGGGCT
T ss_pred CcccCCCEEEEecCHHHHHhch
Confidence 688888888877766543
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=96.12 E-value=0.002 Score=61.45 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+...++|+|++|||||||++.|.+..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~ 32 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK 32 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 45589999999999999999999864
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0025 Score=60.73 Aligned_cols=31 Identities=19% Similarity=0.120 Sum_probs=27.7
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
+|++++++|++|+||||++..|++.+.+..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~ 127 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGR 127 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 7899999999999999999999998865444
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0026 Score=55.61 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+++|+|+||||||||+..|++.+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~ 29 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAV 29 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhH
Confidence 5799999999999999999998764
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=96.07 E-value=0.0032 Score=62.66 Aligned_cols=29 Identities=21% Similarity=0.227 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhh--hccCC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLM--KEFPS 159 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~--~~~~~ 159 (399)
.+|+++.|+||||||||||++.|+ ...++
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~ 206 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPL 206 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCG
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCc
Confidence 489999999999999999999654 44544
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0032 Score=56.41 Aligned_cols=24 Identities=29% Similarity=0.505 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhh
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMK 155 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~ 155 (399)
...+.+|+|||||||||++.+|.-
T Consensus 22 ~~~~~~I~G~NgsGKStil~ai~~ 45 (203)
T 3qks_A 22 KEGINLIIGQNGSGKSSLLDAILV 45 (203)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHH
Confidence 456999999999999999999864
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.0024 Score=63.91 Aligned_cols=28 Identities=21% Similarity=0.411 Sum_probs=25.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
..+..++|+|+||||||||+++|++..+
T Consensus 155 k~g~~VgLVG~~gAGKSTLL~~Lsg~~~ 182 (416)
T 1udx_A 155 MLIADVGLVGYPNAGKSSLLAAMTRAHP 182 (416)
T ss_dssp CCSCSEEEECCGGGCHHHHHHHHCSSCC
T ss_pred cCCCEEEEECCCCCcHHHHHHHHHcCCc
Confidence 4678999999999999999999999754
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=95.92 E-value=0.0041 Score=56.32 Aligned_cols=26 Identities=19% Similarity=0.358 Sum_probs=22.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.+|++++|+||||+|||||+..++..
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~ 46 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWN 46 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999997666543
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0038 Score=60.47 Aligned_cols=60 Identities=13% Similarity=0.102 Sum_probs=44.8
Q ss_pred EEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 249 IFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 249 ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
+++.+|++++||||++++|+.....+.+.+..+..+ ..++++++|+. +....+++++.+.
T Consensus 268 ~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~--------~~~vi~~sH~~-~~~~~~d~~~~l~ 327 (339)
T 3qkt_A 268 YLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK--------IPQVILVSHDE-ELKDAADHVIRIS 327 (339)
T ss_dssp HTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGG--------SSEEEEEESCG-GGGGGCSEEEEEE
T ss_pred HhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhc--------CCEEEEEEChH-HHHHhCCEEEEEE
Confidence 556789999999999999998888888887764321 23788999994 4555666655543
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=95.89 E-value=0.0029 Score=61.40 Aligned_cols=29 Identities=21% Similarity=0.272 Sum_probs=25.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
.++.+++++|++|+|||||++.|++.+.+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~~~ 82 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLLIR 82 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 47889999999999999999999987654
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0037 Score=55.22 Aligned_cols=66 Identities=17% Similarity=0.161 Sum_probs=38.5
Q ss_pred eEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcce-EEEeCC--CHHHHHHHHHHhh
Q 015825 247 IFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFD-HILYND--KLEECYENLKKHL 314 (399)
Q Consensus 247 ~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t-~Viv~h--dleea~~~l~~ii 314 (399)
..+++..| .+++-+|+..++..+.+++.+++..-........ ....+ ++|.|. +++++.+.+.+++
T Consensus 138 ~~i~l~a~-~e~~~~R~~~r~~~~~~~~~~~~~~R~~~~~~~~-~~~ad~~~Id~~~~~~ee~~~~I~~~~ 206 (208)
T 3ake_A 138 HKFYLTAS-PEVRAWRRARERPQAYEEVLRDLLRRDERDKAQS-APAPDALVLDTGGMTLDEVVAWVLAHI 206 (208)
T ss_dssp EEEEEECC-HHHHHHHHHHTSSSCHHHHHHHHHHHHHTC--CC-CCCTTCEEEETTTSCHHHHHHHHHHHH
T ss_pred EEEEEECC-HHHHHHHHHhhcccCHHHHHHHHHHHHHHHhhcc-cCCCCEEEEECCCCCHHHHHHHHHHHH
Confidence 45555544 6777888887765566667666664211100000 22345 666665 7999988887654
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.01 Score=59.77 Aligned_cols=68 Identities=18% Similarity=0.151 Sum_probs=41.5
Q ss_pred hccCCCceEEEEeCCChH-HHHHHH--HHhCC-eEEEeccC-ccC---------------------CCCcEEEEEcCCCC
Q 015825 91 KKGSSSDDCLWFLEVDTP-YVREQK--KVVGA-EVVAWSKG-VIG---------------------NVEKPVVITGPSGV 144 (399)
Q Consensus 91 ~~~~~~~~~i~~~k~D~~-~~~~l~--~~~g~-~v~~~s~~-~~~---------------------~~g~~~~l~GpsG~ 144 (399)
....+.+.+++.||+|.. ...... ..+|. +.+.+|+. ..+ .....++++|.+|+
T Consensus 127 l~~~~~pvilV~NK~D~~~~~~~~~e~~~lg~~~~~~iSA~~g~gv~~L~~~i~~~l~~~~~~~~~~~~~ki~ivG~~~v 206 (456)
T 4dcu_A 127 LYRTKKPVVLAVNKLDNTEMRANIYDFYSLGFGEPYPISGTHGLGLGDLLDAVAEHFKNIPETKYNEEVIQFCLIGRPNV 206 (456)
T ss_dssp HTTCCSCEEEEEECC---------CCSGGGSSSSEEECCTTTCTTHHHHHHHHHTTGGGSCSSCCCTTCEEEEEECSTTS
T ss_pred HHHcCCCEEEEEECccchhhhhhHHHHHHcCCCceEEeecccccchHHHHHHHHhhcccccccccccccceeEEecCCCC
Confidence 445688899999999942 111111 22332 45566654 111 12345899999999
Q ss_pred CHHHHHhhhhhccC
Q 015825 145 GKGTLISMLMKEFP 158 (399)
Q Consensus 145 GKSTl~~~L~~~~~ 158 (399)
|||||++.|.+...
T Consensus 207 GKSslin~l~~~~~ 220 (456)
T 4dcu_A 207 GKSSLVNAMLGEER 220 (456)
T ss_dssp SHHHHHHHHHTSTT
T ss_pred CHHHHHHHHhCCCc
Confidence 99999999997643
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0028 Score=60.14 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=19.9
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++.+++|.|||||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998754
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.70 E-value=0.0049 Score=59.33 Aligned_cols=27 Identities=30% Similarity=0.442 Sum_probs=23.6
Q ss_pred EEEEcCCCCCHHHHHhhhhh-ccCCccc
Q 015825 136 VVITGPSGVGKGTLISMLMK-EFPSMFG 162 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~-~~~~~~g 162 (399)
+.|.||+|+||||+++.|++ +..+..|
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l~~~~~g 66 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESIFGPGVY 66 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHHSCTTCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHcCCCCC
Confidence 89999999999999999999 5665555
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=95.68 E-value=0.005 Score=51.75 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.68 E-value=0.005 Score=53.48 Aligned_cols=26 Identities=27% Similarity=0.638 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..-.++++|++|||||||++.|.+..
T Consensus 47 ~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 47 YQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578999999999999999999864
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.67 E-value=0.0051 Score=52.21 Aligned_cols=23 Identities=39% Similarity=0.593 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 48999999999999999998754
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0054 Score=51.26 Aligned_cols=23 Identities=43% Similarity=0.638 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999864
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0054 Score=51.32 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.+.+..
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~~ 27 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTGT 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998653
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=95.63 E-value=0.0046 Score=52.09 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 47999999999999999998754
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.63 E-value=0.005 Score=57.43 Aligned_cols=24 Identities=33% Similarity=0.432 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..++|+|++|||||||++.|.+..
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~~ 27 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGLR 27 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTTC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999864
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=95.60 E-value=0.0052 Score=51.27 Aligned_cols=23 Identities=35% Similarity=0.655 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 47999999999999999998753
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0063 Score=56.07 Aligned_cols=26 Identities=12% Similarity=0.257 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
..+++|.|++||||||+.+.|...+.
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg 47 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLG 47 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 35799999999999999999988543
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.57 E-value=0.006 Score=51.40 Aligned_cols=22 Identities=36% Similarity=0.634 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.++++|++|||||||++.|.+.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=95.57 E-value=0.0076 Score=51.32 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+...++++|++|||||||++.|.+..
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~~ 32 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHSK 32 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 45678999999999999999998753
|
| >2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.019 Score=59.31 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+.+++|+|++||||||+.+.|...+
T Consensus 371 ~~~~I~l~G~~GsGKSTia~~La~~L 396 (546)
T 2gks_A 371 QGFCVWLTGLPCAGKSTIAEILATML 396 (546)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEccCCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999998754
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0061 Score=51.05 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++++|++|||||||++.|.+..
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~~ 28 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYDE 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCc
Confidence 358999999999999999998753
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.54 E-value=0.0061 Score=54.25 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
...+++|+|++||||||+.+.|...
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHh
Confidence 3568999999999999999999876
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0062 Score=51.20 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998754
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0061 Score=51.46 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 37899999999999999998654
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.00012 Score=62.82 Aligned_cols=59 Identities=14% Similarity=0.101 Sum_probs=45.5
Q ss_pred EEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 249 IFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 249 ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
+++.+|++++||||++++|+.+...+.+.+..+..+ ..++++++|+. +....+++++.+
T Consensus 77 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~--------~~tiiivsH~~-~~~~~~d~ii~l 135 (148)
T 1f2t_B 77 YLAGEISLLILDEPTPYLDEERRRKLITIMERYLKK--------IPQVILVSHDE-ELKDAADHVIRI 135 (148)
T ss_dssp HHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGG--------SSEEEEEESCG-GGGGGCSEEEEE
T ss_pred HHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHcc--------CCEEEEEEChH-HHHHhCCEEEEE
Confidence 566789999999999999998888888888764321 23788999997 455556666665
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=95.51 E-value=0.0065 Score=51.23 Aligned_cols=23 Identities=30% Similarity=0.392 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.+.+..
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~~ 30 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCENK 30 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 57999999999999999998753
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0065 Score=51.17 Aligned_cols=23 Identities=26% Similarity=0.557 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0072 Score=55.57 Aligned_cols=26 Identities=35% Similarity=0.535 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+.+.|.||+|+||||++++|++...
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~ 70 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAK 70 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 35689999999999999999998764
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0065 Score=51.72 Aligned_cols=23 Identities=30% Similarity=0.586 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47999999999999999998753
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0059 Score=51.42 Aligned_cols=23 Identities=30% Similarity=0.618 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 47999999999999999998753
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0065 Score=51.78 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999998754
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0063 Score=51.81 Aligned_cols=23 Identities=35% Similarity=0.576 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47999999999999999998753
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=95.47 E-value=0.0067 Score=50.93 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=20.1
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.++++|++|||||||++.|.+.
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4799999999999999999874
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0079 Score=51.97 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..++++|++|||||||++.|.+..
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 468999999999999999998865
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0077 Score=54.09 Aligned_cols=27 Identities=37% Similarity=0.342 Sum_probs=24.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..|+.++|+||||+|||||+..|+...
T Consensus 32 ~~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 32 IYGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp ETTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred ECCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 468899999999999999999998754
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=95.41 E-value=0.0067 Score=51.67 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
-.++++|++|||||||++.|.+.
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45899999999999999999875
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0072 Score=52.32 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 58999999999999999999864
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0076 Score=50.66 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.++++|++|||||||++.|.+.
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999864
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0065 Score=52.63 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.-.++++|++|||||||++.|.+.
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999875
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=95.35 E-value=0.0066 Score=52.73 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..-.++++|++|||||||++.|.+..
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568999999999999999998753
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0091 Score=53.48 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+..+.|.||+|+||||+++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999999999987653
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0079 Score=51.67 Aligned_cols=23 Identities=35% Similarity=0.657 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 47999999999999999998754
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.32 E-value=0.009 Score=56.64 Aligned_cols=28 Identities=32% Similarity=0.495 Sum_probs=24.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
..++.+.|.||+|+||||++++|+....
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 3578899999999999999999998763
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=95.32 E-value=0.008 Score=50.42 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.+.+..
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~~ 24 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLGE 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998653
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0067 Score=58.40 Aligned_cols=23 Identities=35% Similarity=0.618 Sum_probs=21.3
Q ss_pred EEEEcCCCCCHHHHHhhhhhccC
Q 015825 136 VVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
+.|.||+|+||||+++++++.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999999998764
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=95.31 E-value=0.0079 Score=51.78 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.++|+|++|||||||++.|.+.
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0082 Score=50.65 Aligned_cols=24 Identities=29% Similarity=0.371 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++++|++|||||||++.|.+..
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~~ 31 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVGE 31 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999997643
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0083 Score=58.67 Aligned_cols=32 Identities=31% Similarity=0.257 Sum_probs=26.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
.+|+++.|.||+|||||||+..++.......+
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg 90 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGG 90 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCC
Confidence 37899999999999999999999887644333
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.28 E-value=0.0082 Score=52.17 Aligned_cols=23 Identities=43% Similarity=0.642 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0091 Score=55.31 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=24.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.++.+++|.|+.||||||+++.|...+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4678999999999999999999998763
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=95.27 E-value=0.01 Score=50.71 Aligned_cols=26 Identities=27% Similarity=0.507 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+..+.|.||+|+||||+++.++..+
T Consensus 42 ~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 42 TKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHH
Confidence 35678999999999999999998765
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0089 Score=50.89 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEEECcCCCCHHHHHHHHHhCc
Confidence 58999999999999999998754
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.25 E-value=0.0072 Score=52.08 Aligned_cols=23 Identities=39% Similarity=0.535 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 47899999999999999998764
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=95.25 E-value=0.011 Score=56.32 Aligned_cols=24 Identities=38% Similarity=0.439 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..++|+|.+|||||||+|.|.+..
T Consensus 8 g~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 8 GFVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 368999999999999999999864
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=95.24 E-value=0.0097 Score=57.92 Aligned_cols=22 Identities=14% Similarity=0.468 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.++++|++|||||||++.|.|.
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 8999999999999999999994
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.0064 Score=53.62 Aligned_cols=23 Identities=35% Similarity=0.528 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
-.++++|++|||||||++.+.+.
T Consensus 26 ~ki~lvG~~~vGKSsLi~~l~~~ 48 (198)
T 1f6b_A 26 GKLVFLGLDNAGKTTLLHMLKDD 48 (198)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999864
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.012 Score=56.20 Aligned_cols=25 Identities=36% Similarity=0.429 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
--+++|+|.+|||||||+|.|.+..
T Consensus 10 ~g~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 10 VGYVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3478999999999999999999864
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.0083 Score=50.97 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
-.++++|++|||||||++.|.+.
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.20 E-value=0.0065 Score=52.11 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhh
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMK 155 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~ 155 (399)
+.-.++++|++|||||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345789999999999999999985
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=95.20 E-value=0.0082 Score=58.86 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccC
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.++|+|++|||||||+|.|.+...
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~ 204 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQ 204 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCCc
Confidence 489999999999999999998754
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.18 E-value=0.0094 Score=51.83 Aligned_cols=23 Identities=26% Similarity=0.328 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
-.++|+|++|||||||++.+.+.
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999888764
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=95.18 E-value=0.0098 Score=54.28 Aligned_cols=27 Identities=33% Similarity=0.623 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
+|.+++|.|+.||||||+++.|...++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 367899999999999999999998764
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=95.17 E-value=0.0094 Score=55.96 Aligned_cols=24 Identities=17% Similarity=0.387 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..++|+|++|||||||++.|.+..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 358999999999999999999864
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=95.16 E-value=0.01 Score=51.29 Aligned_cols=25 Identities=28% Similarity=0.460 Sum_probs=22.0
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
.++|+|++|||||||++.|.+....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 5899999999999999999887654
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.16 E-value=0.0094 Score=50.82 Aligned_cols=23 Identities=35% Similarity=0.517 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998754
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.0086 Score=52.30 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.-.++++|++|||||||++.+.+..
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~~ 47 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKNDR 47 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHSC
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998753
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.0095 Score=51.52 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++++|++|||||||++.|.+..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~~ 45 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQNH 45 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSS
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 468999999999999999998753
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.14 E-value=0.0087 Score=52.65 Aligned_cols=24 Identities=38% Similarity=0.416 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++|+|++|||||||++.+.+..
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEEECCCCCCHHHHHHHHHhcc
Confidence 358999999999999999997653
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.0098 Score=50.49 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++++|++|||||||++.|.+..
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999998754
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.0099 Score=50.85 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++++|++|||||||++.|.+..
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~~ 42 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYDE 42 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhhCC
Confidence 468999999999999999998753
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=95.11 E-value=0.01 Score=50.60 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=95.09 E-value=0.012 Score=55.30 Aligned_cols=27 Identities=30% Similarity=0.459 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.++.+.|.||+|+||||+++++++...
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~ 79 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECS 79 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTT
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 567899999999999999999998764
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.07 E-value=0.01 Score=52.75 Aligned_cols=24 Identities=29% Similarity=0.682 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++|+|++|+|||||++.|.+..
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998864
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=95.05 E-value=0.0097 Score=51.11 Aligned_cols=23 Identities=22% Similarity=0.524 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=95.03 E-value=0.012 Score=51.74 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..+.|.||+|+|||||++.|+...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 789999999999999999998765
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=95.03 E-value=0.011 Score=51.92 Aligned_cols=22 Identities=41% Similarity=0.637 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.++|+|.+|||||||++.+.+.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999999874
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.02 E-value=0.0098 Score=58.08 Aligned_cols=28 Identities=25% Similarity=0.387 Sum_probs=23.7
Q ss_pred CCcE--EEEEcCCCCCHHHHHhhhhhccCC
Q 015825 132 VEKP--VVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 132 ~g~~--~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
+|+. ++|+||+||||||+.++|++.+..
T Consensus 21 ~g~~~~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 21 DNYRVCVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp TCSCEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cCCeeEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 4555 999999999999999999987643
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=95.01 E-value=0.011 Score=52.74 Aligned_cols=25 Identities=24% Similarity=0.518 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+.+++|+|++||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4679999999999999999998865
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=94.98 E-value=0.011 Score=51.16 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.|.+..
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.98 E-value=0.011 Score=51.63 Aligned_cols=24 Identities=33% Similarity=0.563 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++|+|++|||||||++.|.+..
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~~ 38 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYDE 38 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998653
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.97 E-value=0.011 Score=51.12 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.|.+..
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998754
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.012 Score=50.78 Aligned_cols=26 Identities=23% Similarity=0.284 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+.-.++++|++|||||||++.+.+..
T Consensus 17 ~~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 17 RELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568999999999999999998754
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.011 Score=51.14 Aligned_cols=23 Identities=30% Similarity=0.580 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~~ 31 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKDC 31 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 57999999999999999998753
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=94.94 E-value=0.012 Score=50.39 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.++++|++|||||||++.+.+.
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5799999999999999999864
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=94.94 E-value=0.012 Score=50.50 Aligned_cols=23 Identities=30% Similarity=0.575 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
-.++|+|++|||||||++.|.+.
T Consensus 19 ~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 19 YKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 45799999999999999999865
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=94.92 E-value=0.012 Score=51.53 Aligned_cols=24 Identities=38% Similarity=0.577 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++|+|++|||||||++.|.+..
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 358999999999999999998754
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=94.91 E-value=0.012 Score=50.91 Aligned_cols=24 Identities=25% Similarity=0.299 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++|+|++|||||||++.|.+..
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~~ 44 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAGR 44 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCCHHHHHHHHHcCC
Confidence 458999999999999999998643
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.012 Score=54.56 Aligned_cols=23 Identities=26% Similarity=0.393 Sum_probs=21.1
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||+|.|.|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999864
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.89 E-value=0.012 Score=51.36 Aligned_cols=23 Identities=26% Similarity=0.658 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=94.88 E-value=0.011 Score=56.15 Aligned_cols=29 Identities=21% Similarity=0.305 Sum_probs=25.8
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSM 160 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~ 160 (399)
++++++++|++|+||||++..|++.+...
T Consensus 97 ~~~vi~i~G~~G~GKTT~~~~la~~~~~~ 125 (297)
T 1j8m_F 97 IPYVIMLVGVQGTGKTTTAGKLAYFYKKK 125 (297)
T ss_dssp SSEEEEEECSSCSSTTHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 38899999999999999999999887653
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=94.87 E-value=0.016 Score=58.03 Aligned_cols=31 Identities=19% Similarity=0.120 Sum_probs=27.3
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
++++++++|++||||||++..|++.+....+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~ 127 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGR 127 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 6889999999999999999999998866433
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.85 E-value=0.012 Score=51.11 Aligned_cols=23 Identities=39% Similarity=0.624 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
-.++++|++|||||||++.|.+.
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCcHHHHHHHHHcC
Confidence 45899999999999999999874
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.85 E-value=0.013 Score=51.32 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=94.83 E-value=0.013 Score=50.91 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.|.+..
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.011 Score=51.16 Aligned_cols=26 Identities=31% Similarity=0.293 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+.-.++++|++|||||||++.|.+..
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCGG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcCC
Confidence 34468999999999999999998764
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.013 Score=52.78 Aligned_cols=26 Identities=19% Similarity=0.561 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
....++|+|++|||||||++.|.+..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTTTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34568999999999999999998753
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=94.83 E-value=0.013 Score=52.14 Aligned_cols=24 Identities=33% Similarity=0.440 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..++|+|++|||||||++.|++..
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998764
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=94.81 E-value=0.013 Score=50.90 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
....++|+|++|||||||++.|.+..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 45578999999999999999998754
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=94.81 E-value=0.012 Score=50.26 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.++|+|++|||||||++.|.+.
T Consensus 8 ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999854
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.80 E-value=0.012 Score=51.22 Aligned_cols=23 Identities=35% Similarity=0.640 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|++|||||||++.|.+..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC--
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48999999999999999998753
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.80 E-value=0.012 Score=51.05 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.|.+..
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=94.80 E-value=0.011 Score=55.08 Aligned_cols=23 Identities=39% Similarity=0.615 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|.+|+|||||+|.|.+..
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48999999999999999987653
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=94.78 E-value=0.014 Score=53.76 Aligned_cols=25 Identities=20% Similarity=0.470 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
...++|+|++|||||||++.|.+..
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred ceEEEEECCCCCCHHHHHHHHhCCC
Confidence 3568999999999999999999754
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=94.77 E-value=0.014 Score=49.83 Aligned_cols=24 Identities=25% Similarity=0.284 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++++|++|||||||++.+.+..
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 458999999999999999998643
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.013 Score=51.53 Aligned_cols=25 Identities=32% Similarity=0.347 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.-.++|+|++|||||||++.|.+..
T Consensus 24 ~~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 24 YRKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHSC
T ss_pred cEEEEEECCCCcCHHHHHHHHHhCC
Confidence 3458999999999999999998754
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.013 Score=50.17 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+..+.|.||+|+||||+++.++...
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999998765
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.77 E-value=0.013 Score=58.01 Aligned_cols=27 Identities=26% Similarity=0.374 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..+..++|+|++|||||||+|+|.+..
T Consensus 20 ~~~~kvgIVG~pnvGKSTL~n~Ltg~~ 46 (396)
T 2ohf_A 20 GTSLKIGIVGLPNVGKSTFFNVLTNSQ 46 (396)
T ss_dssp SSCCCEEEECCSSSSHHHHHHHHHC--
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 356789999999999999999999863
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=94.76 E-value=0.014 Score=56.74 Aligned_cols=26 Identities=38% Similarity=0.451 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
....++++|++|||||||++.|++..
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~ 191 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAK 191 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 44579999999999999999999865
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=94.75 E-value=0.011 Score=50.53 Aligned_cols=24 Identities=21% Similarity=0.299 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++++|++|||||||++.+.+..
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~~ 31 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTGS 31 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHhCC
Confidence 358999999999999999998753
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.74 E-value=0.014 Score=50.86 Aligned_cols=25 Identities=32% Similarity=0.533 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.-.++++|++|||||||++.|.+..
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~~ 52 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTKR 52 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468999999999999999998753
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.74 E-value=0.014 Score=50.37 Aligned_cols=24 Identities=33% Similarity=0.570 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++|+|++|||||||++.|.+..
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCC
Confidence 368999999999999999998753
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.014 Score=50.59 Aligned_cols=24 Identities=17% Similarity=0.277 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++|+|++|||||||++.|.+..
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~~ 46 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASGQ 46 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHcCC
Confidence 358999999999999999998653
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.0098 Score=60.81 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccC
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
-+.|+||+|+|||||+++|++...
T Consensus 66 GvLL~GppGtGKTtLaraIa~~~~ 89 (499)
T 2dhr_A 66 GVLLVGPPGVGKTHLARAVAGEAR 89 (499)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999999764
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.72 E-value=0.015 Score=50.58 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++++|++|||||||++.+.+..
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~~ 45 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTKR 45 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEECCCCCcHHHHHHHHHhCC
Confidence 358999999999999999998653
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=94.70 E-value=0.013 Score=51.42 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.|.+..
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.015 Score=51.00 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.-.++|+|++|||||||++.|.+..
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHCC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhCC
Confidence 3568999999999999999998754
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.70 E-value=0.012 Score=57.62 Aligned_cols=23 Identities=39% Similarity=0.580 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHhhhhhccC
Q 015825 136 VVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
++++|++|+|||||++.|.+...
T Consensus 40 I~vvG~~g~GKSTLln~L~~~~~ 62 (361)
T 2qag_A 40 LMVVGESGLGKSTLINSLFLTDL 62 (361)
T ss_dssp EEECCCTTSCHHHHHHHHTTCCC
T ss_pred EEEEcCCCCCHHHHHHHHhCCCC
Confidence 69999999999999999877643
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=94.67 E-value=0.015 Score=50.55 Aligned_cols=24 Identities=29% Similarity=0.396 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++++|++|||||||++.+.+..
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHhcCC
Confidence 358999999999999999998754
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.66 E-value=0.014 Score=51.74 Aligned_cols=23 Identities=30% Similarity=0.615 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.|.+..
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~~ 50 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQGL 50 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=94.66 E-value=0.021 Score=55.88 Aligned_cols=25 Identities=36% Similarity=0.319 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+..++|+|.+|||||||+|+|.+..
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~ 26 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAG 26 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC
Confidence 3568999999999999999999854
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.66 E-value=0.015 Score=51.13 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.-.++|+|++|||||||++.|.+..
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 3468999999999999999998653
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.65 E-value=0.014 Score=51.35 Aligned_cols=23 Identities=22% Similarity=0.538 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.|.+..
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 58999999999999999998653
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=94.65 E-value=0.012 Score=59.16 Aligned_cols=28 Identities=21% Similarity=0.281 Sum_probs=25.1
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
++.+++++||+||||||++..|+..+..
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 5789999999999999999999987754
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.64 E-value=0.015 Score=50.32 Aligned_cols=25 Identities=28% Similarity=0.394 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.-.++++|++|||||||++.|.+..
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~~~ 40 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSMNE 40 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998643
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=94.61 E-value=0.018 Score=53.51 Aligned_cols=27 Identities=30% Similarity=0.470 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+..+.|.||+|+||||+++.++....
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~ 76 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETN 76 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhC
Confidence 567799999999999999999998764
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=94.60 E-value=0.016 Score=50.84 Aligned_cols=25 Identities=32% Similarity=0.420 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhh
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMK 155 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~ 155 (399)
..|+-+.|.|+||+||||+.-.|..
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999988876
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=94.60 E-value=0.013 Score=50.46 Aligned_cols=26 Identities=27% Similarity=0.360 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+.-.++++|++|||||||++.|.+..
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTTS
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcCC
Confidence 44568999999999999999998753
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=94.57 E-value=0.016 Score=50.62 Aligned_cols=28 Identities=11% Similarity=0.356 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
+.-.++++|++|||||||++.+.+...+
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~~~~ 46 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHKMSP 46 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSCCCG
T ss_pred cceEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 3456899999999999999999886543
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=94.56 E-value=0.017 Score=56.60 Aligned_cols=24 Identities=25% Similarity=0.423 Sum_probs=21.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhh
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLM 154 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~ 154 (399)
+...+.+|+||||+||||++.+|.
T Consensus 23 f~~gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 23 FEKGIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHH
T ss_pred cCCCeEEEECCCCCCHHHHHHHHH
Confidence 345799999999999999999985
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=94.56 E-value=0.016 Score=55.80 Aligned_cols=29 Identities=17% Similarity=0.450 Sum_probs=24.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
..+..+.|.||+|+|||||++.+++....
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 35678999999999999999999987643
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=94.54 E-value=0.017 Score=51.13 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++++|++|||||||++.|.+..
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998754
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=94.54 E-value=0.015 Score=54.65 Aligned_cols=27 Identities=30% Similarity=0.454 Sum_probs=23.7
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
...+.|.||+|+||||++++|+.....
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~ 73 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFD 73 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHS
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcC
Confidence 358999999999999999999987644
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=94.54 E-value=0.013 Score=51.93 Aligned_cols=23 Identities=30% Similarity=0.530 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.|.+..
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=94.53 E-value=0.018 Score=53.43 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.|.+..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999854
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.50 E-value=0.016 Score=51.12 Aligned_cols=25 Identities=28% Similarity=0.474 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
...++++|++|||||||++.|.+..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcCC
Confidence 3468999999999999999998754
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=94.49 E-value=0.017 Score=51.11 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.|.+..
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998753
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=94.48 E-value=0.012 Score=50.47 Aligned_cols=22 Identities=27% Similarity=0.548 Sum_probs=9.2
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.++++|++|||||||++.|.+.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=94.48 E-value=0.019 Score=55.56 Aligned_cols=25 Identities=20% Similarity=0.380 Sum_probs=22.8
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
.+.|.||+|+||||+++.+++....
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhh
Confidence 8999999999999999999987654
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.48 E-value=0.016 Score=51.40 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++++|++|||||||++.|.+..
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred eEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998753
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=94.45 E-value=0.017 Score=54.98 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+..+.|.||+|+|||||++.++...
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~ 61 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEA 61 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 45789999999999999999998865
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.018 Score=50.29 Aligned_cols=25 Identities=24% Similarity=0.314 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.-.++++|++|||||||++.+.+..
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC--
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCC
Confidence 4468999999999999999998643
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.022 Score=50.49 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
..+.|.||+|+||||+++.++....
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 5889999999999999999987653
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.009 Score=53.19 Aligned_cols=26 Identities=31% Similarity=0.482 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
....++|+|++|||||||++.|.+..
T Consensus 28 ~~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 28 VQPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CSCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 34568999999999999999999864
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=94.40 E-value=0.0011 Score=68.09 Aligned_cols=61 Identities=7% Similarity=0.036 Sum_probs=51.2
Q ss_pred EEEcCC--ChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 249 IFICPP--SMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 249 ili~~P--~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
+++.+| ++++||||++++|+.+...+.+.|..+.+ + .++++++|+++.+. .+++++.+.++
T Consensus 411 ~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~--~-------~~vi~itH~~~~~~-~~d~~~~~~~~ 473 (517)
T 4ad8_A 411 STVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLAD--T-------RQVLVVTHLAQIAA-RAHHHYKVEKQ 473 (517)
T ss_dssp HHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHH--H-------SEEEEECCCHHHHH-HSSEEEEEECC
T ss_pred HHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhC--C-------CEEEEEecCHHHHH-hCCEEEEEecc
Confidence 677888 99999999999999999999999988753 2 28899999987664 68888888654
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.37 E-value=0.018 Score=51.28 Aligned_cols=23 Identities=30% Similarity=0.557 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
-.++++|++|||||||++.|.+.
T Consensus 35 ~ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 35 VKVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=94.36 E-value=0.019 Score=51.25 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..++|+|.+|||||||++.|+...
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 578999999999999999998764
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.33 E-value=0.024 Score=51.74 Aligned_cols=27 Identities=33% Similarity=0.512 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
....+.|.||+|+||||+++.++....
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~~ 64 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEAQ 64 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 456789999999999999999988653
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=94.33 E-value=0.017 Score=50.41 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
+.-.++++|++|||||||++.+.+.
T Consensus 28 ~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 28 KQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CccEEEEECCCCCCHHHHHHHHHhC
Confidence 4456999999999999999999764
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=94.30 E-value=0.02 Score=53.54 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++|+|.+|||||||+|.|.+..
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTTC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999864
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.28 E-value=0.02 Score=51.39 Aligned_cols=23 Identities=39% Similarity=0.579 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
-.++|+|.+|||||||++.+.+.
T Consensus 38 ~kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 38 YRVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=94.28 E-value=0.023 Score=56.11 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=24.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-+|+.++|+||+|+|||||++.|++..
T Consensus 172 ~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 172 GRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp BTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 489999999999999999999998764
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=94.27 E-value=0.02 Score=49.71 Aligned_cols=22 Identities=27% Similarity=0.472 Sum_probs=20.3
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.++++|++|||||||++.|.+.
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=94.22 E-value=0.021 Score=53.06 Aligned_cols=24 Identities=25% Similarity=0.548 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++++|++|+|||||++.|.+..
T Consensus 40 ~~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 40 LTILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999999764
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=94.21 E-value=0.024 Score=57.31 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=25.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+|+.++|.||||+|||||++.|+....
T Consensus 149 ~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 149 IKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp ETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred ccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 4899999999999999999999987654
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=94.19 E-value=0.02 Score=56.13 Aligned_cols=23 Identities=39% Similarity=0.491 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.|.+..
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~~ 25 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRAN 25 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47999999999999999999864
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=94.18 E-value=0.021 Score=50.17 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++++|++|||||||++.+.+..
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHhCc
Confidence 358999999999999999998754
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=94.16 E-value=0.022 Score=53.88 Aligned_cols=24 Identities=17% Similarity=0.403 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++++|++|||||||++.|.|..
T Consensus 25 ~~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 25 PQIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp CEEEEEECSSSSHHHHHHHHHTSC
T ss_pred CeEEEEcCCCCCHHHHHHHHHCCC
Confidence 469999999999999999999864
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=94.15 E-value=0.03 Score=51.84 Aligned_cols=24 Identities=33% Similarity=0.577 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++++|.+|+|||||++.|.+..
T Consensus 37 ~~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 37 MTVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999999864
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=94.07 E-value=0.027 Score=54.79 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+|+++.|.||+|+|||||+..++...
T Consensus 59 ~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 59 PRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 378999999999999999988887654
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.06 E-value=0.029 Score=46.98 Aligned_cols=26 Identities=23% Similarity=0.185 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+..+.|.||+|+|||++++.|....
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhC
Confidence 45679999999999999999998754
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.04 E-value=0.025 Score=50.57 Aligned_cols=23 Identities=43% Similarity=0.664 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.|.+..
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=94.03 E-value=0.018 Score=49.72 Aligned_cols=24 Identities=21% Similarity=0.306 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.-.++++|++|||||||++.|.+.
T Consensus 22 ~~~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 22 KIRVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 346899999999999999999753
|
| >1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=94.01 E-value=0.079 Score=50.70 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=22.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhh
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMK 155 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~ 155 (399)
..|+-+.|.|+||+||||+.-.|..
T Consensus 145 ~~g~gvli~G~sG~GKStlal~l~~ 169 (312)
T 1knx_A 145 VFGVGVLLTGRSGIGKSECALDLIN 169 (312)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHT
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4688899999999999999988765
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=93.99 E-value=0.022 Score=53.29 Aligned_cols=25 Identities=12% Similarity=0.283 Sum_probs=22.2
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.-.++++|.+|||||||++.|.+..
T Consensus 26 ~~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 26 LPQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CCEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CCeEEEEeCCCCCHHHHHHHHHCCC
Confidence 3479999999999999999999864
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.97 E-value=0.025 Score=49.81 Aligned_cols=23 Identities=22% Similarity=0.398 Sum_probs=20.5
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.|.+..
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 58999999999999999998653
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=93.96 E-value=0.027 Score=55.27 Aligned_cols=28 Identities=21% Similarity=0.171 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
.+..++++||+|+||||+++.|+.....
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~~ 61 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREYM 61 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHHH
Confidence 5667899999999999999999876544
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=93.88 E-value=0.027 Score=50.13 Aligned_cols=24 Identities=25% Similarity=0.484 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.-.++|+|++|||||||++.|.+.
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 346899999999999999999875
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.88 E-value=0.032 Score=50.60 Aligned_cols=25 Identities=28% Similarity=0.513 Sum_probs=21.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhh
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMK 155 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~ 155 (399)
..|+.+++.||+||||||++..++-
T Consensus 74 ~~g~~~~i~g~TGsGKTt~~~~~~~ 98 (235)
T 3llm_A 74 SQNSVVIIRGATGCGKTTQVPQFIL 98 (235)
T ss_dssp HHCSEEEEECCTTSSHHHHHHHHHH
T ss_pred hcCCEEEEEeCCCCCcHHhHHHHHh
Confidence 3689999999999999998876643
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=93.84 E-value=0.026 Score=49.74 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.-.++++|++|||||||++.+.+.
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHhC
Confidence 346899999999999999998864
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=93.84 E-value=0.012 Score=51.36 Aligned_cols=23 Identities=39% Similarity=0.590 Sum_probs=4.7
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
-.++|+|++|||||||++.|.+.
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999999875
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=93.76 E-value=0.029 Score=52.71 Aligned_cols=26 Identities=23% Similarity=0.266 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+..+.|.||+|+|||++++.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45679999999999999999888765
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.75 E-value=0.028 Score=49.56 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++++|++|+|||||++.+.+..
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~~ 33 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSNK 33 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 358999999999999999998643
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=93.63 E-value=0.033 Score=54.00 Aligned_cols=27 Identities=26% Similarity=0.497 Sum_probs=24.0
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+..+.|.||+|+|||+++++|+....
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~ 76 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLD 76 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 567899999999999999999998763
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=93.62 E-value=0.036 Score=48.44 Aligned_cols=23 Identities=26% Similarity=0.603 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+.|.||+|+||||+++.++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999998754
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=93.52 E-value=0.028 Score=49.98 Aligned_cols=21 Identities=29% Similarity=0.518 Sum_probs=18.5
Q ss_pred cEEEEEcCCCCCHHHHHhhhh
Q 015825 134 KPVVITGPSGVGKGTLISMLM 154 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~ 154 (399)
-.++++|++|||||||++.+.
T Consensus 16 ~ki~v~G~~~~GKSsli~~~~ 36 (221)
T 3gj0_A 16 FKLVLVGDGGTGKTTFVKRHL 36 (221)
T ss_dssp EEEEEEECTTSSHHHHHTTBH
T ss_pred eEEEEECCCCCCHHHHHHHHH
Confidence 358999999999999999954
|
| >1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* | Back alignment and structure |
|---|
Probab=93.47 E-value=0.034 Score=58.27 Aligned_cols=27 Identities=33% Similarity=0.277 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+|.++.|+|++||||||+.+.|...+
T Consensus 50 ~~g~lIvLtGlsGSGKSTlAr~La~~L 76 (630)
T 1x6v_B 50 FRGCTVWLTGLSGAGKTTVSMALEEYL 76 (630)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 367899999999999999999998865
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=93.45 E-value=0.035 Score=46.37 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+..+.|.||+|+|||++++.|....
T Consensus 26 ~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp CSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CCCcEEEECCCCccHHHHHHHHHHhC
Confidence 34678999999999999999998754
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=93.43 E-value=0.041 Score=51.90 Aligned_cols=26 Identities=23% Similarity=0.317 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
....+.|.||+|+|||+|++.|+...
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567788999999999999999876
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.42 E-value=0.014 Score=51.19 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.|.+..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~ 57 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDT 57 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999998643
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=93.41 E-value=0.034 Score=55.76 Aligned_cols=25 Identities=28% Similarity=0.449 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+..+.|.||+|+|||||+++|+...
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5689999999999999999998865
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=93.37 E-value=0.044 Score=52.51 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+.+.+.|.||+|+|||+|++.++...
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCceEEEECCCCccHHHHHHHHHHHc
Confidence 45789999999999999999999876
|
| >1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* | Back alignment and structure |
|---|
Probab=93.33 E-value=0.03 Score=57.27 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.|..+.|+|.|||||||+.+.|+..+.
T Consensus 394 ~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 394 QGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred cceEEEecccCCCCHHHHHHHHHHHHH
Confidence 567899999999999999999998775
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=93.29 E-value=0.042 Score=51.29 Aligned_cols=27 Identities=33% Similarity=0.538 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+..+.|.||+|+|||++++.++....
T Consensus 49 ~~~~vll~G~~GtGKT~la~~la~~l~ 75 (310)
T 1ofh_A 49 TPKNILMIGPTGVGKTEIARRLAKLAN 75 (310)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 456889999999999999999988763
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=93.27 E-value=0.034 Score=58.82 Aligned_cols=28 Identities=29% Similarity=0.431 Sum_probs=24.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+++.++|+|++|+|||||++.|++...
T Consensus 7 ~~~~~i~IiG~~gaGKTTLl~~L~~~~~ 34 (665)
T 2dy1_A 7 AMIRTVALVGHAGSGKTTLTEALLYKTG 34 (665)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEECCCCChHHHHHHHHHHhcC
Confidence 4678999999999999999999997654
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=93.27 E-value=0.034 Score=55.88 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-..++|+|.+|||||||+|.|.+..
T Consensus 23 ~~~V~lvG~~nvGKSTL~n~l~~~~ 47 (456)
T 4dcu_A 23 KPVVAIVGRPNVGKSTIFNRIAGER 47 (456)
T ss_dssp CCEEEEECSSSSSHHHHHHHHEEEE
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3579999999999999999999864
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=93.21 E-value=0.038 Score=53.24 Aligned_cols=27 Identities=22% Similarity=0.444 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+..+.|.||+|+|||++++.++....
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~ 95 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALG 95 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 467999999999999999999998764
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=93.17 E-value=0.038 Score=55.55 Aligned_cols=29 Identities=10% Similarity=0.271 Sum_probs=25.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
.+|++++|.|++|+|||||+..++.....
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 48999999999999999999999886543
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=93.16 E-value=0.046 Score=55.49 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+-+.|.||+|+|||||++++++...
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~~ 74 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEAN 74 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 34588999999999999999998653
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=93.16 E-value=0.047 Score=51.86 Aligned_cols=26 Identities=23% Similarity=0.586 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
+..++|+|++|||||||++.+.+...
T Consensus 3 ~~KI~lvG~~~vGKSSLi~~l~~~~~ 28 (307)
T 3r7w_A 3 GSKLLLMGRSGSGKSSMRSIIFSNYS 28 (307)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHSCCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhCCC
Confidence 34689999999999999999887643
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=93.14 E-value=0.05 Score=47.75 Aligned_cols=24 Identities=38% Similarity=0.408 Sum_probs=19.9
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhh
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMK 155 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~ 155 (399)
+|++.++.||.|+||||++-.++.
T Consensus 2 ~g~i~vi~G~~gsGKTT~ll~~~~ 25 (184)
T 2orw_A 2 SGKLTVITGPMYSGKTTELLSFVE 25 (184)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHH
T ss_pred ccEEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999744443
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=93.13 E-value=0.041 Score=55.01 Aligned_cols=24 Identities=33% Similarity=0.419 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccC
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.++|+|.+|||||||+|.|.+...
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~~~ 28 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGERI 28 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999998643
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=93.07 E-value=0.048 Score=52.77 Aligned_cols=26 Identities=19% Similarity=0.050 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.+|+++.|.||+|+|||||+..++..
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 48999999999999999999998875
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=93.06 E-value=0.023 Score=52.36 Aligned_cols=25 Identities=36% Similarity=0.547 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
+.+.|.||+|+||||++++|+....
T Consensus 45 ~~vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 45 KGVLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp SCCCCBCSSCSSHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhC
Confidence 4478999999999999999988653
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=93.04 E-value=0.039 Score=53.06 Aligned_cols=26 Identities=15% Similarity=0.447 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+..+.|.||+|+||||+++.+....
T Consensus 43 ~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 56789999999999999999998765
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=93.01 E-value=0.042 Score=50.81 Aligned_cols=26 Identities=27% Similarity=0.392 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
....+.|.||+|+|||++++.++...
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~ 88 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEES 88 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 34678999999999999999998864
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=92.96 E-value=0.042 Score=54.40 Aligned_cols=23 Identities=26% Similarity=0.284 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|.++||||||+|.|.+..
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999864
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=92.89 E-value=0.052 Score=52.68 Aligned_cols=26 Identities=42% Similarity=0.460 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
...+++|+|++|+|||||++.|+..+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998764
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=92.86 E-value=0.057 Score=51.44 Aligned_cols=25 Identities=28% Similarity=0.573 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++.+.|.||+|+|||+|+++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998754
|
| >3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A* | Back alignment and structure |
|---|
Probab=92.86 E-value=0.045 Score=55.55 Aligned_cols=25 Identities=32% Similarity=0.482 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+-.++|+|++|||||||+|.|.+..
T Consensus 233 ~~kV~ivG~~nvGKSSLln~L~~~~ 257 (476)
T 3gee_A 233 GVSTVIAGKPNAGKSTLLNTLLGQE 257 (476)
T ss_dssp CEEEEEECCTTSSHHHHHHHCC---
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4459999999999999999999864
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=92.85 E-value=0.019 Score=58.73 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
+| +.+|+|+||||||||+.+|...
T Consensus 60 ~g-~n~i~G~NGaGKS~lleAl~~l 83 (517)
T 4ad8_A 60 GG-FCAFTGETGAGKSIIVDALGLL 83 (517)
T ss_dssp CS-EEEEEESHHHHHHHHTHHHHHH
T ss_pred CC-eEEEEcCCCCCHHHHHHHHHHH
Confidence 44 9999999999999999999655
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=92.84 E-value=0.046 Score=54.92 Aligned_cols=27 Identities=26% Similarity=0.421 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
++.+++++|++||||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 468999999999999999999987654
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=92.82 E-value=0.059 Score=51.37 Aligned_cols=26 Identities=27% Similarity=0.475 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..+.+.|.||+|+|||+++++++...
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~ 75 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEA 75 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHH
Confidence 45679999999999999999998865
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=91.94 E-value=0.02 Score=50.26 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
-.++++|++|||||||++.+.+.
T Consensus 31 ~ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 31 IKCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 45899999999999999998754
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=92.76 E-value=0.039 Score=55.33 Aligned_cols=26 Identities=23% Similarity=0.400 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
..+++|+|++||||||++..|+..+.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999998764
|
| >3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP} | Back alignment and structure |
|---|
Probab=92.75 E-value=0.039 Score=55.76 Aligned_cols=26 Identities=27% Similarity=0.357 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.|-.++|+|++|||||||+|.|.+..
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~~ 248 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQSD 248 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 34469999999999999999999864
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=92.73 E-value=0.061 Score=52.20 Aligned_cols=27 Identities=22% Similarity=0.377 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
..+.+.|.||+|+||||++++|+....
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~ 142 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSG 142 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC
Confidence 567899999999999999999988653
|
| >1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* | Back alignment and structure |
|---|
Probab=92.70 E-value=0.048 Score=56.62 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+.++.|.|++||||||+.+.|...+
T Consensus 395 ~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 395 QGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred cceEEEeecCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999998865
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=92.68 E-value=0.052 Score=51.78 Aligned_cols=22 Identities=41% Similarity=0.697 Sum_probs=20.6
Q ss_pred EEEEcCCCCCHHHHHhhhhhcc
Q 015825 136 VVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+.|.||+|+||||+++.+++.+
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999875
|
| >1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=92.65 E-value=0.057 Score=52.54 Aligned_cols=27 Identities=26% Similarity=0.556 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
....+.|.||+|+||||+++.|+....
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~ 97 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLD 97 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhC
Confidence 356789999999999999999998763
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=92.52 E-value=0.062 Score=51.41 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.+|+++.|.||+|+||||++..++..
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 47999999999999999999998865
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=92.50 E-value=0.0017 Score=62.88 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.4
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhh
Q 015825 132 VEKPVVITGPSGVGKGTLISMLM 154 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~ 154 (399)
...+.+|+||||+||||++.+|.
T Consensus 22 ~~~~~~i~G~NGsGKS~lleAi~ 44 (339)
T 3qkt_A 22 KEGINLIIGQNGSGKSSLLDAIL 44 (339)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHH
Confidence 45689999999999999999874
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=92.46 E-value=0.06 Score=53.84 Aligned_cols=23 Identities=43% Similarity=0.625 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|.+++|||||+|.|.+..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~ 25 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKK 25 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999999864
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=92.42 E-value=0.052 Score=52.59 Aligned_cols=24 Identities=13% Similarity=0.333 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++++|.+|||||||++.|.|..
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTTSC
T ss_pred CeEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999864
|
| >1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A* | Back alignment and structure |
|---|
Probab=92.42 E-value=0.074 Score=55.38 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..++++|++++|||||+|.|.|..
T Consensus 39 ~~VaivG~pnvGKStLiN~L~g~~ 62 (592)
T 1f5n_A 39 VVVAIVGLYRTGKSYLMNKLAGKK 62 (592)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred cEEEEECCCCCCHHHHHHhHcCCC
Confidence 468999999999999999999875
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=92.29 E-value=0.078 Score=48.72 Aligned_cols=26 Identities=38% Similarity=0.516 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
+..+.|.||+|+|||++++.|.....
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 46789999999999999999987654
|
| >3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp} | Back alignment and structure |
|---|
Probab=92.23 E-value=0.072 Score=50.73 Aligned_cols=26 Identities=31% Similarity=0.647 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
...+.|.||+|+||||+++.++....
T Consensus 55 ~~~vll~G~~GtGKT~la~~ia~~~~ 80 (338)
T 3pfi_A 55 LDHILFSGPAGLGKTTLANIISYEMS 80 (338)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999987754
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 399 | ||||
| d1lvga_ | 190 | c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculu | 2e-42 | |
| d1s96a_ | 205 | c.37.1.1 (A:) Guanylate kinase {Escherichia coli [ | 2e-41 | |
| d1gkya_ | 186 | c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Sac | 2e-41 | |
| d1kgda_ | 178 | c.37.1.1 (A:) Guanylate kinase-like domain of Cask | 3e-37 | |
| d1kjwa2 | 199 | c.37.1.1 (A:526-724) Guanylate kinase-like domain | 6e-35 | |
| d1znwa1 | 182 | c.37.1.1 (A:20-201) Guanylate kinase {Mycobacteriu | 8e-32 | |
| d1qhxa_ | 178 | c.37.1.3 (A:) Chloramphenicol phosphotransferase { | 2e-12 | |
| d2bdta1 | 176 | c.37.1.25 (A:1-176) Hypothetical protein BH3686 {B | 2e-11 | |
| d1zp6a1 | 176 | c.37.1.25 (A:6-181) Hypothetical protein Atu3015 { | 2e-11 | |
| d1ly1a_ | 152 | c.37.1.1 (A:) Polynucleotide kinase, kinase domain | 2e-08 | |
| d1y63a_ | 174 | c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishma | 4e-05 | |
| d1knqa_ | 171 | c.37.1.17 (A:) Gluconate kinase {Escherichia coli | 4e-05 | |
| d2vp4a1 | 197 | c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fr | 1e-04 | |
| d1s3ga1 | 182 | c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac | 1e-04 | |
| d1zina1 | 182 | c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bac | 1e-04 | |
| d1khta_ | 190 | c.37.1.1 (A:) Adenylate kinase {Archaeon Methanoco | 2e-04 | |
| d2cdna1 | 181 | c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium | 3e-04 | |
| d1nksa_ | 194 | c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobu | 4e-04 | |
| d1zaka1 | 189 | c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Mai | 8e-04 | |
| d1lw7a2 | 192 | c.37.1.1 (A:220-411) Transcriptional regulator Nad | 0.001 | |
| d1rz3a_ | 198 | c.37.1.6 (A:) Hypothetical protein rbstp0775 {Baci | 0.002 | |
| d1e6ca_ | 170 | c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chr | 0.003 | |
| d1e2ka_ | 329 | c.37.1.1 (A:) Thymidine kinase {Herpes simplex vir | 0.004 |
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Score = 145 bits (366), Expect = 2e-42
Identities = 89/179 (49%), Positives = 125/179 (69%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
+PVV++GPSG GK TL+ L +E S+FGFSVSHTTR PR E+DG Y+F R +M++
Sbjct: 1 RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRD 60
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICP 253
I G F+E A GNLYGTS EAV AV + C+LD+D+QG RS++ + L I+IF+ P
Sbjct: 61 IAAGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQP 120
Query: 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKK 312
PS++ LE+RLR R TETE+ + KRL A+ +++ K G+FD ++ ND L++ Y LK+
Sbjct: 121 PSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGLFDLVIINDDLDKAYATLKQ 179
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} Length = 205 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Score = 143 bits (360), Expect = 2e-41
Identities = 74/180 (41%), Positives = 96/180 (53%), Gaps = 4/180 (2%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSM-FGFSVSHTTRAPRAMEKDGVHYHFTERSVMEK 192
+++ PSG GK +LI L+K P SVSHTTR PR E G HY F ++
Sbjct: 3 TLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKE 62
Query: 193 AIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFIC 252
I FLE A V GN YGTS EA+E V G LDID QGA+ +R A IFI
Sbjct: 63 MISRDAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFIL 122
Query: 253 PPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKK 312
PPS EL+ RLR RG ++E+ I KR+ A E+ +D+++ ND + +LK
Sbjct: 123 PPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHYAE---YDYLIVNDDFDTALTDLKT 179
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 186 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 142 bits (358), Expect = 2e-41
Identities = 88/180 (48%), Positives = 125/180 (69%), Gaps = 2/180 (1%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
+P+VI+GPSG GK TL+ L E+P FGFSVS TTR PRA E +G Y+F +
Sbjct: 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSM 61
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASP-LDAIFIFIC 252
IK+ +F+E+A GN YG++V +V+ V+ +GK CILDID+QG +SV+A P L+A F+FI
Sbjct: 62 IKNNEFIEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIA 121
Query: 253 PPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKK 312
PPS+E+L++RL RGTETE+ I KRL A+ E+ + +G D ++ ND L++ Y+ LK
Sbjct: 122 PPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAE-TGAHDKVIVNDDLDKAYKELKD 180
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Score = 131 bits (329), Expect = 3e-37
Identities = 46/186 (24%), Positives = 97/186 (52%), Gaps = 10/186 (5%)
Query: 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVM 190
++ K +V+ G GVG+ + + L+ + P F + + HTTR P+ E++G +Y+F M
Sbjct: 1 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQM 60
Query: 191 EKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIF 250
+ I + ++LE+ S +YGT +E + + + G ILD++ Q + +R + +F
Sbjct: 61 MQDISNNEYLEYGSHEDAMYGTKLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVF 120
Query: 251 ICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENL 310
I P++ D+ L+RL+ + +++ + FD + N++++E +L
Sbjct: 121 IAAPTITPGLNE---------DESLQRLQKESDILQRTYAH-YFDLTIINNEIDETIRHL 170
Query: 311 KKHLGL 316
++ + L
Sbjct: 171 EEAVEL 176
|
| >d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Psd-95 species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 125 bits (315), Expect = 6e-35
Identities = 69/180 (38%), Positives = 96/180 (53%), Gaps = 9/180 (5%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHF-TERSVMEK 192
+P++I GP K L+ EFP FG V HTTR R E DG YHF + R MEK
Sbjct: 10 RPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEK 66
Query: 193 AIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFIC 252
I+ KF+E + +LYGTSV++V VA+ GK CILD+ R ++A+ L I IFI
Sbjct: 67 DIQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIR 126
Query: 253 PPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKK 312
P S+E + E + TE+Q K A + + + + F I+ D EE Y +K+
Sbjct: 127 PRSLENVLEINKRI---TEEQARKAFDRATKLEQ--EFTECFSAIVEGDSFEEIYHKVKR 181
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 117 bits (292), Expect = 8e-32
Identities = 71/181 (39%), Positives = 108/181 (59%), Gaps = 6/181 (3%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
+ VV++GPS VGK T++ L + P+ FSVS TTRAPR E DGV YHF + + ++
Sbjct: 3 RVVVLSGPSAVGKSTVVRCLRERIPN-LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQL 61
Query: 194 IKDGKFLEFASVHGNL--YGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFI 251
I G+ LE+A +HG L GT + V A A G ++++D+ GAR+++ + +A+ +F+
Sbjct: 62 IDQGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFL 121
Query: 252 CPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLK 311
PPS ++L+ RL RGTET D I +RL A+ E+ FD ++ N +LE L
Sbjct: 122 APPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGD---FDKVVVNRRLESACAELV 178
Query: 312 K 312
Sbjct: 179 S 179
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Score = 63.5 bits (153), Expect = 2e-12
Identities = 31/188 (16%), Positives = 53/188 (28%), Gaps = 22/188 (11%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
+ +++ G S GK ++ L P + + + + + +
Sbjct: 4 RMIILNGGSSAGKSGIVRCLQSVLPEPW-LAFGVDS------LIEAMPLKMQSAEGGIEF 56
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVR-----ASPLDAIF 248
DG L G E V A+A AG R I+D G + + +
Sbjct: 57 DADGGV-SIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVL 115
Query: 249 IFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKL--EEC 306
E R ARG K+ E +D + EC
Sbjct: 116 WVGVRCDGAVAEGRETARGDRVAGMAAKQAYVVHEG-------VEYDVEVDTTHKESIEC 168
Query: 307 YENLKKHL 314
+ H+
Sbjct: 169 AWAIAAHV 176
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Score = 60.4 bits (145), Expect = 2e-11
Identities = 29/184 (15%), Positives = 48/184 (26%), Gaps = 21/184 (11%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
K +ITGP+GVGK T L + + + +
Sbjct: 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNI 62
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICP 253
+ A V + + I I
Sbjct: 63 TDLTVN-------------FLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILW 109
Query: 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND---KLEECYENL 310
+ EEL R R ++Q+ +R EE + GI + YN + + +
Sbjct: 110 TNREELLRRDALRK--KDEQMGERCLELVEEFES---KGIDERYFYNTSHLQPTNLNDIV 164
Query: 311 KKHL 314
K
Sbjct: 165 KNLK 168
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} Length = 176 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Score = 60.0 bits (144), Expect = 2e-11
Identities = 27/191 (14%), Positives = 56/191 (29%), Gaps = 37/191 (19%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
++++G G GK T+ L GV +
Sbjct: 5 NILLLSGHPGSGKSTIAEALANLP---------------------GVPKVHFHSDDLWGY 43
Query: 194 IKDGKFLEFASVHG----NLYGTSVEAVEAVADAGKRCILDIDVQGA-RSVRASPLDAIF 248
IK G+ + + + + A G ILD V+ + +
Sbjct: 44 IKHGRIDPWLPQSHQQNRMIMQIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLH 103
Query: 249 IFICPPSMEELEERLRARGTETED--QILKRLRNAKEEIKQGKSSGIFDHILY---NDKL 303
+ + E ER RG ++ ++ L + ++ G F+H +
Sbjct: 104 YIVLRTTAAEAIERCLDRGGDSLSDPLVVADLHSQFADL------GAFEHHVLPVSGKDT 157
Query: 304 EECYENLKKHL 314
++ ++ L
Sbjct: 158 DQALQSAINAL 168
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} Length = 152 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Score = 50.5 bits (119), Expect = 2e-08
Identities = 19/156 (12%), Positives = 45/156 (28%), Gaps = 11/156 (7%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
K ++ G G GK T + + P + + + M + + +
Sbjct: 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQ--SIMAHEERDEYKYTKKKEGIV 60
Query: 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICP 253
+ ++G V + + +R + + +
Sbjct: 61 TGMQFDTAKSILYGGDSVKGVIISDTNLNPERR-------LAWETFAKEYGWKVEHKVFD 113
Query: 254 PSMEELEERLRARGTE--TEDQILKRLRNAKEEIKQ 287
EL +R RGT+ D + ++ +E +
Sbjct: 114 VPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGL 149
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} Length = 174 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Score = 41.9 bits (97), Expect = 4e-05
Identities = 27/188 (14%), Positives = 50/188 (26%), Gaps = 31/188 (16%)
Query: 133 EKP----VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYH-FTER 187
E+P ++ITG G GK ++ M+ E V + +
Sbjct: 1 EQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHIIE 60
Query: 188 SVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAI 247
E + D S +D + +
Sbjct: 61 EKDEDRLLDFMEPIMVSRGN---------------------HVVDYHSSELFPERWFHMV 99
Query: 248 FIFICPPSMEELEERLRARGTETE---DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLE 304
+ E L ERL R + + ++ EE + + ND LE
Sbjct: 100 VVLHTST--EVLFERLTKRQYSEAKRAENMEAEIQCICEEEARDAYEDDIVLVRENDTLE 157
Query: 305 ECYENLKK 312
+ +++
Sbjct: 158 QMAATVEE 165
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} Length = 171 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Score = 41.6 bits (96), Expect = 4e-05
Identities = 26/149 (17%), Positives = 48/149 (32%), Gaps = 17/149 (11%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIK 195
V+ G SG GK + S + + + F R G + +R +A+
Sbjct: 9 YVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALN 68
Query: 196 DGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPS 255
D F + +L S A K+ D+ +G ++ L
Sbjct: 69 DAAFAMQRTNKVSLIVCS---------ALKKHYRDLLREGNPNLSFIYLKGD-------- 111
Query: 256 MEELEERLRARGTETEDQILKRLRNAKEE 284
+ +E RL+AR + + +
Sbjct: 112 FDVIESRLKARKGHFFKTQMLVTQFETLQ 140
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 197 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 40.8 bits (94), Expect = 1e-04
Identities = 26/173 (15%), Positives = 42/173 (24%), Gaps = 24/173 (13%)
Query: 134 KPVVIT--GPSGVGKGTLISMLMKEFPS------MFGFSVSHTTR--------APRAMEK 177
+P + G G GK T ++ K + P+
Sbjct: 8 QPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAM 67
Query: 178 DGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRC--ILDIDVQG 235
Y A + K + VE + + L+ +
Sbjct: 68 PFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRNGSLEQGMYNTLEEWYKF 127
Query: 236 ARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQI----LKRLRNAKEE 284
D I P E ER+R R E + L+ L E+
Sbjct: 128 IEESIHVQADLIIYLRTSP--EVAYERIRQRARSEESCVPLKYLQELHELHED 178
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Score = 40.3 bits (93), Expect = 1e-04
Identities = 27/183 (14%), Positives = 61/183 (33%), Gaps = 12/183 (6%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIK 195
+V+ G G GKGT ++++ +G T RA ++G +S M++
Sbjct: 3 IVLMGLPGAGKGTQADRIVEK----YGTPHISTGDMFRAAIQEGTELGVKAKSFMDQ--- 55
Query: 196 DGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPS 255
G + G + ++ + A + + +
Sbjct: 56 -GALVPDEVTIGIVRERLSKSDCDNGFLLDGFPRTVPQAEALDQLLADMGRKIEHVLNIQ 114
Query: 256 MEELEERLRARGTETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLK 311
+E+ E R + D + RL + + S + +I +++ +++L
Sbjct: 115 VEKEELIARLTADDNPDTVTNRLEVNMNQTAPLLAFYDSKEVLVNINGQKDIKDVFKDLD 174
Query: 312 KHL 314
L
Sbjct: 175 VIL 177
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} Length = 182 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Score = 39.9 bits (92), Expect = 1e-04
Identities = 26/184 (14%), Positives = 59/184 (32%), Gaps = 12/184 (6%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIK 195
+V+ G G GKGT ++ +G T RA K+G + M++
Sbjct: 3 LVLMGLPGAGKGTQAEKIVAA----YGIPHISTGDMFRAAMKEGTPLGLQAKQYMDR--- 55
Query: 196 DGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPS 255
G + G + + + A + + ++
Sbjct: 56 -GDLVPDEVTIGIVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHID 114
Query: 256 MEELEERLRARGTETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLK 311
+ + R + E + RL ++ + + G +I +E+ + +++
Sbjct: 115 VRQDVLMERLTADDNEATVANRLEVNMKQMKPLVDFYEQKGYLRNINGEQDMEKVFADIR 174
Query: 312 KHLG 315
+ LG
Sbjct: 175 ELLG 178
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} Length = 190 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Score = 40.0 bits (92), Expect = 2e-04
Identities = 30/192 (15%), Positives = 58/192 (30%), Gaps = 15/192 (7%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHT---TRAPRAMEKDGVHYHFTERSVM 190
K VV+TG GVG T + M G + + +++ + + M
Sbjct: 2 KVVVVTGVPGVGSTTSSQLAMDNLRKE-GVNYKMVSFGSVMFEVAKEENLVSDRDQMRKM 60
Query: 191 EKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIF 250
+ + + E+ AV + G S + L+ I
Sbjct: 61 DPETQKRIQKMAGRKIAEMAK---ESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLII 117
Query: 251 ICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQG------KSSGIFDHILYN--DK 302
+ + +E+ R + T D + + + +G I+ N
Sbjct: 118 VVETTGDEILMRRMSDETRVRDLDTASTIEQHQFMNRCAAMSYGVLTGATVKIVQNRNGL 177
Query: 303 LEECYENLKKHL 314
L++ E L L
Sbjct: 178 LDQAVEELTNVL 189
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 181 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Score = 39.1 bits (90), Expect = 3e-04
Identities = 31/182 (17%), Positives = 59/182 (32%), Gaps = 6/182 (3%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIK 195
V++ GP G GKGT L ++ G T R ++G + ++
Sbjct: 3 VLLLGPPGAGKGTQAVKLAEK----LGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDL 58
Query: 196 DGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPS 255
L V L + + + R + +DA+ F
Sbjct: 59 VPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEE 118
Query: 256 MEELEERLRARGTETEDQILKRLRNAKEEIKQGKS--SGIFDHILYNDKLEECYENLKKH 313
+ + R R +T+D IL R++ ++E + ++E + +
Sbjct: 119 VLLERLKGRGRADDTDDVILNRMKVYRDETAPLLEYYRDQLKTVDAVGTMDEVFARALRA 178
Query: 314 LG 315
LG
Sbjct: 179 LG 180
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} Length = 194 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Score = 38.8 bits (89), Expect = 4e-04
Identities = 22/193 (11%), Positives = 56/193 (29%), Gaps = 13/193 (6%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKA 193
K ++TG GVGK T+++ + + + G + + + +R M K
Sbjct: 2 KIGIVTGIPGVGKSTVLAKVKEILDNQ-GINNKIINYGDFMLATALKLGYAKDRDEMRKL 60
Query: 194 IKDGKFLEFASV---HGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIF 250
+ + E + + G S + ++ IF
Sbjct: 61 SVEKQKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVITEINPSVIF 120
Query: 251 ICPPSMEELEERLRARGT-----ETEDQILKRLRNAKEE--IKQGKSSGIFDHILYN--D 301
+ + + R + T +++ ++ N +G ++ N
Sbjct: 121 LLEADPKIILSRQKRDTTRNRNDYSDESVILETINFARYAATASAVLAGSTVKVIVNVEG 180
Query: 302 KLEECYENLKKHL 314
+ + +
Sbjct: 181 DPSIAANEIIRSM 193
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Score = 37.9 bits (87), Expect = 8e-04
Identities = 28/182 (15%), Positives = 55/182 (30%), Gaps = 13/182 (7%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIK 195
V+I+G GKGT ++ + + + RA G + MEK
Sbjct: 6 VMISGAPASGKGTQCELIKTK----YQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQL 61
Query: 196 DGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPS 255
+ V L + + D R +R
Sbjct: 62 VPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETLEIR-------PDTFILLD 114
Query: 256 MEELEERLRARGTETEDQILKRLRNAKEEIKQGKS--SGIFDHILYNDKLEECYENLKKH 313
+ + R +TE+++ RL + I+ S I + + ++ + + +
Sbjct: 115 VPDELLVERVVFDDTEEKVKLRLETYYQNIESLLSTYENIIVKVQGDATVDAVFAKIDEL 174
Query: 314 LG 315
LG
Sbjct: 175 LG 176
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Score = 37.4 bits (85), Expect = 0.001
Identities = 23/173 (13%), Positives = 43/173 (24%), Gaps = 19/173 (10%)
Query: 134 KPVVITGPSGVGKGTLISMLMKEFPSMF--------------GFSVSHTTRAPRAMEKDG 179
K V I G GK L++ L F + G + M
Sbjct: 8 KTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGH 67
Query: 180 VHYHFTERSVMEKAIKDGKF----LEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQG 235
Y K F + ++++ +L + +
Sbjct: 68 QRYIDYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEW 127
Query: 236 ARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ-ILKRLRNAKEEIKQ 287
S +++L ++ + E E L R K I++
Sbjct: 128 VDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEK 180
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Score = 37.0 bits (84), Expect = 0.002
Identities = 18/158 (11%), Positives = 38/158 (24%), Gaps = 9/158 (5%)
Query: 136 VVITGPSGVGKGTLISMLMKEFPSMFGFSVSHT------TRAPRAMEKDGVHYHFTERSV 189
+ I G S GK TL + L + RA R + + +
Sbjct: 25 LGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNEEWFEYYYLQW 84
Query: 190 MEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDA--- 246
+ + F + + H + + +
Sbjct: 85 DVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQRKEWRPFF 144
Query: 247 IFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEE 284
F+ E R + + + + R A++
Sbjct: 145 DFVVYLDCPREIRFARENDQVKQNIQKFINRYWKAEDY 182
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} Length = 170 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Score = 36.1 bits (82), Expect = 0.003
Identities = 21/167 (12%), Positives = 43/167 (25%), Gaps = 21/167 (12%)
Query: 134 KPVVITGPSGVGKGTLISMLMKE--FPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVME 191
+P+ + G G G T+ L + + + T + R
Sbjct: 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHTSGMTVADVVAAEGWPGFRRRES 62
Query: 192 KAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGA--RSVRASPLDAIFI 249
+A++ G + + + G L + R +
Sbjct: 63 EALQAVATPNRVVATGGGMVLLEQNRQFMRAHGTVVYLFAPAEELALRLQASLQAHQRPT 122
Query: 250 FICPPSMEELEERLRARG-----------------TETEDQILKRLR 279
P EE+E LR R ++++ +R
Sbjct: 123 LTGRPIAEEMEAVLREREALYQDVAHYVVDATQPPAAIVCELMQTMR 169
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} Length = 329 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Score = 36.5 bits (84), Expect = 0.004
Identities = 25/191 (13%), Positives = 47/191 (24%), Gaps = 49/191 (25%)
Query: 136 VVITGPSGVGKGTLISMLMKEF----------PSMFGFSVSHTTRAPRAMEKDGVHYHFT 185
V I GP G+GK T +L+ P + + + +
Sbjct: 7 VYIDGPHGMGKTTTTQLLVALGSRDDIVYVPEPMTYWRVLGASETIAN-IYTTQHRLDQG 65
Query: 186 ERSVMEKAIKDGKF-LEFASVHGNLYGTSVEAVEAVADAGKRCILDIDVQGARSVRAS-- 242
E S + A+ + + + A + + + R A+
Sbjct: 66 EISAGDAAVVMTSAQITMGMPYAVTDAVLAPHIGGEAGSSHAPPPALTLIFDRHPIAALL 125
Query: 243 ----------------------------PLDAIFIFICPPSMEELEERLRARGTETEDQI 274
P I + P + +RL R E ++
Sbjct: 126 CYPAARYLMGSMTPQAVLAFVALIPPTLPGTNIVLGALPE--DRHIDRLAKRQRPGE-RL 182
Query: 275 ----LKRLRNA 281
L +R
Sbjct: 183 DLAMLAAIRRV 193
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 399 | |||
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 99.96 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 99.95 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 99.95 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 99.95 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 99.95 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 99.94 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 99.93 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 99.93 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 99.92 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 99.92 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 99.92 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 99.91 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 99.9 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 99.9 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 99.9 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 99.9 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 99.89 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 99.88 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 99.88 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 99.83 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 99.83 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 99.83 | |
| d1kjwa2 | 199 | Guanylate kinase-like domain of Psd-95 {Rat (Rattu | 99.82 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 99.81 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 99.8 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 99.77 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 99.77 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 99.69 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 98.37 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 98.36 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 98.22 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 98.2 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 98.11 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 98.08 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 98.05 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 98.04 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 98.03 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.95 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.94 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.92 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.91 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 97.86 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 97.86 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 97.85 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 97.81 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 97.79 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 97.79 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 97.78 | |
| d1u0la1 | 66 | Probable GTPase EngC (YjeQ), N-terminal domain {Th | 97.76 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 97.75 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 97.74 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.72 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.72 | |
| d1t9ha1 | 67 | Probable GTPase EngC (YjeQ), N-terminal domain {Ba | 97.72 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.69 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.65 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 97.64 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.6 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 97.59 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 97.56 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 97.48 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.31 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.22 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.21 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 97.08 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.97 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 96.88 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 96.85 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.82 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 96.78 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 96.76 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 96.76 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 96.58 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.49 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.45 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 96.42 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.41 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.4 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.38 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.37 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.31 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 96.29 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 96.27 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.25 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 96.25 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.23 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 96.22 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 96.2 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 96.18 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.18 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.16 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 96.16 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 96.13 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.12 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.12 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.1 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 96.06 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 96.04 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 96.04 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.89 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 95.83 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.82 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 95.81 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 95.81 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.76 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 95.74 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.61 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.61 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 95.5 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 95.49 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.47 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 95.47 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 95.44 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 95.44 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 95.43 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 95.38 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 95.35 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 95.35 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 95.34 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 95.31 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.27 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 95.23 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 95.22 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 95.21 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 95.19 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 95.17 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 95.14 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 95.14 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 95.12 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 95.09 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 95.08 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 95.05 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 95.04 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 95.02 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 95.01 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 95.0 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 94.94 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 94.89 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 94.88 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 94.87 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 94.86 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 94.85 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 94.78 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.78 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 94.72 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 94.71 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 94.67 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 94.66 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 94.66 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 94.64 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 94.63 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 94.62 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 94.62 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 94.52 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 94.5 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 94.48 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.44 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 94.43 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 94.42 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 94.4 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 94.39 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 94.36 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 94.36 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 94.36 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 94.35 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 94.35 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 94.35 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 94.33 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 94.31 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 94.3 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 94.28 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 94.2 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 94.14 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 94.13 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 94.07 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 94.04 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 94.04 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 93.98 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 93.96 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 93.93 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 93.92 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 93.86 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 93.85 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 93.8 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 93.74 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 93.73 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 93.72 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 93.68 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 93.68 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 93.62 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 93.51 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 93.48 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 93.39 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 93.34 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 93.31 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 93.3 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 93.27 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 93.21 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 93.18 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 92.92 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 92.88 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 92.87 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 92.84 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 92.75 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.7 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 92.65 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 92.56 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 92.52 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 92.47 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 92.25 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 92.06 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 91.85 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 91.78 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 91.21 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 91.13 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 91.13 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 91.1 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 91.04 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 90.92 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 90.47 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 90.21 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 90.11 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 89.95 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 89.95 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 89.89 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 89.85 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 89.73 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 89.26 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 89.25 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 89.1 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 88.78 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 88.72 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 88.34 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 87.68 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 87.65 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 87.38 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 87.07 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 87.03 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 87.02 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 86.36 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 85.45 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 85.43 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 84.93 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 84.76 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 84.68 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 84.18 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 83.86 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 83.66 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 83.39 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 81.87 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 81.82 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 81.31 | |
| d1xx6a1 | 141 | Thymidine kinase, TK1, N-terminal domain {Clostrid | 80.96 |
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.96 E-value=2.6e-31 Score=244.76 Aligned_cols=216 Identities=19% Similarity=0.141 Sum_probs=143.3
Q ss_pred HhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--ccccCCeeEEecChHHHHHH
Q 015825 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVMEKA 193 (399)
Q Consensus 116 ~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~~i~yvfq~~~lf~~~ 193 (399)
.+|...+..+.++...+|++++|+||||||||||+++|+|+++|..| .+........ ....+++||+||++.+|+++
T Consensus 9 ~yg~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG-~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~~ 87 (232)
T d2awna2 9 AWGEVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSG-DLFIGEKRMNDTPPAERGVGMVFQSYALYPHL 87 (232)
T ss_dssp EETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE-EEEESSSCCTTSCGGGTCEEEECSSCCC----
T ss_pred EECCEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCC-EEEECCEECCCCchhhceeeeeccccccccch
Confidence 34555555445566779999999999999999999999999999999 6654332221 12235699999999999998
Q ss_pred HhhhhhHHHHHHhccccCCcHHHHHHHHHc-----CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCC
Q 015825 194 IKDGKFLEFASVHGNLYGTSVEAVEAVADA-----GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGT 268 (399)
Q Consensus 194 ~~~~~~~E~~~~~~~~~g~~~~~i~~~~~~-----g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~ 268 (399)
++.|++.+...+++.+.+++++.+.+ ++....+-.+..+....+|+...+.+++.+|++++||||++++|+
T Consensus 88 ----tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~illlDEPts~LD~ 163 (232)
T d2awna2 88 ----SVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDA 163 (232)
T ss_dssp ---------------------CHHHHHHHHHHHHC---------------------CHHHHHHTCCSEEEEESTTTTSCH
T ss_pred ----hHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCH
Confidence 99999998877777666554443332 122223333444444567888888999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhccc
Q 015825 269 ETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVA 343 (399)
Q Consensus 269 ~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~ 343 (399)
.++.++++.+.++.++. ..|+|+++||+++|...+++++.+.+|+++..++|.+++..|.+..++++-
T Consensus 164 ~~~~~i~~~l~~l~~~~-------g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~v~~fl 231 (232)
T d2awna2 164 ALRVQMRIEISRLHKRL-------GRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVAGFI 231 (232)
T ss_dssp HHHHHHHHHHHHHHHHS-------CCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHHHHHS
T ss_pred HHHHHHHHHHHHHHHhc-------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCCCHHHHHhc
Confidence 99999999999987653 348999999999999999999999999999999999999999988887653
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=99.95 E-value=3.6e-31 Score=244.65 Aligned_cols=216 Identities=12% Similarity=0.097 Sum_probs=160.2
Q ss_pred HHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--ccccCCeeEEecChHHHHH
Q 015825 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVMEK 192 (399)
Q Consensus 115 ~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~~i~yvfq~~~lf~~ 192 (399)
+.+|-..+....++...+|++++|+||||||||||+++|+|+++|..| .+........ ....+.+||+||++.+|++
T Consensus 14 k~yg~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG-~I~i~g~~i~~~~~~~r~ig~v~Q~~~l~~~ 92 (239)
T d1v43a3 14 KRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEG-RIYFGDRDVTYLPPKDRNISMVFQSYAVWPH 92 (239)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEE-EEEETTEECTTSCGGGGTEEEEEC------C
T ss_pred EEECCEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCC-EEEEcceecccCCcccceEEEEeechhhccc
Confidence 445555555555566789999999999999999999999999999999 5553221110 1123469999999999988
Q ss_pred HHhhhhhHHHHHHhccccCCcHHHHHHHHHcCCceEEecc------hhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhC
Q 015825 193 AIKDGKFLEFASVHGNLYGTSVEAVEAVADAGKRCILDID------VQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (399)
Q Consensus 193 ~~~~~~~~E~~~~~~~~~g~~~~~i~~~~~~g~~~vldld------~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~l 266 (399)
+ ++.|++.+....++.+++.+++.+.+.+.. +++. +..+....+|+...+.+++.+|++++|||||+++
T Consensus 93 l----tv~enl~~~~~~~~~~~~~~~~~~~~~l~~-~~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iLllDEPts~L 167 (239)
T d1v43a3 93 M----TVYENIAFPLKIKKFPKDEIDKRVRWAAEL-LQIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNL 167 (239)
T ss_dssp C----CHHHHHHTTCC--CCCHHHHHHHHHHHHHH-TTCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEEEEESTTTTS
T ss_pred c----hHHHHHHHHHHHcCCCHHHHHHHHHHHHHH-cCChhhhcCChhhCCHHHHHHHHHHhhhccCCCceeecCCcccC
Confidence 7 999999999888888887776655432111 1111 1111111244455667999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhccc
Q 015825 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKVA 343 (399)
Q Consensus 267 D~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~~ 343 (399)
|+.++.++++.+.++.++.+ .|++++|||++++.+.+++++.+.+|+++..++|.+++..|.+..++++-
T Consensus 168 D~~~~~~i~~ll~~l~~~~g-------~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~~~~~l 237 (239)
T d1v43a3 168 DAKLRVAMRAEIKKLQQKLK-------VTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVATFI 237 (239)
T ss_dssp CHHHHHHHHHHHHHHHHHHT-------CEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHhcC-------CeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHHHHhh
Confidence 99999999999999877653 38999999999999999999999999999999999999999888777653
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=99.95 E-value=8.5e-31 Score=242.40 Aligned_cols=208 Identities=12% Similarity=0.084 Sum_probs=165.9
Q ss_pred EeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC-------ccccccCCeeEEecChHHHHHHHh
Q 015825 123 AWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA-------PRAMEKDGVHYHFTERSVMEKAIK 195 (399)
Q Consensus 123 ~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~-------~~~~~~~~i~yvfq~~~lf~~~~~ 195 (399)
..+.++...+|++++|+||||||||||+++|+|+++|..| .+...... .....++++||+||++.+|+++
T Consensus 21 L~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G-~I~~~g~~i~~~~~~~~~~~rr~ig~vfQ~~~L~p~l-- 97 (242)
T d1oxxk2 21 LDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTG-ELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNL-- 97 (242)
T ss_dssp EEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEE-EEEETTEEEEETTEESSCGGGSCEEEEETTSCCCTTS--
T ss_pred EeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCc-eEEECCEEeecCchhhcchhhccceEEeccccccccc--
Confidence 3344456679999999999999999999999999999988 55432111 1122245699999999999988
Q ss_pred hhhhHHHHHHhccccCCcHHHHHHHHHc-----CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCc
Q 015825 196 DGKFLEFASVHGNLYGTSVEAVEAVADA-----GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTET 270 (399)
Q Consensus 196 ~~~~~E~~~~~~~~~g~~~~~i~~~~~~-----g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~ 270 (399)
++.|++.+....++.+..++++.+.+ ++....+..+..+....+|++..+.+++.+|+++++|||++++|+.+
T Consensus 98 --tv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P~llllDEPt~~LD~~~ 175 (242)
T d1oxxk2 98 --TAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARM 175 (242)
T ss_dssp --CHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCGGG
T ss_pred --cHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhhhCChhhCCHHHHhHHHHHhHHhhcccceeecCCccCCCHHH
Confidence 99999999888888887766655443 12112222333333445667777789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcc
Q 015825 271 EDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKV 342 (399)
Q Consensus 271 ~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~ 342 (399)
..++++.++++.++.+ .+++++|||++++.+.+++++.+.+|+++..++|.++++.|.+..++.+
T Consensus 176 ~~~i~~~i~~l~~~~g-------~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~P~~~~~~~f 240 (242)
T d1oxxk2 176 RDSARALVKEVQSRLG-------VTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQVASL 240 (242)
T ss_dssp HHHHHHHHHHHHHHHC-------CEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHHHHHH
T ss_pred HHHHHHHHHHHHhccC-------CEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHHHhc
Confidence 9999999999877653 3899999999999999999999999999999999999999998887765
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=99.95 E-value=1.2e-30 Score=241.57 Aligned_cols=216 Identities=12% Similarity=0.102 Sum_probs=169.5
Q ss_pred HHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC--------ccccccCCeeEEecC
Q 015825 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA--------PRAMEKDGVHYHFTE 186 (399)
Q Consensus 115 ~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~--------~~~~~~~~i~yvfq~ 186 (399)
+.+|......+.++...+|++++|+||||||||||+++|+|++.|..| .+...... .....++.++|+||+
T Consensus 11 k~yg~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG-~I~~~g~~i~~~~~~~~~~~~~r~ig~v~Q~ 89 (240)
T d1g2912 11 KVFGEVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRG-QIYIGDKLVADPEKGIFVPPKDRDIAMVFQS 89 (240)
T ss_dssp EEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEE-EEEETTEEEEEGGGTEECCGGGSSEEEECSC
T ss_pred EEECCEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCC-EEEECCEEecccchhhhcccccccceecccc
Confidence 345554444445566679999999999999999999999999999888 55432211 112224569999999
Q ss_pred hHHHHHHHhhhhhHHHHHHhccccCCcHHHHHHHHHcCC-----ceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHH
Q 015825 187 RSVMEKAIKDGKFLEFASVHGNLYGTSVEAVEAVADAGK-----RCILDIDVQGARSVRASPLDAIFIFICPPSMEELEE 261 (399)
Q Consensus 187 ~~lf~~~~~~~~~~E~~~~~~~~~g~~~~~i~~~~~~g~-----~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDE 261 (399)
+.+|+.+ ++.|++.+....++.+...+++.+.+.. ....+-.+..+....+|+...+.+|+.+|+++++||
T Consensus 90 ~~L~~~l----tV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~~~p~~LSGGqkQRv~IAraL~~~P~iLllDE 165 (240)
T d1g2912 90 YALYPHM----TVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDE 165 (240)
T ss_dssp CCCCTTS----CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTTCCGGGSCHHHHHHHHHHHHHHTCCSEEEEEC
T ss_pred hhhcchh----hhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 9999887 8999999988888888777665544321 111122233333345666777789999999999999
Q ss_pred HHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhc
Q 015825 262 RLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSK 341 (399)
Q Consensus 262 pl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~ 341 (399)
||+++|+.++..+++.+.++.++.+. ++|++|||++++...+++++.+.+|+++..|++.+++..|.+..+++
T Consensus 166 Pt~~LD~~~~~~i~~~l~~l~~~~g~-------tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~P~~~~~~~ 238 (240)
T d1g2912 166 PLSNLDAKLRVRMRAELKKLQRQLGV-------TTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFVAG 238 (240)
T ss_dssp TTTTSCHHHHHHHHHHHHHHHHHHTC-------EEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHHHH
T ss_pred CCcccCHHHHHHHHHHHHHHHhccCC-------EEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHHHH
Confidence 99999999999999999998877544 89999999999999999999999999999999999999999888765
Q ss_pred c
Q 015825 342 V 342 (399)
Q Consensus 342 ~ 342 (399)
+
T Consensus 239 f 239 (240)
T d1g2912 239 F 239 (240)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=99.95 E-value=8.7e-28 Score=218.16 Aligned_cols=183 Identities=40% Similarity=0.607 Sum_probs=168.8
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCC-cccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhcccc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPS-MFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLY 210 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~-~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~ 210 (399)
+|++++|+||||||||||++.|+...+. .+...++||||+++..+.+|..|+|.+.+.|..++..+.|+|+..+.+++|
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E~~G~dY~Fvs~~~F~~~i~~g~flE~~~~~g~~Y 80 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGEVHGEHYFFVNHDEFKEMISRDAFLEHAEVFGNYY 80 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccccccccceeecHHHHHHHhhhhhheeEEEECCcee
Confidence 5899999999999999999999988764 355578999999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccC
Q 015825 211 GTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKS 290 (399)
Q Consensus 211 g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~ 290 (399)
|++.+.+...+..|..++++++++++..++......+++|+.+|+...|.+|+..|+.++.+.+.+++..+..++.+.
T Consensus 81 Gt~~~~v~~~~~~g~~~ildid~~g~~~lk~~~~~~~~ifi~pps~~~l~~RL~~Rg~~~~~~i~~Rl~~a~~E~~~~-- 158 (205)
T d1s96a_ 81 GTSREAIEQVLATGVDVFLDIDWQGAQQIRQKMPHARSIFILPPSKIELDRRLRGRGQDSEEVIAKRMAQAVAEMSHY-- 158 (205)
T ss_dssp EEEHHHHHHHHTTTCEEEEECCHHHHHHHHHHCTTCEEEEEECSSHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHTTG--
T ss_pred ccccchHHHHHhcCCceeecCcHHHHHHHHhhhcccceeeeeccchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHH--
Confidence 999999999999999999999999999999989999999999999999999999999999999999999988777653
Q ss_pred CCcceEEEeCCCHHHHHHHHHHhhccc
Q 015825 291 SGIFDHILYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 291 ~~~~t~Viv~hdleea~~~l~~ii~~~ 317 (399)
..||+||+|+|++.|+..+..++...
T Consensus 159 -~~fD~vIvNddl~~a~~el~~iI~~e 184 (205)
T d1s96a_ 159 -AEYDYLIVNDDFDTALTDLKTIIRAE 184 (205)
T ss_dssp -GGSSEEEECSSHHHHHHHHHHHHHHH
T ss_pred -hCCCEEEECcCHHHHHHHHHHHHHHH
Confidence 46899999999999999999988544
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=99.94 E-value=1.2e-29 Score=234.58 Aligned_cols=205 Identities=14% Similarity=0.088 Sum_probs=159.0
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----c--ccccCCeeEEecChHHHHHHHhhhh
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----R--AMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~--~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
.++...+|++++|+||||||||||+++|+|+.+|..| .+....... . ...++.+||+||++.+|+.+ +
T Consensus 24 vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG-~I~~~g~~i~~~~~~~~~~~rr~ig~VfQ~~~l~~~~----t 98 (240)
T d3dhwc1 24 VSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEG-SVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSR----T 98 (240)
T ss_dssp EEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEE-EEEETTEEECTTCHHHHHHHHHHEEECCSSCCCCTTS----B
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCC-ceEEcCeEeeeCChhhhhhhhccccccccccccCCCc----c
Confidence 3355679999999999999999999999999999988 555322111 1 11123599999999888877 8
Q ss_pred hHHHHHHhccccCCcHHHHHHHHHc-----CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHH
Q 015825 199 FLEFASVHGNLYGTSVEAVEAVADA-----GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQ 273 (399)
Q Consensus 199 ~~E~~~~~~~~~g~~~~~i~~~~~~-----g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~ 273 (399)
+.|++.+....++.+.+.+++.+.+ ++.-..+-.+..+....+|++..+.+++.+|+++++||||+++|+.++.+
T Consensus 99 v~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~~~~~~~LSGG~~QRvaiAraL~~~P~lLllDEPt~~LD~~~~~~ 178 (240)
T d3dhwc1 99 VFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRS 178 (240)
T ss_dssp HHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTTSSCBSCCCHHHHHHHHHHHHHHTCCSEEEEESGGGSSCHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHhhhhccCCCeEEeccccccCCHHHhhH
Confidence 9999998877777776555443332 21111122222223334566667779999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcc
Q 015825 274 ILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKV 342 (399)
Q Consensus 274 i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~ 342 (399)
+++.|+++.++.+ .++++++||++++...+++++.+.+|+++..+++.+++..|.+..+++|
T Consensus 179 i~~~l~~l~~~~g-------~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~~P~~~~t~~F 240 (240)
T d3dhwc1 179 ILELLKDINRRLG-------LTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKF 240 (240)
T ss_dssp HHHHHHHHHHHHC-------CEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTCSSCCTTTTCC
T ss_pred HHHHHHHHHhccC-------CEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCChHHcCC
Confidence 9999999887653 3899999999999999999999999999999999999999988776543
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=99.93 E-value=2.6e-29 Score=230.74 Aligned_cols=205 Identities=13% Similarity=0.105 Sum_probs=159.1
Q ss_pred cCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc--ccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 126 KGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR--AMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 126 ~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~--~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
.++...+|++++|+||||||||||+++|+|+++|..| .+........ ...+++++|+||++.+|+++ ++.|++
T Consensus 19 vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG-~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~~----tV~enl 93 (229)
T d3d31a2 19 LSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSG-RILLDGKDVTDLSPEKHDIAFVYQNYSLFPHM----NVKKNL 93 (229)
T ss_dssp EEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEE-EEEETTEECTTSCHHHHTCEEECTTCCCCTTS----CHHHHH
T ss_pred eEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCC-EEEEccEeccccchhHhcceeeccccccCccc----cHHHHH
Confidence 3355679999999999999999999999999999999 5543221110 11134699999999999887 899999
Q ss_pred HHhccccCCc-HHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHH
Q 015825 204 SVHGNLYGTS-VEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNA 281 (399)
Q Consensus 204 ~~~~~~~g~~-~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~ 281 (399)
.+....++.. .+.+.+.++. +...+.+-.+..+....+|+...+.+++.+|++++||||++++|+.++.++++.++++
T Consensus 94 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDEPts~LD~~~~~~i~~~l~~l 173 (229)
T d3d31a2 94 EFGMRMKKIKDPKRVLDTARDLKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVL 173 (229)
T ss_dssp HHHHHHHCCCCHHHHHHHHHHTTCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEESSSTTSCHHHHHHHHHHHHHH
T ss_pred HHHHhhccccHHHHHHHHHHHhcchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecCCCcCCCHHHHHHHHHHHHHH
Confidence 8877665543 3334444433 2211222223333344566677778999999999999999999999999999999998
Q ss_pred HHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcc
Q 015825 282 KEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKV 342 (399)
Q Consensus 282 ~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~ 342 (399)
.++.. .++++++||++++...+++++.+.+|+++..++|.+++..|.+..++.+
T Consensus 174 ~~~~g-------~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~v~~f 227 (229)
T d3d31a2 174 HKKNK-------LTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRVASF 227 (229)
T ss_dssp HHHTT-------CEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTHHHHH
T ss_pred HhcCC-------cEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHHHhc
Confidence 76643 3899999999999999999999999999999999999999988877654
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.93 E-value=1.7e-25 Score=198.42 Aligned_cols=178 Identities=41% Similarity=0.711 Sum_probs=161.3
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccc--c
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNL--Y 210 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~--~ 210 (399)
|++++|+||||||||||++.|...++. ....++||||+++..+.+|..|+|.+.+.|..+...+.|+++..+.++. |
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~-~~~~~~~tTR~~r~~e~~G~dy~fvs~~~f~~~~~~~~f~e~~~~~~~~~~~ 80 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN-LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQGELLEWAEIHGGLHRS 80 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT-CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHTTCEEEEEEEGGGTEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCCC-CeEEEEeeccCCCccccCCcceeeccchhhhhhhcccccchhhhcccCcccc
Confidence 899999999999999999999988764 4558899999999999999999999999999999999999998887654 6
Q ss_pred CCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccC
Q 015825 211 GTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKS 290 (399)
Q Consensus 211 g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~ 290 (399)
|+....+...+..+..++++++++++..++...+.++.+|+.+|+.+.|.+|+..|+.++.+++++++..+..++.+
T Consensus 81 g~~~~~~~~~~~~g~~~i~~~~~~g~~~l~~~~~~~~~i~i~~~s~e~L~~RL~~Rg~~~~e~I~~Rl~~~~~e~~~--- 157 (182)
T d1znwa1 81 GTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAA--- 157 (182)
T ss_dssp EEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHG---
T ss_pred ccccchhhhhhhcCCccccccccchhhhhhhcCcceeEEeeecccHHHHHHHhhhcCcchHHHHHHHHHHHHHHHhh---
Confidence 89999999999999999999999999999988889999999999999999999999999999999999988766655
Q ss_pred CCcceEEEeCCCHHHHHHHHHHhh
Q 015825 291 SGIFDHILYNDKLEECYENLKKHL 314 (399)
Q Consensus 291 ~~~~t~Viv~hdleea~~~l~~ii 314 (399)
.+.||.+|+|+|+++|++.+.++|
T Consensus 158 ~~~fD~vI~Nddle~a~~~l~~iI 181 (182)
T d1znwa1 158 QGDFDKVVVNRRLESACAELVSLL 181 (182)
T ss_dssp GGGSSEEEECSSHHHHHHHHHHHH
T ss_pred HhcCCEEEECcCHHHHHHHHHHHh
Confidence 357899999999999999998876
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.92 E-value=6.3e-28 Score=222.54 Aligned_cols=196 Identities=13% Similarity=0.125 Sum_probs=149.3
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc--cccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP--RAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNL 209 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~--~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~ 209 (399)
.+++++|+||||||||||+++|+|+++|..| .+....... ....++++||+||++.+|+++ ++.|++.|...
T Consensus 23 ~~e~~~liGpnGaGKSTll~~i~Gl~~p~~G-~I~~~G~~i~~~~~~~r~ig~v~Q~~~l~~~l----tV~enl~~~l~- 96 (240)
T d2onka1 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRG-EVRLNGADITPLPPERRGIGFVPQDYALFPHL----SVYRNIAYGLR- 96 (240)
T ss_dssp CSSEEEEECCTTSSHHHHHHHHHTSSCCSEE-EEEETTEECTTSCTTTSCCBCCCSSCCCCTTS----CHHHHHHTTCT-
T ss_pred CCEEEEEECCCCChHHHHHHHHHcCCCCCce-EEEECCEECCcCCHHHcCceeeccchhhcccc----hhhHhhhhhhc-
Confidence 3579999999999999999999999999998 554321110 111235699999999999887 89999988643
Q ss_pred cCCcHHHHHHH----HHc-CCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Q 015825 210 YGTSVEAVEAV----ADA-GKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEE 284 (399)
Q Consensus 210 ~g~~~~~i~~~----~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~ 284 (399)
...+....+. ++. +...+.+-.+..+....+|++..+.+++.+|++++||||++++|+.++..+++.++++.++
T Consensus 97 -~~~~~~~~~~v~~~l~~~gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~ 175 (240)
T d2onka1 97 -NVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQRE 175 (240)
T ss_dssp -TSCHHHHHHHHHHHHHTTTCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHH
T ss_pred -ccCHHHHHHHHHHHHHhcCcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccccCCHHHHHHHHHHHHHHHHh
Confidence 3344433333 222 2222222233344444566777778999999999999999999999999999999998776
Q ss_pred HHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhhhcc
Q 015825 285 IKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSVSKV 342 (399)
Q Consensus 285 l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v~~~ 342 (399)
.+ .++|+++||++++...+++++.+.+|+++..|++.++++.| +..++.+
T Consensus 176 ~g-------~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~-~~~v~~f 225 (240)
T d2onka1 176 FD-------VPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK-NGEVAEF 225 (240)
T ss_dssp HT-------CCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC-CSSHHHH
T ss_pred cC-------CeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcCC-CHHHHHH
Confidence 53 38999999999999999999999999999999999998766 3455544
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=6.7e-25 Score=195.58 Aligned_cols=182 Identities=48% Similarity=0.861 Sum_probs=163.9
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccCCc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTS 213 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g~~ 213 (399)
++++|+||||||||||++.|+...+..+...++||||+++..+..+..|+|.+...|..++..+.|+++..+.+++||++
T Consensus 2 rpIvl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~f~e~~~~~g~~Yg~~ 81 (186)
T d1gkya_ 2 RPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNNEFIEWAQFSGNYYGST 81 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHHHHHTTCEEEEEEETTEEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCCcCCccceeccHHHHHHHHhcccceeeeEEccceeecc
Confidence 57899999999999999999998877777788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCceEEecchhhHHHHHcCC-cceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCC
Q 015825 214 VEAVEAVADAGKRCILDIDVQGARSVRASP-LDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSG 292 (399)
Q Consensus 214 ~~~i~~~~~~g~~~vldld~~g~~~l~~~~-~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~ 292 (399)
...+...+..+..++++++++++..++... .....+|+.+|+.+.|.+|+..|+.++.+++.+++..+..++.+.. ..
T Consensus 82 ~~~i~~~~~~g~~~i~~~~~~~~~~lk~~~~~~~~~i~~~~~~~e~l~~RL~~Rg~~~~~~I~~Rl~~~~~e~~~~~-~~ 160 (186)
T d1gkya_ 82 VASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAAQAELAYAE-TG 160 (186)
T ss_dssp HHHHHHHHHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHHHHHHSCSCHHHHHHHHHHHHHHHHHHT-TT
T ss_pred hhhHHHHhcCCCeEEecchHHHHHHHHHhhcccceEEEecCCcHHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhh-hc
Confidence 999999999999999999999999988754 4677899999999999999999999999999999998877765432 45
Q ss_pred cceEEEeCCCHHHHHHHHHHhhcc
Q 015825 293 IFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 293 ~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
.||+||+|+|++.|++.+.++|..
T Consensus 161 ~fd~vI~N~dle~a~~~l~~iI~~ 184 (186)
T d1gkya_ 161 AHDKVIVNDDLDKAYKELKDFIFA 184 (186)
T ss_dssp CSSEEEECSSHHHHHHHHHHHHHT
T ss_pred CCCEEEECcCHHHHHHHHHHHHHh
Confidence 689999999999999999987754
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.92 E-value=4.2e-25 Score=197.72 Aligned_cols=182 Identities=49% Similarity=0.874 Sum_probs=167.7
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccCCc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGTS 213 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g~~ 213 (399)
++++|+||||||||||++.|+...+..+...++||||+++..+..+..|+|.+...|..+...+.++++..+.+.+||++
T Consensus 1 rpIvl~GPsGsGK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E~~g~dy~fvs~~~f~~~~~~g~~~e~~~~~~~~Yg~~ 80 (190)
T d1lvga_ 1 RPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDGKDYYFVTREMMQRDIAAGDFIEHAEFSGNLYGTS 80 (190)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEEEETTEEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHhCCCceeEEEEEeccCCCCCCccCceeEEeehhHHHHHhhhhhheeeeEEcCcceecc
Confidence 57899999999999999999998887777788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCc
Q 015825 214 VEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGI 293 (399)
Q Consensus 214 ~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~ 293 (399)
.+.+...+..+..++++.++.+...++.....+..+|+.+|+.+.|.+|+..|+.++.+.+.+++.....++......+.
T Consensus 81 ~~~v~~~~~~g~~~~~~~~~~~~~~l~~~~~~~~~I~i~~~~~e~l~~RL~~R~~~~~e~i~~rl~~~~~~~~~~~~~~~ 160 (190)
T d1lvga_ 81 KEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTDMESSKEPGL 160 (190)
T ss_dssp HHHHHHHHHTTCEEEEECCHHHHHHHTTSSCCCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHTTGGGSTTT
T ss_pred cchhhhhhcCCCceeecchHhhhhhhhhccccceEEEEecchHHHHHHHHhhccccchHHHHHHHHHHHHHHHhhhhcCC
Confidence 99999999999999999999999999998999999999999999999999999999999999999988877766655677
Q ss_pred ceEEEeCCCHHHHHHHHHHhhc
Q 015825 294 FDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 294 ~t~Viv~hdleea~~~l~~ii~ 315 (399)
||++|+|+|+++|++++.+++.
T Consensus 161 fd~iI~N~dle~a~~~l~~iI~ 182 (190)
T d1lvga_ 161 FDLVIINDDLDKAYATLKQALS 182 (190)
T ss_dssp CSEEEECSSHHHHHHHHHHHTH
T ss_pred CCEEEECcCHHHHHHHHHHHHH
Confidence 8999999999999999988764
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=99.91 E-value=1.5e-27 Score=223.35 Aligned_cols=215 Identities=13% Similarity=0.070 Sum_probs=158.9
Q ss_pred HHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----------------ccccc
Q 015825 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----------------RAMEK 177 (399)
Q Consensus 115 ~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----------------~~~~~ 177 (399)
+.+|...+..+.++...+|++++|+||||||||||+++|+|+++|..| .+....+.. ....+
T Consensus 10 k~yg~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G-~I~~~G~~i~~~~~~~~~~~~~~~~~~~~~r 88 (258)
T d1b0ua_ 10 KRYGGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEG-AIIVNGQNINLVRDKDGQLKVADKNQLRLLR 88 (258)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEETTEECCEEECTTSSEEESCHHHHHHHH
T ss_pred EEECCEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCC-CEEECCEEeccCCccchhcccccHhHHHHHh
Confidence 345555555555566779999999999999999999999999999888 554321111 01122
Q ss_pred CCeeEEecChHHHHHHHhhhhhHHHHHHhc-cccCCcHHHHHHHHHc-----CCce-EEecchhhHHHHHcCCcceeEEE
Q 015825 178 DGVHYHFTERSVMEKAIKDGKFLEFASVHG-NLYGTSVEAVEAVADA-----GKRC-ILDIDVQGARSVRASPLDAIFIF 250 (399)
Q Consensus 178 ~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~-~~~g~~~~~i~~~~~~-----g~~~-vldld~~g~~~l~~~~~~~~~il 250 (399)
++++|+||++.+|+.+ ++.+++.+.. ..++.+.....+.+.+ +... ..+--|..+....+|++..+.++
T Consensus 89 ~~ig~vfQ~~~l~~~~----tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~QRv~iAraL 164 (258)
T d1b0ua_ 89 TRLTMVFQHFNLWSHM----TVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARAL 164 (258)
T ss_dssp HHEEEECSSCCCCTTS----CHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHHHHHHHHHH
T ss_pred cceEEEEechhhccch----hcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHHHHHHHHHH
Confidence 4589999999888877 8888877653 3455555544443332 1100 00111222233345666677799
Q ss_pred EcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccc
Q 015825 251 ICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKG 330 (399)
Q Consensus 251 i~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~ 330 (399)
+.+|+++++||||+++|+.+..++++.+++++++ ..++++++||++++...+++++.+.+|+++..++|.++
T Consensus 165 ~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~--------g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ev 236 (258)
T d1b0ua_ 165 AMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE--------GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV 236 (258)
T ss_dssp HTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHT--------TCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred hcCCCEEEeccccccCCHHHHHHHHHhhhhhccc--------CCceEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999987643 34899999999999999999999999999999999999
Q ss_pred cCCCcchhhhcc
Q 015825 331 IDLPADHSVSKV 342 (399)
Q Consensus 331 ~~~p~~~~v~~~ 342 (399)
+..|.+..++.+
T Consensus 237 ~~~P~~~~~~~l 248 (258)
T d1b0ua_ 237 FGNPQSPRLQQF 248 (258)
T ss_dssp HHSCCSHHHHHH
T ss_pred HhCCCCHHHHHH
Confidence 999987776654
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=99.90 E-value=7.7e-27 Score=216.17 Aligned_cols=212 Identities=13% Similarity=0.107 Sum_probs=161.2
Q ss_pred HHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC---ccccccCCeeEEecChHHHH
Q 015825 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA---PRAMEKDGVHYHFTERSVME 191 (399)
Q Consensus 115 ~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~---~~~~~~~~i~yvfq~~~lf~ 191 (399)
+.+|...+..+.++...+|++++|+||||||||||+++|+|+++|..| .+...... .....+..++|+||...+|+
T Consensus 10 k~yg~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G-~i~i~G~~i~~~~~~~~~~i~~vpq~~~~~~ 88 (238)
T d1vpla_ 10 KRIGKKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG-IVTVFGKNVVEEPHEVRKLISYLPEEAGAYR 88 (238)
T ss_dssp EEETTEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEETTEETTTCHHHHHTTEEEECTTCCCCT
T ss_pred EEECCEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCC-EEEECcEecccChHHHHhhEeEeeeccccCC
Confidence 446666666666667789999999999999999999999999999999 55432211 11122356999999988888
Q ss_pred HHHhhhhhHHHHHHhccccCCcHHHHHHHHHcC-----CceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhC
Q 015825 192 KAIKDGKFLEFASVHGNLYGTSVEAVEAVADAG-----KRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRAR 266 (399)
Q Consensus 192 ~~~~~~~~~E~~~~~~~~~g~~~~~i~~~~~~g-----~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~l 266 (399)
.+ ++.|++.+...+++.....+.+.++.. +....+-.+..+....+|++..+.+++.+|++++||||++++
T Consensus 89 ~l----tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~illLDEPt~gL 164 (238)
T d1vpla_ 89 NM----QGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGL 164 (238)
T ss_dssp TS----BHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEEEESTTTTC
T ss_pred Cc----cHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEEecCCCCCC
Confidence 77 888999888888888877665554431 111111112222233456667778999999999999999999
Q ss_pred CCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcchhh
Q 015825 267 GTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADHSV 339 (399)
Q Consensus 267 D~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~~v 339 (399)
|+.++.++++.++++.++ ..++++++|+++++...+++++.+.+|+++..++|+++...+....+
T Consensus 165 D~~~~~~i~~~i~~~~~~--------g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~~~~~ 229 (238)
T d1vpla_ 165 DVLNAREVRKILKQASQE--------GLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYKAQNI 229 (238)
T ss_dssp CHHHHHHHHHHHHHHHHT--------TCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHHTTCSSH
T ss_pred CHHHHHHHHHHHHHHHhc--------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhccCCchH
Confidence 999999999999886542 34899999999999999999999999999999999988765544443
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=99.90 E-value=9.7e-27 Score=215.82 Aligned_cols=210 Identities=10% Similarity=0.021 Sum_probs=151.6
Q ss_pred HHhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeec-----CCCccccccCCeeEEecChHH
Q 015825 115 KVVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHT-----TRAPRAMEKDGVHYHFTERSV 189 (399)
Q Consensus 115 ~~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~t-----tr~~~~~~~~~i~yvfq~~~l 189 (399)
+.+|-..+..+.++...+|++++|+||||||||||+++|+|+++|..| .+... ..++....+.+++|+||+..+
T Consensus 14 k~yg~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G-~I~~~G~~i~~~~~~~~~r~gi~~~~q~~~l 92 (240)
T d1ji0a_ 14 VYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKG-KIIFNGQDITNKPAHVINRMGIALVPEGRRI 92 (240)
T ss_dssp EEETTEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEECTTCCHHHHHHTTEEEECSSCCC
T ss_pred EEECCEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCcc-EEEecccccccccHHHHHHhcccccCccccc
Confidence 445655555555566779999999999999999999999999999999 55432 222223334578999999988
Q ss_pred HHHHHhhhhhHHHHHHhccccCCcHHH---HHHHHHcC--CceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHH
Q 015825 190 MEKAIKDGKFLEFASVHGNLYGTSVEA---VEAVADAG--KRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLR 264 (399)
Q Consensus 190 f~~~~~~~~~~E~~~~~~~~~g~~~~~---i~~~~~~g--~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~ 264 (399)
|+.+ ++.|++.+....+...... +....... .....+-.+..+....+|++..+.+++.+|++++||||++
T Consensus 93 ~~~l----tv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLllDEPt~ 168 (240)
T d1ji0a_ 93 FPEL----TVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSL 168 (240)
T ss_dssp CTTS----BHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEEEECTTT
T ss_pred CCcc----cHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEeeecCCCc
Confidence 8887 8888887665443322211 11111110 0000000011122234555666779999999999999999
Q ss_pred hCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcch
Q 015825 265 ARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADH 337 (399)
Q Consensus 265 ~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~ 337 (399)
++|+.++.++++.+++++++ ..++++++||++++.+.+++++.+.+|+++..+++.++++.|...
T Consensus 169 gLD~~~~~~i~~~i~~l~~~--------g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~~~v~ 233 (240)
T d1ji0a_ 169 GLAPILVSEVFEVIQKINQE--------GTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNEMVR 233 (240)
T ss_dssp TCCHHHHHHHHHHHHHHHHT--------TCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTCHHHH
T ss_pred CCCHHHHHHHHHHHHHHHhC--------CCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcCHHHH
Confidence 99999999999999987643 348999999999999999999999999999999999888776543
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.90 E-value=1.6e-26 Score=212.41 Aligned_cols=188 Identities=14% Similarity=0.087 Sum_probs=139.1
Q ss_pred CccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc-----c---ccccCCeeEEecChHHHHHHHhhhh
Q 015825 127 GVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP-----R---AMEKDGVHYHFTERSVMEKAIKDGK 198 (399)
Q Consensus 127 ~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~-----~---~~~~~~i~yvfq~~~lf~~~~~~~~ 198 (399)
++...+|++++|+||||||||||+++|+|+++|..| .+....+.. + ...++.+||+||++.+|+.+ +
T Consensus 25 sl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG-~I~~~g~~i~~~~~~~~~~~r~~~ig~v~Q~~~l~~~~----t 99 (230)
T d1l2ta_ 25 NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEG-EVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLL----T 99 (230)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEECTTCCHHHHHHHHHHHEEEECTTCCCCTTS----C
T ss_pred EEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcc-eeEECCEEcCcCChhhcchhhcceEEEEecchhhCcCc----c
Confidence 355679999999999999999999999999999999 565422211 1 11123589999999888877 8
Q ss_pred hHHHHHHhccc---cCCcHHHHHHHHHc-----CCc-eEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCC
Q 015825 199 FLEFASVHGNL---YGTSVEAVEAVADA-----GKR-CILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTE 269 (399)
Q Consensus 199 ~~E~~~~~~~~---~g~~~~~i~~~~~~-----g~~-~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~ 269 (399)
+.|++.+.... .+.+.+...+.+.+ ++. .+.+..|..+...++|++..+.+++.+|+++++||||+++|+.
T Consensus 100 v~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAraL~~~P~lLllDEPTs~LD~~ 179 (230)
T d1l2ta_ 100 ALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSK 179 (230)
T ss_dssp HHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCHH
T ss_pred HHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhhhhcCCCEEEecCCccccCHH
Confidence 99988775433 23344433332222 110 0112223334444567777888999999999999999999999
Q ss_pred cHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCC
Q 015825 270 TEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTS 327 (399)
Q Consensus 270 ~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~ 327 (399)
++.++++.+.++.++. ..|+|++|||+++| +.+++++.+.+|++++.+.+
T Consensus 180 ~~~~i~~~l~~l~~~~-------g~tii~vTHd~~~a-~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 180 TGEKIMQLLKKLNEED-------GKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHHHHHHHHTT-------CCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHHHHHhh-------CCEEEEECCCHHHH-HhCCEEEEEECCEEEEeccC
Confidence 9999999999987543 44899999999887 68999999999999987653
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=6.1e-24 Score=188.34 Aligned_cols=174 Identities=26% Similarity=0.587 Sum_probs=142.0
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHHHHhccccCC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFASVHGNLYGT 212 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~~~~~~~g~ 212 (399)
.++++|+||||+|||||++.|+...+..+...++||||+++..+.+|..|+|.+.+.|..+...+.|+|+..+.+++||+
T Consensus 3 ~k~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R~~E~~G~dY~Fvs~~~F~~~~~~g~fie~~~~~g~~YGt 82 (178)
T d1kgda_ 3 RKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQDISNNEYLEYGSHEDAMYGT 82 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHHHHTTCEEEEEEETTEEEEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCCCCCccccCccceeeehhhhhhheecCceEEEeeecccceee
Confidence 57999999999999999999998888777778999999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCC
Q 015825 213 SVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSG 292 (399)
Q Consensus 213 ~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~ 292 (399)
+...+...+..|..++++++++++..++.....++++|+.+|.+.. .....+.+ +++....+.++.. ..+
T Consensus 83 ~~~~i~~~~~~g~~~ildid~~g~~~lk~~~~~~~~IfI~pps~~~--------~~~~~~~~-~r~~~~~~~~e~~-~~~ 152 (178)
T d1kgda_ 83 KLETIRKIHEQGLIAILDVEPQALKVLRTAEFAPFVVFIAAPTITP--------GLNEDESL-QRLQKESDILQRT-YAH 152 (178)
T ss_dssp EHHHHHHHHHTTCEEEEECCGGGHHHHSSTTTCEEEEEEECCSCCT--------TSCCSHHH-HHHHHHHHHHHHH-HGG
T ss_pred eeecccchhccCceEEeccchhhhhhhhccccccceeeEecccccc--------ccchHHHH-HHHHHHHHHHHHH-hhc
Confidence 9999999999999999999999999999888889999999886431 11222333 3333323222211 134
Q ss_pred cceEEEeCCCHHHHHHHHHHhhcc
Q 015825 293 IFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 293 ~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
.||++|+|+|+++|+..+.+++.+
T Consensus 153 ~fD~vIvNddle~a~~el~~iI~~ 176 (178)
T d1kgda_ 153 YFDLTIINNEIDETIRHLEEAVEL 176 (178)
T ss_dssp GCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCEEEECCCHHHHHHHHHHHHHH
Confidence 679999999999999999987753
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=99.89 E-value=1e-24 Score=199.69 Aligned_cols=163 Identities=20% Similarity=0.263 Sum_probs=119.0
Q ss_pred ceEEcccccCCC------CCCCCCCCccCccccchhhhhccCCCceEEEEeCCCh---HH----HHHH---HHHhCCeEE
Q 015825 59 GNWLIPAVRGIE------PRPCKGHSAVLLNEDRILVIKKGSSSDDCLWFLEVDT---PY----VREQ---KKVVGAEVV 122 (399)
Q Consensus 59 ~~l~rp~~an~~------~~~~p~~~~~~l~~dr~L~~~~~~~~~~~i~~~k~D~---~~----~~~l---~~~~g~~v~ 122 (399)
|+|+||+|||+| ++.+|+|++.+| ||||++|+.++++|+|++||+|. ++ ++.+ ...+||+++
T Consensus 1 N~l~RP~vANiD~~~iV~s~~~P~~~~~~i--dR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~ 78 (231)
T d1t9ha2 1 NELIRPPICNVDQAVLVFSAVQPSFSTALL--DRFLVLVEANDIQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVY 78 (231)
T ss_dssp CEETTTTEECCCEEEEEEESTTTTCCHHHH--HHHHHHHHTTTCEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEE
T ss_pred CCCCCCCccccCEEEEEEECCCCCCCHHHH--HHHHHHHHHcCCCEEEEEecccccccHHHHHHHHHHHHHHhhccccce
Confidence 789999999999 677899999999 99999999999999999999993 11 2222 367899999
Q ss_pred EeccC-cc-------CCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceee-------ecCCCccccccCCeeEEecCh
Q 015825 123 AWSKG-VI-------GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVS-------HTTRAPRAMEKDGVHYHFTER 187 (399)
Q Consensus 123 ~~s~~-~~-------~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~-------~ttr~~~~~~~~~i~yvfq~~ 187 (399)
.+|.. .. .++|++.+|+|+||+|||||+|+|.+.....+| .++ |||+........+ |++..+|
T Consensus 79 ~~Sa~~~~gl~~L~~~l~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~-~vs~~~~rGrHTTt~~~l~~~~g-g~iiDTP 156 (231)
T d1t9ha2 79 LTSSKDQDSLADIIPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTN-EISEHLGRGKHTTRHVELIHTSG-GLVADTP 156 (231)
T ss_dssp ECCHHHHTTCTTTGGGGTTSEEEEEESHHHHHHHHHHHHCC--------------------CCCCCEEEETT-EEEESSC
T ss_pred eeecCChhHHHHHHHhhccceEEEECCCCccHHHHHHhhccHhHhhhc-ccccccCCCceeeeeEEEEecCC-CEEEECC
Confidence 99865 11 358999999999999999999999998777676 554 8998877765554 7775544
Q ss_pred H-----HH--HHHHhhhhhHHHHHHhccc-------cCCcHHHHHHHHHcCC
Q 015825 188 S-----VM--EKAIKDGKFLEFASVHGNL-------YGTSVEAVEAVADAGK 225 (399)
Q Consensus 188 ~-----lf--~~~~~~~~~~E~~~~~~~~-------~g~~~~~i~~~~~~g~ 225 (399)
. ++ ........|.|+..+...| ...+.|.+++++++|.
T Consensus 157 G~r~~~l~~~~~~~l~~~F~ei~~~~~~CkF~dC~H~~EpgCaV~~av~~g~ 208 (231)
T d1t9ha2 157 GFSSLEFTDIEEEELGYTFPDIREKSSSCKFRGCLHLKEPKCAVKQAVEDGE 208 (231)
T ss_dssp SCSSCCCTTCCHHHHGGGSHHHHHHGGGCSSTTCCSSSCSSCHHHHHHHHTS
T ss_pred ccccccccccCcccchhhhhhHHHHhCCCCCCCCCCCCCCCchHHHHHHcCC
Confidence 2 22 1222344788888887765 3578899999988876
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.88 E-value=6.9e-24 Score=193.54 Aligned_cols=162 Identities=19% Similarity=0.188 Sum_probs=119.3
Q ss_pred ceEEcccccCCC------CCCCCCCCccCccccchhhhhccCCCceEEEEeCCCh---HHHH---HHH--HHhCCeEEEe
Q 015825 59 GNWLIPAVRGIE------PRPCKGHSAVLLNEDRILVIKKGSSSDDCLWFLEVDT---PYVR---EQK--KVVGAEVVAW 124 (399)
Q Consensus 59 ~~l~rp~~an~~------~~~~p~~~~~~l~~dr~L~~~~~~~~~~~i~~~k~D~---~~~~---~l~--~~~g~~v~~~ 124 (399)
|.|+||.|||+| ++.+|+|++.+| ||||++++.++++|+|++||+|. +..+ .+. ...+|+++.+
T Consensus 1 N~l~RP~vANiD~vliV~s~~~P~~~~~~l--dR~Lv~a~~~~i~pvIvlnK~DL~~~~~~~~~~~~~~~~~~~~~v~~v 78 (225)
T d1u0la2 1 NLLTKPHVANVDQVILVVTVKMPETSTYII--DKFLVLAEKNELETVMVINKMDLYDEDDLRKVRELEEIYSGLYPIVKT 78 (225)
T ss_dssp CEETTTTEESCCEEEEEECSSTTCCCHHHH--HHHHHHHHHTTCEEEEEECCGGGCCHHHHHHHHHHHHHHTTTSCEEEC
T ss_pred CCcCCCCcccCCEEEEEEeCCCCCCCHHHH--HHHHHHHHHcCCCEEEEEeCcccCCHHHHHHHHHhhcccccceeEEEe
Confidence 789999999999 778899999999 99999999999999999999993 2222 222 2456999999
Q ss_pred ccC-cc-------CCCCcEEEEEcCCCCCHHHHHhhhhhccCCccccee-------eecCCCccccccCCeeEEecChHH
Q 015825 125 SKG-VI-------GNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSV-------SHTTRAPRAMEKDGVHYHFTERSV 189 (399)
Q Consensus 125 s~~-~~-------~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i-------~~ttr~~~~~~~~~i~yvfq~~~l 189 (399)
|.. .. .++|++.+|+|+||+|||||+|.|.+.....+| .+ .|||+..+.....+.+++..+|.+
T Consensus 79 Sa~~~~g~~~L~~~l~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~-~vs~~~~rGrHTTt~~~l~~l~~gg~iiDTPG~ 157 (225)
T d1u0la2 79 SAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVS-EVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGF 157 (225)
T ss_dssp CTTTCTTHHHHHHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC--------------CCCSCCEEECTTSCEEESSCSS
T ss_pred ccccchhHhhHHHHhcCCeEEEECCCCCCHHHHHHhhcchhhhhcc-CcccccCCCCccccceeEEEECCCcEEEeCCcc
Confidence 876 22 258999999999999999999999998777676 44 389999888877655788555432
Q ss_pred -----H--HHHHhhhhhHHHHHHhccc-------cCCcHHHHHHHHHcCC
Q 015825 190 -----M--EKAIKDGKFLEFASVHGNL-------YGTSVEAVEAVADAGK 225 (399)
Q Consensus 190 -----f--~~~~~~~~~~E~~~~~~~~-------~g~~~~~i~~~~~~g~ 225 (399)
+ ........|.|+.. ..| ...+.|.++++++.|.
T Consensus 158 r~~~l~~~~~~~l~~~F~e~~~--~~CkF~dC~H~~EpgCaVk~av~~g~ 205 (225)
T d1u0la2 158 ANLEINDIEPEELKHYFKEFGD--KQCFFSDCNHVDEPECGVKEAVENGE 205 (225)
T ss_dssp TTCCCCSSCHHHHGGGSTTSSS--CCCSSTTCCSSSCSSCHHHHHHHHTS
T ss_pred ccccccccCcchhhhhhhhHHh--CCCCCCCCCCCCCCCCHHHHHHHcCC
Confidence 1 11122235555532 222 4577889999988876
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.88 E-value=2.2e-25 Score=208.41 Aligned_cols=204 Identities=14% Similarity=0.148 Sum_probs=147.0
Q ss_pred HhCCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeec-----CCCccccccCCeeEEecChHHH
Q 015825 116 VVGAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHT-----TRAPRAMEKDGVHYHFTERSVM 190 (399)
Q Consensus 116 ~~g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~t-----tr~~~~~~~~~i~yvfq~~~lf 190 (399)
.+|-..+..+.++...+|++++|+||||||||||+++|+|+++|..| .+... ...+......+++|+||++.+|
T Consensus 13 ~yg~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G-~I~~~g~~i~~~~~~~~~~~gi~~v~Q~~~~~ 91 (254)
T d1g6ha_ 13 YFGEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEG-RVYFENKDITNKEPAELYHYGIVRTFQTPQPL 91 (254)
T ss_dssp EETTEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEECTTCCHHHHHHHTEEECCCCCGGG
T ss_pred EECCeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCc-EEEECCEeccchhHHHHHHhcCCccCCccccC
Confidence 34544445555566779999999999999999999999999999999 55532 2223333344799999999888
Q ss_pred HHHHhhhhhHHHHHHhccccCC-------------c-HHH---HHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEc
Q 015825 191 EKAIKDGKFLEFASVHGNLYGT-------------S-VEA---VEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFIC 252 (399)
Q Consensus 191 ~~~~~~~~~~E~~~~~~~~~g~-------------~-~~~---i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~ 252 (399)
+.+ ++.|++.+.....+. . ... +.+.++. +.....+-.+..+....+|++..+.+++.
T Consensus 92 ~~l----tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~Qrv~iAraL~~ 167 (254)
T d1g6ha_ 92 KEM----TVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHLYDRKAGELSGGQMKLVEIGRALMT 167 (254)
T ss_dssp GGS----BHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHT
T ss_pred CCC----eeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchhccCchhhCCcHHHHHHHHHHHHHh
Confidence 877 888888765332211 1 111 1112211 11111111122223334566666779999
Q ss_pred CCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 253 PPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 253 ~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+|++++||||++++|+.+.+++.+.+++++++ ..++++++||++++...+++++.+.+|+++..+++++++.
T Consensus 168 ~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~--------g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e~~~ 239 (254)
T d1g6ha_ 168 NPKMIVMDEPIAGVAPGLAHDIFNHVLELKAK--------GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 239 (254)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHT--------TCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHHHHH
T ss_pred CcCchhhcCCcccCCHHHHHHHHHHHHHHHHC--------CCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEecHHHHhh
Confidence 99999999999999999999999999987532 3589999999999999999999999999999999887553
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=99.83 E-value=1e-23 Score=195.54 Aligned_cols=190 Identities=15% Similarity=0.132 Sum_probs=135.4
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCC----ccccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRA----PRAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~----~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
+...+|++++|+||||||||||+++|+|++.|..| .+.....+ .....+..++|+||++.+|+ +++.|++
T Consensus 23 l~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-----~ti~eNi 96 (242)
T d1mv5a_ 23 FEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAG-EITIDGQPIDNISLENWRSQIGFVSQDSAIMA-----GTIRENL 96 (242)
T ss_dssp EEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBS-CEEETTEESTTTSCSCCTTTCCEECCSSCCCC-----EEHHHHT
T ss_pred EEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCC-EEEECCEEeccccHHHHHhheEEEccccccCC-----cchhhhe
Confidence 44569999999999999999999999999999999 55542211 11222346899999987664 2778887
Q ss_pred HHhccccCCcHHHHHHHHHc-CCce-----------EEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-GKRC-----------ILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g~~~-----------vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+..... .....+.+..+. +... .+.-....+...++|+...+.+|+.+|++++||||++++|+.++
T Consensus 97 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ililDEpts~LD~~~~ 175 (242)
T d1mv5a_ 97 TYGLEGD-YTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESE 175 (242)
T ss_dssp TSCTTSC-SCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSCSSCSSSC
T ss_pred ecccccc-cchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCCEEEecCCccccCHHHH
Confidence 6543221 223333322221 1111 11100111233356667777899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
..+++.|+++.+ ..|+++++|+++.+ ..+++++.+.+|+++..|++.+++..+
T Consensus 176 ~~i~~~l~~l~~---------~~Tvi~itH~l~~~-~~~D~i~vl~~G~iv~~G~~~eLl~~~ 228 (242)
T d1mv5a_ 176 SMVQKALDSLMK---------GRTTLVIAHRLSTI-VDADKIYFIEKGQITGSGKHNELVATH 228 (242)
T ss_dssp CHHHHHHHHHHT---------TSEEEEECCSHHHH-HHCSEEEEEETTEECCCSCHHHHHHHC
T ss_pred HHHHHHHHHHcC---------CCEEEEEECCHHHH-HhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 999999987642 24899999999866 569999999999999999999888543
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.83 E-value=4.7e-24 Score=198.87 Aligned_cols=193 Identities=16% Similarity=0.111 Sum_probs=136.2
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
+...+|++++|+||||||||||+++|+|+++|..| .+.....+. ....++.++|+||++.+|+ +++.+++
T Consensus 35 l~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~-----~tv~eni 108 (251)
T d1jj7a_ 35 FTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGG-QLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFG-----RSLQENI 108 (251)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEEGGGBCHHHHHHHEEEECSSCCCCS-----SBHHHHH
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcC-EEEECCEecchhhhHHHHHHhhhccccccccC-----cchhhhh
Confidence 44569999999999999999999999999999999 665432221 1112345899999987664 2788888
Q ss_pred HHhccccCCcHHHHHHHHHcC-----------CceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHH
Q 015825 204 SVHGNLYGTSVEAVEAVADAG-----------KRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETED 272 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~g-----------~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e 272 (399)
.+..................+ ....++-.+..+...++|+...+.+|+.+|++++|||||+++|+.++.
T Consensus 109 ~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal~~~p~ililDEpTs~LD~~~~~ 188 (251)
T d1jj7a_ 109 AYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQL 188 (251)
T ss_dssp HCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHHTTCCSEEEEESTTTTCCHHHHH
T ss_pred hhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeeccccCCcEEEecCcCcccChhhHH
Confidence 775332222112111111111 111111111223334566677777999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 273 QILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 273 ~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
.+.+.|.++.++. ..|+++++|+++.+ +.+|+++.+.+|+++..|++.+++..+
T Consensus 189 ~i~~~l~~l~~~~-------~~Tvi~itH~l~~~-~~aDrI~vl~~G~iv~~Gt~~eLl~~~ 242 (251)
T d1jj7a_ 189 QVEQLLYESPERY-------SRSVLLITQHLSLV-EQADHILFLEGGAIREGGTHQQLMEKK 242 (251)
T ss_dssp HHHHHHHTCGGGG-------GCEEEEECSCHHHH-HTCSEEEEEETTEEEEEECHHHHHHHT
T ss_pred HHHHHHHHHhhhc-------CCEEEEEeCCHHHH-HhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 9999888754332 34899999999754 679999999999999999999887654
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=99.83 E-value=1.1e-23 Score=195.08 Aligned_cols=196 Identities=15% Similarity=0.155 Sum_probs=140.9
Q ss_pred EEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhh
Q 015825 122 VAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 122 ~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
+..+.++...+|+.++|+||||||||||+++|+|+++|..| .+.....+. ....++.++|+||++.+|. +
T Consensus 18 vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G-~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-----~ 91 (241)
T d2pmka1 18 ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG-QVLIDGHDLALADPNWLRRQVGVVLQDNVLLN-----R 91 (241)
T ss_dssp EEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEE-EEEETTEETTTSCHHHHHHHEEEECSSCCCTT-----S
T ss_pred eEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCC-EEEECCEEecccchhhhhceEEEEecccccCC-----c
Confidence 33334455679999999999999999999999999999988 665432221 1112345899999986653 3
Q ss_pred hhHHHHHHhccccCCcHHHHHHHHHc-CCce-----------EEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHh
Q 015825 198 KFLEFASVHGNLYGTSVEAVEAVADA-GKRC-----------ILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRA 265 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~~~~~i~~~~~~-g~~~-----------vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~ 265 (399)
++.+++.+..... ..+.+..+.+. +... .++-.+..+...++|++..+.+|+.+|++++||||+++
T Consensus 92 Ti~eNi~~~~~~~--~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ililDEpts~ 169 (241)
T d2pmka1 92 SIIDNISLANPGM--SVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSA 169 (241)
T ss_dssp BHHHHHCTTSTTC--CHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCSEEEECCCCSC
T ss_pred cccccccccCccc--cHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccchhhhhCCccc
Confidence 8889987754322 33333332221 1111 11111122233355666777799999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 266 RGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 266 lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
+|+.++..+.+.+.++.+ ..|+|+++|+++.+ ..+++++.+.+|+++..|++.+++..|.
T Consensus 170 LD~~~~~~i~~~l~~l~~---------~~Tvi~itH~l~~~-~~~D~i~vl~~G~Iv~~G~~~ell~~~~ 229 (241)
T d2pmka1 170 LDYESEHVIMRNMHKICK---------GRTVIIIAHRLSTV-KNADRIIVMEKGKIVEQGKHKELLSEPE 229 (241)
T ss_dssp CCHHHHHHHHHHHHHHHT---------TSEEEEECSSGGGG-TTSSEEEEEETTEEEEEECHHHHHHSTT
T ss_pred cCHHHHHHHHHHHHHHhC---------CCEEEEEECCHHHH-HhCCEEEEEECCEEEEECCHHHHHhCCC
Confidence 999999999999887642 23899999999765 6799999999999999999999987764
|
| >d1kjwa2 c.37.1.1 (A:526-724) Guanylate kinase-like domain of Psd-95 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Psd-95 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.82 E-value=2.7e-20 Score=167.52 Aligned_cols=180 Identities=39% Similarity=0.614 Sum_probs=154.3
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEec-ChHHHHHHHhhhhhHHHHHHhcccc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFT-ERSVMEKAIKDGKFLEFASVHGNLY 210 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq-~~~lf~~~~~~~~~~E~~~~~~~~~ 210 (399)
..++++|+|| ||+|+.+.|+..++..++..++||||+++..+.+|+.|+|. +.+.|..++..+.|+|+..+.+++|
T Consensus 8 ~~Rpivi~Gp---~K~ti~~~L~~~~p~~f~~~is~TTR~~R~~E~dG~dY~Fv~~~e~F~~~i~~~~fiE~~~~~g~~Y 84 (199)
T d1kjwa2 8 YARPIIILGP---TKDRANDDLLSEFPDKFGSCVPHTTRPKREYEIDGRDYHFVSSREKMEKDIQAHKFIEAGQYNSHLY 84 (199)
T ss_dssp SCCCEEEEST---THHHHHHHHHHHCTTTEECCCCEECSCCCTTCCBTTTBEECSCHHHHHHHHHTTCEEEEEEETTEEE
T ss_pred CCCCEEEECc---CHHHHHHHHHHhCccceeecccccccCCCCCCCCCcccchhhhHHHHHHHHhhccceeeeeecCCcc
Confidence 4589999998 49999999999988888889999999999999999999997 6677999999999999999999999
Q ss_pred CCcHHHHHHHHHcCCceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccC
Q 015825 211 GTSVEAVEAVADAGKRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKS 290 (399)
Q Consensus 211 g~~~~~i~~~~~~g~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~ 290 (399)
|++...+...+..|+.++++++++|+..++.....++++|+.+|+++.+.+ +..+ .+.+++++++..+...... .
T Consensus 85 Gt~~~~i~~~~~~gk~~lldid~~g~~~lk~~~~~~i~IfI~pps~e~l~~-l~kr--~~~~~i~~r~~~~~~~e~~--~ 159 (199)
T d1kjwa2 85 GTSVQSVREVAEQGKHCILDVSANAVRRLQAAHLHPIAIFIRPRSLENVLE-INKR--ITEEQARKAFDRATKLEQE--F 159 (199)
T ss_dssp EEEHHHHHHHHHTTCEEEECCCTTHHHHHHHTTCCCEEEEECCSSHHHHHH-HCTT--SCHHHHHHHHHHHHHHHHH--H
T ss_pred ceeeeEEEehhcCCCcccccccchHHhhhhhhccceeEEeeccccHHHHHh-hhcc--ccHHHHHHHHHHHHHHHHH--h
Confidence 999999999999999999999999999999888999999999999887754 4444 3667888888766432111 1
Q ss_pred CCcceEEEeCCCHHHHHHHHHHhhcccCC
Q 015825 291 SGIFDHILYNDKLEECYENLKKHLGLDGS 319 (399)
Q Consensus 291 ~~~~t~Viv~hdleea~~~l~~ii~~~~~ 319 (399)
.+.||++|+|+|+++++..+..+|.....
T Consensus 160 ~~~fd~vI~Nddle~a~~~l~~iI~~~~~ 188 (199)
T d1kjwa2 160 TECFSAIVEGDSFEEIYHKVKRVIEDLSG 188 (199)
T ss_dssp GGGCSEEECCSSHHHHHHHHHHHHHHHSC
T ss_pred hccCCEEEECcCHHHHHHHHHHHHHHhcC
Confidence 34689999999999999999998866544
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.81 E-value=7.3e-23 Score=190.90 Aligned_cols=190 Identities=15% Similarity=0.101 Sum_probs=136.3
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
+...+|++++|+||||||||||+++|+|+++|..| .+....... ....+..++|+||++.+|.. ++.++.
T Consensus 36 l~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G-~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~-----ti~~n~ 109 (253)
T d3b60a1 36 LKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEG-HILMDGHDLREYTLASLRNQVALVSQNVHLFND-----TVANNI 109 (253)
T ss_dssp EEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEE-EEEETTEETTTBCHHHHHHTEEEECSSCCCCSS-----BHHHHH
T ss_pred EEEcCCCEEEEECCCCChHHHHHHHHhcccCCCcc-EEEECCcccchhhhhhhhheEEEEeeccccCCc-----chhhhh
Confidence 44569999999999999999999999999999989 665432221 11223458999999876642 666776
Q ss_pred HHhccccCCcHHHHHHHHHcCC-ceE-----------EecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADAGK-RCI-----------LDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~g~-~~v-----------ldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+.. ......+.+.++++... ..+ +.-.+..+...++|++..+.+|+.+|++++||||++++|+.++
T Consensus 110 ~~~~-~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARal~~~p~ililDEpts~LD~~~~ 188 (253)
T d3b60a1 110 AYAR-TEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESE 188 (253)
T ss_dssp HTTT-TSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHH
T ss_pred hhcC-cccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHH
Confidence 6542 22334555554443211 111 1111111222345566677799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCC
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLP 334 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p 334 (399)
..+.+.|+++.+ ..|+|+++|+++.+ ..+++++.+.+|+++..|++.+++...
T Consensus 189 ~~i~~~l~~l~~---------~~Tvi~itH~l~~~-~~~D~v~vl~~G~Iv~~G~~~eLl~~~ 241 (253)
T d3b60a1 189 RAIQAALDELQK---------NRTSLVIAHRLSTI-EQADEIVVVEDGIIVERGTHSELLAQH 241 (253)
T ss_dssp HHHHHHHHHHHT---------TSEEEEECSCGGGT-TTCSEEEEEETTEEEEEECHHHHHHHT
T ss_pred HHHHHHHHHhcc---------CCEEEEEECCHHHH-HhCCEEEEEECCEEEEECCHHHHHhCC
Confidence 999999988642 23899999999755 679999999999999999999888543
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.80 E-value=1.5e-22 Score=188.81 Aligned_cols=190 Identities=15% Similarity=0.116 Sum_probs=137.7
Q ss_pred ccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCc----cccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 128 VIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAP----RAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 128 ~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~----~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
+...+|++++|+||||||||||+++|.|+++|..| .+....... ....+..++|+||++.+|. +++.||+
T Consensus 39 l~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G-~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~lf~-----~Ti~eNi 112 (255)
T d2hyda1 39 LSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSG-QILIDGHNIKDFLTGSLRNQIGLVQQDNILFS-----DTVKENI 112 (255)
T ss_dssp EEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEE-EEEETTEEGGGSCHHHHHHTEEEECSSCCCCS-----SBHHHHH
T ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHHhcCCcccc-ccccCCEEcccCCHHHhhheeeeeeccccCCC-----CCHHHHH
Confidence 44569999999999999999999999999999999 665432221 1122346999999986653 3889998
Q ss_pred HHhccccCCcHHHHHHHHHc-CCceE-----------EecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcH
Q 015825 204 SVHGNLYGTSVEAVEAVADA-GKRCI-----------LDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETE 271 (399)
Q Consensus 204 ~~~~~~~g~~~~~i~~~~~~-g~~~v-----------ldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~ 271 (399)
.+.... ...+.+.++++. +...+ +.-....+...++|+...+.+|+.+|++++||||++++|+.++
T Consensus 113 ~~g~~~--~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal~~~p~ililDEpts~LD~~t~ 190 (255)
T d2hyda1 113 LLGRPT--ATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESE 190 (255)
T ss_dssp GGGCSS--CCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHH
T ss_pred hccCcC--CCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHH
Confidence 875432 234444444332 11111 1101111222345666777799999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCc
Q 015825 272 DQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPA 335 (399)
Q Consensus 272 e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~ 335 (399)
..+.+.|..+.. ..|+|+++|+++.+ ..+|+++.+.+|+++..|++.+++..+.
T Consensus 191 ~~i~~~l~~l~~---------~~TvI~itH~~~~~-~~~D~ii~l~~G~iv~~G~~~eLl~~~~ 244 (255)
T d2hyda1 191 SIIQEALDVLSK---------DRTTLIVAHRLSTI-THADKIVVIENGHIVETGTHRELIAKQG 244 (255)
T ss_dssp HHHHHHHHHHTT---------TSEEEEECSSGGGT-TTCSEEEEEETTEEEEEECHHHHHHTTS
T ss_pred HHHHHHHHHHhc---------CCEEEEEeCCHHHH-HhCCEEEEEECCEEEEECCHHHHHhCCc
Confidence 999998887532 23889999999755 6799999999999999999999887654
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=99.77 E-value=1.6e-21 Score=179.56 Aligned_cols=194 Identities=13% Similarity=0.103 Sum_probs=126.6
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccc----cccCCeeEEecChHHHHHHHhhhhhHHHHH
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRA----MEKDGVHYHFTERSVMEKAIKDGKFLEFAS 204 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~----~~~~~i~yvfq~~~lf~~~~~~~~~~E~~~ 204 (399)
+..+|++++|+||||||||||+++|+|+.+ ..| .+.....+... ......+|+++........ ++.++..
T Consensus 21 ~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~~-~~G-~I~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~ 94 (231)
T d1l7vc_ 21 EVRAGEILHLVGPNGAGKSTLLARMAGMTS-GKG-SIQFAGQPLEAWSATKLALHRAYLSQQQTPPFAT----PVWHYLT 94 (231)
T ss_dssp EEETTCEEECBCCTTSSHHHHHHHHHTSCC-CSS-EEEESSSBGGGSCHHHHHHHEEEECSCCCCCSSC----BHHHHHH
T ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCC-Cce-EEEECCEECCcCCHHHHHhhceeeeccccCCccc----cHHHHhh
Confidence 446999999999999999999999999765 567 55443322111 1112357887764321111 3334443
Q ss_pred HhccccCCcHHHHHHHHHc-CCceEEecchhhHHHHHcCCcceeEEEEc-------CCChHHHHHHHHhCCCCcHHHHHH
Q 015825 205 VHGNLYGTSVEAVEAVADA-GKRCILDIDVQGARSVRASPLDAIFIFIC-------PPSMEELEERLRARGTETEDQILK 276 (399)
Q Consensus 205 ~~~~~~g~~~~~i~~~~~~-g~~~vldld~~g~~~l~~~~~~~~~ili~-------~P~lllLDEpl~~lD~~~~e~i~~ 276 (399)
+.... ....+.+.+.+.. +....++-.+..+....+|+...+.+++. .|++++||||++++|+.++..+.+
T Consensus 95 ~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~ 173 (231)
T d1l7vc_ 95 LHQHD-KTRTELLNDVAGALALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDK 173 (231)
T ss_dssp HHCSC-TTCHHHHHHHHHHTTCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHH
T ss_pred hccch-hhHHHHHHHHHHhcCCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 33221 1223333333322 11111111222222233444545556664 568999999999999999999999
Q ss_pred HHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccCCCcch
Q 015825 277 RLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGIDLPADH 337 (399)
Q Consensus 277 ~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~~p~~~ 337 (399)
.++.+.++ ..++++++||++++...+++++.+.+|+++..++++++++.|...
T Consensus 174 ~i~~l~~~--------g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~~~l~ 226 (231)
T d1l7vc_ 174 ILSALCQQ--------GLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNLA 226 (231)
T ss_dssp HHHHHHHT--------TCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCHHHHH
T ss_pred HHHHHHhC--------CCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCChHHH
Confidence 99887542 348999999999999999999999999999999999888776433
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.77 E-value=1.2e-21 Score=185.23 Aligned_cols=188 Identities=16% Similarity=0.091 Sum_probs=132.1
Q ss_pred CCeEEEeccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhh
Q 015825 118 GAEVVAWSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDG 197 (399)
Q Consensus 118 g~~v~~~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~ 197 (399)
.+..+..+.++...+|++++|+||||||||||+++|+|+++|..| .+.+.. .++|++|.+.+|+ +
T Consensus 47 ~g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G-~I~~~g---------~i~~v~Q~~~l~~-----~ 111 (281)
T d1r0wa_ 47 VGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEG-IIKHSG---------RVSFCSQFSWIMP-----G 111 (281)
T ss_dssp TTCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEE-EEECCS---------CEEEECSSCCCCS-----E
T ss_pred CCCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCc-EEEECC---------EEEEEeccccccC-----c
Confidence 344455556666789999999999999999999999999999999 665433 2799999876654 2
Q ss_pred hhHHHHHHhccccCCcHHHHHHHHHcC------------CceEEecchhhHHHHHcCCcceeEEEEcCCChHHHHHHHHh
Q 015825 198 KFLEFASVHGNLYGTSVEAVEAVADAG------------KRCILDIDVQGARSVRASPLDAIFIFICPPSMEELEERLRA 265 (399)
Q Consensus 198 ~~~E~~~~~~~~~g~~~~~i~~~~~~g------------~~~vldld~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~ 265 (399)
++.+++.+..... .......++.. ....+.-....+...++|++..+.+|+.+|++++||||+++
T Consensus 112 tv~eni~~~~~~~---~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPts~ 188 (281)
T d1r0wa_ 112 TIKENIIFGVSYD---EYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGY 188 (281)
T ss_dssp EHHHHHTTTSCCC---HHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCCCS
T ss_pred eeecccccccccc---chHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCcccc
Confidence 7888887653321 22222222211 11111111111233455667777899999999999999999
Q ss_pred CCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCCCHHHHHHHHHHhhcccCCeeeecCCCccccC
Q 015825 266 RGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYNDKLEECYENLKKHLGLDGSIATNHQTSPKGID 332 (399)
Q Consensus 266 lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~hdleea~~~l~~ii~~~~~~~~~~~~~~~~~~ 332 (399)
+|+.+++.+.+.+... . ....++|+++|+++. +..+|+++.+.+|+++..|++.++..
T Consensus 189 LD~~~~~~i~~~~~~~---~-----~~~~tvi~itH~~~~-l~~aDrI~vl~~G~i~~~Gt~~eL~~ 246 (281)
T d1r0wa_ 189 LDVFTEEQVFESCVCK---L-----MANKTRILVTSKMEH-LRKADKILILHQGSSYFYGTFSELQS 246 (281)
T ss_dssp SCHHHHHHHHHHCCCC---C-----TTTSEEEEECSCHHH-HHTCSEEEEEETTEEEEEECHHHHHH
T ss_pred CCHHHHHHHHHHHHHH---h-----hCCCEEEEEechHHH-HHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9998877776543221 1 123488999999965 57899999999999999999988864
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=99.69 E-value=6.5e-19 Score=158.42 Aligned_cols=153 Identities=15% Similarity=0.214 Sum_probs=106.5
Q ss_pred eccCccCCCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhhHHHH
Q 015825 124 WSKGVIGNVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKFLEFA 203 (399)
Q Consensus 124 ~s~~~~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~~E~~ 203 (399)
-+.+....+|++++|+||||||||||+++|+|+++|..| .+.....+... ....++|++|+..++..+ ++.+++
T Consensus 18 ~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G-~I~~~g~~i~~-~~~~i~~~~~~~~~~~~~----t~~~~l 91 (200)
T d1sgwa_ 18 ERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKG-EIIYNGVPITK-VKGKIFFLPEEIIVPRKI----SVEDYL 91 (200)
T ss_dssp EEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEE-EEEETTEEGGG-GGGGEEEECSSCCCCTTS----BHHHHH
T ss_pred eceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCC-EEEECCEehhH-hcCcEEEEeecccCCCCc----CHHHHH
Confidence 334455679999999999999999999999999999999 66654433322 233578999886554444 556666
Q ss_pred HHhccccCC--cHHHHHHHHHcCCceEEec--chhhHHHHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHH
Q 015825 204 SVHGNLYGT--SVEAVEAVADAGKRCILDI--DVQGARSVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLR 279 (399)
Q Consensus 204 ~~~~~~~g~--~~~~i~~~~~~g~~~vldl--d~~g~~~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~ 279 (399)
.+....|+. ...++...++.-. ++++ .+..+....+++...+.+++.+|++.+||||++++|+.++..+.+.+.
T Consensus 92 ~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~LSgG~~qrv~ia~al~~~~~llllDEPt~gLD~~~~~~i~~~l~ 169 (200)
T d1sgwa_ 92 KAVASLYGVKVNKNEIMDALESVE--VLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSIL 169 (200)
T ss_dssp HHHHHHTTCCCCHHHHHHHHHHTT--CCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHH
T ss_pred HHHHHhcCCccCHHHHHHHHHHcC--CcccccccCcCCCcHHHHHHHHHHHhcCCCEEEEcCcccccCHHHHHHHHHHHH
Confidence 655555543 3455554444321 1122 111222334566677779999999999999999999999999999998
Q ss_pred HHHHH
Q 015825 280 NAKEE 284 (399)
Q Consensus 280 ~~~~~ 284 (399)
++.++
T Consensus 170 ~~~~~ 174 (200)
T d1sgwa_ 170 EILKE 174 (200)
T ss_dssp HHHHH
T ss_pred HHHhC
Confidence 87654
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=98.37 E-value=7.8e-06 Score=70.44 Aligned_cols=73 Identities=18% Similarity=0.260 Sum_probs=44.6
Q ss_pred cceeEEEEcCCChHHHHHHHHhC------CCCcHHHHHHHHHHHHHHH----HhccCCCcceEEEeCCCHHHHHHHHHHh
Q 015825 244 LDAIFIFICPPSMEELEERLRAR------GTETEDQILKRLRNAKEEI----KQGKSSGIFDHILYNDKLEECYENLKKH 313 (399)
Q Consensus 244 ~~~~~ili~~P~lllLDEpl~~l------D~~~~e~i~~~L~~~~~~l----~~~~~~~~~t~Viv~hdleea~~~l~~i 313 (399)
..+..++..+.+..++-+|+..+ ..+..+.+++|+..+++.. +.++..+.+..|-.+.+.++++..+..+
T Consensus 109 ~~~~~vi~l~~~~~~~~~R~~~~~~~~~~~~d~~e~~~~Rl~~y~~~~~~~~~~y~~~~~~~~Id~~~~ieeV~~~I~~i 188 (194)
T d1qf9a_ 109 VDTKFVLFFDCPEEVMTQRLLKRGESSGRSDDNIESIKKRFNTFNVQTKLVIDHYNKFDKVKIIPANRDVNEVYNDVENL 188 (194)
T ss_dssp CEEEEEEEEECCHHHHHHHHHHHHTTSCCTTCSHHHHHHHHHHHHHTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHH
T ss_pred ccccEEEEeecchHHHHHHHHhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHH
Confidence 33444444445568888888653 3456788999988877642 2222222222233455899999999887
Q ss_pred hcc
Q 015825 314 LGL 316 (399)
Q Consensus 314 i~~ 316 (399)
+..
T Consensus 189 i~~ 191 (194)
T d1qf9a_ 189 FKS 191 (194)
T ss_dssp HHH
T ss_pred HHH
Confidence 653
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.36 E-value=2e-07 Score=78.77 Aligned_cols=28 Identities=21% Similarity=0.247 Sum_probs=25.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
+.|++++|.||+||||||+.+.|+..+.
T Consensus 2 ~~g~iI~l~G~~GsGKSTia~~La~~lg 29 (176)
T d1zp6a1 2 LGGNILLLSGHPGSGKSTIAEALANLPG 29 (176)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999999988653
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.22 E-value=2.9e-05 Score=66.90 Aligned_cols=160 Identities=17% Similarity=0.263 Sum_probs=80.7
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHHHHHHHhhhhh--HHHHHHhccc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSVMEKAIKDGKF--LEFASVHGNL 209 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~lf~~~~~~~~~--~E~~~~~~~~ 209 (399)
+++++.|+||+||||||+.+.|+..+ |.....+ .+++.......+. .+...+....
T Consensus 7 ~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is~------------------g~llr~~~~~~~~~~~~~~~~~~~~ 64 (194)
T d3adka_ 7 KSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLST------------------GDLLRAEVSSGSARGKMLSEIMEKG 64 (194)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEEH------------------HHHHHHHHHHTCHHHHHHHHHHTTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh----CCeeEec------------------cHHHHHHHHHhHhhhhhhHHHHhhc
Confidence 56899999999999999999999865 3111111 1111111111000 0011111111
Q ss_pred cCCcHHHHH----HHHH----cCCceEEecchhhHHH---HHcC--CcceeEEEEcCCChHHHHHH------HHhCCCCc
Q 015825 210 YGTSVEAVE----AVAD----AGKRCILDIDVQGARS---VRAS--PLDAIFIFICPPSMEELEER------LRARGTET 270 (399)
Q Consensus 210 ~g~~~~~i~----~~~~----~g~~~vldld~~g~~~---l~~~--~~~~~~ili~~P~lllLDEp------l~~lD~~~ 270 (399)
.-.+.+.+. ..+. .....++|..|....+ +... .+.....+..+ ..++.+| ...|..++
T Consensus 65 ~~~~~~~~~~~~~~~l~~~~~~~~g~ildg~pr~~~qa~~~~~~~~~~~~~~~~~~~--~~~~~~r~~~~~~~~~r~~d~ 142 (194)
T d3adka_ 65 QLVPLETVLDMLRDAMVAKVDTSKGFLIDGYPREVKQGEEFERKIGQPTLLLYVDAG--PETMTKRLLKRGETSGRVDDN 142 (194)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTTCSCEEEESCCSSHHHHHHHHHHTCCCSEEEEEECC--HHHHHHHHHHHHHHHTCCCCC
T ss_pred cCCchheeeeehhhhhhhcccccccceeeeccchhHHHHHHHHHhCCccchhccccc--hhhhHhHhhhhcccccCCcch
Confidence 111222221 1111 1234677765543333 2221 22333333333 4555554 34555667
Q ss_pred HHHHHHHHHHHHHH----HHhccCCCcceEEEeCCCHHHHHHHHHHhhc
Q 015825 271 EDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 271 ~e~i~~~L~~~~~~----l~~~~~~~~~t~Viv~hdleea~~~l~~ii~ 315 (399)
.+.+++|+..+.++ +++++..+.+..|-.+.+++++++.+...+.
T Consensus 143 ~e~i~~R~~~y~~~~~~~~~~y~~~~~~~~Id~~~s~~eV~~~I~~~i~ 191 (194)
T d3adka_ 143 EETIKKRLETYYKATEPVIAFYEKRGIVRKVNAEGSVDDVFSQVCTHLD 191 (194)
T ss_dssp STTHHHHHHHHHHHTHHHHHHHTTTTCEEEEECCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence 78899999988775 3444433333334455599999988877653
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=98.20 E-value=2.3e-06 Score=71.82 Aligned_cols=28 Identities=25% Similarity=0.360 Sum_probs=25.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
..+++++|+||+||||||+.+.|+..+.
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l~ 31 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQLH 31 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999999998763
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.11 E-value=7e-05 Score=64.36 Aligned_cols=90 Identities=17% Similarity=0.237 Sum_probs=50.2
Q ss_pred CceEEecchhhHH---HHHcCC-cceeEEEEcCCChHHHHHHHH------hCCCCcHHHHHHHHHHHHHH----HHhccC
Q 015825 225 KRCILDIDVQGAR---SVRASP-LDAIFIFICPPSMEELEERLR------ARGTETEDQILKRLRNAKEE----IKQGKS 290 (399)
Q Consensus 225 ~~~vldld~~g~~---~l~~~~-~~~~~ili~~P~lllLDEpl~------~lD~~~~e~i~~~L~~~~~~----l~~~~~ 290 (399)
...+++..+.... .+.... .....+++.- +.+.+-+|.. +++....+.+++++..+.++ +++++.
T Consensus 90 ~~~vl~g~p~~~~q~~~~~~~~~~~~~~i~l~~-~~e~~~~R~~~~~~~~~r~~~~~e~~~~r~~~y~~~~~~l~~~y~~ 168 (196)
T d1ukza_ 90 HKFLIDGFPRKMDQAISFERDIVESKFILFFDC-PEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKETSMPVIEYFET 168 (196)
T ss_dssp CEEEEETCCCSHHHHHHHHHHTCCCSEEEEEEC-CHHHHHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHTTHHHHHHHHT
T ss_pred CceeeeccchhHHHHHHHHHhccccceeeccCC-CHHHHHHHHHhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3556665443332 222222 2223344433 3566666644 45667888999999887754 223332
Q ss_pred CCcceEEEeCCCHHHHHHHHHHhhc
Q 015825 291 SGIFDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 291 ~~~~t~Viv~hdleea~~~l~~ii~ 315 (399)
.+.+..|-.+.+.++++..+..++.
T Consensus 169 ~~~~~~Id~~~s~eeV~~~I~~~i~ 193 (196)
T d1ukza_ 169 KSKVVRVRCDRSVEDVYKDVQDAIR 193 (196)
T ss_dssp TTCEEEEECSSCHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCHHHHHHHHHHHHH
Confidence 3333333345589999998887664
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.08 E-value=0.00012 Score=62.58 Aligned_cols=72 Identities=15% Similarity=0.228 Sum_probs=44.8
Q ss_pred ceeEEEEcCCChHHHHHHHHhC------CCCcHHHHHHHHHHHHHHH----HhccCCCcceEEEeCCCHHHHHHHHHHhh
Q 015825 245 DAIFIFICPPSMEELEERLRAR------GTETEDQILKRLRNAKEEI----KQGKSSGIFDHILYNDKLEECYENLKKHL 314 (399)
Q Consensus 245 ~~~~ili~~P~lllLDEpl~~l------D~~~~e~i~~~L~~~~~~l----~~~~~~~~~t~Viv~hdleea~~~l~~ii 314 (399)
..-.+++.+.+..++.+++..| ..++.+.+.+++..+.++. +.++..+.+..|-.+.+++++++.+.+++
T Consensus 111 ~~~~vi~l~~~~~~~~~r~~~R~~~~~r~~~~~e~i~~r~~~y~~~~~~l~~~y~~~~~~~~IDa~~s~eeV~~~I~~il 190 (194)
T d1teva_ 111 DVSFVLFFDCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQSTKPIIDLYEEMGKVKKIDASKSVDEVFDEVVQIF 190 (194)
T ss_dssp EEEEEEEEECCHHHHHHHHHHHHHTSSCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHH
T ss_pred cccEEEeecCcchhheeecccCCCcccCCccchHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHH
Confidence 3334444555567777777654 4567888899888877652 22222233333444568999999988866
Q ss_pred cc
Q 015825 315 GL 316 (399)
Q Consensus 315 ~~ 316 (399)
..
T Consensus 191 ~k 192 (194)
T d1teva_ 191 DK 192 (194)
T ss_dssp HH
T ss_pred hc
Confidence 54
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=98.05 E-value=0.0001 Score=62.92 Aligned_cols=59 Identities=19% Similarity=0.217 Sum_probs=37.6
Q ss_pred CChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhcc--CCCcceEEEeCCCHHHHHHHHHHhh
Q 015825 254 PSMEELEERLRARGTETEDQILKRLRNAKEEIKQGK--SSGIFDHILYNDKLEECYENLKKHL 314 (399)
Q Consensus 254 P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~--~~~~~t~Viv~hdleea~~~l~~ii 314 (399)
.+.+.+.+|+..+|. .+.+++++..++++..... +...+..|-.+.+++++++.+.+++
T Consensus 115 ~~~e~l~~R~~~~~~--~e~~~~rl~~y~~~~~~l~~~y~~~~~~Id~~~~idev~~~I~~~l 175 (189)
T d1zaka1 115 VPDELLVERVVFDDT--EEKVKLRLETYYQNIESLLSTYENIIVKVQGDATVDAVFAKIDELL 175 (189)
T ss_dssp CCHHHHHHHHTTTCC--TTHHHHHHHHHHHHHHHHHHTTCCCEEEEECSSCHHHHHHHHHHHH
T ss_pred hhhhhhhhhccccch--HHHHHHHHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHH
Confidence 346889999988774 4677888888776533210 1222222234668999998887765
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=98.04 E-value=8.2e-05 Score=63.55 Aligned_cols=62 Identities=13% Similarity=0.138 Sum_probs=40.4
Q ss_pred CChHHHHHHHHhCC---CCcHHHHHHHHHHHHHHH----HhccCCCcceEEEeCCCHHHHHHHHHHhhc
Q 015825 254 PSMEELEERLRARG---TETEDQILKRLRNAKEEI----KQGKSSGIFDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 254 P~lllLDEpl~~lD---~~~~e~i~~~L~~~~~~l----~~~~~~~~~t~Viv~hdleea~~~l~~ii~ 315 (399)
.+...+.+|+..|. ..+.+.+++++..++++. +.+...+.+..|-.+.+++++++.+..++.
T Consensus 118 v~~~~~~~r~~~r~~~~d~~~e~i~~R~~~y~~~~~p~~~~y~~~~~~~~Id~~~s~eeV~~~I~~~l~ 186 (190)
T d1ak2a1 118 IPDSLLIRRITGRLIHSDDNKKALKIRLEAYHTQTTPLVEYYSKRGIHSAIDASQTPDVVFASILAAFS 186 (190)
T ss_dssp CCHHHHHHHHHTCEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred chHHHHHhhhccCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence 34677778887663 457888999988887652 222223333333445589999988877664
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.03 E-value=9.9e-05 Score=62.52 Aligned_cols=60 Identities=27% Similarity=0.411 Sum_probs=41.4
Q ss_pred CChHHHHHHHHhC--CCCcHHHHHHHHHHHHHH----HHhccCCCcceEEEeCCCHHHHHHHHHHhhc
Q 015825 254 PSMEELEERLRAR--GTETEDQILKRLRNAKEE----IKQGKSSGIFDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 254 P~lllLDEpl~~l--D~~~~e~i~~~L~~~~~~----l~~~~~~~~~t~Viv~hdleea~~~l~~ii~ 315 (399)
-+.+.+.+|+.++ ..++.+.+++++..++++ ++++ ...+..|-.+.+.+++++.+.+++.
T Consensus 115 ~~~e~l~~R~~~r~r~~~~~~~i~~rl~~y~~~~~~l~~~y--~~~~~~Id~~~s~eeV~~~I~~~l~ 180 (181)
T d2cdna1 115 VSEEVLLERLKGRGRADDTDDVILNRMKVYRDETAPLLEYY--RDQLKTVDAVGTMDEVFARALRALG 180 (181)
T ss_dssp CCHHHHHHHHHHHCCTTCSHHHHHHHHHHHHHHTTTHHHHT--TTTEEEEECCSCHHHHHHHHHHHTT
T ss_pred CCHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHH--hcCeEEEECCCCHHHHHHHHHHHhC
Confidence 3478899999855 466788999999988765 2222 2233344456699999998877653
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.95 E-value=1.5e-05 Score=67.01 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++||||||+.++|+..+
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999876
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.94 E-value=1.2e-05 Score=66.69 Aligned_cols=25 Identities=44% Similarity=0.658 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
++++|.||+||||||+++.|+..+.
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~ 27 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC
Confidence 6789999999999999999998764
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.92 E-value=1.6e-05 Score=65.16 Aligned_cols=24 Identities=25% Similarity=0.349 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++++|.||+||||||+++.|....
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~ 26 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN 26 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 678999999999999999886543
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.91 E-value=9.5e-07 Score=74.21 Aligned_cols=28 Identities=21% Similarity=0.504 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
..+++.|.|||||||||+.+.|+..++.
T Consensus 2 ~~kiI~l~G~~GsGKsTva~~L~~~l~~ 29 (178)
T d1qhxa_ 2 TTRMIILNGGSSAGKSGIVRCLQSVLPE 29 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 4689999999999999999999998753
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=97.86 E-value=0.00037 Score=58.87 Aligned_cols=66 Identities=20% Similarity=0.220 Sum_probs=41.4
Q ss_pred EEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHH----HhccCCCcceEEEeCCCHHHHHHHHHHhhcc
Q 015825 249 IFICPPSMEELEERLRARGTETEDQILKRLRNAKEEI----KQGKSSGIFDHILYNDKLEECYENLKKHLGL 316 (399)
Q Consensus 249 ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l----~~~~~~~~~t~Viv~hdleea~~~l~~ii~~ 316 (399)
.+..+.+.+.+.+|+...+ +++.+.+++..+.++. +++.....+..|-.+.+++++++.+.+++.-
T Consensus 110 ~~~l~~~~e~~~~R~~~~~--~~e~i~~R~~~y~~~~~~i~~~y~~~~~~~~Id~~~~~eeV~~~I~~il~~ 179 (182)
T d1s3ga1 110 VLNIQVEKEELIARLTADD--NPDTVTNRLEVNMNQTAPLLAFYDSKEVLVNINGQKDIKDVFKDLDVILQG 179 (182)
T ss_dssp EEEEECCHHHHHHHHHTTC--SHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEECSSCHHHHHHHHHHHHTC
T ss_pred ccchhhhhhhhhhhhhccc--hhHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHHh
Confidence 3333445677888876654 5678889988877652 2232222333333455899999999887653
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.86 E-value=0.00024 Score=59.73 Aligned_cols=65 Identities=20% Similarity=0.335 Sum_probs=40.9
Q ss_pred EEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHH----HhccCCCcceEEEeCCCHHHHHHHHHHhhc
Q 015825 249 IFICPPSMEELEERLRARGTETEDQILKRLRNAKEEI----KQGKSSGIFDHILYNDKLEECYENLKKHLG 315 (399)
Q Consensus 249 ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l----~~~~~~~~~t~Viv~hdleea~~~l~~ii~ 315 (399)
.+...++.+.+.+|+..++ +++.+++|++.+.++. ++++..+.+..|-.+.+++++++.+..++.
T Consensus 110 ~~~l~~~~e~~~~R~~~~~--~~e~~~~Rl~~y~~~~~~l~~~y~~~~~~~~Id~~~~~eeV~~~I~~~L~ 178 (182)
T d1zina1 110 VIHIDVRQDVLMERLTADD--NEATVANRLEVNMKQMKPLVDFYEQKGYLRNINGEQDMEKVFADIRELLG 178 (182)
T ss_dssp EEEEECCHHHHHHHHHTTC--SHHHHHHHHHHHHHHHTHHHHHHHHHTCEEEEECSSCHHHHHHHHHHHHH
T ss_pred eeccccccchhhhcccccc--chHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence 3333445788889998776 5678889988876652 222211222233345589999998877654
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=97.85 E-value=4.7e-06 Score=71.78 Aligned_cols=66 Identities=23% Similarity=0.286 Sum_probs=44.3
Q ss_pred eEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC-CHHHHHHHHHHhhcc
Q 015825 247 IFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKKHLGL 316 (399)
Q Consensus 247 ~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h-dleea~~~l~~ii~~ 316 (399)
..+++. .+.++.-+|+..|+..+.+++..++.. ++...+....||+||.|+ ++++....++.++..
T Consensus 122 ~vI~v~-a~~e~r~~Rl~~R~~~~~~~~~~~~~~---q~~~~~~~~~aD~vI~N~~s~~~l~~~v~~il~~ 188 (191)
T d1uf9a_ 122 GTLLVA-APLEERVRRVMARSGLSREEVLARERA---QMPEEEKRKRATWVLENTGSLEDLERALKAVLAE 188 (191)
T ss_dssp EEEEEC-CCHHHHHHHHHTTTCCTTHHHHHHHTT---SCCHHHHHHHCSEEECCSSHHHHHHHHHHHHHHS
T ss_pred eEEEEe-cchhhHHHHHHhcccchHHHHHHHHHh---CCCHHHHHHhCCEEEECCCCHHHHHHHHHHHHHH
Confidence 345554 447888999999988788888776543 111111123578998877 788888888887654
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.81 E-value=1.5e-05 Score=69.63 Aligned_cols=27 Identities=30% Similarity=0.445 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
+|++++|-|+.||||||+++.|...+.
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999987654
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.79 E-value=0.00041 Score=58.34 Aligned_cols=58 Identities=19% Similarity=0.202 Sum_probs=35.8
Q ss_pred ChHHHHHHHHhCCCCcHHHHHHHHHHHHHH----HHhccC-----CCcceEEEeCCCHHHHHHHHHHhh
Q 015825 255 SMEELEERLRARGTETEDQILKRLRNAKEE----IKQGKS-----SGIFDHILYNDKLEECYENLKKHL 314 (399)
Q Consensus 255 ~lllLDEpl~~lD~~~~e~i~~~L~~~~~~----l~~~~~-----~~~~t~Viv~hdleea~~~l~~ii 314 (399)
+..++-+|+..+| +.+.+++++..++++ ++.+.. ...+..|-.+.+++++.+.+.+++
T Consensus 112 ~~~~l~~R~~~~~--~~e~i~~r~~~y~~~~~~v~~~y~~~~~~~~~~~~~IDa~~~ieeV~~~I~~~l 178 (179)
T d1e4va1 112 PDELIVDRIVKDD--QEETVRKRLVEYHQMTAPLIGYYSKEAEAGNTKYAKVDGTKPVAEVRADLEKIL 178 (179)
T ss_dssp CHHHHHHHHHTTC--SHHHHHHHHHHHHHHTTHHHHHHHHHHHHTSCEEEEEETTSCHHHHHHHHHHHH
T ss_pred chhhhhhhhcccc--cHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcEEEEECCCCHHHHHHHHHHHh
Confidence 3577888998875 457788888876654 122110 111222333568999998887765
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=97.79 E-value=3.3e-06 Score=71.33 Aligned_cols=27 Identities=33% Similarity=0.546 Sum_probs=25.1
Q ss_pred EEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 136 VVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
++|+||||||||||++.|++.+++..|
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~~g 29 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEECCCCcHHHHHHHHHHhcCCCCcc
Confidence 789999999999999999999988766
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=97.78 E-value=0.0003 Score=60.33 Aligned_cols=87 Identities=13% Similarity=0.190 Sum_probs=47.9
Q ss_pred CceEEecchhhHH---HHHcCCcceeEEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHH----HHhccCCCcceEE
Q 015825 225 KRCILDIDVQGAR---SVRASPLDAIFIFICPPSMEELEERLRARGTETEDQILKRLRNAKEE----IKQGKSSGIFDHI 297 (399)
Q Consensus 225 ~~~vldld~~g~~---~l~~~~~~~~~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~----l~~~~~~~~~t~V 297 (399)
...++|..|.... .+... ..+-.++..+.+...+.+|+..+ .+.+.+++..+.++ +++|+..+. -+.
T Consensus 84 ~~~ildGfPr~~~q~~~l~~~-~~~~~vi~L~v~~~~l~~R~~~r----~e~~~kr~~~y~~~~~~v~~~Y~~~~~-l~~ 157 (189)
T d2ak3a1 84 YNWLLDGFPRTLPQAEALDRA-YQIDTVINLNVPFEVIKQRLTDR----PETVVKRLKAYEAQTEPVLEYYRKKGV-LET 157 (189)
T ss_dssp SCEEEESCCCSHHHHHHHHTT-CCCCEEEEEECCHHHHHHHHTGS----HHHHHHHHHHHHHHHHHHHHHHHHHTC-EEE
T ss_pred cCcccccccchhhHHHHhhhc-CcceEEEEEeccchhhhhhcccc----hHHHHHHHHHHHHHHHHHHHHHHhcCC-EEE
Confidence 4466775443333 23322 22223333344578888887544 56788888877665 223321222 122
Q ss_pred EeCCCHHHHHHHHHHhhccc
Q 015825 298 LYNDKLEECYENLKKHLGLD 317 (399)
Q Consensus 298 iv~hdleea~~~l~~ii~~~ 317 (399)
+...+.+++++.+..++...
T Consensus 158 idg~~~~eV~~~I~~~i~~~ 177 (189)
T d2ak3a1 158 FSGTETNKIWPHVYAFLQTK 177 (189)
T ss_dssp EECSSHHHHHHHHHHHHHTT
T ss_pred ECCCChHHHHHHHHHHHHHH
Confidence 44447889998888877543
|
| >d1u0la1 b.40.4.5 (A:3-68) Probable GTPase EngC (YjeQ), N-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Probable GTPase EngC (YjeQ), N-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.76 E-value=1e-05 Score=57.96 Aligned_cols=28 Identities=11% Similarity=0.189 Sum_probs=24.1
Q ss_pred CCCCceeccEEEEEe-cCCeeEEEEeeeC
Q 015825 29 CETTTVIGDKTYVIA-GSDESIGVKIYDR 56 (399)
Q Consensus 29 ~~~~~~vGD~v~~~~-~~~~~~i~~i~~r 56 (399)
.+..|+|||+|.|+. ++++|+|++|+||
T Consensus 37 ~~~~~~VGD~V~~~~~~~~~g~I~~I~pR 65 (66)
T d1u0la1 37 QNLKIYVGDRVEYTPDETGSGVIENVLHR 65 (66)
T ss_dssp TTCCCCTTCEEEEECCCSSSEEEEEECCC
T ss_pred cCCccccCCEEEEEECCCCeEEEEEEcCC
Confidence 356799999999987 4558999999999
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.75 E-value=0.0001 Score=64.51 Aligned_cols=27 Identities=22% Similarity=0.267 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
+|.+++|-|+.||||||+++.|...+.
T Consensus 2 rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 2 RGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999988654
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=97.74 E-value=3.4e-05 Score=65.03 Aligned_cols=24 Identities=25% Similarity=0.522 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++++|+|++||||||+.+.|+..+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 568899999999999999998765
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.72 E-value=4e-05 Score=63.93 Aligned_cols=28 Identities=29% Similarity=0.501 Sum_probs=24.6
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.++-.++|+||+||||||+.+.|+..+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 3567799999999999999999998764
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.72 E-value=0.00019 Score=59.90 Aligned_cols=26 Identities=38% Similarity=0.548 Sum_probs=23.3
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
+++++|.||+||||||+++.|...+.
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 47999999999999999999987654
|
| >d1t9ha1 b.40.4.5 (A:1-67) Probable GTPase EngC (YjeQ), N-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: OB-fold superfamily: Nucleic acid-binding proteins family: Cold shock DNA-binding domain-like domain: Probable GTPase EngC (YjeQ), N-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.72 E-value=1.2e-05 Score=57.72 Aligned_cols=27 Identities=26% Similarity=0.347 Sum_probs=24.0
Q ss_pred CCCceeccEEEEEe-cCCeeEEEEeeeC
Q 015825 30 ETTTVIGDKTYVIA-GSDESIGVKIYDR 56 (399)
Q Consensus 30 ~~~~~vGD~v~~~~-~~~~~~i~~i~~r 56 (399)
+.+|+|||+|.|+. ++++|+|++|+||
T Consensus 39 ~~~p~VGD~V~~~~~~~~~g~I~~I~pR 66 (67)
T d1t9ha1 39 KITPLVGDYVVYQAENDKEGYLMEIKER 66 (67)
T ss_dssp CCCCCBTCEEEEECCTTSCEEEEEECCC
T ss_pred CCccCcCcEEEEEEccCCeEEEEEEecC
Confidence 66799999999997 4558999999999
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.69 E-value=4.3e-05 Score=64.96 Aligned_cols=30 Identities=33% Similarity=0.253 Sum_probs=26.2
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 129 IGNVEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+++|.++.|+|++||||||+.+.|+..+.
T Consensus 15 ~~~~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 15 GGFRGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CSCCCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 356899999999999999999999987653
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.65 E-value=3.2e-05 Score=64.71 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=23.4
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
-+.++|.||+|||||||++.|+..+.
T Consensus 7 ~K~I~i~G~~GsGKTTla~~La~~~~ 32 (192)
T d1lw7a2 7 AKTVAILGGESSGKSVLVNKLAAVFN 32 (192)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 47899999999999999999998764
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=97.64 E-value=2.2e-05 Score=68.53 Aligned_cols=62 Identities=18% Similarity=0.247 Sum_probs=36.4
Q ss_pred EEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC-CHHHHHHHHHHh
Q 015825 248 FIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKKH 313 (399)
Q Consensus 248 ~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h-dleea~~~l~~i 313 (399)
.+++.. +.++.-+|+..|+..+.+.+.+++..- +...+....+|+||.|+ ++++....+.+.
T Consensus 127 ii~v~~-~~~~r~~R~~~R~~~s~e~~~~~~~~Q---~~~~~k~~~aD~vI~N~~~l~~~~~~l~~~ 189 (205)
T d1jjva_ 127 ILVVDV-SPQTQLARSAQRDNNNFEQIQRIMNSQ---VSQQERLKWADDVINNDAELAQNLPHLQQK 189 (205)
T ss_dssp EEEEEC-CHHHHHHHHC-----CHHHHHHHHHHS---CCHHHHHHHCSEEEECCSCHHHHHHHHHHH
T ss_pred eeeecc-hHHHHHHHHHhcCCchHHHHHHHHHhC---CCHHHHHHhCCEEEECCCChHHHHHHHHHH
Confidence 344443 368888999999888889998887742 11111123579999887 777766666543
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.60 E-value=5e-05 Score=63.06 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+||+||||||+.+.|+..+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999998765
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=97.59 E-value=2.6e-05 Score=68.25 Aligned_cols=63 Identities=11% Similarity=0.135 Sum_probs=41.1
Q ss_pred EEEEcCCChHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHhccCCCcceEEEeCC-CHHHHHHHHHHhh
Q 015825 248 FIFICPPSMEELEERLRARGTETEDQILKRLRNAKEEIKQGKSSGIFDHILYND-KLEECYENLKKHL 314 (399)
Q Consensus 248 ~ili~~P~lllLDEpl~~lD~~~~e~i~~~L~~~~~~l~~~~~~~~~t~Viv~h-dleea~~~l~~ii 314 (399)
.+++..| .++.-+|+..|+..+++.+++++..- +...+....+|+||.|+ ++++....+++++
T Consensus 128 iI~V~a~-~e~r~~R~~~R~~~~~~~~~~~~~~Q---~~~~~k~~~aD~vI~N~~~le~l~~~v~~l~ 191 (208)
T d1vhta_ 128 VLVVDVS-PETQLKRTMQRDDVTREHVEQILAAQ---ATREARLAVADDVIDNNGAPDAIASDVARLH 191 (208)
T ss_dssp EEEEECC-HHHHHHHHHHHHTCCHHHHHHHHHHS---CCHHHHHHHCSEEEECSSCTTSHHHHHHHHH
T ss_pred EEEEeCC-HHHHHHHHHHhhhhhHHHHHHHHHhC---CCHHHHHHhCCEEEECCCCHHHHHHHHHHHH
Confidence 3444433 57888899999888888888887652 11111123569999888 6776666665543
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.56 E-value=0.00014 Score=60.81 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=19.8
Q ss_pred EEEEcCCCCCHHHHHhhhhhcc
Q 015825 136 VVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++|+|++||||||+.+.|+..+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999998865
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.48 E-value=0.0012 Score=55.48 Aligned_cols=23 Identities=43% Similarity=0.781 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+||.||||||+.+.|+..+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47789999999999999999865
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.31 E-value=5.2e-05 Score=61.95 Aligned_cols=24 Identities=29% Similarity=0.634 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+.++|+||+||||||+.+.|+..+
T Consensus 3 k~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 3 RNIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999876
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.22 E-value=6.2e-05 Score=62.36 Aligned_cols=24 Identities=29% Similarity=0.376 Sum_probs=21.6
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccC
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
+++|+|++|||||||++.|+..+.
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999987653
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.21 E-value=6.7e-05 Score=62.41 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=25.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+|.++.|+|+|||||||+.+.|+..+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4788999999999999999999998764
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=97.08 E-value=0.00049 Score=62.51 Aligned_cols=94 Identities=17% Similarity=0.147 Sum_probs=52.0
Q ss_pred CCceEEEEeCCCh---HHHHHHH---HHhCCeEEEeccCc-cC-------------------------CCCcEEEEEcCC
Q 015825 95 SSDDCLWFLEVDT---PYVREQK---KVVGAEVVAWSKGV-IG-------------------------NVEKPVVITGPS 142 (399)
Q Consensus 95 ~~~~~i~~~k~D~---~~~~~l~---~~~g~~v~~~s~~~-~~-------------------------~~g~~~~l~Gps 142 (399)
+=+.+|++||+|. +..+.+. +..+...+.++... .+ ..+-.++++|-+
T Consensus 42 ~Kp~IlVlNK~DLv~~~~~~~w~~~f~~~~~~~i~isa~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~vvG~P 121 (273)
T d1puja_ 42 NKPRIMLLNKADKADAAVTQQWKEHFENQGIRSLSINSVNGQGLNQIVPASKEILQEKFDRMRAKGVKPRAIRALIIGIP 121 (273)
T ss_dssp SSCEEEEEECGGGSCHHHHHHHHHHHHTTTCCEEECCTTTCTTGGGHHHHHHHHHHHHHHHHHHTTCCCCCEEEEEEEST
T ss_pred CCCeEEEEECccCCchHHHHHHHHHHHhcCCccceeecccCCCccccchhhhhhhhhhhhhhhhccCCCCceEEEEEecC
Confidence 4467888999993 2222222 34456677766541 10 134458999999
Q ss_pred CCCHHHHHhhhhhccCCcccceeeecCCCccccccCCeeEEecChHH
Q 015825 143 GVGKGTLISMLMKEFPSMFGFSVSHTTRAPRAMEKDGVHYHFTERSV 189 (399)
Q Consensus 143 G~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~~~~~~~i~yvfq~~~l 189 (399)
-+|||||+|.|.+......| ..+.+|+..+.......-+++..+..
T Consensus 122 NvGKSsliN~L~~~~~~~~~-~~pG~Tr~~~~i~~~~~~~l~DTPGi 167 (273)
T d1puja_ 122 NVGKSTLINRLAKKNIAKTG-DRPGITTSQQWVKVGKELELLDTPGI 167 (273)
T ss_dssp TSSHHHHHHHHHTSCCC-------------CCEEETTTEEEEECCCC
T ss_pred ccchhhhhhhhhccceEEEC-CcccccccceEEECCCCeEEecCCCc
Confidence 99999999999998777777 66677776654433322355555544
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.97 E-value=0.00015 Score=60.53 Aligned_cols=26 Identities=19% Similarity=0.155 Sum_probs=22.9
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
++++++|++|||||||++.|+..+..
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 58899999999999999999887653
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.88 E-value=0.00017 Score=61.02 Aligned_cols=25 Identities=32% Similarity=0.302 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
-+++|.||+|||||||++.|...+.
T Consensus 23 ~iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 23 LVLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3678999999999999999987654
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.85 E-value=0.0038 Score=54.23 Aligned_cols=28 Identities=29% Similarity=0.394 Sum_probs=25.3
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
+|++++|-|+.||||||++++|...+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 6999999999999999999999887653
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.82 E-value=0.00021 Score=59.37 Aligned_cols=26 Identities=46% Similarity=0.678 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
|.+.|+||+|+|||||++.++..+..
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~ 27 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKS 27 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 56899999999999999999987654
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.78 E-value=0.00028 Score=58.89 Aligned_cols=24 Identities=42% Similarity=0.591 Sum_probs=20.0
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccC
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
+++|+|++|||||||++.|++...
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~~ 25 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKKK 25 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC---
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999999999999999998653
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=96.76 E-value=0.00024 Score=59.59 Aligned_cols=25 Identities=32% Similarity=0.502 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
++++|.|++||||||+++.|+..+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5789999999999999999998764
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=96.76 E-value=0.00042 Score=58.14 Aligned_cols=23 Identities=39% Similarity=0.535 Sum_probs=20.8
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||+|.|.+..
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~~ 24 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGKK 24 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999853
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.58 E-value=0.00048 Score=59.63 Aligned_cols=25 Identities=12% Similarity=0.274 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
-+++|.||+||||||+.+.|...+.
T Consensus 3 ~iIgI~G~~gSGKSTla~~L~~~l~ 27 (213)
T d1uj2a_ 3 FLIGVSGGTASGKSSVCAKIVQLLG 27 (213)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4789999999999999999987764
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.45 E-value=0.00088 Score=56.18 Aligned_cols=23 Identities=39% Similarity=0.473 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+++|+|.+|||||||+|.|.+..
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 69999999999999999999864
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.42 E-value=0.0032 Score=53.68 Aligned_cols=24 Identities=38% Similarity=0.578 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccC
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
+++|-|+-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999987654
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.41 E-value=0.00085 Score=57.05 Aligned_cols=28 Identities=29% Similarity=0.285 Sum_probs=24.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
-++-+++|-|+.||||||+++.|...+.
T Consensus 7 ~kp~~I~ieG~~GsGKTTl~~~L~~~l~ 34 (197)
T d2vp4a1 7 TQPFTVLIEGNIGSGKTTYLNHFEKYKN 34 (197)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGGTT
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3566899999999999999999998764
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.40 E-value=0.00092 Score=56.34 Aligned_cols=26 Identities=31% Similarity=0.360 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
....+++++|++||||||+++.|...
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~ 37 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS 37 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 46789999999999999999988653
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.38 E-value=0.00088 Score=54.85 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=21.8
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
=.++|+|+++||||||++.|.+...
T Consensus 2 ~kI~lvG~~nvGKSsLin~l~~~~~ 26 (161)
T d2gj8a1 2 MKVVIAGRPNAGKSSLLNALAGREA 26 (161)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3579999999999999999998643
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=96.37 E-value=0.00073 Score=54.80 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.|.+..
T Consensus 2 kivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 36899999999999999998754
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.31 E-value=0.00092 Score=59.35 Aligned_cols=28 Identities=25% Similarity=0.429 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
..++.+.|.||+|||||||++.|++.+.
T Consensus 30 ~~P~~ilL~GpPGtGKT~la~~la~~~~ 57 (273)
T d1gvnb_ 30 ESPTAFLLGGQPGSGKTSLRSAIFEETQ 57 (273)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3567789999999999999999999764
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=96.29 E-value=0.00078 Score=57.32 Aligned_cols=23 Identities=30% Similarity=0.572 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||+|.|.|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 59999999999999999999853
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.27 E-value=0.00089 Score=54.16 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.|.+..
T Consensus 2 KI~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 36899999999999999999854
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.25 E-value=0.0011 Score=58.01 Aligned_cols=27 Identities=26% Similarity=0.367 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
+.+.++|-|+.||||||+++.|...+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 468999999999999999999999875
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.25 E-value=0.00098 Score=55.49 Aligned_cols=22 Identities=36% Similarity=0.602 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
+++|+|.++||||||+|+|.+.
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999975
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.23 E-value=0.0017 Score=58.31 Aligned_cols=26 Identities=23% Similarity=0.470 Sum_probs=22.7
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
-.++|+|.+|+|||||+|.|.|....
T Consensus 33 l~I~LvG~tg~GKSSliN~ilg~~~~ 58 (257)
T d1h65a_ 33 LTILVMGKGGVGKSSTVNSIIGERVV 58 (257)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCS
T ss_pred cEEEEECCCCCcHHHHHHHHhCCCce
Confidence 46899999999999999999987543
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.22 E-value=0.00092 Score=60.79 Aligned_cols=24 Identities=29% Similarity=0.592 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhh
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMK 155 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~ 155 (399)
...+.+|+|||||||||++.+|.-
T Consensus 23 ~~~lnvlvG~NgsGKS~iL~Ai~~ 46 (308)
T d1e69a_ 23 SDRVTAIVGPNGSGKSNIIDAIKW 46 (308)
T ss_dssp CSSEEEEECCTTTCSTHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHH
Confidence 345899999999999999998854
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.20 E-value=0.00084 Score=56.54 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=20.3
Q ss_pred EEEEcCCCCCHHHHHhhhhhcc
Q 015825 136 VVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++|+|+++||||||+|.|.+..
T Consensus 4 VaiiG~~nvGKSSLin~L~~~~ 25 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSAK 25 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEEC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999998864
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=96.18 E-value=0.0011 Score=57.95 Aligned_cols=23 Identities=35% Similarity=0.466 Sum_probs=20.7
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+++|+||.|||||||++.|....
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 68999999999999999998654
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.18 E-value=0.001 Score=55.93 Aligned_cols=25 Identities=32% Similarity=0.473 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
=.++|+|.+|+|||||+|+|.+...
T Consensus 9 ~kV~iiG~~~~GKSTLin~l~~~~~ 33 (186)
T d1mkya2 9 IKVAIVGRPNVGKSTLFNAILNKER 33 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTT
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCc
Confidence 3589999999999999999998543
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=96.16 E-value=0.0011 Score=54.06 Aligned_cols=23 Identities=30% Similarity=0.407 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|.+|||||||++.+.+..
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~~ 29 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVGE 29 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998754
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.16 E-value=0.0011 Score=56.47 Aligned_cols=23 Identities=30% Similarity=0.720 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||+|.|.+..
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~~ 27 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTDS 27 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998753
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.13 E-value=0.00084 Score=55.71 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++|+|++|||||||++.|.+..
T Consensus 14 ~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 14 GKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999999998764
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.12 E-value=0.0011 Score=57.00 Aligned_cols=24 Identities=42% Similarity=0.760 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccC
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
+++|.||+||||||+.+.|+..+.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 788899999999999999998764
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.12 E-value=0.0011 Score=56.55 Aligned_cols=25 Identities=20% Similarity=0.282 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
-+++++|.+||||||+++.|+..+.
T Consensus 3 ~li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 3 TLIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3689999999999999999997653
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.10 E-value=0.0011 Score=57.38 Aligned_cols=24 Identities=33% Similarity=0.714 Sum_probs=21.3
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccC
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
+++|.||+||||||+.+.|+..+.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 567889999999999999998764
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.06 E-value=0.00046 Score=56.60 Aligned_cols=23 Identities=43% Similarity=0.634 Sum_probs=20.9
Q ss_pred EEEEcCCCCCHHHHHhhhhhccC
Q 015825 136 VVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
++|+|.++||||||+|.|.|...
T Consensus 3 I~liG~~n~GKSSLin~l~g~~~ 25 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNEDR 25 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHHTB
T ss_pred EEEECCCCCCHHHHHHHHhCCCc
Confidence 79999999999999999998653
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.89 E-value=0.002 Score=56.10 Aligned_cols=27 Identities=33% Similarity=0.512 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
+++++.|+||+||||||++-.|+..+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999888876543
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=95.83 E-value=0.0015 Score=54.35 Aligned_cols=26 Identities=23% Similarity=0.339 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..-.++|+|.++||||||+|+|.+..
T Consensus 15 ~~~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 15 TGIEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCCC-
T ss_pred cCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34569999999999999999998864
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=95.82 E-value=0.0024 Score=52.40 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++|+|++|||||||++.|.+..
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 47899999999999999998754
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=95.81 E-value=0.0014 Score=55.00 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=20.3
Q ss_pred EEEEcCCCCCHHHHHhhhhhcc
Q 015825 136 VVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++|+|.++||||||+|.|.+..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999998864
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.81 E-value=0.0021 Score=55.02 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
|.++|+|++|||||||++.|.+..
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~~~ 24 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLTGQ 24 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 468999999999999999998753
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.76 E-value=0.002 Score=56.03 Aligned_cols=27 Identities=30% Similarity=0.334 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+|.++-|.|.|||||||+.+.|...+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l 48 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQL 48 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999998654
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.74 E-value=0.0024 Score=56.17 Aligned_cols=27 Identities=30% Similarity=0.591 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
....+.|.||+|+||||++++|+....
T Consensus 51 ~~~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 51 VFRAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 345799999999999999999998764
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.61 E-value=0.0026 Score=58.57 Aligned_cols=27 Identities=33% Similarity=0.538 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
+++-+.|+||+|||||+|+++|+....
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~ 74 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLAN 74 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCceEEEECCCCCCHHHHHHHHhhccc
Confidence 456788999999999999999998753
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.61 E-value=0.00053 Score=57.46 Aligned_cols=25 Identities=24% Similarity=0.489 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..+.+|+|||||||||++.+|.-.+
T Consensus 24 ~~~tvi~G~NGsGKStil~Ai~~~L 48 (222)
T d1qhla_ 24 ELVTTLSGGNGAGKSTTMAAFVTAL 48 (222)
T ss_dssp HHHHHHHSCCSHHHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3588999999999999999997543
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=95.50 E-value=0.0024 Score=58.92 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=23.4
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
..-+++|.|+|||||||+.+.|...+.
T Consensus 79 ~P~iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 79 IPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEEeCCCCCCCcHHHHHHHHHHh
Confidence 346899999999999999999988764
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=95.49 E-value=0.0027 Score=55.49 Aligned_cols=27 Identities=33% Similarity=0.681 Sum_probs=23.0
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccCCcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFPSMF 161 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~~~~ 161 (399)
.+.|.||+|+||||+++.|+..+...+
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~~ 63 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTNI 63 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred eEEEECCCCCcHHHHHHHHHhccCCCc
Confidence 578999999999999999998765433
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=95.47 E-value=0.0031 Score=51.87 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
-++|+|++|||||||++.|.+.
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~~ 25 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIASG 25 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999764
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=95.47 E-value=0.0048 Score=53.72 Aligned_cols=27 Identities=33% Similarity=0.552 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
...+++|+||+||||||++-.|+..+.
T Consensus 8 ~p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 8 APFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp TTEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999988876543
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=95.44 E-value=0.0035 Score=54.44 Aligned_cols=27 Identities=22% Similarity=0.226 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+.++.|+||+|+||||++-.|+..+.
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457889999999999999988886553
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=95.44 E-value=0.0035 Score=54.69 Aligned_cols=27 Identities=30% Similarity=0.397 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+..+++|+||+||||||++-.|+..+
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 356789999999999999988887654
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=95.43 E-value=0.003 Score=52.13 Aligned_cols=24 Identities=25% Similarity=0.361 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++|+|.+|||||||++.|.+..
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999998754
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.38 E-value=0.0035 Score=51.93 Aligned_cols=21 Identities=43% Similarity=0.749 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHhhhhhc
Q 015825 136 VVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~ 156 (399)
++++|++|||||||++.+.+.
T Consensus 5 i~~vG~~~vGKSsLi~~~~~~ 25 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVND 25 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 789999999999999998764
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=95.35 E-value=0.003 Score=54.95 Aligned_cols=23 Identities=39% Similarity=0.677 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+.|.||+|+||||++++|+..+
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 58899999999999999998865
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=95.35 E-value=0.0035 Score=54.82 Aligned_cols=25 Identities=32% Similarity=0.664 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
..+.|.||+|+||||+++++++...
T Consensus 36 ~~~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 36 EHLLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 4578999999999999999998764
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.34 E-value=0.0039 Score=58.65 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=20.5
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhh
Q 015825 132 VEKPVVITGPSGVGKGTLISMLM 154 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~ 154 (399)
.+.+.+|+|||||||||++.+|.
T Consensus 24 ~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 24 ESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp TCSEEEEECSTTSSHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHH
Confidence 35689999999999999999984
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.31 E-value=0.0037 Score=51.68 Aligned_cols=21 Identities=29% Similarity=0.525 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHhhhhhc
Q 015825 136 VVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~ 156 (399)
++++|.+|||||||++.+.+.
T Consensus 8 i~vvG~~~vGKTsLi~~l~~~ 28 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYADD 28 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHcC
Confidence 799999999999999998764
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.27 E-value=0.0042 Score=57.67 Aligned_cols=30 Identities=33% Similarity=0.522 Sum_probs=26.2
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCCcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPSMF 161 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~ 161 (399)
.++.+.++||.||||||++++|++..++..
T Consensus 165 ~~~nili~G~tgSGKTT~l~al~~~i~~~~ 194 (323)
T d1g6oa_ 165 IGKNVIVCGGTGSGKTTYIKSIMEFIPKEE 194 (323)
T ss_dssp HTCCEEEEESTTSSHHHHHHHHGGGSCTTC
T ss_pred hCCCEEEEeeccccchHHHHHHhhhccccc
Confidence 456789999999999999999999987743
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=95.23 E-value=0.0034 Score=58.42 Aligned_cols=27 Identities=22% Similarity=0.289 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
+.-+++|+||+|||||||++.|...+.
T Consensus 53 ~~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 53 NTLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp CSEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 356799999999999999999986654
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.22 E-value=0.0051 Score=51.57 Aligned_cols=27 Identities=15% Similarity=0.108 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+|+++.|.||+|+||||++..++...
T Consensus 21 ~~G~v~~i~G~~GsGKT~l~l~la~~~ 47 (242)
T d1n0wa_ 21 ETGSITEMFGEFRTGKTQICHTLAVTC 47 (242)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred cCCEEEEEEeCCCCCHHHHHHHHHHHH
Confidence 489999999999999999998887643
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.21 E-value=0.0042 Score=51.00 Aligned_cols=21 Identities=33% Similarity=0.581 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHhhhhhc
Q 015825 136 VVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~ 156 (399)
++|+|++|||||||++.+...
T Consensus 5 v~liG~~~vGKSsLi~rl~~~ 25 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCKG 25 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988753
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.19 E-value=0.004 Score=51.26 Aligned_cols=22 Identities=36% Similarity=0.687 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.++++|.+|||||||++.+.+.
T Consensus 5 Ki~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3799999999999999999865
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=95.17 E-value=0.0037 Score=51.72 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
-.++++|++|||||||++.|.+.
T Consensus 17 ~kI~vvG~~~vGKSsLi~~l~~~ 39 (176)
T d1fzqa_ 17 VRILLLGLDNAGKTTLLKQLASE 39 (176)
T ss_dssp EEEEEEESTTSSHHHHHHHHCCS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45899999999999999999764
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=95.14 E-value=0.007 Score=52.99 Aligned_cols=28 Identities=18% Similarity=0.277 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
....+.|.||+|+||||+++.|+..+..
T Consensus 42 ~~~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 42 HYPRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHhc
Confidence 3468899999999999999999987654
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=95.14 E-value=0.0023 Score=58.47 Aligned_cols=25 Identities=28% Similarity=0.438 Sum_probs=19.1
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
-++++.|+|||||||+.+.|...+.
T Consensus 5 pIIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 5 PIISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHh
Confidence 3899999999999999999887654
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=95.12 E-value=0.0042 Score=54.09 Aligned_cols=26 Identities=23% Similarity=0.385 Sum_probs=18.0
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
...++.|+||+||||||++-.|+..+
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~ 36 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFY 36 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 45778999999999999988887654
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=95.09 E-value=0.005 Score=53.99 Aligned_cols=27 Identities=19% Similarity=0.325 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+++++|.||+|+|||||++.++....
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~~ 54 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINELN 54 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHCC
Confidence 357889999999999999999876553
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.08 E-value=0.0048 Score=51.28 Aligned_cols=21 Identities=48% Similarity=0.795 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHhhhhhc
Q 015825 136 VVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~ 156 (399)
++++|++|||||||++.+.+.
T Consensus 7 i~vvG~~~vGKTsLi~~~~~~ 27 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTRN 27 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998764
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.05 E-value=0.0042 Score=53.91 Aligned_cols=22 Identities=41% Similarity=0.697 Sum_probs=20.2
Q ss_pred EEEEcCCCCCHHHHHhhhhhcc
Q 015825 136 VVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+.|.||+|+||||+++.++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999998864
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.04 E-value=0.0047 Score=50.81 Aligned_cols=23 Identities=26% Similarity=0.456 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.-++|+|++|||||||++.+...
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~ 27 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEG 27 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCcCHHHHHHHHHhC
Confidence 45889999999999999998753
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.02 E-value=0.0053 Score=50.48 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
-++|+|.+|||||||++.+.+.
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4799999999999999999865
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.01 E-value=0.0054 Score=50.56 Aligned_cols=21 Identities=38% Similarity=0.678 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHhhhhhc
Q 015825 136 VVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~ 156 (399)
++++|.+|||||||++.+.+.
T Consensus 5 i~viG~~~vGKTsLi~r~~~~ 25 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVKG 25 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHTC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999998764
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.00 E-value=0.0052 Score=50.93 Aligned_cols=21 Identities=33% Similarity=0.624 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHhhhhhc
Q 015825 136 VVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~ 156 (399)
++++|++|||||||++.+...
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 689999999999999998764
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.94 E-value=0.0068 Score=57.80 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
--++++|.+|+|||||+|.|.|..
T Consensus 57 l~Iai~G~~n~GKSSLiNaL~G~~ 80 (400)
T d1tq4a_ 57 LNVAVTGETGSGKSSFINTLRGIG 80 (400)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999854
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.89 E-value=0.0054 Score=50.68 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
-++|+|.+|||||||++.+...
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~~ 28 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQG 28 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999999864
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.88 E-value=0.0058 Score=51.15 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHhhhhhc
Q 015825 136 VVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~ 156 (399)
++|+|++|||||||++.+...
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~ 28 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDN 28 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 789999999999999999864
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.87 E-value=0.006 Score=50.12 Aligned_cols=21 Identities=33% Similarity=0.619 Sum_probs=19.1
Q ss_pred EEEEcCCCCCHHHHHhhhhhc
Q 015825 136 VVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~ 156 (399)
++|+|.+|+|||||++.+.+.
T Consensus 7 ivlvG~~~vGKTsli~~~~~~ 27 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTEK 27 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998764
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.86 E-value=0.0062 Score=50.24 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.4
Q ss_pred EEEEcCCCCCHHHHHhhhhhcc
Q 015825 136 VVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++|+|.+|||||||++.+.+..
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEECCCCcCHHHHHHHHhCCc
Confidence 6899999999999999998754
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.85 E-value=0.0077 Score=49.84 Aligned_cols=21 Identities=33% Similarity=0.703 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHhhhhhc
Q 015825 136 VVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~ 156 (399)
++|+|.+|||||||++.+...
T Consensus 9 I~vvG~~~vGKSSli~~~~~~ 29 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVTN 29 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.78 E-value=0.006 Score=50.06 Aligned_cols=22 Identities=32% Similarity=0.655 Sum_probs=19.6
Q ss_pred EEEEcCCCCCHHHHHhhhhhcc
Q 015825 136 VVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++++|.+|||||||++.++...
T Consensus 5 i~vvG~~~vGKTSli~~l~~~~ 26 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVEDK 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECCCCcCHHHHHHHHHhCC
Confidence 7899999999999999987653
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.78 E-value=0.0061 Score=50.34 Aligned_cols=22 Identities=32% Similarity=0.613 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
-++|+|.+|||||||++.+...
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~ 28 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQS 28 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998764
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.72 E-value=0.0058 Score=52.91 Aligned_cols=22 Identities=36% Similarity=0.683 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHhhhhhcc
Q 015825 136 VVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+.|.||+|+||||+++.|+..+
T Consensus 39 ~ll~Gp~G~GKTt~a~~la~~l 60 (224)
T d1sxjb2 39 MIISGMPGIGKTTSVHCLAHEL 60 (224)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCchhhHHHHHHHH
Confidence 7899999999999999998765
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=94.71 E-value=0.0076 Score=53.93 Aligned_cols=27 Identities=33% Similarity=0.554 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
..+-+.|.||+|||||++++.|+....
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 346788999999999999999998664
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=94.67 E-value=0.0051 Score=51.31 Aligned_cols=23 Identities=30% Similarity=0.427 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
--++++|++|||||||++.|.+.
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35889999999999999998754
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.66 E-value=0.0074 Score=49.28 Aligned_cols=21 Identities=29% Similarity=0.453 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHhhhhhc
Q 015825 136 VVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~ 156 (399)
++++|.+|||||||++.+...
T Consensus 5 v~liG~~~vGKTsLl~~~~~~ 25 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCAG 25 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999999754
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.66 E-value=0.0074 Score=49.76 Aligned_cols=21 Identities=33% Similarity=0.664 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHhhhhhc
Q 015825 136 VVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~ 156 (399)
++++|++|||||||++.+...
T Consensus 5 i~lvG~~~vGKTsli~r~~~~ 25 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLTK 25 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999864
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.64 E-value=0.0073 Score=50.50 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
-++|+|.+|||||||++.+...
T Consensus 7 KivviG~~~vGKTsli~~~~~~ 28 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTTN 28 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4899999999999999998764
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.63 E-value=0.0076 Score=49.50 Aligned_cols=22 Identities=27% Similarity=0.625 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
-++|+|.+|||||||++.+...
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~~ 27 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVED 27 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999999754
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.62 E-value=0.0076 Score=50.38 Aligned_cols=21 Identities=43% Similarity=0.754 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHhhhhhc
Q 015825 136 VVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~ 156 (399)
++++|.+|||||||++.+.+.
T Consensus 5 v~vvG~~~vGKSSLi~~l~~~ 25 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVNK 25 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998764
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=94.62 E-value=0.0067 Score=56.20 Aligned_cols=25 Identities=44% Similarity=0.452 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..+++|.||.|||||||+..|...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999998653
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.52 E-value=0.0076 Score=49.22 Aligned_cols=21 Identities=38% Similarity=0.634 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHhhhhhc
Q 015825 136 VVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~ 156 (399)
++++|.+|||||||++.+.+.
T Consensus 3 v~vvG~~~vGKTsLi~r~~~~ 23 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMYD 23 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999999864
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.50 E-value=0.0087 Score=49.15 Aligned_cols=22 Identities=32% Similarity=0.460 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
-++|+|.+|||||||++.+.+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~~~ 26 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCEN 26 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3689999999999999998764
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.48 E-value=0.0078 Score=49.96 Aligned_cols=22 Identities=32% Similarity=0.481 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
-++++|.+|||||||++.+...
T Consensus 4 KivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4689999999999999998765
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=94.44 E-value=0.0066 Score=50.23 Aligned_cols=24 Identities=21% Similarity=0.277 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.++++|++|||||||++.+....
T Consensus 13 ~kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 13 MRILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999997644
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.43 E-value=0.01 Score=49.17 Aligned_cols=22 Identities=41% Similarity=0.649 Sum_probs=19.9
Q ss_pred EEEEcCCCCCHHHHHhhhhhcc
Q 015825 136 VVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++|+|.+|||||||++.+.+..
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCc
Confidence 7899999999999999998754
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.42 E-value=0.0091 Score=54.31 Aligned_cols=25 Identities=20% Similarity=0.364 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.-+++|.|++|||||||.+.|...+
T Consensus 27 P~iIGi~G~qGSGKSTl~~~l~~~L 51 (286)
T d1odfa_ 27 PLFIFFSGPQGSGKSFTSIQIYNHL 51 (286)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEeECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999998886554
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.40 E-value=0.0076 Score=49.86 Aligned_cols=21 Identities=29% Similarity=0.569 Sum_probs=17.9
Q ss_pred EEEEcCCCCCHHHHHhhhhhc
Q 015825 136 VVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~ 156 (399)
++++|++|||||||++.+...
T Consensus 6 i~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC--
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998764
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.39 E-value=0.009 Score=49.60 Aligned_cols=21 Identities=38% Similarity=0.729 Sum_probs=19.3
Q ss_pred EEEEcCCCCCHHHHHhhhhhc
Q 015825 136 VVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~ 156 (399)
++++|.+|||||||++.|.+.
T Consensus 10 i~vvG~~~vGKTsli~~l~~~ 30 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTDD 30 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999998864
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.36 E-value=0.0094 Score=51.87 Aligned_cols=27 Identities=33% Similarity=0.666 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
.++++|=|+-||||||+++.|...+..
T Consensus 2 pk~IviEG~~GsGKST~~~~L~~~l~~ 28 (241)
T d2ocpa1 2 PRRLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHhh
Confidence 478999999999999999999987653
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.36 E-value=0.0085 Score=50.69 Aligned_cols=21 Identities=33% Similarity=0.639 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHhhhhhc
Q 015825 136 VVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~ 156 (399)
++|+|++|||||||++.+...
T Consensus 9 ivvvG~~~vGKTsli~~l~~~ 29 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSDD 29 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHhhC
Confidence 789999999999999998764
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.36 E-value=0.0088 Score=49.54 Aligned_cols=22 Identities=32% Similarity=0.617 Sum_probs=19.6
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
-++|+|.+|||||||++.+...
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~~ 29 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQS 29 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999998764
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.35 E-value=0.0089 Score=53.04 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+-+.|.||+|||||++++.|+...
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhhcc
Confidence 567899999999999999999864
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=94.35 E-value=0.0094 Score=51.99 Aligned_cols=24 Identities=25% Similarity=0.513 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++++|.|+.||||||+.+.|...+
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e~~ 25 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMSNY 25 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC
Confidence 479999999999999999997643
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.35 E-value=0.0087 Score=49.44 Aligned_cols=21 Identities=24% Similarity=0.635 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHhhhhhc
Q 015825 136 VVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~ 156 (399)
++|+|.+|||||||++.+...
T Consensus 8 I~lvG~~~vGKTsll~~~~~~ 28 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIEK 28 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 799999999999999998754
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=94.33 E-value=0.009 Score=49.91 Aligned_cols=23 Identities=30% Similarity=0.232 Sum_probs=20.6
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-++++|...||||||+|.|.+..
T Consensus 7 nIaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 7 NLGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEEeCCCCcHHHHHHHHHHhc
Confidence 48999999999999999998743
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=94.31 E-value=0.012 Score=52.26 Aligned_cols=25 Identities=40% Similarity=0.610 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+-+.|.||+|+|||++++.|+...
T Consensus 42 ~~giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 42 PKGVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CceEEEecCCCCChhHHHHHHHHHc
Confidence 3568999999999999999999865
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.30 E-value=0.0098 Score=48.97 Aligned_cols=22 Identities=36% Similarity=0.596 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
-++++|.+|||||||++.+...
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~~ 29 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3689999999999999999854
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.28 E-value=0.01 Score=48.86 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-++++|.+|||||||++.+.+..
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~~ 27 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 36899999999999999987653
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=94.20 E-value=0.0085 Score=50.59 Aligned_cols=25 Identities=32% Similarity=0.426 Sum_probs=22.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhh
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMK 155 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~ 155 (399)
..|+-+.|.||||+||||++-.|..
T Consensus 13 ~~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 13 VFGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHT
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4688899999999999999988765
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.14 E-value=0.011 Score=48.62 Aligned_cols=21 Identities=38% Similarity=0.612 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHhhhhhc
Q 015825 136 VVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~ 156 (399)
++++|++|||||||++.+...
T Consensus 9 i~vvG~~~vGKTsli~~~~~~ 29 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKDG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 799999999999999988654
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=94.13 E-value=0.013 Score=49.35 Aligned_cols=26 Identities=38% Similarity=0.422 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
..|+-+.|+|+||+||||++-.|...
T Consensus 12 ~~g~gvl~~G~sG~GKStlal~l~~~ 37 (176)
T d1kkma_ 12 IYGLGVLITGDSGVGKSETALELVQR 37 (176)
T ss_dssp ETTEEEEEECCTTSCHHHHHHHHHHT
T ss_pred ECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 46889999999999999998887653
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.07 E-value=0.012 Score=50.54 Aligned_cols=25 Identities=20% Similarity=0.169 Sum_probs=22.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhh
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMK 155 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~ 155 (399)
.+|+++.|.||+|+||||++..++-
T Consensus 32 ~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 32 ETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp ESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 4899999999999999999887754
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.04 E-value=0.012 Score=52.65 Aligned_cols=27 Identities=33% Similarity=0.507 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
..+-+.|.||+|+|||++++++++...
T Consensus 40 ~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 40 PSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 456688999999999999999999764
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=94.04 E-value=0.012 Score=48.47 Aligned_cols=22 Identities=36% Similarity=0.664 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
-++|+|.+|||||||++.+...
T Consensus 6 KivlvG~~~vGKTsli~~~~~~ 27 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 4789999999999999998753
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.98 E-value=0.01 Score=51.20 Aligned_cols=22 Identities=36% Similarity=0.693 Sum_probs=20.1
Q ss_pred EEEEcCCCCCHHHHHhhhhhcc
Q 015825 136 VVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+.|.||+|+||||++++|+..+
T Consensus 38 lLl~Gp~G~GKttl~~~la~~l 59 (227)
T d1sxjc2 38 LLFYGPPGTGKTSTIVALAREI 59 (227)
T ss_dssp EEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChhHHHHHHHHHh
Confidence 6799999999999999998864
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.96 E-value=0.0084 Score=49.61 Aligned_cols=21 Identities=29% Similarity=0.583 Sum_probs=8.5
Q ss_pred EEEEcCCCCCHHHHHhhhhhc
Q 015825 136 VVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~ 156 (399)
++|+|.+|||||||++.|++.
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999988764
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.93 E-value=0.013 Score=48.26 Aligned_cols=21 Identities=33% Similarity=0.672 Sum_probs=18.9
Q ss_pred EEEEcCCCCCHHHHHhhhhhc
Q 015825 136 VVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~ 156 (399)
++++|.+|||||||++.+.+.
T Consensus 7 i~lvG~~~vGKTsll~~~~~~ 27 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQK 27 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 688999999999999998764
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.92 E-value=0.013 Score=48.01 Aligned_cols=22 Identities=32% Similarity=0.611 Sum_probs=19.5
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
-++++|.+|||||||++.+...
T Consensus 5 KivvvG~~~vGKTsli~r~~~~ 26 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999998764
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.86 E-value=0.012 Score=51.25 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+.|.||+|+||||+++.++..+
T Consensus 35 ~lll~Gp~G~GKTt~~~~la~~l 57 (252)
T d1sxje2 35 HLLLYGPNGTGKKTRCMALLESI 57 (252)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHhh
Confidence 37899999999999999998764
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=93.85 E-value=0.0073 Score=53.21 Aligned_cols=23 Identities=30% Similarity=0.365 Sum_probs=19.7
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++.|.||+|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 35566999999999999999875
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.80 E-value=0.013 Score=49.05 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=19.0
Q ss_pred EEEEcCCCCCHHHHHhhhhhc
Q 015825 136 VVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~ 156 (399)
++|+|.+|||||||++.+...
T Consensus 12 i~lvG~~~vGKTsLi~r~~~~ 32 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYAND 32 (185)
T ss_dssp EEEEECTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhhC
Confidence 799999999999999998754
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.74 E-value=0.015 Score=48.25 Aligned_cols=28 Identities=18% Similarity=0.307 Sum_probs=23.0
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccCCccc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFPSMFG 162 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~~~~g 162 (399)
-++|+|.+|||||||++.+.....+..|
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~ 31 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTG 31 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCcc
Confidence 3789999999999999999766555555
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.73 E-value=0.013 Score=49.19 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.3
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
-++++|.+|||||||++.+...
T Consensus 5 KvvllG~~~vGKTSli~r~~~~ 26 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYTTN 26 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999998764
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.72 E-value=0.014 Score=48.85 Aligned_cols=20 Identities=20% Similarity=0.484 Sum_probs=18.1
Q ss_pred EEEEEcCCCCCHHHHHhhhh
Q 015825 135 PVVITGPSGVGKGTLISMLM 154 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~ 154 (399)
-++|+|.+|||||||++.+.
T Consensus 4 KivllG~~~vGKTsll~r~~ 23 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMR 23 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 37899999999999999983
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.68 E-value=0.018 Score=51.15 Aligned_cols=26 Identities=23% Similarity=0.485 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+-+.|.||+|+|||+++++++....
T Consensus 38 ~~giLL~GppGtGKT~l~~ala~~~~ 63 (258)
T d1e32a2 38 PRGILLYGPPGTGKTLIARAVANETG 63 (258)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CceeEEecCCCCCchHHHHHHHHHhC
Confidence 35588999999999999999998653
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.68 E-value=0.016 Score=48.34 Aligned_cols=23 Identities=22% Similarity=0.342 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|.+|||||||++.+.+..
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~~~ 29 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLTGS 29 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 58999999999999999887653
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.62 E-value=0.014 Score=48.57 Aligned_cols=22 Identities=32% Similarity=0.619 Sum_probs=19.2
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
-++|+|.+|||||||++.+...
T Consensus 4 KivliG~~~vGKTsli~r~~~~ 25 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAKD 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCcCHHHHHHHHHhC
Confidence 3789999999999999988764
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=93.51 E-value=0.02 Score=47.82 Aligned_cols=27 Identities=37% Similarity=0.448 Sum_probs=22.6
Q ss_pred CCCCcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 130 GNVEKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
...|+-+.|.|+||+||||+.-.|...
T Consensus 12 ~~~g~gvli~G~sg~GKS~la~~l~~~ 38 (169)
T d1ko7a2 12 DVYGVGVLITGDSGIGKSETALELIKR 38 (169)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHHT
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHHHc
Confidence 357889999999999999998776653
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=93.48 E-value=0.02 Score=52.02 Aligned_cols=39 Identities=23% Similarity=0.223 Sum_probs=29.9
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR 173 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~ 173 (399)
-.++|+|-+-||||||+++|.+.-.+..+ ..+.||..+.
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~~~~~~a-nypftTi~pn 49 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKSVLGNPA-NYPYATIDPE 49 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTTTSTT-CCSSCCCCTT
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCCCCcC-CCCccCccCC
Confidence 45999999999999999999976443344 5666776554
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=93.39 E-value=0.021 Score=50.23 Aligned_cols=24 Identities=29% Similarity=0.401 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhh
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMK 155 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~ 155 (399)
..++++|.|||.+||||++|.+.-
T Consensus 40 ~~~~~iiTGpN~~GKSt~lk~i~l 63 (234)
T d1wb9a2 40 QRRMLIITGPNMGGKSTYMRQTAL 63 (234)
T ss_dssp SSCEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEeccCchhhHHHHHHHHH
Confidence 458899999999999999999753
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.34 E-value=0.021 Score=49.30 Aligned_cols=26 Identities=19% Similarity=0.050 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.+|+++.|.||+|||||++...++..
T Consensus 35 p~G~~~~i~G~~GsGKT~lalq~~~~ 60 (258)
T d1v5wa_ 35 ESMAITEAFGEFRTGKTQLSHTLCVT 60 (258)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 58999999999999999999888653
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=93.31 E-value=0.018 Score=49.86 Aligned_cols=28 Identities=18% Similarity=0.313 Sum_probs=22.0
Q ss_pred EEEEEcCCCCCHHHHHhhhh-hccCCccc
Q 015825 135 PVVITGPSGVGKGTLISMLM-KEFPSMFG 162 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~-~~~~~~~g 162 (399)
-++|+|.+|||||||++.+. +...|+.|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 47999999999999999884 44445555
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=93.30 E-value=0.017 Score=53.15 Aligned_cols=24 Identities=33% Similarity=0.606 Sum_probs=21.9
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccC
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+.|+||+|+|||.|++.|+..+.
T Consensus 54 ~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 54 SFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCcchhHHHHHHHHhhcc
Confidence 688999999999999999998764
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=93.27 E-value=0.022 Score=50.57 Aligned_cols=26 Identities=23% Similarity=0.373 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.+|++++|.|++|+||||++..|+-.
T Consensus 33 ~~G~l~vi~G~~G~GKT~~~~~la~~ 58 (277)
T d1cr2a_ 33 RGGEVIMVTSGSGMGKSTFVRQQALQ 58 (277)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHh
Confidence 48999999999999999998888754
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=93.21 E-value=0.026 Score=54.36 Aligned_cols=28 Identities=32% Similarity=0.492 Sum_probs=24.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
+..+-+.++||+|||||-|++.|++.+.
T Consensus 47 i~ksNILliGPTGvGKTlLAr~LAk~l~ 74 (443)
T d1g41a_ 47 VTPKNILMIGPTGVGKTEIARRLAKLAN 74 (443)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred cccccEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456799999999999999999999764
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=93.18 E-value=0.02 Score=49.62 Aligned_cols=25 Identities=24% Similarity=0.271 Sum_probs=21.9
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhh
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMK 155 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~ 155 (399)
.+|+++.|.||+|+||||+.-.++-
T Consensus 34 p~G~~~li~G~pGsGKT~~~lq~~~ 58 (254)
T d1pzna2 34 ETQAITEVFGEFGSGKTQLAHTLAV 58 (254)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEEcCCCCCHHHHHHHHHH
Confidence 5899999999999999999876654
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=92.92 E-value=0.024 Score=49.21 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=20.4
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
+++++|...||||||++.|.+.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 5999999999999999999875
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=92.88 E-value=0.025 Score=53.01 Aligned_cols=28 Identities=25% Similarity=0.330 Sum_probs=25.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.+++.++|.||+|+|||++.+.|+..+.
T Consensus 152 ~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 152 PKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 4678999999999999999999999764
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=92.87 E-value=0.024 Score=53.17 Aligned_cols=27 Identities=26% Similarity=0.556 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
+...+.|+||+|||||-|.+.|+....
T Consensus 67 p~~niLfiGPTGvGKTElAk~LA~~~~ 93 (364)
T d1um8a_ 67 SKSNILLIGPTGSGKTLMAQTLAKHLD 93 (364)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTT
T ss_pred CCcceeeeCCCCccHHHHHHHHHhhcc
Confidence 345689999999999999999998763
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=92.84 E-value=0.022 Score=52.02 Aligned_cols=22 Identities=27% Similarity=0.305 Sum_probs=19.2
Q ss_pred EEEEcCCCCCHHHHHhhhhhcc
Q 015825 136 VVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++|+|-+-||||||+|+|.+..
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EeEECCCCCCHHHHHHHHHCCC
Confidence 7999999999999999999864
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=92.75 E-value=0.026 Score=48.34 Aligned_cols=27 Identities=15% Similarity=0.226 Sum_probs=23.5
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+|+++.|.|++|+||||++..++-..
T Consensus 32 ~~G~l~~i~G~~G~GKT~~~l~~a~~~ 58 (258)
T d2i1qa2 32 ESQSVTEFAGVFGSGKTQIMHQSCVNL 58 (258)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 479999999999999999988886544
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.70 E-value=0.028 Score=48.55 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=23.2
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
.+|.++.|.||+|||||+++..++-.
T Consensus 24 ~~gsl~li~G~pGsGKT~l~~qia~~ 49 (242)
T d1tf7a2 24 FKDSIILATGATGTGKTLLVSRFVEN 49 (242)
T ss_dssp ESSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHH
Confidence 48999999999999999999888765
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=92.65 E-value=0.017 Score=53.07 Aligned_cols=26 Identities=31% Similarity=0.505 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
.-+.|.||.|+||||+++.|.+.+++
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCCC
Confidence 35789999999999999999998865
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=92.56 E-value=0.031 Score=47.56 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=21.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhh
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLM 154 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~ 154 (399)
.+|+++.|.|++|+|||+++..++
T Consensus 24 ~~G~~~~I~G~~G~GKT~la~~~~ 47 (242)
T d1tf7a1 24 PIGRSTLVSGTSGTGKTLFSIQFL 47 (242)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHH
Confidence 489999999999999999986544
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.52 E-value=0.026 Score=46.87 Aligned_cols=23 Identities=22% Similarity=0.346 Sum_probs=19.8
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-++++|.+|||||||++.+....
T Consensus 4 Kiv~lG~~~vGKTsll~r~~~~~ 26 (200)
T d2bcjq2 4 KLLLLGTGESGKSTFIKQMRIIH 26 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999996553
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=92.47 E-value=0.034 Score=48.52 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=20.4
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhh
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMK 155 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~ 155 (399)
.+++++|.|||.+||||+++.+.-
T Consensus 34 ~~~~~iiTGpN~~GKSt~lk~i~l 57 (224)
T d1ewqa2 34 AHELVLITGPNMAGKSTFLRQTAL 57 (224)
T ss_dssp SSCEEEEESCSSSSHHHHHHHHHH
T ss_pred CCcEEEEECCCccccchhhhhhHH
Confidence 346899999999999999998743
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=92.25 E-value=0.037 Score=45.57 Aligned_cols=27 Identities=26% Similarity=0.329 Sum_probs=24.4
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
+|.++.|-|+=||||||+.+.++..+.
T Consensus 32 ~g~ii~L~G~LGaGKTtfvr~~~~~lg 58 (158)
T d1htwa_ 32 KAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred CCeEEEEecCCCccHHHHHHHHHhhcc
Confidence 678999999999999999999988764
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=92.06 E-value=0.032 Score=52.90 Aligned_cols=28 Identities=32% Similarity=0.538 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
+.-.+.|.||.||||||++..+....+.
T Consensus 157 ~~GliLvtGpTGSGKSTTl~~~l~~~~~ 184 (401)
T d1p9ra_ 157 PHGIILVTGPTGSGKSTTLYAGLQELNS 184 (401)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred hhceEEEEcCCCCCccHHHHHHhhhhcC
Confidence 5568999999999999999999887643
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=91.85 E-value=0.032 Score=48.45 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=19.9
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
+++|.|.-|||||||++.|+..
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 5789999999999999999875
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=91.78 E-value=0.042 Score=48.41 Aligned_cols=26 Identities=23% Similarity=0.314 Sum_probs=22.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
++|.++.|.|++|+||||++-.|+-.
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la~~ 52 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLAAQ 52 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 46899999999999999998777643
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=91.21 E-value=0.043 Score=47.29 Aligned_cols=24 Identities=33% Similarity=0.534 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++.|.||+|+|||-|+++++...
T Consensus 37 n~l~l~G~~G~GKTHLl~A~~~~~ 60 (213)
T d1l8qa2 37 NPIFIYGSVGTGKTHLLQAAGNEA 60 (213)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHHHHh
Confidence 458899999999999999998754
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=91.13 E-value=0.055 Score=48.82 Aligned_cols=23 Identities=17% Similarity=0.429 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|...+|||||+|+|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999964
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=91.13 E-value=0.045 Score=46.63 Aligned_cols=24 Identities=29% Similarity=0.533 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.-..|+||+|+|||+++..|+..+
T Consensus 44 ~n~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 44 NNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEecCCcccHHHHHHHHHHH
Confidence 457899999999999999998765
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.10 E-value=0.062 Score=48.26 Aligned_cols=24 Identities=29% Similarity=0.277 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+++++||-++|||||+|.|.+..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 478999999999999999999864
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.92 E-value=0.059 Score=48.34 Aligned_cols=23 Identities=13% Similarity=0.356 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.++++|.-.+|||||+|+|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999964
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=90.47 E-value=0.053 Score=48.53 Aligned_cols=24 Identities=29% Similarity=0.421 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.-..|+||+|+|||++++.|+..+
T Consensus 40 ~n~lLVG~~GvGKTalv~~la~ri 63 (268)
T d1r6bx2 40 NNPLLVGESGVGKTAIAEGLAWRI 63 (268)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEECCCCCcHHHHHHHHHHHH
Confidence 457899999999999999998754
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=90.21 E-value=0.085 Score=47.04 Aligned_cols=37 Identities=30% Similarity=0.264 Sum_probs=25.2
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccCCcccceeeecCCCcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHTTRAPR 173 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~ttr~~~ 173 (399)
.+||+|-+-||||||+++|.+.-. ..+ ..+.||-.+.
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~~-~~~-~ypf~ti~pn 40 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAGI-EAA-NYPFCTIEPN 40 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC--------CCCCCCCC
T ss_pred eEEEECCCCCCHHHHHHHHHCCCC-ccc-cCCCCCCCCc
Confidence 589999999999999999997643 333 4455665544
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.11 E-value=0.074 Score=45.36 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 133 EKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 133 g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
...+.|.||+|+||||+++.++..+
T Consensus 24 ~h~lLl~Gp~G~GKtt~a~~~a~~l 48 (207)
T d1a5ta2 24 HHALLIQALPGMGDDALIYALSRYL 48 (207)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHhc
Confidence 4468999999999999999998765
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=89.95 E-value=0.078 Score=47.88 Aligned_cols=27 Identities=19% Similarity=0.321 Sum_probs=24.3
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-+|...+|.|++|+|||||+..|+...
T Consensus 41 grGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 41 GRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp BTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 489999999999999999999998754
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=89.95 E-value=0.067 Score=47.82 Aligned_cols=22 Identities=36% Similarity=0.608 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCCHHHHHhhhhh
Q 015825 134 KPVVITGPSGVGKGTLISMLMK 155 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~ 155 (399)
|.++++|+.|+|||||+.+|+.
T Consensus 3 RNv~iiGh~~~GKTtL~e~ll~ 24 (267)
T d2dy1a2 3 RTVALVGHAGSGKTTLTEALLY 24 (267)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEcCCCCcHHHHHHHHHH
Confidence 4689999999999999999954
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=89.89 E-value=0.077 Score=47.34 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
...+++|.|+.|+|||||++.+...
T Consensus 43 ~~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 43 DSFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHh
Confidence 3578999999999999999998654
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=89.85 E-value=0.057 Score=49.42 Aligned_cols=23 Identities=35% Similarity=0.635 Sum_probs=20.9
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
.+.|+||+|+|||.+++.|+..+
T Consensus 55 ~~lf~Gp~G~GKt~lak~la~~l 77 (315)
T d1qvra3 55 SFLFLGPTGVGKTELAKTLAATL 77 (315)
T ss_dssp EEEEBSCSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCcchHHHHHHHHHHHh
Confidence 67889999999999999999875
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=89.73 E-value=0.078 Score=46.04 Aligned_cols=25 Identities=28% Similarity=0.563 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
..+.|.||+|+||||++++++..+.
T Consensus 35 ~~~Ll~Gp~G~GKtt~a~~~~~~l~ 59 (239)
T d1njfa_ 35 HAYLFSGTRGVGKTSIARLLAKGLN 59 (239)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eeEEEECCCCCcHHHHHHHHHHHhc
Confidence 4578899999999999999987653
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=89.26 E-value=0.09 Score=48.22 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 134 KPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-.+.|.||+|||||.|.+.|++..
T Consensus 124 g~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 124 GMVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp EEEEEECSSSSCHHHHHHHHHHHH
T ss_pred ceEEEECCCCccHHHHHHHHHHHh
Confidence 345667999999999999999875
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=89.25 E-value=0.11 Score=46.14 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
..|+++-|.||+|+||||++-.++....
T Consensus 52 ~~g~itei~G~~gsGKTtl~l~~~~~~q 79 (263)
T d1u94a1 52 PMGRIVEIYGPESSGKTTLTLQVIAAAQ 79 (263)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHH
Confidence 4789999999999999999877776543
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=89.10 E-value=0.094 Score=43.92 Aligned_cols=22 Identities=27% Similarity=0.348 Sum_probs=20.0
Q ss_pred EEEEcCCCCCHHHHHhhhhhcc
Q 015825 136 VVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 136 ~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
++++|.-.+|||||++.|.+..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999998754
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=88.78 E-value=0.1 Score=47.67 Aligned_cols=23 Identities=39% Similarity=0.534 Sum_probs=19.7
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHh
Q 015825 129 IGNVEKPVVITGPSGVGKGTLIS 151 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~ 151 (399)
.+..|.+..|.|.||+|||||..
T Consensus 10 ~~~~~~valffGLSGTGKTTLs~ 32 (318)
T d1j3ba1 10 VGKEGDVAVFFGLSGTGKTTLST 32 (318)
T ss_dssp ECTTCCEEEEEECTTSCHHHHTC
T ss_pred cCCCCCEEEEEccCCCCcccccc
Confidence 45578999999999999999764
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=88.72 E-value=0.096 Score=46.97 Aligned_cols=22 Identities=18% Similarity=0.234 Sum_probs=19.8
Q ss_pred cEEEEEcCCCCCHHHHHhhhhh
Q 015825 134 KPVVITGPSGVGKGTLISMLMK 155 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~~~L~~ 155 (399)
+-++|+|+.|+|||||+..|+-
T Consensus 7 Rni~i~gh~~~GKTtL~e~ll~ 28 (276)
T d2bv3a2 7 RNIGIAAHIDAGKTTTTERILY 28 (276)
T ss_dssp EEEEEEECTTSCHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHH
Confidence 5699999999999999999953
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=88.34 E-value=0.11 Score=44.18 Aligned_cols=21 Identities=33% Similarity=0.270 Sum_probs=19.0
Q ss_pred EEEEEcCCCCCHHHHHhhhhh
Q 015825 135 PVVITGPSGVGKGTLISMLMK 155 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~ 155 (399)
-++++|..++|||||+++|..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHH
Confidence 389999999999999999964
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.68 E-value=0.15 Score=45.56 Aligned_cols=27 Identities=22% Similarity=0.270 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
..|+++-|.||+|+||||++-.++...
T Consensus 58 ~~g~i~e~~G~~~~GKT~l~l~~~~~~ 84 (269)
T d1mo6a1 58 PRGRVIEIYGPESSGKTTVALHAVANA 84 (269)
T ss_dssp CSSSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ccceeEEEecCCCcHHHHHHHHHHHHH
Confidence 479999999999999999987766543
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=87.65 E-value=0.16 Score=46.70 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=22.2
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
.++|=|+-||||||+++.|...+..
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~ 31 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAI 31 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhh
Confidence 5889999999999999999987654
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=87.38 E-value=0.15 Score=46.98 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=22.0
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
.++|=|+-||||||+++.|...+..
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~ 32 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASG 32 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred EEEEECCccCCHHHHHHHHHHHhcc
Confidence 5788999999999999999987654
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=87.07 E-value=0.15 Score=46.36 Aligned_cols=22 Identities=41% Similarity=0.516 Sum_probs=19.4
Q ss_pred CCCCcEEEEEcCCCCCHHHHHh
Q 015825 130 GNVEKPVVITGPSGVGKGTLIS 151 (399)
Q Consensus 130 ~~~g~~~~l~GpsG~GKSTl~~ 151 (399)
+..|.+..|.|.||+|||||-.
T Consensus 11 ~~~~~~alfFGLSGTGKTTLs~ 32 (313)
T d2olra1 11 GEKGDVAVFFGLSGTGKTTLST 32 (313)
T ss_dssp CTTSCEEEEECSTTSSHHHHHC
T ss_pred CCCCCEEEEEccCCCCccccee
Confidence 4578999999999999999874
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=87.03 E-value=0.12 Score=47.40 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=19.4
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccC
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
.++|=|+-||||||+++.|...+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCcCCCHHHHHHHHHHHhC
Confidence 478899999999999999987653
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=87.02 E-value=0.16 Score=45.32 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccC
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
..|+++-|.||+|+||||++-.++....
T Consensus 55 p~g~itei~G~~~sGKT~l~l~~~~~aq 82 (268)
T d1xp8a1 55 PRGRITEIYGPESGGKTTLALAIVAQAQ 82 (268)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCceEEEEecCCccchHHHHHHHHHHHH
Confidence 5899999999999999999988876543
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=86.36 E-value=0.14 Score=48.00 Aligned_cols=25 Identities=24% Similarity=0.498 Sum_probs=20.1
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
..+-+.++|++|+|||++++.|+..
T Consensus 49 ~~~H~~I~G~tGsGKT~~l~~li~~ 73 (433)
T d1e9ra_ 49 EPRHLLVNGATGTGKSVLLRELAYT 73 (433)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHH
T ss_pred ccceEEEEeCCCCcHHHHHHHHHHH
Confidence 3466899999999999998766543
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.45 E-value=0.22 Score=38.77 Aligned_cols=28 Identities=18% Similarity=0.213 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhccCC
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEFPS 159 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~~~ 159 (399)
+|-.+.|.|-||+||||+.++|.-.+..
T Consensus 5 qgf~i~~tg~~~~gk~~ia~al~~~l~q 32 (122)
T d1g8fa3 5 QGFSIVLGNSLTVSREQLSIALLSTFLQ 32 (122)
T ss_dssp CCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred cceEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 5778899999999999999999665544
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=85.43 E-value=0.21 Score=46.27 Aligned_cols=22 Identities=36% Similarity=0.563 Sum_probs=19.1
Q ss_pred CCcEEEEEcCCCCCHHHHHhhh
Q 015825 132 VEKPVVITGPSGVGKGTLISML 153 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L 153 (399)
.+++++|.||.|+||||++..+
T Consensus 162 ~~~~~vI~G~pGTGKTt~i~~~ 183 (359)
T d1w36d1 162 TRRISVISGGPGTGKTTTVAKL 183 (359)
T ss_dssp TBSEEEEECCTTSTHHHHHHHH
T ss_pred cCCeEEEEcCCCCCceehHHHH
Confidence 5789999999999999987554
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=84.93 E-value=0.18 Score=47.35 Aligned_cols=22 Identities=32% Similarity=0.554 Sum_probs=18.6
Q ss_pred EEEEEcCCCCCHHHHHhhhhhc
Q 015825 135 PVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
-.+|+|++|+|||+++.-|+..
T Consensus 45 n~llvG~~GvGKtaiv~~la~~ 66 (387)
T d1qvra2 45 NPVLIGEPGVGKTAIVEGLAQR 66 (387)
T ss_dssp CCEEEECTTSCHHHHHHHHHHH
T ss_pred CCeEECCCCCCHHHHHHHHHHH
Confidence 3588999999999999877754
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=84.76 E-value=0.25 Score=42.00 Aligned_cols=35 Identities=20% Similarity=0.276 Sum_probs=28.0
Q ss_pred CCCcEEEEEcCCCCCHHHHHhhhhhccCCcccceeeec
Q 015825 131 NVEKPVVITGPSGVGKGTLISMLMKEFPSMFGFSVSHT 168 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKSTl~~~L~~~~~~~~g~~i~~t 168 (399)
.+...++|.||.++|||+++..|+..+ .|..++++
T Consensus 51 PKkn~i~~~GP~~TGKS~f~~sl~~~l---~G~vis~~ 85 (205)
T d1tuea_ 51 PKKNCLVFCGPANTGKSYFGMSFIHFI---QGAVISFV 85 (205)
T ss_dssp TTCSEEEEESCGGGCHHHHHHHHHHHH---TCEECCCC
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHh---CCEEEecc
Confidence 466899999999999999999999886 35344443
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.68 E-value=0.25 Score=44.09 Aligned_cols=25 Identities=32% Similarity=0.452 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKE 156 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~ 156 (399)
+|+..+|.|++|+|||||+..++..
T Consensus 67 kGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 67 KGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp TTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 7999999999999999998888754
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=84.18 E-value=0.24 Score=41.62 Aligned_cols=24 Identities=21% Similarity=0.342 Sum_probs=21.0
Q ss_pred EEEEEcCCCCCHHHHHhhhhhccC
Q 015825 135 PVVITGPSGVGKGTLISMLMKEFP 158 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~~ 158 (399)
-++++|.-.+|||||++.|.+...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 489999999999999999987543
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=83.86 E-value=0.22 Score=44.34 Aligned_cols=17 Identities=29% Similarity=0.632 Sum_probs=13.7
Q ss_pred cEEEEEcCCCCCHHHHH
Q 015825 134 KPVVITGPSGVGKGTLI 150 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~ 150 (399)
.++.+.|+.||||||++
T Consensus 25 g~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 25 GPLLIMAGAGSGKTRVL 41 (318)
T ss_dssp SCEEEEECTTSCHHHHH
T ss_pred CCEEEEecCCccHHHHH
Confidence 35778899999999754
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=83.66 E-value=0.23 Score=43.72 Aligned_cols=17 Identities=29% Similarity=0.589 Sum_probs=14.1
Q ss_pred cEEEEEcCCCCCHHHHH
Q 015825 134 KPVVITGPSGVGKGTLI 150 (399)
Q Consensus 134 ~~~~l~GpsG~GKSTl~ 150 (399)
.++.|.|+.|+||||++
T Consensus 15 ~~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 15 GPCLVLAGAGSGKTRVI 31 (306)
T ss_dssp SEEEECCCTTSCHHHHH
T ss_pred CCEEEEeeCCccHHHHH
Confidence 46788899999999853
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=83.39 E-value=0.32 Score=44.21 Aligned_cols=23 Identities=39% Similarity=0.533 Sum_probs=19.8
Q ss_pred cCCCCcEEEEEcCCCCCHHHHHh
Q 015825 129 IGNVEKPVVITGPSGVGKGTLIS 151 (399)
Q Consensus 129 ~~~~g~~~~l~GpsG~GKSTl~~ 151 (399)
.+..|.+..|.|-||+|||||..
T Consensus 10 ~~~~gd~alfFGLSGTGKTTLs~ 32 (323)
T d1ii2a1 10 VGKQGDVTVFFGLSGTGKTTLSA 32 (323)
T ss_dssp ECTTCCEEEEECCTTSSHHHHHC
T ss_pred cCCCCCEEEEEccCCCCccccee
Confidence 34578999999999999999983
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=81.87 E-value=0.4 Score=38.11 Aligned_cols=24 Identities=38% Similarity=0.328 Sum_probs=19.8
Q ss_pred CcEEEEEcCCCCCHHH-HHhhhhhc
Q 015825 133 EKPVVITGPSGVGKGT-LISMLMKE 156 (399)
Q Consensus 133 g~~~~l~GpsG~GKST-l~~~L~~~ 156 (399)
|.+..++||-.||||| |++.+...
T Consensus 2 G~L~~i~GpMfsGKTteLi~~~~~~ 26 (139)
T d2b8ta1 2 GWIEFITGPMFAGKTAELIRRLHRL 26 (139)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEEccccCHHHHHHHHHHHHH
Confidence 6788999999999999 77776443
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=81.82 E-value=0.41 Score=42.36 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCCHHHHHhhhhhcc
Q 015825 132 VEKPVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 132 ~g~~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
+..++.|.||.++|||++++.|...+
T Consensus 103 k~n~~~l~G~~~tGKS~f~~~i~~~l 128 (267)
T d1u0ja_ 103 KRNTIWLFGPATTGKTNIAEAIAHTV 128 (267)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred ccEEEEEEcCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999999987
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
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class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=81.31 E-value=0.37 Score=40.48 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=20.2
Q ss_pred EEEEEcCCCCCHHHHHhhhhhcc
Q 015825 135 PVVITGPSGVGKGTLISMLMKEF 157 (399)
Q Consensus 135 ~~~l~GpsG~GKSTl~~~L~~~~ 157 (399)
-++++|.-.+|||||++.|.+..
T Consensus 5 ni~iiGHvd~GKSTL~~~l~~~~ 27 (196)
T d1d2ea3 5 NVGTIGHVDHGKTTLTAAITKIL 27 (196)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHHH
Confidence 38999999999999999998643
|
| >d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Clostridium acetobutylicum [TaxId: 1488]
Probab=80.96 E-value=0.46 Score=37.84 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=20.1
Q ss_pred CCCcEEEEEcCCCCCHHH-HHhhhhh
Q 015825 131 NVEKPVVITGPSGVGKGT-LISMLMK 155 (399)
Q Consensus 131 ~~g~~~~l~GpsG~GKST-l~~~L~~ 155 (399)
..|.+.+++||--||||| |++.+..
T Consensus 5 ~~G~l~lI~GpMfSGKTteLi~~~~~ 30 (141)
T d1xx6a1 5 DHGWVEVIVGPMYSGKSEELIRRIRR 30 (141)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred cceeEEEEEeccccHHHHHHHHHHHH
Confidence 368999999999999999 5555533
|