Citrus Sinensis ID: 015881

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
MATTSLLPKSTSPFLSNPLSSLPSTHFIKPSPLFNPPDNHSLLITTKRLSFQTHAKKKNPWLDPFDDGEDPDMQYGSLFADGKQDEDPRPPDDPNNPYGFLKFPMGFNPEIASLPLKIRGDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFITTPGQVRMSSYTIFNIAEGK
ccccccccccccccccccccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccHHHHHHHHHHHHHHHHccccEEEEEEccccHHHHHHcccccEEEEEccccccccHHHHHHHHHHHHcccccEEEEcccccHHHHHHHHHHccccEEEcccccccccccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccEEEccHHHHHHHHHHHHHcccccccEEEEccccccHHHHcccccccccccHHHHHHHHHHHHHHcccEEEEcccccHHHHHHHHccccccEEEcccccccccHHHHHHHHccc
cccccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccEEccccccccHccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHcccccEEEEEccccccccHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHcccccEEEEcccccccccccEEcccccccccccHHHHHHHHHHHHHHHccccccccccccccccEEcccHHHHHHHHHHHHHcccccccEEEEEcccccHHHHHcccccccccccHHHHHHHHHHHHHccccEEEEccccHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHccc
mattsllpkstspflsnplsslpsthfikpsplfnppdnhslliTTKRLSFQThakkknpwldpfddgedpdmqygslfadgkqdedprppddpnnpygflkfpmgfnpeiaslplkirgdvrrccciisggvyenllffPAIQllkdrypgvLIDVIASARGKQTFELNKNVRwanvydldddwpepaeytDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDrvsyiypnvnaagAGLLLSETFTAESMNLSERGYNMYEQMVDWlgrpfrsvprhpvpplrVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIesdskasmqsrgdtdsllpIQVWAEIANGlrefrplfviphekeregvedvvgddasivfittpgqvrmssYTIFNIAEGK
mattsllpkstspflsnplsSLPSTHFIKPSPLFNPPDNHSLLITTKRLSfqthakkknpwldpfddGEDPDMQYGSLFADGKQDEDPRPPDDPNNPYGFLKFPMGFNPEIASLPLKIRGDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASargkqtfelnknvrwanvydldddwpepAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKyknagaeqgkyIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRPLFVIPHEkeregvedvvgddASIVfittpgqvrmssytifniaegk
MATTSLLPKstspflsnplsslpsTHFIKPSPLFNPPDNHSLLITTKRLSFQTHAKKKNPWLDPFDDGEDPDMQYGSLFADGKQdedprppddpnnpYGFLKFPMGFNPEIASLPLKIRGDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFITTPGQVRMSSYTIFNIAEGK
******************************************LITT***************************************************YGFLKFPMGFNPEIASLPLKIRGDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGI****************LLPIQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFITTPGQVRMSSYTIFNI****
********KSTSPFLSNPLS***************************************PWLDPFDDGEDPDMQY************************FLKFPMGFNPEIASLPLKIRGDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFITTPGQVRMSSYTIFNIA***
************PFLSNPLSSLPSTHFIKPSPLFNPPDNHSLLITTKRLSFQTHAKKKNPWLDPFDDGEDPDMQYGSLFADG********PDDPNNPYGFLKFPMGFNPEIASLPLKIRGDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESD***********DSLLPIQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFITTPGQVRMSSYTIFNIAEGK
*******PKSTSPFLSNPLSSLPSTHFIKPSPLFNPPDNHSLLITTKRLSFQTHAKKKNPWLDPFDDGEDPDMQYGSLFADGKQDEDPRPPDDPNNPYGFLKFPMGFNPEIASLPLKIRGDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFITTPGQVRMSSYTIFNIAEGK
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MATTSLLPKSTSPFLSNPLSSLPSTHFIKPSPLFNPPDNHSLLITTKRLSFQTHAKKKNPWLDPFDDGEDPDMQYGSLFADGKQDEDPRPPDDPNNPYGFLKFPMGFNPEIASLPLKIRGDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFITTPGQVRMSSYTIFNIAEGK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query399
255543315466 conserved hypothetical protein [Ricinus 0.957 0.819 0.795 1e-173
341833960463 hypothetical protein [Pyrus x bretschnei 0.947 0.816 0.744 1e-170
224115860465 predicted protein [Populus trichocarpa] 0.964 0.827 0.719 1e-165
357467927472 hypothetical protein MTR_4g007080 [Medic 0.922 0.779 0.711 1e-164
356523261467 PREDICTED: uncharacterized protein LOC10 0.957 0.817 0.75 1e-161
363808214471 uncharacterized protein LOC100802136 [Gl 0.962 0.815 0.746 1e-161
359483160466 PREDICTED: uncharacterized protein LOC10 0.942 0.806 0.755 1e-159
449436635466 PREDICTED: uncharacterized protein LOC10 0.952 0.815 0.754 1e-156
297844518460 hypothetical protein ARALYDRAFT_471797 [ 0.939 0.815 0.723 1e-156
18394307461 NDH-dependent cyclic electron flow 1 [Ar 0.929 0.804 0.734 1e-155
>gi|255543315|ref|XP_002512720.1| conserved hypothetical protein [Ricinus communis] gi|223547731|gb|EEF49223.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  613 bits (1581), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 308/387 (79%), Positives = 342/387 (88%), Gaps = 5/387 (1%)

Query: 1   MATTSLLPKSTSPFLSNPLSSLPSTHFIKPSPLFNP--PDNHSLLITTKRLSFQTHAKKK 58
           MA+TSLLPK T PFL+NP SSL STHF KPS   NP  PD+HS        +   HA KK
Sbjct: 1   MASTSLLPKIT-PFLTNP-SSLSSTHFTKPS-FLNPLSPDHHSACARKPTTTTVLHANKK 57

Query: 59  NPWLDPFDDGEDPDMQYGSLFADGKQDEDPRPPDDPNNPYGFLKFPMGFNPEIASLPLKI 118
           NPWLDPFDDGEDP+M+YGSLFADGKQ+EDPRPPD+PNNPYGFLKFP G++ EIASLPLKI
Sbjct: 58  NPWLDPFDDGEDPEMEYGSLFADGKQEEDPRPPDNPNNPYGFLKFPKGYSVEIASLPLKI 117

Query: 119 RGDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANV 178
           RGDVRRCCC+ISGGVYENLLFFPAIQL+KDRYPGV IDV+AS RGKQT+ELNKNVRWAN 
Sbjct: 118 RGDVRRCCCVISGGVYENLLFFPAIQLIKDRYPGVQIDVLASPRGKQTYELNKNVRWAND 177

Query: 179 YDLDDDWPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNA 238
           YD DDDWPEPAEY D+LG++KNRYYDMVLSTKLAGLGHA+FLFMT+ARDRVSYI+PNVNA
Sbjct: 178 YDPDDDWPEPAEYVDMLGILKNRYYDMVLSTKLAGLGHASFLFMTSARDRVSYIHPNVNA 237

Query: 239 AGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVV 298
           AGAGLLLSETFT +  NL+E GY+MY QM+DWLGRPFRSVPRH VPPLRVSISR+LKE V
Sbjct: 238 AGAGLLLSETFTPDITNLAEGGYHMYHQMLDWLGRPFRSVPRHTVPPLRVSISRKLKEFV 297

Query: 299 AEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFRPLFVIP 358
             KY+ AGAE+GKYIVIHGIESDSKASMQSRGDTDSLLP+QVWAEIA  +R F+P+FVIP
Sbjct: 298 EAKYRAAGAEKGKYIVIHGIESDSKASMQSRGDTDSLLPLQVWAEIAKDIRAFKPVFVIP 357

Query: 359 HEKEREGVEDVVGDDASIVFITTPGQV 385
           HEKERE VE++VGDD SIV ITTPGQ+
Sbjct: 358 HEKERENVEEIVGDDTSIVMITTPGQL 384

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|341833960|gb|AEK94315.1| hypothetical protein [Pyrus x bretschneideri] Back     alignment and taxonomy information
>gi|224115860|ref|XP_002332075.1| predicted protein [Populus trichocarpa] gi|222831961|gb|EEE70438.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357467927|ref|XP_003604248.1| hypothetical protein MTR_4g007080 [Medicago truncatula] gi|355505303|gb|AES86445.1| hypothetical protein MTR_4g007080 [Medicago truncatula] Back     alignment and taxonomy information
>gi|356523261|ref|XP_003530259.1| PREDICTED: uncharacterized protein LOC100803710 [Glycine max] Back     alignment and taxonomy information
>gi|363808214|ref|NP_001242232.1| uncharacterized protein LOC100802136 [Glycine max] gi|255635425|gb|ACU18065.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|359483160|ref|XP_002264393.2| PREDICTED: uncharacterized protein LOC100241596 [Vitis vinifera] gi|298204672|emb|CBI25170.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449436635|ref|XP_004136098.1| PREDICTED: uncharacterized protein LOC101205787 [Cucumis sativus] Back     alignment and taxonomy information
>gi|297844518|ref|XP_002890140.1| hypothetical protein ARALYDRAFT_471797 [Arabidopsis lyrata subsp. lyrata] gi|297335982|gb|EFH66399.1| hypothetical protein ARALYDRAFT_471797 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18394307|ref|NP_563986.1| NDH-dependent cyclic electron flow 1 [Arabidopsis thaliana] gi|6587804|gb|AAF18495.1|AC010924_8 ESTs gb|T43280, gb|AA395195 come from this gene [Arabidopsis thaliana] gi|16323198|gb|AAL15333.1| At1g15980/T24D18_8 [Arabidopsis thaliana] gi|21537186|gb|AAM61527.1| unknown [Arabidopsis thaliana] gi|21700921|gb|AAM70584.1| At1g15980/T24D18_8 [Arabidopsis thaliana] gi|332191271|gb|AEE29392.1| NDH-dependent cyclic electron flow 1 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query399
TAIR|locus:2200452461 PnsB1 "Photosynthetic NDH subc 0.869 0.752 0.741 4.3e-141
TAIR|locus:2200452 PnsB1 "Photosynthetic NDH subcomplex B 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1380 (490.8 bits), Expect = 4.3e-141, P = 4.3e-141
 Identities = 258/348 (74%), Positives = 293/348 (84%)

Query:    39 NHSLLITTKRLSFQTHAKKKN-PWLDPFDDGEDPDMQYGSLFADGKQXXXXXXXXXXXXX 97
             N    +T++      + KKKN PWLDPFD GEDPD +YGSLFADGKQ             
Sbjct:    31 NFQTRLTSRSSDVSVNLKKKNNPWLDPFDSGEDPDNEYGSLFADGKQDEDPRPPDNPDNP 90

Query:    98 YGFLKFPMGFNPEIASLPLKIRGDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDV 157
             YGFLKFP G+  E+ASLPLKIRGDVRRCCC+ISGGVYENLLFFP IQL+KDRYPGV +D+
Sbjct:    91 YGFLKFPKGYTVELASLPLKIRGDVRRCCCVISGGVYENLLFFPTIQLIKDRYPGVQVDI 150

Query:   158 IASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHA 217
             + + RGKQT+ELNKNVRWANVYD DD WPEPAEYTD++G++K RYYDMVLSTKLAGLGHA
Sbjct:   151 LTTERGKQTYELNKNVRWANVYDPDDHWPEPAEYTDMIGLLKGRYYDMVLSTKLAGLGHA 210

Query:   218 AFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRS 277
             AFLFMTTARDRVSYIYPNVN+AGAGL+LSETFTAE+ NLSE GY+MY QM DWLGRPFRS
Sbjct:   211 AFLFMTTARDRVSYIYPNVNSAGAGLMLSETFTAENTNLSELGYSMYTQMEDWLGRPFRS 270

Query:   278 VPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLP 337
             VPR P+ PLRVSISR++KEVVA KY+NAGA  GK+IVIHGIESDSKASMQS+GD DSLL 
Sbjct:   271 VPRTPLLPLRVSISRKVKEVVAAKYRNAGAVTGKFIVIHGIESDSKASMQSKGDADSLLS 330

Query:   338 IQVWAEIANGLREFRPLFVIPHEKEREGVEDVVGDDASIVFITTPGQV 385
             ++ WA+I  G+R F+P+FVIPHEKERE VED VGDD SIVFITTPGQ+
Sbjct:   331 LEKWAKIIKGVRGFKPVFVIPHEKERENVEDFVGDDTSIVFITTPGQL 378


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.138   0.418    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      399       371   0.00086  117 3  11 22  0.39    34
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  611 (65 KB)
  Total size of DFA:  241 KB (2130 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  28.29u 0.08s 28.37t   Elapsed:  00:00:04
  Total cpu time:  28.29u 0.08s 28.37t   Elapsed:  00:00:04
  Start:  Tue May 21 02:10:36 2013   End:  Tue May 21 02:10:40 2013
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0009773 "photosynthetic electron transport in photosystem I" evidence=IMP
GO:0010598 "NAD(P)H dehydrogenase complex (plastoquinone)" evidence=IMP;IDA
GO:0009534 "chloroplast thylakoid" evidence=IDA
GO:0006098 "pentose-phosphate shunt" evidence=RCA
GO:0010207 "photosystem II assembly" evidence=RCA
GO:0015979 "photosynthesis" evidence=RCA
GO:0016117 "carotenoid biosynthetic process" evidence=RCA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.02080025
hypothetical protein (465 aa)
(Populus trichocarpa)
Predicted Functional Partners:
gw1.XIII.355.1
hypothetical protein (158 aa)
   •  • 0.533
estExt_fgenesh4_pg.C_LG_X0996
hypothetical protein (187 aa)
   •  • 0.518
grail3.0011003102
hypothetical protein (157 aa)
   •  • 0.460
estExt_Genewise1_v1.C_LG_III1082
SubName- Full=Putative uncharacterized protein; (144 aa)
   •    0.439
gw1.III.2132.1
hypothetical protein (428 aa)
   •    0.428
gw1.I.313.1
SubName- Full=Putative uncharacterized protein; (145 aa)
   •  • 0.423
estExt_fgenesh4_pg.C_LG_X1887
hypothetical protein (235 aa)
   •  • 0.419
estExt_Genewise1_v1.C_LG_I0106
SubName- Full=Putative uncharacterized protein; (286 aa)
   •  • 0.410
estExt_fgenesh4_pg.C_LG_II0752
SubName- Full=Putative uncharacterized protein; (272 aa)
   •    0.405
gw1.1305.1.1
hypothetical protein (232 aa)
   •    0.401

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query399
COG0859334 COG0859, RfaF, ADP-heptose:LPS heptosyltransferase 2e-10
cd03789279 cd03789, GT1_LPS_heptosyltransferase, Lipopolysacc 6e-05
>gnl|CDD|223928 COG0859, RfaF, ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information 
 Score = 61.2 bits (149), Expect = 2e-10
 Identities = 48/253 (18%), Positives = 88/253 (34%), Gaps = 26/253 (10%)

Query: 122 VRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDL 181
           + +   I    + + +L  P ++ LK  YP   IDV+         +LN  +    + D 
Sbjct: 1   MMKILVIRLSKLGDVVLTLPLLRTLKKAYPNAKIDVLVPKGFAPILKLNPEIDKVIIIDK 60

Query: 182 DDDWPEPAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFL-FMTTARDRVSYIYPNVNAAG 240
                   E   +L  ++   YD V+   L GL  +A L  +     R+ +   +     
Sbjct: 61  KKKGLGLKERLALLRTLRKERYDAVID--LQGLLKSALLALLLGIPFRIGFDKKSA---- 114

Query: 241 AGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAE 300
             LLL++ +        +     Y  +++ LG      P+    PL             E
Sbjct: 115 RELLLNKFYPRLDKPEGQHVVERYLALLEDLGLYPPPEPQL-DFPLPRPP--------IE 165

Query: 301 KYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLRE-FRPLFVIPH 359
             KN       YIVI+       +   ++       P++ +AE+A  L      + +   
Sbjct: 166 LAKNLAKFDRPYIVINP----GASRGSAKR-----WPLEHYAELAELLIAKGYQVVLFGG 216

Query: 360 EKEREGVEDVVGD 372
             E E  E++   
Sbjct: 217 PDEEERAEEIAKG 229

Length = 334
>gnl|CDD|99964 cd03789, GT1_LPS_heptosyltransferase, Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 399
PRK10422352 lipopolysaccharide core biosynthesis protein; Prov 100.0
PRK10916348 ADP-heptose:LPS heptosyltransferase II; Provisiona 100.0
TIGR02201344 heptsyl_trn_III lipopolysaccharide heptosyltransfe 100.0
TIGR02195334 heptsyl_trn_II lipopolysaccharide heptosyltransfer 100.0
PRK10964322 ADP-heptose:LPS heptosyl transferase I; Provisiona 100.0
COG0859334 RfaF ADP-heptose:LPS heptosyltransferase [Cell env 100.0
TIGR02193319 heptsyl_trn_I lipopolysaccharide heptosyltransfera 100.0
cd03789279 GT1_LPS_heptosyltransferase Lipopolysaccharide hep 99.97
PF01075247 Glyco_transf_9: Glycosyltransferase family 9 (hept 99.86
PRK10017 426 colanic acid biosynthesis protein; Provisional 97.78
TIGR03568365 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, 97.36
PRK00025380 lpxB lipid-A-disaccharide synthase; Reviewed 97.17
COG1519419 KdtA 3-deoxy-D-manno-octulosonic-acid transferase 96.98
PRK05749 425 3-deoxy-D-manno-octulosonic-acid transferase; Revi 96.15
cd03807365 GT1_WbnK_like This family is most closely related 95.11
PF04007335 DUF354: Protein of unknown function (DUF354); Inte 93.81
PF02684 373 LpxB: Lipid-A-disaccharide synthetase; InterPro: I 93.42
PRK01021 608 lpxB lipid-A-disaccharide synthase; Reviewed 93.04
PRK12446352 undecaprenyldiphospho-muramoylpentapeptide beta-N- 91.86
TIGR01133348 murG undecaprenyldiphospho-muramoylpentapeptide be 91.71
PF13477139 Glyco_trans_4_2: Glycosyl transferase 4-like 91.34
COG0763 381 LpxB Lipid A disaccharide synthetase [Cell envelop 90.83
PRK00726357 murG undecaprenyldiphospho-muramoylpentapeptide be 90.68
cd04951360 GT1_WbdM_like This family is most closely related 90.54
PF04413186 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid 89.69
TIGR03088374 stp2 sugar transferase, PEP-CTERM/EpsH1 system ass 89.06
cd03786363 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of th 88.88
PRK13609380 diacylglycerol glucosyltransferase; Provisional 87.8
cd03808359 GT1_cap1E_like This family is most closely related 87.54
TIGR00661321 MJ1255 conserved hypothetical protein. This model 87.34
PF14595129 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A. 85.82
TIGR03609298 S_layer_CsaB polysaccharide pyruvyl transferase Cs 85.46
cd03785350 GT1_MurG MurG is an N-acetylglucosaminyltransferas 82.08
>PRK10422 lipopolysaccharide core biosynthesis protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.8e-41  Score=339.48  Aligned_cols=249  Identities=14%  Similarity=0.116  Sum_probs=200.2

Q ss_pred             CCccEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhcCCCCCEEEEecCCCC--CCChHHHHHHHHH
Q 015881          120 GDVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDD--WPEPAEYTDILGV  197 (399)
Q Consensus       120 ~~v~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle~nP~ID~Vi~~d~k~~--~~~~~~~~~l~~~  197 (399)
                      .++||||||++++|||+||+||++++||++||+++|||++.+.+++++++||+||+|+.++++..  +..+..+++++++
T Consensus         3 ~~~~~ILii~~~~iGD~vl~~P~l~~Lk~~~P~a~I~~l~~~~~~~l~~~~P~id~vi~~~~~~~~~~~~~~~~~~l~~~   82 (352)
T PRK10422          3 KPFRRILIIKMRFHGDMLLTTPVISSLKKNYPDAKIDVLLYQDTIPILSENPEINALYGIKNKKAGASEKIKNFFSLIKV   82 (352)
T ss_pred             CCCceEEEEEecccCceeeHHHHHHHHHHHCCCCeEEEEeccChHHHhccCCCceEEEEeccccccHHHHHHHHHHHHHH
Confidence            45799999999999999999999999999999999999999999999999999999999997642  1234567889999


Q ss_pred             hhhCCCcEEEEcCCCChHHHHHHHHhCCCeEEEecCCCccccccccccceeeccCcCCchhhHHHHHHHHHHHcCCCCCC
Q 015881          198 MKNRYYDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRS  277 (399)
Q Consensus       198 LR~~~YDlvIdl~~~~~rsAll~~LsgA~~RIGy~~~~~~~~~~~~~lt~~v~~~~~~~~~h~v~~yl~LL~~LGi~~~~  277 (399)
                      ||+++||+|||++++ ++++++++++||+.||||.....+......+|++.++.. .   .|.+++|+++++.+|+.   
T Consensus        83 lr~~~yD~vidl~~~-~~s~ll~~l~~a~~rig~~~~~~~~~~~~~~~~~~~~~~-~---~h~~~~~~~ll~~lg~~---  154 (352)
T PRK10422         83 LRANKYDLIVNLTDQ-WMVALLVRLLNARVKISQDYHHRQSAFWRKSFTHLVPLQ-G---GHIVESNLSVLTPLGLS---  154 (352)
T ss_pred             HhhCCCCEEEEcccc-hHHHHHHHHhCCCeEEeeccccccchhHHHHhcccCCCC-C---cchHHhhHhHHhhcCCC---
Confidence            999999999999999 999999999999999999732211111224677766432 2   58899999999999983   


Q ss_pred             CCCCCCCCceeecCHHHHHHHHHHHHHhCCCCCCeEEEEcCCCCccccccCCCCCCCCCCHHHHHHHHHHhhhCC-CEEE
Q 015881          278 VPRHPVPPLRVSISRRLKEVVAEKYKNAGAEQGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFV  356 (399)
Q Consensus       278 ~p~~~~p~l~i~is~e~~~~a~~~l~~~gl~~~~~IvIhPgas~~~~~~k~rg~~~KrWP~e~faeLa~~L~~~~-~Vvl  356 (399)
                         ...+.+.+.+.+++.+.++..+...+.. +++|+||||+++..          |+||.|+|++|++.|.+.+ +|++
T Consensus       155 ---~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~i~i~pga~~~~----------K~Wp~e~fa~l~~~L~~~~~~vvl  220 (352)
T PRK10422        155 ---SLVKETTMSYRPESWKRMRRQLDHLGVT-QNYVVIQPTARQIF----------KCWDNDKFSAVIDALQARGYEVVL  220 (352)
T ss_pred             ---CCCCcceeecCHHHHHHHHHHHHhcCCC-CCeEEEecCCCccc----------cCCCHHHHHHHHHHHHHCCCeEEE
Confidence               2233456777777766666666655543 58999999999864          8999999999999998766 8999


Q ss_pred             eCCchh--HHHHHHHHhcCCCCceeecCCccccchh
Q 015881          357 IPHEKE--REGVEDVVGDDASIVFITTPGQVRMSSY  390 (399)
Q Consensus       357 iGgp~E--~e~aeeI~~~~~~~~~i~~~G~ls~~~~  390 (399)
                      +||++|  ++.+++|.+.+....++++.|+++|...
T Consensus       221 ~ggp~e~e~~~~~~i~~~~~~~~~~~l~g~~sL~el  256 (352)
T PRK10422        221 TSGPDKDDLACVNEIAQGCQTPPVTALAGKTTFPEL  256 (352)
T ss_pred             EcCCChHHHHHHHHHHHhcCCCccccccCCCCHHHH
Confidence            999865  4566888876544444778999988754

>PRK10916 ADP-heptose:LPS heptosyltransferase II; Provisional Back     alignment and domain information
>TIGR02201 heptsyl_trn_III lipopolysaccharide heptosyltransferase III, putative Back     alignment and domain information
>TIGR02195 heptsyl_trn_II lipopolysaccharide heptosyltransferase II Back     alignment and domain information
>PRK10964 ADP-heptose:LPS heptosyl transferase I; Provisional Back     alignment and domain information
>COG0859 RfaF ADP-heptose:LPS heptosyltransferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>TIGR02193 heptsyl_trn_I lipopolysaccharide heptosyltransferase I Back     alignment and domain information
>cd03789 GT1_LPS_heptosyltransferase Lipopolysaccharide heptosyltransferase is involved in the biosynthesis of lipooligosaccharide (LOS) Back     alignment and domain information
>PF01075 Glyco_transf_9: Glycosyltransferase family 9 (heptosyltransferase); InterPro: IPR002201 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>PRK10017 colanic acid biosynthesis protein; Provisional Back     alignment and domain information
>TIGR03568 NeuC_NnaA UDP-N-acetyl-D-glucosamine 2-epimerase, UDP-hydrolysing Back     alignment and domain information
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed Back     alignment and domain information
>COG1519 KdtA 3-deoxy-D-manno-octulosonic-acid transferase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed Back     alignment and domain information
>cd03807 GT1_WbnK_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length Back     alignment and domain information
>PF02684 LpxB: Lipid-A-disaccharide synthetase; InterPro: IPR003835 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information
>PRK01021 lpxB lipid-A-disaccharide synthase; Reviewed Back     alignment and domain information
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed Back     alignment and domain information
>TIGR01133 murG undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase Back     alignment and domain information
>PF13477 Glyco_trans_4_2: Glycosyl transferase 4-like Back     alignment and domain information
>COG0763 LpxB Lipid A disaccharide synthetase [Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PRK00726 murG undecaprenyldiphospho-muramoylpentapeptide beta-N- acetylglucosaminyltransferase; Provisional Back     alignment and domain information
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli Back     alignment and domain information
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides Back     alignment and domain information
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated Back     alignment and domain information
>cd03786 GT1_UDP-GlcNAc_2-Epimerase Bacterial members of the UDP-N-Acetylglucosamine (GlcNAc) 2-Epimerase family are known to catalyze the reversible interconversion of UDP-GlcNAc and UDP-N-acetylmannosamine (UDP-ManNAc) Back     alignment and domain information
>PRK13609 diacylglycerol glucosyltransferase; Provisional Back     alignment and domain information
>cd03808 GT1_cap1E_like This family is most closely related to the GT1 family of glycosyltransferases Back     alignment and domain information
>TIGR00661 MJ1255 conserved hypothetical protein Back     alignment and domain information
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A Back     alignment and domain information
>TIGR03609 S_layer_CsaB polysaccharide pyruvyl transferase CsaB Back     alignment and domain information
>cd03785 GT1_MurG MurG is an N-acetylglucosaminyltransferase, the last enzyme involved in the intracellular phase of peptidoglycan biosynthesis Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query399
2gt1_A326 Lipopolysaccharide heptosyltransferase-1; GT-B fol 4e-10
3tov_A349 Glycosyl transferase family 9; structural genomics 2e-08
1psw_A348 ADP-heptose LPS heptosyltransferase II; structural 3e-06
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-05
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A* Length = 326 Back     alignment and structure
 Score = 59.5 bits (145), Expect = 4e-10
 Identities = 35/247 (14%), Positives = 64/247 (25%), Gaps = 44/247 (17%)

Query: 137 LLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNV---------RWANVYDLDDDWPE 187
           L   PA+   +   PG+  D +      Q    +  V         RW   +        
Sbjct: 15  LHTLPALTDAQQAIPGIKFDWVVEEGFAQIPSWHAAVERVIPVAIRRWRKAWFSAPIK-- 72

Query: 188 PAEYTDILGVMKNRYYDMVLSTKLAGLGHAAFL-FMTTARDRVSYIYPNVNAAGAGLLLS 246
            AE       ++ + YD V+     GL  +A L        +    +       A L  +
Sbjct: 73  -AERKAFREALQAKNYDAVID--AQGLVKSAALVTRLAHGVKHGMDWQTAREPLASLFYN 129

Query: 247 ETFTAESMNLSERGYNMYEQMVDWLGRPFRSVPRHPVPPLRVSISRRLKEVVAEKYKNAG 306
                       +  +  E+  +   +      +                +      N  
Sbjct: 130 RKHHI------AKQQHAVERTRELFAKSLG-YSKPQTQGDY--------AIAQHFLTNLP 174

Query: 307 AEQGKYIVIHGIES-DSKASMQSRGDTDSLLPIQVWAEIANGLRE--FRPLFVIPHEKER 363
            + G+Y V     + D K             P + W E+   L +   R         E 
Sbjct: 175 TDAGEYAVFLHATTRDDK-----------HWPEEHWRELIGLLADSGIRIKLPWGAPHEE 223

Query: 364 EGVEDVV 370
           E  + + 
Sbjct: 224 ERAKRLA 230
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula} Length = 349 Back     alignment and structure
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7 Length = 348 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query399
3tov_A349 Glycosyl transferase family 9; structural genomics 100.0
2gt1_A326 Lipopolysaccharide heptosyltransferase-1; GT-B fol 100.0
1psw_A348 ADP-heptose LPS heptosyltransferase II; structural 100.0
3dzc_A396 UDP-N-acetylglucosamine 2-epimerase; structural ge 95.99
3otg_A412 CALG1; calicheamicin, TDP, structural genomics, PS 95.89
4fzr_A398 SSFS6; structural genomics, PSI-biology, protein s 95.01
3okp_A 394 GDP-mannose-dependent alpha-(1-6)-phosphatidylino 94.91
3rsc_A415 CALG2; TDP, enediyne, structural genomics, PSI-2, 94.64
2iyf_A 430 OLED, oleandomycin glycosyltransferase; antibiotic 94.6
3tsa_A391 SPNG, NDP-rhamnosyltransferase; glycosyltransferas 94.22
3oti_A398 CALG3; calicheamicin, TDP, structural genomics, PS 94.2
3ia7_A 402 CALG4; glycosysltransferase, calicheamicin, enediy 94.02
1f0k_A364 MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pe 93.25
2yjn_A 441 ERYCIII, glycosyltransferase; transferase, cytochr 92.78
2p6p_A384 Glycosyl transferase; X-RAY-diffraction,urdamycina 92.41
4amg_A400 Snogd; transferase, polyketide biosynthesis, GT1 f 92.39
1vgv_A384 UDP-N-acetylglucosamine 2-epimerase; structural ge 92.31
1v4v_A376 UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, t 92.09
2iya_A 424 OLEI, oleandomycin glycosyltransferase; carbohydra 91.98
1rrv_A 416 Glycosyltransferase GTFD; GT-B, glycosyltransferas 89.63
1iir_A 415 Glycosyltransferase GTFB; rossmann fold; 1.80A {Am 88.13
3c48_A 438 Predicted glycosyltransferases; retaining glycosyl 87.25
3s2u_A365 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape 86.23
3beo_A375 UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, a 85.09
3oy2_A 413 Glycosyltransferase B736L; rossmann fold, GDP-mann 84.67
3ot5_A403 UDP-N-acetylglucosamine 2-epimerase; structural ge 84.28
3h4t_A 404 Glycosyltransferase GTFA, glycosyltransferase; van 84.28
4hwg_A385 UDP-N-acetylglucosamine 2-epimerase; ssgcid, struc 83.4
>3tov_A Glycosyl transferase family 9; structural genomics, PSI-BIOL protein structure initiative, midwest center for structural genomics, MCSG; 2.98A {Veillonella parvula} Back     alignment and structure
Probab=100.00  E-value=2.8e-42  Score=343.47  Aligned_cols=246  Identities=14%  Similarity=0.142  Sum_probs=212.1

Q ss_pred             CccEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhcCCCCCEEEEecCCCCCCChHHHHHHHHHhhh
Q 015881          121 DVRRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKN  200 (399)
Q Consensus       121 ~v~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle~nP~ID~Vi~~d~k~~~~~~~~~~~l~~~LR~  200 (399)
                      ..||||||+.++|||+||++|++++||++||+++|+|++.+.++++++++|+||+||.++++....++..+++++++||+
T Consensus         7 ~~~~iLvi~~~~lGD~i~~~P~l~~L~~~~P~a~I~~l~~~~~~~l~~~~p~vd~vi~~~~~~~~~~~~~~~~l~~~Lr~   86 (349)
T 3tov_A            7 DYKRIVVTFLMHLGDVILTTPFLEVLRKAAPHSHITYVIDEKLQQVMEYNPNIDELIVVDKKGRHNSISGLNEVAREINA   86 (349)
T ss_dssp             TTCEEEEECCCCHHHHHTTHHHHHHHHHHCTTSEEEEEEEGGGGGGTSSCTTCSEEEEECCSSHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEecCcccHHHHHHHHHHHHHHHCCCCEEEEEECcchhHHHhcCCCccEEEEeCcccccccHHHHHHHHHHHhh
Confidence            46999999999999999999999999999999999999999999999999999999999976432345677889999999


Q ss_pred             CCC-cEEEEcCCCChHHHHHHHHhCCCeEEEecCCCccccccccccceeeccCcCCchhhHHHHHHHHHHHcCCCCCCCC
Q 015881          201 RYY-DMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFRSVP  279 (399)
Q Consensus       201 ~~Y-DlvIdl~~~~~rsAll~~LsgA~~RIGy~~~~~~~~~~~~~lt~~v~~~~~~~~~h~v~~yl~LL~~LGi~~~~~p  279 (399)
                      ++| |++||+|++ ++++++++++|++.|+||.     ..+..++|++.+.....  ..|.+++|+++++.||++.    
T Consensus        87 ~~y~D~vidl~~~-~rs~~l~~~~~a~~riG~~-----~~~~~~~~~~~~~~~~~--~~h~v~r~~~ll~~lg~~~----  154 (349)
T 3tov_A           87 KGKTDIVINLHPN-ERTSYLAWKIHAPITTGMS-----HFLFRPFMTKYTRLDRK--TRHAADMYINVLEQLGVTD----  154 (349)
T ss_dssp             HCCCCEEEECCCS-HHHHHHHHHHCCSEEEECC-----CTTTGGGCSEECCCCTT--TSCHHHHHHHHHHHTTCCC----
T ss_pred             CCCCeEEEECCCC-hHHHHHHHHhCCCeEEecC-----CCCccccccccccCCCC--CccHHHHHHHHHHHhCCCc----
Confidence            999 999999999 9999999999999999998     44556788887765432  2689999999999999841    


Q ss_pred             CCCCCCceeecCHHHHHHHHHHHHHhCCC-CCCeEEEEcCCCCccccccCCCCCCCCCCHHHHHHHHHHhhhCC-CEEEe
Q 015881          280 RHPVPPLRVSISRRLKEVVAEKYKNAGAE-QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVI  357 (399)
Q Consensus       280 ~~~~p~l~i~is~e~~~~a~~~l~~~gl~-~~~~IvIhPgas~~~~~~k~rg~~~KrWP~e~faeLa~~L~~~~-~Vvli  357 (399)
                       .....+.+.+++++++.+++++.+.|+. .+++|+||||+++..          |+||.|+|++|++.|.+++ +||++
T Consensus       155 -~~~~~~~l~~~~~~~~~~~~~l~~~g~~~~~~~i~i~pga~~~~----------k~wp~~~~~~l~~~l~~~g~~vvl~  223 (349)
T 3tov_A          155 -TSNSGLHIEICEEWRCQAQEFYSSHGLTDTDILIGFNIGSAVPE----------KRWPAERFAHVADYFGRLGYKTVFF  223 (349)
T ss_dssp             -CCCCCCCCCCCHHHHHHHHHHHHHTTCCTTCCEEEEECCCSSGG----------GCCCHHHHHHHHHHHHHHTCEEEEC
T ss_pred             -cCCCceeeeCCHHHHHHHHHHHHHcCCCCCCCEEEEeCCCCCcc----------CCCCHHHHHHHHHHHHhCCCeEEEE
Confidence             1223467788888888888889888876 468999999999875          8899999999999998766 88899


Q ss_pred             CCchhHHHHHHHHhcCCCCceeecCCccccchh
Q 015881          358 PHEKEREGVEDVVGDDASIVFITTPGQVRMSSY  390 (399)
Q Consensus       358 Ggp~E~e~aeeI~~~~~~~~~i~~~G~ls~~~~  390 (399)
                      |+++|++.+++|.+..+..+ +++.|++++...
T Consensus       224 g~~~e~~~~~~i~~~~~~~~-~~l~g~~sl~e~  255 (349)
T 3tov_A          224 GGPMDLEMVQPVVEQMETKP-IVATGKFQLGPL  255 (349)
T ss_dssp             CCTTTHHHHHHHHHTCSSCC-EECTTCCCHHHH
T ss_pred             eCcchHHHHHHHHHhccccc-EEeeCCCCHHHH
Confidence            99999999999998876544 778899888754
>2gt1_A Lipopolysaccharide heptosyltransferase-1; GT-B fold; 1.90A {Escherichia coli UTI89} PDB: 2h1f_A* 2h1h_A* Back     alignment and structure
>1psw_A ADP-heptose LPS heptosyltransferase II; structural genomics, NYSGXRC, LPS biosynthetic pathway, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.87.1.7 Back     alignment and structure
>3dzc_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, in diseases, isomerase, center for structural genomics of INFE diseases, csgid; 2.35A {Vibrio cholerae} Back     alignment and structure
>3otg_A CALG1; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD; 2.08A {Micromonospora echinospora} PDB: 3oth_A* Back     alignment and structure
>4fzr_A SSFS6; structural genomics, PSI-biology, protein structure initiati enzyme discovery for natural product biosynthesis, natPro; 2.40A {Streptomyces SP} PDB: 4g2t_A* Back     alignment and structure
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A* Back     alignment and structure
>3rsc_A CALG2; TDP, enediyne, structural genomics, PSI-2, protein structure initiative, center for eukaryotic structural genomics; HET: TYD C0T; 2.19A {Micromonospora echinospora} PDB: 3iaa_A* Back     alignment and structure
>2iyf_A OLED, oleandomycin glycosyltransferase; antibiotic resistance, glycosylation, enzyme, macrolide, carbohydrate; HET: ERY UDP; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>3tsa_A SPNG, NDP-rhamnosyltransferase; glycosyltransferase; HET: GLC; 1.70A {Saccharopolyspora spinosa} PDB: 3uyk_A* 3uyl_A* Back     alignment and structure
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A* Back     alignment and structure
>3ia7_A CALG4; glycosysltransferase, calicheamicin, enediyne, transf; 1.91A {Micromonospora echinospora} Back     alignment and structure
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A* Back     alignment and structure
>2yjn_A ERYCIII, glycosyltransferase; transferase, cytochrome P450; 3.09A {Saccharopolyspora erythraea} Back     alignment and structure
>2p6p_A Glycosyl transferase; X-RAY-diffraction,urdamycina-biosynthesis; 1.88A {Streptomyces fradiae} Back     alignment and structure
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A* Back     alignment and structure
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A* Back     alignment and structure
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3 Back     alignment and structure
>2iya_A OLEI, oleandomycin glycosyltransferase; carbohydrate, glycosylation, enzyme, macrolide; HET: UDP ZIO; 1.7A {Streptomyces antibioticus} Back     alignment and structure
>1rrv_A Glycosyltransferase GTFD; GT-B, glycosyltransferase, rossmann fold, glycopeptide, VACO antibiotic, transferase-antibiotic complex; HET: OMZ GHP OMY 3FG TYD BGC; 2.00A {Amycolatopsis orientalis} SCOP: c.87.1.5 Back     alignment and structure
>1iir_A Glycosyltransferase GTFB; rossmann fold; 1.80A {Amycolatopsis orientalis} SCOP: c.87.1.5 Back     alignment and structure
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A* Back     alignment and structure
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa} Back     alignment and structure
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A Back     alignment and structure
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A* Back     alignment and structure
>3ot5_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, center for structural genomics of infec diseases, csgid, alpha beta; HET: PGE; 2.20A {Listeria monocytogenes} Back     alignment and structure
>3h4t_A Glycosyltransferase GTFA, glycosyltransferase; vancomycin, teicoplanin, ORF1, natural products, antibiotic; HET: UDP; 1.15A {Amycolatopsis orientalis} SCOP: c.87.1.5 PDB: 3h4i_A* 1pn3_A* 1pnv_A* Back     alignment and structure
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 399
d1pswa_348 c.87.1.7 (A:) ADP-heptose LPS heptosyltransferase 7e-05
>d1pswa_ c.87.1.7 (A:) ADP-heptose LPS heptosyltransferase II {Escherichia coli [TaxId: 562]} Length = 348 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: ADP-heptose LPS heptosyltransferase II
domain: ADP-heptose LPS heptosyltransferase II
species: Escherichia coli [TaxId: 562]

 Score = 42.1 bits (97), Expect = 7e-05
 Identities = 16/70 (22%), Positives = 27/70 (38%)

Query: 137 LLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILG 196
           ++     + L+ RYP  +IDV+A A  +        V  A    L     E  E   +  
Sbjct: 15  MMSQSLYRTLQARYPQAIIDVMAPAWCRPLLSRMPEVNEAIPMPLGHGALEIGERRKLGH 74

Query: 197 VMKNRYYDMV 206
            ++ + YD  
Sbjct: 75  SLREKRYDRA 84

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query399
d1pswa_348 ADP-heptose LPS heptosyltransferase II {Escherichi 100.0
>d1pswa_ c.87.1.7 (A:) ADP-heptose LPS heptosyltransferase II {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: UDP-Glycosyltransferase/glycogen phosphorylase
superfamily: UDP-Glycosyltransferase/glycogen phosphorylase
family: ADP-heptose LPS heptosyltransferase II
domain: ADP-heptose LPS heptosyltransferase II
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=1.7e-34  Score=279.38  Aligned_cols=248  Identities=15%  Similarity=0.098  Sum_probs=189.9

Q ss_pred             cEEEEEcCCChhHHHhHHHHHHHHHHHCCCcEEEEEEcCCchHhhhcCCCCCEEEEecCCCCCCChHHHHHHHHHhhhCC
Q 015881          123 RRCCCIISGGVYENLLFFPAIQLLKDRYPGVLIDVIASARGKQTFELNKNVRWANVYDLDDDWPEPAEYTDILGVMKNRY  202 (399)
Q Consensus       123 ~rILIIr~~~IGDvVLttPalraLK~~yP~A~IdvLv~~~~~~lle~nP~ID~Vi~~d~k~~~~~~~~~~~l~~~LR~~~  202 (399)
                      ||||||++++|||+|+++|++++||++||+++|||++.+.++++++.+|+||+|+.++.+.....+..+.++++.||+++
T Consensus         1 MkILii~~~~iGD~il~~p~i~~Lk~~~P~~~I~~l~~~~~~~l~~~~p~id~v~~~~~~~~~~~~~~~~~l~~~l~~~~   80 (348)
T d1pswa_           1 MKILVIGPSWVGDMMMSQSLYRTLQARYPQAIIDVMAPAWCRPLLSRMPEVNEAIPMPLGHGALEIGERRKLGHSLREKR   80 (348)
T ss_dssp             CEEEEECCSSHHHHHHHHHHHHHHHHHSTTCEEEEEECGGGHHHHTTCTTEEEEEEC-------CHHHHHHHHHHTTTTT
T ss_pred             CeEEEEcCCChHHHHHHHHHHHHHHHHCCCCEEEEEEChhHHHHHhhCCCcCEEEEecCccccchhhhhhhHHHHhhhcc
Confidence            89999999999999999999999999999999999999999999999999999999987665566778889999999999


Q ss_pred             CcEEEEcCCCChHHHHHHHHhCCCeEEEecCCCccccccccccceeeccCcCCchhhHHHHHHHHHHHcCCCCC--CCCC
Q 015881          203 YDMVLSTKLAGLGHAAFLFMTTARDRVSYIYPNVNAAGAGLLLSETFTAESMNLSERGYNMYEQMVDWLGRPFR--SVPR  280 (399)
Q Consensus       203 YDlvIdl~~~~~rsAll~~LsgA~~RIGy~~~~~~~~~~~~~lt~~v~~~~~~~~~h~v~~yl~LL~~LGi~~~--~~p~  280 (399)
                      ||++|+++++ +++++++++++++.|+|+.     ...+..+++........ ...|..++|+.++..++....  ..+ 
T Consensus        81 ~D~~i~~~~~-~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-  152 (348)
T d1pswa_          81 YDRAYVLPNS-FKSALVPLFAGIPHRTGWR-----GEMRYGLLNDVRVLDKE-AWPLMVERYIALAYDKGIMRTAQDLP-  152 (348)
T ss_dssp             CSEEEECSCC-SGGGHHHHHTTCSEEEEEC-----TTTCTTTCTEEECCCTT-TCCSHHHHHHHTTSCGGGCSSGGGSC-
T ss_pred             cceEeecccc-cchhhHHHhhccccccccc-----ccccccccccccccccc-cchhHHHHHHHHHHhhhccccccccc-
Confidence            9999999999 9999999999999999997     22222334433322221 124677888887765554211  111 


Q ss_pred             CCCCCceeecCHHHHHHHHHHHHHhCCC-CCCeEEEEcCCCCccccccCCCCCCCCCCHHHHHHHHHHhhhCC-CEEEeC
Q 015881          281 HPVPPLRVSISRRLKEVVAEKYKNAGAE-QGKYIVIHGIESDSKASMQSRGDTDSLLPIQVWAEIANGLREFR-PLFVIP  358 (399)
Q Consensus       281 ~~~p~l~i~is~e~~~~a~~~l~~~gl~-~~~~IvIhPgas~~~~~~k~rg~~~KrWP~e~faeLa~~L~~~~-~VvliG  358 (399)
                      .....+...++++++.....   +.++. .+++|++|+|+++..         .|+||.++|++|++.|.+++ .|+++|
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~---------~k~wp~~~~~~L~~~l~~~~~~ivl~g  220 (348)
T d1pswa_         153 QPLLWPQLQVSEGEKSYTCN---QFSLSSERPMIGFCPGAEFGP---------AKRWPHYHYAELAKQLIDEGYQVVLFG  220 (348)
T ss_dssp             SSCCCCCCCCCHHHHHHHHH---HTTCCSSSCEEEEECCCTTCG---------GGSCCHHHHHHHHHHHHHTTCEEEECC
T ss_pred             cccccccccCCHHHHHHHHH---HhccccCCCeEEeccccchhh---------ccccchHHHhhhHHHHhhcCCcccccc
Confidence            11223355667777665543   34443 467999999987653         48899999999999999877 899999


Q ss_pred             CchhHHHHHHHHhcCC---CCceeecCCccccchh
Q 015881          359 HEKEREGVEDVVGDDA---SIVFITTPGQVRMSSY  390 (399)
Q Consensus       359 gp~E~e~aeeI~~~~~---~~~~i~~~G~ls~~~~  390 (399)
                      +++|++.++++.+.+.   ...++++.|++++..+
T Consensus       221 ~~~e~~~~~~~~~~~~~~~~~~~~~l~g~~sl~el  255 (348)
T d1pswa_         221 SAKDHEAGNEILAALNTEQQAWCRNLAGETQLDQA  255 (348)
T ss_dssp             CGGGHHHHHHHHTTSCHHHHTTEEECTTTSCHHHH
T ss_pred             ccchHHHHHHHHHhhhcccccccccccCCccHHHH
Confidence            9999999999988653   2345889999988764