Citrus Sinensis ID: 015894

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
Protein Sequence
MQKAKSLDKFSRSALSPLMSNLKESLGVAKFASVGVNSLKGGNLDYTREKTISRKQVRNVSCTNLNGYLSKAHYSSSCTDNSTKDLTSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANASKL
Secondary Structure (PSIPRED)
ccHHHHHHHcccccccHHHHcccccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccEEEEEEccccccccccccccHHHHHHHHHHHHHccccEEEEccccccccccccccHHHHHHHcccccccEEEEEcccHHHHHHHHHccccEEEEEEcccHHHHHHcccccHHHHHHHHHHHHHHHHHccccEEEEEEcEEcccccccccHHHHHHHHHHHHHccccEEEcccccccccHHHHHHHHHHHHHHccccccEEEccccHHHHHHHHHHHHHHcccEEEEcccccccccccccccccHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHccHHcccccHccccccccccccccccEccccccccccccccccccccEEccccccHHHHHHHcccccccccHHHHHHHHHHccccccEEEEEEEccccccccccccccHHHHHHHHHHHHHccccEEEEEEccccccccccccHHHHHHHHHcccccEEEEcccccHHHHHHHHccccEEEEEEccHHHHcHccccccHHHHHHHHHHHHHHHHHccccEEEEEEEEEcccccccccHHHHHHHHHHHHHcccEEEEcccccccccHHHHHHHHHHHHHHccHHHHEEHcccHHHHHHHHHHHHHHcccEEEEccHcccccccccccccccccHHHHHHHHccccccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccc
Coil and Loop (DISEMBL)
mqkaksldkfsrSALSPLMSNLKESLGVAKFASVGVnslkggnldytrEKTISRKQVRNvsctnlngylskahysssctdnstkDLTSkllgrvpgfVKIVevgprdglqneknivPAVVKVELIKLLVSSGLAvveatsfvspkwvpqlaDAKDVMAAIQNvegarfpvltpnlKGFEAAVAAGAKEVAIFASAsesfsksninctiedslIRYRDVALAARelsipvrgylscvvgcpvegmvppskvaYVSKQlydmgcseislgdtigvgtpgtvIPMLEAVLdavpvdklaVHFHDTYGQALSNILASLQMGIstvdssvsglggcpyakgasgnvatEDVVYMLNGlgvrtnvdIRKLMIAGDfickhlgrtsgskTAIALSKTstanaskl
Flexible Loop (DISEMBL)
mqkaksldkfsrsaLSPLMSNLKESLGVAKFAsvgvnslkggnldytrektisrkqvrnvsCTNLNGYLSKAHYSSSCTDNSTKDLTSKLLGRVPGFVKIVevgprdglqnekniVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFAsasesfsksninctiedsLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKhlgrtsgsktaialsktstanaskl
Low Complexity Region (SEG)
MQKAKSLDKFSRSALSPLMSNLKESLGVAKFASVGVNSLKGGNLDYTREKTISRKQVRNVSCTNLNGYLSKAHYSSSCTDNSTKDLTSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNLkgfeaavaagakevaifaSASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANASKL
Disordered region (IsUnstruct)
*************************LGVAKFASVGVNSLKGGNLDYTREKTISRKQVRNVSCTNLNGYLSKAHYSSSCT****KDLTSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGR*********************
Disordered Region (DISOPRED)
**************************GVAKF****************REKTISRKQVRNVSCTNLNGYLS***********************VPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIAL***********
Disordered Region (DISEMBL)
**********SRSALSPLMSNLKESLGVAKFASVGVNSLKGGNLDYTREKTISRKQVRNVSCTNLNGYLSKAH**********KDLTSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALS**********
Disordered Region (DISPRO)
*************ALSPLMSNLKESLGVAKFASVGVNSLKGGNLDYT**KTISRKQVRNVSCTNLNGYLSKAHYSSSCTDNSTKDLTSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGR*********************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MQKAKSLDKFSRSALSPLMSNLKESLGVAKFASVGVNSLKGGNLDYTREKTISRKQVRNVSCTNLNGYLSKAHYSSSCTDNSTKDLTSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANASKL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	398	2.2.26 [Sep-21-2011]
O81027	468	Hydroxymethylglutaryl-CoA	yes	no	0.886	0.754	0.713	1e-147
P97519	325	Hydroxymethylglutaryl-CoA	yes	no	0.751	0.92	0.662	1e-114
Q29448	325	Hydroxymethylglutaryl-CoA	yes	no	0.751	0.92	0.658	1e-113
Q8JZS7	343	3-hydroxymethyl-3-methylg	yes	no	0.748	0.868	0.645	1e-113
P38060	325	Hydroxymethylglutaryl-CoA	no	no	0.776	0.950	0.634	1e-113
Q8TB92	370	3-hydroxymethyl-3-methylg	no	no	0.751	0.808	0.64	1e-112
P35915	298	Hydroxymethylglutaryl-CoA	yes	no	0.741	0.989	0.654	1e-112
D4A5C3	343	3-hydroxymethyl-3-methylg	no	no	0.743	0.862	0.635	1e-112
Q5R9E1	325	Hydroxymethylglutaryl-CoA	yes	no	0.773	0.947	0.626	1e-112
P35914	325	Hydroxymethylglutaryl-CoA	no	no	0.773	0.947	0.620	1e-111

>sp|O81027|HMGCL_ARATH Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Arabidopsis thaliana GN=HMGCL PE=1 SV=2

 Score =  520 bits (1339), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 259/363 (71%), Positives = 302/363 (83%), Gaps = 10/363 (2%)

Query: 46  YTREKTISRKQVRNVS----CTNLNGYLSKAH------YSSSCTDNSTKDLTSKLLGRVP 95
           +TR+ +      RN+S     + ++G L ++       YS+   +N T  +++K+   +P
Sbjct: 106 HTRKLSEGEHMFRNISFAGRTSTVSGTLRESKSFKEQKYSTFSNENGTSHISNKISKGIP 165

Query: 96  GFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKD 155
            FVKIVEVGPRDGLQNEKNIVP  VKVELI+ LVSSGL VVEATSFVSPKWVPQLADAKD
Sbjct: 166 KFVKIVEVGPRDGLQNEKNIVPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKD 225

Query: 156 VMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRY 215
           VM A+  ++GAR PVLTPNLKGF+AAV+AGAKEVAIFASASESFS SNINCTIE+SL+RY
Sbjct: 226 VMDAVNTLDGARLPVLTPNLKGFQAAVSAGAKEVAIFASASESFSLSNINCTIEESLLRY 285

Query: 216 RDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGT 275
           R VA AA+E S+PVRGY+SCVVGCPVEG V PSKVAYV K+LYDMGC EISLGDTIG+GT
Sbjct: 286 RVVATAAKEHSVPVRGYVSCVVGCPVEGPVLPSKVAYVVKELYDMGCFEISLGDTIGIGT 345

Query: 276 PGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAK 335
           PG+V+PMLEAV+  VP DKLAVHFHDTYGQAL+NIL SLQMGIS VDSS++GLGGCPYAK
Sbjct: 346 PGSVVPMLEAVMAVVPADKLAVHFHDTYGQALANILVSLQMGISIVDSSIAGLGGCPYAK 405

Query: 336 GASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANA 395
           GASGNVATEDVVYMLNGLGV TNVD+ KL+ AGDFI KHLGR +GSK A+AL++  TA+A
Sbjct: 406 GASGNVATEDVVYMLNGLGVHTNVDLGKLIAAGDFISKHLGRPNGSKAAVALNRRITADA 465

Query: 396 SKL 398
           SK+
Sbjct: 466 SKI 468

Involved in the catabolism of branched amino acids such as leucine.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 1EC: .EC: 3EC: .EC: 4

>sp|P97519|HMGCL_RAT Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Rattus norvegicus GN=Hmgcl PE=2 SV=1

 Score =  411 bits (1056), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 198/299 (66%), Positives = 237/299 (79%)

Query: 91  LGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQL 150
           +G +P  VKIVEVGPRDGLQNEK+IVP  VK++LI +L  +GL V+EATSFVSPKWVPQ+
Sbjct: 26  MGTLPKRVKIVEVGPRDGLQNEKSIVPTPVKIKLIDMLSEAGLPVIEATSFVSPKWVPQM 85

Query: 151 ADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIED 210
           AD  DV+  IQ   G  +PVLTPN+KGFE AVAAGAKEV+IF +ASE F++ N+NC+IE+
Sbjct: 86  ADHSDVLKGIQKFPGINYPVLTPNMKGFEEAVAAGAKEVSIFGAASELFTRKNVNCSIEE 145

Query: 211 SLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDT 270
           S  R+  V  AAR  SI VRGY+SC +GCP EG V P+KVA V+K+LY MGC EISLGDT
Sbjct: 146 SFQRFDGVMQAARAASISVRGYVSCALGCPYEGKVSPAKVAEVAKKLYSMGCYEISLGDT 205

Query: 271 IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGG 330
           IGVGTPG +  ML AVL  VPV  LAVH HDTYGQAL+N L +LQMG+S VDSSV+GLGG
Sbjct: 206 IGVGTPGLMKDMLTAVLHEVPVAALAVHCHDTYGQALANTLVALQMGVSVVDSSVAGLGG 265

Query: 331 CPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSK 389
           CPYAKGASGN+ATED+VYML GLG+ T V+++KL+ AGDFIC+ L R + SK A A  K
Sbjct: 266 CPYAKGASGNLATEDLVYMLTGLGIHTGVNLQKLLEAGDFICQALNRKTSSKVAQATCK 324

Key enzyme in ketone body formation (ketogenesis). Terminal step in leucine catabolism.

Rattus norvegicus (taxid: 10116)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

>sp|Q29448|HMGCL_BOVIN Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Bos taurus GN=HMGCL PE=2 SV=2

 Score =  409 bits (1050), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 197/299 (65%), Positives = 237/299 (79%)

Query: 91  LGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQL 150
           +G  P  VKIVEVGPRDGLQNEKNIVP  VK++LI +L  +GL VVEATSFVSPKWVPQ+
Sbjct: 26  VGTFPKQVKIVEVGPRDGLQNEKNIVPTPVKIKLIDMLSEAGLPVVEATSFVSPKWVPQM 85

Query: 151 ADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIED 210
           AD  +V+  IQ   G  +PVLTPN KGF+AAVAAGAKEVAIF +ASE F+K NINC+I++
Sbjct: 86  ADHAEVLKGIQKFPGVNYPVLTPNFKGFQAAVAAGAKEVAIFGAASELFTKKNINCSIDE 145

Query: 211 SLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDT 270
           SL R+ ++  AAR   I VRGY+SCV+GCP EG + P+KVA V+K+LY MGC EISLGDT
Sbjct: 146 SLQRFDEILKAARAAGISVRGYVSCVLGCPYEGKISPAKVAEVTKKLYSMGCYEISLGDT 205

Query: 271 IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGG 330
           IGVGTPG +  ML AVL  VPV  LAVH HDTYGQAL+N L +LQMG+S +DSSV+GLGG
Sbjct: 206 IGVGTPGAMKDMLSAVLQEVPVTALAVHCHDTYGQALANTLTALQMGVSVMDSSVAGLGG 265

Query: 331 CPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSK 389
           CPYA+GASGN+ATED+VYML GLG+ T V+++KL+ AG FIC+ L R + SK A A  K
Sbjct: 266 CPYAQGASGNLATEDLVYMLAGLGIHTGVNLQKLLEAGAFICQALNRRTNSKVAQATCK 324

Key enzyme in ketogenesis (ketone body formation). Terminal step in leucine catabolism.

Bos taurus (taxid: 9913)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

>sp|Q8JZS7|HMGC2_MOUSE 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic OS=Mus musculus GN=Hmgcll1 PE=2 SV=1

 Score =  408 bits (1048), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 193/299 (64%), Positives = 242/299 (80%), Gaps = 1/299 (0%)

Query: 88  SKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWV 147
           S+L G +P +VKIVEVGPRDGLQNEK IVP  +K+ELI  L  +GL+V+E TSFVS +WV
Sbjct: 39  SQLPG-LPEYVKIVEVGPRDGLQNEKVIVPTDIKIELINQLSQTGLSVIEVTSFVSSRWV 97

Query: 148 PQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCT 207
           PQ+AD  +VM  I+   G R+PVLTPNL+GF+ AVAAGA E+A+F +ASESFSK NINC+
Sbjct: 98  PQMADHAEVMRGIRQYPGVRYPVLTPNLQGFQHAVAAGATEIAVFGAASESFSKKNINCS 157

Query: 208 IEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL 267
           IE+S+ R+++V  +AR + IPVRGY+SC +GCP EG + P KV  VSK+LY MGC EISL
Sbjct: 158 IEESMGRFQEVISSARHMDIPVRGYVSCALGCPYEGSITPQKVTEVSKRLYGMGCYEISL 217

Query: 268 GDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSG 327
           GDTIGVGTPG++  MLE+V+  +P   LAVH HDTYGQAL+NIL +LQMGI+ VDS+VSG
Sbjct: 218 GDTIGVGTPGSMKMMLESVMKEIPPGALAVHCHDTYGQALANILTALQMGINVVDSAVSG 277

Query: 328 LGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIA 386
           LGGCPYAKGASGNVATED++YMLNG+G+ T VD+ K+M AG+FICK + +T+ SK A A
Sbjct: 278 LGGCPYAKGASGNVATEDLIYMLNGMGLNTGVDLYKVMEAGEFICKAVNKTTNSKVAQA 336

Involved in the catabolism of branched amino acids such as leucine.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

>sp|P38060|HMGCL_MOUSE Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Mus musculus GN=Hmgcl PE=1 SV=2

 Score =  407 bits (1047), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 196/309 (63%), Positives = 240/309 (77%)

Query: 81  NSTKDLTSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATS 140
            S + +++  +G +P  VKIVEVGPRDGLQNEK+IVP  VK+ LI +L  +GL V+EATS
Sbjct: 16  TSLRAVSTSSMGTLPKQVKIVEVGPRDGLQNEKSIVPTPVKIRLIDMLSEAGLPVIEATS 75

Query: 141 FVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFS 200
           FVSPKWVPQ+AD  DV+  IQ   G  +PVLTPN+KGFE AVAAGAKEV++F + SE F+
Sbjct: 76  FVSPKWVPQMADHSDVLKGIQKFPGINYPVLTPNMKGFEEAVAAGAKEVSVFGAVSELFT 135

Query: 201 KSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM 260
           + N NC+IE+S  R+  V  AA+  SI VRGY+SC +GCP EG V P+KVA V+K+LY M
Sbjct: 136 RKNANCSIEESFQRFAGVMQAAQAASISVRGYVSCALGCPYEGKVSPAKVAEVAKKLYSM 195

Query: 261 GCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGIST 320
           GC EISLGDTIGVGTPG +  ML AV+  VPV  LAVH HDTYGQAL+N L +LQMG+S 
Sbjct: 196 GCYEISLGDTIGVGTPGLMKDMLTAVMHEVPVTALAVHCHDTYGQALANTLVALQMGVSV 255

Query: 321 VDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSG 380
           VDSSV+GLGGCPYAKGASGN+ATED+VYMLNGLG+ T V+++KL+ AGDFIC+ L R + 
Sbjct: 256 VDSSVAGLGGCPYAKGASGNLATEDLVYMLNGLGIHTGVNLQKLLEAGDFICQALNRKTS 315

Query: 381 SKTAIALSK 389
           SK A A  K
Sbjct: 316 SKVAQATCK 324

Key enzyme in ketogenesis (ketone body formation). Terminal step in leucine catabolism.

Mus musculus (taxid: 10090)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

>sp|Q8TB92|HMGC2_HUMAN 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic OS=Homo sapiens GN=HMGCLL1 PE=1 SV=3

 Score =  406 bits (1043), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 192/300 (64%), Positives = 239/300 (79%), Gaps = 1/300 (0%)

Query: 87  TSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKW 146
           TS+L G +P FVKIVEVGPRDGLQNEK IVP  +K+E I  L  +GL+V+E TSFVS +W
Sbjct: 68  TSQLSG-LPEFVKIVEVGPRDGLQNEKVIVPTDIKIEFINRLSQTGLSVIEVTSFVSSRW 126

Query: 147 VPQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINC 206
           VPQ+AD  +VM  I    G R+PVLTPNL+GF  AVAAGA E+++F +ASESFSK NINC
Sbjct: 127 VPQMADHTEVMKGIHQYPGVRYPVLTPNLQGFHHAVAAGATEISVFGAASESFSKKNINC 186

Query: 207 TIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEIS 266
           +IE+S+ ++ +V  +AR ++IP RGY+SC +GCP EG + P KV  VSK+LY MGC EIS
Sbjct: 187 SIEESMGKFEEVVKSARHMNIPARGYVSCALGCPYEGSITPQKVTEVSKRLYGMGCYEIS 246

Query: 267 LGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVS 326
           LGDTIGVGTPG++  MLE+V+  +P   LAVH HDTYGQAL+NIL +LQMGI+ VDS+VS
Sbjct: 247 LGDTIGVGTPGSMKRMLESVMKEIPPGALAVHCHDTYGQALANILTALQMGINVVDSAVS 306

Query: 327 GLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIA 386
           GLGGCPYAKGASGNVATED++YMLNGLG+ T V++ K+M AGDFICK + +T+ SK A A
Sbjct: 307 GLGGCPYAKGASGNVATEDLIYMLNGLGLNTGVNLYKVMEAGDFICKAVNKTTNSKVAQA 366

Involved in the catabolism of branched amino acids such as leucine.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

>sp|P35915|HMGCL_CHICK Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Gallus gallus GN=HMGCL PE=1 SV=1

 Score =  405 bits (1041), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 193/295 (65%), Positives = 236/295 (80%)

Query: 95  PGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAK 154
           P  VK+VEVGPRDGLQNEK++VP  VK+ LI +L  +GL V+EATSFVSP+WVPQ+AD  
Sbjct: 3   PQRVKVVEVGPRDGLQNEKSVVPTPVKIRLIDMLSETGLPVIEATSFVSPRWVPQMADHA 62

Query: 155 DVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIR 214
           +VM  I  + G  +PVLTPNLKGF+AAVAAGAKEV+IF +ASE F+K NINC+IE+SL R
Sbjct: 63  EVMQGINKLPGVSYPVLTPNLKGFQAAVAAGAKEVSIFGAASELFTKKNINCSIEESLER 122

Query: 215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVG 274
           + +V  AAR  SIPVRGY+SCV+GCP EG +  +KVA VSK++Y MGC EISLGD IG+G
Sbjct: 123 FSEVMNAARAASIPVRGYVSCVLGCPYEGNISAAKVAEVSKKMYSMGCYEISLGDRIGIG 182

Query: 275 TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYA 334
           TPG++  ML AV+  VPV  LAVH HDTYGQAL+NIL +LQMG+S VD+SV+GLGGCPYA
Sbjct: 183 TPGSMKEMLAAVMKEVPVGALAVHCHDTYGQALANILVALQMGVSVVDASVAGLGGCPYA 242

Query: 335 KGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSK 389
           +GASGNVATED+VYMLNGLG+ T VD++KLM  G FIC  L R + SK + A  +
Sbjct: 243 QGASGNVATEDLVYMLNGLGIHTGVDLQKLMDTGTFICNALNRRTNSKVSQAACR 297

Key enzyme in ketogenesis (ketone body formation). Terminal step in leucine catabolism.

Gallus gallus (taxid: 9031)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

>sp|D4A5C3|HMGC2_RAT 3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic OS=Rattus norvegicus GN=Hmgcll1 PE=1 SV=1

 Score =  405 bits (1040), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 188/296 (63%), Positives = 234/296 (79%)

Query: 91  LGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQL 150
           L  +P +VKIVEVGPRDGLQNEK IVP  +K+E I  L  +GL+V+E TSFVS +WVPQ+
Sbjct: 41  LSGLPEYVKIVEVGPRDGLQNEKVIVPTDIKIEFINQLSQTGLSVIEVTSFVSSRWVPQM 100

Query: 151 ADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIED 210
           AD  +VM  I    G R+PVL PNL+G + AVAAGA E+A+F +ASESFSK NINC+IE+
Sbjct: 101 ADHAEVMGGIHQYPGVRYPVLVPNLQGLQHAVAAGATEIAVFGAASESFSKKNINCSIEE 160

Query: 211 SLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDT 270
           S+ R+  V  +AR ++IPVRGY+SC +GCP EG + P KV  VSK+LY MGC EISLGDT
Sbjct: 161 SMGRFEQVISSARHMNIPVRGYVSCALGCPYEGSIMPQKVTEVSKRLYSMGCYEISLGDT 220

Query: 271 IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGG 330
           +GVGTPG++  MLE+V+  +P   LAVH HDTYGQAL+NIL +LQMGI+ VDS+VSGLGG
Sbjct: 221 VGVGTPGSMKTMLESVMKEIPPGALAVHCHDTYGQALANILTALQMGINVVDSAVSGLGG 280

Query: 331 CPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIA 386
           CPYAKGASGNVATED++YMLNG+G+ T VD+ K+M AGDFICK + +T+ SK A A
Sbjct: 281 CPYAKGASGNVATEDLIYMLNGMGLNTGVDLHKVMEAGDFICKAVNKTTNSKVAQA 336

Non-mitochondrial 3-hydroxymethyl-3-methylglutaryl-CoA lyase that catalyzes a cation-dependent cleavage of (S)-3-hydroxy-3-methylglutaryl-CoA into acetyl-CoA and acetoacetate, a key step in ketogenesis, the products of which support energy production in nonhepatic animal tissues.

Rattus norvegicus (taxid: 10116)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

>sp|Q5R9E1|HMGCL_PONAB Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Pongo abelii GN=HMGCL PE=2 SV=1

 Score =  404 bits (1037), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 193/308 (62%), Positives = 241/308 (78%)

Query: 82  STKDLTSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSF 141
           S + +++  +G +P  VKIVEVGPRDGLQNEKNIV   VK++LI +L  +GL+V+E TSF
Sbjct: 17  SLRAVSTSSMGTLPKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSF 76

Query: 142 VSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSK 201
           VSPKWVPQ+ D  +V+  IQ   G  +PVLTPNLKGFEAAVAAGAKEVAIF +ASE F+K
Sbjct: 77  VSPKWVPQMGDHTEVLKGIQKFPGINYPVLTPNLKGFEAAVAAGAKEVAIFGAASELFTK 136

Query: 202 SNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMG 261
            NINC+IE+S  R+  +  AA+  +I VRGY+SC +GCP EG + P+KVA V+K+LY MG
Sbjct: 137 KNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKLYSMG 196

Query: 262 CSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV 321
           C EISLGDTIGVGTPG +  ML AV+  VP+  LAVH HDTYGQAL+N L +LQMG+S V
Sbjct: 197 CYEISLGDTIGVGTPGIMKGMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQMGVSVV 256

Query: 322 DSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGS 381
           DSSV+GLGGCPYA+GASGN+ATED+VYML GLG+ T V+++KL+ AG+FIC+ L R + S
Sbjct: 257 DSSVAGLGGCPYAQGASGNLATEDLVYMLEGLGIHTGVNLQKLLEAGNFICQALNRKTSS 316

Query: 382 KTAIALSK 389
           K A A  K
Sbjct: 317 KVAQATCK 324

Key enzyme in ketogenesis (ketone body formation). Terminal step in leucine catabolism.

Pongo abelii (taxid: 9601)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

>sp|P35914|HMGCL_HUMAN Hydroxymethylglutaryl-CoA lyase, mitochondrial OS=Homo sapiens GN=HMGCL PE=1 SV=2

 Score =  400 bits (1029), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 191/308 (62%), Positives = 239/308 (77%)

Query: 82  STKDLTSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSF 141
           S + +++  +G +P  VKIVEVGPRDGLQNEKNIV   VK++LI +L  +GL+V+E TSF
Sbjct: 17  SLRAVSTSSMGTLPKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSF 76

Query: 142 VSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSK 201
           VSPKWVPQ+ D  +V+  IQ   G  +PVLTPNLKGFEAAVAAGAKEV IF +ASE F+K
Sbjct: 77  VSPKWVPQMGDHTEVLKGIQKFPGINYPVLTPNLKGFEAAVAAGAKEVVIFGAASELFTK 136

Query: 202 SNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMG 261
            NINC+IE+S  R+  +  AA+  +I VRGY+SC +GCP EG + P+KVA V+K+ Y MG
Sbjct: 137 KNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMG 196

Query: 262 CSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV 321
           C EISLGDTIGVGTPG +  ML AV+  VP+  LAVH HDTYGQAL+N L +LQMG+S V
Sbjct: 197 CYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQMGVSVV 256

Query: 322 DSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGS 381
           DSSV+GLGGCPYA+GASGN+ATED+VYML GLG+ T V+++KL+ AG+FIC+ L R + S
Sbjct: 257 DSSVAGLGGCPYAQGASGNLATEDLVYMLEGLGIHTGVNLQKLLEAGNFICQALNRKTSS 316

Query: 382 KTAIALSK 389
           K A A  K
Sbjct: 317 KVAQATCK 324

Key enzyme in ketogenesis (ketone body formation). Terminal step in leucine catabolism.

Homo sapiens (taxid: 9606)

EC: 4

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 4

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	398
297741659	398	unnamed protein product [Vitis vinifera]	0.904	0.904	0.765	1e-161
359481554	427	PREDICTED: hydroxymethylglutaryl-CoA lya	0.904	0.843	0.765	1e-161
255552523	377	hydroxymethylglutaryl-CoA lyase, putativ	0.829	0.875	0.821	1e-157
356571909	412	PREDICTED: hydroxymethylglutaryl-CoA lya	0.954	0.922	0.708	1e-152
124360527	402	Pyruvate carboxyltransferase [Medicago t	0.831	0.823	0.782	1e-149
356574064	435	PREDICTED: hydroxymethylglutaryl-CoA lya	0.997	0.912	0.638	1e-148
225435868	432	PREDICTED: hydroxymethylglutaryl-CoA lya	0.977	0.900	0.657	1e-148
356521713	433	PREDICTED: hydroxymethylglutaryl-CoA lya	0.982	0.903	0.646	1e-146
449437783	392	PREDICTED: hydroxymethylglutaryl-CoA lya	0.781	0.793	0.813	1e-146
297825907	469	hypothetical protein ARALYDRAFT_481553 [	0.824	0.699	0.775	1e-146

>gi|297741659|emb|CBI32791.3| unnamed protein product [Vitis vinifera]

 Score =  574 bits (1480), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 293/383 (76%), Positives = 322/383 (84%), Gaps = 23/383 (6%)

Query: 36  VNSLKGGNLDYTREKTISRKQVRNVSCTN-LNG-------------------YLSKAHYS 75
           ++S K  N +YT E    R+Q+RNVS  + LN                    YL+   YS
Sbjct: 19  LHSPKNSNYEYTEEVCPWRRQMRNVSRGDFLNRTPANMSRNHRVFRSVPDACYLTDRPYS 78

Query: 76  SSCTDNSTKDLTSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAV 135
           S C D  T+D  +KLL  +PGFVKIVEVGPRDGLQNEK+IVP VVKVELIK+LVSSGL +
Sbjct: 79  SHCNDECTRD--NKLLRSMPGFVKIVEVGPRDGLQNEKDIVPTVVKVELIKMLVSSGLPI 136

Query: 136 VEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASA 195
           VEATSFVSPKWVPQLADAKDVM AI+ VEG RFPVLTPNLKGFEAAVAAGAKEVAIFASA
Sbjct: 137 VEATSFVSPKWVPQLADAKDVMEAIRTVEGGRFPVLTPNLKGFEAAVAAGAKEVAIFASA 196

Query: 196 SESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSK 255
           SESFSKSNINC+IEDSL RYRDVALAAR+LSIPVRGY+SCVVGCP+EG+V PSKV YV K
Sbjct: 197 SESFSKSNINCSIEDSLTRYRDVALAARKLSIPVRGYISCVVGCPLEGVVSPSKVTYVGK 256

Query: 256 QLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQ 315
           +LYDMGC EISLGDTIGVGTPGTVIPMLE V+D VP+DKLAVHFHDTYGQALSNILASLQ
Sbjct: 257 ELYDMGCYEISLGDTIGVGTPGTVIPMLEDVIDVVPIDKLAVHFHDTYGQALSNILASLQ 316

Query: 316 MGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHL 375
           MGI+TVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGV+TNVD+ KLM+AGDFIC+HL
Sbjct: 317 MGITTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVKTNVDLGKLMLAGDFICQHL 376

Query: 376 GRTSGSKTAIALSKTSTANASKL 398
           GR SGSKTAIALS+    +ASKL
Sbjct: 377 GRQSGSKTAIALSRIR-GHASKL 398

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359481554|ref|XP_002282814.2| PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Vitis vinifera]

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 293/383 (76%), Positives = 322/383 (84%), Gaps = 23/383 (6%)

Query: 36  VNSLKGGNLDYTREKTISRKQVRNVSCTN-LNG-------------------YLSKAHYS 75
           ++S K  N +YT E    R+Q+RNVS  + LN                    YL+   YS
Sbjct: 48  LHSPKNSNYEYTEEVCPWRRQMRNVSRGDFLNRTPANMSRNHRVFRSVPDACYLTDRPYS 107

Query: 76  SSCTDNSTKDLTSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAV 135
           S C D  T+D  +KLL  +PGFVKIVEVGPRDGLQNEK+IVP VVKVELIK+LVSSGL +
Sbjct: 108 SHCNDECTRD--NKLLRSMPGFVKIVEVGPRDGLQNEKDIVPTVVKVELIKMLVSSGLPI 165

Query: 136 VEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASA 195
           VEATSFVSPKWVPQLADAKDVM AI+ VEG RFPVLTPNLKGFEAAVAAGAKEVAIFASA
Sbjct: 166 VEATSFVSPKWVPQLADAKDVMEAIRTVEGGRFPVLTPNLKGFEAAVAAGAKEVAIFASA 225

Query: 196 SESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSK 255
           SESFSKSNINC+IEDSL RYRDVALAAR+LSIPVRGY+SCVVGCP+EG+V PSKV YV K
Sbjct: 226 SESFSKSNINCSIEDSLTRYRDVALAARKLSIPVRGYISCVVGCPLEGVVSPSKVTYVGK 285

Query: 256 QLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQ 315
           +LYDMGC EISLGDTIGVGTPGTVIPMLE V+D VP+DKLAVHFHDTYGQALSNILASLQ
Sbjct: 286 ELYDMGCYEISLGDTIGVGTPGTVIPMLEDVIDVVPIDKLAVHFHDTYGQALSNILASLQ 345

Query: 316 MGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHL 375
           MGI+TVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGV+TNVD+ KLM+AGDFIC+HL
Sbjct: 346 MGITTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVKTNVDLGKLMLAGDFICQHL 405

Query: 376 GRTSGSKTAIALSKTSTANASKL 398
           GR SGSKTAIALS+    +ASKL
Sbjct: 406 GRQSGSKTAIALSRIR-GHASKL 427

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255552523|ref|XP_002517305.1| hydroxymethylglutaryl-CoA lyase, putative [Ricinus communis] gi|223543568|gb|EEF45098.1| hydroxymethylglutaryl-CoA lyase, putative [Ricinus communis]

 Score =  561 bits (1445), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 272/331 (82%), Positives = 303/331 (91%), Gaps = 1/331 (0%)

Query: 68  YLSKAHYSSSCTDNSTKDLTSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKL 127
           +LS  HY+S   D S  D   KLL  VP +VKIVEVGPRDGLQNEK++VP  +KVELIK+
Sbjct: 48  HLSNRHYTSHSNDKSVGDFVDKLLRYVPEYVKIVEVGPRDGLQNEKDVVPTAIKVELIKM 107

Query: 128 LVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAK 187
           LVSSGL VVEATSFVSPKWVPQLADAKDVMAAI++VEGARFPVLTPNLKGFEAAVAAGAK
Sbjct: 108 LVSSGLPVVEATSFVSPKWVPQLADAKDVMAAIRDVEGARFPVLTPNLKGFEAAVAAGAK 167

Query: 188 EVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPP 247
           EVA+FASASESFSKSNINC+IEDSL+RY DVALAA +LSIP+RGY+SCVVGCP+EGM+ P
Sbjct: 168 EVAVFASASESFSKSNINCSIEDSLVRYSDVALAASKLSIPMRGYISCVVGCPIEGMISP 227

Query: 248 SKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQAL 307
           SKVAYV+K+L DMGCSEISLGDTIGVGTPGTVI MLEAV++ V +DKLAVHFHDTYGQAL
Sbjct: 228 SKVAYVAKRLCDMGCSEISLGDTIGVGTPGTVITMLEAVMEVVAIDKLAVHFHDTYGQAL 287

Query: 308 SNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIA 367
           SNILASLQ+GI TVDSSVSGLGGCPYA GASGNVATEDVVYMLNGLGV+TNVD++K+M+A
Sbjct: 288 SNILASLQIGIKTVDSSVSGLGGCPYAIGASGNVATEDVVYMLNGLGVKTNVDLQKVMLA 347

Query: 368 GDFICKHLGRTSGSKTAIALSKTSTANASKL 398
           G+FICKHLGRT+GSKTAIALSK  TA+ASKL
Sbjct: 348 GNFICKHLGRTTGSKTAIALSKI-TAHASKL 377

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356571909|ref|XP_003554113.1| PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Glycine max]

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 279/394 (70%), Positives = 315/394 (79%), Gaps = 14/394 (3%)

Query: 18  LMSNLKESLGVAKFASVGVNSLKGGNLDYTRE--KTISRKQVRNVS-CTNLNG------- 67
           L++    S     F S GV S     +  TRE      +  V+ +S C N          
Sbjct: 20  LVTAFSGSAAFHAFPSHGVESPHVREITNTREVKNDFDKYHVKGLSRCLNWTSRSNANSQ 79

Query: 68  ---YLSKAHYSSSCTDNSTKDLTSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVEL 124
              Y+   H++S C D  +K+ +SKLL  +P +VKIVEVG RDGLQNEK I+P  VKVEL
Sbjct: 80  ASCYVVNRHFASDCNDICSKEFSSKLLTSIPDYVKIVEVGARDGLQNEKAIIPTNVKVEL 139

Query: 125 IKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAA 184
           IKLLVSSGL+VVEATSFVSPKWVPQLADAKDV+AAIQNVEGARFPVLTPNLKGFEAAVAA
Sbjct: 140 IKLLVSSGLSVVEATSFVSPKWVPQLADAKDVLAAIQNVEGARFPVLTPNLKGFEAAVAA 199

Query: 185 GAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGM 244
           GAKEVA+F +ASESFSK+N+N +IED+L R  D+A AAR LSIPVRGY+SCVVGCP+EG 
Sbjct: 200 GAKEVAVFPAASESFSKANLNSSIEDNLARCHDIASAARSLSIPVRGYISCVVGCPLEGN 259

Query: 245 VPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYG 304
           + P+KVAYV+K LY+MGCSEISLGDTIGVGTPGTVI MLEAVLD VP D LAVHFHDTYG
Sbjct: 260 IAPAKVAYVAKSLYEMGCSEISLGDTIGVGTPGTVISMLEAVLDVVPTDMLAVHFHDTYG 319

Query: 305 QALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKL 364
           QALSNIL SLQMGISTVDSSVSGLGGCPYAKGA+GNVATEDVVYMLNGLGV+TNVD+ KL
Sbjct: 320 QALSNILISLQMGISTVDSSVSGLGGCPYAKGATGNVATEDVVYMLNGLGVKTNVDLGKL 379

Query: 365 MIAGDFICKHLGRTSGSKTAIALSKTSTANASKL 398
           M+AGDFICKHLGR SGSK A ALSK  T++ASKL
Sbjct: 380 MLAGDFICKHLGRASGSKAATALSKV-TSHASKL 412

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|124360527|gb|ABN08537.1| Pyruvate carboxyltransferase [Medicago truncatula]

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 259/331 (78%), Positives = 291/331 (87%)

Query: 68  YLSKAHYSSSCTDNSTKDLTSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKL 127
           Y+   H+ +      TK+ +SKL   +P FVKIVEVG RDGLQNEK IVP  VK+ELIKL
Sbjct: 72  YVVNRHFRADNNGICTKEFSSKLRKNIPDFVKIVEVGARDGLQNEKAIVPTDVKIELIKL 131

Query: 128 LVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAK 187
           LVSSGL+VVEATSFVSPKWVPQLADAKDV+AA+++VEGA FPVLTPNLKGFEAAVAAGAK
Sbjct: 132 LVSSGLSVVEATSFVSPKWVPQLADAKDVLAAVRDVEGASFPVLTPNLKGFEAAVAAGAK 191

Query: 188 EVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPP 247
           EVA+F +ASESFSK+N+NC IED+L R RD+A A+R L+IPVRGY+SCVVGCP+EG + P
Sbjct: 192 EVAVFPAASESFSKANLNCGIEDNLARCRDIASASRSLTIPVRGYISCVVGCPLEGRIAP 251

Query: 248 SKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQAL 307
            KVAYV+K LY+MG SEISLGDTIGVGTPGTVIPMLEAVLD VP+DKLAVHFHDTYGQAL
Sbjct: 252 VKVAYVAKSLYEMGISEISLGDTIGVGTPGTVIPMLEAVLDVVPIDKLAVHFHDTYGQAL 311

Query: 308 SNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIA 367
           SNIL SLQMGISTVDSSVSGLGGCPYAKGA+GNVATEDVVYMLNGLGV+TNVD+ KLM A
Sbjct: 312 SNILISLQMGISTVDSSVSGLGGCPYAKGATGNVATEDVVYMLNGLGVKTNVDLGKLMHA 371

Query: 368 GDFICKHLGRTSGSKTAIALSKTSTANASKL 398
           GDFICKHLGR +GSK A AL+K +T NASKL
Sbjct: 372 GDFICKHLGRPTGSKAATALNKVTTCNASKL 402

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356574064|ref|XP_003555172.1| PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Glycine max]

 Score =  531 bits (1367), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 269/421 (63%), Positives = 318/421 (75%), Gaps = 24/421 (5%)

Query: 1   MQKAKSLDKFSRSALSPLMSNLKESLG---VAKFASVGVNSLKGGNLDYTREKTISRKQV 57
           M     + +FS +A  P + N    LG   +   +    NS    + +YT E    R+Q 
Sbjct: 16  MSTIDRIQRFSSAACCPRVDNFNLGLGNCWIEGRSCSTSNSCNEDSEEYTEETFPWRRQR 75

Query: 58  RNVS--------------------CTNLNGYLSKAHYSSSCTDNSTKDLTSKLLGRVPGF 97
           R++S                      + + Y S   YS    +N+ +D+  K +  +P F
Sbjct: 76  RDLSRGDTFSQKSMTMGRNSMKFGMIDNSFYTSDYQYSPQNNNNNVQDMAYKFMKGIPNF 135

Query: 98  VKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVM 157
           VKIVEVGPRDGLQNEKNIVP  VK+ELI  L SSGL+V+EATSFVSPKWVPQLADAKDVM
Sbjct: 136 VKIVEVGPRDGLQNEKNIVPTDVKIELIHRLASSGLSVIEATSFVSPKWVPQLADAKDVM 195

Query: 158 AAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRD 217
            A+ N+ G R PVLTPNLKGFEAA+AAGA+EVA+FASASESFSKSNINC+IE+SL+RYR 
Sbjct: 196 QAVHNLGGIRLPVLTPNLKGFEAAIAAGAREVAVFASASESFSKSNINCSIEESLVRYRA 255

Query: 218 VALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPG 277
           V  AA++LSIPVRGY+SCVVGCPVEG +PPSKVAYV+K+LYDMGC EISLGDTIGVGTPG
Sbjct: 256 VTRAAKQLSIPVRGYVSCVVGCPVEGPIPPSKVAYVAKELYDMGCFEISLGDTIGVGTPG 315

Query: 278 TVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGA 337
           TV+PML AV+  VP +KLAVHFHDTYGQ+L NIL SLQMGIS VDSSV+GLGGCPYAKGA
Sbjct: 316 TVVPMLLAVMAVVPAEKLAVHFHDTYGQSLPNILVSLQMGISAVDSSVAGLGGCPYAKGA 375

Query: 338 SGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANASK 397
           SGNVATEDVVYMLNGLGV+TNVD+ KLM+AG+FI KHLGR SGSKTA+A S+  TA+ASK
Sbjct: 376 SGNVATEDVVYMLNGLGVKTNVDLGKLMLAGEFIGKHLGRPSGSKTAVAFSRV-TADASK 434

Query: 398 L 398
           +
Sbjct: 435 I 435

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225435868|ref|XP_002263865.1| PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial [Vitis vinifera] gi|296083893|emb|CBI24281.3| unnamed protein product [Vitis vinifera]

 Score =  529 bits (1363), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 273/415 (65%), Positives = 316/415 (76%), Gaps = 26/415 (6%)

Query: 7   LDKFSRSALSPLMSNLKESLGVAKFASVGVNSLKGGNLDY---TREKTISRKQVRNVS-- 61
           L +FS +A  P   ++   +G         +S    N DY   TRE    ++Q R  S  
Sbjct: 21  LQRFSSNACRPRAEDM--GMGSCWIDGRTCSSSNNCNEDYEGYTREAFQWKRQTRETSQG 78

Query: 62  -------------C----TNLNGYLSKAH-YSSSCTDNSTKDLTSKLLGRVPGFVKIVEV 103
                        C    ++ + + S  H Y   C +   + + +K LG +P FVKIVEV
Sbjct: 79  DSLKRRTSSQGRSCMVYGSSCDSWYSSDHQYGFQCNNKGVRGMANKFLGGIPKFVKIVEV 138

Query: 104 GPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV 163
           GPRDGLQNEKNIVP  VKVELI  LVS GL VVEATSFVSPKWVPQLADAKDVM A++N+
Sbjct: 139 GPRDGLQNEKNIVPTAVKVELIHRLVSCGLPVVEATSFVSPKWVPQLADAKDVMEAVRNL 198

Query: 164 EGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAR 223
           EGAR PVLTPNLKGFEAA+AAGAKEVAIFASASESFSKSNINC+IE+SL RYR VALAA+
Sbjct: 199 EGARLPVLTPNLKGFEAAIAAGAKEVAIFASASESFSKSNINCSIEESLTRYRAVALAAK 258

Query: 224 ELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPML 283
           +LSIPVRGY+SCVVGCPVEG + PSKVAYV+K+LYDMGC EISLGDTIGV TPG ++PML
Sbjct: 259 KLSIPVRGYVSCVVGCPVEGAISPSKVAYVAKELYDMGCFEISLGDTIGVATPGAIVPML 318

Query: 284 EAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVAT 343
           EAV+  VPV+KLAVHFHDTYGQ+L NIL SLQMGIST+DSSV+GLGGCPYAKGASGNVAT
Sbjct: 319 EAVMAVVPVEKLAVHFHDTYGQSLPNILLSLQMGISTIDSSVAGLGGCPYAKGASGNVAT 378

Query: 344 EDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANASKL 398
           EDVVYMLNGLGV+TNVD+ KLM+ GDFI   LGR SGSKTAIALS+ +  +ASK+
Sbjct: 379 EDVVYMLNGLGVKTNVDLGKLMLVGDFISNRLGRPSGSKTAIALSRVNV-DASKI 432

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356521713|ref|XP_003529496.1| PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Glycine max]

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 267/413 (64%), Positives = 315/413 (76%), Gaps = 22/413 (5%)

Query: 7   LDKFSRSALSPLMSNL-KESLGVAKFASVGVNSLKGGNLDYTREKTISRKQVRNVS---- 61
           + +FS +A  P + NL   +  +   +    NS    N +YT E    R+Q R++S    
Sbjct: 22  IQRFSSAACRPRVDNLGMGNCWIEGRSCSTSNSCDEDNEEYTAETFPWRRQTRDLSRGDS 81

Query: 62  ----------------CTNLNGYLSKAHYSSSCTDNSTKDLTSKLLGRVPGFVKIVEVGP 105
                             + + Y S   YS    + + +D+  K +  +P FVKIVEVGP
Sbjct: 82  FSQKTMTMGRNSMKFGMIDNSFYASDYQYSPQSNNKNVQDMPYKFMKGIPKFVKIVEVGP 141

Query: 106 RDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEG 165
           RDGLQNEKNIVP  VK+ELI  L SSGL+V+EATSFVSPKWVPQLADAKDVM A+ N+ G
Sbjct: 142 RDGLQNEKNIVPTDVKIELIHRLASSGLSVIEATSFVSPKWVPQLADAKDVMQAVHNLGG 201

Query: 166 ARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAREL 225
            R PVLTPNLKGFEAA+AAGA+EVA+FASASESFSKSNINC+IE+SL+RYR V  AA+EL
Sbjct: 202 IRLPVLTPNLKGFEAAIAAGAREVAVFASASESFSKSNINCSIEESLVRYRAVTHAAKEL 261

Query: 226 SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEA 285
           SIPVRGY+SCVVGCPVEG +PPS+VAYV+K+LYDMGC EISLGDTIGVGTPGTV+PML A
Sbjct: 262 SIPVRGYVSCVVGCPVEGPIPPSRVAYVAKELYDMGCFEISLGDTIGVGTPGTVVPMLLA 321

Query: 286 VLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATED 345
           V+  VP +KLAVHFHDTYGQ+L+NIL SLQMGIS VDSSV+GLGGCPYAKGASGNVATED
Sbjct: 322 VMAVVPAEKLAVHFHDTYGQSLANILVSLQMGISAVDSSVAGLGGCPYAKGASGNVATED 381

Query: 346 VVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANASKL 398
           VVYMLNGLGV+TNVD+ KLM AG+FI KHLGR SGSKT IA S+  TA+ASK+
Sbjct: 382 VVYMLNGLGVKTNVDLGKLMSAGEFIGKHLGRPSGSKTTIAFSRV-TADASKI 433

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449437783|ref|XP_004136670.1| PREDICTED: hydroxymethylglutaryl-CoA lyase, mitochondrial-like [Cucumis sativus]

 Score =  524 bits (1349), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 258/317 (81%), Positives = 281/317 (88%), Gaps = 6/317 (1%)

Query: 88  SKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWV 147
           S+ L R+P FVKIVEVGPRDGLQNEK+IVP  VKV+LIK+LVSSGL VVEATSFVSPKWV
Sbjct: 76  SQYLCRIPPFVKIVEVGPRDGLQNEKHIVPTAVKVDLIKMLVSSGLPVVEATSFVSPKWV 135

Query: 148 PQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCT 207
           PQLADAK+VM  I+NVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINC+
Sbjct: 136 PQLADAKEVMEGIRNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCS 195

Query: 208 IEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL 267
           IE+SL RYR VA AAR+ S+PVRGY+SCVVGCP+EGMVP S VAYV+K+LY MGCSEISL
Sbjct: 196 IEESLHRYRQVADAARKHSLPVRGYVSCVVGCPIEGMVPASNVAYVAKELYSMGCSEISL 255

Query: 268 GDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSG 327
           GDTIGVGTPGTVIPMLE+V + VP + LAVHFHDTYGQALSNIL SLQMGI TVDSSVSG
Sbjct: 256 GDTIGVGTPGTVIPMLESVANVVPTENLAVHFHDTYGQALSNILVSLQMGIGTVDSSVSG 315

Query: 328 LGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIAL 387
           LGGCPYAKGASGNVATEDVVYMLNG+G +TNVD+ KLM+AGDFICK LGR S SK AIAL
Sbjct: 316 LGGCPYAKGASGNVATEDVVYMLNGIGAKTNVDLGKLMLAGDFICKQLGRPSASKVAIAL 375

Query: 388 SKTS------TANASKL 398
            K +      TA ASKL
Sbjct: 376 RKVASNTNKCTATASKL 392

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297825907|ref|XP_002880836.1| hypothetical protein ARALYDRAFT_481553 [Arabidopsis lyrata subsp. lyrata] gi|297326675|gb|EFH57095.1| hypothetical protein ARALYDRAFT_481553 [Arabidopsis lyrata subsp. lyrata]

 Score =  523 bits (1348), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 255/329 (77%), Positives = 290/329 (88%), Gaps = 1/329 (0%)

Query: 71  KAHYSSSCTDNSTKDLTSKLLGR-VPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLV 129
           K H  S+C++ + K  +S  + + +P FVKIVEVGPRDGLQNEKNIVP  VKVELI+ LV
Sbjct: 141 KEHKFSTCSNENGKMHSSNKISKGIPKFVKIVEVGPRDGLQNEKNIVPTSVKVELIQRLV 200

Query: 130 SSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEV 189
           SSGL VVEATSFVSPKWVPQLADAKDVM A+  ++GAR PVLTPNLKGFEAAV+AGAKEV
Sbjct: 201 SSGLPVVEATSFVSPKWVPQLADAKDVMDAVNTLDGARLPVLTPNLKGFEAAVSAGAKEV 260

Query: 190 AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSK 249
           AIFASASESFS SNINCTIE+SL+RYR VA AA+E S+PVRGY+SCVVGCPVEG VPPSK
Sbjct: 261 AIFASASESFSLSNINCTIEESLLRYRAVATAAKEHSVPVRGYVSCVVGCPVEGAVPPSK 320

Query: 250 VAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSN 309
           VAYV K+LYDMGC EISLGDTIG+GTPG+V+PMLEAV+  VP DKLAVHFHDTYGQAL+N
Sbjct: 321 VAYVVKELYDMGCFEISLGDTIGIGTPGSVVPMLEAVMAVVPADKLAVHFHDTYGQALAN 380

Query: 310 ILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGD 369
           IL SLQMGIS VDSS++GLGGCPYAKGASGNVATEDVVYMLNGLGV+TNVD+ KL+ AGD
Sbjct: 381 ILVSLQMGISIVDSSIAGLGGCPYAKGASGNVATEDVVYMLNGLGVQTNVDLGKLIAAGD 440

Query: 370 FICKHLGRTSGSKTAIALSKTSTANASKL 398
           FI KHLGR +GSK A+AL++  TA+ASK+
Sbjct: 441 FISKHLGRPNGSKAAVALNRRITADASKI 469

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	398
TAIR|locus:2039548	468	AT2G26800 [Arabidopsis thalian	0.886	0.754	0.674	1.2e-122
DICTYBASE|DDB_G0283813	406	hmgL "hydroxymethylglutaryl-Co	0.793	0.778	0.599	5.9e-96
MGI|MGI:2446108	343	Hmgcll1 "3-hydroxymethyl-3-met	0.748	0.868	0.608	1.4e-94
UNIPROTKB|Q8TB92	370	HMGCLL1 "3-hydroxymethyl-3-met	0.751	0.808	0.606	1.8e-94
RGD|1565090	343	Hmgcll1 "3-hydroxymethyl-3-met	0.756	0.877	0.599	3e-94
UNIPROTKB|F1PLJ1	304	HMGCLL1 "Uncharacterized prote	0.751	0.983	0.603	6.1e-94
RGD|620554	325	Hmgcl "3-hydroxymethyl-3-methy	0.773	0.947	0.597	1e-93
UNIPROTKB|E1BU09	342	HMGCLL1 "Uncharacterized prote	0.746	0.868	0.599	3.4e-93
MGI|MGI:96158	325	Hmgcl "3-hydroxy-3-methylgluta	0.773	0.947	0.590	3.4e-93
UNIPROTKB|F1NWD1	298	HMGCL "Hydroxymethylglutaryl-C	0.733	0.979	0.613	5.5e-93

TAIR|locus:2039548 AT2G26800 [Arabidopsis thaliana (taxid:3702)]

 Score = 1206 (429.6 bits), Expect = 1.2e-122, P = 1.2e-122
 Identities = 245/363 (67%), Positives = 285/363 (78%)

Query:    46 YTREKTISRKQVRNVS----CTNLNGYL--SKAH----YSSSCTDNSTKDLTSKLLGRVP 95
             +TR+ +      RN+S     + ++G L  SK+     YS+   +N T  +++K+   +P
Sbjct:   106 HTRKLSEGEHMFRNISFAGRTSTVSGTLRESKSFKEQKYSTFSNENGTSHISNKISKGIP 165

Query:    96 GFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKD 155
              FVKIVEVGPRDGLQNEKNIVP  VKVELI+ LVSSGL VVEATSFVSPKWVPQLADAKD
Sbjct:   166 KFVKIVEVGPRDGLQNEKNIVPTSVKVELIQRLVSSGLPVVEATSFVSPKWVPQLADAKD 225

Query:   156 VMAAIQNVEGARFPVLTPNLXXXXXXXXXXXXXXXXXXSASESFSKSNINCTIEDSLIRY 215
             VM A+  ++GAR PVLTPNL                  SASESFS SNINCTIE+SL+RY
Sbjct:   226 VMDAVNTLDGARLPVLTPNLKGFQAAVSAGAKEVAIFASASESFSLSNINCTIEESLLRY 285

Query:   216 RDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGT 275
             R VA AA+E S+PVRGY+SCVVGCPVEG V PSKVAYV K+LYDMGC EISLGDTIG+GT
Sbjct:   286 RVVATAAKEHSVPVRGYVSCVVGCPVEGPVLPSKVAYVVKELYDMGCFEISLGDTIGIGT 345

Query:   276 PGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAK 335
             PG+V+PMLEAV+  VP DKLAVHFHDTYGQAL+NIL SLQMGIS VDSS++GLGGCPYAK
Sbjct:   346 PGSVVPMLEAVMAVVPADKLAVHFHDTYGQALANILVSLQMGISIVDSSIAGLGGCPYAK 405

Query:   336 GASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANA 395
             GASGNVATEDVVYMLNGLGV TNVD+ KL+ AGDFI KHLGR +GSK A+AL++  TA+A
Sbjct:   406 GASGNVATEDVVYMLNGLGVHTNVDLGKLIAAGDFISKHLGRPNGSKAAVALNRRITADA 465

Query:   396 SKL 398
             SK+
Sbjct:   466 SKI 468

GO:0003824 "catalytic activity" evidence=IEA

GO:0004419 "hydroxymethylglutaryl-CoA lyase activity" evidence=ISS;IDA

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0006551 "leucine metabolic process" evidence=ISS

DICTYBASE|DDB_G0283813 hmgL "hydroxymethylglutaryl-CoA lyase" [Dictyostelium discoideum (taxid:44689)]

 Score = 954 (340.9 bits), Expect = 5.9e-96, P = 5.9e-96
 Identities = 190/317 (59%), Positives = 231/317 (72%)

Query:    80 DNSTKDLTSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEAT 139
             +N  K   ++  G  P +VKIVEVGPRDGLQNEK IVP V K++LI  L  +GL+VVEAT
Sbjct:    37 ENEFKRFQNRF-GPFPEYVKIVEVGPRDGLQNEKIIVPTVDKIQLINRLAQTGLSVVEAT 95

Query:   140 SFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNLXXXXXXXXXXXXXXXXXXSASESF 199
             SFVSPKWVPQ+AD K+V+  I+ VEG  +P LTPN+                  +ASESF
Sbjct:    96 SFVSPKWVPQMADNKEVLRGIEKVEGVSYPCLTPNIQGFRAALDAGAKEIALFAAASESF 155

Query:   200 SKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYD 259
             SK NIN TIE+SL RY+DV  AARE  I VRGY+SCV+GCP E  VP SKV YVSK+LY+
Sbjct:   156 SKKNINATIEESLARYKDVCDAARENGIKVRGYVSCVLGCPYEQNVPISKVVYVSKKLYE 215

Query:   260 MGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGIS 319
              GC EISLGDTIG+GTPG    +L+A+  A+P+  +AVHFHDTYGQAL+NIL SLQ GIS
Sbjct:   216 FGCYEISLGDTIGIGTPGATHKLLQAMSQAIPMSAIAVHFHDTYGQALANILTSLQFGIS 275

Query:   320 TVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTS 379
             TVDSSVSGLGGCPYAKGA+GNVATEDV+YM+  LG+  NVD+ KLM    +I K L R+ 
Sbjct:   276 TVDSSVSGLGGCPYAKGATGNVATEDVLYMMKDLGINCNVDMNKLMDVSLWISKKLNRSP 335

Query:   380 GSKTAIALSKTSTANAS 396
              SK ++ALS  ++ + S
Sbjct:   336 SSKVSLALSHKASNSIS 352

GO:0008152 "metabolic process" evidence=IEA

GO:0004419 "hydroxymethylglutaryl-CoA lyase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0016829 "lyase activity" evidence=IEA

MGI|MGI:2446108 Hmgcll1 "3-hydroxymethyl-3-methylglutaryl-Coenzyme A lyase-like 1" [Mus musculus (taxid:10090)]

 Score = 941 (336.3 bits), Expect = 1.4e-94, P = 1.4e-94
 Identities = 182/299 (60%), Positives = 227/299 (75%)

Query:    88 SKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWV 147
             S+L G +P +VKIVEVGPRDGLQNEK IVP  +K+ELI  L  +GL+V+E TSFVS +WV
Sbjct:    39 SQLPG-LPEYVKIVEVGPRDGLQNEKVIVPTDIKIELINQLSQTGLSVIEVTSFVSSRWV 97

Query:   148 PQLADAKDVMAAIQNVEGARFPVLTPNLXXXXXXXXXXXXXXXXXXSASESFSKSNINCT 207
             PQ+AD  +VM  I+   G R+PVLTPNL                  +ASESFSK NINC+
Sbjct:    98 PQMADHAEVMRGIRQYPGVRYPVLTPNLQGFQHAVAAGATEIAVFGAASESFSKKNINCS 157

Query:   208 IEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL 267
             IE+S+ R+++V  +AR + IPVRGY+SC +GCP EG + P KV  VSK+LY MGC EISL
Sbjct:   158 IEESMGRFQEVISSARHMDIPVRGYVSCALGCPYEGSITPQKVTEVSKRLYGMGCYEISL 217

Query:   268 GDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSG 327
             GDTIGVGTPG++  MLE+V+  +P   LAVH HDTYGQAL+NIL +LQMGI+ VDS+VSG
Sbjct:   218 GDTIGVGTPGSMKMMLESVMKEIPPGALAVHCHDTYGQALANILTALQMGINVVDSAVSG 277

Query:   328 LGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIA 386
             LGGCPYAKGASGNVATED++YMLNG+G+ T VD+ K+M AG+FICK + +T+ SK A A
Sbjct:   278 LGGCPYAKGASGNVATEDLIYMLNGMGLNTGVDLYKVMEAGEFICKAVNKTTNSKVAQA 336

GO:0003824 "catalytic activity" evidence=IEA

GO:0004419 "hydroxymethylglutaryl-CoA lyase activity" evidence=ISO

GO:0005737 "cytoplasm" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=ISO

GO:0005829 "cytosol" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016829 "lyase activity" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

GO:0046951 "ketone body biosynthetic process" evidence=ISO

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO

UNIPROTKB|Q8TB92 HMGCLL1 "3-hydroxymethyl-3-methylglutaryl-CoA lyase, cytoplasmic" [Homo sapiens (taxid:9606)]

 Score = 940 (336.0 bits), Expect = 1.8e-94, P = 1.8e-94
 Identities = 182/300 (60%), Positives = 225/300 (75%)

Query:    87 TSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKW 146
             TS+L G +P FVKIVEVGPRDGLQNEK IVP  +K+E I  L  +GL+V+E TSFVS +W
Sbjct:    68 TSQLSG-LPEFVKIVEVGPRDGLQNEKVIVPTDIKIEFINRLSQTGLSVIEVTSFVSSRW 126

Query:   147 VPQLADAKDVMAAIQNVEGARFPVLTPNLXXXXXXXXXXXXXXXXXXSASESFSKSNINC 206
             VPQ+AD  +VM  I    G R+PVLTPNL                  +ASESFSK NINC
Sbjct:   127 VPQMADHTEVMKGIHQYPGVRYPVLTPNLQGFHHAVAAGATEISVFGAASESFSKKNINC 186

Query:   207 TIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEIS 266
             +IE+S+ ++ +V  +AR ++IP RGY+SC +GCP EG + P KV  VSK+LY MGC EIS
Sbjct:   187 SIEESMGKFEEVVKSARHMNIPARGYVSCALGCPYEGSITPQKVTEVSKRLYGMGCYEIS 246

Query:   267 LGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVS 326
             LGDTIGVGTPG++  MLE+V+  +P   LAVH HDTYGQAL+NIL +LQMGI+ VDS+VS
Sbjct:   247 LGDTIGVGTPGSMKRMLESVMKEIPPGALAVHCHDTYGQALANILTALQMGINVVDSAVS 306

Query:   327 GLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIA 386
             GLGGCPYAKGASGNVATED++YMLNGLG+ T V++ K+M AGDFICK + +T+ SK A A
Sbjct:   307 GLGGCPYAKGASGNVATEDLIYMLNGLGLNTGVNLYKVMEAGDFICKAVNKTTNSKVAQA 366

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0046872 "metal ion binding" evidence=ISS;TAS

GO:0004419 "hydroxymethylglutaryl-CoA lyase activity" evidence=ISS;IDA

GO:0046951 "ketone body biosynthetic process" evidence=IDA

GO:0048471 "perinuclear region of cytoplasm" evidence=IDA

GO:0016020 "membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0005783 "endoplasmic reticulum" evidence=IDA

RGD|1565090 Hmgcll1 "3-hydroxymethyl-3-methylglutaryl-CoA lyase-like 1" [Rattus norvegicus (taxid:10116)]

 Score = 938 (335.3 bits), Expect = 3.0e-94, P = 3.0e-94
 Identities = 181/302 (59%), Positives = 224/302 (74%)

Query:    88 SKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWV 147
             S+L G +P +VKIVEVGPRDGLQNEK IVP  +K+E I  L  +GL+V+E TSFVS +WV
Sbjct:    39 SQLSG-LPEYVKIVEVGPRDGLQNEKVIVPTDIKIEFINQLSQTGLSVIEVTSFVSSRWV 97

Query:   148 PQLADAKDVMAAIQNVEGARFPVLTPNLXXXXXXXXXXXXXXXXXXSASESFSKSNINCT 207
             PQ+AD  +VM  I    G R+PVL PNL                  +ASESFSK NINC+
Sbjct:    98 PQMADHAEVMGGIHQYPGVRYPVLVPNLQGLQHAVAAGATEIAVFGAASESFSKKNINCS 157

Query:   208 IEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL 267
             IE+S+ R+  V  +AR ++IPVRGY+SC +GCP EG + P KV  VSK+LY MGC EISL
Sbjct:   158 IEESMGRFEQVISSARHMNIPVRGYVSCALGCPYEGSIMPQKVTEVSKRLYSMGCYEISL 217

Query:   268 GDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSG 327
             GDT+GVGTPG++  MLE+V+  +P   LAVH HDTYGQAL+NIL +LQMGI+ VDS+VSG
Sbjct:   218 GDTVGVGTPGSMKTMLESVMKEIPPGALAVHCHDTYGQALANILTALQMGINVVDSAVSG 277

Query:   328 LGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIAL 387
             LGGCPYAKGASGNVATED++YMLNG+G+ T VD+ K+M AGDFICK + +T+ SK A A 
Sbjct:   278 LGGCPYAKGASGNVATEDLIYMLNGMGLNTGVDLHKVMEAGDFICKAVNKTTNSKVAQAS 337

Query:   388 SK 389
              K
Sbjct:   338 FK 339

GO:0004419 "hydroxymethylglutaryl-CoA lyase activity" evidence=ISO;ISS

GO:0005783 "endoplasmic reticulum" evidence=ISO;ISS

GO:0005789 "endoplasmic reticulum membrane" evidence=IEA

GO:0005829 "cytosol" evidence=ISO;ISS

GO:0016020 "membrane" evidence=ISO;ISS

GO:0046872 "metal ion binding" evidence=IEA

GO:0046951 "ketone body biosynthetic process" evidence=ISO;ISS

GO:0048471 "perinuclear region of cytoplasm" evidence=ISO;ISS

UNIPROTKB|F1PLJ1 HMGCLL1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 935 (334.2 bits), Expect = 6.1e-94, P = 6.1e-94
 Identities = 181/300 (60%), Positives = 224/300 (74%)

Query:    87 TSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKW 146
             TS+L G +P +VKIVEVGPRDGLQNEK IVP  +K+E I  L  +GL+V+E TSFVS KW
Sbjct:     2 TSQLSG-LPEYVKIVEVGPRDGLQNEKVIVPTDIKIEFINQLSQTGLSVIEVTSFVSSKW 60

Query:   147 VPQLADAKDVMAAIQNVEGARFPVLTPNLXXXXXXXXXXXXXXXXXXSASESFSKSNINC 206
             VPQ+AD  +VM  I    G R+PVLTPNL                  +ASESFSK NINC
Sbjct:    61 VPQMADHTEVMKGIHQYPGVRYPVLTPNLQGFHRAVAAGATEISVFGAASESFSKRNINC 120

Query:   207 TIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEIS 266
             +IE+S+ ++ +V  +AR ++IP RGY+SC +GCP EG + P KV  VSK+LY MGC EIS
Sbjct:   121 SIEESMEKFEEVVKSARHMNIPARGYVSCALGCPYEGNITPQKVTEVSKKLYGMGCYEIS 180

Query:   267 LGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVS 326
             LGDT GVGTPG++  MLE+V+  +P   LAVH HDTYGQAL+NIL +LQMGI+ VDS+VS
Sbjct:   181 LGDTTGVGTPGSMKRMLESVMKEIPSSALAVHCHDTYGQALANILTALQMGINVVDSAVS 240

Query:   327 GLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIA 386
             GLGGCPYAKGASGNVATED++YMLNGLG+ T V++ K+M AGDFICK + +T+ SK A A
Sbjct:   241 GLGGCPYAKGASGNVATEDLIYMLNGLGLNTGVNLYKVMEAGDFICKAVNKTTNSKVAQA 300

GO:0004419 "hydroxymethylglutaryl-CoA lyase activity" evidence=IEA

RGD|620554 Hmgcl "3-hydroxymethyl-3-methylglutaryl-CoA lyase" [Rattus norvegicus (taxid:10116)]

 Score = 933 (333.5 bits), Expect = 1.0e-93, P = 1.0e-93
 Identities = 184/308 (59%), Positives = 225/308 (73%)

Query:    82 STKDLTSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSF 141
             S +  ++  +G +P  VKIVEVGPRDGLQNEK+IVP  VK++LI +L  +GL V+EATSF
Sbjct:    17 SLRAASTSSMGTLPKRVKIVEVGPRDGLQNEKSIVPTPVKIKLIDMLSEAGLPVIEATSF 76

Query:   142 VSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNLXXXXXXXXXXXXXXXXXXSASESFSK 201
             VSPKWVPQ+AD  DV+  IQ   G  +PVLTPN+                  +ASE F++
Sbjct:    77 VSPKWVPQMADHSDVLKGIQKFPGINYPVLTPNMKGFEEAVAAGAKEVSIFGAASELFTR 136

Query:   202 SNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMG 261
              N+NC+IE+S  R+  V  AAR  SI VRGY+SC +GCP EG V P+KVA V+K+LY MG
Sbjct:   137 KNVNCSIEESFQRFDGVMQAARAASISVRGYVSCALGCPYEGKVSPAKVAEVAKKLYSMG 196

Query:   262 CSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV 321
             C EISLGDTIGVGTPG +  ML AVL  VPV  LAVH HDTYGQAL+N L +LQMG+S V
Sbjct:   197 CYEISLGDTIGVGTPGLMKDMLTAVLHEVPVAALAVHCHDTYGQALANTLVALQMGVSVV 256

Query:   322 DSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGS 381
             DSSV+GLGGCPYAKGASGN+ATED+VYML GLG+ T V+++KL+ AGDFIC+ L R + S
Sbjct:   257 DSSVAGLGGCPYAKGASGNLATEDLVYMLTGLGIHTGVNLQKLLEAGDFICQALNRKTSS 316

Query:   382 KTAIALSK 389
             K A A  K
Sbjct:   317 KVAQATCK 324

GO:0000062 "fatty-acyl-CoA binding" evidence=IPI

GO:0000287 "magnesium ion binding" evidence=IEA;ISO

GO:0001889 "liver development" evidence=IEP

GO:0004419 "hydroxymethylglutaryl-CoA lyase activity" evidence=ISO;ISS;IDA

GO:0005102 "receptor binding" evidence=IEA;ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IEA;ISO

GO:0005759 "mitochondrial matrix" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA;ISO

GO:0006637 "acyl-CoA metabolic process" evidence=IDA

GO:0007005 "mitochondrion organization" evidence=IEA;ISO

GO:0007584 "response to nutrient" evidence=IEP

GO:0009790 "embryo development" evidence=IEA;ISO

GO:0030145 "manganese ion binding" evidence=IEA;ISO

GO:0031406 "carboxylic acid binding" evidence=IPI

GO:0042594 "response to starvation" evidence=IEP

GO:0042803 "protein homodimerization activity" evidence=IEA;ISO

GO:0046872 "metal ion binding" evidence=ISO;ISS

GO:0046951 "ketone body biosynthetic process" evidence=ISO;IDA

GO:0051262 "protein tetramerization" evidence=IEA;ISO

GO:0070542 "response to fatty acid" evidence=IEP

UNIPROTKB|E1BU09 HMGCLL1 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 928 (331.7 bits), Expect = 3.4e-93, P = 3.4e-93
 Identities = 178/297 (59%), Positives = 223/297 (75%)

Query:    94 VPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADA 153
             +P +VKIVEVGPRDGLQNEK IVP   K+ELI  L  +GL  +E TSFVS KWVPQ+AD 
Sbjct:    42 LPEYVKIVEVGPRDGLQNEKVIVPTDTKIELINRLSKTGLPAIEVTSFVSSKWVPQMADH 101

Query:   154 KDVMAAIQNVEGARFPVLTPNLXXXXXXXXXXXXXXXXXXSASESFSKSNINCTIEDSLI 213
             K+VM  I+   G ++PVLTPNL                  +ASESFSK NINC+IE+S+ 
Sbjct:   102 KEVMRGIERHPGVQYPVLTPNLKGFHSAIAAGATEVSVFGAASESFSKMNINCSIEESIE 161

Query:   214 RYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGV 273
             ++ +VA +AR ++IPVRGY+SC +GCP EG + P+KVA VSK+LY MGC EISLGDTIGV
Sbjct:   162 KFEEVAKSARNMNIPVRGYVSCALGCPYEGDITPAKVAEVSKRLYSMGCYEISLGDTIGV 221

Query:   274 GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPY 333
             GTPG++  MLEAV+  +P+  LAVH HDTYGQAL+NIL ++QMG++ VDSSV+GLGGCPY
Sbjct:   222 GTPGSMKRMLEAVMKEIPLSALAVHCHDTYGQALANILTAIQMGVAVVDSSVAGLGGCPY 281

Query:   334 AKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKT 390
             AKGA+GNVATEDV+YMLNGLG+ T V++  +M AG+FIC  L + + SK A A   T
Sbjct:   282 AKGATGNVATEDVIYMLNGLGINTGVNLYTVMEAGNFICTALNKKTNSKVAQASFNT 338

GO:0004419 "hydroxymethylglutaryl-CoA lyase activity" evidence=IEA

GO:0005783 "endoplasmic reticulum" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0046951 "ketone body biosynthetic process" evidence=IEA

GO:0048471 "perinuclear region of cytoplasm" evidence=IEA

MGI|MGI:96158 Hmgcl "3-hydroxy-3-methylglutaryl-Coenzyme A lyase" [Mus musculus (taxid:10090)]

 Score = 928 (331.7 bits), Expect = 3.4e-93, P = 3.4e-93
 Identities = 182/308 (59%), Positives = 224/308 (72%)

Query:    82 STKDLTSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSF 141
             S + +++  +G +P  VKIVEVGPRDGLQNEK+IVP  VK+ LI +L  +GL V+EATSF
Sbjct:    17 SLRAVSTSSMGTLPKQVKIVEVGPRDGLQNEKSIVPTPVKIRLIDMLSEAGLPVIEATSF 76

Query:   142 VSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNLXXXXXXXXXXXXXXXXXXSASESFSK 201
             VSPKWVPQ+AD  DV+  IQ   G  +PVLTPN+                  + SE F++
Sbjct:    77 VSPKWVPQMADHSDVLKGIQKFPGINYPVLTPNMKGFEEAVAAGAKEVSVFGAVSELFTR 136

Query:   202 SNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMG 261
              N NC+IE+S  R+  V  AA+  SI VRGY+SC +GCP EG V P+KVA V+K+LY MG
Sbjct:   137 KNANCSIEESFQRFAGVMQAAQAASISVRGYVSCALGCPYEGKVSPAKVAEVAKKLYSMG 196

Query:   262 CSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV 321
             C EISLGDTIGVGTPG +  ML AV+  VPV  LAVH HDTYGQAL+N L +LQMG+S V
Sbjct:   197 CYEISLGDTIGVGTPGLMKDMLTAVMHEVPVTALAVHCHDTYGQALANTLVALQMGVSVV 256

Query:   322 DSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGS 381
             DSSV+GLGGCPYAKGASGN+ATED+VYMLNGLG+ T V+++KL+ AGDFIC+ L R + S
Sbjct:   257 DSSVAGLGGCPYAKGASGNLATEDLVYMLNGLGIHTGVNLQKLLEAGDFICQALNRKTSS 316

Query:   382 KTAIALSK 389
             K A A  K
Sbjct:   317 KVAQATCK 324

GO:0000062 "fatty-acyl-CoA binding" evidence=ISO

GO:0000287 "magnesium ion binding" evidence=ISO

GO:0003824 "catalytic activity" evidence=IEA

GO:0004419 "hydroxymethylglutaryl-CoA lyase activity" evidence=ISO

GO:0005102 "receptor binding" evidence=ISO

GO:0005739 "mitochondrion" evidence=ISO;IDA

GO:0005743 "mitochondrial inner membrane" evidence=IDA

GO:0005777 "peroxisome" evidence=ISO

GO:0006637 "acyl-CoA metabolic process" evidence=ISO

GO:0007005 "mitochondrion organization" evidence=IMP

GO:0009790 "embryo development" evidence=IMP

GO:0016829 "lyase activity" evidence=IEA

GO:0030145 "manganese ion binding" evidence=ISO

GO:0031406 "carboxylic acid binding" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0046872 "metal ion binding" evidence=ISO

GO:0046951 "ketone body biosynthetic process" evidence=ISO

GO:0051262 "protein tetramerization" evidence=ISO

UNIPROTKB|F1NWD1 HMGCL "Hydroxymethylglutaryl-CoA lyase, mitochondrial" [Gallus gallus (taxid:9031)]

 Score = 926 (331.0 bits), Expect = 5.5e-93, P = 5.5e-93
 Identities = 179/292 (61%), Positives = 219/292 (75%)

Query:    95 PGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAK 154
             P  VK+VEVGPRDGLQNEK++VP  VK+ LI +L  +GL V+EATSFVSP+WVPQ+AD  
Sbjct:     3 PQRVKVVEVGPRDGLQNEKSVVPTPVKIRLIDMLSETGLPVIEATSFVSPRWVPQMADHA 62

Query:   155 DVMAAIQNVEGARFPVLTPNLXXXXXXXXXXXXXXXXXXSASESFSKSNINCTIEDSLIR 214
             +VM  I  + G  +PVLTPNL                  +ASE F+K NINC+IE+SL R
Sbjct:    63 EVMQGINKLPGVSYPVLTPNLKGFQAAVAAGAKEVSIFGAASELFTKKNINCSIEESLER 122

Query:   215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVG 274
             + +V  AAR  SIPVRGY+SCV+GCP EG +  +KVA VSK++Y MGC EISLGDTIG+G
Sbjct:   123 FSEVMNAARAASIPVRGYVSCVLGCPYEGNISAAKVAEVSKKMYSMGCYEISLGDTIGIG 182

Query:   275 TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYA 334
             TPG++  ML AV+  VPV  LAVH HDTYGQAL+NIL +LQMG+S VD+SV+GLGGCPYA
Sbjct:   183 TPGSMKEMLAAVMKEVPVGALAVHCHDTYGQALANILVALQMGVSVVDASVAGLGGCPYA 242

Query:   335 KGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIA 386
             +GASGNVATED+VYMLNGLG+ T VD++KLM  G FIC  L R + SK + A
Sbjct:   243 QGASGNVATEDLVYMLNGLGIHTGVDLQKLMDTGTFICNALNRRTNSKVSQA 294

GO:0004419 "hydroxymethylglutaryl-CoA lyase activity" evidence=IEA

GO:0000287 "magnesium ion binding" evidence=IEA

GO:0005102 "receptor binding" evidence=IEA

GO:0005743 "mitochondrial inner membrane" evidence=IEA

GO:0005777 "peroxisome" evidence=IEA

GO:0007005 "mitochondrion organization" evidence=IEA

GO:0009790 "embryo development" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0051262 "protein tetramerization" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
O81027	HMGCL_ARATH	4, ., 1, ., 3, ., 4	0.7134	0.8869	0.7542	yes	no
Q29448	HMGCL_BOVIN	4, ., 1, ., 3, ., 4	0.6588	0.7512	0.92	yes	no
P97519	HMGCL_RAT	4, ., 1, ., 3, ., 4	0.6622	0.7512	0.92	yes	no
P35915	HMGCL_CHICK	4, ., 1, ., 3, ., 4	0.6542	0.7412	0.9899	yes	no
Q8JZS7	HMGC2_MOUSE	4, ., 1, ., 3, ., 4	0.6454	0.7487	0.8688	yes	no
Q5R9E1	HMGCL_PONAB	4, ., 1, ., 3, ., 4	0.6266	0.7738	0.9476	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	4.1.3.4	0.946
3rd Layer	4.1.3	0.963

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00023263001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (304 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00029076001	SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (381 aa)	•					•	•		0.942
	GSVIVG00013112001	SubName- Full=Chromosome undetermined scaffold_437, whole genome shotgun sequence; (146 aa)	•					•	•		0.935
	GSVIVG00036606001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (570 aa)	•		•				•		0.931
	GSVIVG00004609001	SubName- Full=Chromosome undetermined scaffold_751, whole genome shotgun sequence; (183 aa)	•					•	•		0.927
	GSVIVG00020472001	SubName- Full=Chromosome chr5 scaffold_2, whole genome shotgun sequence; (461 aa)	•					•	•		0.916
	GSVIVG00032013001	SubName- Full=Chromosome chr18 scaffold_61, whole genome shotgun sequence; (82 aa)						•			0.899
	GSVIVG00017784001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (111 aa)						•			0.899
	GSVIVG00013734001	SubName- Full=Chromosome undetermined scaffold_536, whole genome shotgun sequence; (136 aa)						•			0.899
	GSVIVG00013111001	Chromosome undetermined scaffold_437, whole genome shotgun sequence (1120 aa)						•			0.899
	GSVIVG00028552001	SubName- Full=Putative uncharacterized protein (Chromosome chr7 scaffold_44, whole genome shotg [...] (423 aa)						•	•		0.839

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	398
PLN02746	347	PLN02746, PLN02746, hydroxymethylglutaryl-CoA lyas	0.0
cd07938	274	cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-	1e-172
PRK05692	287	PRK05692, PRK05692, hydroxymethylglutaryl-CoA lyas	1e-171
cd03174	265	cd03174, DRE_TIM_metallolyase, DRE-TIM metallolyas	1e-100
COG0119	409	COG0119, LeuA, Isopropylmalate/homocitrate/citrama	4e-66
pfam00682	236	pfam00682, HMGL-like, HMGL-like	1e-55
cd07937	275	cd07937, DRE_TIM_PC_TC_5S, Pyruvate carboxylase an	1e-11
cd07943	263	cd07943, DRE_TIM_HOA, 4-hydroxy-2-oxovalerate aldo	2e-11
TIGR03217	333	TIGR03217, 4OH_2_O_val_ald, 4-hydroxy-2-oxovalerat	4e-11
PRK11858	378	PRK11858, aksA, trans-homoaconitate synthase; Revi	2e-10
TIGR02660	365	TIGR02660, nifV_homocitr, homocitrate synthase Nif	7e-10
COG5016	472	COG5016, COG5016, Pyruvate/oxaloacetate carboxyltr	4e-09
TIGR00973	494	TIGR00973, leuA_bact, 2-isopropylmalate synthase,	4e-09
TIGR01108	582	TIGR01108, oadA, oxaloacetate decarboxylase alpha	5e-09
PRK09282	592	PRK09282, PRK09282, pyruvate carboxylase subunit B	5e-09
cd07940	268	cd07940, DRE_TIM_IPMS, 2-isopropylmalate synthase	3e-08
PRK12330	499	PRK12330, PRK12330, oxaloacetate decarboxylase; Pr	3e-08
PRK12331	448	PRK12331, PRK12331, oxaloacetate decarboxylase; Pr	6e-08
cd07947	279	cd07947, DRE_TIM_Re_CS, Clostridium kluyveri Re-ci	7e-08
cd07945	280	cd07945, DRE_TIM_CMS, Leptospira interrogans citra	8e-08
cd07939	259	cd07939, DRE_TIM_NifV, Streptomyces rubellomurinus	1e-07
cd07948	262	cd07948, DRE_TIM_HCS, Saccharomyces cerevisiae hom	2e-07
TIGR02090	363	TIGR02090, LEU1_arch, isopropylmalate/citramalate/	4e-07
PRK08195	337	PRK08195, PRK08195, 4-hyroxy-2-oxovalerate/4-hydro	5e-07
PLN03228	503	PLN03228, PLN03228, methylthioalkylmalate synthase	5e-07
PRK14041	467	PRK14041, PRK14041, oxaloacetate decarboxylase; Pr	6e-07
PRK14040	593	PRK14040, PRK14040, oxaloacetate decarboxylase; Pr	8e-07
cd07944	266	cd07944, DRE_TIM_HOA_like, 4-hydroxy-2-oxovalerate	8e-07
PRK09389	488	PRK09389, PRK09389, (R)-citramalate synthase; Prov	1e-06
TIGR02146	344	TIGR02146, LysS_fung_arch, homocitrate synthase	4e-05
PRK00915	513	PRK00915, PRK00915, 2-isopropylmalate synthase; Va	1e-04
cd07941	273	cd07941, DRE_TIM_LeuA3, Desulfobacterium autotroph	4e-04
PRK12581	468	PRK12581, PRK12581, oxaloacetate decarboxylase; Pr	0.001
PRK14042	596	PRK14042, PRK14042, pyruvate carboxylase subunit B	0.002

>gnl|CDD|178347 PLN02746, PLN02746, hydroxymethylglutaryl-CoA lyase

 Score =  612 bits (1579), Expect = 0.0
 Identities = 268/331 (80%), Positives = 296/331 (89%)

Query: 68  YLSKAHYSSSCTDNSTKDLTSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKL 127
              +  YSSS  +     + +KLL  +P FVKIVEVGPRDGLQNEKNIVP  VKVELI+ 
Sbjct: 17  SFKEHQYSSSSNEVGVAHMHNKLLKGLPKFVKIVEVGPRDGLQNEKNIVPTSVKVELIQR 76

Query: 128 LVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAK 187
           LVSSGL VVEATSFVSPKWVPQLADAKDVMAA++N+EGARFPVLTPNLKGFEAA+AAGAK
Sbjct: 77  LVSSGLPVVEATSFVSPKWVPQLADAKDVMAAVRNLEGARFPVLTPNLKGFEAAIAAGAK 136

Query: 188 EVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPP 247
           EVA+FASASESFSKSNINC+IE+SL+RYR+VALAA++ SIPVRGY+SCVVGCP+EG VPP
Sbjct: 137 EVAVFASASESFSKSNINCSIEESLVRYREVALAAKKHSIPVRGYVSCVVGCPIEGPVPP 196

Query: 248 SKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQAL 307
           SKVAYV+K+LYDMGC EISLGDTIGVGTPGTV+PMLEAV+  VPVDKLAVHFHDTYGQAL
Sbjct: 197 SKVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQAL 256

Query: 308 SNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIA 367
           +NIL SLQMGISTVDSSV+GLGGCPYAKGASGNVATEDVVYMLNGLGV TNVD+ KLM A
Sbjct: 257 ANILVSLQMGISTVDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGVSTNVDLGKLMAA 316

Query: 368 GDFICKHLGRTSGSKTAIALSKTSTANASKL 398
           GDFI KHLGR SGSKTA+ALS   TA ASK+
Sbjct: 317 GDFISKHLGRPSGSKTAVALSARITAAASKI 347

Length = 347

>gnl|CDD|163676 cd07938, DRE_TIM_HMGL, 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain

 Score =  480 bits (1238), Expect = e-172
 Identities = 161/274 (58%), Positives = 206/274 (75%)

Query: 100 IVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAA 159
           IVEVGPRDGLQNEK  +P   K+ELI  L ++GL  +E TSFVSPKWVPQ+ADA++V+A 
Sbjct: 1   IVEVGPRDGLQNEKTFIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAG 60

Query: 160 IQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVA 219
           +    G R+  L PNL+G E A+AAG  EVA+F SASE+FS+ NINC+I +SL R+  VA
Sbjct: 61  LPRRPGVRYSALVPNLRGAERALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVA 120

Query: 220 LAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTV 279
             A+   + VRGY+S   GCP EG VPP +VA V+++L D+GC EISLGDTIGV TP  V
Sbjct: 121 ELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLDLGCDEISLGDTIGVATPAQV 180

Query: 280 IPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASG 339
             +LEAVL+  P +KLA+HFHDT GQAL+NILA+L+ G+   DSSV GLGGCP+A GA+G
Sbjct: 181 RRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRRFDSSVGGLGGCPFAPGATG 240

Query: 340 NVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICK 373
           NVATED+VYML G+G+ T +D+ KL+ A  +I +
Sbjct: 241 NVATEDLVYMLEGMGIETGIDLDKLLAAARWISE 274

3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 274

>gnl|CDD|180206 PRK05692, PRK05692, hydroxymethylglutaryl-CoA lyase; Provisional

 Score =  479 bits (1235), Expect = e-171
 Identities = 181/286 (63%), Positives = 220/286 (76%)

Query: 95  PGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAK 154
           P  VKIVEVGPRDGLQNEK  +P   K+ LI  L ++GL+ +E  SFVSPKWVPQ+ADA 
Sbjct: 2   PKRVKIVEVGPRDGLQNEKRFIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAA 61

Query: 155 DVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIR 214
           +VMA IQ   G  +  LTPNLKG EAA+AAGA EVA+FASASE+FS+ NINC+I +SL R
Sbjct: 62  EVMAGIQRRPGVTYAALTPNLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLER 121

Query: 215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVG 274
           +  VA AA++  + VRGY+SCV+GCP EG VPP  VA V+++L+ +GC EISLGDTIGVG
Sbjct: 122 FEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADVAERLFALGCYEISLGDTIGVG 181

Query: 275 TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYA 334
           TPG V  +LEAVL   P ++LA HFHDTYGQAL+NI ASL+ GI+  D+SV GLGGCPYA
Sbjct: 182 TPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGITVFDASVGGLGGCPYA 241

Query: 335 KGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSG 380
            GASGNVATEDV+YML+GLG+ T +D+ KL+ AG FI   LGR   
Sbjct: 242 PGASGNVATEDVLYMLHGLGIETGIDLDKLVRAGQFIQSKLGRPLP 287

Length = 287

>gnl|CDD|163674 cd03174, DRE_TIM_metallolyase, DRE-TIM metallolyase superfamily

 Score =  298 bits (767), Expect = e-100
 Identities = 104/275 (37%), Positives = 152/275 (55%), Gaps = 12/275 (4%)

Query: 101 VEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAI 160
            +   RDGLQ+E        K+E+ + L  +G+  +E  S  SPK VPQ+ D  +V+ AI
Sbjct: 1   TDTTLRDGLQSEGATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAI 60

Query: 161 -QNVEGARFPVLTPN-LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDV 218
            + V   +   L  N  KG E A+ AG  EV IF SASE+ S+ N+N + E+ L    + 
Sbjct: 61  RKLVPNVKLQALVRNREKGIERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEA 120

Query: 219 ALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGT 278
             AA+E  + V G L    GC       P  V  V+K L + G  EISL DT+G+ TP  
Sbjct: 121 IEAAKEAGLEVEGSLEDAFGCKT----DPEYVLEVAKALEEAGADEISLKDTVGLATPEE 176

Query: 279 VIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGAS 338
           V  +++A+ +A+P   L +H H+T G A++N LA+L+ G   VD SV+GLG        +
Sbjct: 177 VAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLG------ERA 230

Query: 339 GNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICK 373
           GN ATED+V  L GLG+ T +D+ KL+    ++ +
Sbjct: 231 GNAATEDLVAALEGLGIDTGIDLEKLLEISRYVEE 265

The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 265

>gnl|CDD|223197 COG0119, LeuA, Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]

 Score =  215 bits (550), Expect = 4e-66
 Identities = 75/283 (26%), Positives = 118/283 (41%), Gaps = 13/283 (4%)

Query: 98  VKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVM 157
           V I +   RDG Q          K+ + K L   G+  +EA   V+     +   A    
Sbjct: 3   VIIFDTTLRDGEQAPGVSFSVEEKIRIAKALDDLGVDYIEAGFPVASPGDFEFVRAIAEK 62

Query: 158 AAIQNVEGARFPVLTPNLK-GFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYR 216
           A +     A    L   +K   EA + AG   + IF + S+   +  +  T E+ L R  
Sbjct: 63  AGLF--ICALIAALARAIKRDIEALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAV 120

Query: 217 DVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTP 276
           D    AR+  + VR                P  +A V K   + G   I+L DT+GV TP
Sbjct: 121 DAVEYARDHGLEVRFSAEDAT------RTDPEFLAEVVKAAIEAGADRINLPDTVGVATP 174

Query: 277 GTVIPMLEAVLDAVPVD-KLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAK 335
             V  ++EA+   VP    L+VH H+  G A++N LA+++ G   V+ +V+G+G      
Sbjct: 175 NEVADIIEALKANVPNKVILSVHCHNDLGMAVANSLAAVEAGADQVEGTVNGIG---ERA 231

Query: 336 GASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRT 378
           G +        + +    GV T +D+ KL  A   + +  G  
Sbjct: 232 GNAALEEVVLALALRKDYGVDTGIDLEKLTEASRLVERLTGIP 274

Length = 409

>gnl|CDD|201390 pfam00682, HMGL-like, HMGL-like

 Score =  182 bits (464), Expect = 1e-55
 Identities = 74/251 (29%), Positives = 114/251 (45%), Gaps = 18/251 (7%)

Query: 107 DGLQNEKNIVPAVVKVELIKLLVSSGLAVVEAT-SFVSPKWVPQLADAKDVM--AAIQNV 163
           DG Q          K+ + + L  +G+  +E    F+SP     +    +V+  A IQ +
Sbjct: 1   DGEQALGAAFSVEEKLAIARALDEAGVDEIEVGFPFMSPTDFESVRAIAEVLKKAKIQAL 60

Query: 164 EGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAR 223
              R PV        EAA  AGA  V +F + S+   K  +N   E+   R      AAR
Sbjct: 61  --LR-PVEHDIDAAVEAAKGAGADRVHVFIATSDLHRKYKLNKDREEVADRAVAAVEAAR 117

Query: 224 ELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPML 283
              I V       +GC   G    + +  V +   + G + I++ DT+GV TP     ++
Sbjct: 118 SAGIDVE------LGCEDAGRTDLAFLIEVVEVAQEAGATRINIADTVGVLTPNEAADLI 171

Query: 284 EAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVAT 343
            A+ D VP   + VH H+  G A++N LA+++ G   VD +V+GLG        +GN A 
Sbjct: 172 SALKDRVPPVIIEVHCHNDLGMAVANSLAAVEAGADRVDGTVNGLG------ERAGNAAL 225

Query: 344 EDVVYMLNGLG 354
           E++V  L  LG
Sbjct: 226 EELVAALEVLG 236

This family contains a diverse set of enzymes. These include various aldolases and a region of pyruvate carboxylase. Length = 236

>gnl|CDD|163675 cd07937, DRE_TIM_PC_TC_5S, Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain

 Score = 64.4 bits (158), Expect = 1e-11
 Identities = 38/118 (32%), Positives = 60/118 (50%), Gaps = 15/118 (12%)

Query: 252 YVS--KQLYDMGCSEISLGDTIGVGTPGTV---IPMLEAVLDAVPVDKLAVHFHDTYGQA 306
           YV   K+L DMG   I + D  G+ TP      +  L+  +  +P+    +H HDT G A
Sbjct: 151 YVKLAKELEDMGADSICIKDMAGLLTPYAAYELVKALKKEVG-LPIH---LHTHDTSGLA 206

Query: 307 LSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKL 364
           ++  LA+ + G+  VD+++S L G       +   +TE +V  L G G  T +D+ KL
Sbjct: 207 VATYLAAAEAGVDIVDTAISPLSGG------TSQPSTESMVAALRGTGRDTGLDLEKL 258

This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex. In addition to the catalytic domain, transcarboxylase 5S has several other domains including a carbamoyl-phosphate synthase domain, a biotin carboxylase domain, a carboxyltransferase domain, and an ATP-grasp domain. Pyruvate carboxylase, like TC, is a biotin-dependent enzyme that catalyzes the carboxylation of pyruvate to produce oxaloacetate. In mammals, PC has critical roles in gluconeogenesis, lipogenesis, glyceroneogenesis, and insulin secretion. Inherited PC deficiencies are linked to serious diseases in humans such as lactic acidemia, hypoglycemia, psychomotor retardation, and death. PC is a single-chain enzyme and is active only in its homotetrameric form. PC has three domains, an N-terminal biotin carboxylase domain, a carboxyltransferase domain (this alignment model), and a C-terminal biotin-carboxyl carrier protein domain. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 275

>gnl|CDD|163681 cd07943, DRE_TIM_HOA, 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain

 Score = 63.7 bits (156), Expect = 2e-11
 Identities = 56/224 (25%), Positives = 99/224 (44%), Gaps = 42/224 (18%)

Query: 158 AAIQNVEGARFPVLTPNLKGF------EAAVAAGAKEVAIFASASESFSKSNINCTIEDS 211
           AA + ++ A+  VL   L G       + A   G   V +    +E+             
Sbjct: 67  AAAEALKQAKLGVLL--LPGIGTVDDLKMAADLGVDVVRVATHCTEA------------- 111

Query: 212 LIRYRDVAL----AARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL 267
                DV+     AAR+L + V G+L          M  P ++A  +K +   G   + +
Sbjct: 112 -----DVSEQHIGAARKLGMDVVGFLMM------SHMASPEELAEQAKLMESYGADCVYV 160

Query: 268 GDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSG 327
            D+ G   P  V   + A+ +A+    +  H H+  G A++N LA+++ G + +D S++G
Sbjct: 161 TDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLGLAVANSLAAVEAGATRIDGSLAG 220

Query: 328 LGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFI 371
           LG        +GN   E +V +L  +G+ T +D+ KLM A + +
Sbjct: 221 LGAG------AGNTPLEVLVAVLERMGIETGIDLYKLMDAAEDL 258

4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 263

>gnl|CDD|132261 TIGR03217, 4OH_2_O_val_ald, 4-hydroxy-2-oxovalerate aldolase

 Score = 63.1 bits (154), Expect = 4e-11
 Identities = 63/226 (27%), Positives = 103/226 (45%), Gaps = 33/226 (14%)

Query: 152 DAKDVMAAIQNVEGARFPVL-TP---NLKGFEAAVAAGAKEVAIFASASES-FSKSNINC 206
           D + + AA   V+ A+  VL  P    +   +AA  AGA+ V +    +E+  S+ +I  
Sbjct: 63  DLEYIEAAADVVKRAKVAVLLLPGIGTVHDLKAAYDAGARTVRVATHCTEADVSEQHIG- 121

Query: 207 TIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEIS 266
                          AREL +   G+L       +  M PP K+A  +K +   G   + 
Sbjct: 122 --------------MARELGMDTVGFLM------MSHMTPPEKLAEQAKLMESYGADCVY 161

Query: 267 LGDTIGVGTPGTVIPMLEAVLDAV-PVDKLAVHFHDTYGQALSNILASLQMGISTVDSSV 325
           + D+ G   P  V   + A+   + P  ++  H H     A++N +A+++ G + +D+S+
Sbjct: 162 IVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAGATRIDASL 221

Query: 326 SGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFI 371
            GLG      GA GN   E  V +L+ LG  T  D+ KLM A + I
Sbjct: 222 RGLGA-----GA-GNAPLEVFVAVLDRLGWNTGCDLFKLMDAAEDI 261

Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated [Energy metabolism, Other]. Length = 333

>gnl|CDD|183341 PRK11858, aksA, trans-homoaconitate synthase; Reviewed

 Score = 61.7 bits (151), Expect = 2e-10
 Identities = 72/296 (24%), Positives = 122/296 (41%), Gaps = 74/296 (25%)

Query: 98  VKIVEVGPRDGLQNEKNIVPAVV-----KVELIKLLVSSGLAVVEATSF--VSPKWVPQL 150
           ++IV+   RDG Q      P VV     K+ + ++L   G+  +EA  F  VS       
Sbjct: 5   IEIVDTTLRDGEQ-----TPGVVFTNEEKLAIARMLDEIGVDQIEA-GFPAVS------- 51

Query: 151 ADAKDVMAAIQNVEGARFPVLT---PNLKGFEAAVAAGAKEVAIFASASESFSKSNINCT 207
            D K+ + AI    G    +L          +A++  G   V IF + S+   K  +  T
Sbjct: 52  EDEKEAIKAIAK-LGLNASILALNRAVKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKT 110

Query: 208 IEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVS------------- 254
            E+ L R  +    A++                  G+       YVS             
Sbjct: 111 REEVLERMVEAVEYAKD-----------------HGL-------YVSFSAEDASRTDLDF 146

Query: 255 -KQLY----DMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSN 309
             +      + G   +   DT+G+  P T+  +++ +++AV +  + VH H+ +G A +N
Sbjct: 147 LIEFAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEAVDIP-IEVHCHNDFGMATAN 205

Query: 310 ILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGL-GVRTNVDIRKL 364
            LA ++ G   V ++V+GLG        +GN A E+VV  L  L G+   +D  +L
Sbjct: 206 ALAGIEAGAKQVHTTVNGLG------ERAGNAALEEVVMALKYLYGIDLGIDTERL 255

Length = 378

>gnl|CDD|233965 TIGR02660, nifV_homocitr, homocitrate synthase NifV

 Score = 59.6 bits (145), Expect = 7e-10
 Identities = 65/283 (22%), Positives = 114/283 (40%), Gaps = 36/283 (12%)

Query: 106 RDGLQNEKNIVPAVV-----KVELIKLLVSSGLAVVEATSFVSPKWVPQLADA-KDVMAA 159
           RDG Q      P V      K+ + + L  +G+  +E         +P + +  + V+ A
Sbjct: 10  RDGEQA-----PGVAFTAAEKLAIARALDEAGVDELEVG-------IPAMGEEERAVIRA 57

Query: 160 IQNVEGARFPVLT---PNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYR 216
           I    G    ++          EAA   G   V I    S+   ++ +       L R  
Sbjct: 58  IVA-LGLPARLMAWCRARDADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLA 116

Query: 217 DVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTP 276
            +   AR+  + V       VG        P  +  +++   + G       DT+G+  P
Sbjct: 117 RLVSFARDRGLFV------SVGGEDASRADPDFLVELAEVAAEAGADRFRFADTVGILDP 170

Query: 277 GTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKG 336
            +   ++ A+  AV +  L +H H+  G A +N LA+++ G + V+++V+GLG       
Sbjct: 171 FSTYELVRALRQAVDLP-LEMHAHNDLGMATANTLAAVRAGATHVNTTVNGLG------E 223

Query: 337 ASGNVATEDVVYMLNGL-GVRTNVDIRKLMIAGDFICKHLGRT 378
            +GN A E+V   L  L G  T +D  +L      + +  GR 
Sbjct: 224 RAGNAALEEVAMALKRLLGRDTGIDTSRLPALSQLVARASGRP 266

This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase [Biosynthesis of cofactors, prosthetic groups, and carriers, Other, Central intermediary metabolism, Nitrogen fixation]. Length = 365

>gnl|CDD|227349 COG5016, COG5016, Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 34/118 (28%), Positives = 61/118 (51%), Gaps = 7/118 (5%)

Query: 253 VSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILA 312
           ++K+L +MG   I + D  G+ TP     +++A+   +PV  + +H H T G A    L 
Sbjct: 161 LAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELPV-PVELHTHATSGMAEMTYLK 219

Query: 313 SLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDF 370
           +++ G+  +D+++S     P + G S   ATE +V  L G G  T +D+  L    ++
Sbjct: 220 AVEAGVDGIDTAIS-----PLSGGTS-QPATETMVAALRGTGYDTGLDLELLEEIAEY 271

Length = 472

>gnl|CDD|130046 TIGR00973, leuA_bact, 2-isopropylmalate synthase, bacterial type

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 65/288 (22%), Positives = 124/288 (43%), Gaps = 29/288 (10%)

Query: 98  VKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVM 157
           + I +   RDG Q+    +    K+++   L   G+ ++EA   VS        D + V 
Sbjct: 2   IIIFDTTLRDGEQSPGASLTVEEKLQIALALERLGVDIIEAGFPVSSP-----GDFEAVQ 56

Query: 158 AAIQNVEGARFPVLTPNLKG-----FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSL 212
              + V+  R   L   ++       EA   A    +  F + S    +  +  T ++ L
Sbjct: 57  RIARTVKNPRVCGLARCVEKDIDAAAEALKPAEKFRIHTFIATSPIHLEHKLKMTRDEVL 116

Query: 213 IRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIG 272
            R   +   A+  +  V         C   G      +A + +   + G + I++ DT+G
Sbjct: 117 ERAVGMVKYAKNFTDDVE------FSCEDAGRTEIPFLARIVEAAINAGATTINIPDTVG 170

Query: 273 VGTPGTVIPMLEAVLDAVP-VDK--LAVHFHDTYGQALSNILASLQMGISTVDSSVSGLG 329
              P     +++ + + VP +DK  L+VH H+  G A++N LA++Q G   V+ +++G+G
Sbjct: 171 YALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVANSLAAVQNGARQVECTINGIG 230

Query: 330 GCPYAKGASGNVATEDVVYML----NGLGVRTNVDIRKLMIAGDFICK 373
                   +GN A E+VV  L    + LGV T ++ +++      + +
Sbjct: 231 ------ERAGNAALEEVVMALKVRKDFLGVETGINTKEIYRTSRLVSQ 272

This is the first enzyme of leucine biosynthesis. A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes [Amino acid biosynthesis, Pyruvate family]. Length = 494

>gnl|CDD|233273 TIGR01108, oadA, oxaloacetate decarboxylase alpha subunit

 Score = 57.5 bits (139), Expect = 5e-09
 Identities = 29/118 (24%), Positives = 57/118 (48%), Gaps = 7/118 (5%)

Query: 253 VSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILA 312
           ++++L +MG   I + D  G+ TP     ++ A+     +  + +H H T G A   +L 
Sbjct: 154 LAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRFGL-PVHLHSHATTGMAEMALLK 212

Query: 313 SLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDF 370
           +++ G   +D+++S +       G + +  TE +V  L G G  T +DI  L+    +
Sbjct: 213 AIEAGADGIDTAISSM------SGGTSHPPTETMVAALRGTGYDTGLDIELLLEIAAY 264

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane [Transport and binding proteins, Cations and iron carrying compounds, Energy metabolism, Other]. Length = 582

>gnl|CDD|236449 PRK09282, PRK09282, pyruvate carboxylase subunit B; Validated

 Score = 57.5 bits (140), Expect = 5e-09
 Identities = 35/118 (29%), Positives = 57/118 (48%), Gaps = 13/118 (11%)

Query: 255 KQLYDMGCSEISLGDTIGVGTP---GTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNIL 311
           K+L +MGC  I + D  G+ TP     ++  L+  +D +PV    +H H T G A    L
Sbjct: 161 KELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEVD-LPVQ---LHSHCTSGLAPMTYL 216

Query: 312 ASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGD 369
            +++ G+  +D+++S     P A G S    TE +V  L G    T +D+  L    +
Sbjct: 217 KAVEAGVDIIDTAIS-----PLAFGTS-QPPTESMVAALKGTPYDTGLDLELLFEIAE 268

Length = 592

>gnl|CDD|163678 cd07940, DRE_TIM_IPMS, 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain

 Score = 54.4 bits (132), Expect = 3e-08
 Identities = 33/113 (29%), Positives = 61/113 (53%), Gaps = 12/113 (10%)

Query: 259 DMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDK--LAVHFHDTYGQALSNILASLQM 316
           + G + I++ DT+G  TP     +++ + + VP  K  ++VH H+  G A++N LA+++ 
Sbjct: 154 EAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEA 213

Query: 317 GISTVDSSVSGLGGCPYAKGASGNVATEDVV----YMLNGLGVRTNVDIRKLM 365
           G   V+ +++G+G        +GN A E+VV       +  GV T +D  +L 
Sbjct: 214 GARQVECTINGIG------ERAGNAALEEVVMALKTRYDYYGVETGIDTEELY 260

2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-hydroxy-1,2,6- hexanetricarboxylic acid. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 268

>gnl|CDD|183445 PRK12330, PRK12330, oxaloacetate decarboxylase; Provisional

 Score = 54.8 bits (132), Expect = 3e-08
 Identities = 38/144 (26%), Positives = 71/144 (49%), Gaps = 14/144 (9%)

Query: 254 SKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVD-KLAVHFHDTYGQALSNILA 312
           +K+L DMG   I + D   +  P     +++ + +A   D ++ +H H T G  L +++ 
Sbjct: 161 AKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMK 220

Query: 313 SLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFIC 372
           +++ G+  VD+++S +   P      G+  TE +V ML G G  T +D+ +L+   D   
Sbjct: 221 AIEAGVDVVDTAISSMSLGP------GHNPTESLVEMLEGTGYTTKLDMDRLLKIRDHFK 274

Query: 373 KHLGR-------TSGSKTAIALSK 389
           K   +       T+G +T I  S+
Sbjct: 275 KVRPKYKEFESKTTGVETEIFKSQ 298

Length = 499

>gnl|CDD|183446 PRK12331, PRK12331, oxaloacetate decarboxylase; Provisional

 Score = 53.9 bits (130), Expect = 6e-08
 Identities = 36/112 (32%), Positives = 60/112 (53%), Gaps = 7/112 (6%)

Query: 253 VSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILA 312
           ++K++ +MG   I + D  G+ TP     +++ + +AV V  L VH H T G A    L 
Sbjct: 159 LAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVTV-PLEVHTHATSGIAEMTYLK 217

Query: 313 SLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKL 364
           +++ G   +D+++S     P+A G S   ATE +V  L  LG  T +D+ +L
Sbjct: 218 AIEAGADIIDTAIS-----PFAGGTS-QPATESMVAALQDLGYDTGLDLEEL 263

Length = 448

>gnl|CDD|163684 cd07947, DRE_TIM_Re_CS, Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain

 Score = 53.1 bits (128), Expect = 7e-08
 Identities = 52/205 (25%), Positives = 89/205 (43%), Gaps = 25/205 (12%)

Query: 165 GARFPVLT----PNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVAL 220
           G +FP +T     N +  +     G KE  I  S S+      +  T E+++ +Y ++  
Sbjct: 63  GYKFPEVTGWIRANKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVE 122

Query: 221 AARELSIPVRGYLSCVVGCPVEGMVPP--SKVAYVSKQLYDMGCSEISLGDTIGVGTP-- 276
            A +  I  R +L  +    + G V P  +K+  +SK+   +    I L DT+G G P  
Sbjct: 123 EALDHGIKPRCHLEDITRADIYGFVLPFVNKLMKLSKE-SGIPVK-IRLCDTLGYGVPYP 180

Query: 277 GTVIP--------MLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGL 328
           G  +P         L      VP + L  H H+ + +A++N +A+   G S V+ ++ G+
Sbjct: 181 GASLPRSVPKIIYGLRKDCG-VPSENLEWHGHNDFYKAVANAVAAWLYGASWVNCTLLGI 239

Query: 329 GGCPYAKGASGNVATEDVVYMLNGL 353
           G        +GN   E +V     L
Sbjct: 240 G------ERTGNCPLEAMVIEYAQL 258

Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 279

>gnl|CDD|163683 cd07945, DRE_TIM_CMS, Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain

 Score = 52.8 bits (127), Expect = 8e-08
 Identities = 51/190 (26%), Positives = 84/190 (44%), Gaps = 20/190 (10%)

Query: 181 AVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCP 240
             +AGAK + +    S       +  T E+     R+V   A +  I V  YL       
Sbjct: 83  IKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYL------- 135

Query: 241 VE----GMV-PPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKL 295
            E    GM   P  V  +   L D+    I L DT+G+ +P      +  ++   P    
Sbjct: 136 -EDWSNGMRDSPDYVFQLVDFLSDLPIKRIMLPDTLGILSPFETYTYISDMVKRYPNLHF 194

Query: 296 AVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNG-LG 354
             H H+ Y  A++N+LA+++ GI  + ++V+GLG        +GN     V+ +L   L 
Sbjct: 195 DFHAHNDYDLAVANVLAAVKAGIKGLHTTVNGLG------ERAGNAPLASVIAVLKDKLK 248

Query: 355 VRTNVDIRKL 364
           V+TN+D ++L
Sbjct: 249 VKTNIDEKRL 258

Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 280

>gnl|CDD|163677 cd07939, DRE_TIM_NifV, Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain

 Score = 52.5 bits (127), Expect = 1e-07
 Identities = 51/192 (26%), Positives = 82/192 (42%), Gaps = 22/192 (11%)

Query: 178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPV---RG-YL 233
            EAA+  G   V I      S   S+I+  +   L + R   L      +     RG ++
Sbjct: 75  IEAALRCGVTAVHI------SIPVSDIH--LAHKLGKDRAWVLDQLRRLVGRAKDRGLFV 126

Query: 234 SCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVD 293
           S  VG        P  +   ++   + G   +   DT+G+  P T   ++  +  A  + 
Sbjct: 127 S--VGAEDASRADPDFLIEFAEVAQEAGADRLRFADTVGILDPFTTYELIRRLRAATDLP 184

Query: 294 KLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGL 353
            L  H H+  G A +N LA+++ G + V  +V+GLG        +GN A E+VV  L  L
Sbjct: 185 -LEFHAHNDLGLATANTLAAVRAGATHVSVTVNGLG------ERAGNAALEEVVMALKHL 237

Query: 354 -GVRTNVDIRKL 364
            G  T +D  +L
Sbjct: 238 YGRDTGIDTTRL 249

FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 259

>gnl|CDD|163685 cd07948, DRE_TIM_HCS, Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 58/243 (23%), Positives = 103/243 (42%), Gaps = 33/243 (13%)

Query: 98  VKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATS-FVSPKWVPQLADAKDV 156
            KI++   R+G Q          K+E+ K L + G+  +E TS   SP+       ++  
Sbjct: 1   FKIIDSTLREGEQFANAFFDTEDKIEIAKALDAFGVDYIELTSPAASPQ-------SRAD 53

Query: 157 MAAIQNVEGARFPVLTP---NLKGFEAAVAAGAKEVAIFASASE-----SFSKSNINCTI 208
             AI  + G +  +LT    ++     AV  G   V +    S      S  KS I   I
Sbjct: 54  CEAIAKL-GLKAKILTHIRCHMDDARIAVETGVDGVDLVFGTSPFLREASHGKS-ITEII 111

Query: 209 EDSLIRYRDVALAARELSIPVRGYLSC--VVGCPVEGMVPPSKVAYVSKQLYDMGCSEIS 266
           E +     +V    +   I VR   S        +  ++       V + +  +G + + 
Sbjct: 112 ESA----VEVIEFVKSKGIEVR--FSSEDSFRSDLVDLLR------VYRAVDKLGVNRVG 159

Query: 267 LGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVS 326
           + DT+G+ TP  V  ++  +   V  D +  H H+  G A++N  A+L+ G + +D++V 
Sbjct: 160 IADTVGIATPRQVYELVRTLRGVVSCD-IEFHGHNDTGCAIANAYAALEAGATHIDTTVL 218

Query: 327 GLG 329
           G+G
Sbjct: 219 GIG 221

Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 262

>gnl|CDD|233719 TIGR02090, LEU1_arch, isopropylmalate/citramalate/homocitrate synthases

 Score = 51.3 bits (123), Expect = 4e-07
 Identities = 66/277 (23%), Positives = 116/277 (41%), Gaps = 36/277 (12%)

Query: 98  VKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATS-------FVSPKWVPQL 150
           V I +   RDG Q     +    KVE+ + L   G+ V+EA         F + K + Q 
Sbjct: 1   VYIFDTTLRDGEQTPGVSLTVEQKVEIARKLDELGVDVIEAGFPIASEGEFEAIKKISQE 60

Query: 151 ADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIED 210
               ++ +  + ++           K  + A+  G   +  F + S    K  +  + ++
Sbjct: 61  GLNAEICSLARALK-----------KDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDE 109

Query: 211 SLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDT 270
            L +  +    A+E  + V           ++ ++       V K+  + G   I++ DT
Sbjct: 110 VLEKAVEAVEYAKEHGLIVEFSAEDATRTDIDFLIK------VFKRAEEAGADRINIADT 163

Query: 271 IGVGTPGTVIPMLEAVLDAVPVDKL--AVHFHDTYGQALSNILASLQMGISTVDSSVSGL 328
           +GV TP     M E +       KL  +VH H+ +G A +N +A ++ G   V  +V+G+
Sbjct: 164 VGVLTPQK---MEELIKKLKENVKLPISVHCHNDFGLATANSIAGVKAGAEQVHVTVNGI 220

Query: 329 GGCPYAKGASGNVATEDVVYMLNGL-GVRTNVDIRKL 364
           G        +GN A E+VV  L  L GV+T +   KL
Sbjct: 221 G------ERAGNAALEEVVMALKYLYGVKTKIKTEKL 251

Methanogenic archaea contain three closely related homologs of the 2-isopropylmalate synthases (LeuA) represented by TIGR00973. Two of these in Methanococcus janaschii (MJ1392 - CimA ; MJ0503 - AksA ) have been characterized as catalyzing alternative reactions leaving the third (MJ1195) as the presumptive LeuA enzyme. CimA is citramalate (2-methylmalate) synthase which condenses acetyl-CoA with pyruvate. This enzyme is believed to be involved in the biosynthesis of isoleucine in methanogens and possibly other species lacking threonine dehydratase. AksA is a homocitrate synthase which also produces (homo)2-citrate and (homo)3-citrate in the biosynthesis of Coenzyme B which is restricted solely to methanogenic archaea. Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes. Length = 363

>gnl|CDD|181282 PRK08195, PRK08195, 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated

 Score = 51.0 bits (123), Expect = 5e-07
 Identities = 41/127 (32%), Positives = 68/127 (53%), Gaps = 7/127 (5%)

Query: 244 MVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVD-KLAVHFHDT 302
           M PP K+A  +K +   G   + + D+ G   P  V   + A+  A+  D ++  H H+ 
Sbjct: 140 MAPPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFHGHNN 199

Query: 303 YGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIR 362
            G  ++N LA+++ G + +D S++GLG      GA GN   E +V +L+ +G  T VD+ 
Sbjct: 200 LGLGVANSLAAVEAGATRIDGSLAGLGA-----GA-GNTPLEVLVAVLDRMGWETGVDLY 253

Query: 363 KLMIAGD 369
           KLM A +
Sbjct: 254 KLMDAAE 260

Length = 337

>gnl|CDD|178767 PLN03228, PLN03228, methylthioalkylmalate synthase; Provisional

 Score = 51.5 bits (123), Expect = 5e-07
 Identities = 49/210 (23%), Positives = 88/210 (41%), Gaps = 24/210 (11%)

Query: 178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVV 237
           +EA   A    +  F S S+   K  +  T E+ +         A+ L     G+     
Sbjct: 174 WEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSL-----GFHDIQF 228

Query: 238 GCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVP-VDK-- 294
           GC   G      +  +  +    G + + + DT+G+  P     ++  V    P +D   
Sbjct: 229 GCEDGGRSDKEFLCKILGEAIKAGATSVGIADTVGINMPHEFGELVTYVKANTPGIDDIV 288

Query: 295 LAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVV------- 347
            +VH H+  G A +N +A +  G   V+ +++G+G        SGN + E+VV       
Sbjct: 289 FSVHCHNDLGLATANTIAGICAGARQVEVTINGIG------ERSGNASLEEVVMALKCRG 342

Query: 348 -YMLNGLGVRTNVDIRKLMIAGDFICKHLG 376
            Y++N  GV T +D R++M     + ++ G
Sbjct: 343 AYLMN--GVYTGIDTRQIMATSKMVQEYTG 370

Length = 503

>gnl|CDD|237593 PRK14041, PRK14041, oxaloacetate decarboxylase; Provisional

 Score = 50.9 bits (122), Expect = 6e-07
 Identities = 34/123 (27%), Positives = 57/123 (46%), Gaps = 11/123 (8%)

Query: 253 VSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLD--AVPVDKLAVHFHDTYGQALSNI 310
            +++L DMG   I + D  G+ TP     +++A+     VPV+   VH H T G A    
Sbjct: 158 FARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKFGVPVE---VHSHCTTGLASLAY 214

Query: 311 LASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDF 370
           LA+++ G    D+++S     P++ G S     E + Y     G  T+ D + L    ++
Sbjct: 215 LAAVEAGADMFDTAIS-----PFSMGTS-QPPFESMYYAFRENGKETDFDRKALKFLVEY 268

Query: 371 ICK 373
             K
Sbjct: 269 FTK 271

Length = 467

>gnl|CDD|237592 PRK14040, PRK14040, oxaloacetate decarboxylase; Provisional

 Score = 50.7 bits (122), Expect = 8e-07
 Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 14/122 (11%)

Query: 253 VSKQLYDMGCSEISLGDTIGVGTPGT---VIPMLEAVLDAVPVDKLAVHFHDTYGQALSN 309
           ++KQL DMG   + + D  G+  P     ++  ++  +D VP   L +H H T G + + 
Sbjct: 160 LAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRVD-VP---LHLHCHATTGLSTAT 215

Query: 310 ILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLM-IAG 368
           +L +++ GI  VD+++S +    Y     G+ ATE +V  L G    T +DI KL  IA 
Sbjct: 216 LLKAIEAGIDGVDTAISSM-SMTY-----GHSATETLVATLEGTERDTGLDILKLEEIAA 269

Query: 369 DF 370
            F
Sbjct: 270 YF 271

Length = 593

>gnl|CDD|163682 cd07944, DRE_TIM_HOA_like, 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain

 Score = 49.9 bits (120), Expect = 8e-07
 Identities = 26/112 (23%), Positives = 56/112 (50%), Gaps = 11/112 (9%)

Query: 265 ISLGDTIGVGTPGTVIPMLEAVLDAVPVD-KLAVHFHDTYGQALSNILASLQMGISTVDS 323
             + D+ G   P  +  ++  +   +  D KL  H H+    AL+N L ++++G+  +D+
Sbjct: 155 FYIVDSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIIDA 214

Query: 324 SVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHL 375
           +V G+G     +GA GN+ TE ++  LN        ++  ++   + I +++
Sbjct: 215 TVYGMG-----RGA-GNLPTELLLDYLNNK-FGKKYNLEPVL---ELIDEYI 256

This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 266

>gnl|CDD|236493 PRK09389, PRK09389, (R)-citramalate synthase; Provisional

 Score = 50.3 bits (121), Expect = 1e-06
 Identities = 30/107 (28%), Positives = 55/107 (51%), Gaps = 8/107 (7%)

Query: 259 DMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGI 318
           + G   I   DT+G+ TP     + + + + V    +++H H+ +G A++N LA+L  G 
Sbjct: 154 EAGADRICFCDTVGILTPEKTYELFKRLSELVKG-PVSIHCHNDFGLAVANTLAALAAGA 212

Query: 319 STVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGL-GVRTNVDIRKL 364
             V  +++G+G        +GN + E+VV  L  L  V T + + +L
Sbjct: 213 DQVHVTINGIG------ERAGNASLEEVVMALKHLYDVETGIKLEEL 253

Length = 488

>gnl|CDD|162728 TIGR02146, LysS_fung_arch, homocitrate synthase

 Score = 44.8 bits (106), Expect = 4e-05
 Identities = 47/231 (20%), Positives = 90/231 (38%), Gaps = 24/231 (10%)

Query: 106 RDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEAT-------SFVSPKWVPQLADAKDVMA 158
           R+G Q          K+E+ K L   G+  +E T       S +  + +  L    +++ 
Sbjct: 7   REGEQFPGANFSTEQKIEIAKALDEFGIDYIEVTHPAASKQSRIDIEIIASLGLKANIVT 66

Query: 159 AIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDV 218
            I+             L   + AV  G   + IF   S+    +      +  L   R+ 
Sbjct: 67  HIRCR-----------LDDAKVAVELGVDGIDIFFGTSKLLRIAEHRSDAKSILESARET 115

Query: 219 ALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGT 278
              A+   + VR   S       E     + +  + + +   G   + + DT+G   P  
Sbjct: 116 IEYAKSAGLEVR--FSAEDTFRSEL----ADLLSIYETVGVFGVDRVGIADTVGKAAPRQ 169

Query: 279 VIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLG 329
           V  ++  V+  VP   + +H H+  G A++N   +++ G + VD++V G+G
Sbjct: 170 VYELIRTVVRVVPGVDIELHAHNDTGCAVANAYNAIEGGATIVDTTVLGIG 220

This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs. Length = 344

>gnl|CDD|234864 PRK00915, PRK00915, 2-isopropylmalate synthase; Validated

 Score = 43.6 bits (104), Expect = 1e-04
 Identities = 39/123 (31%), Positives = 66/123 (53%), Gaps = 19/123 (15%)

Query: 253 VSKQLYDMGCSEISLGDTIGVGTP---GTVIPMLEAVLDAVP-VDK--LAVHFHDTYGQA 306
           V +   D G + I++ DT+G  TP   G +I  L    + VP +DK  ++VH H+  G A
Sbjct: 154 VVEAAIDAGATTINIPDTVGYTTPEEFGELIKTL---RERVPNIDKAIISVHCHNDLGLA 210

Query: 307 LSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLN----GLGVRTNVDIR 362
           ++N LA+++ G   V+ +++G+G     + A GN A E+VV  L       GV T ++  
Sbjct: 211 VANSLAAVEAGARQVECTINGIG-----ERA-GNAALEEVVMALKTRKDIYGVETGINTE 264

Query: 363 KLM 365
           ++ 
Sbjct: 265 EIY 267

Length = 513

>gnl|CDD|163679 cd07941, DRE_TIM_LeuA3, Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain

 Score = 41.7 bits (99), Expect = 4e-04
 Identities = 22/73 (30%), Positives = 41/73 (56%), Gaps = 2/73 (2%)

Query: 258 YDMGCSEISLGDTIGVGT-PGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQM 316
            + G   + L DT G GT P  +  +++ V + +P   L +H H+  G A++N LA+++ 
Sbjct: 161 AEAGADWLVLCDTNG-GTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAAVEA 219

Query: 317 GISTVDSSVSGLG 329
           G + V  +++G G
Sbjct: 220 GATQVQGTINGYG 232

Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM". Length = 273

>gnl|CDD|79056 PRK12581, PRK12581, oxaloacetate decarboxylase; Provisional

 Score = 40.5 bits (94), Expect = 0.001
 Identities = 30/106 (28%), Positives = 51/106 (48%), Gaps = 7/106 (6%)

Query: 255 KQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASL 314
           K+L +MG   I + D  G+ TP     ++  +  A+    L VH H T G +    LA++
Sbjct: 170 KELVEMGADSICIKDMAGILTPKAAKELVSGI-KAMTNLPLIVHTHATSGISQMTYLAAV 228

Query: 315 QMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVD 360
           + G   +D+++S     P+++G S   ATE +   L   G    +D
Sbjct: 229 EAGADRIDTALS-----PFSEGTS-QPATESMYLALKEAGYDITLD 268

Length = 468

>gnl|CDD|172536 PRK14042, PRK14042, pyruvate carboxylase subunit B; Provisional

 Score = 39.7 bits (92), Expect = 0.002
 Identities = 32/120 (26%), Positives = 56/120 (46%), Gaps = 11/120 (9%)

Query: 253 VSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNI-- 310
           + K+L +MGC  I++ D  G+ TP   + +   +  A     L VH H      L++I  
Sbjct: 159 LGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQAT---GLPVHLHSHSTSGLASICH 215

Query: 311 LASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDF 370
             ++  G + +D+++S   G     GAS +  TE +V  L      T +D+  L+   D+
Sbjct: 216 YEAVLAGCNHIDTAISSFSG-----GAS-HPPTEALVAALTDTPYDTELDLNILLEIDDY 269

Length = 596

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	398
PLN02746	347	hydroxymethylglutaryl-CoA lyase	100.0
PRK05692	287	hydroxymethylglutaryl-CoA lyase; Provisional	100.0
cd07938	274	DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase,	100.0
KOG2368	316	consensus Hydroxymethylglutaryl-CoA lyase [Energy	100.0
PRK11858	378	aksA trans-homoaconitate synthase; Reviewed	100.0
TIGR02660	365	nifV_homocitr homocitrate synthase NifV. This fami	100.0
PRK00915	513	2-isopropylmalate synthase; Validated	100.0
TIGR02090	363	LEU1_arch isopropylmalate/citramalate/homocitrate	100.0
PLN03228	503	methylthioalkylmalate synthase; Provisional	100.0
TIGR00973	494	leuA_bact 2-isopropylmalate synthase, bacterial ty	100.0
PRK09389	488	(R)-citramalate synthase; Provisional	100.0
PLN02321	632	2-isopropylmalate synthase	100.0
cd07945	280	DRE_TIM_CMS Leptospira interrogans citramalate syn	100.0
COG0119	409	LeuA Isopropylmalate/homocitrate/citramalate synth	100.0
PRK12344	524	putative alpha-isopropylmalate/homocitrate synthas	100.0
TIGR00977	526	LeuA_rel 2-isopropylmalate synthase/homocitrate sy	100.0
TIGR00970	564	leuA_yeast 2-isopropylmalate synthase, yeast type.	100.0
PRK03739	552	2-isopropylmalate synthase; Validated	100.0
PRK14847	333	hypothetical protein; Provisional	100.0
cd07939	259	DRE_TIM_NifV Streptomyces rubellomurinus FrbC and	100.0
cd07940	268	DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-	100.0
cd07948	262	DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s	100.0
cd03174	265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	100.0
cd07942	284	DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and	100.0
KOG2367	560	consensus Alpha-isopropylmalate synthase/homocitra	100.0
cd07947	279	DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synt	100.0
cd07943	263	DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te	100.0
cd07941	273	DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3	100.0
cd07937	275	DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar	100.0
PRK08195	337	4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac	100.0
PRK12330	499	oxaloacetate decarboxylase; Provisional	100.0
PRK12331	448	oxaloacetate decarboxylase; Provisional	100.0
cd07944	266	DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-	100.0
TIGR03217	333	4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase.	100.0
PRK14041	467	oxaloacetate decarboxylase; Provisional	100.0
PRK09282	592	pyruvate carboxylase subunit B; Validated	100.0
PF00682	237	HMGL-like: HMGL-like of this family is not conserv	100.0
PRK14040	593	oxaloacetate decarboxylase; Provisional	100.0
TIGR01108	582	oadA oxaloacetate decarboxylase alpha subunit. Thi	100.0
PRK12581	468	oxaloacetate decarboxylase; Provisional	100.0
PRK14042	596	pyruvate carboxylase subunit B; Provisional	100.0
PRK12999	1146	pyruvate carboxylase; Reviewed	100.0
TIGR02146	344	LysS_fung_arch homocitrate synthase. This model in	100.0
COG5016	472	Pyruvate/oxaloacetate carboxyltransferase [Energy	100.0
TIGR01235	1143	pyruv_carbox pyruvate carboxylase. This enzyme pla	100.0
COG1038	1149	PycA Pyruvate carboxylase [Energy production and c	99.97
KOG0369	1176	consensus Pyruvate carboxylase [Energy production	99.95
TIGR02146	344	LysS_fung_arch homocitrate synthase. This model in	98.56
PRK07028	430	bifunctional hexulose-6-phosphate synthase/ribonuc	98.32
TIGR00423	309	radical SAM domain protein, CofH subfamily. This p	98.3
TIGR03699	340	mena_SCO4550 menaquinone biosynthesis protein, SCO	98.26
PRK07094	323	biotin synthase; Provisional	98.2
TIGR03551	343	F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav	98.2
TIGR03700	351	mena_SCO4494 putative menaquinone biosynthesis pro	98.04
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	98.02
PRK06256	336	biotin synthase; Validated	97.97
PRK08445	348	hypothetical protein; Provisional	97.96
PLN02389	379	biotin synthase	97.95
PRK07360	371	FO synthase subunit 2; Reviewed	97.95
PRK09240	371	thiH thiamine biosynthesis protein ThiH; Reviewed	97.9
PRK13125	244	trpA tryptophan synthase subunit alpha; Provisiona	97.87
CHL00200	263	trpA tryptophan synthase alpha subunit; Provisiona	97.86
PLN02591	250	tryptophan synthase	97.85
PRK08444	353	hypothetical protein; Provisional	97.85
PRK15108	345	biotin synthase; Provisional	97.84
TIGR00433	296	bioB biotin synthetase. Catalyzes the last step of	97.75
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	97.74
PRK06552	213	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	97.73
TIGR02351	366	thiH thiazole biosynthesis protein ThiH. Members t	97.72
PRK09613	469	thiH thiamine biosynthesis protein ThiH; Reviewed	97.67
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	97.64
TIGR01182	204	eda Entner-Doudoroff aldolase. 2-deydro-3-deoxypho	97.54
PRK09196	347	fructose-1,6-bisphosphate aldolase; Reviewed	97.45
PRK05927	350	hypothetical protein; Provisional	97.41
cd04726	202	KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxyl	97.41
PRK07315	293	fructose-bisphosphate aldolase; Provisional	97.4
PRK07084	321	fructose-bisphosphate aldolase; Provisional	97.4
PF01081	196	Aldolase: KDPG and KHG aldolase; InterPro: IPR0008	97.37
PRK08508	279	biotin synthase; Provisional	97.35
cd04724	242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	97.35
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	97.35
PRK06015	201	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	97.3
cd00019	279	AP2Ec AP endonuclease family 2; These endonuclease	97.29
TIGR00126	211	deoC deoxyribose-phosphate aldolase. Deoxyribose-p	97.29
PRK05926	370	hypothetical protein; Provisional	97.26
PF00290	259	Trp_syntA: Tryptophan synthase alpha chain; InterP	97.21
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	97.2
TIGR03550	322	F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflav	97.2
PRK08185	283	hypothetical protein; Provisional	97.19
TIGR01521	347	FruBisAldo_II_B fructose-bisphosphate aldolase, cl	97.19
TIGR01859	282	fruc_bis_ald_ fructose-1,6-bisphosphate aldolase,	97.17
PRK13399	347	fructose-1,6-bisphosphate aldolase; Provisional	97.16
PRK06801	286	hypothetical protein; Provisional	97.14
TIGR02109	358	PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E.	97.13
TIGR01163	210	rpe ribulose-phosphate 3-epimerase. This family co	97.09
COG0159	265	TrpA Tryptophan synthase alpha chain [Amino acid t	97.08
TIGR01496	257	DHPS dihydropteroate synthase. This model represen	97.05
PRK09234	843	fbiC FO synthase; Reviewed	97.02
PRK05835	307	fructose-bisphosphate aldolase; Provisional	97.01
PRK09856	275	fructoselysine 3-epimerase; Provisional	97.01
cd00947	276	TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a	97.0
PRK07709	285	fructose-bisphosphate aldolase; Provisional	96.97
PRK06245	336	cofG FO synthase subunit 1; Reviewed	96.97
cd00452	190	KDPG_aldolase KDPG and KHG aldolase. This family b	96.95
PRK08610	286	fructose-bisphosphate aldolase; Reviewed	96.95
cd00959	203	DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of	96.94
COG0826	347	Collagenase and related proteases [Posttranslation	96.93
PTZ00413	398	lipoate synthase; Provisional	96.9
PLN02428	349	lipoic acid synthase	96.89
PRK12928	290	lipoyl synthase; Provisional	96.89
PRK07998	283	gatY putative fructose-1,6-bisphosphate aldolase;	96.88
PRK07114	222	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	96.88
PRK12738	286	kbaY tagatose-bisphosphate aldolase; Reviewed	96.87
PF01116	287	F_bP_aldolase: Fructose-bisphosphate aldolase clas	96.86
PRK15452	443	putative protease; Provisional	96.85
PRK13210	284	putative L-xylulose 5-phosphate 3-epimerase; Revie	96.83
PRK12857	284	fructose-1,6-bisphosphate aldolase; Reviewed	96.82
PRK13397	250	3-deoxy-7-phosphoheptulonate synthase; Provisional	96.81
PRK12737	284	gatY tagatose-bisphosphate aldolase; Reviewed	96.81
TIGR01858	282	tag_bisphos_ald class II aldolase, tagatose bispho	96.79
KOG3111	224	consensus D-ribulose-5-phosphate 3-epimerase [Carb	96.79
PRK00507	221	deoxyribose-phosphate aldolase; Provisional	96.79
TIGR00167	288	cbbA ketose-bisphosphate aldolases. fructose-bisph	96.78
COG0502	335	BioB Biotin synthase and related enzymes [Coenzyme	96.76
cd00958	235	DhnA Class I fructose-1,6-bisphosphate (FBP) aldol	96.76
PRK09195	284	gatY tagatose-bisphosphate aldolase; Reviewed	96.67
PRK05301	378	pyrroloquinoline quinone biosynthesis protein PqqE	96.65
PRK09140	206	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; R	96.64
PRK13398	266	3-deoxy-7-phosphoheptulonate synthase; Provisional	96.62
TIGR03234	254	OH-pyruv-isom hydroxypyruvate isomerase. This enzy	96.58
PRK11613	282	folP dihydropteroate synthase; Provisional	96.57
TIGR01769	205	GGGP geranylgeranylglyceryl phosphate synthase. Th	96.57
COG1060	370	ThiH Thiamine biosynthesis enzyme ThiH and related	96.55
PRK09997	258	hydroxypyruvate isomerase; Provisional	96.54
COG2896	322	MoaA Molybdenum cofactor biosynthesis enzyme [Coen	96.52
PRK13361	329	molybdenum cofactor biosynthesis protein A; Provis	96.49
PRK06806	281	fructose-bisphosphate aldolase; Provisional	96.49
cd04729	219	NanE N-acetylmannosamine-6-phosphate epimerase (Na	96.48
PF04481	242	DUF561: Protein of unknown function (DUF561); Inte	96.43
PRK06267	350	hypothetical protein; Provisional	96.39
PLN02951	373	Molybderin biosynthesis protein CNX2	96.37
cd00331	217	IGPS Indole-3-glycerol phosphate synthase (IGPS);	96.34
PRK09989	258	hypothetical protein; Provisional	96.32
TIGR03470	318	HpnH hopanoid biosynthesis associated radical SAM	96.32
PRK13307	391	bifunctional formaldehyde-activating enzyme/3-hexu	96.3
PRK09197	350	fructose-bisphosphate aldolase; Provisional	96.29
PTZ00170	228	D-ribulose-5-phosphate 3-epimerase; Provisional	96.27
PRK01060	281	endonuclease IV; Provisional	96.26
TIGR00510	302	lipA lipoate synthase. The family shows strong seq	96.23
TIGR02320	285	PEP_mutase phosphoenolpyruvate phosphomutase. A cl	96.22
PRK05481	289	lipoyl synthase; Provisional	96.21
PRK08005	210	epimerase; Validated	96.14
PRK13753	279	dihydropteroate synthase; Provisional	96.12
PRK09722	229	allulose-6-phosphate 3-epimerase; Provisional	96.09
TIGR00735	254	hisF imidazoleglycerol phosphate synthase, cyclase	96.08
smart00518	273	AP2Ec AP endonuclease family 2. These endonuclease	96.04
COG0191	286	Fba Fructose/tagatose bisphosphate aldolase [Carbo	96.04
COG1856	275	Uncharacterized homolog of biotin synthetase [Func	96.02
PRK07226	267	fructose-bisphosphate aldolase; Provisional	96.02
PF01791	236	DeoC: DeoC/LacD family aldolase; InterPro: IPR0029	95.99
PLN02334	229	ribulose-phosphate 3-epimerase	95.97
PRK08883	220	ribulose-phosphate 3-epimerase; Provisional	95.88
PLN02858	1378	fructose-bisphosphate aldolase	95.85
PRK01130	221	N-acetylmannosamine-6-phosphate 2-epimerase; Provi	95.83
COG0274	228	DeoC Deoxyribose-phosphate aldolase [Nucleotide tr	95.8
PRK07535	261	methyltetrahydrofolate:corrinoid/iron-sulfur prote	95.79
TIGR00284	499	dihydropteroate synthase-related protein. This pro	95.76
TIGR02666	334	moaA molybdenum cofactor biosynthesis protein A, b	95.73
PRK08745	223	ribulose-phosphate 3-epimerase; Provisional	95.71
PRK12595	360	bifunctional 3-deoxy-7-phosphoheptulonate synthase	95.69
PRK07455	187	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	95.66
COG0036	220	Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate	95.65
PRK08091	228	ribulose-phosphate 3-epimerase; Validated	95.64
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	95.58
TIGR01949	258	AroFGH_arch predicted phospho-2-dehydro-3-deoxyhep	95.58
COG0800	211	Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Ca	95.56
TIGR03586	327	PseI pseudaminic acid synthase.	95.56
PRK00164	331	moaA molybdenum cofactor biosynthesis protein A; R	95.53
PRK13396	352	3-deoxy-7-phosphoheptulonate synthase; Provisional	95.44
COG0191	286	Fba Fructose/tagatose bisphosphate aldolase [Carbo	95.43
cd00946	345	FBP_aldolase_IIA Class II Type A, Fructose-1,6-bis	95.4
PRK05283	257	deoxyribose-phosphate aldolase; Provisional	95.33
cd00453	340	FTBP_aldolase_II Fructose/tagarose-bisphosphate al	95.31
COG2513	289	PrpB PEP phosphonomutase and related enzymes [Carb	95.28
TIGR01361	260	DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate	95.26
PRK00278	260	trpC indole-3-glycerol-phosphate synthase; Reviewe	95.24
PRK06852	304	aldolase; Validated	95.23
cd00739	257	DHPS DHPS subgroup of Pterin binding enzymes. DHPS	95.15
TIGR02319	294	CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos	95.12
PRK09250	348	fructose-bisphosphate aldolase; Provisional	95.12
smart00729	216	Elp3 Elongator protein 3, MiaB family, Radical SAM	95.12
PRK14057	254	epimerase; Provisional	95.09
TIGR01210	313	conserved hypothetical protein TIGR01210. This fam	95.03
TIGR03471	472	HpnJ hopanoid biosynthesis associated radical SAM	95.02
TIGR03849	237	arch_ComA phosphosulfolactate synthase. This model	94.98
TIGR00539	360	hemN_rel putative oxygen-independent coproporphyri	94.97
cd00423	258	Pterin_binding Pterin binding enzymes. This family	94.95
TIGR01303	475	IMP_DH_rel_1 IMP dehydrogenase family protein. Thi	94.93
COG0320	306	LipA Lipoate synthase [Coenzyme metabolism]	94.92
cd01320	325	ADA Adenosine deaminase (ADA) is a monomeric zinc	94.91
TIGR02317	285	prpB methylisocitrate lyase. Members of this famil	94.87
PRK13209	283	L-xylulose 5-phosphate 3-epimerase; Reviewed	94.86
cd04740	296	DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c	94.78
TIGR00542	279	hxl6Piso_put hexulose-6-phosphate isomerase, putat	94.74
COG1082	274	IolE Sugar phosphate isomerases/epimerases [Carboh	94.74
PRK09234	843	fbiC FO synthase; Reviewed	94.7
PRK08227	264	autoinducer 2 aldolase; Validated	94.68
PRK12858	340	tagatose 1,6-diphosphate aldolase; Reviewed	94.65
PRK11320	292	prpB 2-methylisocitrate lyase; Provisional	94.61
PRK05835	307	fructose-bisphosphate aldolase; Provisional	94.49
PRK12677	384	xylose isomerase; Provisional	94.48
PRK09196	347	fructose-1,6-bisphosphate aldolase; Reviewed	94.44
COG0269	217	SgbH 3-hexulose-6-phosphate synthase and related p	94.44
TIGR01290	442	nifB nitrogenase cofactor biosynthesis protein Nif	94.42
PRK02083	253	imidazole glycerol phosphate synthase subunit HisF	94.42
PRK07709	285	fructose-bisphosphate aldolase; Provisional	94.41
TIGR02026	497	BchE magnesium-protoporphyrin IX monomethyl ester	94.3
TIGR01521	347	FruBisAldo_II_B fructose-bisphosphate aldolase, cl	94.3
PF01261	213	AP_endonuc_2: Xylose isomerase-like TIM barrel; In	94.29
COG0274	228	DeoC Deoxyribose-phosphate aldolase [Nucleotide tr	94.28
PRK09358	340	adenosine deaminase; Provisional	94.27
PRK13347	453	coproporphyrinogen III oxidase; Provisional	94.27
PF01116	287	F_bP_aldolase: Fructose-bisphosphate aldolase clas	94.26
PTZ00170	228	D-ribulose-5-phosphate 3-epimerase; Provisional	94.25
TIGR00538	455	hemN oxygen-independent coproporphyrinogen III oxi	94.23
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	94.2
cd04733	338	OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN	94.17
PF00834	201	Ribul_P_3_epim: Ribulose-phosphate 3 epimerase fam	94.16
PF03102	241	NeuB: NeuB family; InterPro: IPR013132 NeuB is the	94.15
TIGR02668	302	moaA_archaeal probable molybdenum cofactor biosynt	94.14
cd02803	327	OYE_like_FMN_family Old yellow enzyme (OYE)-like F	94.07
cd01335	204	Radical_SAM Radical SAM superfamily. Enzymes of th	94.04
PRK07565	334	dihydroorotate dehydrogenase 2; Reviewed	94.04
KOG4175	268	consensus Tryptophan synthase alpha chain [Amino a	93.99
PRK13523	337	NADPH dehydrogenase NamA; Provisional	93.99
cd04735	353	OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN	93.95
cd00377	243	ICL_PEPM Members of the ICL/PEPM enzyme family cat	93.94
TIGR03551	343	F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflav	93.9
TIGR01579	414	MiaB-like-C MiaB-like tRNA modifying enzyme. This	93.89
cd04732	234	HisA HisA. Phosphoribosylformimino-5-aminoimidazol	93.85
PRK13399	347	fructose-1,6-bisphosphate aldolase; Provisional	93.8
COG2513	289	PrpB PEP phosphonomutase and related enzymes [Carb	93.76
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	93.75
TIGR01858	282	tag_bisphos_ald class II aldolase, tagatose bispho	93.75
PRK00366	360	ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate s	93.72
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	93.72
PRK09249	453	coproporphyrinogen III oxidase; Provisional	93.69
PRK08673	335	3-deoxy-7-phosphoheptulonate synthase; Reviewed	93.67
PRK04180	293	pyridoxal biosynthesis lyase PdxS; Provisional	93.66
TIGR00587	274	nfo apurinic endonuclease (APN1). All proteins in	93.62
cd04728	248	ThiG Thiazole synthase (ThiG) is the tetrameric en	93.61
PLN02623	581	pyruvate kinase	93.6
PRK08446	350	coproporphyrinogen III oxidase; Provisional	93.56
TIGR02320	285	PEP_mutase phosphoenolpyruvate phosphomutase. A cl	93.54
PLN03033	290	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	93.5
cd02933	338	OYE_like_FMN Old yellow enzyme (OYE)-like FMN bind	93.45
cd02810	289	DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD)	93.45
PRK05660	378	HemN family oxidoreductase; Provisional	93.45
PRK00043	212	thiE thiamine-phosphate pyrophosphorylase; Reviewe	93.43
TIGR03700	351	mena_SCO4494 putative menaquinone biosynthesis pro	93.4
PF13714	238	PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB	93.35
TIGR00559	237	pdxJ pyridoxine 5'-phosphate synthase. PdxJ is req	93.29
PF04131	192	NanE: Putative N-acetylmannosamine-6-phosphate epi	93.26
PRK08610	286	fructose-bisphosphate aldolase; Reviewed	93.22
TIGR00612	346	ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-dipho	93.19
TIGR01859	282	fruc_bis_ald_ fructose-1,6-bisphosphate aldolase,	93.04
cd00959	203	DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of	93.04
PRK05628	375	coproporphyrinogen III oxidase; Validated	93.0
PRK12457	281	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	92.98
cd00429	211	RPE Ribulose-5-phosphate 3-epimerase (RPE). This e	92.89
cd00377	243	ICL_PEPM Members of the ICL/PEPM enzyme family cat	92.87
PRK05799	374	coproporphyrinogen III oxidase; Provisional	92.82
TIGR03569	329	NeuB_NnaB N-acetylneuraminate synthase. This famil	92.78
PRK08599	377	coproporphyrinogen III oxidase; Provisional	92.75
TIGR00736	231	nifR3_rel_arch TIM-barrel protein, putative. Membe	92.63
PRK14338	459	(dimethylallyl)adenosine tRNA methylthiotransferas	92.62
PRK08195	337	4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac	92.57
cd04727	283	pdxS PdxS is a subunit of the pyridoxal 5'-phospha	92.56
PRK05581	220	ribulose-phosphate 3-epimerase; Validated	92.53
PRK13813	215	orotidine 5'-phosphate decarboxylase; Provisional	92.51
TIGR01212	302	radical SAM protein, TIGR01212 family. This unchar	92.48
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	92.4
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	92.37
TIGR01211	522	ELP3 histone acetyltransferase, ELP3 family. The S	92.33
PRK05904	353	coproporphyrinogen III oxidase; Provisional	92.32
cd04731	243	HisF The cyclase subunit of imidazoleglycerol phos	92.32
COG1830	265	FbaB DhnA-type fructose-1,6-bisphosphate aldolase	92.3
PRK04165	450	acetyl-CoA decarbonylase/synthase complex subunit	92.29
cd02932	336	OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN	92.28
cd04739	325	DHOD_like Dihydroorotate dehydrogenase (DHOD) like	92.25
cd02930	353	DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-bindin	92.25
COG2100	414	Predicted Fe-S oxidoreductase [General function pr	92.24
PF00701	289	DHDPS: Dihydrodipicolinate synthetase family; Inte	92.24
TIGR00089	429	RNA modification enzyme, MiaB family. This subfami	92.21
PF02679	244	ComA: (2R)-phospho-3-sulfolactate synthase (ComA);	92.21
PRK07094	323	biotin synthase; Provisional	92.14
PF03932	201	CutC: CutC family; InterPro: IPR005627 Copper tran	92.12
COG3623	287	SgaU Putative L-xylulose-5-phosphate 3-epimerase [	92.08
PRK14325	444	(dimethylallyl)adenosine tRNA methylthiotransferas	92.07
TIGR00126	211	deoC deoxyribose-phosphate aldolase. Deoxyribose-p	92.05
PRK06801	286	hypothetical protein; Provisional	92.04
TIGR01430	324	aden_deam adenosine deaminase. This family include	91.91
PRK12738	286	kbaY tagatose-bisphosphate aldolase; Reviewed	91.91
PRK02412	253	aroD 3-dehydroquinate dehydratase; Provisional	91.9
TIGR03822	321	AblA_like_2 lysine-2,3-aminomutase-related protein	91.86
PRK14340	445	(dimethylallyl)adenosine tRNA methylthiotransferas	91.86
PRK14334	440	(dimethylallyl)adenosine tRNA methylthiotransferas	91.84
TIGR03821	321	AblA_like_1 lysine-2,3-aminomutase-related protein	91.84
PRK10605	362	N-ethylmaleimide reductase; Provisional	91.82
PRK06294	370	coproporphyrinogen III oxidase; Provisional	91.77
TIGR01520	357	FruBisAldo_II_A fructose-bisphosphate aldolase, cl	91.74
PRK07259	301	dihydroorotate dehydrogenase 1B; Reviewed	91.74
PTZ00372	413	endonuclease 4-like protein; Provisional	91.72
PRK14332	449	(dimethylallyl)adenosine tRNA methylthiotransferas	91.67
cd00003	234	PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase	91.63
cd00954	288	NAL N-Acetylneuraminic acid aldolase, also called	91.62
TIGR01501	134	MthylAspMutase methylaspartate mutase, S subunit.	91.52
TIGR03217	333	4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase.	91.52
PRK08207	488	coproporphyrinogen III oxidase; Provisional	91.5
PRK12737	284	gatY tagatose-bisphosphate aldolase; Reviewed	91.48
TIGR00343	287	pyridoxal 5'-phosphate synthase, synthase subunit	91.47
TIGR01496	257	DHPS dihydropteroate synthase. This model represen	91.42
cd01321	345	ADGF Adenosine deaminase-related growth factors (A	91.42
PRK08508	279	biotin synthase; Provisional	91.39
PRK13111	258	trpA tryptophan synthase subunit alpha; Provisiona	91.38
cd00952	309	CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate	91.31
PRK14335	455	(dimethylallyl)adenosine tRNA methylthiotransferas	91.28
PF04131	192	NanE: Putative N-acetylmannosamine-6-phosphate epi	91.18
PRK07360	371	FO synthase subunit 2; Reviewed	91.17
PRK13745	412	anaerobic sulfatase-maturase; Provisional	91.08
PRK05265	239	pyridoxine 5'-phosphate synthase; Provisional	91.04
PTZ00314	495	inosine-5'-monophosphate dehydrogenase; Provisiona	91.03
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	90.99
TIGR03581	236	EF_0839 conserved hypothetical protein EF_0839/AHA	90.97
PF04055	166	Radical_SAM: Radical SAM superfamily; InterPro: IP	90.96
TIGR03128	206	RuMP_HxlA 3-hexulose-6-phosphate synthase. at the	90.95
PRK05567	486	inosine 5'-monophosphate dehydrogenase; Reviewed	90.9
PLN02495	385	oxidoreductase, acting on the CH-CH group of donor	90.86
PRK13209	283	L-xylulose 5-phosphate 3-epimerase; Reviewed	90.83
PLN02591	250	tryptophan synthase	90.82
PRK05458	326	guanosine 5'-monophosphate oxidoreductase; Provisi	90.8
cd04734	343	OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN	90.74
cd00947	276	TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) a	90.72
TIGR02317	285	prpB methylisocitrate lyase. Members of this famil	90.71
cd00952	309	CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate	90.69
PRK03170	292	dihydrodipicolinate synthase; Provisional	90.68
cd02072	128	Glm_B12_BD B12 binding domain of glutamate mutase	90.65
cd06556	240	ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme sup	90.59
cd00408	281	DHDPS-like Dihydrodipicolinate synthase family. A	90.59
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	90.55
PRK00112	366	tgt queuine tRNA-ribosyltransferase; Provisional	90.43
PF01702	238	TGT: Queuine tRNA-ribosyltransferase; InterPro: IP	90.41
PRK09195	284	gatY tagatose-bisphosphate aldolase; Reviewed	90.41
TIGR00167	288	cbbA ketose-bisphosphate aldolases. fructose-bisph	90.39
TIGR01302	450	IMP_dehydrog inosine-5'-monophosphate dehydrogenas	90.39
PRK05718	212	keto-hydroxyglutarate-aldolase/keto-deoxy-phosphog	90.35
COG0535	347	Predicted Fe-S oxidoreductases [General function p	90.31
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	90.3
cd00951	289	KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also	90.26
cd04722	200	TIM_phosphate_binding TIM barrel proteins share a	90.2
PRK08208	430	coproporphyrinogen III oxidase; Validated	90.17
PRK08444	353	hypothetical protein; Provisional	90.08
PF00809	210	Pterin_bind: Pterin binding enzyme This Prosite en	89.91
TIGR02313	294	HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac	89.73
PRK02048	611	4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha	89.66
COG2185	143	Sbm Methylmalonyl-CoA mutase, C-terminal domain/su	89.63
PRK12857	284	fructose-1,6-bisphosphate aldolase; Reviewed	89.62
PF01645	368	Glu_synthase: Conserved region in glutamate syntha	89.62
TIGR00683	290	nanA N-acetylneuraminate lyase. N-acetylneuraminat	89.61
PRK14331	437	(dimethylallyl)adenosine tRNA methylthiotransferas	89.49
PRK13533	487	7-cyano-7-deazaguanine tRNA-ribosyltransferase; Pr	89.49
COG2876	286	AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (	89.47
PF03740	239	PdxJ: Pyridoxal phosphate biosynthesis protein Pdx	89.45
TIGR01304	369	IMP_DH_rel_2 IMP dehydrogenase family protein. Thi	89.44
PRK03620	303	5-dehydro-4-deoxyglucarate dehydratase; Provisiona	89.44
PRK07379	400	coproporphyrinogen III oxidase; Provisional	89.39
PRK07084	321	fructose-bisphosphate aldolase; Provisional	89.32
cd00950	284	DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke	89.32
TIGR00674	285	dapA dihydrodipicolinate synthase. Dihydrodipicoli	89.22
PRK14336	418	(dimethylallyl)adenosine tRNA methylthiotransferas	89.08
PRK14041	467	oxaloacetate decarboxylase; Provisional	89.06
TIGR01125	430	MiaB-like tRNA modifying enzyme YliG, TIGR01125. T	89.06
PRK04147	293	N-acetylneuraminate lyase; Provisional	89.0
PRK11572	248	copper homeostasis protein CutC; Provisional	88.95
PRK14327	509	(dimethylallyl)adenosine tRNA methylthiotransferas	88.9
PRK03170	292	dihydrodipicolinate synthase; Provisional	88.87
cd00950	284	DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke	88.84
PRK11320	292	prpB 2-methylisocitrate lyase; Provisional	88.8
cd00956	211	Transaldolase_FSA Transaldolase-like fructose-6-ph	88.8
TIGR02351	366	thiH thiazole biosynthesis protein ThiH. Members t	88.78
TIGR03849	237	arch_ComA phosphosulfolactate synthase. This model	88.74
PF04476	235	DUF556: Protein of unknown function (DUF556); Inte	88.7
PRK13758	370	anaerobic sulfatase-maturase; Provisional	88.7
TIGR03249	296	KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh	88.66
PRK07107	502	inosine 5-monophosphate dehydrogenase; Validated	88.6
TIGR01064	473	pyruv_kin pyruvate kinase. This enzyme is a homote	88.59
TIGR01431	479	adm_rel adenosine deaminase-related growth factor.	88.55
cd07944	266	DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-	88.53
PF13714	238	PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB	88.48
TIGR00674	285	dapA dihydrodipicolinate synthase. Dihydrodipicoli	88.48
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	88.44
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	88.42
PRK11613	282	folP dihydropteroate synthase; Provisional	88.36
PRK09240	371	thiH thiamine biosynthesis protein ThiH; Reviewed	88.36
TIGR03249	296	KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh	88.34
cd00408	281	DHDPS-like Dihydrodipicolinate synthase family. A	88.31
PRK14330	434	(dimethylallyl)adenosine tRNA methylthiotransferas	88.27
TIGR01574	438	miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-3	88.24
PLN02417	280	dihydrodipicolinate synthase	88.22
COG3473	238	Maleate cis-trans isomerase [Secondary metabolites	88.19
PRK14339	420	(dimethylallyl)adenosine tRNA methylthiotransferas	88.11
PF01261	213	AP_endonuc_2: Xylose isomerase-like TIM barrel; In	88.06
COG2100	414	Predicted Fe-S oxidoreductase [General function pr	87.95
TIGR00683	290	nanA N-acetylneuraminate lyase. N-acetylneuraminat	87.95
PRK05283	257	deoxyribose-phosphate aldolase; Provisional	87.95
PF02679	244	ComA: (2R)-phospho-3-sulfolactate synthase (ComA);	87.91
PRK14337	446	(dimethylallyl)adenosine tRNA methylthiotransferas	87.88
TIGR02313	294	HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac	87.86
cd00945	201	Aldolase_Class_I Class I aldolases. The class I al	87.76
PRK09490	1229	metH B12-dependent methionine synthase; Provisiona	87.69
cd04747	361	OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN	87.63
PRK14326	502	(dimethylallyl)adenosine tRNA methylthiotransferas	87.5
TIGR00423	309	radical SAM domain protein, CofH subfamily. This p	87.33
cd02931	382	ER_like_FMN Enoate reductase (ER)-like FMN-binding	87.31
PRK07807	479	inosine 5-monophosphate dehydrogenase; Validated	87.29
PRK00311	264	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	87.21
TIGR01334	277	modD putative molybdenum utilization protein ModD.	87.21
TIGR02321	290	Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f	87.2
PRK06843	404	inosine 5-monophosphate dehydrogenase; Validated	87.17
PLN02389	379	biotin synthase	87.17
cd03174	265	DRE_TIM_metallolyase DRE-TIM metallolyase superfam	87.15
cd06557	254	KPHMT-like Ketopantoate hydroxymethyltransferase (	87.07
PRK00748	233	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	87.05
PRK13210	284	putative L-xylulose 5-phosphate 3-epimerase; Revie	87.02
PRK02227	238	hypothetical protein; Provisional	87.02
cd00954	288	NAL N-Acetylneuraminic acid aldolase, also called	86.97
PRK08255	765	salicylyl-CoA 5-hydroxylase; Reviewed	86.96
PRK09197	350	fructose-bisphosphate aldolase; Provisional	86.77
PF05690	247	ThiG: Thiazole biosynthesis protein ThiG; InterPro	86.71
TIGR03151	307	enACPred_II putative enoyl-(acyl-carrier-protein)	86.68
cd02940	299	DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FM	86.67
PTZ00300	454	pyruvate kinase; Provisional	86.66
PRK15108	345	biotin synthase; Provisional	86.55
cd00381	325	IMPDH IMPDH: The catalytic domain of the inosine m	86.43
TIGR03699	340	mena_SCO4550 menaquinone biosynthesis protein, SCO	86.42
TIGR00284	499	dihydropteroate synthase-related protein. This pro	86.38
TIGR00007	230	phosphoribosylformimino-5-aminoimidazole carboxami	86.38
PRK08185	283	hypothetical protein; Provisional	86.22
PLN02951	373	Molybderin biosynthesis protein CNX2	86.18
PF04551	359	GcpE: GcpE protein; InterPro: IPR004588 This prote	86.17
TIGR02082	1178	metH 5-methyltetrahydrofolate--homocysteine methyl	86.15
PRK07535	261	methyltetrahydrofolate:corrinoid/iron-sulfur prote	86.14
PF09587	250	PGA_cap: Bacterial capsule synthesis protein PGA_c	86.13
PLN02433	345	uroporphyrinogen decarboxylase	86.04
TIGR00432	540	arcsn_tRNA_tgt tRNA-guanine transglycosylase, arch	86.04
PRK05198	264	2-dehydro-3-deoxyphosphooctonate aldolase; Provisi	85.97
cd04724	242	Tryptophan_synthase_alpha Ttryptophan synthase (TR	85.91
TIGR00222	263	panB 3-methyl-2-oxobutanoate hydroxymethyltransfer	85.89
cd04730	236	NPD_like 2-Nitropropane dioxygenase (NPD), one of	85.88
PRK13361	329	molybdenum cofactor biosynthesis protein A; Provis	85.86
cd02801	231	DUS_like_FMN Dihydrouridine synthase-like (DUS-lik	85.83
TIGR00542	279	hxl6Piso_put hexulose-6-phosphate isomerase, putat	85.8
COG0821	361	gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphat	85.79
PRK14328	439	(dimethylallyl)adenosine tRNA methylthiotransferas	85.76
cd06811	382	PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate	85.76
TIGR01362	258	KDO8P_synth 3-deoxy-8-phosphooctulonate synthase.	85.66
TIGR02319	294	CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phos	85.65
PRK08898	394	coproporphyrinogen III oxidase; Provisional	85.64
TIGR01037	300	pyrD_sub1_fam dihydroorotate dehydrogenase (subfam	85.58
COG0854	243	PdxJ Pyridoxal phosphate biosynthesis protein [Coe	85.46
PRK09057	380	coproporphyrinogen III oxidase; Provisional	85.4
TIGR03572	232	WbuZ glycosyl amidation-associated protein WbuZ. T	85.34
TIGR00449	367	tgt_general tRNA-guanine transglycosylases, variou	85.3
TIGR03820	417	lys_2_3_AblA lysine-2,3-aminomutase. This model de	85.19
TIGR02321	290	Pphn_pyruv_hyd phosphonopyruvate hydrolase. This f	85.13
PRK07896	289	nicotinate-nucleotide pyrophosphorylase; Provision	85.12
cd04733	338	OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN	85.07
cd00502	225	DHQase_I Type I 3-dehydroquinase, (3-dehydroquinat	85.05
PRK13585	241	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)met	84.98
PRK05926	370	hypothetical protein; Provisional	84.93
TIGR00433	296	bioB biotin synthetase. Catalyzes the last step of	84.88
PF01729	169	QRPTase_C: Quinolinate phosphoribosyl transferase,	84.81
PRK14329	467	(dimethylallyl)adenosine tRNA methylthiotransferas	84.78
TIGR00262	256	trpA tryptophan synthase, alpha subunit. Tryptopha	84.75
TIGR02631	382	xylA_Arthro xylose isomerase, Arthrobacter type. T	84.69
TIGR02666	334	moaA molybdenum cofactor biosynthesis protein A, b	84.65
PRK09058	449	coproporphyrinogen III oxidase; Provisional	84.52
PRK14024	241	phosphoribosyl isomerase A; Provisional	84.48
PRK06354	590	pyruvate kinase; Provisional	84.48
PRK00164	331	moaA molybdenum cofactor biosynthesis protein A; R	84.42
TIGR01520	357	FruBisAldo_II_A fructose-bisphosphate aldolase, cl	84.36
PRK05927	350	hypothetical protein; Provisional	84.31
PLN02925	733	4-hydroxy-3-methylbut-2-en-1-yl diphosphate syntha	84.29
COG1902	363	NemA NADH:flavin oxidoreductases, Old Yellow Enzym	84.12
PF04273	110	DUF442: Putative phosphatase (DUF442); InterPro: I	84.1
PRK00230	230	orotidine 5'-phosphate decarboxylase; Reviewed	84.07
PRK00115	346	hemE uroporphyrinogen decarboxylase; Validated	84.04
cd00956	211	Transaldolase_FSA Transaldolase-like fructose-6-ph	83.87
cd00405	203	PRAI Phosphoribosylanthranilate isomerase (PRAI) c	83.81
PLN02424	332	ketopantoate hydroxymethyltransferase	83.8

>PLN02746 hydroxymethylglutaryl-CoA lyase

Probab=100.00  E-value=1.1e-76  Score=590.93  Aligned_cols=333  Identities=80%  Similarity=1.201  Sum_probs=316.4

Q ss_pred             CccccCccCCCCCCCccchhhhhhhccCCCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCC
Q 015894           66 NGYLSKAHYSSSCTDNSTKDLTSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPK  145 (398)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~  145 (398)
                      .|+.+.++|.+..+...++.+++++..+||++|+|+|+|||||+|.++..|++++|++|++.|+++||+.||+|+|++|+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~m~~~V~I~DtTlRDG~Q~~g~~~s~e~Ki~ia~~L~~~GV~~IEvGs~vspk   94 (347)
T PLN02746         15 SWSFKEHQYSSSSNEVGVAHMHNKLLKGLPKFVKIVEVGPRDGLQNEKNIVPTSVKVELIQRLVSSGLPVVEATSFVSPK   94 (347)
T ss_pred             ccchhhhccccccccccccccccchhhcCCCceEEEECCCCccCcCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCcc
Confidence            78899999999988889999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCCCHHHHHHHHHhccCCcEEEEeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC
Q 015894          146 WVPQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAREL  225 (398)
Q Consensus       146 ~~p~~~D~~~v~~~i~~~~~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~  225 (398)
                      ++|||.|.+++++.++..++.++.++++|.+|+++|+++|++.|++++++||.|.+.|+|+|++++++.+.+++++||++
T Consensus        95 ~vPqmad~~ev~~~i~~~~~~~~~~l~~n~~die~A~~~g~~~v~i~~s~Sd~h~~~n~~~t~~e~l~~~~~~v~~Ak~~  174 (347)
T PLN02746         95 WVPQLADAKDVMAAVRNLEGARFPVLTPNLKGFEAAIAAGAKEVAVFASASESFSKSNINCSIEESLVRYREVALAAKKH  174 (347)
T ss_pred             cccccccHHHHHHHHHhccCCceeEEcCCHHHHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence            99999999999999988778888899999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccch
Q 015894          226 SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQ  305 (398)
Q Consensus       226 G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~Gl  305 (398)
                      |+.|+++++++||||+.++++++++.++++++.++|+++|+|+||+|+++|.+++++++.+++.+|..+|++|+|||+||
T Consensus       175 Gl~v~~~is~~fg~p~~~r~~~~~l~~~~~~~~~~Gad~I~l~DT~G~a~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~Gl  254 (347)
T PLN02746        175 SIPVRGYVSCVVGCPIEGPVPPSKVAYVAKELYDMGCYEISLGDTIGVGTPGTVVPMLEAVMAVVPVDKLAVHFHDTYGQ  254 (347)
T ss_pred             CCeEEEEEEeeecCCccCCCCHHHHHHHHHHHHHcCCCEEEecCCcCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999877899999999999


Q ss_pred             HHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCCCCCCCccc
Q 015894          306 ALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAI  385 (398)
Q Consensus       306 A~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pi  385 (398)
                      |+||+++|+++||++||+|++|||||||||||+||++||+++++|+.+|++++||+++|.++++++++.+|+++|++...
T Consensus       255 A~AN~lAA~~aGa~~vd~sv~GlGecPfa~graGN~atE~lv~~L~~~G~~tgiDl~~L~~~s~~v~~~~g~~~~~~~~~  334 (347)
T PLN02746        255 ALANILVSLQMGISTVDSSVAGLGGCPYAKGASGNVATEDVVYMLNGLGVSTNVDLGKLMAAGDFISKHLGRPSGSKTAV  334 (347)
T ss_pred             HHHHHHHHHHhCCCEEEEecccccCCCCCCCCCCChhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhCCCChHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999988754


Q ss_pred             ccccccccccCCC
Q 015894          386 ALSKTSTANASKL  398 (398)
Q Consensus       386 vG~~~f~~~~s~~  398 (398)
                      ......+.-+|||
T Consensus       335 ~~~~~~~~~~~~~  347 (347)
T PLN02746        335 ALSARITAAASKI  347 (347)
T ss_pred             HHHhhhccccccC
Confidence            4332222245553

>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional

Probab=100.00  E-value=4.5e-72  Score=547.51  Aligned_cols=287  Identities=63%  Similarity=1.025  Sum_probs=280.4

Q ss_pred             CCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC
Q 015894           94 VPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP  173 (398)
Q Consensus        94 ~p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~  173 (398)
                      ||++|+|+|+|||||+|+++..|++++|++|++.|+++||+.||+|+|++|+|+|++.|.+++++.+.+.+++++.++++
T Consensus         1 m~~~v~I~D~TlRDG~Q~~~~~~s~e~k~~ia~~L~~~Gv~~IEvgsf~~p~~~p~~~d~~e~~~~l~~~~~~~~~~l~~   80 (287)
T PRK05692          1 LPKRVKIVEVGPRDGLQNEKRFIPTADKIALIDRLSAAGLSYIEVASFVSPKWVPQMADAAEVMAGIQRRPGVTYAALTP   80 (287)
T ss_pred             CCCceEEEECCCCccccCcCCCcCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccccccHHHHHHhhhccCCCeEEEEec
Confidence            47789999999999999999999999999999999999999999999999999999999999888888778899999999


Q ss_pred             CHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHH
Q 015894          174 NLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYV  253 (398)
Q Consensus       174 n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~  253 (398)
                      |.+|+++|+++|++.|++++++||.|.+.|+|++++++++.+.+++++||++|+.|+++++++|+||++++++++++.++
T Consensus        81 ~~~~ie~A~~~g~~~v~i~~~~s~~~~~~n~~~~~~e~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~~~~~~~~~~~~~~  160 (287)
T PRK05692         81 NLKGLEAALAAGADEVAVFASASEAFSQKNINCSIAESLERFEPVAEAAKQAGVRVRGYVSCVLGCPYEGEVPPEAVADV  160 (287)
T ss_pred             CHHHHHHHHHcCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEEEEecCCCCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCC
Q 015894          254 SKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPY  333 (398)
Q Consensus       254 a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~  333 (398)
                      ++++.++|+++|+|+||+|.++|.+++++++.+++++|+++|++|+|||+|||+||+++|+++||++||+|++|||||||
T Consensus       161 ~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aG~~~id~s~~GlGecpf  240 (287)
T PRK05692        161 AERLFALGCYEISLGDTIGVGTPGQVRAVLEAVLAEFPAERLAGHFHDTYGQALANIYASLEEGITVFDASVGGLGGCPY  240 (287)
T ss_pred             HHHHHHcCCcEEEeccccCccCHHHHHHHHHHHHHhCCCCeEEEEecCCCCcHHHHHHHHHHhCCCEEEEEccccCCCCC
Confidence            99999999999999999999999999999999999999889999999999999999999999999999999999999999


Q ss_pred             CCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCCCCC
Q 015894          334 AKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSG  380 (398)
Q Consensus       334 a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~~~~  380 (398)
                      ||||+||++||+++.+|+.+|+++++|+++|.++++++++.+|+++|
T Consensus       241 a~g~aGN~~~E~lv~~L~~~g~~t~idl~~l~~~~~~~~~~~~~~~~  287 (287)
T PRK05692        241 APGASGNVATEDVLYMLHGLGIETGIDLDKLVRAGQFIQSKLGRPLP  287 (287)
T ss_pred             CCCccccccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCC
Confidence            99999999999999999999999999999999999999999999987

>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain

Probab=100.00  E-value=9.4e-68  Score=514.14  Aligned_cols=273  Identities=59%  Similarity=0.984  Sum_probs=265.9

Q ss_pred             EEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCCHhhHH
Q 015894          100 IVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNLKGFE  179 (398)
Q Consensus       100 i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n~~~ie  179 (398)
                      |+|+|||||+|.++..|++++|++|++.|+++||+.||+|+|++|+++|++.|.+++++.+...+++++.+|+++.+|++
T Consensus         1 i~D~TlRDG~Q~~~~~~s~e~K~~i~~~L~~~Gv~~IEvGs~~~~~~~p~~~d~~~~~~~l~~~~~~~~~~~~~~~~dv~   80 (274)
T cd07938           1 IVEVGPRDGLQNEKTFIPTEDKIELIDALSAAGLRRIEVTSFVSPKWVPQMADAEEVLAGLPRRPGVRYSALVPNLRGAE   80 (274)
T ss_pred             CeeCCCCCCCcCCCCCcCHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCHHHHHhhcccCCCCEEEEECCCHHHHH
Confidence            58999999999999999999999999999999999999999999999999999988887777666899999999999999


Q ss_pred             HHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHh
Q 015894          180 AAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYD  259 (398)
Q Consensus       180 ~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~  259 (398)
                      +|+++|++.|++++++||.|++.|+|+++++.++.+.+.+++||++|+.|+++++++|+||++++++++++.++++++.+
T Consensus        81 ~A~~~g~~~i~i~~~~Sd~~~~~~~~~s~~~~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~  160 (274)
T cd07938          81 RALAAGVDEVAVFVSASETFSQKNINCSIAESLERFEPVAELAKAAGLRVRGYVSTAFGCPYEGEVPPERVAEVAERLLD  160 (274)
T ss_pred             HHHHcCcCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeEecCCCCCCCCHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCC
Q 015894          260 MGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASG  339 (398)
Q Consensus       260 ~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graG  339 (398)
                      +|+++|+|+||+|.++|.+++++++.+++++|+++|++|+|||+|||+||+++|+++||++||+|++|||+||||++|+|
T Consensus       161 ~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~id~t~~GlGgcpfa~eraG  240 (274)
T cd07938         161 LGCDEISLGDTIGVATPAQVRRLLEAVLERFPDEKLALHFHDTRGQALANILAALEAGVRRFDSSVGGLGGCPFAPGATG  240 (274)
T ss_pred             cCCCEEEECCCCCccCHHHHHHHHHHHHHHCCCCeEEEEECCCCChHHHHHHHHHHhCCCEEEEeccccCCCCCCCCccC
Confidence            99999999999999999999999999999999889999999999999999999999999999999999999999999999


Q ss_pred             CccHHHHHHHHHhCCCCCccChHHHHHHHHHHH
Q 015894          340 NVATEDVVYMLNGLGVRTNVDIRKLMIAGDFIC  372 (398)
Q Consensus       340 Na~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~  372 (398)
                      |++||+++.+|+.+|++++||+++|.+++++++
T Consensus       241 N~~~E~lv~~L~~~g~~t~idl~~l~~~~~~~~  273 (274)
T cd07938         241 NVATEDLVYMLEGMGIETGIDLDKLLAAARWIS  273 (274)
T ss_pred             CcCHHHHHHHHHhcCCCCCcCHHHHHHHHHHHh
Confidence            999999999999999999999999999999886

3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy

>KOG2368 consensus Hydroxymethylglutaryl-CoA lyase [Energy production and conversion; Amino acid transport and metabolism]

Probab=100.00  E-value=2.8e-67  Score=483.93  Aligned_cols=304  Identities=70%  Similarity=1.073  Sum_probs=295.8

Q ss_pred             chhhhhhhccCCCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh
Q 015894           83 TKDLTSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN  162 (398)
Q Consensus        83 ~~~~~~~~~~~~p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~  162 (398)
                      .+.++++.....|++++|+++..|||.|.....+|++.|++++++|.+.|+..||.++|++|+|+|||+|..|++..+++
T Consensus         4 ~~~~s~~a~~t~~~~vkiVEVGpRDGLQnEk~~vpt~vKveLI~~Lse~Gl~~vEtTSFVSpKWVPQl~D~~ev~k~i~~   83 (316)
T KOG2368|consen    4 NRLLSNRAYSTAPKRVKIVEVGPRDGLQNEKNIVPTEVKVELIDRLSECGLQVVETTSFVSPKWVPQLADHNEVMKGIRK   83 (316)
T ss_pred             hHHHHhhhhhcccceeEEEEecCcccccccCccCCchHHHHHHHHHHHcCCceeeeecccCccccccccchHHHHHhhhc
Confidence            35667777888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCcEEEEeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC
Q 015894          163 VEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE  242 (398)
Q Consensus       163 ~~~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~  242 (398)
                      .+++++.+|+||+++++.|+++|+.+|.+|-++||.|...|+||+.+|++.++.++.+.|+++++.|++|++++.|||.+
T Consensus        84 ~~Gv~yPVLtPNlkGf~~AvaaGa~EvavFgaASe~FslkNiNctiees~~rf~~v~kaA~~~ni~vRGYVScvvGCPye  163 (316)
T KOG2368|consen   84 FPGVSYPVLTPNLKGFEAAVAAGAEEVAVFGAASEAFSLKNINCTIEESLKRFMEVLKAAQEHNIRVRGYVSCVVGCPYE  163 (316)
T ss_pred             CCCccccccCcchhhHHHHHhcCceeEEeeehhhhhhhhccCCccHHHHHHHHHHHHHHHHHcCCccceEEEEEecCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD  322 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD  322 (398)
                      +...|+.+.++++.++++||.+|.|.||.|+++|..+.+++..+.+..|...|.+|||||||.|+||.|.+++.|++.+|
T Consensus       164 G~v~P~kVa~V~k~ly~mGCyEiSLGDTIGvGTpgtm~~ML~~Vmk~vPa~~LAVH~HDTYGQALaNiL~slqmGi~vvD  243 (316)
T KOG2368|consen  164 GAVQPSKVAEVVKKLYEMGCYEISLGDTIGVGTPGTMKRMLDAVMKVVPAEKLAVHCHDTYGQALANILVSLQMGIRVVD  243 (316)
T ss_pred             CCcCHHHHHHHHHHHHhCCcEEEecccccccCCchhHHHHHHHHHHhCCHHHhhhhhhhhHHHHHHHHHHHHHhcceehh
Confidence            99999999999999999999999999999999999999999999999997789999999999999999999999999999


Q ss_pred             eccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCCCCCCCcccc
Q 015894          323 SSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIA  386 (398)
Q Consensus       323 ~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~piv  386 (398)
                      .|+.|||+||||+|.+||++||+++++|+.+|++|++|+.+|.++++++.+.+|++-.++.+.+
T Consensus       244 SsvaGLGGCPYAkGAsGN~ATEDlvYmL~GlG~~TgVnL~Klieag~fi~~algr~~~Skva~A  307 (316)
T KOG2368|consen  244 SSVAGLGGCPYAKGASGNLATEDLVYMLNGLGLHTGVNLDKLIEAGDFICKALGRTTWSKVAQA  307 (316)
T ss_pred             hhccccCCCCccccCCCCchHHHHHHHHhcCCcccCcCHHHHHHHHHHHHHHhCCCchhHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999988876544

>PRK11858 aksA trans-homoaconitate synthase; Reviewed

Probab=100.00  E-value=6.5e-65  Score=514.60  Aligned_cols=284  Identities=24%  Similarity=0.335  Sum_probs=263.7

Q ss_pred             CCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEEEeC
Q 015894           95 PGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPVLTP  173 (398)
Q Consensus        95 p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~  173 (398)
                      |++|+|+|||||||+|++++.|++++|++|++.|+++||+.||+|+|...+      +..+.++.+. ...+.++.+|+|
T Consensus         2 ~~~v~I~DtTLRDG~Q~~~~~~s~e~k~~ia~~L~~~GV~~IE~G~p~~~~------~~~e~i~~i~~~~~~~~i~~~~r   75 (378)
T PRK11858          2 PKDIEIVDTTLRDGEQTPGVVFTNEEKLAIARMLDEIGVDQIEAGFPAVSE------DEKEAIKAIAKLGLNASILALNR   75 (378)
T ss_pred             CCeeEEEeCCCCccCcCCCCCCCHHHHHHHHHHHHHhCCCEEEEeCCCcCh------HHHHHHHHHHhcCCCeEEEEEcc
Confidence            467999999999999999999999999999999999999999999865421      2225555554 344677888887


Q ss_pred             C-HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH
Q 015894          174 N-LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAY  252 (398)
Q Consensus       174 n-~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~  252 (398)
                      + .+|+++++++|++.|++++++||.|.+.++|+|++++++.+.+++++||+.|+.|+      |++++.+|++++++.+
T Consensus        76 ~~~~di~~a~~~g~~~i~i~~~~Sd~h~~~~~~~s~~~~l~~~~~~v~~a~~~G~~v~------~~~ed~~r~~~~~l~~  149 (378)
T PRK11858         76 AVKSDIDASIDCGVDAVHIFIATSDIHIKHKLKKTREEVLERMVEAVEYAKDHGLYVS------FSAEDASRTDLDFLIE  149 (378)
T ss_pred             cCHHHHHHHHhCCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE------EEeccCCCCCHHHHHH
Confidence            5 78999999999999999999999999999999999999999999999999999887      3467889999999999


Q ss_pred             HHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCC
Q 015894          253 VSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCP  332 (398)
Q Consensus       253 ~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp  332 (398)
                      +++.+.++|+++|+|+||+|.++|.+++++++.+++++ +++|++|+|||+|||+||+++|+++||++||+|++||||  
T Consensus       150 ~~~~~~~~Ga~~I~l~DT~G~~~P~~v~~lv~~l~~~~-~~~l~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv~GlGe--  226 (378)
T PRK11858        150 FAKAAEEAGADRVRFCDTVGILDPFTMYELVKELVEAV-DIPIEVHCHNDFGMATANALAGIEAGAKQVHTTVNGLGE--  226 (378)
T ss_pred             HHHHHHhCCCCEEEEeccCCCCCHHHHHHHHHHHHHhc-CCeEEEEecCCcCHHHHHHHHHHHcCCCEEEEeeccccc--
Confidence            99999999999999999999999999999999999988 568999999999999999999999999999999999999  


Q ss_pred             CCCCCCCCccHHHHHHHHH-hCCCCCccChHHHHHHHHHHHHHhCCCCCCCcccccccccccccCCC
Q 015894          333 YAKGASGNVATEDVVYMLN-GLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANASKL  398 (398)
Q Consensus       333 ~a~graGNa~lE~vv~~L~-~~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~f~~~~s~~  398 (398)
                          |+||++||+++.+|+ .+|+++++|+++|.++++++++.+|+++|+++||||+++|+ |+|||
T Consensus       227 ----raGNa~lE~vv~~L~~~~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~pivG~~~F~-h~sGi  288 (378)
T PRK11858        227 ----RAGNAALEEVVMALKYLYGIDLGIDTERLYELSRLVSKASGIPVPPNKAIVGENAFA-HESGI  288 (378)
T ss_pred             ----cccCccHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHHHHhCcCCCCCCccccchhhh-hhccc
Confidence                999999999999999 48999999999999999999999999999999999999999 99997

>TIGR02660 nifV_homocitr homocitrate synthase NifV

Probab=100.00  E-value=2.2e-64  Score=508.64  Aligned_cols=281  Identities=24%  Similarity=0.290  Sum_probs=263.1

Q ss_pred             cEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEEEeC-CH
Q 015894           98 VKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPVLTP-NL  175 (398)
Q Consensus        98 I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~-n~  175 (398)
                      |+|+|||||||+|++++.|++++|++|++.|+++||+.||+|+|...+      +.++.++.+. ..++.++.+|+| +.
T Consensus         2 v~i~D~TLRDG~Q~~~~~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~------~~~e~i~~i~~~~~~~~i~~~~r~~~   75 (365)
T TIGR02660         2 VIINDTTLRDGEQAPGVAFTAAEKLAIARALDEAGVDELEVGIPAMGE------EERAVIRAIVALGLPARLMAWCRARD   75 (365)
T ss_pred             cEEEeCCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCH------HHHHHHHHHHHcCCCcEEEEEcCCCH
Confidence            789999999999999999999999999999999999999999875421      1235555555 457789999996 68


Q ss_pred             hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 015894          176 KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSK  255 (398)
Q Consensus       176 ~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~  255 (398)
                      ++++.++++|++.|++++++||.|++.++|+|++++++.+.+++++||++|+.|+      |++++.+|++++++.++++
T Consensus        76 ~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~s~~e~l~~~~~~i~~ak~~g~~v~------~~~ed~~r~~~~~l~~~~~  149 (365)
T TIGR02660        76 ADIEAAARCGVDAVHISIPVSDLQIEAKLRKDRAWVLERLARLVSFARDRGLFVS------VGGEDASRADPDFLVELAE  149 (365)
T ss_pred             HHHHHHHcCCcCEEEEEEccCHHHHHHHhCcCHHHHHHHHHHHHHHHHhCCCEEE------EeecCCCCCCHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999876      5578899999999999999


Q ss_pred             HHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCC
Q 015894          256 QLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAK  335 (398)
Q Consensus       256 ~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~  335 (398)
                      ++.++|+++|+|+||+|.++|.+++++|+.++++++ ++|++|+|||+|||+||+++|+++||++||+|++||||     
T Consensus       150 ~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-v~l~~H~HNd~GlA~ANalaA~~aGa~~vd~tl~GiGe-----  223 (365)
T TIGR02660       150 VAAEAGADRFRFADTVGILDPFSTYELVRALRQAVD-LPLEMHAHNDLGMATANTLAAVRAGATHVNTTVNGLGE-----  223 (365)
T ss_pred             HHHHcCcCEEEEcccCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEEeecccc-----
Confidence            999999999999999999999999999999999886 68999999999999999999999999999999999999     


Q ss_pred             CCCCCccHHHHHHHH-HhCCCCCccChHHHHHHHHHHHHHhCCCCCCCcccccccccccccCCC
Q 015894          336 GASGNVATEDVVYML-NGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANASKL  398 (398)
Q Consensus       336 graGNa~lE~vv~~L-~~~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~f~~~~s~~  398 (398)
                       |+||++||+++.+| ..+|+++++|+.+|.++++++++.+|+++|+++|++|+++|+ |+|||
T Consensus       224 -raGN~~lE~lv~~L~~~~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~p~vG~~~f~-h~sGi  285 (365)
T TIGR02660       224 -RAGNAALEEVAMALKRLLGRDTGIDTSRLPALSQLVARASGRPIPPQKPVVGESVFT-HESGI  285 (365)
T ss_pred             -ccccCCHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHhHHH-hccch
Confidence             99999999999999 568999999999999999999999999999999999999999 99996

This family consists of the NifV clade of homocitrate synthases, most of which are found in operons for nitrogen fixation. Members are closely homologous to enzymes that include 2-isopropylmalate synthase, (R)-citramalate synthase, and homocitrate synthases associated with other processes. The homocitrate made by this enzyme becomes a part of the iron-molybdenum cofactor of nitrogenase.

>PRK00915 2-isopropylmalate synthase; Validated

Probab=100.00  E-value=7e-64  Score=524.40  Aligned_cols=287  Identities=23%  Similarity=0.300  Sum_probs=267.7

Q ss_pred             CCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC
Q 015894           94 VPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP  173 (398)
Q Consensus        94 ~p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~  173 (398)
                      ||++|+|+|||||||+|++++.|++++|++|++.|+++||+.||+|+|.+.+     .|.+.+.+..+..+++++++|+|
T Consensus         1 m~~~v~I~DtTLRDG~Q~~g~~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~s~-----~d~~~v~~i~~~~~~~~i~a~~r   75 (513)
T PRK00915          1 MMDRVIIFDTTLRDGEQSPGASLTVEEKLQIAKQLERLGVDVIEAGFPASSP-----GDFEAVKRIARTVKNSTVCGLAR   75 (513)
T ss_pred             CCCCcEEEECCCCcCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCh-----HHHHHHHHHHhhCCCCEEEEEcc
Confidence            5778999999999999999999999999999999999999999999976431     35555544445667899999997


Q ss_pred             -CHhhHHHHH----HcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHH
Q 015894          174 -NLKGFEAAV----AAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPS  248 (398)
Q Consensus       174 -n~~~ie~a~----~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~  248 (398)
                       +..|++++.    ++|++.|++|+++||.|++.++|+|++++++.+.+++++||++|+.|.      |+++|.+|++++
T Consensus        76 ~~~~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~------f~~ed~~r~d~~  149 (513)
T PRK00915         76 AVKKDIDAAAEALKPAEAPRIHTFIATSPIHMEYKLKMSREEVLEMAVEAVKYARSYTDDVE------FSAEDATRTDLD  149 (513)
T ss_pred             CCHHHHHHHHHHhhcCCCCEEEEEECCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE------EEeCCCCCCCHH
Confidence             478899888    688999999999999999999999999999999999999999999986      678899999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCC---CeEEEEeCCccchHHHHHHHHHHhCCCEEeecc
Q 015894          249 KVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPV---DKLAVHFHDTYGQALSNILASLQMGISTVDSSV  325 (398)
Q Consensus       249 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~---~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv  325 (398)
                      |+.++++.+.++|+++|+||||+|.++|.+++++++.+++++|.   ++|++|+|||+|||+||+++|+++||++||+|+
T Consensus       150 ~l~~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANslaAv~aGa~~Vd~Tv  229 (513)
T PRK00915        150 FLCRVVEAAIDAGATTINIPDTVGYTTPEEFGELIKTLRERVPNIDKAIISVHCHNDLGLAVANSLAAVEAGARQVECTI  229 (513)
T ss_pred             HHHHHHHHHHHcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCcccceEEEEecCCCCHHHHHHHHHHHhCCCEEEEEe
Confidence            99999999999999999999999999999999999999999885   799999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCccHHHHHHHHHhC----CCCCccChHHHHHHHHHHHHHhCCCCCCCcccccccccccccCCC
Q 015894          326 SGLGGCPYAKGASGNVATEDVVYMLNGL----GVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANASKL  398 (398)
Q Consensus       326 ~GlGecp~a~graGNa~lE~vv~~L~~~----Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~f~~~~s~~  398 (398)
                      +||||      |+||++||+++++|+..    |+++++|+++|.++++++++++|+++|+++|+||+++|+ |+|||
T Consensus       230 ~GlGE------RaGNa~lE~vv~~L~~~~~~~g~~~~idl~~l~~~s~~v~~~~~~~~~~~~PivG~~aF~-h~sGi  299 (513)
T PRK00915        230 NGIGE------RAGNAALEEVVMALKTRKDIYGVETGINTEEIYRTSRLVSQLTGMPVQPNKAIVGANAFA-HESGI  299 (513)
T ss_pred             ecccc------cccCccHHHHHHHHHhhhcccCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCccChhHHH-hccch
Confidence            99999      99999999999999753    999999999999999999999999999999999999999 99996

>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases

Probab=100.00  E-value=8.7e-64  Score=503.95  Aligned_cols=281  Identities=23%  Similarity=0.298  Sum_probs=262.4

Q ss_pred             cEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEEEeC-CH
Q 015894           98 VKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPVLTP-NL  175 (398)
Q Consensus        98 I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~-n~  175 (398)
                      |.|+|||||||+|++++.|++++|++|++.|+++||+.||+|+|++++      +..+.++.+. ..+++++.+|+| +.
T Consensus         1 i~i~DtTLRDG~Q~~~~~~s~~~k~~ia~~L~~~Gv~~IEvG~p~~~~------~~~e~i~~i~~~~~~~~v~~~~r~~~   74 (363)
T TIGR02090         1 VYIFDTTLRDGEQTPGVSLTVEQKVEIARKLDELGVDVIEAGFPIASE------GEFEAIKKISQEGLNAEICSLARALK   74 (363)
T ss_pred             CEEEeCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCh------HHHHHHHHHHhcCCCcEEEEEcccCH
Confidence            579999999999999999999999999999999999999999988653      2233444443 445788999997 68


Q ss_pred             hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 015894          176 KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSK  255 (398)
Q Consensus       176 ~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~  255 (398)
                      +|+++++++|++.|++++++||.|.+.+++++++++++.+.+++++||++|+.|+++++      +.++++++++.++++
T Consensus        75 ~di~~a~~~g~~~i~i~~~~Sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~e------da~r~~~~~l~~~~~  148 (363)
T TIGR02090        75 KDIDKAIDCGVDSIHTFIATSPIHLKYKLKKSRDEVLEKAVEAVEYAKEHGLIVEFSAE------DATRTDIDFLIKVFK  148 (363)
T ss_pred             HHHHHHHHcCcCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEEEEEe------ecCCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999874443      678999999999999


Q ss_pred             HHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCC
Q 015894          256 QLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAK  335 (398)
Q Consensus       256 ~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~  335 (398)
                      ++.++|+++|+|+||+|.++|.+++++++.++++++ ++|++|+|||+|||+||+++|+++||++||+|++||||     
T Consensus       149 ~~~~~g~~~i~l~DT~G~~~P~~v~~li~~l~~~~~-~~l~~H~Hnd~GlA~AN~laA~~aGa~~vd~s~~GlGe-----  222 (363)
T TIGR02090       149 RAEEAGADRINIADTVGVLTPQKMEELIKKLKENVK-LPISVHCHNDFGLATANSIAGVKAGAEQVHVTVNGIGE-----  222 (363)
T ss_pred             HHHhCCCCEEEEeCCCCccCHHHHHHHHHHHhcccC-ceEEEEecCCCChHHHHHHHHHHCCCCEEEEEeecccc-----
Confidence            999999999999999999999999999999999988 78999999999999999999999999999999999999     


Q ss_pred             CCCCCccHHHHHHHHHh-CCCCCccChHHHHHHHHHHHHHhCCCCCCCcccccccccccccCCC
Q 015894          336 GASGNVATEDVVYMLNG-LGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANASKL  398 (398)
Q Consensus       336 graGNa~lE~vv~~L~~-~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~f~~~~s~~  398 (398)
                       |+||++||+++++|+. +|+++++|+++|.++++++++.+|+++|+++|++|+++|+ |+|||
T Consensus       223 -raGN~~lE~vv~~L~~~~g~~~~idl~~l~~~~~~~~~~~~~~~~~~~pivG~~~f~-h~sGi  284 (363)
T TIGR02090       223 -RAGNAALEEVVMALKYLYGVKTKIKTEKLYETSRLVSELSGVKVPPNKAIVGENAFA-HESGI  284 (363)
T ss_pred             -ccccccHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHHHHHCcCCCCCCCchhHHHHH-Hhcch
Confidence             9999999999999998 8999999999999999999999999999999999999999 99996

Methanogens, then should and aparrently do contain all three of these enzymes. Unfortunately, phylogenetic trees do not resolve into three unambiguous clades, making assignment of function to particular genes problematic. Other archaea which lack a threonine dehydratase (mainly Euryarchaeota) should contain both a CimA and a LeuA gene. This is true of, for example, archaeoglobus fulgidis, but not for the Pyrococci which have none in this clade, but one in TIGR00973 and one in TIGRT00977 which may fulfill these roles. Other species which have only one hit to this model and lack threonine dehydratase are very likely LeuA enzymes.

>PLN03228 methylthioalkylmalate synthase; Provisional

Probab=100.00  E-value=5.1e-63  Score=513.13  Aligned_cols=286  Identities=21%  Similarity=0.296  Sum_probs=260.3

Q ss_pred             CCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhcc---------C
Q 015894           95 PGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVE---------G  165 (398)
Q Consensus        95 p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~---------~  165 (398)
                      +++|+|+|||||||+|.+++.|+.++|++|++.|+++||+.||+|+|...   |  .|.+.+.+..+..+         .
T Consensus        82 ~~~V~I~DtTLRDGeQ~~gv~fs~eeKi~Ia~~L~~~GVd~IEvG~Pa~s---~--~e~e~i~~i~~~~~~~~~~~~~l~  156 (503)
T PLN03228         82 KNYVRVLDTTLRDGEQSPGGSLTPPQKLEIARQLAKLRVDIMEVGFPGSS---E--EEFEAVKTIAKTVGNEVDEETGYV  156 (503)
T ss_pred             CCCeEEEeCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC---H--HHHHHHHHHHHhcccccccccccc
Confidence            56899999999999999999999999999999999999999999997653   2  23333333323222         1


Q ss_pred             CcEEEEeCC-HhhHHHHHHc----CCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecC
Q 015894          166 ARFPVLTPN-LKGFEAAVAA----GAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIP-VRGYLSCVVGC  239 (398)
Q Consensus       166 ~~l~~l~~n-~~~ie~a~~~----Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~-v~~~l~~~fg~  239 (398)
                      ..+.+|+|. .+|+++++++    |++.|++++++||.|++.++|+|++++++.+.++|++||++|+. |.      |++
T Consensus       157 ~~i~a~~R~~~~dId~a~~a~~~a~~~~V~i~i~~Sd~h~~~kl~~s~ee~l~~~~~~V~~Ak~~G~~~v~------f~~  230 (503)
T PLN03228        157 PVICGIARCKKRDIEAAWEALKYAKRPRILAFTSTSDIHMKYKLKKTKEEVIEMAVSSIRYAKSLGFHDIQ------FGC  230 (503)
T ss_pred             eEEeeecccCHhhHHHHHHhhcccCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEE------ecc
Confidence            466788885 5689999988    77899999999999999999999999999999999999999986 43      789


Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCC---CCeEEEEeCCccchHHHHHHHHHHh
Q 015894          240 PVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVP---VDKLAVHFHDTYGQALSNILASLQM  316 (398)
Q Consensus       240 ~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p---~~~l~~H~Hnd~GlA~ANalaAl~a  316 (398)
                      ||++|++++++.++++.+.++|+++|+|+||+|.++|.+++++|+.+++++|   +++|++|+|||+|||+||+++|+++
T Consensus       231 EDa~Rtd~efl~~~~~~a~~~Gad~I~l~DTvG~~tP~~v~~lV~~l~~~~~~~~~i~I~~H~HND~GlAvANslaAi~a  310 (503)
T PLN03228        231 EDGGRSDKEFLCKILGEAIKAGATSVGIADTVGINMPHEFGELVTYVKANTPGIDDIVFSVHCHNDLGLATANTIAGICA  310 (503)
T ss_pred             ccccccCHHHHHHHHHHHHhcCCCEEEEecCCCCCCHHHHHHHHHHHHHHhccccCceeEecccCCcChHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999886   4779999999999999999999999


Q ss_pred             CCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHh------CCCCCccChHHHHHHHHHHHHHhCCCCCCCcccccccc
Q 015894          317 GISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNG------LGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKT  390 (398)
Q Consensus       317 Ga~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~------~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~  390 (398)
                      ||++||+|++||||      |+||++||+++.+|+.      +|+++++|+++|.++++++++.+|+++|+++|+||+++
T Consensus       311 Ga~~Vd~Tv~GiGE------RaGNa~lEevv~~L~~~~~~~~~g~~t~iDl~~L~~ls~~V~~~~g~~i~~~kPivG~na  384 (503)
T PLN03228        311 GARQVEVTINGIGE------RSGNASLEEVVMALKCRGAYLMNGVYTGIDTRQIMATSKMVQEYTGMYVQPHKPIVGANC  384 (503)
T ss_pred             CCCEEEEecccccc------ccCCccHHHHHHHHHhcccccccCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHHH
Confidence            99999999999999      9999999999999987      48899999999999999999999999999999999999


Q ss_pred             cccccCCC
Q 015894          391 STANASKL  398 (398)
Q Consensus       391 f~~~~s~~  398 (398)
                      |+ |||||
T Consensus       385 F~-heSGI  391 (503)
T PLN03228        385 FV-HESGI  391 (503)
T ss_pred             HH-hccch
Confidence            99 99996

>TIGR00973 leuA_bact 2-isopropylmalate synthase, bacterial type

Probab=100.00  E-value=6.8e-63  Score=514.41  Aligned_cols=284  Identities=24%  Similarity=0.333  Sum_probs=265.8

Q ss_pred             ccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC-CH
Q 015894           97 FVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP-NL  175 (398)
Q Consensus        97 ~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~-n~  175 (398)
                      +|+|+|||||||+|.+++.|++++|++|++.|+++||+.||+|||++++     .|.+.+.+..+..++.++++|+| +.
T Consensus         1 ~v~I~DtTLRDG~Q~~g~~~s~e~K~~ia~~L~~~GV~~IEvG~p~~s~-----~d~e~v~~i~~~~~~~~i~al~r~~~   75 (494)
T TIGR00973         1 RIIIFDTTLRDGEQSPGASLTVEEKLQIALALERLGVDIIEAGFPVSSP-----GDFEAVQRIARTVKNPRVCGLARCVE   75 (494)
T ss_pred             CeEEEECCCCccCcCCCCCcCHHHHHHHHHHHHHcCCCEEEEECCCCCH-----HHHHHHHHHHHhCCCCEEEEEcCCCH
Confidence            4789999999999999999999999999999999999999999998753     46666644445667889999998 57


Q ss_pred             hhHHHHHHc----CCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHH
Q 015894          176 KGFEAAVAA----GAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVA  251 (398)
Q Consensus       176 ~~ie~a~~~----Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~  251 (398)
                      +|+++++++    +.+.|+++.++||.|.+.++++|++++++.+.+++++||++|..|.      |++||++|++++|+.
T Consensus        76 ~did~a~~al~~~~~~~v~i~~~~S~~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~------f~~Ed~~r~d~~~l~  149 (494)
T TIGR00973        76 KDIDAAAEALKPAEKFRIHTFIATSPIHLEHKLKMTRDEVLERAVGMVKYAKNFTDDVE------FSCEDAGRTEIPFLA  149 (494)
T ss_pred             HhHHHHHHhccccCCCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE------EEcCCCCCCCHHHHH
Confidence            899999887    6788999999999999999999999999999999999999999876      678999999999999


Q ss_pred             HHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCC---CCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccC
Q 015894          252 YVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVP---VDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGL  328 (398)
Q Consensus       252 ~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p---~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~Gl  328 (398)
                      ++++.+.++|+++|+||||+|.++|.+++++++.+++++|   .++|++|+|||+|||+||+++|+++||++||+|++||
T Consensus       150 ~~~~~~~~~Ga~~i~l~DTvG~~~P~~~~~~i~~l~~~~~~~~~v~l~~H~HND~GlAvANalaAv~aGa~~vd~tv~Gl  229 (494)
T TIGR00973       150 RIVEAAINAGATTINIPDTVGYALPAEYGNLIKGLRENVPNIDKAILSVHCHNDLGLAVANSLAAVQNGARQVECTINGI  229 (494)
T ss_pred             HHHHHHHHcCCCEEEeCCCCCCCCHHHHHHHHHHHHHhhccccCceEEEEeCCCCChHHHHHHHHHHhCCCEEEEEeecc
Confidence            9999999999999999999999999999999999999987   3679999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCccHHHHHHHHHh----CCCCCccChHHHHHHHHHHHHHhCCCCCCCcccccccccccccCCC
Q 015894          329 GGCPYAKGASGNVATEDVVYMLNG----LGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANASKL  398 (398)
Q Consensus       329 Gecp~a~graGNa~lE~vv~~L~~----~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~f~~~~s~~  398 (398)
                      ||      |+||++||+|+++|+.    +|+++++|++.|.++++++++++|+++|+++|+||+++|+ |+|||
T Consensus       230 GE------RaGNa~le~vv~~L~~~~~~~g~~~~idl~~L~~~s~~v~~~~g~~v~~~~PivG~~aF~-h~sGi  296 (494)
T TIGR00973       230 GE------RAGNAALEEVVMALKVRKDFLGVETGINTKEIYRTSRLVSQLTGMPVQPNKAIVGDNAFA-HESGI  296 (494)
T ss_pred             cc------cccCccHHHHHHHHHHhcccCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHhHHH-hccch
Confidence            99      9999999999999974    4899999999999999999999999999999999999999 99996

A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases found primarily in Bacteria. The homologous families in the Archaea may represent isozymes and/or related enzymes.

>PRK09389 (R)-citramalate synthase; Provisional

Probab=100.00  E-value=1.1e-62  Score=511.97  Aligned_cols=283  Identities=21%  Similarity=0.293  Sum_probs=262.9

Q ss_pred             ccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCC-H
Q 015894           97 FVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPN-L  175 (398)
Q Consensus        97 ~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n-~  175 (398)
                      +|+|+|||||||+|++++.|++++|++|++.|+++||+.||+|+|++++     .|.+.+....+...+.++.+|++. .
T Consensus         2 ~i~I~DtTLRDG~Q~~g~~~s~e~K~~ia~~L~~~Gv~~IE~G~p~~~~-----~d~e~v~~i~~~~~~~~i~a~~r~~~   76 (488)
T PRK09389          2 MVRILDTTLRDGEQTPGVSLTPEEKLEIARKLDELGVDVIEAGSAITSE-----GEREAIKAVTDEGLNAEICSFARAVK   76 (488)
T ss_pred             ceEEEeCCCCCcCCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCcCCH-----HHHHHHHHHHhcCCCcEEEeecccCH
Confidence            4899999999999999999999999999999999999999999998653     344443333334457889999985 6


Q ss_pred             hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 015894          176 KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSK  255 (398)
Q Consensus       176 ~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~  255 (398)
                      +|++++.++|++.|+++.++||.|.+.++++|++++++.+.+++++||++|+.|+++      .++.+|++++|+.++++
T Consensus        77 ~di~~a~~~g~~~v~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~g~~v~~~------~ed~~r~~~~~l~~~~~  150 (488)
T PRK09389         77 VDIDAALECDVDSVHLVVPTSDLHIEYKLKKTREEVLETAVEAVEYAKDHGLIVELS------GEDASRADLDFLKELYK  150 (488)
T ss_pred             HHHHHHHhCCcCEEEEEEccCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEE------EeeCCCCCHHHHHHHHH
Confidence            899999999999999999999999999999999999999999999999999998843      34778999999999999


Q ss_pred             HHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCC
Q 015894          256 QLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAK  335 (398)
Q Consensus       256 ~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~  335 (398)
                      .+.++|+++|+||||+|.++|.+++++++.++++++ ++|++|+|||+|||+||+++|+++||++||+|++||||     
T Consensus       151 ~~~~~Ga~~i~l~DTvG~~~P~~~~~lv~~l~~~~~-v~l~~H~HND~GlAvANalaAv~aGa~~Vd~Ti~GiGE-----  224 (488)
T PRK09389        151 AGIEAGADRICFCDTVGILTPEKTYELFKRLSELVK-GPVSIHCHNDFGLAVANTLAALAAGADQVHVTINGIGE-----  224 (488)
T ss_pred             HHHhCCCCEEEEecCCCCcCHHHHHHHHHHHHhhcC-CeEEEEecCCccHHHHHHHHHHHcCCCEEEEEcccccc-----
Confidence            999999999999999999999999999999998876 68999999999999999999999999999999999999     


Q ss_pred             CCCCCccHHHHHHHHHh-CCCCCccChHHHHHHHHHHHHHhCCCCCCCcccccccccccccCCC
Q 015894          336 GASGNVATEDVVYMLNG-LGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANASKL  398 (398)
Q Consensus       336 graGNa~lE~vv~~L~~-~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~f~~~~s~~  398 (398)
                       |+||++||+++++|+. +|+++++|+++|.++++++++++|+++|+++|+||+++|+ |+|||
T Consensus       225 -RaGNa~lE~lv~~L~~~~g~~~~idl~~l~~~s~~v~~~~~~~v~~~~pivG~~aF~-h~sGi  286 (488)
T PRK09389        225 -RAGNASLEEVVMALKHLYDVETGIKLEELYELSRLVSRLTGIPVPPNKAIVGENAFA-HESGI  286 (488)
T ss_pred             -cccCccHHHHHHHHHhhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCcccHhHHH-hcchh
Confidence             9999999999999997 5999999999999999999999999999999999999999 99996

>PLN02321 2-isopropylmalate synthase

Probab=100.00  E-value=1.9e-62  Score=519.35  Aligned_cols=285  Identities=22%  Similarity=0.321  Sum_probs=261.0

Q ss_pred             CCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCC-CCCcccCCCCHHHHHHHHHhccC--------
Q 015894           95 PGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFV-SPKWVPQLADAKDVMAAIQNVEG--------  165 (398)
Q Consensus        95 p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~-~~~~~p~~~D~~~v~~~i~~~~~--------  165 (398)
                      |++|+|+|||||||+|.++..|++++|++|++.|+++||+.||+|||. +|      .|.+.+....+.+++        
T Consensus        84 ~~~V~I~DtTLRDGeQ~~g~~~s~eeKl~Ia~~L~~lGVd~IEvGfP~~Sp------~D~e~vr~i~~~~~~~v~~~~~v  157 (632)
T PLN02321         84 PNYVRIFDTTLRDGEQSPGATLTSKEKLDIARQLAKLGVDIIEAGFPIASP------DDLEAVKTIAKEVGNEVDEDGYV  157 (632)
T ss_pred             CCceEEEECCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCcCCCc------cHHHHHHHHHHhcccCCCccccc
Confidence            778999999999999999999999999999999999999999999964 44      366654444344333        


Q ss_pred             CcEEEEeC-CHhhHHHHHHc--CC--CEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecC
Q 015894          166 ARFPVLTP-NLKGFEAAVAA--GA--KEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIP-VRGYLSCVVGC  239 (398)
Q Consensus       166 ~~l~~l~~-n~~~ie~a~~~--Gv--~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~-v~~~l~~~fg~  239 (398)
                      ..+++|+| +.+|+++++++  ++  ..|++|+++||.|++.++|+|++++++.+.+++++||++|.. |.      |++
T Consensus       158 ~~i~a~~ra~~~dId~A~~al~~a~~~~I~i~~stSd~h~~~~l~~t~ee~l~~~~~~V~~Ak~~G~~~v~------fs~  231 (632)
T PLN02321        158 PVICGLSRCNKKDIDAAWEAVKHAKRPRIHTFIATSEIHMEHKLRKTPDEVVEIARDMVKYARSLGCEDVE------FSP  231 (632)
T ss_pred             eeeeeehhccHHhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCceEE------Eec
Confidence            45667887 68999999998  44  379999999999999999999999999999999999999984 44      778


Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCC---CeEEEEeCCccchHHHHHHHHHHh
Q 015894          240 PVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPV---DKLAVHFHDTYGQALSNILASLQM  316 (398)
Q Consensus       240 ~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~---~~l~~H~Hnd~GlA~ANalaAl~a  316 (398)
                      ||++|++++|+.++++++.++|+++|+||||+|+++|.+++++|+.+++++|.   ++|++|+|||+|||+||+++|+++
T Consensus       232 EDa~rtd~d~l~~~~~~a~~aGa~~I~L~DTvG~~~P~~v~~li~~l~~~~~~~~~v~i~vH~HND~GlAvANslaAv~A  311 (632)
T PLN02321        232 EDAGRSDPEFLYRILGEVIKAGATTLNIPDTVGYTLPSEFGQLIADIKANTPGIENVIISTHCQNDLGLSTANTLAGAHA  311 (632)
T ss_pred             ccCCCCCHHHHHHHHHHHHHcCCCEEEecccccCCCHHHHHHHHHHHHHhcCCCCCceEEEEeCCCCCHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999874   569999999999999999999999


Q ss_pred             CCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHh------CCCCCccChHHHHHHHHHHHHHhCCCCCCCcccccccc
Q 015894          317 GISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNG------LGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKT  390 (398)
Q Consensus       317 Ga~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~------~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~  390 (398)
                      ||++||+|++||||      |+||++||+|+++|+.      +|+.+++|+++|.++++++++++|+++|+|+|+||+++
T Consensus       312 GA~~Vd~TinGlGE------RaGNa~LEevv~~L~~~~~~~~~g~~tgidl~~L~~~s~~V~~~~g~~v~~~kPiVG~na  385 (632)
T PLN02321        312 GARQVEVTINGIGE------RAGNASLEEVVMAIKCRGDEQLGGLYTGINPVHITPTSKMVSEYTGMQVQPHKAIVGANA  385 (632)
T ss_pred             CCCEEEEecccccc------cccCccHHHHHHHHHhccCccccCcccccCHHHHHHHHHHHHHHhCcCCCCCcccccccc
Confidence            99999999999999      9999999999999975      47899999999999999999999999999999999999


Q ss_pred             cccccCCC
Q 015894          391 STANASKL  398 (398)
Q Consensus       391 f~~~~s~~  398 (398)
                      |+ |+|||
T Consensus       386 Fa-heSGI  392 (632)
T PLN02321        386 FA-HESGI  392 (632)
T ss_pred             ee-hhcCc
Confidence            99 99997

>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain

Probab=100.00  E-value=1.9e-62  Score=478.12  Aligned_cols=274  Identities=24%  Similarity=0.302  Sum_probs=255.3

Q ss_pred             EeCCCcccCCCCCCCCCHHHHHHHHHHH-HhcCCCEEEEecC-CCC---CcccCCCCHHHHHHHHHhccCCcEEEEeCCH
Q 015894          101 VEVGPRDGLQNEKNIVPAVVKVELIKLL-VSSGLAVVEATSF-VSP---KWVPQLADAKDVMAAIQNVEGARFPVLTPNL  175 (398)
Q Consensus       101 ~D~TLRDG~Q~~~~~~~~~~k~~ia~~L-~~aGv~~IEvG~~-~~~---~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n~  175 (398)
                      +|+|||||+|.++..|++++|++|++.| +++||+.||+|+| ++|   +++|++.|..++...   .++.++.+|++|.
T Consensus         1 ~D~TlRDG~Q~~~~~~s~e~K~~i~~~L~~~~Gv~~IEvg~~~~s~~e~~av~~~~~~~~~~~~---~~~~~~~a~~~~~   77 (280)
T cd07945           1 MDTTLRDGEQTSGVSFSPSEKLNIAKILLQELKVDRIEVASARVSEGEFEAVQKIIDWAAEEGL---LDRIEVLGFVDGD   77 (280)
T ss_pred             CCCCCCCcCcCCCCccCHHHHHHHHHHHHHHhCCCEEEecCCCCCHHHHHHHHHHHHHhhhhcc---ccCcEEEEecCcH
Confidence            5999999999999999999999999997 7889999999999 676   666666554332222   2367888899999


Q ss_pred             hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 015894          176 KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSK  255 (398)
Q Consensus       176 ~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~  255 (398)
                      +++++|+++|++.|++++++||.|.+.|+|+|++++++.+.+++++||++|++|+++++. |+||.  |++++++.++++
T Consensus        78 ~~~~~A~~~g~~~i~i~~~~S~~h~~~~~~~t~~e~l~~~~~~i~~a~~~G~~v~~~~~d-~~~~~--r~~~~~~~~~~~  154 (280)
T cd07945          78 KSVDWIKSAGAKVLNLLTKGSLKHCTEQLRKTPEEHFADIREVIEYAIKNGIEVNIYLED-WSNGM--RDSPDYVFQLVD  154 (280)
T ss_pred             HHHHHHHHCCCCEEEEEEeCCHHHHHHHHCcCHHHHHHHHHHHHHHHHhCCCEEEEEEEe-CCCCC--cCCHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999998 88875  789999999999


Q ss_pred             HHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCC
Q 015894          256 QLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAK  335 (398)
Q Consensus       256 ~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~  335 (398)
                      ++.++|+++|+|+||+|.++|.+++++++.+++++|+++|++|+|||+|||+||+++|+++||++||+|++||||     
T Consensus       155 ~~~~~G~~~i~l~DT~G~~~P~~v~~l~~~l~~~~~~~~i~~H~Hnd~Gla~AN~laA~~aGa~~vd~s~~GlGe-----  229 (280)
T cd07945         155 FLSDLPIKRIMLPDTLGILSPFETYTYISDMVKRYPNLHFDFHAHNDYDLAVANVLAAVKAGIKGLHTTVNGLGE-----  229 (280)
T ss_pred             HHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHhhCCCCeEEEEeCCCCCHHHHHHHHHHHhCCCEEEEecccccc-----
Confidence            999999999999999999999999999999999999889999999999999999999999999999999999999     


Q ss_pred             CCCCCccHHHHHHHHHh-CCCCCccChHHHHHHHHHHHHHhCCCCCCCcccc
Q 015894          336 GASGNVATEDVVYMLNG-LGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIA  386 (398)
Q Consensus       336 graGNa~lE~vv~~L~~-~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~piv  386 (398)
                       |+||++||+++.+|+. +|+++++|+++|.++++++++.+|+++|+|+|||
T Consensus       230 -~aGN~~~E~~v~~L~~~~g~~t~idl~~l~~~~~~v~~~~g~~~~~~~piv  280 (280)
T cd07945         230 -RAGNAPLASVIAVLKDKLKVKTNIDEKRLNRASRLVETFSGKRIPANKPIV  280 (280)
T ss_pred             -cccCccHHHHHHHHHHhcCCCcCcCHHHHHHHHHHHHHHhCcCCCCCCCcC
Confidence             9999999999999964 8999999999999999999999999999999996

Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con

>COG0119 LeuA Isopropylmalate/homocitrate/citramalate synthases [Amino acid transport and metabolism]

Probab=100.00  E-value=2.1e-62  Score=498.10  Aligned_cols=284  Identities=29%  Similarity=0.346  Sum_probs=258.9

Q ss_pred             ccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc---cCCcEEEEeC
Q 015894           97 FVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV---EGARFPVLTP  173 (398)
Q Consensus        97 ~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~~  173 (398)
                      +|+|.|+|||||+|.++..|+.++|++|++.|+++|+++||+|+|+++++.+     +.+.......   ..+++.++.+
T Consensus         2 ~v~i~DtTLRDG~Q~~g~~~s~e~Ki~Ia~~Ld~lGv~~IE~g~p~~s~~~~-----~~~~~i~~~~~~~~~~~~~~~~~   76 (409)
T COG0119           2 KVIIFDTTLRDGEQAPGVSFSVEEKIRIAKALDDLGVDYIEAGFPVASPGDF-----EFVRAIAEKAGLFICALIAALAR   76 (409)
T ss_pred             CcEEEeCCCCcCCcCCCCcCCHHHHHHHHHHHHHcCCCEEEEeCCcCChhhH-----HHHHHHHHhcCcccchhhhhhHH
Confidence            6899999999999999999999999999999999999999999999876543     3222222122   2455667777


Q ss_pred             CH-hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH
Q 015894          174 NL-KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAY  252 (398)
Q Consensus       174 n~-~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~  252 (398)
                      +. ++++.++++|++.|++|.++||.|++.++++|+++.++.+.+++++||++|+++++      ++++.+|++++++.+
T Consensus        77 ~~~~~~ea~~~a~~~~i~if~~tSd~h~~~~~~~t~~e~l~~~~~~v~ya~~~g~~~~~------~~Ed~~rt~~~~l~~  150 (409)
T COG0119          77 AIKRDIEALLEAGVDRIHIFIATSDLHLRYKLKKTREEVLERAVDAVEYARDHGLEVRF------SAEDATRTDPEFLAE  150 (409)
T ss_pred             hHHhhHHHHHhCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEE------EeeccccCCHHHHHH
Confidence            65 49999999999999999999999999999999999999999999999999988874      345677999999999


Q ss_pred             HHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCC
Q 015894          253 VSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGC  331 (398)
Q Consensus       253 ~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGec  331 (398)
                      +++.+.++|+++|+|+||+|.++|.+++++++.+++++| ..+|++|+|||+|||+||+++|+++||++||+|++|+|| 
T Consensus       151 ~~~~~~~~ga~~i~l~DTvG~~~P~~~~~~i~~l~~~v~~~~~l~~H~HnD~G~AvANslaAv~aGa~~v~~TvnGiGE-  229 (409)
T COG0119         151 VVKAAIEAGADRINLPDTVGVATPNEVADIIEALKANVPNKVILSVHCHNDLGMAVANSLAAVEAGADQVEGTVNGIGE-  229 (409)
T ss_pred             HHHHHHHcCCcEEEECCCcCccCHHHHHHHHHHHHHhCCCCCeEEEEecCCcchHHHHHHHHHHcCCcEEEEeccccee-
Confidence            999999999999999999999999999999999999998 479999999999999999999999999999999999999 


Q ss_pred             CCCCCCCCCccHHHHHHHHHh---CCCCCccChHHHHHHHHHHHHHhCCCCCCCcccccccccccccCCC
Q 015894          332 PYAKGASGNVATEDVVYMLNG---LGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANASKL  398 (398)
Q Consensus       332 p~a~graGNa~lE~vv~~L~~---~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~f~~~~s~~  398 (398)
                           |+||+++|+++++|..   +|+++++|+.+|.++++++++.+|+++|+|+|+||+++|+ |+|||
T Consensus       230 -----RaGna~l~~v~~~l~~~~~~~~~~~idl~~l~~~s~~v~~~~~~~v~~n~pivG~naFa-h~sGI  293 (409)
T COG0119         230 -----RAGNAALEEVVLALALRKDYGVDTGIDLEKLTEASRLVERLTGIPVPPNKPIVGENAFA-HESGI  293 (409)
T ss_pred             -----ccccccHHHHHHHHHHHhhcCCccCCCHHHHHHHHHHHHHHhCCCCCCCCCchhhHHHH-hhcch
Confidence                 9999999999966653   6789999999999999999999999999999999999999 99996

>PRK12344 putative alpha-isopropylmalate/homocitrate synthase family transferase; Provisional

Probab=100.00  E-value=3.8e-61  Score=504.21  Aligned_cols=286  Identities=19%  Similarity=0.222  Sum_probs=259.3

Q ss_pred             CCCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh--ccCCcEEE
Q 015894           93 RVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN--VEGARFPV  170 (398)
Q Consensus        93 ~~p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~--~~~~~l~~  170 (398)
                      +||++|+|+|||||||+|++++.|++++|++|++.|+++||+.||+|+|....     .|.+ ..+.+..  +.++++++
T Consensus         1 ~~~~~V~I~DtTLRDG~Q~~g~~~s~e~Kl~ia~~L~~~Gvd~IEvG~p~as~-----~d~~-~~~~i~~~~l~~~~i~~   74 (524)
T PRK12344          1 MMMERIELYDTTLRDGAQGEGISFSVEDKLRIARKLDELGVDYIEGGWPGSNP-----KDTE-FFKRAKELKLKHAKLAA   74 (524)
T ss_pred             CCCCceEEEeCCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCCcCCh-----hHHH-HHHHHHHhCCCCcEEEE
Confidence            36788999999999999999999999999999999999999999999975421     2333 3344432  35788888


Q ss_pred             EeCC---------HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCC-
Q 015894          171 LTPN---------LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCP-  240 (398)
Q Consensus       171 l~~n---------~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~-  240 (398)
                      |++.         ..+++.++++|++.|+++.++||.|.+.++|+|+++.++.+.+++++||++|+.|+      |+++ 
T Consensus        75 ~~~~~~~~i~~~~d~~~e~~~~~g~~~i~i~~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~------~~~e~  148 (524)
T PRK12344         75 FGSTRRAGVSAEEDPNLQALLDAGTPVVTIFGKSWDLHVTEALRTTLEENLAMIRDSVAYLKAHGREVI------FDAEH  148 (524)
T ss_pred             EeeccccCCCcccHHHHHHHHhCCCCEEEEEECCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEE------Ecccc
Confidence            8753         34678899999999999999999999999999999999999999999999999987      4455 


Q ss_pred             --CCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCC
Q 015894          241 --VEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGI  318 (398)
Q Consensus       241 --~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa  318 (398)
                        +++|++++++.++++.+.++|+++|+|+||+|+++|.+++++++.+++++ +++|++|+|||+|||+||+++|+++||
T Consensus       149 ~~Da~r~d~~~l~~~~~~~~~~Gad~i~l~DTvG~~~P~~v~~li~~l~~~~-~v~i~~H~HND~GlA~ANslaAi~aGa  227 (524)
T PRK12344        149 FFDGYKANPEYALATLKAAAEAGADWVVLCDTNGGTLPHEVAEIVAEVRAAP-GVPLGIHAHNDSGCAVANSLAAVEAGA  227 (524)
T ss_pred             ccccccCCHHHHHHHHHHHHhCCCCeEEEccCCCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCChHHHHHHHHHHhCC
Confidence              67799999999999999999999999999999999999999999999988 578999999999999999999999999


Q ss_pred             CEEeeccccCCCCCCCCCCCCCccHHHHHHHHHh-CC--CCCccChHHHHHHHHHHHHHhCCCCCCCccccccccccccc
Q 015894          319 STVDSSVSGLGGCPYAKGASGNVATEDVVYMLNG-LG--VRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANA  395 (398)
Q Consensus       319 ~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~-~G--i~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~f~~~~  395 (398)
                      ++||+|++||||      |+||++||+++++|+. +|  ++|++|+++|.++++++++++|+++|+++|+||+++|+ |+
T Consensus       228 ~~Vd~Tl~GlGE------RaGNa~lE~lv~~L~~~~g~~~~t~idl~~l~~is~~v~~~~~~~v~~~~pivG~~~F~-h~  300 (524)
T PRK12344        228 RQVQGTINGYGE------RCGNANLCSIIPNLQLKMGYECLPEEKLKELTEVSRFVSEIANLAPDPHQPYVGASAFA-HK  300 (524)
T ss_pred             CEEEEecccccc------cccCcCHHHHHHHHHhccCCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCeECcchhh-hh
Confidence            999999999999      9999999999999975 67  44899999999999999999999999999999999999 99


Q ss_pred             CCC
Q 015894          396 SKL  398 (398)
Q Consensus       396 s~~  398 (398)
                      |||
T Consensus       301 SGi  303 (524)
T PRK12344        301 GGI  303 (524)
T ss_pred             ccc
Confidence            997

>TIGR00977 LeuA_rel 2-isopropylmalate synthase/homocitrate synthase family protein

Probab=100.00  E-value=4.6e-61  Score=503.17  Aligned_cols=287  Identities=17%  Similarity=0.170  Sum_probs=259.9

Q ss_pred             ccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh-ccCCcEEEEeCC-
Q 015894           97 FVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN-VEGARFPVLTPN-  174 (398)
Q Consensus        97 ~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~~n-  174 (398)
                      +|+|+|||||||+|.++..|++++|++|++.|+++||+.||+|||.+..     .|.+.+.+..+. +.+.++++|+|. 
T Consensus         1 ~V~I~DtTLRDG~Q~~g~~~s~eeKl~Ia~~L~~~GVd~IE~G~p~~s~-----~d~~~v~~i~~~~~~~~~i~~~~r~~   75 (526)
T TIGR00977         1 SLWLYDTTLRDGAQREGVSFSLEDKIRIAERLDDLGIHYIEGGWPGANP-----KDVQFFWQLKEMNFKNAKIVAFCSTR   75 (526)
T ss_pred             CeEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCh-----HHHHHHHHHHHhCCCCcEEEEEeeec
Confidence            4899999999999999999999999999999999999999999876421     244444444432 346889999853 


Q ss_pred             --------HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCC
Q 015894          175 --------LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVP  246 (398)
Q Consensus       175 --------~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~  246 (398)
                              .+++++++++|.+.|++|.++||.|.+.+++++++++++.+.+++++||++|+.|....+..|   |++|++
T Consensus        76 r~~~~~~~d~~~ea~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~g~~V~~~~e~f~---D~~r~~  152 (526)
T TIGR00977        76 RPHKKVEEDKMLQALIKAETPVVTIFGKSWDLHVLEALQTTLEENLAMIYDTVAYLKRQGDEVIYDAEHFF---DGYKAN  152 (526)
T ss_pred             CCCCCCchHHHHHHHhcCCCCEEEEEeCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeee---ecccCC
Confidence                    235789999999999999999999999999999999999999999999999999874444322   567899


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccc
Q 015894          247 PSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVS  326 (398)
Q Consensus       247 ~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~  326 (398)
                      ++|+.++++.+.++|+++|+||||+|+++|.+++++++.+++++|..+|++|+|||+|||+||+++|+++||++||+|++
T Consensus       153 ~~~l~~~~~~a~~aGad~i~i~DTvG~~~P~~v~~li~~l~~~~~~~~i~vH~HND~GlAvANslaAv~AGA~~Vd~Tin  232 (526)
T TIGR00977       153 PEYALATLATAQQAGADWLVLCDTNGGTLPHEISEITTKVKRSLKQPQLGIHAHNDSGTAVANSLLAVEAGATMVQGTIN  232 (526)
T ss_pred             HHHHHHHHHHHHhCCCCeEEEecCCCCcCHHHHHHHHHHHHHhCCCCEEEEEECCCCChHHHHHHHHHHhCCCEEEEecc
Confidence            99999999999999999999999999999999999999999999876799999999999999999999999999999999


Q ss_pred             cCCCCCCCCCCCCCccHHHHHHHHHh-CCCC--CccChHHHHHHHHHHHHHhCCCCCCCcccccccccccccCCC
Q 015894          327 GLGGCPYAKGASGNVATEDVVYMLNG-LGVR--TNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANASKL  398 (398)
Q Consensus       327 GlGecp~a~graGNa~lE~vv~~L~~-~Gi~--t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~f~~~~s~~  398 (398)
                      ||||      |+||++||+++..|.. +|++  +++|+++|.++++++++++|+++|+|+|+||+++|+ |+|||
T Consensus       233 GiGE------RaGNa~Le~v~~~L~~~~g~~~~t~idl~~L~~~s~~v~~~~~~~v~~~~pivG~~aF~-h~sGi  300 (526)
T TIGR00977       233 GYGE------RCGNANLCSLIPNLQLKLGYDVIPPENLKKLTSTARLVAEIVNLPPDDNMPYVGRSAFA-HKGGV  300 (526)
T ss_pred             cccC------ccCCCcHHHHHHHHHhhcCCCCCCccCHHHHHHHHHHHHHHhCCCCCCCCCccCcceee-eeccc
Confidence            9999      9999999999999974 7877  799999999999999999999999999999999999 99997

This model represents uncharacterized proteins related to 2-isopropylmalate synthases and homocitrate synthases but phylogenetically distint. Each species represented in the seed alignment also has a member of a known family of 2-isopropylmalate synthases.

>TIGR00970 leuA_yeast 2-isopropylmalate synthase, yeast type

Probab=100.00  E-value=9.7e-61  Score=504.29  Aligned_cols=293  Identities=18%  Similarity=0.146  Sum_probs=267.5

Q ss_pred             CCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh--c-cCCcEEE
Q 015894           94 VPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN--V-EGARFPV  170 (398)
Q Consensus        94 ~p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~--~-~~~~l~~  170 (398)
                      +.+.+.|+|||||||+|.++..|++++|++|++.|+++||+.||+|||.+.    + .|.+++.+.++.  . +++++++
T Consensus        23 ~~~~~~~~DtTLRDG~Q~~g~~~s~e~Ki~ia~~L~~~Gvd~IE~Gfp~~s----~-~D~e~v~~i~~~~l~~~~~~i~a   97 (564)
T TIGR00970        23 ITRAPRWLSTDLRDGNQALPDPMSPARKRRYFDLLVRIGFKEIEVGFPSAS----Q-TDFDFVREIIEQGAIPDDVTIQV   97 (564)
T ss_pred             cCcCCeEecCCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC----H-HHHHHHHHHHHhcCCCCCcEEEE
Confidence            455799999999999999999999999999999999999999999976543    2 678878777765  2 3689999


Q ss_pred             EeCCHh-hHHHHHHc--CCC--EEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEE----EeeeecCCC
Q 015894          171 LTPNLK-GFEAAVAA--GAK--EVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGY----LSCVVGCPV  241 (398)
Q Consensus       171 l~~n~~-~ie~a~~~--Gv~--~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~----l~~~fg~~~  241 (398)
                      |+++.+ ++++++++  |++  .|++|.++||.|++.++|+|++++++.+.+++++||++|..+..+    +.+.|+.+|
T Consensus        98 l~~~~~~did~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~s~ee~l~~~~~~v~~ak~~~~~~~~~~~~~~~v~f~~Ed  177 (564)
T TIGR00970        98 LTQSREELIERTFEALSGAKRATVHFYNATSILFREVVFRASRAEVQAIATDGTKLVRKCTKQAAKYPGTQWRFEYSPES  177 (564)
T ss_pred             EcCCchhhHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccccccceEEEEEeccc
Confidence            999876 49999887  554  899999999999999999999999999999999999998754433    234477788


Q ss_pred             CCCCCHHHHHHHHHHHHhCCC------CEEEEccCcCcCCHHHHHHHHHHHHhhCCC---CeEEEEeCCccchHHHHHHH
Q 015894          242 EGMVPPSKVAYVSKQLYDMGC------SEISLGDTIGVGTPGTVIPMLEAVLDAVPV---DKLAVHFHDTYGQALSNILA  312 (398)
Q Consensus       242 ~~r~~~~~l~~~a~~l~~~Ga------d~I~L~DT~G~~~P~~v~~lv~~l~~~~p~---~~l~~H~Hnd~GlA~ANala  312 (398)
                      .+|++++++.++++.+.++|+      ++|+|+||+|.++|.+++++++.+++++|.   ++|++|+|||+|||+||+++
T Consensus       178 ~~r~d~~~l~~~~~~a~~ag~~~~~~~~~i~l~DTvG~a~P~~~~~~i~~l~~~~~~~~~~~l~vH~HND~GlAvANsla  257 (564)
T TIGR00970       178 FSDTELEFAKEVCEAVKEVWAPTPERPIIFNLPATVEMTTPNVYADSIEYFSTNIAEREKVCLSLHPHNDRGTAVAAAEL  257 (564)
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCccCCeeEEEeccccCccCHHHHHHHHHHHHHhcCcccCceEEEEECCCCChHHHHHHH
Confidence            899999999999999999987      499999999999999999999999998863   56999999999999999999


Q ss_pred             HHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCCCCCCCcccccccccc
Q 015894          313 SLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTST  392 (398)
Q Consensus       313 Al~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~f~  392 (398)
                      |+++||++||+|++|+||      |+||++||+|+++|+.+|+++++|++.|.++++++++++|+++|+|+|+||+++|+
T Consensus       258 Av~aGa~~v~gt~~G~GE------RaGNa~le~lv~~L~~~g~~t~idl~~L~~~s~~v~~~~~~~i~~~~PivG~~aF~  331 (564)
T TIGR00970       258 GFLAGADRIEGCLFGNGE------RTGNVDLVTLALNLYTQGVSPNLDFSNLDEIRRTVEYCNKIPVHERHPYGGDLVYT  331 (564)
T ss_pred             HHHhCCCEEEeecCcCCc------cccCccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCchhhhHhh
Confidence            999999999999999999      99999999999999999999999999999999999999999999999999999999


Q ss_pred             cccCCC
Q 015894          393 ANASKL  398 (398)
Q Consensus       393 ~~~s~~  398 (398)
                       |+|||
T Consensus       332 -h~SGi  336 (564)
T TIGR00970       332 -AFSGS  336 (564)
T ss_pred             -hccch
Confidence             99996

A larger family of homologous proteins includes homocitrate synthase, distinct lineages of 2-isopropylmalate synthase, several distinct, uncharacterized, orthologous sets in the Archaea, and other related enzymes. This model describes a family of 2-isopropylmalate synthases as found in yeasts and in a minority of studied bacteria.

>PRK03739 2-isopropylmalate synthase; Validated

Probab=100.00  E-value=1.8e-60  Score=501.22  Aligned_cols=291  Identities=18%  Similarity=0.129  Sum_probs=261.1

Q ss_pred             CCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHH-HHHHHH-Hh-c--cCCcE
Q 015894           94 VPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAK-DVMAAI-QN-V--EGARF  168 (398)
Q Consensus        94 ~p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~-~v~~~i-~~-~--~~~~l  168 (398)
                      +.+++.|.|+|||||+|+++..|++++|++|++.|+++||+.||+|||..       .+.+ +.++.+ +. +  ++..+
T Consensus        27 ~~~~~~i~dttLRDGeQ~~gv~~s~~~Ki~ia~~L~~~GV~~IE~GfP~~-------s~~e~e~v~~i~~~~~~~~~~~i   99 (552)
T PRK03739         27 ITKAPIWCSVDLRDGNQALIEPMSPERKLRMFDLLVKIGFKEIEVGFPSA-------SQTDFDFVRELIEEGLIPDDVTI   99 (552)
T ss_pred             cCCCCeEeeCCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEECCCc-------ChHHHHHHHHHHHhcCCCCCCEE
Confidence            44579999999999999999999999999999999999999999998543       3333 455555 43 2  47899


Q ss_pred             EEEeCCHh-hHHHHHHc--CCC--EEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEE-EEEeeeecCCCC
Q 015894          169 PVLTPNLK-GFEAAVAA--GAK--EVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVR-GYLSCVVGCPVE  242 (398)
Q Consensus       169 ~~l~~n~~-~ie~a~~~--Gv~--~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~-~~l~~~fg~~~~  242 (398)
                      .+|+|+.+ |+++++++  |++  .|++|+++||.|++.++++|++++++.+.+++++||++|.... ..+.+.|+.+|.
T Consensus       100 ~~l~r~~~~di~~a~~a~~~~~~~~v~i~~~~Sd~h~~~~l~~t~ee~l~~~~~~v~~a~~~~~~~~~~~~~v~f~~EDa  179 (552)
T PRK03739        100 QVLTQAREHLIERTFEALEGAKRAIVHLYNSTSPLQRRVVFGKDRDGIKAIAVDGARLVKELAAKYPETEWRFEYSPESF  179 (552)
T ss_pred             EEEeccchhHHHHHHHHhcCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceeEEEEecccC
Confidence            99999875 59999886  443  7999999999999999999999999999999999999985321 113345788999


Q ss_pred             CCCCHHHHHHHHHHHHh---CCCC---EEEEccCcCcCCHHHHHHHHHHHHhhCC---CCeEEEEeCCccchHHHHHHHH
Q 015894          243 GMVPPSKVAYVSKQLYD---MGCS---EISLGDTIGVGTPGTVIPMLEAVLDAVP---VDKLAVHFHDTYGQALSNILAS  313 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~---~Gad---~I~L~DT~G~~~P~~v~~lv~~l~~~~p---~~~l~~H~Hnd~GlA~ANalaA  313 (398)
                      +|++++|+.++++.+.+   +|++   +|+|+||+|+++|.+++++++.+++.+|   +++|++|+|||+|||+||+++|
T Consensus       180 sR~d~~~l~~~~~~a~~~~~ag~~~~~~i~l~DTvG~~~P~~~~~~v~~l~~~~~~~~~~~i~vH~HND~GlAvANslaA  259 (552)
T PRK03739        180 TGTELDFALEVCDAVIDVWQPTPERKVILNLPATVEMSTPNVYADQIEWMCRNLARRDSVILSLHPHNDRGTGVAAAELA  259 (552)
T ss_pred             CCCCHHHHHHHHHHHHHhhcCCCCceeEEEeccCCcCcCHHHHHHHHHHHHHhCCcccCceEEEEeCCCCChHHHHHHHH
Confidence            99999999999999876   4655   5999999999999999999999999987   6789999999999999999999


Q ss_pred             HHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCCCCCCCccccccccccc
Q 015894          314 LQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTA  393 (398)
Q Consensus       314 l~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~f~~  393 (398)
                      +++||++||+|++|+||      |+||++||+|+++|+.+|+++++|+++|.++++++++++|+++|+|+||||+++|+ 
T Consensus       260 v~aGa~~v~gtvnG~GE------RaGNa~le~vv~~L~~~g~~t~idl~~L~~~s~~v~~~~~~~i~~~~PivG~~aF~-  332 (552)
T PRK03739        260 LMAGADRVEGCLFGNGE------RTGNVDLVTLALNLYTQGVDPGLDFSDIDEIRRTVEYCNQLPVHPRHPYAGDLVFT-  332 (552)
T ss_pred             HHhCCCEEEeeCCcCcc------cccChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCccchhhhh-
Confidence            99999999999999999      99999999999999889999999999999999999999999999999999999999 


Q ss_pred             ccCCC
Q 015894          394 NASKL  398 (398)
Q Consensus       394 ~~s~~  398 (398)
                      |+|||
T Consensus       333 hesGi  337 (552)
T PRK03739        333 AFSGS  337 (552)
T ss_pred             hccch
Confidence            99996

>PRK14847 hypothetical protein; Provisional

Probab=100.00  E-value=1.8e-59  Score=463.10  Aligned_cols=292  Identities=16%  Similarity=0.126  Sum_probs=253.4

Q ss_pred             hhhhhhhccCCCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc
Q 015894           84 KDLTSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV  163 (398)
Q Consensus        84 ~~~~~~~~~~~p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~  163 (398)
                      |.-..|.....   ..|+|+|||||+|++|..|+.++|++|++.|+++||+.||+|+|....     .|.+.+.+.++..
T Consensus        22 ~~w~~~~~~~~---p~~~DTTLRDGeQ~pGv~fs~eeKl~IA~~L~~lGVd~IEvG~Pa~s~-----~e~e~ir~I~~~~   93 (333)
T PRK14847         22 RAWPARRPAAA---PIWMSTDLRDGNQALIEPMDGARKLRLFEQLVAVGLKEIEVAFPSASQ-----TDFDFVRKLIDER   93 (333)
T ss_pred             CCCcccccCCC---CceecCCCCccCCCCCCCCCHHHHHHHHHHHHHcCCCEEEeeCCCCCH-----HHHHHHHHHHHhC
Confidence            33344444443   459999999999999999999999999999999999999999997642     2444444444432


Q ss_pred             ---cCCcEEEEeCC-HhhHHHHHHcCC----CEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEE-Ee
Q 015894          164 ---EGARFPVLTPN-LKGFEAAVAAGA----KEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGY-LS  234 (398)
Q Consensus       164 ---~~~~l~~l~~n-~~~ie~a~~~Gv----~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~-l~  234 (398)
                         .++++++|+|. ..||+++++++.    +.|++|+++||.|++.++++++++.++.+.+.|++||++|....+. +.
T Consensus        94 ~~~~~~~i~~~~r~~~~dId~a~e~~~~~~~~~Vhi~~p~Sd~h~~~kl~~s~~~vl~~~~~~v~~Ak~~~~~~~g~~~~  173 (333)
T PRK14847         94 RIPDDVTIEALTQSRPDLIARTFEALAGSPRAIVHLYNPIAPQWRRIVFGMSRAEIKEIALAGTRQIRALADANPGTQWI  173 (333)
T ss_pred             CCCCCcEEEEEecCcHHHHHHHHHHhCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhccccCCCceE
Confidence               26889999996 578999988765    5699999999999999999999999999999999999996521100 01


Q ss_pred             eeecCCCCCCCCHHHHHHHHHHHHhC-C-----CCEEEEccCcCcCCHHHHHHHHHHHHhhCC---CCeEEEEeCCccch
Q 015894          235 CVVGCPVEGMVPPSKVAYVSKQLYDM-G-----CSEISLGDTIGVGTPGTVIPMLEAVLDAVP---VDKLAVHFHDTYGQ  305 (398)
Q Consensus       235 ~~fg~~~~~r~~~~~l~~~a~~l~~~-G-----ad~I~L~DT~G~~~P~~v~~lv~~l~~~~p---~~~l~~H~Hnd~Gl  305 (398)
                      ..|+.+|++|++++|+.++++.+.+. |     +++|+|+||+|.++|.+++++|+.++++++   .++|++|+|||+||
T Consensus       174 V~~~~EDasRad~dfL~~~~~~a~~~~ga~r~~a~~i~l~DTVG~~~P~~~~~~i~~l~~~~~~~~~v~i~~H~HnD~Gl  253 (333)
T PRK14847        174 YEYSPETFSLAELDFAREVCDAVSAIWGPTPQRKMIINLPATVESSTANVYADQIEWMHRSLARRDCIVLSVHPHNDRGT  253 (333)
T ss_pred             EEEeeecCCCCCHHHHHHHHHHHHHHhCCCccCCcEEEeCCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEEeCCCCch
Confidence            12667899999999999999987555 5     777999999999999999999999998875   68999999999999


Q ss_pred             HHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCCCCCCCccc
Q 015894          306 ALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAI  385 (398)
Q Consensus       306 A~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pi  385 (398)
                      |+||+++|+++||++||+|++|+||      |+||++||+++++|+.+|+++++|+..|.++++++++++|+++|+|+||
T Consensus       254 A~ANslaA~~aGa~~i~~tv~G~GE------RaGNa~lE~v~~~L~~~g~~~~id~~~l~~~~~~v~~~sg~~v~~~kPi  327 (333)
T PRK14847        254 AVAAAELAVLAGAERIEGCLFGNGE------RTGNVDLVALALNLERQGIASGLDFRDMAALRACVSECNQLPIDVFHPY  327 (333)
T ss_pred             HHHHHHHHHHhCCCEEEeeCCcCCc------cccchhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCe
Confidence            9999999999999999999999999      9999999999999999999999999999999999999999999999999


Q ss_pred             cccc
Q 015894          386 ALSK  389 (398)
Q Consensus       386 vG~~  389 (398)
                      +|-+
T Consensus       328 vg~~  331 (333)
T PRK14847        328 AWLD  331 (333)
T ss_pred             ecCC
Confidence            9975

>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain

Probab=100.00  E-value=1.9e-57  Score=438.33  Aligned_cols=254  Identities=24%  Similarity=0.302  Sum_probs=237.5

Q ss_pred             EEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCH-HHHHHHHHh-ccCCcEEEEeC-CHh
Q 015894          100 IVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADA-KDVMAAIQN-VEGARFPVLTP-NLK  176 (398)
Q Consensus       100 i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~-~~v~~~i~~-~~~~~l~~l~~-n~~  176 (398)
                      |+|||||||+|++++.|++++|++|++.|+++||+.||+|+|..       .+. +++++.+.+ .+++++.+++| +.+
T Consensus         1 i~D~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iE~g~p~~-------~~~~~e~~~~l~~~~~~~~~~~~~r~~~~   73 (259)
T cd07939           1 INDTTLRDGEQAPGVAFSREEKLAIARALDEAGVDEIEVGIPAM-------GEEEREAIRAIVALGLPARLIVWCRAVKE   73 (259)
T ss_pred             CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCC-------CHHHHHHHHHHHhcCCCCEEEEeccCCHH
Confidence            57999999999999999999999999999999999999997643       322 356666654 56899999996 789


Q ss_pred             hHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHH
Q 015894          177 GFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQ  256 (398)
Q Consensus       177 ~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~  256 (398)
                      +++++.++|++.|++++++||.|.+.++|+|++++++.+.+++++||++|+.|+      |++++.++++++++.+++++
T Consensus        74 ~v~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~------~~~~~~~~~~~~~~~~~~~~  147 (259)
T cd07939          74 DIEAALRCGVTAVHISIPVSDIHLAHKLGKDRAWVLDQLRRLVGRAKDRGLFVS------VGAEDASRADPDFLIEFAEV  147 (259)
T ss_pred             HHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEE------EeeccCCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999876      55678899999999999999


Q ss_pred             HHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCC
Q 015894          257 LYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKG  336 (398)
Q Consensus       257 l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~g  336 (398)
                      +.++|+++|+|+||+|.++|.+++++++.+++++| ++|++|+|||+|||+||+++|+++||++||+|++|||+      
T Consensus       148 ~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hn~~Gla~An~laAi~aG~~~vd~s~~G~G~------  220 (259)
T cd07939         148 AQEAGADRLRFADTVGILDPFTTYELIRRLRAATD-LPLEFHAHNDLGLATANTLAAVRAGATHVSVTVNGLGE------  220 (259)
T ss_pred             HHHCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCChHHHHHHHHHHhCCCEEEEecccccc------
Confidence            99999999999999999999999999999999999 78999999999999999999999999999999999999      


Q ss_pred             CCCCccHHHHHHHHHhC-CCCCccChHHHHHHHHHHHH
Q 015894          337 ASGNVATEDVVYMLNGL-GVRTNVDIRKLMIAGDFICK  373 (398)
Q Consensus       337 raGNa~lE~vv~~L~~~-Gi~t~iDl~~L~~~~~~v~~  373 (398)
                      |+||++||+++.+|+.. |+++++|+++|.++++++++
T Consensus       221 ~aGN~~tE~lv~~l~~~~g~~~~idl~~l~~~~~~~~~  258 (259)
T cd07939         221 RAGNAALEEVVMALKHLYGRDTGIDTTRLPELSQLVAR  258 (259)
T ss_pred             cccCcCHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHh
Confidence            99999999999999996 99999999999999999876

FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox

>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain

Probab=100.00  E-value=7.6e-57  Score=436.07  Aligned_cols=254  Identities=26%  Similarity=0.325  Sum_probs=238.0

Q ss_pred             EEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCC-CCCcccCCCCHHHHHHHHH-hccCCcEEEEeC-CHh
Q 015894          100 IVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFV-SPKWVPQLADAKDVMAAIQ-NVEGARFPVLTP-NLK  176 (398)
Q Consensus       100 i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~-~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~-n~~  176 (398)
                      |+|||||||+|++++.|++++|++|++.|+++||+.||+|+|+ +|+      | ++.++.++ ..+++++.+|+| +.+
T Consensus         1 i~D~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~------~-~~~~~~l~~~~~~~~~~~l~r~~~~   73 (268)
T cd07940           1 IFDTTLRDGEQTPGVSLTPEEKLEIARQLDELGVDVIEAGFPAASPG------D-FEAVKRIAREVLNAEICGLARAVKK   73 (268)
T ss_pred             CCCCCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCHH------H-HHHHHHHHHhCCCCEEEEEccCCHh
Confidence            5799999999999999999999999999999999999999987 432      3 35555555 468899999996 789


Q ss_pred             hHHHHHHcC----CCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH
Q 015894          177 GFEAAVAAG----AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAY  252 (398)
Q Consensus       177 ~ie~a~~~G----v~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~  252 (398)
                      +++.+.++|    ++.|++++++||.|.+.|+|++++++++.+.+++++||++|+.|.      |++|+.++++++++.+
T Consensus        74 ~v~~a~~~~~~~~~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~------~~~~~~~~~~~~~~~~  147 (268)
T cd07940          74 DIDAAAEALKPAKVDRIHTFIATSDIHLKYKLKKTREEVLERAVEAVEYAKSHGLDVE------FSAEDATRTDLDFLIE  147 (268)
T ss_pred             hHHHHHHhCCCCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCeEE------EeeecCCCCCHHHHHH
Confidence            999999999    999999999999999999999999999999999999999999876      5678889999999999


Q ss_pred             HHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCC--CeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCC
Q 015894          253 VSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPV--DKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGG  330 (398)
Q Consensus       253 ~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~--~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGe  330 (398)
                      +++++.++|+++|+|+||+|.++|.+++++++.+++++|+  ++|++|+|||+|||+||+++|+++||++||+|++|||+
T Consensus       148 ~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~i~l~~H~Hn~~GlA~An~laAi~aG~~~iD~s~~GlG~  227 (268)
T cd07940         148 VVEAAIEAGATTINIPDTVGYLTPEEFGELIKKLKENVPNIKVPISVHCHNDLGLAVANSLAAVEAGARQVECTINGIGE  227 (268)
T ss_pred             HHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHhCCCCceeEEEEecCCcchHHHHHHHHHHhCCCEEEEEeecccc
Confidence            9999999999999999999999999999999999999986  89999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCccHHHHHHHHHhCC----CCCccChHHHHHHHHHHH
Q 015894          331 CPYAKGASGNVATEDVVYMLNGLG----VRTNVDIRKLMIAGDFIC  372 (398)
Q Consensus       331 cp~a~graGNa~lE~vv~~L~~~G----i~t~iDl~~L~~~~~~v~  372 (398)
                            |+||++||+++.+|+..|    +++++|+++|.+++++++
T Consensus       228 ------~aGN~~tE~lv~~L~~~~~~~~~~t~idl~~l~~~~~~~~  267 (268)
T cd07940         228 ------RAGNAALEEVVMALKTRYDYYGVETGIDTEELYETSRLVS  267 (268)
T ss_pred             ------ccccccHHHHHHHHHhcccccCCCCCcCHHHHHHHHHHHh
Confidence                  999999999999999876    999999999999999976

2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h

>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain

Probab=100.00  E-value=9.3e-56  Score=427.37  Aligned_cols=258  Identities=20%  Similarity=0.247  Sum_probs=232.6

Q ss_pred             cEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC-CHh
Q 015894           98 VKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP-NLK  176 (398)
Q Consensus        98 I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~-n~~  176 (398)
                      .+|+|||||||+|.+++.|++++|++|++.|+++||+.||+|+|   +..|++.+..+++..+  ....++.++.+ +.+
T Consensus         1 ~~I~D~TLRDG~Q~~~~~~s~~~k~~i~~~L~~~Gv~~IEvG~P---~~~~~~~~~~~~l~~~--~~~~~v~~~~r~~~~   75 (262)
T cd07948           1 FKIIDSTLREGEQFANAFFDTEDKIEIAKALDAFGVDYIELTSP---AASPQSRADCEAIAKL--GLKAKILTHIRCHMD   75 (262)
T ss_pred             CEEEECCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEECC---CCCHHHHHHHHHHHhC--CCCCcEEEEecCCHH
Confidence            36999999999999999999999999999999999999999984   4456654443333222  22356666654 789


Q ss_pred             hHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHH
Q 015894          177 GFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQ  256 (398)
Q Consensus       177 ~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~  256 (398)
                      |+++|.++|++.|++++++||.|.+.|++++++++++.+.+++++||++|+.|+++++.+|      +++++++.+++++
T Consensus        76 di~~a~~~g~~~i~i~~~~S~~~~~~~~~~~~~e~~~~~~~~i~~a~~~G~~v~~~~eda~------r~~~~~l~~~~~~  149 (262)
T cd07948          76 DARIAVETGVDGVDLVFGTSPFLREASHGKSITEIIESAVEVIEFVKSKGIEVRFSSEDSF------RSDLVDLLRVYRA  149 (262)
T ss_pred             HHHHHHHcCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeeC------CCCHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999998887655      5668999999999


Q ss_pred             HHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCC
Q 015894          257 LYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKG  336 (398)
Q Consensus       257 l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~g  336 (398)
                      +.++|+++|+|+||+|.++|.+++++++.+++.+| ++|++|+|||+|||+||+++|+++||++||+|++|||+      
T Consensus       150 ~~~~g~~~i~l~Dt~G~~~P~~v~~~~~~~~~~~~-~~i~~H~Hn~~Gla~an~~~a~~aG~~~vd~s~~GlGe------  222 (262)
T cd07948         150 VDKLGVNRVGIADTVGIATPRQVYELVRTLRGVVS-CDIEFHGHNDTGCAIANAYAALEAGATHIDTTVLGIGE------  222 (262)
T ss_pred             HHHcCCCEEEECCcCCCCCHHHHHHHHHHHHHhcC-CeEEEEECCCCChHHHHHHHHHHhCCCEEEEecccccc------
Confidence            99999999999999999999999999999999988 79999999999999999999999999999999999999      


Q ss_pred             CCCCccHHHHHHHHHhC---CCCCccChHHHHHHHHHHHH
Q 015894          337 ASGNVATEDVVYMLNGL---GVRTNVDIRKLMIAGDFICK  373 (398)
Q Consensus       337 raGNa~lE~vv~~L~~~---Gi~t~iDl~~L~~~~~~v~~  373 (398)
                      |+||++||+++.+|+..   |+++++|+++|.++++++++
T Consensus       223 raGn~~~e~~~~~l~~~~~~~~~~~~~l~~l~~~~~~v~~  262 (262)
T cd07948         223 RNGITPLGGLIARMYTADPEYVVSKYKLELLPELERLVAD  262 (262)
T ss_pred             ccCCccHHHHHHHHHhccccCCCCCcCHHHHHHHHHHHhC
Confidence            99999999999999753   67789999999999999863

Homocitrate synthase (HCS) catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate, the first step in the lysine biosynthesis pathway. This family includes the Yarrowia lipolytica LYS1 protein as well as the Saccharomyces cerevisiae LYS20 and LYS21 proteins. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. Th

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily

Probab=100.00  E-value=9.5e-55  Score=417.16  Aligned_cols=262  Identities=40%  Similarity=0.579  Sum_probs=249.6

Q ss_pred             EeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh-ccCCcEEEEeCC-HhhH
Q 015894          101 VEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN-VEGARFPVLTPN-LKGF  178 (398)
Q Consensus       101 ~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~~n-~~~i  178 (398)
                      +|||||||+|++++.|++++|+++++.|+++||+.||+|++..++++|++.|.+++++.+++ .+++++.+|+++ .+++
T Consensus         1 ~D~tlRDG~q~~~~~~s~e~~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i   80 (265)
T cd03174           1 TDTTLRDGLQSEGATFSTEDKLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGI   80 (265)
T ss_pred             CCCCCCCcccCCCCCCCHHHHHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhH
Confidence            59999999999999999999999999999999999999999988888999999988888875 458999999998 8899


Q ss_pred             HHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHH
Q 015894          179 EAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLY  258 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~  258 (398)
                      +++.++|++.|+++++.||.|.+.|+++++++.++.+.+.++++|+.|+++.++++.+++|    .++++++.++++.+.
T Consensus        81 ~~a~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~i~~a~~~G~~v~~~~~~~~~~----~~~~~~l~~~~~~~~  156 (265)
T cd03174          81 ERALEAGVDEVRIFDSASETHSRKNLNKSREEDLENAEEAIEAAKEAGLEVEGSLEDAFGC----KTDPEYVLEVAKALE  156 (265)
T ss_pred             HHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEeecCC----CCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999888876543    378999999999999


Q ss_pred             hCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCC
Q 015894          259 DMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGAS  338 (398)
Q Consensus       259 ~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~gra  338 (398)
                      ++|+++|+|+||+|.++|.++.++++.+++.+|+++|++|+|||+|||+||+++|+++||++||+|++|||+      |+
T Consensus       157 ~~g~~~i~l~Dt~G~~~P~~v~~li~~l~~~~~~~~~~~H~Hn~~gla~an~laA~~aG~~~id~s~~G~G~------~~  230 (265)
T cd03174         157 EAGADEISLKDTVGLATPEEVAELVKALREALPDVPLGLHTHNTLGLAVANSLAALEAGADRVDGSVNGLGE------RA  230 (265)
T ss_pred             HcCCCEEEechhcCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCCChHHHHHHHHHHcCCCEEEeccccccc------cc
Confidence            999999999999999999999999999999999889999999999999999999999999999999999999      99


Q ss_pred             CCccHHHHHHHHHhCCCCCccChHHHHHHHHHHH
Q 015894          339 GNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFIC  372 (398)
Q Consensus       339 GNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~  372 (398)
                      ||++||+++.+|+..|+++++|++.|.+++++++
T Consensus       231 Gn~~~e~~~~~l~~~~~~~~~~~~~l~~~~~~~~  264 (265)
T cd03174         231 GNAATEDLVAALEGLGIDTGIDLEKLLEISRYVE  264 (265)
T ss_pred             cCccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHh
Confidence            9999999999999999999999999999999876

The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".

>cd07942 DRE_TIM_LeuA Mycobacterium tuberculosis LeuA3 and related proteins, N-terminal catalytic TIM barrel domain

Probab=100.00  E-value=4.2e-55  Score=426.64  Aligned_cols=262  Identities=20%  Similarity=0.207  Sum_probs=233.8

Q ss_pred             EEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHH-HHHHHH-Hh---ccCCcEEEEeC
Q 015894           99 KIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAK-DVMAAI-QN---VEGARFPVLTP  173 (398)
Q Consensus        99 ~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~-~v~~~i-~~---~~~~~l~~l~~  173 (398)
                      ..+|+|||||+|+++..|++++|++|++.|+++||+.||+||       |++.|.+ ++++.+ +.   .+++++.+|+|
T Consensus         3 ~~~d~tlRDG~Q~~g~~~s~~~Ki~ia~~L~~~Gv~~IE~gf-------P~~~~~e~e~~~~i~~~~~~~~~~~~~al~r   75 (284)
T cd07942           3 IWCSVDLRDGNQALAEPMSVEQKLRFFKLLVKIGFKEIEVGF-------PSASQTDFDFVRELIEEDLIPDDVTIQVLTQ   75 (284)
T ss_pred             cccCCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeC-------CCCCHHHHHHHHHHHHccCCCCCCEEEEEcC
Confidence            467899999999999999999999999999999999999996       4556665 666666 43   14789999999


Q ss_pred             CHhh-HHHHHHc--CCC--EEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcE-EEEEeeeecCCCCCCCCH
Q 015894          174 NLKG-FEAAVAA--GAK--EVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPV-RGYLSCVVGCPVEGMVPP  247 (398)
Q Consensus       174 n~~~-ie~a~~~--Gv~--~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v-~~~l~~~fg~~~~~r~~~  247 (398)
                      |.++ +++++++  |++  .|++++++||.|+++|+|+|++++++.+.+++++||++|++. ...+-+.|+.+|++|+++
T Consensus        76 ~~~~die~a~~~~~~~~~~~v~i~~~~Sd~h~~~~~~~s~~e~~~~~~~~v~~a~~~g~~~~~~~~~~~~~~EDasr~~~  155 (284)
T cd07942          76 AREDLIERTFEALRGAKKAIVHLYNATSPLQRRVVFGKSKEEIIEIAVDGAKLVKELAAKYPETDWRFEYSPESFSDTEL  155 (284)
T ss_pred             CChhhHHHHHHHhCCCCCCEEEEEEcCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcccccCceEEEEECCccCCCCCH
Confidence            9765 9999998  675  799999999999999999999999999999999999999751 112333466788889999


Q ss_pred             HHHHHHHHHHHhC---CCC---EEEEccCcCcCCHHHHHHHHHHHHhhCC---CCeEEEEeCCccchHHHHHHHHHHhCC
Q 015894          248 SKVAYVSKQLYDM---GCS---EISLGDTIGVGTPGTVIPMLEAVLDAVP---VDKLAVHFHDTYGQALSNILASLQMGI  318 (398)
Q Consensus       248 ~~l~~~a~~l~~~---Gad---~I~L~DT~G~~~P~~v~~lv~~l~~~~p---~~~l~~H~Hnd~GlA~ANalaAl~aGa  318 (398)
                      +++.++++.+.++   |++   +|+|+||+|.++|.+++++++.+++.+|   .++|++|+|||+|||+||+++|+++||
T Consensus       156 ~~l~~~~~~~~~~~~~g~~~~~~i~laDTvG~a~P~~v~~~~~~l~~~~~~~~~~~~~~H~Hnd~G~a~AN~laA~~aG~  235 (284)
T cd07942         156 DFALEVCEAVIDVWQPTPENKIILNLPATVEVATPNVYADQIEWFCRNLSRRESVIISLHPHNDRGTGVAAAELALLAGA  235 (284)
T ss_pred             HHHHHHHHHHHHhhcCCCCcceEEEccccccccCHHHHHHHHHHHHHhcCCCCCceEEEEecCCCchHHHHHHHHHHhCC
Confidence            9999999999887   544   9999999999999999999999999886   456999999999999999999999999


Q ss_pred             CEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHH
Q 015894          319 STVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICK  373 (398)
Q Consensus       319 ~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~  373 (398)
                      ++||+|++|+|+      |+||++||+++.+|+.+|+++++|+.+|.++++++++
T Consensus       236 ~~id~~~~g~Ge------RaGN~~~E~lv~~l~~~g~~t~id~~~l~~~s~~v~~  284 (284)
T cd07942         236 DRVEGTLFGNGE------RTGNVDLVTLALNLYSQGVDPGLDFSDIDEIIRVVEE  284 (284)
T ss_pred             CEEEeeCccCCc------cccchhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHhC
Confidence            999999999999      9999999999999999999999999999999999763

Alpha-isopropylmalate synthase (LeuA), a key enzyme in leucine biosynthesis, catalyzes the first committed step in the pathway, converting acetyl-CoA and alpha-ketoisovalerate to alpha-isopropyl malate and CoA. Although the reaction catalyzed by LeuA is similar to that of the Arabidopsis thaliana IPMS1 protein, the two fall into phylogenetically distinct families within the same superfamily. LeuA has and N-terminal TIM barrel catalytic domain, a helical linker domain, and a C-terminal regulatory domain. LeuA forms a homodimer in which the linker domain of one monomer sits over the catalytic domain of the other, inserting residues into the active site that may be important for catalysis. Homologs of LeuA are found in bacteria as well as fungi. This family includes alpha-isopropylmalate synthases I (LEU4) and II (LEU9) from Saccharomyces cerevisiae. This family belong

>KOG2367 consensus Alpha-isopropylmalate synthase/homocitrate synthase [Amino acid transport and metabolism]

Probab=100.00  E-value=3e-54  Score=431.19  Aligned_cols=287  Identities=19%  Similarity=0.256  Sum_probs=267.2

Q ss_pred             CCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhcc-CCcEEEEe
Q 015894           94 VPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVE-GARFPVLT  172 (398)
Q Consensus        94 ~p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~-~~~l~~l~  172 (398)
                      .|+.+++.|+|||||+|++|..|++++|++|++.|+..||++||+|||+++.     .|+++....++..+ +..+++++
T Consensus        54 ~~n~vr~~dttLRdGeQs~ga~~~~~qK~eiar~L~~~gvd~IEv~fP~aSe-----~~~~~~~~i~k~~g~~~~I~~l~  128 (560)
T KOG2367|consen   54 DVNYVRVLDTTLRDGEQSPGAFLTTEQKLEIARQLAKLGVDIIEVGFPVASE-----QDFEDCKTIAKTLGYVPVICTLI  128 (560)
T ss_pred             CcCcceeecccccccccCCCCcCCcHHHHHHHHHHHhcCcCEEEecCcccCc-----chHHHHHHHHHhCCCCceEEEee
Confidence            4678999999999999999999999999999999999999999999998753     46777766666555 46888999


Q ss_pred             CC-HhhHHHHHHcCCC----EEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEeeeecCCCCCCCC
Q 015894          173 PN-LKGFEAAVAAGAK----EVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSI-PVRGYLSCVVGCPVEGMVP  246 (398)
Q Consensus       173 ~n-~~~ie~a~~~Gv~----~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~-~v~~~l~~~fg~~~~~r~~  246 (398)
                      |+ ..+++++.|++.+    +|++|.++||+|++.++++|++++++.+.++++.+|.+|. .++      |++++.+|++
T Consensus       129 rc~~~di~~tvEAl~~aKr~~Vh~~~aTSd~~rey~~~kskeevi~~Ave~ikfvkslg~~~ie------FSpEd~~rse  202 (560)
T KOG2367|consen  129 RCHMDDIERTVEALKYAKRPRVHVFIATSDIHREYKLKKSKEEVIESAVEVIKFVKSLGKWDIE------FSPEDFGRSE  202 (560)
T ss_pred             ccchHHHHHHHHHhhccCcceEEEEecccHHHHHHHhcccHHHHHHHHHHHHHHHHhcccceEE------ECccccccCc
Confidence            96 5789999998664    5999999999999999999999999999999999999994 455      8899999999


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCC---CeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          247 PSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPV---DKLAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       247 ~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~---~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      ++|+++++++...+|+.++.|+||+|+.+|.+++++|+.++.+.|+   +.|+.|||||+|+|+||+..++.|||++||+
T Consensus       203 ~~fl~eI~~aV~Kag~~tvnipdTVgia~P~~y~dLI~y~~tn~~~~e~v~Is~HcHND~G~a~Ant~~g~~AGA~~VE~  282 (560)
T KOG2367|consen  203 LEFLLEILGAVIKAGVTTVNIPDTVGIATPNEYGDLIEYLKTNTPGREKVCISTHCHNDLGCATANTELGLLAGARQVEV  282 (560)
T ss_pred             HHHHHHHHHHHHHhCCccccCcceecccChHHHHHHHHHHHccCCCceeEEEEEeecCCccHHHHHHHHHhhcCcceEEE
Confidence            9999999999999999999999999999999999999999999885   5699999999999999999999999999999


Q ss_pred             ccccCCCCCCCCCCCCCccHHHHHHHHHhCC---CCCccChHHHHHHHHHHHHHhCCCCCCCcccccccccccccCCC
Q 015894          324 SVSGLGGCPYAKGASGNVATEDVVYMLNGLG---VRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANASKL  398 (398)
Q Consensus       324 Sv~GlGecp~a~graGNa~lE~vv~~L~~~G---i~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~f~~~~s~~  398 (398)
                      |++|+||      |+||++||+|+++|.-.|   +...+|+.+|.++.++++++.++++|+++||+|.++|+ |+||+
T Consensus       283 ~i~GiGE------RtGn~~L~~v~m~my~~g~~~vs~~y~~~dlr~I~~mVed~~~i~v~p~~pi~G~~~Ft-h~SGi  353 (560)
T KOG2367|consen  283 TINGIGE------RTGNAPLEEVVMAMYCRGPDYVSGNYTFIDLREIENMVEDCTGINVPPHKPIVGANAFT-HESGI  353 (560)
T ss_pred             Eeecccc------ccCCCCHHHHHHHheecCchhcCCccccccHHHHHHHHHHhhcCCCCCCCccccceeEe-ecccc
Confidence            9999999      999999999999999888   88899999999999999999999999999999999999 99996

>cd07947 DRE_TIM_Re_CS Clostridium kluyveri Re-citrate synthase and related proteins, catalytic TIM barrel domain

Probab=100.00  E-value=1e-53  Score=416.28  Aligned_cols=255  Identities=22%  Similarity=0.268  Sum_probs=229.1

Q ss_pred             cEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcC-----CCEEEEecCCCCCcccCCCCHHHHHHHHHhcc-CCcEEEE
Q 015894           98 VKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSG-----LAVVEATSFVSPKWVPQLADAKDVMAAIQNVE-GARFPVL  171 (398)
Q Consensus        98 I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aG-----v~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~-~~~l~~l  171 (398)
                      |+|+|+|||||+|.++.. ++++|++|++.|.++|     |+.||+++|++       +|.+++.+.++... ...+.++
T Consensus         1 i~i~d~tlRDG~Q~~~~~-~~~~Kv~i~~~L~~~G~~~~~v~~IE~~s~~~-------~d~~~v~~~~~~~~~~~~v~~~   72 (279)
T cd07947           1 IWITDTTFRDGQQARPPY-TVEQIVKIYDYLHELGGGSGVIRQTEFFLYTE-------KDREAVEACLDRGYKFPEVTGW   72 (279)
T ss_pred             CEEEeCCCCCcCCCCCCC-CHHHHHHHHHHHHHcCCCCCccceEEecCcCh-------HHHHHHHHHHHcCCCCCEEEEE
Confidence            679999999999999875 9999999999999999     99999987654       57788887776422 3455665


Q ss_pred             e-CCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCH---
Q 015894          172 T-PNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPP---  247 (398)
Q Consensus       172 ~-~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~---  247 (398)
                      . +|.+|+++|+++|++.|.+++++||.|++.|+|+|++++++.+.+++++||++|+.|++++.      +.+|.++   
T Consensus        73 ~r~~~~die~A~~~g~~~v~i~~s~S~~~~~~~~~~t~~e~l~~~~~~v~~a~~~g~~v~~~~e------d~~r~d~~~~  146 (279)
T cd07947          73 IRANKEDLKLVKEMGLKETGILMSVSDYHIFKKLKMTREEAMEKYLEIVEEALDHGIKPRCHLE------DITRADIYGF  146 (279)
T ss_pred             ecCCHHHHHHHHHcCcCEEEEEEcCCHHHHHHHhCcCHHHHHHHHHHHHHHHHHCCCeEEEEEE------cccCCCcccc
Confidence            5 58999999999999999999999999999999999999999999999999999999986664      5566666   


Q ss_pred             --HHHHHHHHHHHhCCCC-EEEEccCcCcCCH-------HHHHHHHHHHHhh--CCCCeEEEEeCCccchHHHHHHHHHH
Q 015894          248 --SKVAYVSKQLYDMGCS-EISLGDTIGVGTP-------GTVIPMLEAVLDA--VPVDKLAVHFHDTYGQALSNILASLQ  315 (398)
Q Consensus       248 --~~l~~~a~~l~~~Gad-~I~L~DT~G~~~P-------~~v~~lv~~l~~~--~p~~~l~~H~Hnd~GlA~ANalaAl~  315 (398)
                        +++.++++.+.++|++ +|+|+||+|.++|       .+++++++.++++  +|+.+|++|+|||+|||+||+++|++
T Consensus       147 v~~~~~~~~~~~~~~G~~~~i~l~DTvG~a~P~~~~~~p~~v~~l~~~l~~~~~~p~~~l~~H~Hn~~Gla~AN~laA~~  226 (279)
T cd07947         147 VLPFVNKLMKLSKESGIPVKIRLCDTLGYGVPYPGASLPRSVPKIIYGLRKDCGVPSENLEWHGHNDFYKAVANAVAAWL  226 (279)
T ss_pred             hHHHHHHHHHHHHHCCCCEEEEeccCCCcCCccccccchHHHHHHHHHHHHhcCCCCceEEEEecCCCChHHHHHHHHHH
Confidence              3666777777779999 8999999999988       6899999999988  57778999999999999999999999


Q ss_pred             hCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhC-CCCCccChHHHHHHHHHHH
Q 015894          316 MGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGL-GVRTNVDIRKLMIAGDFIC  372 (398)
Q Consensus       316 aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~-Gi~t~iDl~~L~~~~~~v~  372 (398)
                      +||++||+|++|||+      |+||++||+++++|+.+ |+++++|+++|.+++++++
T Consensus       227 aG~~~vd~sv~GlGe------~aGN~~tE~lv~~l~~~~g~~t~idl~~l~~~~~~~~  278 (279)
T cd07947         227 YGASWVNCTLLGIGE------RTGNCPLEAMVIEYAQLKGNFDGMNLEVITEIAEYFE  278 (279)
T ss_pred             hCCCEEEEecccccc------cccchhHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHh
Confidence            999999999999999      99999999999999997 9999999999999999975

Re-citrate synthase (Re-CS) is a Clostridium kluyveri enzyme that converts acetyl-CoA and oxaloacetate to citrate. In most organisms, this reaction is catalyzed by Si-citrate synthase which is Si-face stereospecific with respect to C-2 of oxaloacetate, and phylogenetically unrelated to Re-citrate synthase. Re-citrate synthase is also found in a few other strictly anaerobic organisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with

>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain

Probab=100.00  E-value=1.9e-53  Score=411.36  Aligned_cols=250  Identities=24%  Similarity=0.350  Sum_probs=227.9

Q ss_pred             cEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCC-----CCCcccCCCCHHHHHHHHH-hccCCcEEEE
Q 015894           98 VKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFV-----SPKWVPQLADAKDVMAAIQ-NVEGARFPVL  171 (398)
Q Consensus        98 I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~-----~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l  171 (398)
                      |+|+|||||||+|.+++.|++++|++|++.|+++||+.||+|++.     +.++.|+..++++.++.++ ..+++++.++
T Consensus         1 i~i~D~TlRDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~~~~~~~~~~~~~~~e~i~~~~~~~~~~~~~~~   80 (263)
T cd07943           1 VYIHDVTLRDGMHAVRHQFTLEQVRAIARALDAAGVPLIEVGHGDGLGGSSLNYGFAAHTDEEYLEAAAEALKQAKLGVL   80 (263)
T ss_pred             CEEEeCCCCcCcccCCeecCHHHHHHHHHHHHHcCCCEEEeecCCCCCCcccccCCCCCChHHHHHHHHHhccCCEEEEE
Confidence            689999999999999999999999999999999999999999642     2344566677878777774 5688999988


Q ss_pred             e----CCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCH
Q 015894          172 T----PNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPP  247 (398)
Q Consensus       172 ~----~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~  247 (398)
                      +    .+.++++++.++|++.|++++++|+.+              .+.+++++||+.|++++++++.      .+++++
T Consensus        81 ~~~~~~~~~~i~~a~~~g~~~iri~~~~s~~~--------------~~~~~i~~ak~~G~~v~~~~~~------~~~~~~  140 (263)
T cd07943          81 LLPGIGTVDDLKMAADLGVDVVRVATHCTEAD--------------VSEQHIGAARKLGMDVVGFLMM------SHMASP  140 (263)
T ss_pred             ecCCccCHHHHHHHHHcCCCEEEEEechhhHH--------------HHHHHHHHHHHCCCeEEEEEEe------ccCCCH
Confidence            5    367899999999999999999998853              4578899999999999988874      357899


Q ss_pred             HHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeecccc
Q 015894          248 SKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSG  327 (398)
Q Consensus       248 ~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~G  327 (398)
                      +++.++++++.++|+++|+|+||+|.++|.+++++++.+++++|.++|++|+|||+|||+||+++|+++||++||+|++|
T Consensus       141 ~~~~~~~~~~~~~G~d~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hn~~GlA~AN~laAi~aGa~~vd~s~~G  220 (263)
T cd07943         141 EELAEQAKLMESYGADCVYVTDSAGAMLPDDVRERVRALREALDPTPVGFHGHNNLGLAVANSLAAVEAGATRIDGSLAG  220 (263)
T ss_pred             HHHHHHHHHHHHcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCCceEEEEecCCcchHHHHHHHHHHhCCCEEEeeccc
Confidence            99999999999999999999999999999999999999999998668999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHH
Q 015894          328 LGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICK  373 (398)
Q Consensus       328 lGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~  373 (398)
                      |||      |+||++||+++.+|+..|+++++|+++|.++++++.+
T Consensus       221 lG~------~aGN~~~E~lv~~L~~~g~~~~idl~~l~~~~~~~~~  260 (263)
T cd07943         221 LGA------GAGNTPLEVLVAVLERMGIETGIDLYKLMDAAEDLVR  260 (263)
T ss_pred             ccC------CcCCccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHh
Confidence            999      9999999999999999999999999999999999765

4-hydroxy 2-ketovalerate aldolase (Also known as 4-hydroxy-2-ketovalerate aldolase and 4-hydroxy-2-oxopentanoate aldolase (HOA)) converts 4-hydroxy-2-oxopentanoate to acetaldehyde and pyruvate, the penultimate step in the meta-cleavage pathway for the degradation of phenols, cresols and catechol. This family includes the Escherichia coli MhpE aldolase, the Pseudomonas DmpG aldolase, and the Burkholderia xenovorans BphI pyruvate aldolase. In Pseudomonas, the DmpG aldolase tightly associates with a dehydrogenase (DmpF ) and is inactive without it. HOA has a canonical TIM-barrel fold with a C-terminal extension that forms a funnel leading to the active site. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate

>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain

Probab=100.00  E-value=1.5e-53  Score=414.39  Aligned_cols=258  Identities=22%  Similarity=0.286  Sum_probs=230.4

Q ss_pred             EEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCC-CCCcccCCCCHHHHHHHHHhc--cCCcEEEEeC---
Q 015894          100 IVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFV-SPKWVPQLADAKDVMAAIQNV--EGARFPVLTP---  173 (398)
Q Consensus       100 i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~-~~~~~p~~~D~~~v~~~i~~~--~~~~l~~l~~---  173 (398)
                      |+|||||||+|++++.|++++|++|++.|+++||+.||+|++. +|+      +.+ .++.++++  +++++.++++   
T Consensus         1 i~D~TLRDG~Q~~~~~~s~e~k~~i~~~L~~~Gv~~IE~G~~~~~~~------~~~-~~~~~~~~~~~~~~~~~~~~~~~   73 (273)
T cd07941           1 IYDTTLRDGTQGEGISFSVEDKLRIARKLDELGVDYIEGGWPGSNPK------DTE-FFARAKKLKLKHAKLAAFGSTRR   73 (273)
T ss_pred             CCcCCCCCcCCCCCCCCCHHHHHHHHHHHHHcCCCEEEecCCcCCHH------HHH-HHHHHHHcCCCCcEEEEEecccc
Confidence            5899999999999999999999999999999999999999954 443      222 23344332  4788887764   


Q ss_pred             ------CHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCH
Q 015894          174 ------NLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPP  247 (398)
Q Consensus       174 ------n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~  247 (398)
                            +..+++.++++|++.|+++.++||.|.+.++|+++++.++.+.+.+++||++|+.|.++.+. |  .+.+++++
T Consensus        74 ~~i~~~~~~~~~~a~~~g~~~i~i~~~~sd~~~~~~~~~~~~~~~~~~~~~i~~ak~~G~~v~~~~~~-~--~d~~~~~~  150 (273)
T cd07941          74 AGVKAEEDPNLQALLEAGTPVVTIFGKSWDLHVTEALGTTLEENLAMIRDSVAYLKSHGREVIFDAEH-F--FDGYKANP  150 (273)
T ss_pred             cCCCccchHHHHHHHhCCCCEEEEEEcCCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEeEEe-c--cccCCCCH
Confidence                  23478899999999999999999999999999999999999999999999999999876443 3  24568899


Q ss_pred             HHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeecccc
Q 015894          248 SKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSG  327 (398)
Q Consensus       248 ~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~G  327 (398)
                      +++.++++.+.++|+++|+|+||+|.++|.+++++++.+++++|+++|++|+|||+|||+||+++|+++||++||+|++|
T Consensus       151 ~~~~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~s~~G  230 (273)
T cd07941         151 EYALATLKAAAEAGADWLVLCDTNGGTLPHEIAEIVKEVRERLPGVPLGIHAHNDSGLAVANSLAAVEAGATQVQGTING  230 (273)
T ss_pred             HHHHHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhCCCCeeEEEecCCCCcHHHHHHHHHHcCCCEEEEeccc
Confidence            99999999999999999999999999999999999999999999889999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCccHHHHHHHHH-hCCCC--CccChHHHHHHHHHHHH
Q 015894          328 LGGCPYAKGASGNVATEDVVYMLN-GLGVR--TNVDIRKLMIAGDFICK  373 (398)
Q Consensus       328 lGecp~a~graGNa~lE~vv~~L~-~~Gi~--t~iDl~~L~~~~~~v~~  373 (398)
                      |||      |+||+++|+++.+|+ .+|++  +++|+++|.++++++++
T Consensus       231 lGe------raGn~~~e~~~~~L~~~~~~~~~~~~~~~~l~~~~~~v~~  273 (273)
T cd07941         231 YGE------RCGNANLCSIIPNLQLKMGYECLPEENLKKLTELSRFVSE  273 (273)
T ss_pred             ccc------ccccccHHHHHHHHHhccCCCCcCccCHHHHHHHHHHHhC
Confidence            999      999999999999998 46765  48999999999999863

Desulfobacterium autotrophicum LeuA3 is sequence-similar to alpha-isopropylmalate synthase (LeuA) but its exact function is unknown. Members of this family have an N-terminal TIM barrel domain that belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of in

>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain

Probab=100.00  E-value=3e-52  Score=405.65  Aligned_cols=249  Identities=21%  Similarity=0.275  Sum_probs=227.0

Q ss_pred             EEeCCCcccCCCC-CCCCCHHHHHHHHHHHHhcCCCEEEEecCCC----CCcccCCCCHHHHHHHHH-hccCCcEEEEeC
Q 015894          100 IVEVGPRDGLQNE-KNIVPAVVKVELIKLLVSSGLAVVEATSFVS----PKWVPQLADAKDVMAAIQ-NVEGARFPVLTP  173 (398)
Q Consensus       100 i~D~TLRDG~Q~~-~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~----~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~  173 (398)
                      |+|||||||+|++ +..|++++|++|++.|+++||+.||+|+++.    .++.  ..++++.++.++ ..+++++.+|+|
T Consensus         1 i~DtTlRDG~Qs~~~~~~~~~~~~~ia~~L~~~Gv~~iE~G~~a~~~~~~~~~--~~~~~e~i~~~~~~~~~~~l~~~~r   78 (275)
T cd07937           1 ITDTTLRDAHQSLLATRMRTEDMLPIAEALDEAGFFSLEVWGGATFDVCMRFL--NEDPWERLRELRKAMPNTPLQMLLR   78 (275)
T ss_pred             CCcCcccchhhchhceeccHHHHHHHHHHHHHcCCCEEEccCCcchhhhcccc--CCCHHHHHHHHHHhCCCCceehhcc
Confidence            5799999999998 7999999999999999999999999998753    2222  356677777776 468899999987


Q ss_pred             C--------------HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecC
Q 015894          174 N--------------LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGC  239 (398)
Q Consensus       174 n--------------~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~  239 (398)
                      .              ..+++++.++|++.|+++++.|+              ++.+.+.+++||++|+.|.+++++++  
T Consensus        79 ~~~~~~~~~~p~~~~~~di~~~~~~g~~~iri~~~~~~--------------~~~~~~~i~~ak~~G~~v~~~i~~~~--  142 (275)
T cd07937          79 GQNLVGYRHYPDDVVELFVEKAAKNGIDIFRIFDALND--------------VRNLEVAIKAVKKAGKHVEGAICYTG--  142 (275)
T ss_pred             cccccCccCCCcHHHHHHHHHHHHcCCCEEEEeecCCh--------------HHHHHHHHHHHHHCCCeEEEEEEecC--
Confidence            3              45789999999999999999987              47788999999999999998887654  


Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCC
Q 015894          240 PVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGIS  319 (398)
Q Consensus       240 ~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~  319 (398)
                        .++++++++.++++++.++|+++|+|+||+|.++|.+++++++.+++++| ++|++|+|||+|||+||+++|+++||+
T Consensus       143 --~~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~-~~l~~H~Hnd~GlA~aN~laA~~aGa~  219 (275)
T cd07937         143 --SPVHTLEYYVKLAKELEDMGADSICIKDMAGLLTPYAAYELVKALKKEVG-LPIHLHTHDTSGLAVATYLAAAEAGVD  219 (275)
T ss_pred             --CCCCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhCC-CeEEEEecCCCChHHHHHHHHHHhCCC
Confidence              47899999999999999999999999999999999999999999999998 789999999999999999999999999


Q ss_pred             EEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHh
Q 015894          320 TVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHL  375 (398)
Q Consensus       320 ~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~  375 (398)
                      +||+|++||||      |+||++||+++.+|+..|+++++|+++|.+++++++++.
T Consensus       220 ~vd~sv~GlG~------~aGN~~~E~l~~~L~~~g~~~~~dl~~l~~~~~~v~~~~  269 (275)
T cd07937         220 IVDTAISPLSG------GTSQPSTESMVAALRGTGRDTGLDLEKLEEISEYFEEVR  269 (275)
T ss_pred             EEEEecccccC------CcCChhHHHHHHHHHccCCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999      999999999999999999999999999999999999876

This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex

>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated

Probab=100.00  E-value=1.5e-50  Score=403.76  Aligned_cols=254  Identities=26%  Similarity=0.354  Sum_probs=225.2

Q ss_pred             CccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCC-----CC-cccCCCCHHHHHHHH-HhccCCcE
Q 015894           96 GFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVS-----PK-WVPQLADAKDVMAAI-QNVEGARF  168 (398)
Q Consensus        96 ~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~-----~~-~~p~~~D~~~v~~~i-~~~~~~~l  168 (398)
                      ++|+|+|||||||+|..++.|++++|++|++.|+++||+.||+|+...     -. ..|.. +.++.++.+ +..+++++
T Consensus         2 ~~i~I~D~TLRDG~q~~~~~f~~~~~~~i~~~L~~aGv~~IEvg~~~g~g~~s~~~g~~~~-~~~e~i~~~~~~~~~~~~   80 (337)
T PRK08195          2 KKIYISDVTLRDGMHAVRHQYTLEQVRAIARALDAAGVPVIEVTHGDGLGGSSFNYGFGAH-TDEEYIEAAAEVVKQAKI   80 (337)
T ss_pred             CceEEEECCCCCcCcCCCCccCHHHHHHHHHHHHHcCCCEEEeecCCCCCCccccCCCCCC-CHHHHHHHHHHhCCCCEE
Confidence            469999999999999999999999999999999999999999985321     11 11222 345666666 46788999


Q ss_pred             EEEe-C---CHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC
Q 015894          169 PVLT-P---NLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGM  244 (398)
Q Consensus       169 ~~l~-~---n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r  244 (398)
                      .+|. +   +.++++++.++|++.||++++.++.              +.+.+.+++||++|++|.++++++      ++
T Consensus        81 ~~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e~--------------~~~~~~i~~ak~~G~~v~~~l~~a------~~  140 (337)
T PRK08195         81 AALLLPGIGTVDDLKMAYDAGVRVVRVATHCTEA--------------DVSEQHIGLARELGMDTVGFLMMS------HM  140 (337)
T ss_pred             EEEeccCcccHHHHHHHHHcCCCEEEEEEecchH--------------HHHHHHHHHHHHCCCeEEEEEEec------cC
Confidence            9865 3   6789999999999999999877664              346788999999999999988854      57


Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhC-CCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          245 VPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAV-PVDKLAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       245 ~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~-p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      ++++++.++++.+.++|+++|+|+||+|.++|.+++++++.+++++ |+++|+||+|||+|||+||+++|+++||++||+
T Consensus       141 ~~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~  220 (337)
T PRK08195        141 APPEKLAEQAKLMESYGAQCVYVVDSAGALLPEDVRDRVRALRAALKPDTQVGFHGHNNLGLGVANSLAAVEAGATRIDG  220 (337)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEeCCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCcchHHHHHHHHHHhCCCEEEe
Confidence            8999999999999999999999999999999999999999999999 688999999999999999999999999999999


Q ss_pred             ccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhC
Q 015894          324 SVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLG  376 (398)
Q Consensus       324 Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g  376 (398)
                      |+.|||+      ++||++||+++.+|+.+|+++++|+.+|.++++++..-+-
T Consensus       221 Sl~GlG~------~aGN~~tE~lv~~L~~~g~~tgidl~~l~~~a~~~~~p~~  267 (337)
T PRK08195        221 SLAGLGA------GAGNTPLEVLVAVLDRMGWETGVDLYKLMDAAEDLVRPLM  267 (337)
T ss_pred             cChhhcc------cccCccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHhhhc
Confidence            9999999      9999999999999999999999999999999998776553

>PRK12330 oxaloacetate decarboxylase; Provisional

Probab=100.00  E-value=6.4e-51  Score=421.23  Aligned_cols=277  Identities=20%  Similarity=0.295  Sum_probs=246.1

Q ss_pred             CCCccEEEeCCCcccCCCCC-CCCCHHHHHHHHHHHHhcCCCEEEEe----cCCCCCcccCCCCHHHHHHHHH-hccCCc
Q 015894           94 VPGFVKIVEVGPRDGLQNEK-NIVPAVVKVELIKLLVSSGLAVVEAT----SFVSPKWVPQLADAKDVMAAIQ-NVEGAR  167 (398)
Q Consensus        94 ~p~~I~i~D~TLRDG~Q~~~-~~~~~~~k~~ia~~L~~aGv~~IEvG----~~~~~~~~p~~~D~~~v~~~i~-~~~~~~  167 (398)
                      |+++|+|+|||||||+|+++ .+|++++++.|++.|+++|++.||+|    |.++-++.  -+|+|+.++.++ .+|+++
T Consensus         1 ~~~~i~i~DTTLRDG~QSl~atr~~t~d~l~ia~~ld~~G~~siE~~GGatfd~~~rfl--~Edpwerlr~lr~~~~nt~   78 (499)
T PRK12330          1 MPRKIGVTELALRDAHQSLMATRMAMEDMVGACEDIDNAGYWSVECWGGATFDACIRFL--NEDPWERLRTFRKLMPNSR   78 (499)
T ss_pred             CCCCcEEEECCccchhhcccCccCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhccc--CCCHHHHHHHHHHhCCCCe
Confidence            56789999999999999988 89999999999999999999999999    33322222  268999999998 579999


Q ss_pred             EEEEeC--CH------------hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 015894          168 FPVLTP--NL------------KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYL  233 (398)
Q Consensus       168 l~~l~~--n~------------~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l  233 (398)
                      +++|+|  |.            .+++.++++|+|.||||+++||+              ++++.+++.+|+.|..++++|
T Consensus        79 lqmL~Rg~N~vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lndv--------------~nl~~ai~~vk~ag~~~~~~i  144 (499)
T PRK12330         79 LQMLLRGQNLLGYRHYEDEVVDRFVEKSAENGMDVFRVFDALNDP--------------RNLEHAMKAVKKVGKHAQGTI  144 (499)
T ss_pred             EEEEEcccccCCccCcchhHHHHHHHHHHHcCCCEEEEEecCChH--------------HHHHHHHHHHHHhCCeEEEEE
Confidence            999997  21            35789999999999999999986              566778899999999999999


Q ss_pred             eeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHH
Q 015894          234 SCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILA  312 (398)
Q Consensus       234 ~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANala  312 (398)
                      +++.+ |   .+++++++++++++.++|+++|+|+||+|+++|.+++++|+++++++| +++|++|+|||+|||+||+++
T Consensus       145 ~yt~s-p---~~t~e~~~~~a~~l~~~Gad~I~IkDtaGll~P~~~~~LV~~Lk~~~~~~ipI~~H~Hnt~GlA~An~la  220 (499)
T PRK12330        145 CYTVS-P---IHTVEGFVEQAKRLLDMGADSICIKDMAALLKPQPAYDIVKGIKEACGEDTRINLHCHSTTGVTLVSLMK  220 (499)
T ss_pred             EEecC-C---CCCHHHHHHHHHHHHHcCCCEEEeCCCccCCCHHHHHHHHHHHHHhCCCCCeEEEEeCCCCCcHHHHHHH
Confidence            97652 3   468999999999999999999999999999999999999999999996 889999999999999999999


Q ss_pred             HHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHh-----------CCCCCC
Q 015894          313 SLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHL-----------GRTSGS  381 (398)
Q Consensus       313 Al~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~-----------g~~~~~  381 (398)
                      |+++||++||+|++|||+      ++||++||+++.+|+.+|+++++|+++|.++++++.++.           +...+.
T Consensus       221 AieAGad~vDtai~Glg~------~aGn~atE~vv~~L~~~g~~tgiDl~~L~~i~~~~~~vr~~y~~~~~~~~~~d~~v  294 (499)
T PRK12330        221 AIEAGVDVVDTAISSMSL------GPGHNPTESLVEMLEGTGYTTKLDMDRLLKIRDHFKKVRPKYKEFESKTTGVETEI  294 (499)
T ss_pred             HHHcCCCEEEeecccccc------cccchhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhcccccccCCCCcc
Confidence            999999999999999999      999999999999999999999999999999999988664           455556


Q ss_pred             Ccc-cccccccccccCC
Q 015894          382 KTA-IALSKTSTANASK  397 (398)
Q Consensus       382 ~~p-ivG~~~f~~~~s~  397 (398)
                      .++ +.|...|. |+|+
T Consensus       295 ~~~qiPGGm~sn-l~~Q  310 (499)
T PRK12330        295 FKSQIPGGMLSN-MESQ  310 (499)
T ss_pred             ccCCCCCCchhh-HHHH
Confidence            666 88888877 7664

>PRK12331 oxaloacetate decarboxylase; Provisional

Probab=100.00  E-value=1.3e-50  Score=416.62  Aligned_cols=253  Identities=22%  Similarity=0.300  Sum_probs=227.2

Q ss_pred             CccEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHHhcCCCEEEEe----cCCCCCcccCCCCHHHHHHHHHh-ccCCcEE
Q 015894           96 GFVKIVEVGPRDGLQNE-KNIVPAVVKVELIKLLVSSGLAVVEAT----SFVSPKWVPQLADAKDVMAAIQN-VEGARFP  169 (398)
Q Consensus        96 ~~I~i~D~TLRDG~Q~~-~~~~~~~~k~~ia~~L~~aGv~~IEvG----~~~~~~~~p~~~D~~~v~~~i~~-~~~~~l~  169 (398)
                      ++|+|+|||||||+|++ +..|++++|++|++.|+++|++.||+|    |.++-.++  -.|++++++.+++ +++++++
T Consensus         2 ~~V~I~DtTlRDG~Qs~~~~~~~t~dkl~ia~~Ld~~Gv~~IE~~ggatf~~~~~f~--~e~p~e~l~~l~~~~~~~~l~   79 (448)
T PRK12331          2 TKIKITETVLRDGQQSLIATRMTTEEMLPILEKLDNAGYHSLEMWGGATFDACLRFL--NEDPWERLRKIRKAVKKTKLQ   79 (448)
T ss_pred             CccEEEECCCCccccCcCCcccCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccC--CCCHHHHHHHHHHhCCCCEEE
Confidence            36999999999999998 679999999999999999999999998    32221111  1468899998875 5899999


Q ss_pred             EEeC--CH------------hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEee
Q 015894          170 VLTP--NL------------KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSC  235 (398)
Q Consensus       170 ~l~~--n~------------~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~  235 (398)
                      +|+|  |.            .++++|+++|++.|++|+++||.+              ++.+++++||++|+.+++++++
T Consensus        80 ~l~r~~N~~G~~~~pddvv~~~v~~A~~~Gvd~irif~~lnd~~--------------n~~~~v~~ak~~G~~v~~~i~~  145 (448)
T PRK12331         80 MLLRGQNLLGYRNYADDVVESFVQKSVENGIDIIRIFDALNDVR--------------NLETAVKATKKAGGHAQVAISY  145 (448)
T ss_pred             EEeccccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcHH--------------HHHHHHHHHHHcCCeEEEEEEe
Confidence            8875  43            345899999999999999999963              3667899999999999999998


Q ss_pred             eecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHH
Q 015894          236 VVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQ  315 (398)
Q Consensus       236 ~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~  315 (398)
                      +++ |   +++++++.++++++.++|+++|+|+||+|+++|.+++++|++++++++ ++|++|+|||+|||+||+++|++
T Consensus       146 t~~-p---~~~~~~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~lv~alk~~~~-~pi~~H~Hnt~GlA~AN~laAie  220 (448)
T PRK12331        146 TTS-P---VHTIDYFVKLAKEMQEMGADSICIKDMAGILTPYVAYELVKRIKEAVT-VPLEVHTHATSGIAEMTYLKAIE  220 (448)
T ss_pred             ecC-C---CCCHHHHHHHHHHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHhcC-CeEEEEecCCCCcHHHHHHHHHH
Confidence            764 3   689999999999999999999999999999999999999999999987 79999999999999999999999


Q ss_pred             hCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHh
Q 015894          316 MGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHL  375 (398)
Q Consensus       316 aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~  375 (398)
                      +||++||+|++|||+      |+||++||+++.+|+..|+++++|+++|.+++++++++.
T Consensus       221 aGad~vD~sv~glg~------gaGN~~tE~lv~~L~~~g~~tgidl~~L~~~~~~~~~~r  274 (448)
T PRK12331        221 AGADIIDTAISPFAG------GTSQPATESMVAALQDLGYDTGLDLEELSEIAEYFNPIR  274 (448)
T ss_pred             cCCCEEEeeccccCC------CcCCHhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Confidence            999999999999999      999999999999999999999999999999999997664

>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain

Probab=100.00  E-value=1.5e-50  Score=392.00  Aligned_cols=249  Identities=17%  Similarity=0.205  Sum_probs=220.1

Q ss_pred             EEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcc----cCCCCHHHHHHHHHhc-cCCcEEEEeCC
Q 015894          100 IVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWV----PQLADAKDVMAAIQNV-EGARFPVLTPN  174 (398)
Q Consensus       100 i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~----p~~~D~~~v~~~i~~~-~~~~l~~l~~n  174 (398)
                      |+|||||||+|.+++.|+.++|++|++.|+++||+.||+|++......    ..+.|.+.+.+..+.. +++++.++++.
T Consensus         1 i~D~TLRDG~q~~~~~f~~~~~~~ia~~L~~~GVd~IEvG~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   80 (266)
T cd07944           1 ILDCTLRDGGYVNNWDFGDEFVKAIYRALAAAGIDYVEIGYRSSPEKEFKGKSAFCDDEFLRRLLGDSKGNTKIAVMVDY   80 (266)
T ss_pred             CccCCcccCccccCccCCHHHHHHHHHHHHHCCCCEEEeecCCCCccccCCCccCCCHHHHHHHHhhhccCCEEEEEECC
Confidence            589999999999999999999999999999999999999998653211    1233555555554544 48999999864


Q ss_pred             ----HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHH
Q 015894          175 ----LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKV  250 (398)
Q Consensus       175 ----~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l  250 (398)
                          ..+++.+.++|++.|+++++.++              ++.+.+++++||++|+.|.+++++++      +++++++
T Consensus        81 ~~~~~~~l~~a~~~gv~~iri~~~~~~--------------~~~~~~~i~~ak~~G~~v~~~~~~a~------~~~~~~~  140 (266)
T cd07944          81 GNDDIDLLEPASGSVVDMIRVAFHKHE--------------FDEALPLIKAIKEKGYEVFFNLMAIS------GYSDEEL  140 (266)
T ss_pred             CCCCHHHHHHHhcCCcCEEEEeccccc--------------HHHHHHHHHHHHHCCCeEEEEEEeec------CCCHHHH
Confidence                47899999999999999987653              57788999999999999998888654      5899999


Q ss_pred             HHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCC
Q 015894          251 AYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLG  329 (398)
Q Consensus       251 ~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlG  329 (398)
                      .++++++.++|+++|+|+||+|.++|.+++++++.++++++ +++|++|+|||+|||+||+++|+++||++||+|++|||
T Consensus       141 ~~~~~~~~~~g~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~i~~H~Hn~~Gla~AN~laA~~aGa~~vd~s~~G~G  220 (266)
T cd07944         141 LELLELVNEIKPDVFYIVDSFGSMYPEDIKRIISLLRSNLDKDIKLGFHAHNNLQLALANTLEAIELGVEIIDATVYGMG  220 (266)
T ss_pred             HHHHHHHHhCCCCEEEEecCCCCCCHHHHHHHHHHHHHhcCCCceEEEEeCCCccHHHHHHHHHHHcCCCEEEEecccCC
Confidence            99999999999999999999999999999999999999987 48999999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHH-HHHHHHh
Q 015894          330 GCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAG-DFICKHL  375 (398)
Q Consensus       330 ecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~-~~v~~~~  375 (398)
                      +      |+||++||+++.+|+.+ +++++|+++|.+++ +++....
T Consensus       221 ~------~aGN~~~E~~v~~l~~~-~~~~~dl~~l~~~~~~~~~~~~  260 (266)
T cd07944         221 R------GAGNLPTELLLDYLNNK-FGKKYNLEPVLELIDEYIAPLK  260 (266)
T ss_pred             C------CcCcHHHHHHHHHHHHh-hccCCCHHHHHHHHHHHHHHHH
Confidence            9      99999999999999988 78899999999999 7777655

This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t

>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase

Probab=100.00  E-value=4.6e-50  Score=399.58  Aligned_cols=254  Identities=27%  Similarity=0.359  Sum_probs=222.7

Q ss_pred             CccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCC-----CCCc-ccCCCCHHHHHHHHHhccCCcEE
Q 015894           96 GFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFV-----SPKW-VPQLADAKDVMAAIQNVEGARFP  169 (398)
Q Consensus        96 ~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~-----~~~~-~p~~~D~~~v~~~i~~~~~~~l~  169 (398)
                      ++|+|+|||||||+|..++.|++++|++|++.|+++||+.||+|+..     +-.+ .|...|.+.+.+..+.++++++.
T Consensus         1 ~~i~i~D~TLRDG~q~~~~~f~~~~~~~ia~~Ld~aGV~~IEvg~g~gl~g~s~~~G~~~~~~~e~i~~~~~~~~~~~~~   80 (333)
T TIGR03217         1 KKLYITDVTLRDGMHAIRHQFTIEQVRAIAAALDEAGVDAIEVTHGDGLGGSSFNYGFSAHTDLEYIEAAADVVKRAKVA   80 (333)
T ss_pred             CCcEEEECCCCCCCcCCCCcCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCccccCCCCCCChHHHHHHHHHhCCCCEEE
Confidence            36999999999999999999999999999999999999999998431     1111 12333444444444567889999


Q ss_pred             EEe-C---CHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCC
Q 015894          170 VLT-P---NLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMV  245 (398)
Q Consensus       170 ~l~-~---n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~  245 (398)
                      +++ +   +.++++.|.++|++.||++.+.++.              +.+.+.++++|++|++|.++++++      .++
T Consensus        81 ~ll~pg~~~~~dl~~a~~~gvd~iri~~~~~e~--------------d~~~~~i~~ak~~G~~v~~~l~~s------~~~  140 (333)
T TIGR03217        81 VLLLPGIGTVHDLKAAYDAGARTVRVATHCTEA--------------DVSEQHIGMARELGMDTVGFLMMS------HMT  140 (333)
T ss_pred             EEeccCccCHHHHHHHHHCCCCEEEEEeccchH--------------HHHHHHHHHHHHcCCeEEEEEEcc------cCC
Confidence            776 4   6789999999999999999887764              345688999999999999988864      468


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894          246 PPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       246 ~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S  324 (398)
                      ++++++++++.+.++|++.|+|+||+|.++|.++++++++++++++ +++|++|+|||+|||+||+++|+++||++||+|
T Consensus       141 ~~e~l~~~a~~~~~~Ga~~i~i~DT~G~~~P~~v~~~v~~l~~~l~~~i~ig~H~HnnlGla~ANslaAi~aGa~~iD~S  220 (333)
T TIGR03217       141 PPEKLAEQAKLMESYGADCVYIVDSAGAMLPDDVRDRVRALKAVLKPETQVGFHAHHNLSLAVANSIAAIEAGATRIDAS  220 (333)
T ss_pred             CHHHHHHHHHHHHhcCCCEEEEccCCCCCCHHHHHHHHHHHHHhCCCCceEEEEeCCCCchHHHHHHHHHHhCCCEEEee
Confidence            9999999999999999999999999999999999999999999985 689999999999999999999999999999999


Q ss_pred             cccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHh
Q 015894          325 VSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHL  375 (398)
Q Consensus       325 v~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~  375 (398)
                      +.|||+      ++||++||+++.+|+.+|+++++|+.+|.++++.+-.-+
T Consensus       221 l~G~G~------~aGN~~~E~lv~~l~~~g~~tgidl~~l~~~a~~~v~p~  265 (333)
T TIGR03217       221 LRGLGA------GAGNAPLEVFVAVLDRLGWNTGCDLFKLMDAAEDIVRPL  265 (333)
T ss_pred             cccccc------cccCccHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHhh
Confidence            999999      999999999999999999999999999999988765444

Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.

>PRK14041 oxaloacetate decarboxylase; Provisional

Probab=100.00  E-value=5.7e-50  Score=412.84  Aligned_cols=252  Identities=19%  Similarity=0.256  Sum_probs=227.8

Q ss_pred             ccEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHHhcCCCEEEEecCCC----CCcccCCCCHHHHHHHHHh-ccCCcEEE
Q 015894           97 FVKIVEVGPRDGLQNE-KNIVPAVVKVELIKLLVSSGLAVVEATSFVS----PKWVPQLADAKDVMAAIQN-VEGARFPV  170 (398)
Q Consensus        97 ~I~i~D~TLRDG~Q~~-~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~----~~~~p~~~D~~~v~~~i~~-~~~~~l~~  170 (398)
                      +|+|+|||||||+|+. +..|++++|++|++.|+++|++.||+|..+.    ..++  -.|++++++.+++ ++++++++
T Consensus         2 ~V~I~DtTlRDG~Qs~~~~~~~t~dkl~Ia~~Ld~~Gv~~IE~~ggatfd~~~~Fl--~e~p~e~l~~l~~~~~~~~l~~   79 (467)
T PRK14041          2 KVMFVDTTLRDGHQSLIATRMRTEDMLPALEAFDRMGFYSMEVWGGATFDVCVRFL--NENPWERLKEIRKRLKNTKIQM   79 (467)
T ss_pred             ceEEEECCCCccccCcCCccCCHHHHHHHHHHHHHcCCCEEEecCCccchhhhccc--CCCHHHHHHHHHHhCCCCEEEE
Confidence            4899999999999998 4799999999999999999999999974321    2222  1478899998875 58999999


Q ss_pred             EeC--CHh-------h-----HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeee
Q 015894          171 LTP--NLK-------G-----FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCV  236 (398)
Q Consensus       171 l~~--n~~-------~-----ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~  236 (398)
                      |+|  |..       |     +++|+++|++.|++|+++||.              +++...+++||++|+.|+++++++
T Consensus        80 l~r~~N~~G~~~~~dDvv~~fv~~A~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~t  145 (467)
T PRK14041         80 LLRGQNLVGYRHYADDVVELFVKKVAEYGLDIIRIFDALNDI--------------RNLEKSIEVAKKHGAHVQGAISYT  145 (467)
T ss_pred             EeccccccCcccccchhhHHHHHHHHHCCcCEEEEEEeCCHH--------------HHHHHHHHHHHHCCCEEEEEEEec
Confidence            876  432       3     589999999999999999984              557788999999999999999998


Q ss_pred             ecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHh
Q 015894          237 VGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQM  316 (398)
Q Consensus       237 fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~a  316 (398)
                      ++ |   +++++++.++++++.++|+++|+|+||+|+++|.+++++|++++++++ ++|++|+|||+|||+||+++|+++
T Consensus       146 ~~-p---~~t~e~~~~~a~~l~~~Gad~I~i~Dt~G~l~P~~v~~Lv~~lk~~~~-vpI~~H~Hnt~GlA~AN~laAiea  220 (467)
T PRK14041        146 VS-P---VHTLEYYLEFARELVDMGVDSICIKDMAGLLTPKRAYELVKALKKKFG-VPVEVHSHCTTGLASLAYLAAVEA  220 (467)
T ss_pred             cC-C---CCCHHHHHHHHHHHHHcCCCEEEECCccCCcCHHHHHHHHHHHHHhcC-CceEEEecCCCCcHHHHHHHHHHh
Confidence            75 4   578999999999999999999999999999999999999999999997 789999999999999999999999


Q ss_pred             CCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHh
Q 015894          317 GISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHL  375 (398)
Q Consensus       317 Ga~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~  375 (398)
                      ||++||+|++|+|+      |+||++||+++.+|+.+|+++++|+++|.+++++++++.
T Consensus       221 Gad~vD~sv~~~g~------gagN~atE~lv~~L~~~g~~tgiDl~~L~~~~~~~~~vr  273 (467)
T PRK14041        221 GADMFDTAISPFSM------GTSQPPFESMYYAFRENGKETDFDRKALKFLVEYFTKVR  273 (467)
T ss_pred             CCCEEEeeccccCC------CCCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHH
Confidence            99999999999999      999999999999999999999999999999999998775

>PRK09282 pyruvate carboxylase subunit B; Validated

Probab=100.00  E-value=1.2e-48  Score=414.31  Aligned_cols=272  Identities=21%  Similarity=0.259  Sum_probs=245.3

Q ss_pred             CccEEEeCCCcccCCCCC-CCCCHHHHHHHHHHHHhcCCCEEEEe----cCCCCCcccCCCCHHHHHHHHHh-ccCCcEE
Q 015894           96 GFVKIVEVGPRDGLQNEK-NIVPAVVKVELIKLLVSSGLAVVEAT----SFVSPKWVPQLADAKDVMAAIQN-VEGARFP  169 (398)
Q Consensus        96 ~~I~i~D~TLRDG~Q~~~-~~~~~~~k~~ia~~L~~aGv~~IEvG----~~~~~~~~p~~~D~~~v~~~i~~-~~~~~l~  169 (398)
                      ++|.|+|||||||+|+.+ .+|++++|++|++.|+++|++.||+|    |.++.+++  ..|+|+.++.+++ +|+++++
T Consensus         2 ~~v~i~DtTlRDG~Qs~~atr~~t~d~l~ia~~l~~~G~~~iE~~ggatfd~~~rfl--~edp~e~l~~l~~~~~~~~l~   79 (592)
T PRK09282          2 KKVKITDTTLRDAHQSLLATRMRTEDMLPIAEKLDKVGFWSLEVWGGATFDVCIRYL--NEDPWERLRKLKKALPNTPLQ   79 (592)
T ss_pred             CccEEEECCCCccccccCCccCCHHHHHHHHHHHHHcCCCEEEecCCccchhhcccC--CccHHHHHHHHHHhCCCCEEE
Confidence            369999999999999996 68999999999999999999999998    33333332  2578888888874 5899999


Q ss_pred             EEeC--CHh------------hHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEee
Q 015894          170 VLTP--NLK------------GFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSC  235 (398)
Q Consensus       170 ~l~~--n~~------------~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~  235 (398)
                      +|+|  |..            ++++|.++|++.||+|+++||.              +++...+++||++|..+++++++
T Consensus        80 ~l~Rg~N~~gy~~ypd~vv~~~v~~A~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~  145 (592)
T PRK09282         80 MLLRGQNLVGYRHYPDDVVEKFVEKAAENGIDIFRIFDALNDV--------------RNMEVAIKAAKKAGAHVQGTISY  145 (592)
T ss_pred             EEeccccccccccccchhhHHHHHHHHHCCCCEEEEEEecChH--------------HHHHHHHHHHHHcCCEEEEEEEe
Confidence            9976  443            4789999999999999999985              56778899999999999999998


Q ss_pred             eecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHH
Q 015894          236 VVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQ  315 (398)
Q Consensus       236 ~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~  315 (398)
                      +++ |   .+++++++++++++.++|+++|+||||+|.++|.++++++++++++++ ++|++|+|||.|||+||+++|++
T Consensus       146 t~~-p---~~t~~~~~~~a~~l~~~Gad~I~i~Dt~G~~~P~~~~~lv~~lk~~~~-~pi~~H~Hnt~Gla~An~laAv~  220 (592)
T PRK09282        146 TTS-P---VHTIEKYVELAKELEEMGCDSICIKDMAGLLTPYAAYELVKALKEEVD-LPVQLHSHCTSGLAPMTYLKAVE  220 (592)
T ss_pred             ccC-C---CCCHHHHHHHHHHHHHcCCCEEEECCcCCCcCHHHHHHHHHHHHHhCC-CeEEEEEcCCCCcHHHHHHHHHH
Confidence            773 4   468999999999999999999999999999999999999999999997 78999999999999999999999


Q ss_pred             hCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCCC--CCCCccccccccccc
Q 015894          316 MGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRT--SGSKTAIALSKTSTA  393 (398)
Q Consensus       316 aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~~--~~~~~pivG~~~f~~  393 (398)
                      +||++||+|++|||+      |+||++||+++.+|+..|+++++|+.+|.+++++++++...-  +++..+..+.++|. 
T Consensus       221 aGad~vD~ai~g~g~------~agn~~~e~vv~~L~~~g~~~~idl~~l~~~s~~~~~~~~~y~~~~~~~~~~~~~v~~-  293 (592)
T PRK09282        221 AGVDIIDTAISPLAF------GTSQPPTESMVAALKGTPYDTGLDLELLFEIAEYFREVRKKYKQFESEFTIVDTRVLI-  293 (592)
T ss_pred             hCCCEEEeeccccCC------CcCCHhHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHHHHhhcCCCccccCCccEEE-
Confidence            999999999999999      999999999999999999999999999999999999988655  67888899999998 


Q ss_pred             cc
Q 015894          394 NA  395 (398)
Q Consensus       394 ~~  395 (398)
                      |+
T Consensus       294 ~~  295 (592)
T PRK09282        294 HQ  295 (592)
T ss_pred             Ec
Confidence            75

>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members

Probab=100.00  E-value=1.7e-49  Score=376.75  Aligned_cols=232  Identities=30%  Similarity=0.447  Sum_probs=201.6

Q ss_pred             cccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC-CHhhHHHHH--
Q 015894          106 RDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP-NLKGFEAAV--  182 (398)
Q Consensus       106 RDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~-n~~~ie~a~--  182 (398)
                      |||+|++++.|++++|++|++.|+++||++||+|++....     .+.+.+.+..+..++.++.++++ +.++++.++  
T Consensus         1 RDG~Q~~~~~~~~~~k~~i~~~L~~~Gv~~iEvg~~~~~~-----~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~   75 (237)
T PF00682_consen    1 RDGEQSNGVAFSTEEKLEIAKALDEAGVDYIEVGFPFASE-----DDFEQVRRLREALPNARLQALCRANEEDIERAVEA   75 (237)
T ss_dssp             THHHHHCSTT--HHHHHHHHHHHHHHTTSEEEEEHCTSSH-----HHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHHH
T ss_pred             CCcCcCCCCCcCHHHHHHHHHHHHHhCCCEEEEcccccCH-----HHHHHhhhhhhhhcccccceeeeehHHHHHHHHHh
Confidence            9999999999999999999999999999999999543221     23344444444667799999986 456666544  


Q ss_pred             --HcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC
Q 015894          183 --AAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM  260 (398)
Q Consensus       183 --~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~  260 (398)
                        ++|++.+++++++||.|.+.++++++++.++.+.++++++|++|+.|.      |++++.++++++++.++++++.++
T Consensus        76 ~~~~g~~~i~i~~~~s~~~~~~~~~~~~~~~~~~~~~~v~~ak~~g~~v~------~~~~~~~~~~~~~~~~~~~~~~~~  149 (237)
T PF00682_consen   76 AKEAGIDIIRIFISVSDLHIRKNLNKSREEALERIEEAVKYAKELGYEVA------FGCEDASRTDPEELLELAEALAEA  149 (237)
T ss_dssp             HHHTTSSEEEEEEETSHHHHHHHTCSHHHHHHHHHHHHHHHHHHTTSEEE------EEETTTGGSSHHHHHHHHHHHHHH
T ss_pred             hHhccCCEEEecCcccHHHHHHhhcCCHHHHHHHHHHHHHHHHhcCCceE------eCccccccccHHHHHHHHHHHHHc
Confidence              599999999999999999999999999999999999999999999995      556788899999999999999999


Q ss_pred             CCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCC
Q 015894          261 GCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGN  340 (398)
Q Consensus       261 Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGN  340 (398)
                      |+++|+|+||+|.++|.+++++++.+++++|.++|++|+|||+|||+||+++|+++||++||+|++|||+      |+||
T Consensus       150 g~~~i~l~Dt~G~~~P~~v~~lv~~~~~~~~~~~l~~H~Hnd~Gla~An~laA~~aGa~~id~t~~GlG~------~~Gn  223 (237)
T PF00682_consen  150 GADIIYLADTVGIMTPEDVAELVRALREALPDIPLGFHAHNDLGLAVANALAALEAGADRIDGTLGGLGE------RAGN  223 (237)
T ss_dssp             T-SEEEEEETTS-S-HHHHHHHHHHHHHHSTTSEEEEEEBBTTS-HHHHHHHHHHTT-SEEEEBGGGGSS------TTSB
T ss_pred             CCeEEEeeCccCCcCHHHHHHHHHHHHHhccCCeEEEEecCCccchhHHHHHHHHcCCCEEEccCccCCC------CCCC
Confidence            9999999999999999999999999999999889999999999999999999999999999999999999      9999


Q ss_pred             ccHHHHHHHHHhCC
Q 015894          341 VATEDVVYMLNGLG  354 (398)
Q Consensus       341 a~lE~vv~~L~~~G  354 (398)
                      ++||+++.+|+.+|
T Consensus       224 ~~le~lv~~L~~~g  237 (237)
T PF00682_consen  224 APLEELVAALERMG  237 (237)
T ss_dssp             -BHHHHHHHHHHT-
T ss_pred             ccHHHHHHHHhhcC
Confidence            99999999999876

are a sub-families of this Pfam.; InterPro: IPR000891 Pyruvate carboxylase (6.4.1.1 from EC) (PC), a member of the biotin-dependent enzyme family, is involved in the gluconeogenesis by mediating the carboxylation of pyruvate to oxaloacetate. Biotin-dependent carboxylase enzymes perform a two step reaction. Enzyme-bound biotin is first carboxylated by bicarbonate and ATP and the carboxyl group temporarily bound to biotin is subsequently transferred to an acceptor substrate such as pyruvate []. PC has three functional domains: a biotin carboxylase (BC) domain, a carboxyltransferase (CT) domain which perform the second part of the reaction and a biotinyl domain [, ]. The mechanism by which the carboxyl group is transferred from the carboxybiotin to the pyruvate is not well understood. The pyruvate carboxyltransferase domain is also found in other pyruvate binding enzymes and acetyl-CoA dependent enzymes suggesting that this domain can be associated with different enzymatic activities. This domain is found towards the N-terminal region of various aldolase enzymes. This N-terminal TIM barrel domain [] interacts with the C-terminal domain. The C-terminal DmpG_comm domain (IPR012425 from INTERPRO) is thought to promote heterodimerisation with members of IPR003361 from INTERPRO to form a bifunctional aldolase-dehydrogenase []. ; GO: 0003824 catalytic activity; PDB: 3MP5_E 3MP3_E 2CW6_E 3MP4_D 3HBL_A 3HB9_C 3HO8_A 3BG5_C 1YDN_B 3RMJ_A ....

>PRK14040 oxaloacetate decarboxylase; Provisional

Probab=100.00  E-value=7e-48  Score=407.87  Aligned_cols=257  Identities=22%  Similarity=0.257  Sum_probs=229.6

Q ss_pred             CCCccEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCC-cccC-CCCHHHHHHHHH-hccCCcEE
Q 015894           94 VPGFVKIVEVGPRDGLQNE-KNIVPAVVKVELIKLLVSSGLAVVEATSFVSPK-WVPQ-LADAKDVMAAIQ-NVEGARFP  169 (398)
Q Consensus        94 ~p~~I~i~D~TLRDG~Q~~-~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~-~~p~-~~D~~~v~~~i~-~~~~~~l~  169 (398)
                      |.++|+|+|||||||+|++ +.+|++++++.|++.|+++|++.||+|..+.-+ .+|. -+|+|+.++.++ .+|+++++
T Consensus         1 m~k~v~i~DtTLRDG~Qs~~~tr~~~~d~l~ia~~ld~~G~~siE~~GGatf~~~~~~~~e~p~e~lr~l~~~~~~~~lq   80 (593)
T PRK14040          1 MSKPLAITDVVLRDAHQSLFATRLRLDDMLPIAAKLDKVGYWSLESWGGATFDACIRFLGEDPWERLRELKKAMPNTPQQ   80 (593)
T ss_pred             CCCccEEEECCcccccccccccccCHHHHHHHHHHHHHcCCCEEEecCCcchhhhccccCCCHHHHHHHHHHhCCCCeEE
Confidence            4668999999999999999 679999999999999999999999996322110 0121 258899999888 57899999


Q ss_pred             EEeC--CH------------hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEee
Q 015894          170 VLTP--NL------------KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSC  235 (398)
Q Consensus       170 ~l~~--n~------------~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~  235 (398)
                      +|+|  |.            .+++.++++|++.||+|+++||.              +++...+++||++|..+++++++
T Consensus        81 ml~Rg~n~vg~~~ypddvv~~~v~~a~~~Gid~~rifd~lnd~--------------~~~~~ai~~ak~~G~~~~~~i~y  146 (593)
T PRK14040         81 MLLRGQNLLGYRHYADDVVERFVERAVKNGMDVFRVFDAMNDP--------------RNLETALKAVRKVGAHAQGTLSY  146 (593)
T ss_pred             EEecCcceeccccCcHHHHHHHHHHHHhcCCCEEEEeeeCCcH--------------HHHHHHHHHHHHcCCeEEEEEEE
Confidence            9987  21            24789999999999999999884              56788899999999999999998


Q ss_pred             eecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHH
Q 015894          236 VVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQ  315 (398)
Q Consensus       236 ~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~  315 (398)
                      ++ +|   .++++++.++++++.++|+++|+|+||+|.++|.+++++|+++++.+. ++|++|+|||.|||+||+++|++
T Consensus       147 t~-~p---~~~~~~~~~~a~~l~~~Gad~i~i~Dt~G~l~P~~~~~lv~~lk~~~~-~pi~~H~Hnt~GlA~An~laAie  221 (593)
T PRK14040        147 TT-SP---VHTLQTWVDLAKQLEDMGVDSLCIKDMAGLLKPYAAYELVSRIKKRVD-VPLHLHCHATTGLSTATLLKAIE  221 (593)
T ss_pred             ee-CC---ccCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhcC-CeEEEEECCCCchHHHHHHHHHH
Confidence            65 33   457999999999999999999999999999999999999999999984 78999999999999999999999


Q ss_pred             hCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHh
Q 015894          316 MGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHL  375 (398)
Q Consensus       316 aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~  375 (398)
                      +||++||+|++|||+      |+||++||+++.+|+..|+++++|+.+|.++++++.++.
T Consensus       222 AGa~~vD~ai~glG~------~~Gn~~le~vv~~L~~~~~~~gidl~~l~~is~~~~~v~  275 (593)
T PRK14040        222 AGIDGVDTAISSMSM------TYGHSATETLVATLEGTERDTGLDILKLEEIAAYFREVR  275 (593)
T ss_pred             cCCCEEEeccccccc------cccchhHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHH
Confidence            999999999999999      999999999999999999999999999999999999875

>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit

Probab=100.00  E-value=3.7e-48  Score=409.56  Aligned_cols=250  Identities=20%  Similarity=0.281  Sum_probs=225.7

Q ss_pred             EEeCCCcccCCCCC-CCCCHHHHHHHHHHHHhcCCCEEEEec----CCCCCcccCCCCHHHHHHHHHh-ccCCcEEEEeC
Q 015894          100 IVEVGPRDGLQNEK-NIVPAVVKVELIKLLVSSGLAVVEATS----FVSPKWVPQLADAKDVMAAIQN-VEGARFPVLTP  173 (398)
Q Consensus       100 i~D~TLRDG~Q~~~-~~~~~~~k~~ia~~L~~aGv~~IEvG~----~~~~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~~  173 (398)
                      |+|||||||+|+++ .+|++++|++|++.|+++|++.||+|.    .+.-.++  ..|++++++.+++ .+++++++|+|
T Consensus         1 I~DtTlRDG~Qs~~~~~~~t~dkl~ia~~L~~~Gv~~IE~~GGatfd~~~~f~--~e~~~e~l~~l~~~~~~~~l~~L~R   78 (582)
T TIGR01108         1 ITDVVLRDAHQSLFATRMRTEDMLPIAEKLDDVGYWSLEVWGGATFDACIRFL--NEDPWERLRELKKALPNTPLQMLLR   78 (582)
T ss_pred             CccCCCCccccccCCccCCHHHHHHHHHHHHHcCCCEEEecCCcccccccccC--CCCHHHHHHHHHHhCCCCEEEEEEc
Confidence            58999999999984 689999999999999999999999982    2221222  2578999999985 78999999976


Q ss_pred             --CHh------------hHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecC
Q 015894          174 --NLK------------GFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGC  239 (398)
Q Consensus       174 --n~~------------~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~  239 (398)
                        |..            ++++|+++|+|.|++|+++||.              +++...+++||++|+.+++++++++ +
T Consensus        79 g~N~~G~~~ypddvv~~~v~~a~~~Gvd~irif~~lnd~--------------~n~~~~i~~ak~~G~~v~~~i~~t~-~  143 (582)
T TIGR01108        79 GQNLLGYRHYADDVVERFVKKAVENGMDVFRIFDALNDP--------------RNLQAAIQAAKKHGAHAQGTISYTT-S  143 (582)
T ss_pred             cccccccccCchhhHHHHHHHHHHCCCCEEEEEEecCcH--------------HHHHHHHHHHHHcCCEEEEEEEecc-C
Confidence              433            3588999999999999999985              4577889999999999999999876 5


Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCC
Q 015894          240 PVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGIS  319 (398)
Q Consensus       240 ~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~  319 (398)
                      |   +++++++.++++++.++|+++|+||||+|.++|.++++++++++++++ ++|++|+|||.|||+||+++|+++||+
T Consensus       144 p---~~~~~~~~~~~~~~~~~Gad~I~i~Dt~G~~~P~~v~~lv~~lk~~~~-~pi~~H~Hnt~Gla~An~laAveaGa~  219 (582)
T TIGR01108       144 P---VHTLETYLDLAEELLEMGVDSICIKDMAGILTPKAAYELVSALKKRFG-LPVHLHSHATTGMAEMALLKAIEAGAD  219 (582)
T ss_pred             C---CCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHHhCC-CceEEEecCCCCcHHHHHHHHHHhCCC
Confidence            5   368999999999999999999999999999999999999999999998 789999999999999999999999999


Q ss_pred             EEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhC
Q 015894          320 TVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLG  376 (398)
Q Consensus       320 ~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g  376 (398)
                      +||+|++|||+      |+||++||+++.+|+.+|+++++|+++|.+++++++++..
T Consensus       220 ~vd~ai~GlG~------~tGn~~le~vv~~L~~~g~~tgid~~~L~~l~~~~~~v~~  270 (582)
T TIGR01108       220 GIDTAISSMSG------GTSHPPTETMVAALRGTGYDTGLDIELLLEIAAYFREVRK  270 (582)
T ss_pred             EEEeccccccc------cccChhHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHH
Confidence            99999999999      9999999999999999999999999999999999998753

This model describes the bacterial oxaloacetate decarboxylase alpha subunit and its equivalents in archaea. The oxaloacetate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases that present in bacteria and archaea. It a multi subunit enzyme consisting of a peripheral alpha-subunit and integral membrane subunits beta and gamma. The energy released by the decarboxylation reaction of oxaloacetate is coupled to Na+ ion pumping across the membrane.

>PRK12581 oxaloacetate decarboxylase; Provisional

Probab=100.00  E-value=2.3e-47  Score=391.73  Aligned_cols=261  Identities=18%  Similarity=0.221  Sum_probs=231.7

Q ss_pred             CCCccEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCC--cccCCCCHHHHHHHHH-hccCCcEE
Q 015894           94 VPGFVKIVEVGPRDGLQNE-KNIVPAVVKVELIKLLVSSGLAVVEATSFVSPK--WVPQLADAKDVMAAIQ-NVEGARFP  169 (398)
Q Consensus        94 ~p~~I~i~D~TLRDG~Q~~-~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~--~~p~~~D~~~v~~~i~-~~~~~~l~  169 (398)
                      |.++|+|+|||||||+|+. ..++++++.+.|++.|+++|++.||+|..+.-+  ..-..+|+|+.++.++ .+|+++++
T Consensus         9 ~~~~v~i~DtTlRDg~QSl~atr~~t~d~l~ia~~ld~~G~~siE~wGGAtfd~~~rfl~edpwerlr~~r~~~~nt~lq   88 (468)
T PRK12581          9 MQQQVAITETVLRDGHQSLMATRLSIEDMLPVLTILDKIGYYSLECWGGATFDACIRFLNEDPWERLRTLKKGLPNTRLQ   88 (468)
T ss_pred             cCCceEEEECCccchhhhccccCCCHHHHHHHHHHHHhcCCCEEEecCCcchhhhhcccCCCHHHHHHHHHHhCCCCcee
Confidence            5567999999999999995 567999999999999999999999997433211  0012368999999998 68999999


Q ss_pred             EEeC--CH-------hh-----HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEee
Q 015894          170 VLTP--NL-------KG-----FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSC  235 (398)
Q Consensus       170 ~l~~--n~-------~~-----ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~  235 (398)
                      +|.|  |.       ++     ++.|++.|+|.+|+|++.+|.              ++++..++.+|+.|..+++.+++
T Consensus        89 mLlRG~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rifd~lnd~--------------~n~~~ai~~ak~~G~~~~~~i~y  154 (468)
T PRK12581         89 MLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRIFDALNDP--------------RNIQQALRAVKKTGKEAQLCIAY  154 (468)
T ss_pred             eeeccccccCccCCcchHHHHHHHHHHHCCCCEEEEcccCCCH--------------HHHHHHHHHHHHcCCEEEEEEEE
Confidence            9987  32       24     678999999999999999875              66788899999999999999998


Q ss_pred             eecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHH
Q 015894          236 VVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQ  315 (398)
Q Consensus       236 ~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~  315 (398)
                      +. +|   .++.+|+.++++++.++|+++|+|+||+|.++|.+++++|+++++ .++++|++|+|||.|||+||+++|++
T Consensus       155 t~-sp---~~t~~y~~~~a~~l~~~Gad~I~IkDtaG~l~P~~v~~Lv~alk~-~~~~pi~~H~Hnt~GlA~An~laAie  229 (468)
T PRK12581        155 TT-SP---VHTLNYYLSLVKELVEMGADSICIKDMAGILTPKAAKELVSGIKA-MTNLPLIVHTHATSGISQMTYLAAVE  229 (468)
T ss_pred             Ee-CC---cCcHHHHHHHHHHHHHcCCCEEEECCCCCCcCHHHHHHHHHHHHh-ccCCeEEEEeCCCCccHHHHHHHHHH
Confidence            76 34   468999999999999999999999999999999999999999988 56789999999999999999999999


Q ss_pred             hCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCCCC
Q 015894          316 MGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTS  379 (398)
Q Consensus       316 aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~~~  379 (398)
                      +||++||+|++|+|+      ++||++||+++.+|+..|+++++|+++|.+++++++++...-.
T Consensus       230 AGad~vD~ai~g~g~------gagN~~tE~lv~~L~~~g~~tgiDl~~L~~~a~~~~~vr~~y~  287 (468)
T PRK12581        230 AGADRIDTALSPFSE------GTSQPATESMYLALKEAGYDITLDETLLEQAANHLRQARQKYL  287 (468)
T ss_pred             cCCCEEEeeccccCC------CcCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999      9999999999999999999999999999999999998764443

>PRK14042 pyruvate carboxylase subunit B; Provisional

Probab=100.00  E-value=4.4e-46  Score=392.99  Aligned_cols=252  Identities=18%  Similarity=0.241  Sum_probs=229.1

Q ss_pred             ccEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHHhcCCCEEEEecCCC----CCcccCCCCHHHHHHHHH-hccCCcEEE
Q 015894           97 FVKIVEVGPRDGLQNE-KNIVPAVVKVELIKLLVSSGLAVVEATSFVS----PKWVPQLADAKDVMAAIQ-NVEGARFPV  170 (398)
Q Consensus        97 ~I~i~D~TLRDG~Q~~-~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~----~~~~p~~~D~~~v~~~i~-~~~~~~l~~  170 (398)
                      +|.|+|+|||||+|+. ..++++++.+.|++.|+++|+..||+|..+.    -.+  ..+|+|+.++.++ .+|++++++
T Consensus         3 ~~~i~DttlRDg~QSl~atr~~t~d~~~ia~~~d~~g~~siE~~gGatfd~~~rf--l~edpwerl~~~r~~~pnt~lqm   80 (596)
T PRK14042          3 KTFITDVTLRDAHQCLIATRMRTEDMLPICNKMDDVGFWAMEVWGGATFDACLRF--LKEDPWSRLRQLRQALPNTQLSM   80 (596)
T ss_pred             ceEEEECCcchhhhhhhhcCCCHHHHHHHHHHHHhcCCCEEEeeCCcccceeecc--cCCCHHHHHHHHHHhCCCCceEE
Confidence            6999999999999966 6789999999999999999999999985432    222  2368999999998 689999999


Q ss_pred             EeC--CHh------------hHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeee
Q 015894          171 LTP--NLK------------GFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCV  236 (398)
Q Consensus       171 l~~--n~~------------~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~  236 (398)
                      |.|  |..            .++.++++|+|.+|+|++.+|.              ++++..++.+|+.|..+++.||++
T Consensus        81 L~Rg~N~vGy~~~~d~vv~~~v~~a~~~Gidv~Rifd~lnd~--------------~n~~~~i~~~k~~G~~~~~~i~yt  146 (596)
T PRK14042         81 LLRGQNLLGYRNYADDVVRAFVKLAVNNGVDVFRVFDALNDA--------------RNLKVAIDAIKSHKKHAQGAICYT  146 (596)
T ss_pred             EeccccccccccCChHHHHHHHHHHHHcCCCEEEEcccCcch--------------HHHHHHHHHHHHcCCEEEEEEEec
Confidence            986  432            3578899999999999999985              667788999999999999999986


Q ss_pred             ecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHh
Q 015894          237 VGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQM  316 (398)
Q Consensus       237 fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~a  316 (398)
                      . +|   .++++++.++++++.++|+++|+|+||+|.++|.++++++++++++++ ++|++|+|||.|||+||+++|+++
T Consensus       147 ~-sp---~~t~e~~~~~ak~l~~~Gad~I~IkDtaG~l~P~~v~~lv~alk~~~~-ipi~~H~Hnt~Gla~an~laAiea  221 (596)
T PRK14042        147 T-SP---VHTLDNFLELGKKLAEMGCDSIAIKDMAGLLTPTVTVELYAGLKQATG-LPVHLHSHSTSGLASICHYEAVLA  221 (596)
T ss_pred             C-CC---CCCHHHHHHHHHHHHHcCCCEEEeCCcccCCCHHHHHHHHHHHHhhcC-CEEEEEeCCCCCcHHHHHHHHHHh
Confidence            4 44   578999999999999999999999999999999999999999999986 799999999999999999999999


Q ss_pred             CCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHh
Q 015894          317 GISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHL  375 (398)
Q Consensus       317 Ga~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~  375 (398)
                      ||++||+|++|||+      ++||++||+++.+|+..|+++++|+++|.++++++.++.
T Consensus       222 Gad~iD~ai~glGg------~tGn~~tE~lv~~L~~~g~~tgidl~~l~~~~~~~~~vr  274 (596)
T PRK14042        222 GCNHIDTAISSFSG------GASHPPTEALVAALTDTPYDTELDLNILLEIDDYFKAVR  274 (596)
T ss_pred             CCCEEEeccccccC------CCCcHhHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHH
Confidence            99999999999999      999999999999999999999999999999999999875

>PRK12999 pyruvate carboxylase; Reviewed

Probab=100.00  E-value=2.4e-44  Score=404.57  Aligned_cols=262  Identities=18%  Similarity=0.168  Sum_probs=230.9

Q ss_pred             CccEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHHhc--CCCEEEEecCCCCC-cccC-CCCHHHHHHHHH-hccCCcEE
Q 015894           96 GFVKIVEVGPRDGLQNE-KNIVPAVVKVELIKLLVSS--GLAVVEATSFVSPK-WVPQ-LADAKDVMAAIQ-NVEGARFP  169 (398)
Q Consensus        96 ~~I~i~D~TLRDG~Q~~-~~~~~~~~k~~ia~~L~~a--Gv~~IEvG~~~~~~-~~p~-~~D~~~v~~~i~-~~~~~~l~  169 (398)
                      ++|.|+|||||||+|++ +.+|++++++.|++.|+++  |++.||+|..+.-+ .++. -+|+|+.++.++ .+|+++++
T Consensus       531 ~~v~i~DtTlRDg~Qs~~atr~~~~d~l~ia~~l~~~~~g~~siE~~ggatfd~~~r~l~e~p~erl~~~r~~~~~~~~q  610 (1146)
T PRK12999        531 KRVLLTDTTFRDAHQSLLATRVRTKDLLRIAPATARLLPNLFSLEMWGGATFDVAYRFLKEDPWERLAELREAAPNVLFQ  610 (1146)
T ss_pred             CCcEEEECCcchhhhccccccCCHHHHHHHHHHHHHHhCCCCEEEeeCCcchhhhccccCCCHHHHHHHHHHhCCCCeEE
Confidence            46999999999999998 6899999999999999999  99999999743210 0111 268999999998 57999999


Q ss_pred             EEeCC-------------Hhh-HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEee
Q 015894          170 VLTPN-------------LKG-FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSC  235 (398)
Q Consensus       170 ~l~~n-------------~~~-ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~  235 (398)
                      +|+|.             .++ ++.++++|++.||+|++.||+              ++++..++.+|+.|..+++.+++
T Consensus       611 ~l~Rg~n~vgy~~yp~~v~~~~i~~a~~~Gid~~rifd~lnd~--------------~~~~~~i~~vk~~g~~~~~~i~y  676 (1146)
T PRK12999        611 MLLRGSNAVGYTNYPDNVVRAFVREAAAAGIDVFRIFDSLNWV--------------ENMRVAIDAVRETGKIAEAAICY  676 (1146)
T ss_pred             EEecccccccccCCCchHHHHHHHHHHHcCCCEEEEeccCChH--------------HHHHHHHHHHHHcCCeEEEEEEE
Confidence            99973             123 789999999999999998874              55778899999999988888887


Q ss_pred             eecCCCCC--CCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHH
Q 015894          236 VVGCPVEG--MVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILAS  313 (398)
Q Consensus       236 ~fg~~~~~--r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaA  313 (398)
                      +-.-.|.+  .++++++.++++++.++|+++|+|+||+|+++|.+++++|+++|+++ +++|++|+|||.|||+||+++|
T Consensus       677 tg~~~d~~~~~~~~~~~~~~a~~l~~~Ga~~i~ikDt~G~l~P~~~~~lv~~lk~~~-~ipi~~H~Hnt~Gla~an~laA  755 (1146)
T PRK12999        677 TGDILDPARAKYDLDYYVDLAKELEKAGAHILAIKDMAGLLKPAAAYELVSALKEEV-DLPIHLHTHDTSGNGLATYLAA  755 (1146)
T ss_pred             EecCCCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCccCCCCHHHHHHHHHHHHHHc-CCeEEEEeCCCCchHHHHHHHH
Confidence            51112333  37999999999999999999999999999999999999999999998 4799999999999999999999


Q ss_pred             HHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCCC
Q 015894          314 LQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRT  378 (398)
Q Consensus       314 l~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~~  378 (398)
                      +++||++||+|++|||+      ++||++||+++++|+..|+++++|+++|.+++++++++...-
T Consensus       756 ~~aGad~vD~av~glg~------~tgn~~le~vv~~L~~~~~~t~idl~~l~~~s~~~~~~r~~y  814 (1146)
T PRK12999        756 AEAGVDIVDVAVASMSG------LTSQPSLNSIVAALEGTERDTGLDLDAIRKLSPYWEAVRPYY  814 (1146)
T ss_pred             HHhCCCEEEecchhhcC------CcCCHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHhHh
Confidence            99999999999999999      999999999999999999999999999999999999877444

>TIGR02146 LysS_fung_arch homocitrate synthase

Probab=100.00  E-value=7.1e-42  Score=340.54  Aligned_cols=280  Identities=19%  Similarity=0.225  Sum_probs=251.5

Q ss_pred             EEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCC-HhhH
Q 015894          100 IVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPN-LKGF  178 (398)
Q Consensus       100 i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n-~~~i  178 (398)
                      |+|||||||.|..++.|++++|+++++.|.++|++.||+|++..   .|++.+..+++...+  ....+.+++++ ..++
T Consensus         1 i~D~TlRDG~q~~~~~~~~~~ki~i~~~l~~~Gv~~iE~g~p~~---~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~   75 (344)
T TIGR02146         1 IIDSTLREGEQFPGANFSTEQKIEIAKALDEFGIDYIEVTHPAA---SKQSRIDIEIIASLG--LKANIVTHIRCRLDDA   75 (344)
T ss_pred             CCCCCCCccCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCC---CHHHHHHHHHHHhcC--CCcEEEEECCCCHHHH
Confidence            57999999999999999999999999999999999999999653   333333333333322  23457778886 7899


Q ss_pred             HHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHH
Q 015894          179 EAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLY  258 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~  258 (398)
                      +.+.++|++.+.++.+.|+.+...+++++.++....+...++.|++.|+.+..+++.      ..+.+++++.++++.+.
T Consensus        76 ~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~~~e~a~~~g~~~~~~~~~------~~~~~~~~~~~~~d~~~  149 (344)
T TIGR02146        76 KVAVELGVDGIDIFFGTSKLLRIAEHRSDAKSILESARETIEYAKSAGLEVRFSAED------TFRSELADLLSIYETVG  149 (344)
T ss_pred             HHHHHCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEee------CCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999998866664      45788999999999999


Q ss_pred             hCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCC
Q 015894          259 DMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGAS  338 (398)
Q Consensus       259 ~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~gra  338 (398)
                      ++|++.|+++||.|.++|.+++.+++.+++..|.+++++|+|||.|+|++|+++|+.+||+++|+|++|||+      ++
T Consensus       150 ~~g~~~i~~~dt~g~~~p~~v~~~v~~~~d~~~~~~~~~H~Hn~~g~avant~~al~~ga~~~d~s~~glG~------~~  223 (344)
T TIGR02146       150 VFGVDRVGIADTVGKAAPRQVYELIRTVVRVVPGVDIELHAHNDTGCAVANAYNAIEGGATIVDTTVLGIGE------RN  223 (344)
T ss_pred             HCCCCEEEEcCCCCcCCHHHHHHHHHHHHHhCCCCeEEEEecCCCCHHHHHHHHHHHcCCCEEEEEeeeeeC------CC
Confidence            999999999999999999999999999999888889999999999999999999999999999999999999      88


Q ss_pred             CCccHHHHHHHHHh-CCCCCccChHHHHHHHHHHHHHhCCCCCCCcccccccccccccCCC
Q 015894          339 GNVATEDVVYMLNG-LGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANASKL  398 (398)
Q Consensus       339 GNa~lE~vv~~L~~-~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~f~~~~s~~  398 (398)
                      ||++++.++..|.. .|+. .+|+..+.++++.+....++++++++|++|.++|+ |+||+
T Consensus       224 G~~~l~~~~~~L~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~G~~~~~-~~~g~  282 (344)
T TIGR02146       224 GITPLGGILARLYYHTPMY-VYKLGKLIELTRMVAGEVGVTIPFNNPITGELAFT-HKAGI  282 (344)
T ss_pred             CCccHHHHHHHHHHhcCCC-ccCHHHHHHHHHHHHHHhCCCCCCCCCeeCcchhh-cccch
Confidence            99999999998886 4664 48999999999999999999999999999999999 99985

This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.

>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion]

Probab=100.00  E-value=5.1e-43  Score=345.91  Aligned_cols=253  Identities=23%  Similarity=0.334  Sum_probs=230.0

Q ss_pred             CccEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHHhcCCCEEEEecCCC----CCcccCCCCHHHHHHHHH-hccCCcEE
Q 015894           96 GFVKIVEVGPRDGLQNE-KNIVPAVVKVELIKLLVSSGLAVVEATSFVS----PKWVPQLADAKDVMAAIQ-NVEGARFP  169 (398)
Q Consensus        96 ~~I~i~D~TLRDG~Q~~-~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~----~~~~p~~~D~~~v~~~i~-~~~~~~l~  169 (398)
                      ++|+|+|++||||+|+. ..++.+++.+.|++.|++.|+.++|+|..+.    -++.  .+|+|+.++.+| .+++++++
T Consensus         4 k~i~itdt~lRDghQSl~ATRmrt~DmlPi~e~lD~~G~~slE~WGGATFDaciRfL--nEDPWeRLr~lk~~~~nT~LQ   81 (472)
T COG5016           4 KKIKITDTVLRDGHQSLLATRMRTEDMLPIAEALDKVGYWSLEVWGGATFDACIRFL--NEDPWERLRELKKAVPNTKLQ   81 (472)
T ss_pred             ceeeeEeeeechHHHHHHHHHHhHHhhHHHHHHHHhcCeeEEEecCCccHHHHHHHh--cCCHHHHHHHHHHhCCCcHHH
Confidence            47999999999999998 5689999999999999999999999985432    2222  279999999999 58999999


Q ss_pred             EEeC--CHhh------------HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEee
Q 015894          170 VLTP--NLKG------------FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSC  235 (398)
Q Consensus       170 ~l~~--n~~~------------ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~  235 (398)
                      +|.|  |+.|            ++++++.|+|.+|+|+.+||+              ++++.+++.+|++|..+++.+|+
T Consensus        82 MLlRGQNlvGYrhyaDDvVe~Fv~ka~~nGidvfRiFDAlND~--------------RNl~~ai~a~kk~G~h~q~~i~Y  147 (472)
T COG5016          82 MLLRGQNLVGYRHYADDVVEKFVEKAAENGIDVFRIFDALNDV--------------RNLKTAIKAAKKHGAHVQGTISY  147 (472)
T ss_pred             HHHccCccccccCCchHHHHHHHHHHHhcCCcEEEechhccch--------------hHHHHHHHHHHhcCceeEEEEEe
Confidence            9986  5433            468899999999999999996              56778899999999999999998


Q ss_pred             eecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHH
Q 015894          236 VVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQ  315 (398)
Q Consensus       236 ~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~  315 (398)
                      .. +|.+   +.+++.++++++.++|+|.|||+|++|+++|...+++|+++++.+| ++|.+|+|.|-|||.++.++|++
T Consensus       148 T~-sPvH---t~e~yv~~akel~~~g~DSIciKDmaGlltP~~ayelVk~iK~~~~-~pv~lHtH~TsG~a~m~ylkAvE  222 (472)
T COG5016         148 TT-SPVH---TLEYYVELAKELLEMGVDSICIKDMAGLLTPYEAYELVKAIKKELP-VPVELHTHATSGMAEMTYLKAVE  222 (472)
T ss_pred             cc-CCcc---cHHHHHHHHHHHHHcCCCEEEeecccccCChHHHHHHHHHHHHhcC-CeeEEecccccchHHHHHHHHHH
Confidence            75 5654   7899999999999999999999999999999999999999999999 69999999999999999999999


Q ss_pred             hCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHh
Q 015894          316 MGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHL  375 (398)
Q Consensus       316 aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~  375 (398)
                      ||||+||+++..|.+      +++++++|.++.+|+..++++|+|++.|.++++++.++.
T Consensus       223 AGvD~iDTAisp~S~------gtsqP~tEtmv~aL~gt~yDtgld~~~l~~~~~yf~~vr  276 (472)
T COG5016         223 AGVDGIDTAISPLSG------GTSQPATETMVAALRGTGYDTGLDLELLEEIAEYFREVR  276 (472)
T ss_pred             hCcchhhhhhccccC------CCCCCcHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHH
Confidence            999999999999999      999999999999999999999999999999999988654

>TIGR01235 pyruv_carbox pyruvate carboxylase

Probab=100.00  E-value=1.8e-41  Score=380.28  Aligned_cols=258  Identities=17%  Similarity=0.178  Sum_probs=230.3

Q ss_pred             CccEEEeCCCcccCCCCC-CCCCHHHHHHHHHHHHhc--CCCEEEEecCC----CCCcccCCCCHHHHHHHHH-hccCCc
Q 015894           96 GFVKIVEVGPRDGLQNEK-NIVPAVVKVELIKLLVSS--GLAVVEATSFV----SPKWVPQLADAKDVMAAIQ-NVEGAR  167 (398)
Q Consensus        96 ~~I~i~D~TLRDG~Q~~~-~~~~~~~k~~ia~~L~~a--Gv~~IEvG~~~----~~~~~p~~~D~~~v~~~i~-~~~~~~  167 (398)
                      ++|.|+|+|||||+|+.- .++.+++.+.|++.++++  |+..+|+|..+    +-++.  .+|+|+.++.+| .+|++.
T Consensus       529 ~~~~~tdtt~RD~hQSl~atr~rt~d~~~ia~~~~~~~~g~~s~E~wggAtfd~~~rfl--~EdPwerl~~~r~~~pn~~  606 (1143)
T TIGR01235       529 KRVLLTDTTFRDAHQSLLATRVRTHDLAKIAPTTSHALPNLFSLECWGGATFDVAMRFL--HEDPWERLEDLRKGVPNIL  606 (1143)
T ss_pred             CCeeEEECcccchhhhhhhhCCCHHHHHHHHHHHHHhcCCceEEEeeCCccHHHHHHHh--cCCHHHHHHHHHHhCCCCc
Confidence            469999999999999995 689999999999999995  99999998543    22222  279999999998 689999


Q ss_pred             EEEEeC--CHhh------------HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 015894          168 FPVLTP--NLKG------------FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYL  233 (398)
Q Consensus       168 l~~l~~--n~~~------------ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l  233 (398)
                      ++||.|  |..+            ++.++++|+|.+|+|+++||+              ++++..++.+|+.|..++++|
T Consensus       607 ~qml~Rg~n~vgy~~ypd~vv~~f~~~~~~~GidifrifD~lN~~--------------~n~~~~~~~~~~~g~~~~~~i  672 (1143)
T TIGR01235       607 FQMLLRGANGVGYTNYPDNVVKYFVKQAAQGGIDIFRVFDSLNWV--------------ENMRVGMDAVAEAGKVVEAAI  672 (1143)
T ss_pred             eeeeeccccccCccCCCHHHHHHHHHHHHHcCCCEEEECccCcCH--------------HHHHHHHHHHHHcCCEEEEEE
Confidence            999997  4332            467889999999999999985              778889999999999999999


Q ss_pred             eeeecC--CCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHH
Q 015894          234 SCVVGC--PVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNIL  311 (398)
Q Consensus       234 ~~~fg~--~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANal  311 (398)
                      |++-.-  |....++++|+.++++++.++|+++|+|+||+|+++|.+++++|+++++++ +++|++|+|||.|+|+||++
T Consensus       673 ~yt~~~~d~~~~~~~l~y~~~~ak~l~~~Gad~I~ikDt~Gll~P~~~~~Lv~~lk~~~-~~pi~~H~Hdt~Gla~an~l  751 (1143)
T TIGR01235       673 CYTGDILDPARPKYDLKYYTNLAVELEKAGAHILGIKDMAGLLKPAAAKLLIKALREKT-DLPIHFHTHDTSGIAVASML  751 (1143)
T ss_pred             EEeccCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCCcHHHHHH
Confidence            986311  222246899999999999999999999999999999999999999999998 57999999999999999999


Q ss_pred             HHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhC
Q 015894          312 ASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLG  376 (398)
Q Consensus       312 aAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g  376 (398)
                      +|+++||++||+|++|||+      +++++++|.++.+|+..|+++++|+++|.+++++++++..
T Consensus       752 aA~eaGad~vD~ai~gl~G------~ts~p~~e~~v~~L~~~~~~tgidl~~l~~is~~~~~vr~  810 (1143)
T TIGR01235       752 AAVEAGVDVVDVAVDSMSG------LTSQPSLGAIVAALEGSERDPGLNVAWIRELSAYWEAVRN  810 (1143)
T ss_pred             HHHHhCCCEEEecchhhcC------CCCCHhHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999      9999999999999999999999999999999999998643

This enzyme plays a role in gluconeogensis but not glycolysis.

>COG1038 PycA Pyruvate carboxylase [Energy production and conversion]

Probab=99.97  E-value=4.9e-31  Score=276.56  Aligned_cols=257  Identities=19%  Similarity=0.211  Sum_probs=225.3

Q ss_pred             CccEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHHhc--CCCEEEEec----CCCCCcccCCCCHHHHHHHHH-hccCCc
Q 015894           96 GFVKIVEVGPRDGLQNE-KNIVPAVVKVELIKLLVSS--GLAVVEATS----FVSPKWVPQLADAKDVMAAIQ-NVEGAR  167 (398)
Q Consensus        96 ~~I~i~D~TLRDG~Q~~-~~~~~~~~k~~ia~~L~~a--Gv~~IEvG~----~~~~~~~p~~~D~~~v~~~i~-~~~~~~  167 (398)
                      +.+.++|+|+||++|+. ..++.+.+..+|++...++  ....+|+|-    .++.+++  .+|+|+.++.+| .+||+.
T Consensus       534 ~~vlltDTT~RDaHQSLLATRvRt~dl~~IA~~~a~~lp~lfSlE~WGGATfDVamRFL--~EdPWeRL~~lRk~~PNvl  611 (1149)
T COG1038         534 KAVLLTDTTFRDAHQSLLATRVRTHDLARIAPATARALPQLFSLEMWGGATFDVAMRFL--KEDPWERLERLRKAVPNVL  611 (1149)
T ss_pred             cceeeeecchhhHHHHHHHHHHhhhhhhhhhHHHHHhhhhhhchhhhCCchHHHHHHHh--ccCHHHHHHHHHHhCCchH
Confidence            46999999999999998 3578888889999999776  678899974    3444443  279999999998 589999


Q ss_pred             EEEEeC--CHhh------------HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEE
Q 015894          168 FPVLTP--NLKG------------FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYL  233 (398)
Q Consensus       168 l~~l~~--n~~~------------ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l  233 (398)
                      ++||.|  |-.+            ++.|...|+|.+|||+++|.+              +.++-.++.+++.|..+++++
T Consensus       612 fQMLLRgaN~VgY~nyPDnVi~~Fvkqaa~~GIDvFRiFDsLNwv--------------~~M~vaidAV~e~gkv~Eati  677 (1149)
T COG1038         612 FQMLLRGANGVGYKNYPDNVIREFVKQAAKSGIDVFRIFDSLNWV--------------EQMRVAIDAVREAGKVAEATI  677 (1149)
T ss_pred             HHHHhccccccCcCCCchHHHHHHHHHHHhcCccEEEeehhhcch--------------hhhhhHHHHHHhcCCeEEEEE
Confidence            999976  3222            478889999999999998764              667788899999999999999


Q ss_pred             eeeecC--CCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHH
Q 015894          234 SCVVGC--PVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNIL  311 (398)
Q Consensus       234 ~~~fg~--~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANal  311 (398)
                      |++-.-  |....++.+||.++++++.++|++++.|+|++|++.|...+.||++||+.+ ++||++|+||+.|.++|..+
T Consensus       678 CYTGDildp~r~kY~L~YY~~lA~el~~~GaHIlaIKDMAGLLKP~AA~~Li~aLr~~~-dlPIHlHTHDTsG~~~at~~  756 (1149)
T COG1038         678 CYTGDILDPGRKKYTLDYYVKLAKELEKAGAHILAIKDMAGLLKPAAAYRLISALRETV-DLPIHLHTHDTSGNGVATYL  756 (1149)
T ss_pred             EeccccCCCCcccccHHHHHHHHHHHHhcCCcEEEehhhhhccCHHHHHHHHHHHHHhc-CCceEEeccCCCccHHHHHH
Confidence            985322  323357999999999999999999999999999999999999999999998 67999999999999999999


Q ss_pred             HHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHh
Q 015894          312 ASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHL  375 (398)
Q Consensus       312 aAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~  375 (398)
                      +|++||+|+||+++..|.+      -+.++++-.++.+|.....++++|.+.+.+++.|++.+-
T Consensus       757 aA~~AGvDivD~A~~smsG------~TSQPsl~si~~al~~~~r~~~ld~~~~~~i~~YWe~vR  814 (1149)
T COG1038         757 AAVEAGVDIVDVAMASMSG------LTSQPSLNSIVAALAGTERDTGLDIEAVRELSFYWEAVR  814 (1149)
T ss_pred             HHHHcCCchhhhhhhhccC------CCCCccHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            9999999999999999999      999999999999999988889999999999999999765

>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion]

Probab=99.95  E-value=2.9e-28  Score=251.74  Aligned_cols=264  Identities=18%  Similarity=0.173  Sum_probs=225.9

Q ss_pred             CCCCccEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHH--hcCCCEEEEec----CCCCCcccCCCCHHHHHHHHH-hcc
Q 015894           93 RVPGFVKIVEVGPRDGLQNE-KNIVPAVVKVELIKLLV--SSGLAVVEATS----FVSPKWVPQLADAKDVMAAIQ-NVE  164 (398)
Q Consensus        93 ~~p~~I~i~D~TLRDG~Q~~-~~~~~~~~k~~ia~~L~--~aGv~~IEvG~----~~~~~~~p~~~D~~~v~~~i~-~~~  164 (398)
                      +.| ...|+|+|+||..|+. ..++.+.+-..|++.-.  -+|...+|.|.    .++.++.  .+++|+.++.+| .+|
T Consensus       556 n~~-g~llmDTT~RDAHQSLLATRVRthDl~~IaPyvah~f~~lfslE~WGGATFDVamRFL--hEcPWeRL~~lRkliP  632 (1176)
T KOG0369|consen  556 NHP-GLLLMDTTFRDAHQSLLATRVRTHDLAKIAPYVAHAFAGLFSLENWGGATFDVAMRFL--HECPWERLRELRKLIP  632 (1176)
T ss_pred             cCC-CceEeechhHHHHHHHHHHHhhhhhhhhcchHHHHHhhhhhhhhhcCCchhhHHHHHH--hcChHHHHHHHHHhCC
Confidence            345 4889999999999998 34677788888888764  45899999974    3344433  268999999998 579


Q ss_pred             CCcEEEEeC--CHh------h------HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEE
Q 015894          165 GARFPVLTP--NLK------G------FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVR  230 (398)
Q Consensus       165 ~~~l~~l~~--n~~------~------ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~  230 (398)
                      ++.+++|.|  |..      |      .+.|.+.|+|.+|+|+++++.              .++.--++.+++.|..|+
T Consensus       633 NIPFQmLLRGANavgYssyPDNviykFce~Ak~nGmDiFRVFDsLN~l--------------pnl~lGmeAagkAGGVVE  698 (1176)
T KOG0369|consen  633 NIPFQMLLRGANAVGYSSYPDNVIYKFCEQAKKNGMDIFRVFDSLNYL--------------PNLLLGMEAAGKAGGVVE  698 (1176)
T ss_pred             CCcHHHHhcccccccccCCChhHHHHHHHHHHhcCcceeeehhhhhhh--------------hhhhhhHhhhhccCCeEE
Confidence            999999876  221      2      378999999999999998763              556667889999999999


Q ss_pred             EEEeeeecC--CCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHH
Q 015894          231 GYLSCVVGC--PVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALS  308 (398)
Q Consensus       231 ~~l~~~fg~--~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~A  308 (398)
                      +.+|++-..  |.-+.++.+||..++++++.+|.++++|+|++|++.|...+-+|.++|+.+|++||++|.||+-|-|+|
T Consensus       699 Aai~YtGDv~dp~rtKY~L~YY~nlad~lV~agtHiL~IKDMAG~lKP~aa~lLi~alRdk~PdlPiHvHtHDtsGagVA  778 (1176)
T KOG0369|consen  699 AAICYTGDVLDPSRTKYNLDYYLNLADKLVKAGTHILGIKDMAGVLKPEAAKLLIGALRDKFPDLPIHVHTHDTSGAGVA  778 (1176)
T ss_pred             EEEeeccccCCcccccccHHHHHHHHHHHHhccCeEEeehhhhcccCHHHHHHHHHHHHhhCCCCceEEeccCCccHHHH
Confidence            999986322  323458999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCCCC
Q 015894          309 NILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTS  379 (398)
Q Consensus       309 NalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~~~  379 (398)
                      ..+++..||||.||+++..|.+      -+.++++..+++.|+..-++|+++++.+.+.+.|+++.-..--
T Consensus       779 sMlaca~AGADVVDvA~dSMSG------mTSQPSmgA~vAsl~Gt~~Dt~l~~~~v~eysaYWe~~R~LYa  843 (1176)
T KOG0369|consen  779 SMLACALAGADVVDVAVDSMSG------MTSQPSMGALVASLQGTPLDTGLNLEHVREYSAYWEQMRLLYA  843 (1176)
T ss_pred             HHHHHHHcCCceeeeecccccc------cccCCchhhhhhhccCCcccCCCchHHHHHHHHHHHHHhhhhc
Confidence            9999999999999999999999      9999999999999998888999999999999999998764433

>TIGR02146 LysS_fung_arch homocitrate synthase

Probab=98.56  E-value=1.8e-14  Score=143.69  Aligned_cols=140  Identities=14%  Similarity=0.020  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHhCCCC-EEEEccCcCcCCHHHHHHHHHHHHhhC--------------C-CCeEEEEeCCccchHHHHHHH
Q 015894          249 KVAYVSKQLYDMGCS-EISLGDTIGVGTPGTVIPMLEAVLDAV--------------P-VDKLAVHFHDTYGQALSNILA  312 (398)
Q Consensus       249 ~l~~~a~~l~~~Gad-~I~L~DT~G~~~P~~v~~lv~~l~~~~--------------p-~~~l~~H~Hnd~GlA~ANala  312 (398)
                      .+...++.+.+.|.+ .+.+.|+. ...|..+.+++..+...-              | .+...+|+||+.|++++|++.
T Consensus       111 ~v~~~~e~a~~~g~~~~~~~~~~~-~~~~~~~~~~~d~~~~~g~~~i~~~dt~g~~~p~~v~~~v~~~~d~~~~~~~~~H  189 (344)
T TIGR02146       111 SARETIEYAKSAGLEVRFSAEDTF-RSELADLLSIYETVGVFGVDRVGIADTVGKAAPRQVYELIRTVVRVVPGVDIELH  189 (344)
T ss_pred             HHHHHHHHHHHCCCeEEEEEeeCC-CCCHHHHHHHHHHHHHCCCCEEEEcCCCCcCCHHHHHHHHHHHHHhCCCCeEEEE
Confidence            334455555667765 57778875 456777877777776432              2 245788999999999999999


Q ss_pred             HHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHh-CCC-CCccChHHHHHHHHHHHHHhCCCCCCCcccccccc
Q 015894          313 SLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNG-LGV-RTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKT  390 (398)
Q Consensus       313 Al~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~-~Gi-~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~  390 (398)
                      +...|...+..|++|+|+      |+||++++  +..|.+ .|. ++.+++..|.....++..-++..++.++|++|.+.
T Consensus       190 ~Hn~~g~avant~~al~~------ga~~~d~s--~~glG~~~G~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~v~~~~~  261 (344)
T TIGR02146       190 AHNDTGCAVANAYNAIEG------GATIVDTT--VLGIGERNGITPLGGILARLYYHTPMYVYKLGKLIELTRMVAGEVG  261 (344)
T ss_pred             ecCCCCHHHHHHHHHHHc------CCCEEEEE--eeeeeCCCCCccHHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHhC
Confidence            999999999999999999      99999996  333332 343 23455666666665555556778899999999999


Q ss_pred             cccccCCC
Q 015894          391 STANASKL  398 (398)
Q Consensus       391 f~~~~s~~  398 (398)
                      |+ |+|++
T Consensus       262 ~~-~~~~~  268 (344)
T TIGR02146       262 VT-IPFNN  268 (344)
T ss_pred             CC-CCCCC
Confidence            99 99875

This model includes the yeast LYS21 gene which carries out the first step of the alpha-aminoadipate (AAA) lysine biosynthesis pathway. A related pathway is found in Thermus thermophilus. This enzyme is closely related to 2-isopropylmalate synthase (LeuA) and citramalate synthase (CimA), both of which are present in the euryarchaeota. Some archaea have a separate homocitrate synthase (AksA) which also synthesizes longer homocitrate analogs.

>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated

Probab=98.32  E-value=1.9e-05  Score=81.83  Aligned_cols=170  Identities=21%  Similarity=0.204  Sum_probs=110.7

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCC----HhhHHHHHHcCCCEEE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPN----LKGFEAAVAAGAKEVA  190 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n----~~~ie~a~~~Gv~~v~  190 (398)
                      ..+.++++++++.+.+.|++.||+|++...     ....+.+.+..+..+...+...++.    ..+++.+.++|++.|+
T Consensus        12 ~~~~~~~~~~~~~~~~~Gv~~ie~g~p~~~-----~~~~~~i~~l~~~~~~~~ii~D~kl~d~g~~~v~~a~~aGAdgV~   86 (430)
T PRK07028         12 LLELDRAVEIAKEAVAGGADWIEAGTPLIK-----SEGMNAIRTLRKNFPDHTIVADMKTMDTGAIEVEMAAKAGADIVC   86 (430)
T ss_pred             cCCHHHHHHHHHHHHhcCCcEEEeCCHHHH-----HhhHHHHHHHHHHCCCCEEEEEeeeccchHHHHHHHHHcCCCEEE
Confidence            578899999999999999999999853210     0122333333333333333333322    3488999999999999


Q ss_pred             EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccC
Q 015894          191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDT  270 (398)
Q Consensus       191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT  270 (398)
                      +....++               ..+.+++++++++|+.+...+   ++++    ++.    +.++.+.+.|+|.|.+.- 
T Consensus        87 v~g~~~~---------------~~~~~~i~~a~~~G~~~~~g~---~s~~----t~~----e~~~~a~~~GaD~I~~~p-  139 (430)
T PRK07028         87 ILGLADD---------------STIEDAVRAARKYGVRLMADL---INVP----DPV----KRAVELEELGVDYINVHV-  139 (430)
T ss_pred             EecCCCh---------------HHHHHHHHHHHHcCCEEEEEe---cCCC----CHH----HHHHHHHhcCCCEEEEEe-
Confidence            8644322               123567889999999876321   1111    122    235667789999987652 


Q ss_pred             cCc---CCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894          271 IGV---GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD  322 (398)
Q Consensus       271 ~G~---~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD  322 (398)
                       |.   ..+....+.++.+++.++ +||.+|+    |....|+..++++||+.|=
T Consensus       140 -g~~~~~~~~~~~~~l~~l~~~~~-iPI~a~G----GI~~~n~~~~l~aGAdgv~  188 (430)
T PRK07028        140 -GIDQQMLGKDPLELLKEVSEEVS-IPIAVAG----GLDAETAAKAVAAGADIVI  188 (430)
T ss_pred             -ccchhhcCCChHHHHHHHHhhCC-CcEEEEC----CCCHHHHHHHHHcCCCEEE
Confidence             22   122233457788877665 6899988    8999999999999998654

>TIGR00423 radical SAM domain protein, CofH subfamily

Probab=98.30  E-value=0.00016  Score=71.73  Aligned_cols=228  Identities=12%  Similarity=0.122  Sum_probs=141.7

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh-ccCCcEEEEeC-------------CHhhHH
Q 015894          114 NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN-VEGARFPVLTP-------------NLKGFE  179 (398)
Q Consensus       114 ~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~~-------------n~~~ie  179 (398)
                      ..++.++.++.++...+.|+..|-+.....|..-  .....++++.+++ .++..+.++++             ..+.++
T Consensus        34 ~~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~--~~~~~~i~~~Ik~~~~~i~~~~~s~~e~~~~~~~~g~~~~e~l~  111 (309)
T TIGR00423        34 YVLSLEEILEKVKEAVAKGATEVCIQGGLNPQLD--IEYYEELFRAIKQEFPDVHIHAFSPMEVYFLAKNEGLSIEEVLK  111 (309)
T ss_pred             ccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCC--HHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHH
Confidence            3589999999999999999999888754333210  1112345555553 35677766653             134578


Q ss_pred             HHHHcCCCEEE-Eec-cCchHHHhhhc--CCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 015894          180 AAVAAGAKEVA-IFA-SASESFSKSNI--NCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSK  255 (398)
Q Consensus       180 ~a~~~Gv~~v~-i~~-~~Sd~~~~~~~--~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~  255 (398)
                      +..++|++.+. +-. ..++-..+...  +.+.++    ..++++.|++.|+.+..+++  +|.+    -+++...+.+.
T Consensus       112 ~LkeAGl~~i~~~g~E~l~~~~~~~i~~~~~t~~~----~l~~i~~a~~~Gi~~~s~~i--iG~~----Et~ed~~~~l~  181 (309)
T TIGR00423       112 RLKKAGLDSMPGTGAEILDDSVRRKICPNKLSSDE----WLEVIKTAHRLGIPTTATMM--FGHV----ENPEHRVEHLL  181 (309)
T ss_pred             HHHHcCCCcCCCCcchhcCHHHHHhhCCCCCCHHH----HHHHHHHHHHcCCCceeeEE--ecCC----CCHHHHHHHHH
Confidence            88999999774 211 12233222221  224443    34778999999999987666  6644    25677777777


Q ss_pred             HHHhCCCCEE------E----EccCc-------CcCCHHHHHHHHHHHHhhCCCCe-EEEEeCCccchHHHHHHHHHHhC
Q 015894          256 QLYDMGCSEI------S----LGDTI-------GVGTPGTVIPMLEAVLDAVPVDK-LAVHFHDTYGQALSNILASLQMG  317 (398)
Q Consensus       256 ~l~~~Gad~I------~----L~DT~-------G~~~P~~v~~lv~~l~~~~p~~~-l~~H~Hnd~GlA~ANalaAl~aG  317 (398)
                      .+.+.+.+..      =    -.+|-       ...+|.+...+++..|-.+|.++ |..-. +++|.-  -...++.+|
T Consensus       182 ~lr~l~~~~~~f~~fiP~~f~~~~t~~l~~~~~~~~~~~e~lr~iA~~Rl~lp~~~~i~a~~-~~l~~~--~~~~~l~~G  258 (309)
T TIGR00423       182 RIRKIQEKTGGFTEFIPLPFQPENNPYLEGEVRKGASGIDDLKVIAISRILLNNIRNIQASW-VKLGLK--LAQVALEFG  258 (309)
T ss_pred             HHHhhchhhCCeeeEEeeeecCCCChhhccCCCCCCCHHHHHHHHHHHHHhcCCCccceecc-hhcCHH--HHHHHHhCC
Confidence            7877765421      1    13552       23677888888888887777532 44322 455543  247889999


Q ss_pred             CCEEeeccccCCCCCCCCCCCC-CccHHHHHHHHHhCCCC
Q 015894          318 ISTVDSSVSGLGGCPYAKGASG-NVATEDVVYMLNGLGVR  356 (398)
Q Consensus       318 a~~VD~Sv~GlGecp~a~graG-Na~lE~vv~~L~~~Gi~  356 (398)
                      |+-+++|+..====|.|+...+ .+..++++..+++.|..
T Consensus       259 and~~gt~~~e~v~~~ag~~~~~~~~~~~l~~~~~~~g~~  298 (309)
T TIGR00423       259 ANDLGGTLMEENISKAAGAKSGVGLTVEELIEAIKDAGRV  298 (309)
T ss_pred             CccCCcccccceeccccCCCCCCCCCHHHHHHHHHHcCCC
Confidence            9999988732110122222233 45789999999888763

This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.

>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family

Probab=98.26  E-value=0.00015  Score=72.76  Aligned_cols=224  Identities=17%  Similarity=0.163  Sum_probs=138.6

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh-ccCCcEEEEeC-------------CHhhHH
Q 015894          114 NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN-VEGARFPVLTP-------------NLKGFE  179 (398)
Q Consensus       114 ~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~~-------------n~~~ie  179 (398)
                      ..++.++.++.++.+.+.|++.|-+.....|.. + .....++++.+++ .+++.+.++++             ..+.++
T Consensus        70 ~~ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~-~-~~~~~~li~~Ik~~~~~i~~~~~s~~ei~~~~~~~g~~~~e~l~  147 (340)
T TIGR03699        70 YVLSVEEILQKIEELVAYGGTQILLQGGVNPDL-G-LDYYEDLFRAIKARFPHIHIHSFSPVEIVYIAKKEGLSLREVLE  147 (340)
T ss_pred             cCCCHHHHHHHHHHHHHcCCcEEEEecCCCCCC-C-HHHHHHHHHHHHHHCCCcCCCCCCHHHHHHHhccCCCCHHHHHH
Confidence            358999999999999999999998864433321 1 0112344555553 34554433322             145677


Q ss_pred             HHHHcCCCEEEE--eccCchHHHhhhc--CCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 015894          180 AAVAAGAKEVAI--FASASESFSKSNI--NCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSK  255 (398)
Q Consensus       180 ~a~~~Gv~~v~i--~~~~Sd~~~~~~~--~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~  255 (398)
                      ...++|++.+.-  .-..++-..+.-.  .+|.++.    .++++.+++.|+.+..+++  +| ..   -+++...+.++
T Consensus       148 ~Lk~aG~~~~~~~g~E~~~~~~~~~~~~~~~s~~~~----l~~i~~a~~~Gi~v~~~~i--iG-lg---Et~ed~~~~l~  217 (340)
T TIGR03699       148 RLKEAGLDSIPGGGAEILSDRVRKIISPKKISSEEW----LEVMETAHKLGLPTTATMM--FG-HV---ETLEDRIEHLE  217 (340)
T ss_pred             HHHHcCCCcCCCCcccccCHHHHHhhCCCCCCHHHH----HHHHHHHHHcCCCccceeE--ee-CC---CCHHHHHHHHH
Confidence            888999997752  1123344333321  2344443    5778999999999876666  55 22   25677778888


Q ss_pred             HHHhCCCCE------EEE----ccCc----CcCCHHHHHHHHHHHHhhCCCC-eEEEEeCCccchHHHHHHHHHHhCCCE
Q 015894          256 QLYDMGCSE------ISL----GDTI----GVGTPGTVIPMLEAVLDAVPVD-KLAVHFHDTYGQALSNILASLQMGIST  320 (398)
Q Consensus       256 ~l~~~Gad~------I~L----~DT~----G~~~P~~v~~lv~~l~~~~p~~-~l~~H~Hnd~GlA~ANalaAl~aGa~~  320 (398)
                      .+.+.+.+.      |-+    .+|-    ...+|.+...+++..|-.+|+. .|..-. ...|.  .....|+.+||+-
T Consensus       218 ~l~~l~~~~~~~~~fIP~~f~p~~tpl~~~~~~~~~e~l~~iA~~Rl~lp~~~~i~~~~-~~~g~--~~~~~~l~~Gan~  294 (340)
T TIGR03699       218 RIRELQDKTGGFTAFIPWTFQPGNTELGKKRPATSTEYLKVLAISRIFLDNIPNIQASW-VTQGK--EVGQLALHFGAND  294 (340)
T ss_pred             HHHHhchhhCCeeEEEeecccCCCCcccCCCCCCHHHHHHHHHHHHHcCCCCCcccCCc-cccCh--HHHHHHHhcCCcc
Confidence            888877654      221    2332    2467889999999988888853 132222 23333  3456789999999


Q ss_pred             EeeccccCCCCCCCCCCCCCcc---HHHHHHHHHhCCCC
Q 015894          321 VDSSVSGLGGCPYAKGASGNVA---TEDVVYMLNGLGVR  356 (398)
Q Consensus       321 VD~Sv~GlGecp~a~graGNa~---lE~vv~~L~~~Gi~  356 (398)
                      +++++.. |.  |.. .+|..+   +++++.+++++|..
T Consensus       295 ~~g~~~~-~~--~~~-~~g~~~~~~~~~~~~~i~~~g~~  329 (340)
T TIGR03699       295 FGSTMLE-EN--VVA-AAGATHRASREEIIRIIREAGFI  329 (340)
T ss_pred             CCCcccc-cc--ccc-cCCCCCCCCHHHHHHHHHHcCCC
Confidence            9988763 11  111 344433   79999999988874

members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.

>PRK07094 biotin synthase; Provisional

Probab=98.20  E-value=0.00032  Score=69.80  Aligned_cols=200  Identities=15%  Similarity=0.093  Sum_probs=127.3

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe--CCHhhHHHHHHcCCCEEEEe
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT--PNLKGFEAAVAAGAKEVAIF  192 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~n~~~ie~a~~~Gv~~v~i~  192 (398)
                      .++.++.++.++.+.+.|++.|-++....+.+ + ..+..++++.+++.++..+..-.  .+.+.++...++|++.+.+-
T Consensus        69 ~ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~-~-~~~l~~l~~~i~~~~~l~i~~~~g~~~~e~l~~Lk~aG~~~v~~g  146 (323)
T PRK07094         69 RLSPEEILECAKKAYELGYRTIVLQSGEDPYY-T-DEKIADIIKEIKKELDVAITLSLGERSYEEYKAWKEAGADRYLLR  146 (323)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEecCCCCCC-C-HHHHHHHHHHHHccCCceEEEecCCCCHHHHHHHHHcCCCEEEec
Confidence            46899999999999999999998864332211 0 11233444444433444433222  35677889999999999875


Q ss_pred             ccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE-----
Q 015894          193 ASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL-----  267 (398)
Q Consensus       193 ~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L-----  267 (398)
                      +-..+-.....++.+  ...+...+.++.+++.|+.+..+++  +|.|..   +.+.+.+.++.+.+++++.+.+     
T Consensus       147 lEs~~~~~~~~i~~~--~s~~~~~~~i~~l~~~Gi~v~~~~i--iGlpge---t~ed~~~~l~~l~~l~~~~v~~~~~~P  219 (323)
T PRK07094        147 HETADKELYAKLHPG--MSFENRIACLKDLKELGYEVGSGFM--VGLPGQ---TLEDLADDILFLKELDLDMIGIGPFIP  219 (323)
T ss_pred             cccCCHHHHHHhCCC--CCHHHHHHHHHHHHHcCCeecceEE--EECCCC---CHHHHHHHHHHHHhCCCCeeeeecccc
Confidence            444322222334332  2345566778999999998876666  565544   5688888888899999886543     


Q ss_pred             -ccC----cCcCCHHHHHHHHHHHHhhCCCCeE----EEEeCCccchHHHHHHHHHHhCCCEEeeccccC
Q 015894          268 -GDT----IGVGTPGTVIPMLEAVLDAVPVDKL----AVHFHDTYGQALSNILASLQMGISTVDSSVSGL  328 (398)
Q Consensus       268 -~DT----~G~~~P~~v~~lv~~l~~~~p~~~l----~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~Gl  328 (398)
                       ++|    .....+.++.++++..|..+|+..|    ++-.+...     -...++.+||+.+=+++..-
T Consensus       220 ~pgTpl~~~~~~~~~~~~~~~a~~R~~lp~~~i~~~~~~~~~~~~-----~~~~~l~~Gan~~~~~~~~~  284 (323)
T PRK07094        220 HPDTPLKDEKGGSLELTLKVLALLRLLLPDANIPATTALGTLNPD-----GREKGLKAGANVVMPNLTPG  284 (323)
T ss_pred             CCCCCcccCCCCCHHHHHHHHHHHHHhCcCCCCcccCCccccCch-----hHHHHHHcCCceecCCCCch
Confidence             221    1234567788899999888886433    33233222     23488999999776665433

>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit

Probab=98.20  E-value=0.00018  Score=72.56  Aligned_cols=226  Identities=14%  Similarity=0.125  Sum_probs=140.7

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh-ccCCcEEEEeC-------------CHhhHH
Q 015894          114 NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN-VEGARFPVLTP-------------NLKGFE  179 (398)
Q Consensus       114 ~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~~-------------n~~~ie  179 (398)
                      ..++.++.++.++.+.+.|+..|-+.....|..-  .....++++.+++ .++..+.++++             ..+.++
T Consensus        68 y~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~--~~~~~~i~~~Ik~~~~~i~~~~~t~~ei~~~~~~~g~~~~e~l~  145 (343)
T TIGR03551        68 YLLSLEEIAERAAEAWKAGATEVCIQGGIHPDLD--GDFYLDILRAVKEEVPGMHIHAFSPMEVYYGARNSGLSVEEALK  145 (343)
T ss_pred             ccCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCC--HHHHHHHHHHHHHHCCCceEEecCHHHHHHHHHHcCCCHHHHHH
Confidence            4589999999999999999999888743333210  1112344555553 35666665421             234578


Q ss_pred             HHHHcCCCEEEEeccCchHHHhh---hcC---CCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHH
Q 015894          180 AAVAAGAKEVAIFASASESFSKS---NIN---CTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYV  253 (398)
Q Consensus       180 ~a~~~Gv~~v~i~~~~Sd~~~~~---~~~---~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~  253 (398)
                      +..++|++.+..  +..+.+...   ++.   .+.+    ...+.++.|+++|+.+...++  +|.+ +   +.+...+.
T Consensus       146 ~LkeAGl~~i~~--~~~E~~~~~v~~~i~~~~~~~~----~~~~~i~~a~~~Gi~v~s~~i--~G~~-E---t~ed~~~~  213 (343)
T TIGR03551       146 RLKEAGLDSMPG--TAAEILDDEVRKVICPDKLSTA----EWIEIIKTAHKLGIPTTATIM--YGHV-E---TPEHWVDH  213 (343)
T ss_pred             HHHHhCcccccC--cchhhcCHHHHHhcCCCCCCHH----HHHHHHHHHHHcCCcccceEE--EecC-C---CHHHHHHH
Confidence            889999998762  112332211   111   1333    335788999999999987665  5644 2   45777777


Q ss_pred             HHHHHhCCCCE------EEEc----cCc--------CcCCHHHHHHHHHHHHhhCCCC--eEEEEeCCccchHHHHHHHH
Q 015894          254 SKQLYDMGCSE------ISLG----DTI--------GVGTPGTVIPMLEAVLDAVPVD--KLAVHFHDTYGQALSNILAS  313 (398)
Q Consensus       254 a~~l~~~Gad~------I~L~----DT~--------G~~~P~~v~~lv~~l~~~~p~~--~l~~H~Hnd~GlA~ANalaA  313 (398)
                      +..+.+++.+.      |-++    .|-        ..++|.+...+++..|-.+|+.  .|..-. .++|..  ....+
T Consensus       214 l~~lr~l~~~~~~~~~~iP~~f~~~gT~l~~~~~~~~~~~~~~~lr~iAv~Rl~lp~~~~~i~a~~-~~l~~~--~~~~~  290 (343)
T TIGR03551       214 LLILREIQEETGGFTEFVPLPFVHYNAPLYLKGMARPGPTGREDLKVHAIARILLHGLIDNIQASW-VKLGKK--LAQVA  290 (343)
T ss_pred             HHHHHHhhHHhCCeeEEEeccccCCCCccccccCCCCCCCHHHHHHHHHHHHHhCCCcccCeeccc-cccCHH--HHHHH
Confidence            77777666542      2222    332        2357889999999988878863  444444 345543  34788


Q ss_pred             HHhCCCEEeeccccCCCCCCCCCCCC-CccHHHHHHHHHhCCCC
Q 015894          314 LQMGISTVDSSVSGLGGCPYAKGASG-NVATEDVVYMLNGLGVR  356 (398)
Q Consensus       314 l~aGa~~VD~Sv~GlGecp~a~graG-Na~lE~vv~~L~~~Gi~  356 (398)
                      +.+||+-+++|+..=--=|-|+..++ ....++++...+..|..
T Consensus       291 l~~Gan~~~g~~~~e~v~~~~g~~~~~~~~~~~~~~~i~~~g~~  334 (343)
T TIGR03551       291 LRCGANDLGGTLMEESISRAAGASHGEYLSPEELEAIIEDAGRI  334 (343)
T ss_pred             HhCCCccCCccceecccccccCCCCCCCCCHHHHHHHHHHcCCC
Confidence            99999999988754100122222333 34779999999888874

This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.

>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family

Probab=98.04  E-value=0.00092  Score=67.66  Aligned_cols=229  Identities=15%  Similarity=0.107  Sum_probs=141.3

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEEEeC-------------CHhhHHH
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPVLTP-------------NLKGFEA  180 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~-------------n~~~ie~  180 (398)
                      .++.++.++.++...+.|+..|-+.+...|.. + .....++++.++ ..|++.+.++++             ..+.+++
T Consensus        78 ~l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~-~-~~~~~e~i~~Ik~~~p~i~i~~~~~~ei~~~~~~~g~~~~e~l~~  155 (351)
T TIGR03700        78 AMSLEEIVARVKEAYAPGATEVHIVGGLHPNL-P-FEWYLDMIRTLKEAYPDLHVKAFTAVEIHHFSKISGLPTEEVLDE  155 (351)
T ss_pred             CCCHHHHHHHHHHHHHCCCcEEEEecCCCCCC-C-HHHHHHHHHHHHHHCCCceEEeCCHHHHHHHHHHcCCCHHHHHHH
Confidence            47999999999999999999999886555431 1 112234455555 347777776542             1234788


Q ss_pred             HHHcCCCEEE-Eec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHH
Q 015894          181 AVAAGAKEVA-IFA-SASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLY  258 (398)
Q Consensus       181 a~~~Gv~~v~-i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~  258 (398)
                      ..++|++.+. .-. +.++...+ ++..+ ....++..++++.|+++|+++...++  +|.. +   ++++.++.+..+.
T Consensus       156 LkeAGld~~~~~g~E~~~~~v~~-~i~~~-~~~~~~~l~~i~~a~~~Gi~~~sg~i--~Glg-E---t~edrv~~l~~Lr  227 (351)
T TIGR03700       156 LKEAGLDSMPGGGAEIFAEEVRQ-QICPE-KISAERWLEIHRTAHELGLKTNATML--YGHI-E---TPAHRVDHMLRLR  227 (351)
T ss_pred             HHHcCCCcCCCCcccccCHHHHh-hcCCC-CCCHHHHHHHHHHHHHcCCCcceEEE--eeCC-C---CHHHHHHHHHHHH
Confidence            8999999775 211 11222211 22211 11234555778999999999987776  5532 2   4677777777777


Q ss_pred             hCCCCE------EEE----ccCc------CcCCHHHHHHHHHHHHhhCCCCe-EEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894          259 DMGCSE------ISL----GDTI------GVGTPGTVIPMLEAVLDAVPVDK-LAVHFHDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       259 ~~Gad~------I~L----~DT~------G~~~P~~v~~lv~~l~~~~p~~~-l~~H~Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                      +.+.+.      |-+    .+|-      ...+|.+...+++..|-.+|+++ |-.- -...|.  ..+..++.+||+-+
T Consensus       228 ~l~~~~~~f~~fiP~~f~~~~tpl~~~~~~~~~~~e~lr~iA~~Rl~l~~i~~i~a~-w~~~~~--~~~~~~L~~Gand~  304 (351)
T TIGR03700       228 ELQDETGGFQAFIPLAFQPDNNRLNRLLAKGPTGLDDLKTLAVSRLYLDNIPHIKAY-WVMLGL--KLAQVALAFGVNDL  304 (351)
T ss_pred             HhhHhhCCceEEEeecccCCCCcccCCCCCCCCHHHHHHHHHHHHHhcCCCCccccc-ccccCH--HHHHHHHhcCCCCC
Confidence            766543      333    2443      45788888998888887677521 1111 011233  35688999999999


Q ss_pred             eeccccCCCCCCCCCCCC-CccHHHHHHHHHhCCCC
Q 015894          322 DSSVSGLGGCPYAKGASG-NVATEDVVYMLNGLGVR  356 (398)
Q Consensus       322 D~Sv~GlGecp~a~graG-Na~lE~vv~~L~~~Gi~  356 (398)
                      ++|+..=--=|-|+...+ .+..++++..++..|..
T Consensus       305 ggt~~~e~v~~~~g~~~~~~~~~~~l~~~i~~~g~~  340 (351)
T TIGR03700       305 DGTVVEEKIGHDAGAKSPQALSKDELVRLIRDAGRV  340 (351)
T ss_pred             CccCccceeeccccCCCCCCCCHHHHHHHHHHcCCC
Confidence            888763111111211222 46889999999988874

Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=98.02  E-value=0.00062  Score=66.11  Aligned_cols=175  Identities=15%  Similarity=0.219  Sum_probs=110.1

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCc--ccCC-----------CCHHHHHHHHHhc----cCCcEEEEe-CCH--
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKW--VPQL-----------ADAKDVMAAIQNV----EGARFPVLT-PNL--  175 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~--~p~~-----------~D~~~v~~~i~~~----~~~~l~~l~-~n~--  175 (398)
                      -+.+.-+++++.|.+.|++.||+|+|.+.+.  .|..           ...+.+++.++++    .++.+..|+ .|.  
T Consensus        21 P~~~~~~~~~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~~~v~~ir~~~~~~plv~m~Y~Npi~  100 (256)
T TIGR00262        21 PTLETSLEIIKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCFELLKKVRQKHPNIPIGLLTYYNLIF  100 (256)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHh
Confidence            4678889999999999999999999876321  0100           0123444444432    344544444 453  


Q ss_pred             ----h-hHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHH
Q 015894          176 ----K-GFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKV  250 (398)
Q Consensus       176 ----~-~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l  250 (398)
                          + =++.+.++|++.+-+.+-                ..+...+.++.+|++|+....-++     |.   ++++.+
T Consensus       101 ~~G~e~f~~~~~~aGvdgviipDl----------------p~ee~~~~~~~~~~~gl~~i~lv~-----P~---T~~eri  156 (256)
T TIGR00262       101 RKGVEEFYAKCKEVGVDGVLVADL----------------PLEESGDLVEAAKKHGVKPIFLVA-----PN---ADDERL  156 (256)
T ss_pred             hhhHHHHHHHHHHcCCCEEEECCC----------------ChHHHHHHHHHHHHCCCcEEEEEC-----CC---CCHHHH
Confidence                2 256788999998887532                124456788999999998642222     32   356666


Q ss_pred             HHHHHHHHhCC-CCEEEEccCcCcC--CHHHHHHHHHHHHhhCCCCeEEEEeCCccchH-HHHHHHHHHhCCCEE
Q 015894          251 AYVSKQLYDMG-CSEISLGDTIGVG--TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQA-LSNILASLQMGISTV  321 (398)
Q Consensus       251 ~~~a~~l~~~G-ad~I~L~DT~G~~--~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA-~ANalaAl~aGa~~V  321 (398)
                      ..+++.  ..| +..+......|.-  .+..+.++++.+|+..+ .+|.+    ++|.. -.++-.++++||+.|
T Consensus       157 ~~i~~~--~~gfiy~vs~~G~TG~~~~~~~~~~~~i~~lr~~~~-~pi~v----gfGI~~~e~~~~~~~~GADgv  224 (256)
T TIGR00262       157 KQIAEK--SQGFVYLVSRAGVTGARNRAASALNELVKRLKAYSA-KPVLV----GFGISKPEQVKQAIDAGADGV  224 (256)
T ss_pred             HHHHHh--CCCCEEEEECCCCCCCcccCChhHHHHHHHHHhhcC-CCEEE----eCCCCCHHHHHHHHHcCCCEE
Confidence            666543  123 2234555667763  46679999999998754 24444    44444 457777889999854

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>PRK06256 biotin synthase; Validated

Probab=97.97  E-value=0.0042  Score=62.16  Aligned_cols=219  Identities=15%  Similarity=0.054  Sum_probs=135.8

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEec-CCCCCcccCCCCHHHHHHHHH---hccCCcEEEEe--CCHhhHHHHHHcCCCE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATS-FVSPKWVPQLADAKDVMAAIQ---NVEGARFPVLT--PNLKGFEAAVAAGAKE  188 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~-~~~~~~~p~~~D~~~v~~~i~---~~~~~~l~~l~--~n~~~ie~a~~~Gv~~  188 (398)
                      ..+.++.++.++.+.+.|+..+-+.. ...|.    ..+.+.+.+.++   +.++..+.+-.  .+.+.++...++|++.
T Consensus        90 ~~s~eeI~~~~~~~~~~g~~~~~l~~~g~~p~----~~~~~~~~e~i~~i~~~~~i~~~~~~g~l~~e~l~~LkeaG~~~  165 (336)
T PRK06256         90 WLDIEELIEAAKEAIEEGAGTFCIVASGRGPS----GKEVDQVVEAVKAIKEETDLEICACLGLLTEEQAERLKEAGVDR  165 (336)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEecCCCCC----chHHHHHHHHHHHHHhcCCCcEEecCCcCCHHHHHHHHHhCCCE
Confidence            46899999999999999987665432 22221    112234444444   33444443322  2567788899999999


Q ss_pred             EEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE-
Q 015894          189 VAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL-  267 (398)
Q Consensus       189 v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L-  267 (398)
                      +.+..-.|+...+ +++.+  ...+...++++.+++.|+.+...+.  +|. .   -+.+...+.++.+.+++++.+.+ 
T Consensus       166 v~~~lEts~~~~~-~i~~~--~t~~~~i~~i~~a~~~Gi~v~~~~I--~Gl-g---Et~ed~~~~~~~l~~l~~~~v~i~  236 (336)
T PRK06256        166 YNHNLETSRSYFP-NVVTT--HTYEDRIDTCEMVKAAGIEPCSGGI--IGM-G---ESLEDRVEHAFFLKELDADSIPIN  236 (336)
T ss_pred             EecCCccCHHHHh-hcCCC--CCHHHHHHHHHHHHHcCCeeccCeE--EeC-C---CCHHHHHHHHHHHHhCCCCEEeec
Confidence            8885544664433 33322  2345556778899999998876555  443 1   25788888888899999987654 


Q ss_pred             -----ccC----cCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCC
Q 015894          268 -----GDT----IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGAS  338 (398)
Q Consensus       268 -----~DT----~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~gra  338 (398)
                           +.|    ....+|.++.+++..+|-.+|+..|-+=++-..-+.-.. -+++ +||+.+=+.  ++=-      ..
T Consensus       237 ~l~P~pGT~l~~~~~~~~~e~l~~ia~~Rl~~p~~~I~~~~gr~~~~~~~~-~~~~-~g~~~~~~g--~~lt------~~  306 (336)
T PRK06256        237 FLNPIPGTPLENHPELTPLECLKTIAIFRLINPDKEIRIAGGREVNLRSLQ-PLGL-GGANSVIVG--NYLT------TV  306 (336)
T ss_pred             ccccCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCeeEecCchhhhchhhH-HHHh-ccCceeeEC--Cccc------CC
Confidence                 343    234678899999999998889877766555433232222 2233 688754221  1112      45


Q ss_pred             CCccHHHHHHHHHhCCCCC
Q 015894          339 GNVATEDVVYMLNGLGVRT  357 (398)
Q Consensus       339 GNa~lE~vv~~L~~~Gi~t  357 (398)
                      |+...+++ .+++++|+..
T Consensus       307 g~~~~~d~-~~~~~~g~~~  324 (336)
T PRK06256        307 GQPATADL-DMIEDLGFEI  324 (336)
T ss_pred             CCChHHHH-HHHHHCCCCc
Confidence            66655555 4777788754

>PRK08445 hypothetical protein; Provisional

Probab=97.96  E-value=0.0014  Score=66.33  Aligned_cols=223  Identities=12%  Similarity=0.078  Sum_probs=138.2

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHH---HHHHHHH-hccCCcEEEEeC-------------CHh
Q 015894          114 NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAK---DVMAAIQ-NVEGARFPVLTP-------------NLK  176 (398)
Q Consensus       114 ~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~---~v~~~i~-~~~~~~l~~l~~-------------n~~  176 (398)
                      ..++.++.++.++...+.|...|-+.....|.     .+.+   ++++.++ ..|+.++.++.+             ..+
T Consensus        71 y~l~~eeI~~~~~~a~~~g~~~i~~~gg~~~~-----~~~e~~~~l~~~Ik~~~p~i~~~a~s~~ei~~~a~~~~~~~~e  145 (348)
T PRK08445         71 YILSFEEIDKKIEELLAIGGTQILFQGGVHPK-----LKIEWYENLVSHIAQKYPTITIHGFSAVEIDYIAKISKISIKE  145 (348)
T ss_pred             eeCCHHHHHHHHHHHHHcCCCEEEEecCCCCC-----CCHHHHHHHHHHHHHHCCCcEEEEccHHHHHHHHHHhCCCHHH
Confidence            35799999999999999999876443222222     1333   4444555 457777766542             135


Q ss_pred             hHHHHHHcCCCEEE-E-eccCchHHHhhh--cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH
Q 015894          177 GFEAAVAAGAKEVA-I-FASASESFSKSN--INCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAY  252 (398)
Q Consensus       177 ~ie~a~~~Gv~~v~-i-~~~~Sd~~~~~~--~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~  252 (398)
                      .+++..++|++.+. + .=+.+|...+.-  -++|.++.    .++++.|+++|+++...++  +|.. +   +++...+
T Consensus       146 ~L~~LkeAGl~~~~g~glE~~~d~v~~~~~pk~~t~~~~----i~~i~~a~~~Gi~~~sg~i--~G~~-E---t~edr~~  215 (348)
T PRK08445        146 VLERLQAKGLSSIPGAGAEILSDRVRDIIAPKKLDSDRW----LEVHRQAHLIGMKSTATMM--FGTV-E---NDEEIIE  215 (348)
T ss_pred             HHHHHHHcCCCCCCCCceeeCCHHHHHhhCCCCCCHHHH----HHHHHHHHHcCCeeeeEEE--ecCC-C---CHHHHHH
Confidence            67888999999763 4 223344333322  25666654    4788999999999987776  5532 2   4566666


Q ss_pred             HHHHHHhCCC-----CEEE-----EccCc--------CcCCHHHHHHHHHHHHhhCCC-CeEEEEeCCccchHHHHHHHH
Q 015894          253 VSKQLYDMGC-----SEIS-----LGDTI--------GVGTPGTVIPMLEAVLDAVPV-DKLAVHFHDTYGQALSNILAS  313 (398)
Q Consensus       253 ~a~~l~~~Ga-----d~I~-----L~DT~--------G~~~P~~v~~lv~~l~~~~p~-~~l~~H~Hnd~GlA~ANalaA  313 (398)
                      .+..+.+++.     ..+.     -.+|-        ..++|.+.-.+++..|-.+|+ ..|-.-. -..|..+  +..|
T Consensus       216 ~l~~lreLq~~~~g~~~fi~~~~~p~~tpl~~~~~~~~~~~~~e~Lr~iAv~Rl~l~~~~~i~a~~-~~~g~~~--~~~~  292 (348)
T PRK08445        216 HWERIRDLQDETGGFRAFILWSFQPDNTPLKEEIPEIKKQSSNRYLRLLAVSRLFLDNFKNIQSSW-VTQGSYI--GQLA  292 (348)
T ss_pred             HHHHHHHHHHHhCCeeEEeccccCCCCCcccccCCCCCCCCHHHHHHHHHHHHHhCCCCCCccCCC-cccCHHH--HHHH
Confidence            6655555543     2221     22331        137788888888888776675 2222222 2445544  4788


Q ss_pred             HHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCC
Q 015894          314 LQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGV  355 (398)
Q Consensus       314 l~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi  355 (398)
                      +.+||+-+++|+..=--=+.|+...| ...|+++.+.+..|.
T Consensus       293 L~~Gand~~gt~~~e~i~~~ag~~~~-~~~~~~~~~i~~~g~  333 (348)
T PRK08445        293 LLFGANDLGSTMMEENVVKAAGASFR-MNQAEMIELIKDIGE  333 (348)
T ss_pred             HhcCCccCccccccccchhccCCCCC-CCHHHHHHHHHHcCC
Confidence            99999999999864211222322333 467899988888776

>PLN02389 biotin synthase

Probab=97.95  E-value=0.0065  Score=62.29  Aligned_cols=218  Identities=12%  Similarity=0.055  Sum_probs=136.5

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecC----CCCCcccCCCCHHHHHHHHHhccCCcEEEEe----CCHhhHHHHHHcCC
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSF----VSPKWVPQLADAKDVMAAIQNVEGARFPVLT----PNLKGFEAAVAAGA  186 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~----~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~----~n~~~ie~a~~~Gv  186 (398)
                      .++.++.++.++.+.+.|+..|-++..    ..++     .+.+.+.+.++.+....+.+.+    .+.+.++...++|+
T Consensus       115 ~Ls~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~-----~~~e~i~eiir~ik~~~l~i~~s~G~l~~E~l~~LkeAGl  189 (379)
T PLN02389        115 LMSKDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRK-----TNFNQILEYVKEIRGMGMEVCCTLGMLEKEQAAQLKEAGL  189 (379)
T ss_pred             cCCHHHHHHHHHHHHHcCCCEEEEEecccCCCCCh-----hHHHHHHHHHHHHhcCCcEEEECCCCCCHHHHHHHHHcCC
Confidence            489999999999999999999877521    1111     1245566666654432222222    25678899999999


Q ss_pred             CEEEEeccCch-HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC--CCC
Q 015894          187 KEVAIFASASE-SFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM--GCS  263 (398)
Q Consensus       187 ~~v~i~~~~Sd-~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~--Gad  263 (398)
                      +.+.+-.-.++ .|.+..-..+    .+...+.++.|++.|+.+...+.  +|. .+   +++...+.+..+.+.  +++
T Consensus       190 d~~~~~LeTs~~~y~~i~~~~s----~e~rl~ti~~a~~~Gi~v~sg~I--iGl-gE---t~edrv~~l~~Lr~L~~~~~  259 (379)
T PLN02389        190 TAYNHNLDTSREYYPNVITTRS----YDDRLETLEAVREAGISVCSGGI--IGL-GE---AEEDRVGLLHTLATLPEHPE  259 (379)
T ss_pred             CEEEeeecCChHHhCCcCCCCC----HHHHHHHHHHHHHcCCeEeEEEE--ECC-CC---CHHHHHHHHHHHHhcccCCc
Confidence            99988666666 3332222334    44445677899999999876655  553 22   467777777777777  456


Q ss_pred             EEEE------ccC----cCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccC-CCCC
Q 015894          264 EISL------GDT----IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGL-GGCP  332 (398)
Q Consensus       264 ~I~L------~DT----~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~Gl-Gecp  332 (398)
                      .|.+      +.|    ....+|.+..+++...|-.+|+..+.+-.-- .-+..-....|+.+||+-+=+  +++ =   
T Consensus       260 ~v~l~~l~P~~GTpL~~~~~~s~~e~lr~iAi~Rl~lP~~~i~i~~gr-~~l~~~~~~~~l~~GAN~~~~--g~~~L---  333 (379)
T PLN02389        260 SVPINALVAVKGTPLEDQKPVEIWEMVRMIATARIVMPKAMVRLSAGR-VRFSMAEQALCFLAGANSIFT--GDKLL---  333 (379)
T ss_pred             EEecccceecCCCcCCCCCCCCHHHHHHHHHHHHHHCCCccccccccc-cccChhHHHHHHHhCCCEEEE--CCccc---
Confidence            5543      355    2347788999999999888886433221111 112223457899999985532  111 1   


Q ss_pred             CCCCCCCCccHHHHHHHHHhCCCCC
Q 015894          333 YAKGASGNVATEDVVYMLNGLGVRT  357 (398)
Q Consensus       333 ~a~graGNa~lE~vv~~L~~~Gi~t  357 (398)
                          -+.+.+.++=+.+++++|+..
T Consensus       334 ----tt~g~~~~~d~~~~~~lg~~~  354 (379)
T PLN02389        334 ----TTPNNDFDADQAMFKELGLIP  354 (379)
T ss_pred             ----CCCCCChHHHHHHHHHcCCCc
Confidence                233444566667788888864

>PRK07360 FO synthase subunit 2; Reviewed

Probab=97.95  E-value=0.0012  Score=67.24  Aligned_cols=219  Identities=13%  Similarity=0.146  Sum_probs=139.9

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHH---Hh-ccCCcEEEEeC-------------CH
Q 015894          113 KNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAI---QN-VEGARFPVLTP-------------NL  175 (398)
Q Consensus       113 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i---~~-~~~~~l~~l~~-------------n~  175 (398)
                      ...++.++.++.++.+.+.|+..+-+.+...|.    ..+.+.+.+.+   ++ .+++.+.++++             ..
T Consensus        88 ~y~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~----~~~~e~~~~~i~~ik~~~~~i~i~a~s~~ei~~~~~~~G~~~~  163 (371)
T PRK07360         88 AFWLTIAEILEKAAEAVKRGATEVCIQGGLHPA----ADSLEFYLEILEAIKEEFPDIHLHAFSPMEVYFAAREDGLSYE  163 (371)
T ss_pred             CeeCCHHHHHHHHHHHHhCCCCEEEEccCCCCC----CCcHHHHHHHHHHHHHhCCCcceeeCCHHHHHHHHhhcCCCHH
Confidence            346899999999999999999999998654442    22344444444   43 35666666532             23


Q ss_pred             hhHHHHHHcCCCEEEEeccCchH----HHhh--hcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHH
Q 015894          176 KGFEAAVAAGAKEVAIFASASES----FSKS--NINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSK  249 (398)
Q Consensus       176 ~~ie~a~~~Gv~~v~i~~~~Sd~----~~~~--~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~  249 (398)
                      +.+++..++|++.+.-  ...++    ..+.  .-.++.++-    .++++.|+++|+.+...+.  +|. .+   +++.
T Consensus       164 e~l~~LkeAGld~~~~--t~~e~l~~~vr~~i~p~~~s~~~~----l~~i~~a~~~Gl~~~sg~i--~G~-gE---t~ed  231 (371)
T PRK07360        164 EVLKALKDAGLDSMPG--TAAEILVDEVRRIICPEKIKTAEW----IEIVKTAHKLGLPTTSTMM--YGH-VE---TPEH  231 (371)
T ss_pred             HHHHHHHHcCCCcCCC--cchhhccHHHHHhhCCCCCCHHHH----HHHHHHHHHcCCCceeeEE--eeC-CC---CHHH
Confidence            4588889999998851  11111    1110  112344333    5788999999999986666  442 12   5677


Q ss_pred             HHHHHHHHHhCCCCE------EEE---------ccCcCc---CCHHHHHHHHHHHHhhCCC--CeEEEEeCCccchHHHH
Q 015894          250 VAYVSKQLYDMGCSE------ISL---------GDTIGV---GTPGTVIPMLEAVLDAVPV--DKLAVHFHDTYGQALSN  309 (398)
Q Consensus       250 l~~~a~~l~~~Gad~------I~L---------~DT~G~---~~P~~v~~lv~~l~~~~p~--~~l~~H~Hnd~GlA~AN  309 (398)
                      .++.+..+.+++.+.      |-+         .+....   .+|.+..++++..|-.+|+  ..|-.-. ..+|..  .
T Consensus       232 rv~~l~~lr~l~~~~~g~~~fIp~~f~~~~Tpl~~~~~~~~~~~~~~~lr~iAi~Rl~lp~~~~~i~a~~-~~lg~~--~  308 (371)
T PRK07360        232 RIDHLLILREIQQETGGITEFVPLPFVHENAPLYERGRVKGGAPGLEDLLLYAVSRIFLGNWIKNIQASW-VKLGLK--L  308 (371)
T ss_pred             HHHHHHHHHHhchhhCCeeEEEeccccCCCCccccccccCCCCCHHHHHHHHHHHHHhcCCCCCCeeccc-eeeCHH--H
Confidence            888788888876654      322         222211   4678888888888877886  3343333 344433  3


Q ss_pred             HHHHHHhCCCEEeecccc------CCCCCCCCCCCC-CccHHHHHHHHHhCCCC
Q 015894          310 ILASLQMGISTVDSSVSG------LGGCPYAKGASG-NVATEDVVYMLNGLGVR  356 (398)
Q Consensus       310 alaAl~aGa~~VD~Sv~G------lGecp~a~graG-Na~lE~vv~~L~~~Gi~  356 (398)
                      ...++.+||+.+.+++.+      .|.      ... ....+++...++..|+.
T Consensus       309 ~~~~l~~Gan~~~~~~~~~~v~~~~G~------~~~~~~~~~~~~~~i~~~G~~  356 (371)
T PRK07360        309 AQVALNCGANDLGGTLMEEHITKMAGA------SGGTYMSVEELQWMIKSIGRI  356 (371)
T ss_pred             HHHHHhcCCccCcCcCcccceecccCC------CCCCCCCHHHHHHHHHHcCCc
Confidence            566899999999888765      222      222 25889999999988874

>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed

Probab=97.90  E-value=0.0018  Score=66.03  Aligned_cols=265  Identities=10%  Similarity=0.061  Sum_probs=153.3

Q ss_pred             hccccccCCCCCccccCccCCCCCCCccchhhhhhhccCCCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCC
Q 015894           55 KQVRNVSCTNLNGYLSKAHYSSSCTDNSTKDLTSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLA  134 (398)
Q Consensus        55 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~  134 (398)
                      ++.|....|+.-.+.++.|++-.|+..+.        .          |+.+-........++.++.++.++.+.+.|+.
T Consensus        61 ~~ir~~~~G~~v~l~~~in~Tn~C~~~C~--------Y----------C~f~~~~~~~~~~ls~eEI~~~a~~~~~~Gv~  122 (371)
T PRK09240         61 QRLTRQRFGNTISLYTPLYLSNYCANDCT--------Y----------CGFSMSNKIKRKTLDEEEIEREMAAIKKLGFE  122 (371)
T ss_pred             HHHHHHHcCCEEEEEeceEEcccccCcCC--------c----------CCCCCCCCCccccCCHHHHHHHHHHHHhCCCC
Confidence            34444445665566667777655544311        0          11211111112468999999999999999999


Q ss_pred             EEEEecCCCCCcccCCCCHHHHHHHHHhc----cCCcEEEEeCCHhhHHHHHHcCCCEEEEeccCc-hHHHhhhcC-CCH
Q 015894          135 VVEATSFVSPKWVPQLADAKDVMAAIQNV----EGARFPVLTPNLKGFEAAVAAGAKEVAIFASAS-ESFSKSNIN-CTI  208 (398)
Q Consensus       135 ~IEvG~~~~~~~~p~~~D~~~v~~~i~~~----~~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~S-d~~~~~~~~-~s~  208 (398)
                      .|-+...-.|.    ..+.+.+.+.++.+    |.+.+.+..-+.++++...++|++.+.+..-+. +.+.+ ++. ..+
T Consensus       123 ~i~lvgGe~p~----~~~~e~l~~~i~~Ik~~~p~i~i~~g~lt~e~l~~Lk~aGv~r~~i~lET~~~~~~~-~i~~~g~  197 (371)
T PRK09240        123 HILLLTGEHEA----KVGVDYIRRALPIAREYFSSVSIEVQPLSEEEYAELVELGLDGVTVYQETYNPATYA-KHHLRGP  197 (371)
T ss_pred             EEEEeeCCCCC----CCCHHHHHHHHHHHHHhCCCceeccCCCCHHHHHHHHHcCCCEEEEEEecCCHHHHH-HhCcCCC
Confidence            99775433332    13456666666543    344443333467889999999999999987773 44322 231 011


Q ss_pred             HHHHHHHHHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCC------CEE---EEccCcC------
Q 015894          209 EDSLIRYRDVALAARELSIP-VRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGC------SEI---SLGDTIG------  272 (398)
Q Consensus       209 ~~~l~~~~~~v~~ak~~G~~-v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Ga------d~I---~L~DT~G------  272 (398)
                      ....+...+.++.|++.|+. |...++  +|.+.    +.+...+++..+.+++.      ..|   .|....|      
T Consensus       198 ~h~~~~rl~~i~~a~~aG~~~v~~g~i--~Glge----~~~d~~~~a~~l~~L~~~~~~~~~sv~~~~l~P~~g~~~~~~  271 (371)
T PRK09240        198 KRDFEYRLETPERAGRAGIRKIGLGAL--LGLSD----WRTDALMTALHLRYLQRKYWQAEYSISFPRLRPCTGGIEPAS  271 (371)
T ss_pred             CCCHHHHHHHHHHHHHcCCCeeceEEE--ecCCc----cHHHHHHHHHHHHHHHHhCCCCceeeecCccccCCCCCCCCC
Confidence            11233344567889999996 765555  45332    34556666655554443      133   3444444      


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHH---HHHHHHHHhCCCEEeeccccCCCCCCCCCC-C--------CC
Q 015894          273 VGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQAL---SNILASLQMGISTVDSSVSGLGGCPYAKGA-S--------GN  340 (398)
Q Consensus       273 ~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~---ANalaAl~aGa~~VD~Sv~GlGecp~a~gr-a--------GN  340 (398)
                      .++|.++.++|..+|-.+|...|-+=+--...+.-   .....++.||   .-+.++|+..      . .        ..
T Consensus       272 ~~~~~e~l~~ia~~Rl~lP~~~i~~s~g~~~~lrd~~~~~~~~~~~ag---~~~~~G~y~~------~~~~~~qf~~~~~  342 (371)
T PRK09240        272 IVSDKQLVQLICAFRLFLPDVEISLSTRESPEFRDNLIPLGITKMSAG---SSTQPGGYAD------DHKELEQFEISDD  342 (371)
T ss_pred             CCCHHHHHHHHHHHHHHCcccccEEecCCCHHHHHHHHhhcceeeccC---ccCCCCCcCC------CCCCcCCccCCCC
Confidence            25788999999999988898666665554322221   1111223333   1233444433      1 1        25


Q ss_pred             ccHHHHHHHHHhCCCCC
Q 015894          341 VATEDVVYMLNGLGVRT  357 (398)
Q Consensus       341 a~lE~vv~~L~~~Gi~t  357 (398)
                      -+.++.+.+++++|+++
T Consensus       343 r~~~~~~~~i~~~g~~~  359 (371)
T PRK09240        343 RSVEEVAAALRAKGLQP  359 (371)
T ss_pred             CCHHHHHHHHHHCCCee
Confidence            67899999999999865

>PRK13125 trpA tryptophan synthase subunit alpha; Provisional

Probab=97.87  E-value=0.0038  Score=60.02  Aligned_cols=177  Identities=19%  Similarity=0.167  Sum_probs=109.9

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCC-CCc-ccCCC-CHH--------HHHHHHHhccCCcEEEEe------CCHhh
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVS-PKW-VPQLA-DAK--------DVMAAIQNVEGARFPVLT------PNLKG  177 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~-~~~-~p~~~-D~~--------~v~~~i~~~~~~~l~~l~------~n~~~  177 (398)
                      ..+.++-.++++.|.+. ++.||+|.|.+ |.. .|... +..        ++++.+++..+..+..++      .+...
T Consensus        14 ~p~~~~~~~~~~~l~~~-ad~iElgip~sdp~adG~~i~~~~~~a~~~g~~~~v~~vr~~~~~Pl~lM~y~n~~~~~~~~   92 (244)
T PRK13125         14 YPNVESFKEFIIGLVEL-VDILELGIPPKYPKYDGPVIRKSHRKVKGLDIWPLLEEVRKDVSVPIILMTYLEDYVDSLDN   92 (244)
T ss_pred             CCCHHHHHHHHHHHHhh-CCEEEECCCCCCCCCCCHHHHHHHHHHHHcCcHHHHHHHhccCCCCEEEEEecchhhhCHHH
Confidence            35778889999999998 99999998654 321 22221 112        233344433344443332      23333


Q ss_pred             -HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHH
Q 015894          178 -FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQ  256 (398)
Q Consensus       178 -ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~  256 (398)
                       ++.+.++|++.|-+.+-.-             |+.+...+++++++++|+++...+.     |   .++++.+..+++.
T Consensus        93 ~i~~~~~~Gadgvii~dlp~-------------e~~~~~~~~~~~~~~~Gl~~~~~v~-----p---~T~~e~l~~~~~~  151 (244)
T PRK13125         93 FLNMARDVGADGVLFPDLLI-------------DYPDDLEKYVEIIKNKGLKPVFFTS-----P---KFPDLLIHRLSKL  151 (244)
T ss_pred             HHHHHHHcCCCEEEECCCCC-------------CcHHHHHHHHHHHHHcCCCEEEEEC-----C---CCCHHHHHHHHHh
Confidence             6778899999998853211             2234566788999999999864333     2   2456666665542


Q ss_pred             HHhCCCCEE--EEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccch-HHHHHHHHHHhCCCEE
Q 015894          257 LYDMGCSEI--SLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQ-ALSNILASLQMGISTV  321 (398)
Q Consensus       257 l~~~Gad~I--~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~Gl-A~ANalaAl~aGa~~V  321 (398)
                          .-..+  .+.-..|.-.+..+.+.++.+|+..+..+|.+    +.|. ...++-.++++||+.+
T Consensus       152 ----~~~~l~msv~~~~g~~~~~~~~~~i~~lr~~~~~~~i~v----~gGI~~~e~i~~~~~~gaD~v  211 (244)
T PRK13125        152 ----SPLFIYYGLRPATGVPLPVSVERNIKRVRNLVGNKYLVV----GFGLDSPEDARDALSAGADGV  211 (244)
T ss_pred             ----CCCEEEEEeCCCCCCCchHHHHHHHHHHHHhcCCCCEEE----eCCcCCHHHHHHHHHcCCCEE
Confidence                22333  23223465678889999999998876545543    5666 3456666679999854

>CHL00200 trpA tryptophan synthase alpha subunit; Provisional

Probab=97.86  E-value=0.0015  Score=63.82  Aligned_cols=175  Identities=15%  Similarity=0.181  Sum_probs=111.4

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCc--cc--CC---------CCHHHHHHHHHhc---cCCcEEEEe-CCH---
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKW--VP--QL---------ADAKDVMAAIQNV---EGARFPVLT-PNL---  175 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~--~p--~~---------~D~~~v~~~i~~~---~~~~l~~l~-~n~---  175 (398)
                      -+.+.-.++++.|.+.|+|.||+|+|.+.+.  .|  |.         ...+.+++.++++   .++.+..|+ -|.   
T Consensus        26 P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~  105 (263)
T CHL00200         26 PDIVITKKALKILDKKGADIIELGIPYSDPLADGPIIQEASNRALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLH  105 (263)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHH
Confidence            4678889999999999999999999876321  01  10         0122344444432   345555555 353   


Q ss_pred             hh----HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHH
Q 015894          176 KG----FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVA  251 (398)
Q Consensus       176 ~~----ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~  251 (398)
                      -|    ++.+.++|++.+-+.+=                -++...+..+.++++|+....-++     |.   ++++.+.
T Consensus       106 ~G~e~F~~~~~~aGvdgviipDL----------------P~ee~~~~~~~~~~~gi~~I~lv~-----Pt---T~~eri~  161 (263)
T CHL00200        106 YGINKFIKKISQAGVKGLIIPDL----------------PYEESDYLISVCNLYNIELILLIA-----PT---SSKSRIQ  161 (263)
T ss_pred             hCHHHHHHHHHHcCCeEEEecCC----------------CHHHHHHHHHHHHHcCCCEEEEEC-----CC---CCHHHHH
Confidence            13    56778999999888542                124456778899999998753232     32   3556666


Q ss_pred             HHHHHHHhCC-CCEEEEccCcCc--CCHHHHHHHHHHHHhhCCCCeEEEEeCCccchH-HHHHHHHHHhCCCEE
Q 015894          252 YVSKQLYDMG-CSEISLGDTIGV--GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQA-LSNILASLQMGISTV  321 (398)
Q Consensus       252 ~~a~~l~~~G-ad~I~L~DT~G~--~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA-~ANalaAl~aGa~~V  321 (398)
                      .+++..  -| +..+...=+.|.  ..|..+.++++.+|+.. +.|+.+    .+|-. ..++.....+|||.|
T Consensus       162 ~i~~~a--~gFIY~vS~~GvTG~~~~~~~~~~~~i~~ir~~t-~~Pi~v----GFGI~~~e~~~~~~~~GADGv  228 (263)
T CHL00200        162 KIARAA--PGCIYLVSTTGVTGLKTELDKKLKKLIETIKKMT-NKPIIL----GFGISTSEQIKQIKGWNINGI  228 (263)
T ss_pred             HHHHhC--CCcEEEEcCCCCCCCCccccHHHHHHHHHHHHhc-CCCEEE----ECCcCCHHHHHHHHhcCCCEE
Confidence            665432  12 233344666666  45788999999999865 346665    56666 345566677899854

>PLN02591 tryptophan synthase

Probab=97.85  E-value=0.0029  Score=61.35  Aligned_cols=175  Identities=18%  Similarity=0.225  Sum_probs=109.1

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCc--cc--CC---------CCHHHHHHHHHhc---cCCcEEEEeC-CH---
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKW--VP--QL---------ADAKDVMAAIQNV---EGARFPVLTP-NL---  175 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~--~p--~~---------~D~~~v~~~i~~~---~~~~l~~l~~-n~---  175 (398)
                      -+.+.-+++++.|.+.|+|.||+|+|.+.+.  .|  |.         ...+.+++.++++   .++.+..|+. |.   
T Consensus        13 P~~e~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~N~i~~   92 (250)
T PLN02591         13 PDLDTTAEALRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISMLKEVAPQLSCPIVLFTYYNPILK   92 (250)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHH
Confidence            4677889999999999999999999876321  01  11         0223444444432   3445555553 53   


Q ss_pred             hh----HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHH
Q 015894          176 KG----FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVA  251 (398)
Q Consensus       176 ~~----ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~  251 (398)
                      -|    ++.+.++|++.+-+..=            .    ++...+..+.++++|+.....++     |   .++.+.+.
T Consensus        93 ~G~~~F~~~~~~aGv~GviipDL------------P----~ee~~~~~~~~~~~gl~~I~lv~-----P---tt~~~ri~  148 (250)
T PLN02591         93 RGIDKFMATIKEAGVHGLVVPDL------------P----LEETEALRAEAAKNGIELVLLTT-----P---TTPTERMK  148 (250)
T ss_pred             hHHHHHHHHHHHcCCCEEEeCCC------------C----HHHHHHHHHHHHHcCCeEEEEeC-----C---CCCHHHHH
Confidence            24    46778899999888532            1    25556788999999998753222     2   13455666


Q ss_pred             HHHHHHHhCC-CCEEEEccCcCc--CCHHHHHHHHHHHHhhCCCCeEEEEeCCccchH-HHHHHHHHHhCCCEE
Q 015894          252 YVSKQLYDMG-CSEISLGDTIGV--GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQA-LSNILASLQMGISTV  321 (398)
Q Consensus       252 ~~a~~l~~~G-ad~I~L~DT~G~--~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA-~ANalaAl~aGa~~V  321 (398)
                      .+++.  .-| +..|...-+.|.  ..|..+.++++.+|+. ++.|+-+    -+|.. -.++-..++.|||.|
T Consensus       149 ~ia~~--~~gFIY~Vs~~GvTG~~~~~~~~~~~~i~~vk~~-~~~Pv~v----GFGI~~~e~v~~~~~~GADGv  215 (250)
T PLN02591        149 AIAEA--SEGFVYLVSSTGVTGARASVSGRVESLLQELKEV-TDKPVAV----GFGISKPEHAKQIAGWGADGV  215 (250)
T ss_pred             HHHHh--CCCcEEEeeCCCCcCCCcCCchhHHHHHHHHHhc-CCCceEE----eCCCCCHHHHHHHHhcCCCEE
Confidence            65543  123 233444556666  5589999999999985 3445443    23433 346666778889854

>PRK08444 hypothetical protein; Provisional

Probab=97.85  E-value=0.0015  Score=66.27  Aligned_cols=227  Identities=14%  Similarity=0.123  Sum_probs=142.7

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEEEeCC-------------HhhHH
Q 015894          114 NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPVLTPN-------------LKGFE  179 (398)
Q Consensus       114 ~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~n-------------~~~ie  179 (398)
                      +.++.++.++.++...+.|+..|-+-+...|.. + +....++++.++ ..|++.+.++++.             .+.++
T Consensus        78 y~ls~eeI~~~a~~a~~~G~~ei~iv~G~~p~~-~-~e~y~e~ir~Ik~~~p~i~i~a~s~~Ei~~~a~~~g~~~~e~l~  155 (353)
T PRK08444         78 YTMSHEEILEIVKNSVKRGIKEVHIVSAHNPNY-G-YEWYLEIFKKIKEAYPNLHVKAMTAAEVDFLSRKFGKSYEEVLE  155 (353)
T ss_pred             ccCCHHHHHHHHHHHHHCCCCEEEEeccCCCCC-C-HHHHHHHHHHHHHHCCCceEeeCCHHHHHHHHHHcCCCHHHHHH
Confidence            568999999999999999999998876555542 1 112234555555 3577888876531             23467


Q ss_pred             HHHHcCCCEEEEeccCchHH-----HhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHH
Q 015894          180 AAVAAGAKEVAIFASASESF-----SKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVS  254 (398)
Q Consensus       180 ~a~~~Gv~~v~i~~~~Sd~~-----~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a  254 (398)
                      +..++|++.+.-  ..-+++     .+--..++   .-++..++++.|+++|+++...++  ||-. +   ++++.++.+
T Consensus       156 ~LkeAGl~~~~g--~~aEi~~~~vr~~I~p~k~---~~~~~~~i~~~a~~~Gi~~~sg~l--~G~g-E---t~edrv~hl  224 (353)
T PRK08444        156 DMLEYGVDSMPG--GGAEIFDEEVRKKICKGKV---SSERWLEIHKYWHKKGKMSNATML--FGHI-E---NREHRIDHM  224 (353)
T ss_pred             HHHHhCcccCCC--CCchhcCHHHHhhhCCCCC---CHHHHHHHHHHHHHcCCCccceeE--EecC-C---CHHHHHHHH
Confidence            888999986532  111222     11111222   234555778999999999987766  5533 2   467777766


Q ss_pred             HHHHhCCCCE------EEE----ccC----cCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCc-cchHHHHHHHHHHhCCC
Q 015894          255 KQLYDMGCSE------ISL----GDT----IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDT-YGQALSNILASLQMGIS  319 (398)
Q Consensus       255 ~~l~~~Gad~------I~L----~DT----~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd-~GlA~ANalaAl~aGa~  319 (398)
                      ..+.+...+.      |-+    .+|    ....+|.+...+++..|-.+|++   -|..-. .-++...+..|+.+||+
T Consensus       225 ~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~e~Lr~iAi~Rl~L~~i---~ni~a~w~~~g~~~~q~~L~~Ga~  301 (353)
T PRK08444        225 LRLRDLQDKTGGFNAFIPLVYQRENNYLKVEKFPSSQEILKTIAISRILLDNI---PHIKAYWATLTLNLALVAQEFGAN  301 (353)
T ss_pred             HHHHHhccccCCceEEEecccCCCCCcCCCCCCCCHHHHHHHHHHHHHhcCCC---CccccccccCcHHHHHHHHhcCCc
Confidence            6776664432      233    444    12477888888888887666653   122222 12456778899999999


Q ss_pred             EEeeccccCCCCCCCCCCCC-CccHHHHHHHHHhCCCC
Q 015894          320 TVDSSVSGLGGCPYAKGASG-NVATEDVVYMLNGLGVR  356 (398)
Q Consensus       320 ~VD~Sv~GlGecp~a~graG-Na~lE~vv~~L~~~Gi~  356 (398)
                      =+++|+..====|.|+..++ ..+.+++...+++.|..
T Consensus       302 D~ggt~~~e~i~~~ag~~~~~~~~~~~l~~~i~~~g~~  339 (353)
T PRK08444        302 DLDGTIEKESIQSAAGAKSANGLSLEDFIFLIKDSGFI  339 (353)
T ss_pred             cCccccccccchhhccCCCCCCCCHHHHHHHHHHcCCC
Confidence            99999743111222222333 56789999999988863

>PRK15108 biotin synthase; Provisional

Probab=97.84  E-value=0.017  Score=58.55  Aligned_cols=219  Identities=14%  Similarity=0.091  Sum_probs=140.1

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecC-CCCCcccCCCCHHHHHHHHHhcc--CCcEEE-Ee-CCHhhHHHHHHcCCCEE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSF-VSPKWVPQLADAKDVMAAIQNVE--GARFPV-LT-PNLKGFEAAVAAGAKEV  189 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~-~~~~~~p~~~D~~~v~~~i~~~~--~~~l~~-l~-~n~~~ie~a~~~Gv~~v  189 (398)
                      .++.++.++.++.+.+.|+..|-++.. ..|.    ..+.+.+.+.++.++  ++.+.+ +. .+.+.+++..++|++.+
T Consensus        75 ~ls~eEI~~~a~~~~~~G~~~i~i~~~g~~p~----~~~~e~i~~~i~~ik~~~i~v~~s~G~ls~e~l~~LkeAGld~~  150 (345)
T PRK15108         75 LMEVEQVLESARKAKAAGSTRFCMGAAWKNPH----ERDMPYLEQMVQGVKAMGLETCMTLGTLSESQAQRLANAGLDYY  150 (345)
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEEecCCCCC----cchHHHHHHHHHHHHhCCCEEEEeCCcCCHHHHHHHHHcCCCEE
Confidence            479999999999999999999977532 2331    123444555555433  333321 11 24678899999999999


Q ss_pred             EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC--CCCEEEE
Q 015894          190 AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM--GCSEISL  267 (398)
Q Consensus       190 ~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~--Gad~I~L  267 (398)
                      .+..-+++-+-. ++..  ...++.-.+.++.|++.|+.+...+.  +|.   +. ++++.++.+..+.++  ..+.|.+
T Consensus       151 n~~leT~p~~f~-~I~~--~~~~~~rl~~i~~a~~~G~~v~sg~i--~Gl---gE-t~ed~v~~~~~l~~l~~~~~~ip~  221 (345)
T PRK15108        151 NHNLDTSPEFYG-NIIT--TRTYQERLDTLEKVRDAGIKVCSGGI--VGL---GE-TVKDRAGLLLQLANLPTPPESVPI  221 (345)
T ss_pred             eeccccChHhcC-CCCC--CCCHHHHHHHHHHHHHcCCceeeEEE--EeC---CC-CHHHHHHHHHHHHhccCCCCEEEe
Confidence            997776654332 2211  12344555777899999998875554  553   22 567888888888888  4455432


Q ss_pred             ------ccC-c---CcCCHHHHHHHHHHHHhhCCCCeEEEEe-CCccchHHHHHHHHHHhCCCEEeecccc-CCCCCCCC
Q 015894          268 ------GDT-I---GVGTPGTVIPMLEAVLDAVPVDKLAVHF-HDTYGQALSNILASLQMGISTVDSSVSG-LGGCPYAK  335 (398)
Q Consensus       268 ------~DT-~---G~~~P~~v~~lv~~l~~~~p~~~l~~H~-Hnd~GlA~ANalaAl~aGa~~VD~Sv~G-lGecp~a~  335 (398)
                            ..| .   ..++|.+..++|...|-.+|+..+.+=. -.+.|-  -....|+.+||+.+  -+.+ +=.     
T Consensus       222 ~~~~P~~gTpl~~~~~~~~~e~lr~iAi~Rl~lp~~~i~i~~g~~~~~~--~~~~~~l~~Gan~~--~~g~~~lt-----  292 (345)
T PRK15108        222 NMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNE--QTQAMCFMAGANSI--FYGCKLLT-----  292 (345)
T ss_pred             CCccCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecccHhHhCh--hhHHHHHHcCCcEE--EECCcccc-----
Confidence                  455 1   2367889999999998888873333211 112222  34688999999987  2222 112     


Q ss_pred             CCCCCccHHHHHHHHHhCCCCC
Q 015894          336 GASGNVATEDVVYMLNGLGVRT  357 (398)
Q Consensus       336 graGNa~lE~vv~~L~~~Gi~t  357 (398)
                       ..| .+.++.+.++++.|+.+
T Consensus       293 -t~g-~~~~~~~~~i~~~g~~~  312 (345)
T PRK15108        293 -TPN-PEEDKDLQLFRKLGLNP  312 (345)
T ss_pred             -CCC-CCHHHHHHHHHHcCCCc
Confidence             334 57899999999998854

>TIGR00433 bioB biotin synthetase

Probab=97.75  E-value=0.023  Score=55.53  Aligned_cols=219  Identities=12%  Similarity=0.032  Sum_probs=129.8

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEec-CCCCCcccCCCCHHHHHHHHHh-c--cCCcEEEEe--CCHhhHHHHHHcCCCE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATS-FVSPKWVPQLADAKDVMAAIQN-V--EGARFPVLT--PNLKGFEAAVAAGAKE  188 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~-~~~~~~~p~~~D~~~v~~~i~~-~--~~~~l~~l~--~n~~~ie~a~~~Gv~~  188 (398)
                      ..+.++.++.++.+.+.|+..+-+.. ...+.    ..+..+++..+.+ .  .++++.+-.  .+.+.++...++|++.
T Consensus        61 ~~~~eei~~~~~~~~~~g~~~~~l~~~g~~~~----~~~~~~~~~~i~~~~~~~~i~~~~~~g~~~~e~l~~Lk~aG~~~  136 (296)
T TIGR00433        61 LKKVDEVLEEARKAKAAGATRFCLVASGRGPK----DREFMEYVEAMVQIVEEMGLKTCATLGLLDPEQAKRLKDAGLDY  136 (296)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEEecCCCC----hHHHHHHHHHHHHHHHhCCCeEEecCCCCCHHHHHHHHHcCCCE
Confidence            35678888889989999998764422 11111    0122333333331 1  244432221  2567788899999999


Q ss_pred             EEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEE--
Q 015894          189 VAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEIS--  266 (398)
Q Consensus       189 v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~--  266 (398)
                      +.+..-.++-..+ +++.  ...++...++++.+++.|+.+.+.++  +|. .+   +.+.+.+.++.+.+.|++.+.  
T Consensus       137 v~i~~E~~~~~~~-~i~~--~~s~~~~~~ai~~l~~~Gi~v~~~~i--~Gl-~e---t~~d~~~~~~~l~~l~~~~i~l~  207 (296)
T TIGR00433       137 YNHNLDTSQEFYS-NIIS--THTYDDRVDTLENAKKAGLKVCSGGI--FGL-GE---TVEDRIGLALALANLPPESVPIN  207 (296)
T ss_pred             EEEcccCCHHHHh-hccC--CCCHHHHHHHHHHHHHcCCEEEEeEE--EeC-CC---CHHHHHHHHHHHHhCCCCEEEee
Confidence            9886665553322 2222  12345555778889999999876665  553 22   568888888889999988663  


Q ss_pred             ----EccC----cCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCC
Q 015894          267 ----LGDT----IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGAS  338 (398)
Q Consensus       267 ----L~DT----~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~gra  338 (398)
                          ++.|    ....++.+..+++...|..+|...|-+=+=--.-+.---..-|+.+||+.+=+  +|+=-      -.
T Consensus       208 ~l~p~~gT~l~~~~~~s~~~~~~~ia~~r~~lp~~~i~~~~~~~~~~~~~~~~~~l~~G~n~i~~--g~~~~------~~  279 (296)
T TIGR00433       208 FLVKIKGTPLADNKELSADDALKTIALARIIMPKAEIRLAGGREVNMRELQQAMCFMAGANSIFV--GDYLT------TT  279 (296)
T ss_pred             eeEEcCCCccCCCCCCCHHHHHHHHHHHHHHCCcceEEEeCCcchhhhhhHHHHHHHhcCceEEE--cCccc------CC
Confidence                2243    12345578888999999888864442211111111211122478999987653  44433      57


Q ss_pred             CCccHHHHHHHHHhCC
Q 015894          339 GNVATEDVVYMLNGLG  354 (398)
Q Consensus       339 GNa~lE~vv~~L~~~G  354 (398)
                      |+..-++=+.+++++|
T Consensus       280 g~~~~~~~~~~~~~~~  295 (296)
T TIGR00433       280 GNPEEDKDKKLLAKLG  295 (296)
T ss_pred             CCCCcHHHHHHHHHcC
Confidence            7888744445666655

Catalyzes the last step of the biotin biosynthesis pathway.

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=97.74  E-value=0.0014  Score=60.87  Aligned_cols=167  Identities=19%  Similarity=0.200  Sum_probs=101.1

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-cCCcEEEE--eCC--HhhHHHHHHcCCCEEE
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-EGARFPVL--TPN--LKGFEAAVAAGAKEVA  190 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~~~~l~~l--~~n--~~~ie~a~~~Gv~~v~  190 (398)
                      ++.++-+++++.| +-|++.||+|......      ..-+.+..+++. ++..+.+=  +.+  ...++.+.++|++.|-
T Consensus         9 ~~~~~a~~~~~~l-~~~v~~iev~~~l~~~------~g~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~Gad~i~   81 (206)
T TIGR03128         9 LDIEEALELAEKV-ADYVDIIEIGTPLIKN------EGIEAVKEMKEAFPDRKVLADLKTMDAGEYEAEQAFAAGADIVT   81 (206)
T ss_pred             CCHHHHHHHHHHc-ccCeeEEEeCCHHHHH------hCHHHHHHHHHHCCCCEEEEEEeeccchHHHHHHHHHcCCCEEE
Confidence            5678889999999 8999999998432211      112345555533 44333321  123  2368899999999887


Q ss_pred             EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc--
Q 015894          191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG--  268 (398)
Q Consensus       191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~--  268 (398)
                      +......               ..+.+++++++++|+.+...+.    +|    .+   ..+.++.+.+.|+|.+.+.  
T Consensus        82 vh~~~~~---------------~~~~~~i~~~~~~g~~~~~~~~----~~----~t---~~~~~~~~~~~g~d~v~~~pg  135 (206)
T TIGR03128        82 VLGVADD---------------ATIKGAVKAAKKHGKEVQVDLI----NV----KD---KVKRAKELKELGADYIGVHTG  135 (206)
T ss_pred             EeccCCH---------------HHHHHHHHHHHHcCCEEEEEec----CC----CC---hHHHHHHHHHcCCCEEEEcCC
Confidence            6543221               2345678889999998875432    11    11   2233445567899998774  


Q ss_pred             ---cCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          269 ---DTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       269 ---DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                         ++.+...    .+.++.+++.+|..++.+=    -|.-..|.-..+++|++.|-+
T Consensus       136 ~~~~~~~~~~----~~~i~~l~~~~~~~~i~v~----GGI~~~n~~~~~~~Ga~~v~v  185 (206)
T TIGR03128       136 LDEQAKGQNP----FEDLQTILKLVKEARVAVA----GGINLDTIPDVIKLGPDIVIV  185 (206)
T ss_pred             cCcccCCCCC----HHHHHHHHHhcCCCcEEEE----CCcCHHHHHHHHHcCCCEEEE
Confidence               1222222    2345566665654444432    355567888889999987654

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=97.73  E-value=0.0053  Score=58.14  Aligned_cols=152  Identities=22%  Similarity=0.309  Sum_probs=106.7

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hcc---CCcEEEE-eCCHhhHHHHHHcCCCEEE
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVE---GARFPVL-TPNLKGFEAAVAAGAKEVA  190 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~---~~~l~~l-~~n~~~ie~a~~~Gv~~v~  190 (398)
                      -+.++-+++++.|.+.|++.+|+++- +|.       ..+.++.++ +.+   +..+.+= +.+.++++.++++|++.+-
T Consensus        22 ~~~~~a~~~~~al~~~Gi~~iEit~~-~~~-------a~~~i~~l~~~~~~~p~~~vGaGTV~~~~~~~~a~~aGA~Fiv   93 (213)
T PRK06552         22 ESKEEALKISLAVIKGGIKAIEVTYT-NPF-------ASEVIKELVELYKDDPEVLIGAGTVLDAVTARLAILAGAQFIV   93 (213)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEECC-Ccc-------HHHHHHHHHHHcCCCCCeEEeeeeCCCHHHHHHHHHcCCCEEE
Confidence            37888899999999999999999984 332       345555555 343   3444433 3688999999999999765


Q ss_pred             EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE--c
Q 015894          191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL--G  268 (398)
Q Consensus       191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L--~  268 (398)
                           |+.+               -.+++++|++.|+.+-.           +-.+++++..    +.++|+|.|.+  +
T Consensus        94 -----sP~~---------------~~~v~~~~~~~~i~~iP-----------G~~T~~E~~~----A~~~Gad~vklFPa  138 (213)
T PRK06552         94 -----SPSF---------------NRETAKICNLYQIPYLP-----------GCMTVTEIVT----ALEAGSEIVKLFPG  138 (213)
T ss_pred             -----CCCC---------------CHHHHHHHHHcCCCEEC-----------CcCCHHHHHH----HHHcCCCEEEECCc
Confidence                 2221               13678899999998641           3346766544    45799999988  3


Q ss_pred             cCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894          269 DTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       269 DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                      |..|   |.    +++.++..+|.+++-.    +-|.-..|.-.-+.+|++.+
T Consensus       139 ~~~G---~~----~ik~l~~~~p~ip~~a----tGGI~~~N~~~~l~aGa~~v  180 (213)
T PRK06552        139 STLG---PS----FIKAIKGPLPQVNVMV----TGGVNLDNVKDWFAAGADAV  180 (213)
T ss_pred             ccCC---HH----HHHHHhhhCCCCEEEE----ECCCCHHHHHHHHHCCCcEE
Confidence            4333   44    3666777778666553    45777899999999999865

>TIGR02351 thiH thiazole biosynthesis protein ThiH

Probab=97.72  E-value=0.004  Score=63.43  Aligned_cols=224  Identities=13%  Similarity=0.091  Sum_probs=130.9

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc----cCCcEEEEeCCHhhHHHHHHcCCCEE
Q 015894          114 NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV----EGARFPVLTPNLKGFEAAVAAGAKEV  189 (398)
Q Consensus       114 ~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~----~~~~l~~l~~n~~~ie~a~~~Gv~~v  189 (398)
                      ..++.++..+.++.+.+.|+..|-+.....|.    ..+.+.+.+.++.+    |.+.+.+..-+.++++...++|++.+
T Consensus       101 ~~Ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~----~~~~e~l~eii~~Ik~~~p~i~Iei~~lt~e~~~~Lk~aGv~r~  176 (366)
T TIGR02351       101 KKLNEEEIEREIEAIKKSGFKEILLVTGESEK----AAGVEYIAEAIKLAREYFSSLAIEVQPLNEEEYKKLVEAGLDGV  176 (366)
T ss_pred             CcCCHHHHHHHHHHHHhCCCCEEEEeeCCCCC----CCCHHHHHHHHHHHHHhCCccccccccCCHHHHHHHHHcCCCEE
Confidence            35789999999999999999988776443332    23455566666543    33333332236788999999999999


Q ss_pred             EEeccCchHHHhhhcC-CCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCC-----
Q 015894          190 AIFASASESFSKSNIN-CTIEDSLIRYRDVALAARELSIP-VRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGC-----  262 (398)
Q Consensus       190 ~i~~~~Sd~~~~~~~~-~s~~~~l~~~~~~v~~ak~~G~~-v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Ga-----  262 (398)
                      .+..-+.+.-...++. ..+....+...+.++.|++.|+. |...++  +|.+. +   ......++..+..++.     
T Consensus       177 ~i~lET~~~~~y~~i~~~g~~h~~~~rl~~i~~a~~aG~~~v~~g~i--~Gl~e-~---~~d~~~~a~~l~~L~~~~~~~  250 (366)
T TIGR02351       177 TVYQETYNEKKYKKHHLAGKKKDFRYRLNTPERAAKAGMRKIGIGAL--LGLDD-W---RTDAFFTAYHLRYLQKKYWKT  250 (366)
T ss_pred             EEEeecCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHcCCCeeceeEE--EeCch-h---HHHHHHHHHHHHHHHHHcCCC
Confidence            9987765322222332 11112233344667899999997 665444  55442 2   2333333333333222     


Q ss_pred             -CEE---EEcc------CcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe----eccccC
Q 015894          263 -SEI---SLGD------TIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD----SSVSGL  328 (398)
Q Consensus       263 -d~I---~L~D------T~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD----~Sv~Gl  328 (398)
                       ..|   .|..      ....++|.++.+++..+|-.+|...|-+=+--..-+.  ..  .+..|+..+.    +.++|+
T Consensus       251 ~~sv~~~~l~P~~g~~~~~~~l~~~~~~~~i~~~R~~~P~~~i~~s~g~~~~lr--d~--~~~~~~~~~~a~~~~~~G~y  326 (366)
T TIGR02351       251 EISISVPRLRPCTNGLKPKVIVTDRELVQIICAYRLFDPFVEISLSTRESKKFR--DN--VIPLGITKMSAGSSTEPGGY  326 (366)
T ss_pred             CccccccccccCCCCCCCCCcCCHHHHHHHHHHHHHhCcccccEEecCCCHHHH--HH--HHhhcceeeccCcccCCCCc
Confidence             222   2332      2345678999999999998889766666554432221  11  1123332221    123333


Q ss_pred             CCCCCCCCCCC---------CccHHHHHHHHHhCCCCC
Q 015894          329 GGCPYAKGASG---------NVATEDVVYMLNGLGVRT  357 (398)
Q Consensus       329 Gecp~a~graG---------Na~lE~vv~~L~~~Gi~t  357 (398)
                      -.      ..|         +-++++++.+++..|+.+
T Consensus       327 ~~------~~~~~~qf~~~d~r~~~~~~~~i~~~g~~~  358 (366)
T TIGR02351       327 SS------EKKGLEQFEISDERSVAEVEEDLRSKGLQP  358 (366)
T ss_pred             CC------CCCCcCcccCCCCCCHHHHHHHHHHCCCee
Confidence            32      233         378899999999999865

Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.

>PRK09613 thiH thiamine biosynthesis protein ThiH; Reviewed

Probab=97.67  E-value=0.014  Score=61.36  Aligned_cols=226  Identities=15%  Similarity=0.175  Sum_probs=138.6

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccC-------C-cEEE-Ee-CCHhhHHHHHH
Q 015894          114 NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEG-------A-RFPV-LT-PNLKGFEAAVA  183 (398)
Q Consensus       114 ~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~-------~-~l~~-l~-~n~~~ie~a~~  183 (398)
                      ..++.++.++-++.+.+.|+..+-+-+.-.|..    .+.+.+.+.++.+..       . ++.+ +. .+.++++...+
T Consensus       113 ~~Ls~EEI~~ea~~~~~~G~~~i~LvsGe~p~~----~~~eyi~e~i~~I~~~~~~~g~i~~v~inig~lt~eey~~Lke  188 (469)
T PRK09613        113 KKLTQEEIREEVKALEDMGHKRLALVAGEDPPN----CDIEYILESIKTIYSTKHGNGEIRRVNVNIAPTTVENYKKLKE  188 (469)
T ss_pred             eECCHHHHHHHHHHHHHCCCCEEEEEeCCCCCC----CCHHHHHHHHHHHHHhccccCcceeeEEEeecCCHHHHHHHHH
Confidence            468999999999999999999888855444321    245555555553321       1 2222 12 36789999999


Q ss_pred             cCCCEEEEeccCchHHHhhhc--C---CCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894          184 AGAKEVAIFASASESFSKSNI--N---CTIEDSLIRYRDVALAARELSIP-VRGYLSCVVGCPVEGMVPPSKVAYVSKQL  257 (398)
Q Consensus       184 ~Gv~~v~i~~~~Sd~~~~~~~--~---~s~~~~l~~~~~~v~~ak~~G~~-v~~~l~~~fg~~~~~r~~~~~l~~~a~~l  257 (398)
                      +|++.+.++--+.+.-....+  +   .+.++-    .++++.|++.|+. |...+.  ||.++ ++.+.-.++.-++.+
T Consensus       189 aGv~~~~l~qETY~~ety~~~hp~g~k~~y~~R----l~t~~rA~~aGi~~Vg~G~L--~GLge-~~~E~~~l~~hl~~L  261 (469)
T PRK09613        189 AGIGTYQLFQETYHKPTYEKMHPSGPKSDYDWR----LTAMDRAMEAGIDDVGIGVL--FGLYD-YKFEVLGLLMHAEHL  261 (469)
T ss_pred             cCCCEEEeccccCCHHHHHhcCCCCCCCCHHHH----HHHHHHHHHcCCCeeCeEEE--EcCCC-CHHHHHHHHHHHHHH
Confidence            999999988766322112222  1   233333    3567889999997 764444  66543 232222222222223


Q ss_pred             H---hCCCCEEEEc------cC-c----CcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          258 Y---DMGCSEISLG------DT-I----GVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       258 ~---~~Gad~I~L~------DT-~----G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      .   ..|++.|.++      +| .    -..++.++..+|..+|-.+|...|-+=++....+=    -..+..|+..+++
T Consensus       262 ~~~~gvgp~tIsvprl~P~~Gtpl~~~~~~vsd~e~lriiA~~RL~~P~~~I~lStRE~~~~r----~~~~~~gvt~~sa  337 (469)
T PRK09613        262 EERFGVGPHTISVPRLRPADGSDLENFPYLVSDEDFKKIVAILRLAVPYTGMILSTRESAELR----REVLELGVSQISA  337 (469)
T ss_pred             HHhhCCCCccccccceecCCCCCcccCCCCCCHHHHHHHHHHHHHHCCCCCceeecCCCHHHH----HHHHhhcceeecc
Confidence            2   2256766644      44 2    23677899999999999899777888777774422    2345679988853


Q ss_pred             -ccccCCCCCCCCC----------CCCCccHHHHHHHHHhCCCC
Q 015894          324 -SVSGLGGCPYAKG----------ASGNVATEDVVYMLNGLGVR  356 (398)
Q Consensus       324 -Sv~GlGecp~a~g----------raGNa~lE~vv~~L~~~Gi~  356 (398)
                       |-.|.|+  |+..          -+=+-++++|+..|.+.|+.
T Consensus       338 gs~t~~gg--y~~~~~~~~~~QF~~~d~r~~~ev~~~l~~~g~~  379 (469)
T PRK09613        338 GSRTGVGG--YSEEEEEEEKAQFELGDHRSLDEVIRELCEMGYI  379 (469)
T ss_pred             cccCCCCC--cCCCCCCCCCCCccCCCCCCHHHHHHHHHHCCCe
Confidence             2235555  2211          12356788999988877764

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=97.64  E-value=0.0043  Score=58.73  Aligned_cols=148  Identities=25%  Similarity=0.261  Sum_probs=104.6

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEE-EeCCHhhHHHHHHcCCCEEEEec
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPV-LTPNLKGFEAAVAAGAKEVAIFA  193 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~-l~~n~~~ie~a~~~Gv~~v~i~~  193 (398)
                      .+.++-+++++.|.+.|++.||+++ ..|.       ..+.++.++ +.|+..+.+ -+.+..+++.++++|++.+-...
T Consensus        24 ~~~~~a~~i~~al~~~Gi~~iEitl-~~~~-------~~~~I~~l~~~~p~~~IGAGTVl~~~~a~~a~~aGA~FivsP~   95 (212)
T PRK05718         24 NKLEDAVPLAKALVAGGLPVLEVTL-RTPA-------ALEAIRLIAKEVPEALIGAGTVLNPEQLAQAIEAGAQFIVSPG   95 (212)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEec-CCcc-------HHHHHHHHHHHCCCCEEEEeeccCHHHHHHHHHcCCCEEECCC
Confidence            5788899999999999999999994 3332       334555555 567655543 33578899999999999775422


Q ss_pred             cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCc
Q 015894          194 SASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGV  273 (398)
Q Consensus       194 ~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~  273 (398)
                       .+                   .+++++|++.|+..-.           +-.+|.+    +.++.++|++.+.+-+    
T Consensus        96 -~~-------------------~~vi~~a~~~~i~~iP-----------G~~TptE----i~~a~~~Ga~~vKlFP----  136 (212)
T PRK05718         96 -LT-------------------PPLLKAAQEGPIPLIP-----------GVSTPSE----LMLGMELGLRTFKFFP----  136 (212)
T ss_pred             -CC-------------------HHHHHHHHHcCCCEeC-----------CCCCHHH----HHHHHHCCCCEEEEcc----
Confidence             11                   2567888999987641           2345655    4457789999999944    


Q ss_pred             CCHHHH---HHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhC
Q 015894          274 GTPGTV---IPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMG  317 (398)
Q Consensus       274 ~~P~~v---~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aG  317 (398)
                         .+.   ..+++.++.-+|.+++-    -+=|....|.-.=+.+|
T Consensus       137 ---a~~~gg~~~lk~l~~p~p~~~~~----ptGGV~~~ni~~~l~ag  176 (212)
T PRK05718        137 ---AEASGGVKMLKALAGPFPDVRFC----PTGGISPANYRDYLALP  176 (212)
T ss_pred             ---chhccCHHHHHHHhccCCCCeEE----EeCCCCHHHHHHHHhCC
Confidence               332   35677788778876555    35577778888888889

>TIGR01182 eda Entner-Doudoroff aldolase

Probab=97.54  E-value=0.013  Score=55.18  Aligned_cols=152  Identities=26%  Similarity=0.344  Sum_probs=107.8

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEEEe-CCHhhHHHHHHcCCCEEEEec
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPVLT-PNLKGFEAAVAAGAKEVAIFA  193 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~  193 (398)
                      .+.++-+++++.|.+.|++.||+++-. |       +..+.++.++ +.|++.+.+=+ .+.++++.++++|++.+    
T Consensus        17 ~~~e~a~~~~~al~~~Gi~~iEit~~t-~-------~a~~~i~~l~~~~~~~~vGAGTVl~~~~a~~a~~aGA~Fi----   84 (204)
T TIGR01182        17 DDVDDALPLAKALIEGGLRVLEVTLRT-P-------VALDAIRLLRKEVPDALIGAGTVLNPEQLRQAVDAGAQFI----   84 (204)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEeCCC-c-------cHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEE----
Confidence            478888999999999999999999832 3       2344555555 45665554433 58899999999999987    


Q ss_pred             cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCc
Q 015894          194 SASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGV  273 (398)
Q Consensus       194 ~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~  273 (398)
                       +|+.+.               .+++++|+++|+.+-.           +-.+|.++.    .+.++|++.|-+      
T Consensus        85 -vsP~~~---------------~~v~~~~~~~~i~~iP-----------G~~TptEi~----~A~~~Ga~~vKl------  127 (204)
T TIGR01182        85 -VSPGLT---------------PELAKHAQDHGIPIIP-----------GVATPSEIM----LALELGITALKL------  127 (204)
T ss_pred             -ECCCCC---------------HHHHHHHHHcCCcEEC-----------CCCCHHHHH----HHHHCCCCEEEE------
Confidence             233210               3678899999997642           335676644    456799998765      


Q ss_pred             CCHHH-H--HHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894          274 GTPGT-V--IPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       274 ~~P~~-v--~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                       .|.. +  ..+++.++.-+|++++-    -+-|....|.-.=+.+|+..+
T Consensus       128 -FPA~~~GG~~yikal~~plp~i~~~----ptGGV~~~N~~~~l~aGa~~v  173 (204)
T TIGR01182       128 -FPAEVSGGVKMLKALAGPFPQVRFC----PTGGINLANVRDYLAAPNVAC  173 (204)
T ss_pred             -CCchhcCCHHHHHHHhccCCCCcEE----ecCCCCHHHHHHHHhCCCEEE
Confidence             3333 2  25788888878876554    456777789999999998754

2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida

>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed

Probab=97.45  E-value=0.018  Score=58.28  Aligned_cols=208  Identities=15%  Similarity=0.153  Sum_probs=135.9

Q ss_pred             ccCCCCC--CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh----ccCCcEEEEe---CCHhh
Q 015894          107 DGLQNEK--NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN----VEGARFPVLT---PNLKG  177 (398)
Q Consensus       107 DG~Q~~~--~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~----~~~~~l~~l~---~n~~~  177 (398)
                      ++.+..+  +.+..+....++++-.+.+-+.|=-.++..-++.+    .+.+...++.    .+.+.+....   .+.+.
T Consensus        15 ~~~yAVgAfN~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g----~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~   90 (347)
T PRK09196         15 EHGYGVPAFNVNNLEQVQAIMEAADETDSPVILQASAGARKYAG----EPFLRHLILAAVEEYPHIPVVMHQDHGNSPAT   90 (347)
T ss_pred             HcCceEEEeeeCCHHHHHHHHHHHHHhCCCEEEECCccHhhhCC----HHHHHHHHHHHHHhCCCCcEEEECCCCCCHHH
Confidence            3444443  35788888999999999999987665543322221    2223333332    2224444433   35678


Q ss_pred             HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCC-------C---------
Q 015894          178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCP-------V---------  241 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~-------~---------  241 (398)
                      +.+++++|...|.+=.|  ... ..|...+.++.++.-++++++|+..|+.|++.|-..-|.+       +         
T Consensus        91 i~~ai~~GftSVMiDgS--~l~-~~~~~~p~eENI~~Tkevve~Ah~~Gv~VEaELG~vgg~e~~~~g~~~~~~~~~~~~  167 (347)
T PRK09196         91 CQRAIQLGFTSVMMDGS--LKA-DGKTPASYEYNVDVTRKVVEMAHACGVSVEGELGCLGSLETGMGGEEDGHGAEGKLS  167 (347)
T ss_pred             HHHHHHcCCCEEEecCC--CCc-ccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCccccccccccCcccccccc
Confidence            89999999998887333  110 1234457889999999999999999999998887643322       1         


Q ss_pred             --CCCCCHHHHHHHHHHHHhCCCCEE--EEccCcCcC----CHH---HHHHHHHHHHhhCCCCeEEEEeCCcc-------
Q 015894          242 --EGMVPPSKVAYVSKQLYDMGCSEI--SLGDTIGVG----TPG---TVIPMLEAVLDAVPVDKLAVHFHDTY-------  303 (398)
Q Consensus       242 --~~r~~~~~l~~~a~~l~~~Gad~I--~L~DT~G~~----~P~---~v~~lv~~l~~~~p~~~l~~H~Hnd~-------  303 (398)
                        ..-++|+...++++   +.|+|.+  .+.-.=|.-    .|.   ==.++++.+++.+|++||.+|+=...       
T Consensus       168 ~~~~~T~PeeA~~Fv~---~TgvD~LAvaiGT~HG~Yk~~~~p~~~~LdfdrL~eI~~~v~~vPLVLHGgSG~~~~~~~~  244 (347)
T PRK09196        168 HDQLLTDPEEAADFVK---KTQVDALAIAIGTSHGAYKFTRKPTGDVLAIDRIKEIHARLPNTHLVMHGSSSVPQELLDI  244 (347)
T ss_pred             hhhcCCCHHHHHHHHH---HhCcCeEhhhhccccCCCCCCCCCChhhccHHHHHHHHhcCCCCCEEEeCCCCCCHHHHHH
Confidence              11467777666554   5788854  333344443    242   12346788888887789999987755       


Q ss_pred             ------------chHHHHHHHHHHhCCCEEeec
Q 015894          304 ------------GQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       304 ------------GlA~ANalaAl~aGa~~VD~S  324 (398)
                                  |........|++.|+.-|+..
T Consensus       245 ~~~~g~~~~~~~G~~~e~i~~ai~~GI~KINi~  277 (347)
T PRK09196        245 INEYGGDMPETYGVPVEEIQEGIKHGVRKVNID  277 (347)
T ss_pred             HHHhcCCccccCCCCHHHHHHHHHCCCceEEeC
Confidence                        778899999999999877543

>PRK05927 hypothetical protein; Provisional

Probab=97.41  E-value=0.011  Score=59.90  Aligned_cols=225  Identities=12%  Similarity=0.082  Sum_probs=134.5

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHH---HHHHh-ccCCcEEEEeC-------------CHh
Q 015894          114 NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVM---AAIQN-VEGARFPVLTP-------------NLK  176 (398)
Q Consensus       114 ~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~---~~i~~-~~~~~l~~l~~-------------n~~  176 (398)
                      ..++.++.++.++...+.|+..+-+.+...|+     .+.+.+.   +.+++ .|++.+-++.+             ..+
T Consensus        74 y~ls~eei~~~a~~~~~~G~~~i~i~gG~~p~-----~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e  148 (350)
T PRK05927         74 YLLSFDEFRSLMQRYVSAGVKTVLLQGGVHPQ-----LGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQ  148 (350)
T ss_pred             cccCHHHHHHHHHHHHHCCCCEEEEeCCCCCC-----CCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHH
Confidence            47899999999999999999998887665554     2344444   44442 35554433321             234


Q ss_pred             hHHHHHHcCCCEEE---EeccCchHHHhhhcCCCHHH-HHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH
Q 015894          177 GFEAAVAAGAKEVA---IFASASESFSKSNINCTIED-SLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAY  252 (398)
Q Consensus       177 ~ie~a~~~Gv~~v~---i~~~~Sd~~~~~~~~~s~~~-~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~  252 (398)
                      .+++..++|++.+.   .-++.+. +.+ .  +++.+ ..+.=.++++.|+++|+++...++  ||- .+   +++..++
T Consensus       149 ~l~~Lk~aGl~~l~g~~~Et~~~~-~~~-~--~~p~k~~~~~rl~~i~~A~~lGi~~~sg~l--~G~-gE---t~e~ri~  218 (350)
T PRK05927        149 ALERLWDAGQRTIPGGGAEILSER-VRK-I--ISPKKMGPDGWIQFHKLAHRLGFRSTATMM--FGH-VE---SPEDILL  218 (350)
T ss_pred             HHHHHHHcCcccCCCCCchhCCHH-Hhh-c--cCCCCCCHHHHHHHHHHHHHcCCCcCceeE--Eee-CC---CHHHHHH
Confidence            57788899997554   2222222 211 1  12212 122334778999999999987777  442 12   4566666


Q ss_pred             HHHHHHhCCCC--EEE--Ec------cCc---C---cCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHh
Q 015894          253 VSKQLYDMGCS--EIS--LG------DTI---G---VGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQM  316 (398)
Q Consensus       253 ~a~~l~~~Gad--~I~--L~------DT~---G---~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~a  316 (398)
                      .+..+.+.+-+  .|.  |+      +|-   .   ..+|.+...+++..|-.+|++++ +-. --..++.-.+..|+.+
T Consensus       219 ~l~~Lr~lqd~~~gf~~fIp~~~~~~~tpl~~~~~~~~s~~e~Lr~iAv~Rl~lp~~~~-i~~-~w~~~G~~~~q~~L~~  296 (350)
T PRK05927        219 HLQTLRDAQDENPGFYSFIPWSYKPGNTALGRRVPHQASPELYYRILAVARIFLDNFDH-IAA-SWFGEGKEEGAKGLHY  296 (350)
T ss_pred             HHHHHHHhhHhhCCeeeeeecCcCCCCCccccCCCCCCCHHHHHHHHHHHHHhCCCCCc-ccC-CccccCHHHHHHHHhC
Confidence            55555554311  111  33      443   1   47888888888888887886431 111 1223455667789999


Q ss_pred             CCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCC
Q 015894          317 GISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVR  356 (398)
Q Consensus       317 Ga~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~  356 (398)
                      ||+-+++++..====|-|++..+ ...+++...++..|..
T Consensus       297 GanDlggt~~~e~v~~~ag~~~~-~~~~~l~~~i~~~G~~  335 (350)
T PRK05927        297 GADDFGGTILDESVHKCTGWDLQ-SSEEEICAMILSEGFI  335 (350)
T ss_pred             CCccccCCCccceeeccCCCCCc-CCHHHHHHHHHHcCCC
Confidence            99999988743111122232333 3688888888877764

>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS)

Probab=97.41  E-value=0.016  Score=53.42  Aligned_cols=165  Identities=20%  Similarity=0.157  Sum_probs=102.4

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh-ccCCcEEEEe--CC--HhhHHHHHHcCCCEEE
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN-VEGARFPVLT--PN--LKGFEAAVAAGAKEVA  190 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~--~n--~~~ie~a~~~Gv~~v~  190 (398)
                      .+.++-.++++.|.+. ++.||+|.+...      ....+.++.+++ .++..+.+..  .+  ...++.+.++|++.+.
T Consensus        10 ~~~~~~~~~~~~l~~~-i~~ieig~~~~~------~~g~~~i~~i~~~~~~~~i~~~~~v~~~~~~~~~~~~~aGad~i~   82 (202)
T cd04726          10 LDLEEALELAKKVPDG-VDIIEAGTPLIK------SEGMEAVRALREAFPDKIIVADLKTADAGALEAEMAFKAGADIVT   82 (202)
T ss_pred             CCHHHHHHHHHHhhhc-CCEEEcCCHHHH------HhCHHHHHHHHHHCCCCEEEEEEEeccccHHHHHHHHhcCCCEEE
Confidence            5778889999999999 999999854311      111244555554 3565554421  22  2346888999999888


Q ss_pred             EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE-c-
Q 015894          191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL-G-  268 (398)
Q Consensus       191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L-~-  268 (398)
                      +.....+               +.+.+++++++++|+.+.+.+.        +..+++....    +...|+|.+.+ . 
T Consensus        83 ~h~~~~~---------------~~~~~~i~~~~~~g~~~~v~~~--------~~~t~~e~~~----~~~~~~d~v~~~~~  135 (202)
T cd04726          83 VLGAAPL---------------STIKKAVKAAKKYGKEVQVDLI--------GVEDPEKRAK----LLKLGVDIVILHRG  135 (202)
T ss_pred             EEeeCCH---------------HHHHHHHHHHHHcCCeEEEEEe--------CCCCHHHHHH----HHHCCCCEEEEcCc
Confidence            7654321               2345678889999987753222        1234555443    55679998777 2 


Q ss_pred             ---cCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894          269 ---DTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD  322 (398)
Q Consensus       269 ---DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD  322 (398)
                         .+.|   +....+.++.+++. ++.++.+=+    |-...|...++++||+.+=
T Consensus       136 ~~~~~~~---~~~~~~~i~~~~~~-~~~~i~~~G----GI~~~~i~~~~~~Gad~vv  184 (202)
T cd04726         136 IDAQAAG---GWWPEDDLKKVKKL-LGVKVAVAG----GITPDTLPEFKKAGADIVI  184 (202)
T ss_pred             ccccccC---CCCCHHHHHHHHhh-cCCCEEEEC----CcCHHHHHHHHhcCCCEEE
Confidence               2332   22334555555543 344565544    5556789999999999653

KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.

>PRK07315 fructose-bisphosphate aldolase; Provisional

Probab=97.40  E-value=0.029  Score=55.62  Aligned_cols=192  Identities=17%  Similarity=0.190  Sum_probs=129.1

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc---c--CCcEEEEeC--CHhhHHHHHHcCCC
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV---E--GARFPVLTP--NLKGFEAAVAAGAK  187 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~---~--~~~l~~l~~--n~~~ie~a~~~Gv~  187 (398)
                      .++.+....++++-.+.+-+.|=-.+...-++.+   ..+.+...++..   -  ++.+.....  +.+.++.|++.|++
T Consensus        25 ~~n~e~~~avi~aAe~~~sPvIlq~s~~~~~~~~---~~~~~~~~~~~~a~~~~~~vPV~lHLDH~~~~~i~~ai~~Gft  101 (293)
T PRK07315         25 TNNLEWTQAILRAAEAKKAPVLIQTSMGAAKYMG---GYKVCKNLIENLVESMGITVPVAIHLDHGHYEDALECIEVGYT  101 (293)
T ss_pred             ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcC---cHHHHHHHHHHHHHHcCCCCcEEEECCCCCHHHHHHHHHcCCC
Confidence            4678888889999999999987766543322211   122223333321   2  233333322  45678899999999


Q ss_pred             EEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC----CC-CCHHHHHHHHHHHHhCCC
Q 015894          188 EVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE----GM-VPPSKVAYVSKQLYDMGC  262 (398)
Q Consensus       188 ~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~----~r-~~~~~l~~~a~~l~~~Ga  262 (398)
                      .|.+=.+          ..+.+|.++..++++++|+..|..|.+.+-...|.++.    +. ++|+...++.    +.|+
T Consensus       102 SVm~d~S----------~l~~eEni~~t~~v~~~a~~~gv~vE~ElG~i~g~ed~~~g~s~~t~peea~~f~----~tgv  167 (293)
T PRK07315        102 SIMFDGS----------HLPVEENLKLAKEVVEKAHAKGISVEAEVGTIGGEEDGIIGKGELAPIEDAKAMV----ETGI  167 (293)
T ss_pred             EEEEcCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEecCcccCcCccccCccCCCCHHHHHHHH----HcCC
Confidence            9887433          24678999999999999999999998777665443442    22 6787765544    5799


Q ss_pred             CEEEEc--cCcCcC---CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeecc
Q 015894          263 SEISLG--DTIGVG---TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSV  325 (398)
Q Consensus       263 d~I~L~--DT~G~~---~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv  325 (398)
                      |.|.++  -.=|..   +|.-=.++++.+++..+++||.+|+-.  |....|...+++.|++-|+..-
T Consensus       168 D~LAv~iG~vHG~y~t~~k~l~~e~L~~i~~~~~~iPlVlhGGS--Gi~~e~~~~~i~~Gi~KiNv~T  233 (293)
T PRK07315        168 DFLAAGIGNIHGPYPENWEGLDLDHLEKLTEAVPGFPIVLHGGS--GIPDDQIQEAIKLGVAKVNVNT  233 (293)
T ss_pred             CEEeeccccccccCCCCCCcCCHHHHHHHHHhccCCCEEEECCC--CCCHHHHHHHHHcCCCEEEEcc
Confidence            987776  332222   232334568888888766789888864  7888999999999999776543

>PRK07084 fructose-bisphosphate aldolase; Provisional

Probab=97.40  E-value=0.026  Score=56.58  Aligned_cols=195  Identities=15%  Similarity=0.187  Sum_probs=132.3

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-c----CCcEEEEe---CCHhhHHHHHHcCC
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-E----GARFPVLT---PNLKGFEAAVAAGA  186 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~----~~~l~~l~---~n~~~ie~a~~~Gv  186 (398)
                      .+..+....++++-.+.+-+.|=-.++..-++.+. .-.+.+...++.. .    .+.+....   .+.+.+.+|+++|.
T Consensus        31 ~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~-~~~~~~~~~~~~~a~~a~~~VPV~lHLDHg~~~e~i~~ai~~Gf  109 (321)
T PRK07084         31 FNNMEQLQAIIQACVETKSPVILQVSKGARKYANA-TLLRYMAQGAVEYAKELGCPIPIVLHLDHGDSFELCKDCIDSGF  109 (321)
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEEechhHHhhCCc-hHHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCC
Confidence            46788888899999999999876655432222210 0012223332321 1    23333332   35778999999999


Q ss_pred             CEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC----C--CCCHHHHHHHHHHHHhC
Q 015894          187 KEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE----G--MVPPSKVAYVSKQLYDM  260 (398)
Q Consensus       187 ~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~----~--r~~~~~l~~~a~~l~~~  260 (398)
                      ..|.+=.|          ..+.++.++.-++++++|+..|+.|++.|-..-|.++.    .  -++|+...++++   +.
T Consensus       110 tSVMiD~S----------~lp~eeNI~~T~evv~~Ah~~GvsVEaElG~igg~ed~~~~~~~~~T~peeA~~Fv~---~T  176 (321)
T PRK07084        110 SSVMIDGS----------HLPYEENVALTKKVVEYAHQFDVTVEGELGVLAGVEDEVSAEHHTYTQPEEVEDFVK---KT  176 (321)
T ss_pred             CEEEeeCC----------CCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCccCcccccCCHHHHHHHHH---Hh
Confidence            98887433          23578999999999999999999999888876554443    1  467877777665   46


Q ss_pred             CCCEE--EEccCcCcC-------CHHHHHHHHHHHHhhCCCCeEEEEeCC-------------------ccchHHHHHHH
Q 015894          261 GCSEI--SLGDTIGVG-------TPGTVIPMLEAVLDAVPVDKLAVHFHD-------------------TYGQALSNILA  312 (398)
Q Consensus       261 Gad~I--~L~DT~G~~-------~P~~v~~lv~~l~~~~p~~~l~~H~Hn-------------------d~GlA~ANala  312 (398)
                      |+|.+  .+.-.=|.-       .|.==.++++.+++.++++||.+|+=.                   +.|..-.....
T Consensus       177 gvD~LAvaiGt~HG~Y~~~~~~~~p~Ld~d~L~~I~~~~~~vPLVLHGgSg~~~~~~~~~~~~g~~~~~~~Gi~~e~~~k  256 (321)
T PRK07084        177 GVDSLAISIGTSHGAYKFKPGQCPPPLRFDILEEIEKRIPGFPIVLHGSSSVPQEYVKTINEYGGKLKDAIGIPEEQLRK  256 (321)
T ss_pred             CCCEEeeccccccccccCCCCCCCCccCHHHHHHHHHhcCCCCEEEeCCCCCcHHHHHHHHHhcCccccCCCCCHHHHHH
Confidence            88864  333344443       243344678888888876899999877                   34888999999


Q ss_pred             HHHhCCCEEee
Q 015894          313 SLQMGISTVDS  323 (398)
Q Consensus       313 Al~aGa~~VD~  323 (398)
                      |++.|+.-|+.
T Consensus       257 ai~~GI~KINi  267 (321)
T PRK07084        257 AAKSAVCKINI  267 (321)
T ss_pred             HHHcCCceecc
Confidence            99999987654

>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4

Probab=97.37  E-value=0.0069  Score=56.65  Aligned_cols=153  Identities=24%  Similarity=0.287  Sum_probs=101.5

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEEEe-CCHhhHHHHHHcCCCEEEEec
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPVLT-PNLKGFEAAVAAGAKEVAIFA  193 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~  193 (398)
                      .+.++-+++++.|.+.|++.||+++-. |       +..+.++.++ +.|+..+.+=+ .+.++++.|+++|++.+--  
T Consensus        17 ~~~~~a~~~~~al~~gGi~~iEiT~~t-~-------~a~~~I~~l~~~~p~~~vGAGTV~~~e~a~~a~~aGA~FivS--   86 (196)
T PF01081_consen   17 DDPEDAVPIAEALIEGGIRAIEITLRT-P-------NALEAIEALRKEFPDLLVGAGTVLTAEQAEAAIAAGAQFIVS--   86 (196)
T ss_dssp             SSGGGHHHHHHHHHHTT--EEEEETTS-T-------THHHHHHHHHHHHTTSEEEEES--SHHHHHHHHHHT-SEEEE--
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCC-c-------cHHHHHHHHHHHCCCCeeEEEeccCHHHHHHHHHcCCCEEEC--
Confidence            456778999999999999999999843 2       3445666555 56887665543 6899999999999996642  


Q ss_pred             cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE--ccCc
Q 015894          194 SASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL--GDTI  271 (398)
Q Consensus       194 ~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L--~DT~  271 (398)
                         +.+               -.+++++|+++|+.+-.-.           .+|.++.    .+.++|++.+-+  ++..
T Consensus        87 ---P~~---------------~~~v~~~~~~~~i~~iPG~-----------~TptEi~----~A~~~G~~~vK~FPA~~~  133 (196)
T PF01081_consen   87 ---PGF---------------DPEVIEYAREYGIPYIPGV-----------MTPTEIM----QALEAGADIVKLFPAGAL  133 (196)
T ss_dssp             ---SS-----------------HHHHHHHHHHTSEEEEEE-----------SSHHHHH----HHHHTT-SEEEETTTTTT
T ss_pred             ---CCC---------------CHHHHHHHHHcCCcccCCc-----------CCHHHHH----HHHHCCCCEEEEecchhc
Confidence               211               1367899999999875322           3565544    355799998765  3333


Q ss_pred             CcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894          272 GVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       272 G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                      |.      ..+++.++.-+|++++-    -+-|....|.-.-+++|+..+
T Consensus       134 GG------~~~ik~l~~p~p~~~~~----ptGGV~~~N~~~~l~ag~~~v  173 (196)
T PF01081_consen  134 GG------PSYIKALRGPFPDLPFM----PTGGVNPDNLAEYLKAGAVAV  173 (196)
T ss_dssp             TH------HHHHHHHHTTTTT-EEE----EBSS--TTTHHHHHTSTTBSE
T ss_pred             Cc------HHHHHHHhccCCCCeEE----EcCCCCHHHHHHHHhCCCEEE
Confidence            31      46788888878876554    345666678888889997643

1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....

>PRK08508 biotin synthase; Provisional

Probab=97.35  E-value=0.13  Score=50.43  Aligned_cols=215  Identities=14%  Similarity=0.082  Sum_probs=132.2

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEe-cCCCCCcccCCCCHHHHHHHHHh----ccCCcEEEE-e-CCHhhHHHHHHcCCCE
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEAT-SFVSPKWVPQLADAKDVMAAIQN----VEGARFPVL-T-PNLKGFEAAVAAGAKE  188 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG-~~~~~~~~p~~~D~~~v~~~i~~----~~~~~l~~l-~-~n~~~ie~a~~~Gv~~  188 (398)
                      ++.++.++.++...+.|+..+-+. +.....   . .+.+.+.+.++.    .|++.+.+. . .+.+.++...++|++.
T Consensus        40 ~s~eeI~~~a~~a~~~g~~~~~lv~sg~~~~---~-~~~e~~~ei~~~ik~~~p~l~i~~s~G~~~~e~l~~Lk~aGld~  115 (279)
T PRK08508         40 KDIEQIVQEAKMAKANGALGFCLVTSGRGLD---D-KKLEYVAEAAKAVKKEVPGLHLIACNGTASVEQLKELKKAGIFS  115 (279)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEeccCCCC---c-ccHHHHHHHHHHHHhhCCCcEEEecCCCCCHHHHHHHHHcCCCE
Confidence            689999999999999999887652 211110   0 134444444442    245544322 2 2567888999999999


Q ss_pred             EEEeccCchHHHhhhc-CCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 015894          189 VAIFASASESFSKSNI-NCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL  267 (398)
Q Consensus       189 v~i~~~~Sd~~~~~~~-~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L  267 (398)
                      +.+-+-+++.+.+... +.++++.    .+.++.|++.|+++...++  +|.   + =++++..+.+..+.+.+.+.|-+
T Consensus       116 ~~~~lEt~~~~~~~i~~~~~~~~~----l~~i~~a~~~Gi~v~sg~I--~Gl---G-Et~ed~~~~l~~lr~L~~~svpl  185 (279)
T PRK08508        116 YNHNLETSKEFFPKICTTHTWEER----FQTCENAKEAGLGLCSGGI--FGL---G-ESWEDRISFLKSLASLSPHSTPI  185 (279)
T ss_pred             EcccccchHHHhcCCCCCCCHHHH----HHHHHHHHHcCCeecceeE--Eec---C-CCHHHHHHHHHHHHcCCCCEEee
Confidence            9886666664432221 2344444    4566778999998876666  442   1 25788999999999999885422


Q ss_pred             ------ccCc---CcCCHHHHHHHHHHHHhhCCCCeEEEEeC--CccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCC
Q 015894          268 ------GDTI---GVGTPGTVIPMLEAVLDAVPVDKLAVHFH--DTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKG  336 (398)
Q Consensus       268 ------~DT~---G~~~P~~v~~lv~~l~~~~p~~~l~~H~H--nd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~g  336 (398)
                            .+|-   ...+|.++..+++..|-.+|+..|-+=+=  ..+|   ..-..++.+||+.+  -+.++=       
T Consensus       186 ~~~~p~~~t~~~~~~~~~~~~lr~iAv~Rl~lp~~~i~~~~gr~~~~~---~~~~~~~~~g~n~~--~~g~~l-------  253 (279)
T PRK08508        186 NFFIPNPALPLKAPTLSADEALEIVRLAKEALPNARLMVAGGREVVFG---ERQYEIFEAGANAI--VIGDYL-------  253 (279)
T ss_pred             CCcCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCceeeecCChhhhch---hhHHHHHhcCCcce--eecCcc-------
Confidence                  2221   23678888899988888888755554331  1111   12356788998752  122221       


Q ss_pred             CCCCccHHHHHHHHHhCCCC
Q 015894          337 ASGNVATEDVVYMLNGLGVR  356 (398)
Q Consensus       337 raGNa~lE~vv~~L~~~Gi~  356 (398)
                      -+.+.+.++=+.+++++|+.
T Consensus       254 t~~g~~~~~d~~~~~~~~~~  273 (279)
T PRK08508        254 TTKGEAPKKDIEKLKSLGFE  273 (279)
T ss_pred             cCCCCChHHHHHHHHHcCCC
Confidence            23334556666688888875

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)

Probab=97.35  E-value=0.0093  Score=57.34  Aligned_cols=171  Identities=17%  Similarity=0.212  Sum_probs=102.1

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEecCCCCCc-----ccCCC--------CHHHHHHHHHhc---cCCcEEEEeC-CH----
Q 015894          117 PAVVKVELIKLLVSSGLAVVEATSFVSPKW-----VPQLA--------DAKDVMAAIQNV---EGARFPVLTP-NL----  175 (398)
Q Consensus       117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~-----~p~~~--------D~~~v~~~i~~~---~~~~l~~l~~-n~----  175 (398)
                      +.+.-.++++.|.++|++.||+|+|.+...     ++...        ..+..++.++.+   .++.+..|+. |.    
T Consensus        12 ~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n~~~~~   91 (242)
T cd04724          12 DLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYNPILQY   91 (242)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecCHHHHh
Confidence            557778999999999999999998765311     11000        011223333322   2445555554 53    


Q ss_pred             --h-hHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH
Q 015894          176 --K-GFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAY  252 (398)
Q Consensus       176 --~-~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~  252 (398)
                        + =++.+.++|++.+-+.+    .+            .+...+.++.+|++|+.....+.     |.   ++.+.+..
T Consensus        92 G~~~fi~~~~~aG~~giiipD----l~------------~ee~~~~~~~~~~~g~~~i~~i~-----P~---T~~~~i~~  147 (242)
T cd04724          92 GLERFLRDAKEAGVDGLIIPD----LP------------PEEAEEFREAAKEYGLDLIFLVA-----PT---TPDERIKK  147 (242)
T ss_pred             CHHHHHHHHHHCCCcEEEECC----CC------------HHHHHHHHHHHHHcCCcEEEEeC-----CC---CCHHHHHH
Confidence              2 25778899999888742    11            23566788999999998763332     21   34555555


Q ss_pred             HHHHHHhCCCCEE---EEccCcCcCC--HHHHHHHHHHHHhhCCCCeEEEEeCCccchHHH-HHHHHHHhCCCEE
Q 015894          253 VSKQLYDMGCSEI---SLGDTIGVGT--PGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALS-NILASLQMGISTV  321 (398)
Q Consensus       253 ~a~~l~~~Gad~I---~L~DT~G~~~--P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~A-NalaAl~aGa~~V  321 (398)
                      +++    ...+.|   .+.-+.|.-+  +..+.+.++.+|+. .+.+|.+    +.|.-.. ++-..+++ |+.+
T Consensus       148 i~~----~~~~~vy~~s~~g~tG~~~~~~~~~~~~i~~lr~~-~~~pI~v----ggGI~~~e~~~~~~~~-ADgv  212 (242)
T cd04724         148 IAE----LASGFIYYVSRTGVTGARTELPDDLKELIKRIRKY-TDLPIAV----GFGISTPEQAAEVAKY-ADGV  212 (242)
T ss_pred             HHh----hCCCCEEEEeCCCCCCCccCCChhHHHHHHHHHhc-CCCcEEE----EccCCCHHHHHHHHcc-CCEE
Confidence            443    233333   4455666543  57788999999985 3456665    4555544 56666666 7643

TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=97.35  E-value=0.02  Score=55.80  Aligned_cols=147  Identities=16%  Similarity=0.185  Sum_probs=93.4

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCc--cc--CC---------CCHHHHHHHHHhc----cCCcEEEEeC-CH--
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKW--VP--QL---------ADAKDVMAAIQNV----EGARFPVLTP-NL--  175 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~--~p--~~---------~D~~~v~~~i~~~----~~~~l~~l~~-n~--  175 (398)
                      -+.+.-++++..|.+.|++.||+|+|.+.+.  .|  |.         ...+.+++.++++    +++.+..|+. |.  
T Consensus        23 P~~~~~~~~~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~  102 (258)
T PRK13111         23 PDLETSLEIIKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIF  102 (258)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHh
Confidence            4677889999999999999999999876321  01  10         0223445555432    3556655553 52  


Q ss_pred             -hh----HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHH
Q 015894          176 -KG----FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKV  250 (398)
Q Consensus       176 -~~----ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l  250 (398)
                       -|    ++.+.++|++.+.+..=            .    ++.+.+.++.++++|+....-+     .|   .++.+.+
T Consensus       103 ~~G~e~f~~~~~~aGvdGviipDL------------p----~ee~~~~~~~~~~~gl~~I~lv-----ap---~t~~eri  158 (258)
T PRK13111        103 QYGVERFAADAAEAGVDGLIIPDL------------P----PEEAEELRAAAKKHGLDLIFLV-----AP---TTTDERL  158 (258)
T ss_pred             hcCHHHHHHHHHHcCCcEEEECCC------------C----HHHHHHHHHHHHHcCCcEEEEe-----CC---CCCHHHH
Confidence             13    56788999999988421            1    3566788899999999875212     12   1345555


Q ss_pred             HHHHHHHHhCCCCEEEE---ccCcCc--CCHHHHHHHHHHHHhhC
Q 015894          251 AYVSKQLYDMGCSEISL---GDTIGV--GTPGTVIPMLEAVLDAV  290 (398)
Q Consensus       251 ~~~a~~l~~~Gad~I~L---~DT~G~--~~P~~v~~lv~~l~~~~  290 (398)
                      ..+++    ....-||+   .=+.|.  ..|..+.++++.+++..
T Consensus       159 ~~i~~----~s~gfIY~vs~~GvTG~~~~~~~~~~~~i~~vk~~~  199 (258)
T PRK13111        159 KKIAS----HASGFVYYVSRAGVTGARSADAADLAELVARLKAHT  199 (258)
T ss_pred             HHHHH----hCCCcEEEEeCCCCCCcccCCCccHHHHHHHHHhcC
Confidence            55543    33334554   334444  55778999999999865

>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=97.30  E-value=0.042  Score=51.65  Aligned_cols=150  Identities=26%  Similarity=0.300  Sum_probs=106.4

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEEEe-CCHhhHHHHHHcCCCEEEEec
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPVLT-PNLKGFEAAVAAGAKEVAIFA  193 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~  193 (398)
                      .+.++-+++++.|.+.|++.||+++- .|.       ..+.++.++ +.+++.+.+=+ .+.++++.++++|++.+--  
T Consensus        13 ~~~~~a~~ia~al~~gGi~~iEit~~-tp~-------a~~~I~~l~~~~~~~~vGAGTVl~~e~a~~ai~aGA~FivS--   82 (201)
T PRK06015         13 DDVEHAVPLARALAAGGLPAIEITLR-TPA-------ALDAIRAVAAEVEEAIVGAGTILNAKQFEDAAKAGSRFIVS--   82 (201)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEeCC-Ccc-------HHHHHHHHHHHCCCCEEeeEeCcCHHHHHHHHHcCCCEEEC--
Confidence            47888899999999999999999984 232       334555554 45665555433 5889999999999996542  


Q ss_pred             cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCc
Q 015894          194 SASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGV  273 (398)
Q Consensus       194 ~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~  273 (398)
                         +.+               -.+++++|+++|+.+-.           +-.+|.++..    +.++|++.|-+      
T Consensus        83 ---P~~---------------~~~vi~~a~~~~i~~iP-----------G~~TptEi~~----A~~~Ga~~vK~------  123 (201)
T PRK06015         83 ---PGT---------------TQELLAAANDSDVPLLP-----------GAATPSEVMA----LREEGYTVLKF------  123 (201)
T ss_pred             ---CCC---------------CHHHHHHHHHcCCCEeC-----------CCCCHHHHHH----HHHCCCCEEEE------
Confidence               211               03678899999997642           3456766444    56799998766      


Q ss_pred             CCHHHH---HHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCC
Q 015894          274 GTPGTV---IPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGIS  319 (398)
Q Consensus       274 ~~P~~v---~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~  319 (398)
                       .|..+   ..+++.++.-+|++++-    -+-|....|.-.=+++|+.
T Consensus       124 -FPa~~~GG~~yikal~~plp~~~l~----ptGGV~~~n~~~~l~ag~~  167 (201)
T PRK06015        124 -FPAEQAGGAAFLKALSSPLAGTFFC----PTGGISLKNARDYLSLPNV  167 (201)
T ss_pred             -CCchhhCCHHHHHHHHhhCCCCcEE----ecCCCCHHHHHHHHhCCCe
Confidence             34322   36788888888876554    4557777898888899864

>cd00019 AP2Ec AP endonuclease family 2; These endonucleases play a role in DNA repair

Probab=97.29  E-value=0.036  Score=53.74  Aligned_cols=225  Identities=14%  Similarity=0.101  Sum_probs=121.3

Q ss_pred             HHHHHHHHhcCCCEEEEecCCCCCcccCC---CCHHHHHHHHHhccCCcEEEEeC--------C-----------HhhHH
Q 015894          122 VELIKLLVSSGLAVVEATSFVSPKWVPQL---ADAKDVMAAIQNVEGARFPVLTP--------N-----------LKGFE  179 (398)
Q Consensus       122 ~~ia~~L~~aGv~~IEvG~~~~~~~~p~~---~D~~~v~~~i~~~~~~~l~~l~~--------n-----------~~~ie  179 (398)
                      .+.++.+.++|++.||+.......+....   .+..++.+.+.+..+..+++..+        +           .+-++
T Consensus        13 ~~~l~~a~~~G~d~vEl~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~   92 (279)
T cd00019          13 ENALKRAKEIGFDTVAMFLGNPRSWLSRPLKKERAEKFKAIAEEGPSICLSVHAPYLINLASPDKEKREKSIERLKDEIE   92 (279)
T ss_pred             HHHHHHHHHcCCCEEEEEcCCCCccCCCCCCHHHHHHHHHHHHHcCCCcEEEEcCceeccCCCCHHHHHHHHHHHHHHHH
Confidence            44667778999999999753322221111   12233344443333455555432        1           01245


Q ss_pred             HHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHh
Q 015894          180 AAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYD  259 (398)
Q Consensus       180 ~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~  259 (398)
                      .|.+.|++.+.+.....+.   .......+...+.+++++++|++.|+.+.  +....+.....-.+++.+.++++.+- 
T Consensus        93 ~A~~lG~~~v~~~~g~~~~---~~~~~~~~~~~~~l~~l~~~a~~~gi~l~--lEn~~~~~~~~~~t~~~~~~li~~v~-  166 (279)
T cd00019          93 RCEELGIRLLVFHPGSYLG---QSKEEGLKRVIEALNELIDKAETKGVVIA--LETMAGQGNEIGSSFEELKEIIDLIK-  166 (279)
T ss_pred             HHHHcCCCEEEECCCCCCC---CCHHHHHHHHHHHHHHHHHhccCCCCEEE--EeCCCCCCCCCCCCHHHHHHHHHhcC-
Confidence            6777899988775543220   00011234566778888888889998765  33221111111245666666665442 


Q ss_pred             CCCCEE-EEccCc-----CcC--CHHHHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCC
Q 015894          260 MGCSEI-SLGDTI-----GVG--TPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGG  330 (398)
Q Consensus       260 ~Gad~I-~L~DT~-----G~~--~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGe  330 (398)
                       +-+.+ .+-|+.     |.-  +|++..+.++.+.+.++ +-..++|.||..+.-.         +           +.
T Consensus       167 -~~~~~g~~lD~~h~~~~g~~~~~~~~~~~~l~~~~~~i~~~~i~~vHikD~~~~~~---------~-----------~~  225 (279)
T cd00019         167 -EKPRVGVCIDTCHIFAAGYDISTVEGFEKVLEEFDKVIGLEYLKAIHLNDSKGELG---------S-----------GK  225 (279)
T ss_pred             -CCCCeEEEEEhhhHHhccCCCCCHHHHHHHHHHHHHHhChhheeEEEEEcCCCccc---------C-----------CC
Confidence             02222 223332     221  35567778887777664 2348999999765310         0           01


Q ss_pred             CCCCCCCCCCccHHHHHHHHHhCCC-CCcc---------ChHHHHHHHHHHHH
Q 015894          331 CPYAKGASGNVATEDVVYMLNGLGV-RTNV---------DIRKLMIAGDFICK  373 (398)
Q Consensus       331 cp~a~graGNa~lE~vv~~L~~~Gi-~t~i---------Dl~~L~~~~~~v~~  373 (398)
                      +=+.+-+.|..+...++..|++.|+ +-.+         +...+.+..+++++
T Consensus       226 ~~~~~~G~G~id~~~~l~~L~~~~y~~g~~~lE~~~~~~~~~~~~~~~~~~~~  278 (279)
T cd00019         226 DRHEPIGEGDIDGEELFKELKKDPYQNIPLILETPSENRDAAKIKKEIKLLRK  278 (279)
T ss_pred             ccccCCCCCCcCCHHHHHHHHhCcccCCCEEEeCCCCCccchhHHHHHHHHhc
Confidence            1112224788999999999998876 4222         23466666666543

Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of D-arabino-6-hexulose 3-phosphate to D-fructose 6-phosphate, via cleaving the phosphoesterbond with the sugar.

>TIGR00126 deoC deoxyribose-phosphate aldolase

Probab=97.29  E-value=0.022  Score=53.92  Aligned_cols=181  Identities=19%  Similarity=0.185  Sum_probs=114.9

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe--C---C-----HhhHHHHH
Q 015894          113 KNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT--P---N-----LKGFEAAV  182 (398)
Q Consensus       113 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~---n-----~~~ie~a~  182 (398)
                      +...+.++..++++.-.+.|+..+-+    +|.|+|      ...+.++ -.++++.+.+  |   .     ...++.|+
T Consensus        12 ~p~~t~~~i~~lc~~A~~~~~~avcv----~p~~v~------~a~~~l~-~~~v~v~tVigFP~G~~~~~~K~~E~~~Av   80 (211)
T TIGR00126        12 KADTTEEDIITLCAQAKTYKFAAVCV----NPSYVP------LAKELLK-GTEVRICTVVGFPLGASTTDVKLYETKEAI   80 (211)
T ss_pred             CCCCCHHHHHHHHHHHHhhCCcEEEe----CHHHHH------HHHHHcC-CCCCeEEEEeCCCCCCCcHHHHHHHHHHHH
Confidence            34678899999999999999988777    343332      1222222 1246665554  3   1     23678899


Q ss_pred             HcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCC
Q 015894          183 AAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGC  262 (398)
Q Consensus       183 ~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Ga  262 (398)
                      +.|++.|.+.+......     .-..+...+.+..+++.+.  |..+-+-+.  .     +..+.+.+...++.+.++|+
T Consensus        81 ~~GAdEiDvv~n~g~l~-----~g~~~~v~~ei~~i~~~~~--g~~lKvIlE--~-----~~L~~~ei~~a~~ia~eaGA  146 (211)
T TIGR00126        81 KYGADEVDMVINIGALK-----DGNEEVVYDDIRAVVEACA--GVLLKVIIE--T-----GLLTDEEIRKACEICIDAGA  146 (211)
T ss_pred             HcCCCEEEeecchHhhh-----CCcHHHHHHHHHHHHHHcC--CCeEEEEEe--c-----CCCCHHHHHHHHHHHHHhCC
Confidence            99999999987754321     2245667777777777764  666654232  1     23566788899999999999


Q ss_pred             CEEEEcc--CcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894          263 SEISLGD--TIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       263 d~I~L~D--T~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S  324 (398)
                      |.|--.-  +.+..+|.++..+-+.+....|. ... =+-.|+    ..+++-+++|++++-+|
T Consensus       147 DfvKTsTGf~~~gat~~dv~~m~~~v~~~v~I-Kaa-GGirt~----~~a~~~i~aGa~riGts  204 (211)
T TIGR00126       147 DFVKTSTGFGAGGATVEDVRLMRNTVGDTIGV-KAS-GGVRTA----EDAIAMIEAGASRIGAS  204 (211)
T ss_pred             CEEEeCCCCCCCCCCHHHHHHHHHHhccCCeE-EEe-CCCCCH----HHHHHHHHHhhHHhCcc
Confidence            9876542  23556788888777666543321 111 112233    55666677899887665

Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.

>PRK05926 hypothetical protein; Provisional

Probab=97.26  E-value=0.022  Score=58.26  Aligned_cols=225  Identities=15%  Similarity=0.125  Sum_probs=133.3

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEEEeC------------C-HhhH
Q 015894          113 KNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPVLTP------------N-LKGF  178 (398)
Q Consensus       113 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~------------n-~~~i  178 (398)
                      ...++.++.++.++.. +.|+..|-+-....|..  .+....++++.++ ..|++.+.++..            . .+.+
T Consensus        96 ~~~ls~eeI~~~a~~a-~~G~~ei~iv~G~~p~~--~~e~~~e~i~~Ik~~~p~i~i~a~s~~Ei~~~~~~~~~~~~e~l  172 (370)
T PRK05926         96 GWFYTPDQLVQSIKEN-PSPITETHIVAGCFPSC--NLAYYEELFSKIKQNFPDLHIKALTAIEYAYLSKLDNLPVKEVL  172 (370)
T ss_pred             cccCCHHHHHHHHHHH-hcCCCEEEEEeCcCCCC--CHHHHHHHHHHHHHhCCCeeEEECCHHHHHHHHhhcCCCHHHHH
Confidence            3568899999999988 79999887765444431  1112234455555 357777766642            1 2347


Q ss_pred             HHHHHcCCCEEEEe--ccCchHHHh-hh-cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHH
Q 015894          179 EAAVAAGAKEVAIF--ASASESFSK-SN-INCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVS  254 (398)
Q Consensus       179 e~a~~~Gv~~v~i~--~~~Sd~~~~-~~-~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a  254 (398)
                      ++..++|++.+.--  =..+|...+ .. -.++.+    .-.++++.|++.|+++...+.  +| +.+   +++..++.+
T Consensus       173 ~~LkeAGl~~~~g~GaEi~~e~~r~~~~p~~~t~~----e~l~~i~~a~~~Gi~~~sgmi--~G-~gE---t~edrv~~l  242 (370)
T PRK05926        173 QTLKIAGLDSIPGGGAEILVDEIRETLAPGRLSSQ----GFLEIHKTAHSLGIPSNATML--CY-HRE---TPEDIVTHM  242 (370)
T ss_pred             HHHHHcCcCccCCCCchhcCHHHHHhhCCCCCCHH----HHHHHHHHHHHcCCcccCceE--Ee-CCC---CHHHHHHHH
Confidence            88899999876631  111222211 11 123333    335778999999999987644  43 222   577888888


Q ss_pred             HHHHhCCCCEE-----EE-----ccCc-C-------cCCHHHHHHHHHHHH---hhCCCCeEEEEeCCccchHHHHHHHH
Q 015894          255 KQLYDMGCSEI-----SL-----GDTI-G-------VGTPGTVIPMLEAVL---DAVPVDKLAVHFHDTYGQALSNILAS  313 (398)
Q Consensus       255 ~~l~~~Gad~I-----~L-----~DT~-G-------~~~P~~v~~lv~~l~---~~~p~~~l~~H~Hnd~GlA~ANalaA  313 (398)
                      ..+.+.+.+.+     ..     .+|- |       ..++.....+++..|   .++|.+...|   +..|  ..-+..|
T Consensus       243 ~~Lr~Lq~~t~gf~~fIp~~f~~~~t~l~~~~~~~~~~~~~~~lr~~AvaRl~l~n~~~iqa~w---~~~G--~~~~q~~  317 (370)
T PRK05926        243 SKLRALQDKTSGFKNFILLKFASENNALGKRLRKMGSRHSIPPASIIAVARLFLDNFPNIKALW---NYLG--IEVALHL  317 (370)
T ss_pred             HHHHhcCCccCCeeeeEecccCCCCCcccccccccCCCChHHHHHHHHHHHHhcCCCcccccCc---hhcC--HHHHHHH
Confidence            88888765432     21     2332 1       244555444444444   3445555555   3344  4567889


Q ss_pred             HHhCCCEEeeccccCCCCCCCCCCCC-CccHHHHHHHHHhCCC
Q 015894          314 LQMGISTVDSSVSGLGGCPYAKGASG-NVATEDVVYMLNGLGV  355 (398)
Q Consensus       314 l~aGa~~VD~Sv~GlGecp~a~graG-Na~lE~vv~~L~~~Gi  355 (398)
                      +.+||+-+++|+..=--=..|+...+ -.+.+++....+..|.
T Consensus       318 L~~GanD~ggt~~~e~i~~~ag~~~~~~~~~~~~~~~i~~~g~  360 (370)
T PRK05926        318 LSCGANDLSSTHQGEKVFQMASSQEPIKMDIEGMAHLITQQGR  360 (370)
T ss_pred             HhCCCccCccccccchhhhccCCCCCCCCCHHHHHHHHHHcCC
Confidence            99999999999975321122222233 3456788777777775

>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4

Probab=97.21  E-value=0.036  Score=54.03  Aligned_cols=174  Identities=18%  Similarity=0.230  Sum_probs=102.0

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCc--ccCC-----------CCHHHHHHHHH----hccCCcEEEEeC-CH-
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKW--VPQL-----------ADAKDVMAAIQ----NVEGARFPVLTP-NL-  175 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~--~p~~-----------~D~~~v~~~i~----~~~~~~l~~l~~-n~-  175 (398)
                      .-+.+.-+++++.|.+.|+|.||+|+|.+.+.  .|..           .+.+.+++.++    +.+++.+..|+. |. 
T Consensus        20 ~P~~~~~~~~~~~l~~~GaD~iEiGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~ir~~~~~~pivlm~Y~N~i   99 (259)
T PF00290_consen   20 YPDLETTLEILKALEEAGADIIEIGIPFSDPVADGPVIQKASQRALKNGFTLEKIFELVKEIRKKEPDIPIVLMTYYNPI   99 (259)
T ss_dssp             SSSHHHHHHHHHHHHHTTBSSEEEE--SSSCTTSSHHHHHHHHHHHHTT--HHHHHHHHHHHHHHCTSSEEEEEE-HHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHhccCCCCCEEEEeeccHH
Confidence            45678889999999999999999999876321  0100           12334444443    345677777774 42 


Q ss_pred             --hh----HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHH
Q 015894          176 --KG----FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSK  249 (398)
Q Consensus       176 --~~----ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~  249 (398)
                        .|    ++.+.++|++.+-+.+-.-                +...+..+.++++|+....-++     |   .++++.
T Consensus       100 ~~~G~e~F~~~~~~aGvdGlIipDLP~----------------ee~~~~~~~~~~~gl~~I~lv~-----p---~t~~~R  155 (259)
T PF00290_consen  100 FQYGIERFFKEAKEAGVDGLIIPDLPP----------------EESEELREAAKKHGLDLIPLVA-----P---TTPEER  155 (259)
T ss_dssp             HHH-HHHHHHHHHHHTEEEEEETTSBG----------------GGHHHHHHHHHHTT-EEEEEEE-----T---TS-HHH
T ss_pred             hccchHHHHHHHHHcCCCEEEEcCCCh----------------HHHHHHHHHHHHcCCeEEEEEC-----C---CCCHHH
Confidence              24    3567789999988864321                1223556778899998653232     2   245666


Q ss_pred             HHHHHHHHHhCCCCEEEE---ccCcCcC--CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894          250 VAYVSKQLYDMGCSEISL---GDTIGVG--TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       250 l~~~a~~l~~~Gad~I~L---~DT~G~~--~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                      +..+++.    .-.-||+   .-++|.-  .|.++.++++.+|+.. +.|+.+=    +|.....-...+..|+|.|
T Consensus       156 i~~i~~~----a~gFiY~vs~~GvTG~~~~~~~~l~~~i~~ik~~~-~~Pv~vG----FGI~~~e~~~~~~~~aDGv  223 (259)
T PF00290_consen  156 IKKIAKQ----ASGFIYLVSRMGVTGSRTELPDELKEFIKRIKKHT-DLPVAVG----FGISTPEQAKKLAAGADGV  223 (259)
T ss_dssp             HHHHHHH-----SSEEEEESSSSSSSTTSSCHHHHHHHHHHHHHTT-SS-EEEE----SSS-SHHHHHHHHTTSSEE
T ss_pred             HHHHHHh----CCcEEEeeccCCCCCCcccchHHHHHHHHHHHhhc-CcceEEe----cCCCCHHHHHHHHccCCEE
Confidence            6665543    2334555   4455554  4788999999999876 3455442    3444455556666788754

2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....

>cd00945 Aldolase_Class_I Class I aldolases

Probab=97.20  E-value=0.098  Score=47.23  Aligned_cols=171  Identities=20%  Similarity=0.188  Sum_probs=105.7

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccC--CcEEEEe--CC----H----hhHHHHHH
Q 015894          117 PAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEG--ARFPVLT--PN----L----KGFEAAVA  183 (398)
Q Consensus       117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~--~~l~~l~--~n----~----~~ie~a~~  183 (398)
                      +.+.-.++++.|.+.|++.|++..              ++++.+. ..++  ..+.+-+  .+    .    +.++.+.+
T Consensus        11 d~~~~~~~~~~~~~~gv~gi~~~g--------------~~i~~~~~~~~~~~~~v~~~v~~~~~~~~~~~~~~~a~~a~~   76 (201)
T cd00945          11 TLEDIAKLCDEAIEYGFAAVCVNP--------------GYVRLAADALAGSDVPVIVVVGFPTGLTTTEVKVAEVEEAID   76 (201)
T ss_pred             CHHHHHHHHHHHHHhCCcEEEECH--------------HHHHHHHHHhCCCCCeEEEEecCCCCCCcHHHHHHHHHHHHH
Confidence            677888999999999999999974              2333333 3333  4333322  22    2    34678889


Q ss_pred             cCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 015894          184 AGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCS  263 (398)
Q Consensus       184 ~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad  263 (398)
                      .|++.+-+..+.   +..  ...+.++.++.++++++.+ +.++.+..+..     |... .+++.+.++++.+.+.|++
T Consensus        77 ~Gad~i~v~~~~---~~~--~~~~~~~~~~~~~~i~~~~-~~~~pv~iy~~-----p~~~-~~~~~~~~~~~~~~~~g~~  144 (201)
T cd00945          77 LGADEIDVVINI---GSL--KEGDWEEVLEEIAAVVEAA-DGGLPLKVILE-----TRGL-KTADEIAKAARIAAEAGAD  144 (201)
T ss_pred             cCCCEEEEeccH---HHH--hCCCHHHHHHHHHHHHHHh-cCCceEEEEEE-----CCCC-CCHHHHHHHHHHHHHhCCC
Confidence            999998886442   111  1112456666666666666 56888876555     2222 3788888888888888988


Q ss_pred             EEEEccCcCcC----CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894          264 EISLGDTIGVG----TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       264 ~I~L~DT~G~~----~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                      .|  +++.|..    ....+..+.+.+..   ..++.+-+-.+   ...+...++.+|++.+
T Consensus       145 ~i--K~~~~~~~~~~~~~~~~~i~~~~~~---~~~v~~~gg~~---~~~~~~~~~~~Ga~g~  198 (201)
T cd00945         145 FI--KTSTGFGGGGATVEDVKLMKEAVGG---RVGVKAAGGIK---TLEDALAAIEAGADGI  198 (201)
T ss_pred             EE--EeCCCCCCCCCCHHHHHHHHHhccc---CCcEEEECCCC---CHHHHHHHHHhcccee
Confidence            65  5666643    55555555444321   23444444322   3567778888898865

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>TIGR03550 F420_cofG 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofG subunit

Probab=97.20  E-value=0.047  Score=54.63  Aligned_cols=229  Identities=10%  Similarity=0.024  Sum_probs=128.5

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcc--------c--CCC-CHHHHHHHHHhcc---CCcEEEEe---CCH
Q 015894          113 KNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWV--------P--QLA-DAKDVMAAIQNVE---GARFPVLT---PNL  175 (398)
Q Consensus       113 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~--------p--~~~-D~~~v~~~i~~~~---~~~l~~l~---~n~  175 (398)
                      ...++.++.++.++.+.+.|+..+-+.+...|...        .  .+. ..+.+.+.++.+.   +. +..+.   .+.
T Consensus        32 ~~~l~~eeI~~~a~~~~~~G~~ei~l~~G~~p~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~e~~~-~~~~~~g~lt~  110 (322)
T TIGR03550        32 AALLSPEEVLEILRKGAAAGCTEALFTFGEKPEERYPEAREWLAEMGYDSTLEYLRELCELALEETGL-LPHTNPGVMSR  110 (322)
T ss_pred             cccCCHHHHHHHHHHHHHCCCCEEEEecCCCccccHHHHHHHHHhcCCccHHHHHHHHHHHHHHhcCC-ccccCCCCCCH
Confidence            34689999999999999999999888765554321        0  000 0122223333221   22 11222   256


Q ss_pred             hhHHHHHHcCCCEEEEeccCchHHHhhhcCC--CHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHH
Q 015894          176 KGFEAAVAAGAKEVAIFASASESFSKSNINC--TIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYV  253 (398)
Q Consensus       176 ~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~--s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~  253 (398)
                      +.++...++|++ +++..-+.+.......+.  ++.+..+.-.++++.|++.|+.+..+++  +|. .+   +++..++.
T Consensus       111 e~l~~Lk~aG~~-~~~~~Et~~~~l~~~~~~~~~p~k~~~~~l~~i~~a~~~Gi~~~s~~i--~G~-gE---t~ed~~~~  183 (322)
T TIGR03550       111 DELARLKPVNAS-MGLMLETTSERLCKGEAHYGSPGKDPAVRLETIEDAGRLKIPFTTGIL--IGI-GE---TREERAES  183 (322)
T ss_pred             HHHHHHHhhCCC-CCcchhhhccccccccccCCCCCCCHHHHHHHHHHHHHcCCCccceee--EeC-CC---CHHHHHHH
Confidence            678888888875 344322221111111111  1111122335888999999999887776  552 23   45666665


Q ss_pred             HHHHHhCC-----CCEEEE------ccCc----CcCCHHHHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHHHHHhC
Q 015894          254 SKQLYDMG-----CSEISL------GDTI----GVGTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILASLQMG  317 (398)
Q Consensus       254 a~~l~~~G-----ad~I~L------~DT~----G~~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANalaAl~aG  317 (398)
                      +..+.+.+     ++.+.+      +.|-    ...++.+...+++..|=.+| ...|-.-.  .+|--  ....|+.+|
T Consensus       184 l~~lr~Lq~~~~g~~~~i~~~f~P~~gTpl~~~~~~s~~e~lr~iAv~Rl~l~~~~~I~~~~--~l~~~--~~~~~L~~G  259 (322)
T TIGR03550       184 LLAIRELHERYGHIQEVIVQNFRAKPGTPMENHPEPSLEEMLRTVAVARLILPPDISIQVPP--NLNRE--DYRLLLDAG  259 (322)
T ss_pred             HHHHHHHHHHcCCCeEEecCccccCCCCCccCCCCCCHHHHHHHHHHHHHHcCCCCeeecCC--ccChH--HHHHHHhcC
Confidence            55554433     543321      2442    24567788888888877775 32222222  33311  367789999


Q ss_pred             CCEEeeccccCCCCCCCCCCCCC-ccHHHHHHHHHhCCCC
Q 015894          318 ISTVDSSVSGLGGCPYAKGASGN-VATEDVVYMLNGLGVR  356 (398)
Q Consensus       318 a~~VD~Sv~GlGecp~a~graGN-a~lE~vv~~L~~~Gi~  356 (398)
                      |+-+++|+.=.|+   +....|. .+.++++.+++..|..
T Consensus       260 and~~gt~~~~~~---~~~~~~~~~~~~~~~~~i~~~g~~  296 (322)
T TIGR03550       260 IDDWGGVSPVTPD---HVNPEAPWPEIDELARATEEAGFT  296 (322)
T ss_pred             CccccCcccCchh---hcCCCCCCCCHHHHHHHHHHcCCC
Confidence            9999999641122   0001232 4789999999998874

This model represents either a subunit or a domain, depending on whether or not the genes are fused, of a bifunctional protein that completes the synthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin, or FO. FO is the chromophore of coenzyme F(420), involved in methanogenesis in methanogenic archaea but found in certain other lineages as well. The chromophore also occurs as a cofactor in DNA photolyases in Cyanobacteria.

>PRK08185 hypothetical protein; Provisional

Probab=97.19  E-value=0.13  Score=50.93  Aligned_cols=196  Identities=14%  Similarity=0.164  Sum_probs=127.7

Q ss_pred             ccCCCCC--CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc---cCCcEEEEe---CCHhhH
Q 015894          107 DGLQNEK--NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV---EGARFPVLT---PNLKGF  178 (398)
Q Consensus       107 DG~Q~~~--~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~---~n~~~i  178 (398)
                      ++.+..+  +.++.+....++++-.+.+.+.|=-.++..-++.+    . ++...++.+   -.+.+....   .+.+.+
T Consensus        10 ~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~----~-~~~~~~~~~a~~~~vPV~lHLDHg~~~e~i   84 (283)
T PRK08185         10 EHQFAVGAFNVADSCFLRAVVEEAEANNAPAIIAIHPNELDFLG----D-NFFAYVRERAKRSPVPFVIHLDHGATIEDV   84 (283)
T ss_pred             HcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhcc----H-HHHHHHHHHHHHCCCCEEEECCCCCCHHHH
Confidence            3444443  35788888999999999999988776654333222    1 233444422   234444332   367889


Q ss_pred             HHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC-----C---CCCHHHH
Q 015894          179 EAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE-----G---MVPPSKV  250 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~-----~---r~~~~~l  250 (398)
                      +.+++.|.+.|.+=-|          ..+.++.++..++++++|+..|+.|++.+-..-+.++.     +   -++|+..
T Consensus        85 ~~ai~~Gf~SVM~D~S----------~l~~eeNi~~t~~vv~~a~~~gv~vE~ElG~vg~~e~~~~~~~~~~~~t~peea  154 (283)
T PRK08185         85 MRAIRCGFTSVMIDGS----------LLPYEENVALTKEVVELAHKVGVSVEGELGTIGNTGTSIEGGVSEIIYTDPEQA  154 (283)
T ss_pred             HHHHHcCCCEEEEeCC----------CCCHHHHHHHHHHHHHHHHHcCCeEEEEEeeccCcccccccccccccCCCHHHH
Confidence            9999999998776322          23678999999999999999999998877653222111     1   3466665


Q ss_pred             HHHHHHHHhCCCCEEEE-ccCcCcC-----CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          251 AYVSKQLYDMGCSEISL-GDTIGVG-----TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       251 ~~~a~~l~~~Gad~I~L-~DT~G~~-----~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      .++.+   +.|+|.+.+ --|++..     .|.--.++++.+++..+ +||.+|+--...  -.....|+..|+.-|+.
T Consensus       155 ~~f~~---~TgvD~LAvaiGt~HG~y~~~~kp~L~~e~l~~I~~~~~-iPLVlHGgsg~~--~e~~~~ai~~GI~KiNi  227 (283)
T PRK08185        155 EDFVS---RTGVDTLAVAIGTAHGIYPKDKKPELQMDLLKEINERVD-IPLVLHGGSANP--DAEIAESVQLGVGKINI  227 (283)
T ss_pred             HHHHH---hhCCCEEEeccCcccCCcCCCCCCCcCHHHHHHHHHhhC-CCEEEECCCCCC--HHHHHHHHHCCCeEEEe
Confidence            54443   448997666 1222222     23334667788877764 689988876655  67788899999986654

>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype

Probab=97.19  E-value=0.055  Score=54.80  Aligned_cols=199  Identities=15%  Similarity=0.157  Sum_probs=132.4

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh----ccCCcEEEEe---CCHhhHHHHHHcCCC
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN----VEGARFPVLT---PNLKGFEAAVAAGAK  187 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~----~~~~~l~~l~---~n~~~ie~a~~~Gv~  187 (398)
                      .+..+....++++-.+.+-+.|=-.++..-++.+    .+.+...++.    .+.+.+....   .+.+.+.+|+++|..
T Consensus        23 ~~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g----~~~~~~~~~~~ae~~~~VPValHLDHg~~~e~i~~Ai~~GFt   98 (347)
T TIGR01521        23 VNNMEQMRAIMEAADKTDSPVILQASRGARSYAG----APFLRHLILAAIEEYPHIPVVMHQDHGNSPATCQRAIQLGFT   98 (347)
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCC----HHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHcCCC
Confidence            5788888999999999999988776654333322    2233333332    1224444433   467889999999999


Q ss_pred             EEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCC-------CC-----------CCCCHHH
Q 015894          188 EVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCP-------VE-----------GMVPPSK  249 (398)
Q Consensus       188 ~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~-------~~-----------~r~~~~~  249 (398)
                      .|.+=.|  ... ..+...+.+|.++.-++++++|+..|+.|++.|-..-|.+       +.           .-++|+.
T Consensus        99 SVMiDgS--~l~-~~~~~~p~eENI~~Tkevve~Ah~~GvsVEaELG~igg~e~~~~g~~d~~~~~~~~~~~~~~T~Pee  175 (347)
T TIGR01521        99 SVMMDGS--LRE-DAKTPADYDYNVRVTAEVVAFAHAVGASVEGELGCLGSLETGMGEAEDGHGFEGVLDHSQLLTDPEE  175 (347)
T ss_pred             EEeecCc--CCc-ccCCCCCHHHHHHHHHHHHHHHHHcCCeEEEEeeecccccccccccccCcccccccchhhcCCCHHH
Confidence            8887333  110 1233457889999999999999999999998887754332       11           1457777


Q ss_pred             HHHHHHHHHhCCCCEE--EEccCcCcCC----H----HHHHHHHHHHHhhCCCCeEEEEeCCcc----------------
Q 015894          250 VAYVSKQLYDMGCSEI--SLGDTIGVGT----P----GTVIPMLEAVLDAVPVDKLAVHFHDTY----------------  303 (398)
Q Consensus       250 l~~~a~~l~~~Gad~I--~L~DT~G~~~----P----~~v~~lv~~l~~~~p~~~l~~H~Hnd~----------------  303 (398)
                      ..++++   +.|+|.+  .+.-.=|.-.    |    .+ .++++.+++.++++||.+|+=...                
T Consensus       176 A~~Fv~---~TgvD~LAvaiGt~HG~Yk~~~~p~~~~Ld-~~rL~eI~~~v~~vPLVLHGgSG~p~~~~~~~~~~~~~~~  251 (347)
T TIGR01521       176 AADFVK---KTKVDALAVAIGTSHGAYKFTRKPTGEVLA-IQRIEEIHARLPDTHLVMHGSSSVPQEWLDIINEYGGEIK  251 (347)
T ss_pred             HHHHHH---HHCcCEEehhcccccCCcCCCCCCChhhcC-HHHHHHHHccCCCCCEEEeCCCCCchHhhHHHHhhccccc
Confidence            666654   5688854  3333444442    4    33 345788888886679999986643                


Q ss_pred             ---chHHHHHHHHHHhCCCEEeec
Q 015894          304 ---GQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       304 ---GlA~ANalaAl~aGa~~VD~S  324 (398)
                         |.-......|++.|+.-|+..
T Consensus       252 ~~~g~p~e~i~~ai~~GI~KVNi~  275 (347)
T TIGR01521       252 ETYGVPVEEIVEGIKYGVRKVNID  275 (347)
T ss_pred             ccCCCCHHHHHHHHHCCCeeEEeC
Confidence               344788899999999877543

Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.

>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist

Probab=97.17  E-value=0.081  Score=52.18  Aligned_cols=191  Identities=17%  Similarity=0.193  Sum_probs=121.4

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-c--C-CcEEEEe---CCHhhHHHHHHcCCC
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-E--G-ARFPVLT---PNLKGFEAAVAAGAK  187 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~--~-~~l~~l~---~n~~~ie~a~~~Gv~  187 (398)
                      .++.+....++++-.+.+.+.|=..+...-++.+.   .+.+...++.+ .  + +.+....   ...+.++.+++.|++
T Consensus        23 ~~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~---~~~~~~~~~~~a~~~~~vpv~lhlDH~~~~e~i~~ai~~Gf~   99 (282)
T TIGR01859        23 FNNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGG---YKMAVAMVKTLIERMSIVPVALHLDHGSSYESCIKAIKAGFS   99 (282)
T ss_pred             ECCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCc---HHHHHHHHHHHHHHCCCCeEEEECCCCCCHHHHHHHHHcCCC
Confidence            46788888899999999999887765443232221   22333333321 1  2 3333221   246778899999999


Q ss_pred             EEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCC------CCCCCHHHHHHHHHHHHhCC
Q 015894          188 EVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPV------EGMVPPSKVAYVSKQLYDMG  261 (398)
Q Consensus       188 ~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~------~~r~~~~~l~~~a~~l~~~G  261 (398)
                      .|.+=.+          ..+.++.++..++++++|++.|..|.+.+-..-|.++      .+-++++...++.+   +.|
T Consensus       100 sVmid~s----------~l~~~eni~~t~~v~~~a~~~gv~Ve~ElG~~gg~ed~~~g~~~~~t~~eea~~f~~---~tg  166 (282)
T TIGR01859       100 SVMIDGS----------HLPFEENLALTKKVVEIAHAKGVSVEAELGTLGGIEDGVDEKEAELADPDEAEQFVK---ETG  166 (282)
T ss_pred             EEEECCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEeeCCCcCccccccccccccCCHHHHHHHHH---HHC
Confidence            8877333          2357789999999999999999988866654322222      22457777655543   358


Q ss_pred             CCEEEEc--cCcCcC--CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894          262 CSEISLG--DTIGVG--TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       262 ad~I~L~--DT~G~~--~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S  324 (398)
                      +|.+.+.  -.-|..  .|.-=.++++.+++.++ +||..|+  .-|+-..|...++++|++-|+..
T Consensus       167 vD~Lavs~Gt~hg~~~~~~~l~~e~L~~i~~~~~-iPlv~hG--gSGi~~e~i~~~i~~Gi~kiNv~  230 (282)
T TIGR01859       167 VDYLAAAIGTSHGKYKGEPGLDFERLKEIKELTN-IPLVLHG--ASGIPEEQIKKAIKLGIAKINID  230 (282)
T ss_pred             cCEEeeccCccccccCCCCccCHHHHHHHHHHhC-CCEEEEC--CCCCCHHHHHHHHHcCCCEEEEC
Confidence            9887742  111111  12222445677777664 5676665  55777889999999999977654

This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.

>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional

Probab=97.16  E-value=0.064  Score=54.36  Aligned_cols=200  Identities=15%  Similarity=0.214  Sum_probs=131.7

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh----ccCCcEEEEe---CCHhhHHHHHHcCCC
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN----VEGARFPVLT---PNLKGFEAAVAAGAK  187 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~----~~~~~l~~l~---~n~~~ie~a~~~Gv~  187 (398)
                      .+..+....++++-.+.+-+.|=-.++..-++.+    .+.+...++.    .+.+.+....   .+.+.+.+|+++|..
T Consensus        25 ~~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g----~~~~~~~v~~~ae~~~~VPVaLHLDHg~~~e~i~~Ai~~GFt  100 (347)
T PRK13399         25 VNNMEQILAIMEAAEATDSPVILQASRGARKYAG----DAMLRHMVLAAAEMYPDIPICLHQDHGNSPATCQSAIRSGFT  100 (347)
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEECCcchhhhCC----HHHHHHHHHHHHHhcCCCcEEEECCCCCCHHHHHHHHhcCCC
Confidence            5788888999999999999987776554333322    2233333332    2224444332   356788999999999


Q ss_pred             EEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCC-------C-----------CCCCCHHH
Q 015894          188 EVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCP-------V-----------EGMVPPSK  249 (398)
Q Consensus       188 ~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~-------~-----------~~r~~~~~  249 (398)
                      .|.+=.|.-+   .-+...+.+++++.-++++++|+..|+.|++.|-..-|.+       +           ..-++|+.
T Consensus       101 SVMiDgS~l~---~~~~~~~~eeNI~~Trevve~Ah~~GvsVEaELG~igg~e~~~~g~ed~~~~~~~~~~~~~~T~Pee  177 (347)
T PRK13399        101 SVMMDGSLLA---DGKTPASYDYNVDVTRRVTEMAHAVGVSVEGELGCLGSLETGEAGEEDGVGAEGKLSHDQMLTDPDQ  177 (347)
T ss_pred             EEEEeCCCCC---CCCCccCHHHHHHHHHHHHHHHHHcCCeEEEEeeeccCcccccccccCCccccccccccccCCCHHH
Confidence            8887433111   0112335789999999999999999999998886543222       2           11467877


Q ss_pred             HHHHHHHHHhCCCCEE--EEccCcCcC----CHH---HHHHHHHHHHhhCCCCeEEEEeCCc------------------
Q 015894          250 VAYVSKQLYDMGCSEI--SLGDTIGVG----TPG---TVIPMLEAVLDAVPVDKLAVHFHDT------------------  302 (398)
Q Consensus       250 l~~~a~~l~~~Gad~I--~L~DT~G~~----~P~---~v~~lv~~l~~~~p~~~l~~H~Hnd------------------  302 (398)
                      ..++++   +.|+|.+  .+.-.=|.-    .|.   ==.++++.+++.++++||.+|+=..                  
T Consensus       178 A~~Fv~---~TgvD~LAvaiGt~HG~Yk~~~~p~~~~L~~drl~eI~~~v~~vPLVLHGgSGvp~~~~~~~~~~g~~~~~  254 (347)
T PRK13399        178 AVDFVQ---RTGVDALAIAIGTSHGAYKFTRKPDGDILAIDRIEEIHARLPNTHLVMHGSSSVPQELQEIINAYGGKMKE  254 (347)
T ss_pred             HHHHHH---HHCcCEEhhhhccccCCcCCCCCCChhhccHHHHHHHHhhcCCCCEEEeCCCCCCHHHHHHHHHhcCCccc
Confidence            666655   4688854  333344443    232   2245678888888768999998664                  


Q ss_pred             -cchHHHHHHHHHHhCCCEEeec
Q 015894          303 -YGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       303 -~GlA~ANalaAl~aGa~~VD~S  324 (398)
                       +|........|++.|+.-|+..
T Consensus       255 ~~g~~~e~~~kai~~GI~KINi~  277 (347)
T PRK13399        255 TYGVPVEEIQRGIKHGVRKVNID  277 (347)
T ss_pred             cCCCCHHHHHHHHHCCCeEEEeC
Confidence             3566788999999999877543

>PRK06801 hypothetical protein; Provisional

Probab=97.14  E-value=0.083  Score=52.26  Aligned_cols=188  Identities=14%  Similarity=0.160  Sum_probs=124.6

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-c--CCcEEEEe---CCHhhHHHHHHcCCCE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-E--GARFPVLT---PNLKGFEAAVAAGAKE  188 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~--~~~l~~l~---~n~~~ie~a~~~Gv~~  188 (398)
                      .++.+....++++-.+.+.+.|=-.+...-++    ...+.+...++.+ .  .+.+....   .+.+.++.|++.|++.
T Consensus        25 ~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~----~~~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~Ai~~GftS  100 (286)
T PRK06801         25 VLDSHFLRALFAAAKQERSPFIINIAEVHFKY----ISLESLVEAVKFEAARHDIPVVLNLDHGLHFEAVVRALRLGFSS  100 (286)
T ss_pred             eCCHHHHHHHHHHHHHHCCCEEEEeCcchhhc----CCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCcE
Confidence            57888889999999999999876655433222    2334444444422 2  33333332   3577899999999999


Q ss_pred             EEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC---------CCCCHHHHHHHHHHHHh
Q 015894          189 VAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE---------GMVPPSKVAYVSKQLYD  259 (398)
Q Consensus       189 v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~---------~r~~~~~l~~~a~~l~~  259 (398)
                      |.+=.|          +.+.++.++..++++++|+.+|..|++.+-..-|.++.         .-++|+...++++   +
T Consensus       101 Vm~D~S----------~l~~eeNi~~t~~v~~~a~~~gv~VE~ElG~vgg~e~~v~~~~~~~~~~T~pe~a~~f~~---~  167 (286)
T PRK06801        101 VMFDGS----------TLEYEENVRQTREVVKMCHAVGVSVEAELGAVGGDEGGALYGEADSAKFTDPQLARDFVD---R  167 (286)
T ss_pred             EEEcCC----------CCCHHHHHHHHHHHHHHHHHcCCeEEeecCcccCCCCCcccCCcccccCCCHHHHHHHHH---H
Confidence            888332          23567899999999999999999988766653222211         1345665555443   5


Q ss_pred             CCCCEEEEccCcCcC------CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894          260 MGCSEISLGDTIGVG------TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       260 ~Gad~I~L~DT~G~~------~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S  324 (398)
                      .|+|.+.+  ++|..      .|.-=.++++.+++..+ +||.+|+=.  |....+...++++|++-|+..
T Consensus       168 tgvD~LAv--aiGt~Hg~y~~~~~l~~e~l~~i~~~~~-~PLVlHGGS--gi~~e~~~~~i~~Gi~KINv~  233 (286)
T PRK06801        168 TGIDALAV--AIGNAHGKYKGEPKLDFARLAAIHQQTG-LPLVLHGGS--GISDADFRRAIELGIHKINFY  233 (286)
T ss_pred             HCcCEEEe--ccCCCCCCCCCCCCCCHHHHHHHHHhcC-CCEEEECCC--CCCHHHHHHHHHcCCcEEEeh
Confidence            79998877  33322      12222345667776665 578888754  677889999999999988654

>TIGR02109 PQQ_syn_pqqE coenzyme PQQ biosynthesis protein E

Probab=97.13  E-value=0.26  Score=49.69  Aligned_cols=139  Identities=12%  Similarity=0.157  Sum_probs=92.5

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC----CHhhHHHHHHcCCCEE
Q 015894          114 NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP----NLKGFEAAVAAGAKEV  189 (398)
Q Consensus       114 ~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~----n~~~ie~a~~~Gv~~v  189 (398)
                      ..++.++..++++.+.+.|+..|.++. ..|-..   .|..++++.+++. +..+...+.    +.+-++...+.|++.|
T Consensus        35 ~~l~~e~~~~ii~~~~~~g~~~v~~~G-GEPll~---~~~~~ii~~~~~~-g~~~~l~TNG~ll~~e~~~~L~~~g~~~v  109 (358)
T TIGR02109        35 AELTTEEWTDVLTQAAELGVLQLHFSG-GEPLAR---PDLVELVAHARRL-GLYTNLITSGVGLTEARLDALADAGLDHV  109 (358)
T ss_pred             CCCCHHHHHHHHHHHHhcCCcEEEEeC-cccccc---ccHHHHHHHHHHc-CCeEEEEeCCccCCHHHHHHHHhCCCCEE
Confidence            358899999999999999998887753 222111   2445666666542 343333332    2345677788999999


Q ss_pred             EEeccCch--HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 015894          190 AIFASASE--SFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL  267 (398)
Q Consensus       190 ~i~~~~Sd--~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L  267 (398)
                      .|.+...+  .|.+  ++. ....++++.+.++.+++.|+.+.+.+.  +     .+.+.+++.++++.+.+.|++.+.+
T Consensus       110 ~iSldg~~~e~~d~--~rg-~~g~f~~v~~~i~~l~~~g~~v~v~~v--v-----~~~N~~~l~~~~~~~~~lg~~~i~~  179 (358)
T TIGR02109       110 QLSFQGVDEALADR--IAG-YKNAFEQKLAMARAVKAAGLPLTLNFV--I-----HRHNIDQIPEIIELAIELGADRVEL  179 (358)
T ss_pred             EEeCcCCCHHHHHH--hcC-CccHHHHHHHHHHHHHhCCCceEEEEE--e-----ccCCHHHHHHHHHHHHHcCCCEEEE
Confidence            98665432  3322  221 223567777888999999998764333  2     2456788889999999999998876

This model describes coenzyme PQQ biosynthesis protein E, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases.

>TIGR01163 rpe ribulose-phosphate 3-epimerase

Probab=97.09  E-value=0.18  Score=46.53  Aligned_cols=174  Identities=17%  Similarity=0.152  Sum_probs=99.5

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcE--EEEeCCH-hhHHHHHHcCCCEEEEe
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARF--PVLTPNL-KGFEAAVAAGAKEVAIF  192 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l--~~l~~n~-~~ie~a~~~Gv~~v~i~  192 (398)
                      .+...-.+.++.+.+.|++.||++.-.. .++|.+....+.++.+++.++..+  ..++.+. +-++.+.++|++.|.+.
T Consensus         8 ~~~~~~~~~~~~~~~~g~d~i~~~~~Dg-~~~~~~~~~~~~v~~i~~~~~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh   86 (210)
T TIGR01163         8 ADFARLGEEVKAVEEAGADWIHVDVMDG-HFVPNLTFGPPVLEALRKYTDLPIDVHLMVENPDRYIEDFAEAGADIITVH   86 (210)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEcCCCC-CCCCCcccCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEEc
Confidence            4455667899999999999999972111 111222222345556654444443  2444543 44778889999998875


Q ss_pred             ccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----c
Q 015894          193 ASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL----G  268 (398)
Q Consensus       193 ~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L----~  268 (398)
                      ....+                .....++.+|++|+.+...++     +   .++.+.+.++     ..++|.|.+    +
T Consensus        87 ~~~~~----------------~~~~~~~~~~~~g~~~~~~~~-----~---~t~~e~~~~~-----~~~~d~i~~~~~~~  137 (210)
T TIGR01163        87 PEASE----------------HIHRLLQLIKDLGAKAGIVLN-----P---ATPLEFLEYV-----LPDVDLVLLMSVNP  137 (210)
T ss_pred             cCCch----------------hHHHHHHHHHHcCCcEEEEEC-----C---CCCHHHHHHH-----HhhCCEEEEEEEcC
Confidence            43221                224556888899987653222     1   1233433333     245777655    3


Q ss_pred             cCcCcCCHHHHHHHHHHHHhhCC----CCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          269 DTIGVGTPGTVIPMLEAVLDAVP----VDKLAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       269 DT~G~~~P~~v~~lv~~l~~~~p----~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      -+.|...+....+.++.+++..+    ..++.+=    -|.-..|.-.+++.|++.|=+
T Consensus       138 g~tg~~~~~~~~~~i~~i~~~~~~~~~~~~i~v~----GGI~~env~~l~~~gad~iiv  192 (210)
T TIGR01163       138 GFGGQKFIPDTLEKIREVRKMIDENGLSILIEVD----GGVNDDNARELAEAGADILVA  192 (210)
T ss_pred             CCCcccccHHHHHHHHHHHHHHHhcCCCceEEEE----CCcCHHHHHHHHHcCCCEEEE
Confidence            33443323334455666654432    2345443    377778888889999996543

This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.

>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]

Probab=97.08  E-value=0.034  Score=54.27  Aligned_cols=155  Identities=19%  Similarity=0.182  Sum_probs=96.7

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCC-c-cc--CC---------CCHHHHHHHHHh----ccCCcEEEEeC-CH--
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPK-W-VP--QL---------ADAKDVMAAIQN----VEGARFPVLTP-NL--  175 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~-~-~p--~~---------~D~~~v~~~i~~----~~~~~l~~l~~-n~--  175 (398)
                      -+.+.-+++++.|.+.|+|.||+|+|.|.+ + .|  |.         -..+..++.++.    -+++.+..|+. |.  
T Consensus        28 P~~e~s~e~i~~L~~~GaD~iELGvPfSDPvADGP~Iq~A~~rAL~~g~t~~~~lel~~~~r~~~~~~Pivlm~Y~Npi~  107 (265)
T COG0159          28 PDLETSLEIIKTLVEAGADILELGVPFSDPVADGPTIQAAHLRALAAGVTLEDTLELVEEIRAKGVKVPIVLMTYYNPIF  107 (265)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEecCCCCCcCccCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCCCCEEEEEeccHHH
Confidence            467888999999999999999999987632 1 01  10         122344444442    24566766663 53  


Q ss_pred             -hh----HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHH
Q 015894          176 -KG----FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKV  250 (398)
Q Consensus       176 -~~----ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l  250 (398)
                       .|    ++.+.++|++.+-+.+--                ++...+..+.|+++|+.... +.    .|.   ++++.+
T Consensus       108 ~~Gie~F~~~~~~~GvdGlivpDLP----------------~ee~~~~~~~~~~~gi~~I~-lv----aPt---t~~~rl  163 (265)
T COG0159         108 NYGIEKFLRRAKEAGVDGLLVPDLP----------------PEESDELLKAAEKHGIDPIF-LV----APT---TPDERL  163 (265)
T ss_pred             HhhHHHHHHHHHHcCCCEEEeCCCC----------------hHHHHHHHHHHHHcCCcEEE-Ee----CCC---CCHHHH
Confidence             34    457889999999886431                12334566788899998652 11    232   344555


Q ss_pred             HHHHHHHHhCC-CCEEEEccCcCcCCH--HHHHHHHHHHHhhCCCCeEEE
Q 015894          251 AYVSKQLYDMG-CSEISLGDTIGVGTP--GTVIPMLEAVLDAVPVDKLAV  297 (398)
Q Consensus       251 ~~~a~~l~~~G-ad~I~L~DT~G~~~P--~~v~~lv~~l~~~~p~~~l~~  297 (398)
                      ..+++..  -| +.-+...=+.|.-.|  ..+.++++.+|+.. +.|+.+
T Consensus       164 ~~i~~~a--~GFiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~v  210 (265)
T COG0159         164 KKIAEAA--SGFIYYVSRMGVTGARNPVSADVKELVKRVRKYT-DVPVLV  210 (265)
T ss_pred             HHHHHhC--CCcEEEEecccccCCCcccchhHHHHHHHHHHhc-CCCeEE
Confidence            5554321  23 345666677788777  34899999999866 344443

>TIGR01496 DHPS dihydropteroate synthase

Probab=97.05  E-value=0.19  Score=48.86  Aligned_cols=198  Identities=20%  Similarity=0.240  Sum_probs=108.1

Q ss_pred             EEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCC-CCcccCCCCHH-H---HHHHHHhc---cCCcEEEE
Q 015894          100 IVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVS-PKWVPQLADAK-D---VMAAIQNV---EGARFPVL  171 (398)
Q Consensus       100 i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~-~~~~p~~~D~~-~---v~~~i~~~---~~~~l~~l  171 (398)
                      |+-.|. |-..--+..++.++.++.++.+.+.|.+.|++|.... |... +. +.+ |   +...++.+   .++.++.=
T Consensus         5 ilN~tp-dSF~dg~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~-~i-~~~~E~~rl~~~v~~~~~~~~~plsiD   81 (257)
T TIGR01496         5 IVNVTP-DSFSDGGRFLSVDKAVAHAERMLEEGADIIDVGGESTRPGAD-RV-SPEEELNRVVPVIKALRDQPDVPISVD   81 (257)
T ss_pred             EEeCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCC-CC-CHHHHHHHHHHHHHHHHhcCCCeEEEe
Confidence            333443 3333334457889999999999999999999985433 3321 12 233 3   33333322   25556555


Q ss_pred             eCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCC------
Q 015894          172 TPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMV------  245 (398)
Q Consensus       172 ~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~------  245 (398)
                      +.+.+-++.|++.|++.|.=....         +         ..++++.+++.|..+.  ++..-|.|.....      
T Consensus        82 T~~~~vi~~al~~G~~iINsis~~---------~---------~~~~~~l~~~~~~~vV--~m~~~g~p~~~~~~~~~~~  141 (257)
T TIGR01496        82 TYRAEVARAALEAGADIINDVSGG---------Q---------DPAMLEVAAEYGVPLV--LMHMRGTPRTMQENPHYED  141 (257)
T ss_pred             CCCHHHHHHHHHcCCCEEEECCCC---------C---------CchhHHHHHHcCCcEE--EEeCCCCCcccccCCCccc
Confidence            678889999999998866532110         0         1234556778888775  3433333322100      


Q ss_pred             ----CHHHHHHHHHHHHhCCCC--EEEEccC-cCcC-CHHHHHHHHHHHHhhC-CCCe--EEE------------EeCCc
Q 015894          246 ----PPSKVAYVSKQLYDMGCS--EISLGDT-IGVG-TPGTVIPMLEAVLDAV-PVDK--LAV------------HFHDT  302 (398)
Q Consensus       246 ----~~~~l~~~a~~l~~~Gad--~I~L~DT-~G~~-~P~~v~~lv~~l~~~~-p~~~--l~~------------H~Hnd  302 (398)
                          -.+++.+.++.+.+.|++  .|.| |. +|.. ++.+-.++++.++.-- ++.|  +++            -..+.
T Consensus       142 ~~~~~~~~~~~~i~~~~~~Gi~~~~iil-DPg~gf~ks~~~~~~~l~~i~~l~~~~~p~l~G~SrkSfig~v~~~~~~~r  220 (257)
T TIGR01496       142 VVEEVLRFLEARAEELVAAGVAAERIIL-DPGIGFGKTPEHNLELLKHLEEFVALGYPLLVGASRKSFIGALLGTPPEER  220 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHEEE-ECCCCcccCHHHHHHHHHHHHHHHhCCCcEEEEecccHHHHhhcCCChhhh
Confidence                013455666778889984  4444 44 3321 3445555555554210 2222  232            12233


Q ss_pred             cchHHHHHHHHHHhCCCEE
Q 015894          303 YGQALSNILASLQMGISTV  321 (398)
Q Consensus       303 ~GlA~ANalaAl~aGa~~V  321 (398)
                      .+..++-+..|++.||++|
T Consensus       221 ~~~t~~~~~~a~~~Ga~ii  239 (257)
T TIGR01496       221 LEGTLAASAYAVQKGADIV  239 (257)
T ss_pred             hHHHHHHHHHHHHcCCCEE
Confidence            3444555566777788765

This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.

>PRK09234 fbiC FO synthase; Reviewed

Probab=97.02  E-value=0.042  Score=61.80  Aligned_cols=226  Identities=14%  Similarity=0.098  Sum_probs=138.1

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEEEeC-------------CHhhH
Q 015894          113 KNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPVLTP-------------NLKGF  178 (398)
Q Consensus       113 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~-------------n~~~i  178 (398)
                      ...++.++.++.++...+.|+..|-+-....|+. + .....++++.++ ..|++.+.++++             ..+-+
T Consensus       554 ~y~Ls~eeI~~~a~ea~~~G~tev~i~gG~~p~~-~-~~~y~~lir~IK~~~p~i~i~afsp~Ei~~~a~~~Gl~~~e~l  631 (843)
T PRK09234        554 AYTLSLDEVADRAWEAWVAGATEVCMQGGIHPEL-P-GTGYADLVRAVKARVPSMHVHAFSPMEIVNGAARLGLSIREWL  631 (843)
T ss_pred             cccCCHHHHHHHHHHHHHCCCCEEEEecCCCCCc-C-HHHHHHHHHHHHHhCCCeeEEecChHHHHHHHHHcCCCHHHHH
Confidence            4568999999999999999999998865555532 1 111233444454 356787777654             12345


Q ss_pred             HHHHHcCCCEEEEeccCchHHHh---hhc---CCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH
Q 015894          179 EAAVAAGAKEVAIFASASESFSK---SNI---NCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAY  252 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~~Sd~~~~---~~~---~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~  252 (398)
                      ++..++|++.+.-  ..-+++..   ..+   .++.    +.-.++++.|+++|+.+...++  ||-.    -+++..++
T Consensus       632 ~~LkeAGLds~pg--t~aeil~d~vr~~i~p~k~~~----~~wle~i~~Ah~lGi~~~stmm--~G~~----Et~edrv~  699 (843)
T PRK09234        632 TALREAGLDTIPG--TAAEILDDEVRWVLTKGKLPT----AEWIEVVTTAHEVGLRSSSTMM--YGHV----DTPRHWVA  699 (843)
T ss_pred             HHHHHhCcCccCC--CchhhCCHHHHhhcCCCCCCH----HHHHHHHHHHHHcCCCcccceE--EcCC----CCHHHHHH
Confidence            7888999997752  11122211   111   1122    2235788999999999987766  5532    25788888


Q ss_pred             HHHHHHhCCCC-----EEE-----EccC----c----CcCCHHHHHHHHHHHHhhCCC--CeEEEEeCCccchHHHHHHH
Q 015894          253 VSKQLYDMGCS-----EIS-----LGDT----I----GVGTPGTVIPMLEAVLDAVPV--DKLAVHFHDTYGQALSNILA  312 (398)
Q Consensus       253 ~a~~l~~~Gad-----~I~-----L~DT----~----G~~~P~~v~~lv~~l~~~~p~--~~l~~H~Hnd~GlA~ANala  312 (398)
                      .+..+.+.+.+     .+.     -.+|    .    ...+|.+...+++..|=.+|+  .+|-.-. .++|.  .-+..
T Consensus       700 hl~~LreLq~~tgGf~~fIPl~F~~~~tpl~l~~~~~~~~t~~e~Lr~iAvaRl~Lp~~i~~Iqa~w-v~lg~--~~~q~  776 (843)
T PRK09234        700 HLRVLRDIQDRTGGFTEFVPLPFVHQNAPLYLAGAARPGPTHRENRAVHALARIMLHGRIDNIQTSW-VKLGV--EGTRA  776 (843)
T ss_pred             HHHHHHhcCcccCCeeeeeeccccCCCCCcccccCCCCCCCHHHHHHHHHHHHHhCCCCcccccchh-hhcCH--HHHHH
Confidence            88888877653     211     2233    1    236778888888887766763  1222222 34453  34578


Q ss_pred             HHHhCCCEEeeccccCCCCCCCCCCCC-CccHHHHHHHHHhCCC
Q 015894          313 SLQMGISTVDSSVSGLGGCPYAKGASG-NVATEDVVYMLNGLGV  355 (398)
Q Consensus       313 Al~aGa~~VD~Sv~GlGecp~a~graG-Na~lE~vv~~L~~~Gi  355 (398)
                      ++.+||+-+++|+..=-==+.|+...| ..+.+++....+..|.
T Consensus       777 ~L~~GaNDlgGtl~ee~i~~~aG~~~~~~~~~~~l~~~i~~aG~  820 (843)
T PRK09234        777 MLRGGANDLGGTLMEETISRMAGSEHGSAKTVAELEAIAEGAGR  820 (843)
T ss_pred             HHhcCCcCcccccccceeeeccCCCCCCCCCHHHHHHHHHHcCC
Confidence            899999988887642100112222333 3568889888887776

>PRK05835 fructose-bisphosphate aldolase; Provisional

Probab=97.01  E-value=0.14  Score=51.03  Aligned_cols=191  Identities=18%  Similarity=0.171  Sum_probs=127.4

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-cC---CcEEEEe---CCHhhHHHHHHcCCC
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-EG---ARFPVLT---PNLKGFEAAVAAGAK  187 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~~---~~l~~l~---~n~~~ie~a~~~Gv~  187 (398)
                      .+..+....++++-.+.+.+.|=-.+...-++.    ..+.+...++.. ..   +.+....   .+.+.+.+|+++|..
T Consensus        24 ~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~----g~~~~~~~~~~~a~~~~~VPValHLDHg~~~e~i~~ai~~Gft   99 (307)
T PRK05835         24 FVNFEMLNAIFEAGNEENSPLFIQASEGAIKYM----GIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFT   99 (307)
T ss_pred             ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhC----ChHHHHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHcCCC
Confidence            578888889999999999998877654433322    223333333321 22   4444433   367889999999999


Q ss_pred             EEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC--------CCCCHHHHHHHHHHHHh
Q 015894          188 EVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE--------GMVPPSKVAYVSKQLYD  259 (398)
Q Consensus       188 ~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~--------~r~~~~~l~~~a~~l~~  259 (398)
                      .|.+=.|          ..+.++.++.-++++++|+..|+.|++.|-..-|.++.        ..++|+...++++   +
T Consensus       100 SVM~DgS----------~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~~~TdPeeA~~Fv~---~  166 (307)
T PRK05835        100 SVMIDAS----------HHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVK---E  166 (307)
T ss_pred             EEEEeCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCcccccccccCCCHHHHHHHHH---h
Confidence            8887333          23567899999999999999999999888776444432        1466777666554   5


Q ss_pred             CCCCEE--EEccCcCcCC----HHHHHHHHHHHHhhCCCCeEEEEeCCccch-------------------HHHHHHHHH
Q 015894          260 MGCSEI--SLGDTIGVGT----PGTVIPMLEAVLDAVPVDKLAVHFHDTYGQ-------------------ALSNILASL  314 (398)
Q Consensus       260 ~Gad~I--~L~DT~G~~~----P~~v~~lv~~l~~~~p~~~l~~H~Hnd~Gl-------------------A~ANalaAl  314 (398)
                      .|+|.+  .+.-+=|.-.    |.==.++++.+++.+ ++||.+|+=...+-                   .+-....|+
T Consensus       167 TgvD~LAvaiGt~HG~Yk~~~~p~L~f~~L~~I~~~~-~iPLVLHGgSGip~e~~~~~~~~g~~~~~~~g~~~e~~~kai  245 (307)
T PRK05835        167 SQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKRLT-NIPLVLHGASAIPDDVRKSYLDAGGDLKGSKGVPFEFLQESV  245 (307)
T ss_pred             hCCCEEEEccCccccccCCCCCCccCHHHHHHHHHHh-CCCEEEeCCCCCchHHhhhhhhhccccccccCCCHHHHHHHH
Confidence            699963  4444444432    444455777788777 46899998654333                   344788888


Q ss_pred             HhCCCEEee
Q 015894          315 QMGISTVDS  323 (398)
Q Consensus       315 ~aGa~~VD~  323 (398)
                      ..|+.-|+.
T Consensus       246 ~~GI~KiNi  254 (307)
T PRK05835        246 KGGINKVNT  254 (307)
T ss_pred             HcCceEEEe
Confidence            888876643

>PRK09856 fructoselysine 3-epimerase; Provisional

Probab=97.01  E-value=0.08  Score=50.97  Aligned_cols=198  Identities=14%  Similarity=0.100  Sum_probs=105.4

Q ss_pred             HHHHHHHHHhcCCCEEEEecCCCCCcccCC--CCHHHHHHHHHhccCCcEEEEeC-------C-----H-----------
Q 015894          121 KVELIKLLVSSGLAVVEATSFVSPKWVPQL--ADAKDVMAAIQNVEGARFPVLTP-------N-----L-----------  175 (398)
Q Consensus       121 k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~--~D~~~v~~~i~~~~~~~l~~l~~-------n-----~-----------  175 (398)
                      -.+.++.+.++|++.||++......+.|..  .+.+++.+.+.. -++++.++.+       |     .           
T Consensus        15 l~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~l~~~~~~-~gl~v~s~~~~~~~~~~~~~~~~~~~r~~~~~~~~   93 (275)
T PRK09856         15 IEHAFRDASELGYDGIEIWGGRPHAFAPDLKAGGIKQIKALAQT-YQMPIIGYTPETNGYPYNMMLGDEHMRRESLDMIK   93 (275)
T ss_pred             HHHHHHHHHHcCCCEEEEccCCccccccccCchHHHHHHHHHHH-cCCeEEEecCcccCcCccccCCCHHHHHHHHHHHH
Confidence            456788889999999999642111111212  123334333332 2444444321       1     0           


Q ss_pred             hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCC--CCCHHHHHHH
Q 015894          176 KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEG--MVPPSKVAYV  253 (398)
Q Consensus       176 ~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~--r~~~~~l~~~  253 (398)
                      +.++.|...|++.+.+........  ....-.++...+.++++.++|++.|+.+..  ...  .|..+  ..+++.+.++
T Consensus        94 ~~i~~a~~lGa~~i~~~~~~~~~~--~~~~~~~~~~~~~l~~l~~~a~~~gv~l~i--E~~--~~~~~~~~~t~~~~~~l  167 (275)
T PRK09856         94 LAMDMAKEMNAGYTLISAAHAGYL--TPPNVIWGRLAENLSELCEYAENIGMDLIL--EPL--TPYESNVVCNANDVLHA  167 (275)
T ss_pred             HHHHHHHHhCCCEEEEcCCCCCCC--CCHHHHHHHHHHHHHHHHHHHHHcCCEEEE--ecC--CCCcccccCCHHHHHHH
Confidence            124567778999988754311000  000012455667788889999999987642  211  11111  2245665555


Q ss_pred             HHHHHhCCCC-EEEEccCcCc-CCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCC
Q 015894          254 SKQLYDMGCS-EISLGDTIGV-GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGC  331 (398)
Q Consensus       254 a~~l~~~Gad-~I~L~DT~G~-~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGec  331 (398)
                      ++   +.+-+ .-.+.|+.=. ....++.+.++.+    +.--.++|.+|..+-.                       .+
T Consensus       168 ~~---~~~~~~v~~~~D~~h~~~~~~~~~~~i~~~----~~rI~~vHi~D~~~~~-----------------------~~  217 (275)
T PRK09856        168 LA---LVPSPRLFSMVDICAPYVQAEPVMSYFDKL----GDKLRHLHIVDSDGAS-----------------------DT  217 (275)
T ss_pred             HH---HcCCCcceeEEeecchhcCCCCHHHHHHHh----CCcEEEEEEEcCCCCC-----------------------CC
Confidence            54   44432 2233477432 1223333334333    3334889999986520                       11


Q ss_pred             CCCCCCCCCccHHHHHHHHHhCCCC
Q 015894          332 PYAKGASGNVATEDVVYMLNGLGVR  356 (398)
Q Consensus       332 p~a~graGNa~lE~vv~~L~~~Gi~  356 (398)
                      ...+ +.|+.+..+++..|++.|++
T Consensus       218 ~~~p-G~G~id~~~i~~~L~~~gy~  241 (275)
T PRK09856        218 HYIP-GEGKMPLRELMRDIIDRGYE  241 (275)
T ss_pred             CcCC-CCCCCCHHHHHHHHHHcCCC
Confidence            1223 36899999999999998875

>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases

Probab=97.00  E-value=0.15  Score=50.27  Aligned_cols=190  Identities=16%  Similarity=0.204  Sum_probs=128.6

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-c--CCcEEEEe---CCHhhHHHHHHcCCCE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-E--GARFPVLT---PNLKGFEAAVAAGAKE  188 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~--~~~l~~l~---~n~~~ie~a~~~Gv~~  188 (398)
                      .+..+....++++-.+.+.+.|=-.++..-++.    ..+.+...++.. .  .+.+....   .+.+.+.+|+++|...
T Consensus        20 ~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~----~~~~~~~~~~~~a~~~~VPV~lHLDH~~~~~~i~~ai~~GftS   95 (276)
T cd00947          20 INNLETLKAILEAAEETRSPVILQISEGAIKYA----GLELLVAMVKAAAERASVPVALHLDHGSSFELIKRAIRAGFSS   95 (276)
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhC----CHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHhCCCE
Confidence            467788888999999999997665544322221    233344444322 2  33333332   3568899999999998


Q ss_pred             EEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC------CCCCHHHHHHHHHHHHhCCC
Q 015894          189 VAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE------GMVPPSKVAYVSKQLYDMGC  262 (398)
Q Consensus       189 v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~------~r~~~~~l~~~a~~l~~~Ga  262 (398)
                      |.+=.|.          .+.++.++.-++++++|+..|+.|++.+-..-|.++.      .-++|+...++++   +.|+
T Consensus        96 VMiD~S~----------l~~eeNi~~t~~vv~~ah~~gv~VEaElG~i~g~e~~~~~~~~~~T~pe~a~~Fv~---~Tgv  162 (276)
T cd00947          96 VMIDGSH----------LPFEENVAKTKEVVELAHAYGVSVEAELGRIGGEEDGVVGDEGLLTDPEEAEEFVE---ETGV  162 (276)
T ss_pred             EEeCCCC----------CCHHHHHHHHHHHHHHHHHcCCeEEEEEeeecCccCCcccccccCCCHHHHHHHHH---HHCC
Confidence            8873331          3578999999999999999999999888876554432      1467877777665   4688


Q ss_pred             CEEE--EccCcCcC---CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894          263 SEIS--LGDTIGVG---TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       263 d~I~--L~DT~G~~---~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S  324 (398)
                      |.+.  +.-+=|.-   .|.==.++++.+++.++ +||.+|+=  -|+.--....|++.|+.-|+..
T Consensus       163 D~LAvsiGt~HG~Y~~~~p~L~~~~L~~i~~~~~-vPLVlHGg--SG~~~e~~~~ai~~Gi~KiNi~  226 (276)
T cd00947         163 DALAVAIGTSHGAYKGGEPKLDFDRLKEIAERVN-VPLVLHGG--SGIPDEQIRKAIKLGVCKININ  226 (276)
T ss_pred             CEEEeccCccccccCCCCCccCHHHHHHHHHHhC-CCEEEeCC--CCCCHHHHHHHHHcCCeEEEeC
Confidence            8643  33343333   45445567888888774 67888774  5777788899999999877543

TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.

>PRK07709 fructose-bisphosphate aldolase; Provisional

Probab=96.97  E-value=0.21  Score=49.45  Aligned_cols=190  Identities=18%  Similarity=0.212  Sum_probs=128.0

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-c--C--CcEEEEe---CCHhhHHHHHHcCC
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-E--G--ARFPVLT---PNLKGFEAAVAAGA  186 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~--~--~~l~~l~---~n~~~ie~a~~~Gv  186 (398)
                      .+..+....++++-.+.+-+.|=-.++..-++.   ...+.+...++.. .  +  +.+....   .+.+.+.+|+++|.
T Consensus        25 ~~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~---~~~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~Gf  101 (285)
T PRK07709         25 MNNLEWTQAILAAAEEEKSPVILGVSEGAARHM---TGFKTVVAMVKALIEEMNITVPVAIHLDHGSSFEKCKEAIDAGF  101 (285)
T ss_pred             ECCHHHHHHHHHHHHHHCCCEEEEcCcchhhhc---CCHHHHHHHHHHHHHHcCCCCcEEEECCCCCCHHHHHHHHHcCC
Confidence            478888889999999999998776654332220   1233333344321 1  2  3333332   35688899999999


Q ss_pred             CEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC----C--CCCHHHHHHHHHHHHhC
Q 015894          187 KEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE----G--MVPPSKVAYVSKQLYDM  260 (398)
Q Consensus       187 ~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~----~--r~~~~~l~~~a~~l~~~  260 (398)
                      ..|.+=.|          ..+.+++++.-++++++|+..|+.|++.|-..-|.++.    .  -++|+...++++   +.
T Consensus       102 tSVM~DgS----------~lp~eeNi~~Trevv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~yT~peeA~~Fv~---~T  168 (285)
T PRK07709        102 TSVMIDAS----------HHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECKHLVE---AT  168 (285)
T ss_pred             CEEEEeCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCcccccccCCCHHHHHHHHH---Hh
Confidence            98887433          23568999999999999999999999888876554442    1  378887777655   46


Q ss_pred             CCCEEEE--ccCcCcC--CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          261 GCSEISL--GDTIGVG--TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       261 Gad~I~L--~DT~G~~--~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      |+|.+.+  .-.=|.-  .|.==.++++.+++.++ +||.+|+  ..|+.-.....|++.|+.-|+.
T Consensus       169 gvD~LAvaiGt~HG~Y~~~p~L~~~~L~~I~~~~~-iPLVLHG--gSG~~~e~~~~ai~~Gi~KiNi  232 (285)
T PRK07709        169 GIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTG-VPLVLHG--GTGIPTADIEKAISLGTSKINV  232 (285)
T ss_pred             CCCEEEEeecccccCcCCCCccCHHHHHHHHHHHC-CCEEEeC--CCCCCHHHHHHHHHcCCeEEEe
Confidence            9986443  3233332  24333456777777764 6788776  4677778899999999876643

>PRK06245 cofG FO synthase subunit 1; Reviewed

Probab=96.97  E-value=0.12  Score=51.89  Aligned_cols=229  Identities=12%  Similarity=0.073  Sum_probs=126.3

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCccc-----CCCC--HHHHHHHHHhc----cCC-cEEEEeC---CHhhHH
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVP-----QLAD--AKDVMAAIQNV----EGA-RFPVLTP---NLKGFE  179 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p-----~~~D--~~~v~~~i~~~----~~~-~l~~l~~---n~~~ie  179 (398)
                      .++.++.++.++.+.+.|+..|-+.....|....     .+.+  ..+..+.++++    ... .+..+..   +.+.++
T Consensus        40 ~ls~eei~~~~~~~~~~G~~ei~l~gG~~p~~~~~~~~~~~~~~g~~~~~~~i~~i~~~~~~~g~~~~~~~~~lt~e~i~  119 (336)
T PRK06245         40 LLSPEEVKEILRRGADAGCTEALFTFGEVPDESYERIKEQLAEMGYSSILEYLYDLCELALEEGLLPHTNAGILTREEME  119 (336)
T ss_pred             cCCHHHHHHHHHHHHHCCCCEEEEecCCCCccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhcCCCccccCCCCCHHHHH
Confidence            6899999999999999999998887544432110     0000  12233333321    111 1111211   345677


Q ss_pred             HHHHcCCCEEEEe-ccCchHHHhhhcCC-CHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH---HH
Q 015894          180 AAVAAGAKEVAIF-ASASESFSKSNINC-TIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAY---VS  254 (398)
Q Consensus       180 ~a~~~Gv~~v~i~-~~~Sd~~~~~~~~~-s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~---~a  254 (398)
                      ...++|+. +.+. -+.++...+.. +. .+....+...+.++.|++.|+.+...++  +|- .+   +.+...+   .+
T Consensus       120 ~Lk~ag~~-l~~~~et~~e~l~~~v-~~~~~~~~~~~~l~~i~~a~~~Gi~~~~~~i--~G~-gE---t~ed~~~~l~~l  191 (336)
T PRK06245        120 KLKEVNAS-MGLMLEQTSPRLLNTV-HRGSPGKDPELRLETIENAGKLKIPFTTGIL--IGI-GE---TWEDRAESLEAI  191 (336)
T ss_pred             HHHHhCCC-CCCCccccchhhHHhh-ccCCCCCCHHHHHHHHHHHHHcCCceeeeee--eEC-CC---CHHHHHHHHHHH
Confidence            77776654 3332 33445443311 11 1111223345778899999999876666  442 22   3444444   33


Q ss_pred             HHHH-hCC-CCEEEE------ccC----cCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894          255 KQLY-DMG-CSEISL------GDT----IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD  322 (398)
Q Consensus       255 ~~l~-~~G-ad~I~L------~DT----~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD  322 (398)
                      +.+. +.| ++.+.+      ..|    ....++.+..++++..|..+|. .+.+-.--++|.  .-...++.+||+-++
T Consensus       192 ~~l~~~~gg~~~~~~~~f~P~~~T~~~~~~~~s~~e~l~~ia~~Rl~l~~-~i~i~~~~~~~~--~~~~~~L~~Gand~~  268 (336)
T PRK06245        192 AELHERYGHIQEVIIQNFSPKPGIPMENHPEPSLEEMLRVVALARLILPP-DISIQVPPNLNR--DTGLLLLDAGADDLG  268 (336)
T ss_pred             HHHHHhhCCCcEEecCCCcCCCCCCcccCCCcCHHHHHHHHHHHHHHCCC-CceEecCCccch--HHHHHHHhcCCcccc
Confidence            3332 333 444431      122    2245668888989998888864 233222224444  334466999999999


Q ss_pred             eccccCCCCCCCCCCCCCccHHHHHHHHHhCCCC
Q 015894          323 SSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVR  356 (398)
Q Consensus       323 ~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~  356 (398)
                      +++...|+ -..+... ..++++++.+++..|..
T Consensus       269 g~~~~~~~-~~~~~~~-~~~~~~~~~~i~~~g~~  300 (336)
T PRK06245        269 GISPVTKD-YVNPEYP-WPDIEELREILEEAGWP  300 (336)
T ss_pred             CCccCCCc-eeCCCCC-CCCHHHHHHHHHHcCCC
Confidence            99886655 1111112 34789999999988763

>cd00452 KDPG_aldolase KDPG and KHG aldolase

Probab=96.95  E-value=0.15  Score=47.00  Aligned_cols=154  Identities=22%  Similarity=0.278  Sum_probs=103.2

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEE-EeCCHhhHHHHHHcCCCEEEEecc
Q 015894          117 PAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPV-LTPNLKGFEAAVAAGAKEVAIFAS  194 (398)
Q Consensus       117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~-l~~n~~~ie~a~~~Gv~~v~i~~~  194 (398)
                      +.++-.++++.|.+.|++.||+..-. +       +..+.++.++ ..++..+.+ .+.+..+++.++++|++.++.-. 
T Consensus        14 ~~~~~~~~~~~l~~~G~~~vev~~~~-~-------~~~~~i~~l~~~~~~~~iGag~v~~~~~~~~a~~~Ga~~i~~p~-   84 (190)
T cd00452          14 DAEDALALAEALIEGGIRAIEITLRT-P-------GALEAIRALRKEFPEALIGAGTVLTPEQADAAIAAGAQFIVSPG-   84 (190)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEeCCC-h-------hHHHHHHHHHHHCCCCEEEEEeCCCHHHHHHHHHcCCCEEEcCC-
Confidence            57788899999999999999998632 1       1223444444 445555554 33578899999999999997421 


Q ss_pred             CchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcC
Q 015894          195 ASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVG  274 (398)
Q Consensus       195 ~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~  274 (398)
                       ++                  .++++++++.|..+.+           +..+++++    .++.++|+|.|.+ +..   
T Consensus        85 -~~------------------~~~~~~~~~~~~~~i~-----------gv~t~~e~----~~A~~~Gad~i~~-~p~---  126 (190)
T cd00452          85 -LD------------------PEVVKAANRAGIPLLP-----------GVATPTEI----MQALELGADIVKL-FPA---  126 (190)
T ss_pred             -CC------------------HHHHHHHHHcCCcEEC-----------CcCCHHHH----HHHHHCCCCEEEE-cCC---
Confidence             11                  2567788888876541           12255553    3445799999988 432   


Q ss_pred             CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894          275 TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD  322 (398)
Q Consensus       275 ~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD  322 (398)
                      .|. -.++++.++..+|..++..=+    |.-..|....+++|++.|-
T Consensus       127 ~~~-g~~~~~~l~~~~~~~p~~a~G----GI~~~n~~~~~~~G~~~v~  169 (190)
T cd00452         127 EAV-GPAYIKALKGPFPQVRFMPTG----GVSLDNAAEWLAAGVVAVG  169 (190)
T ss_pred             ccc-CHHHHHHHHhhCCCCeEEEeC----CCCHHHHHHHHHCCCEEEE
Confidence            232 455677777777766666544    4445788899999988664

This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.

>PRK08610 fructose-bisphosphate aldolase; Reviewed

Probab=96.95  E-value=0.16  Score=50.23  Aligned_cols=190  Identities=15%  Similarity=0.188  Sum_probs=127.1

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc---cC--CcEEEEe---CCHhhHHHHHHcCC
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV---EG--ARFPVLT---PNLKGFEAAVAAGA  186 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~---~~--~~l~~l~---~n~~~ie~a~~~Gv  186 (398)
                      .+..+....++++-.+.+.+.|=-.++..-++.   ...+.+...++..   -+  +.+....   .+.+.+.+|+++|.
T Consensus        25 ~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~---~~~~~~~~~~~~~A~~~~~~vPV~lHLDHg~~~e~i~~ai~~Gf  101 (286)
T PRK08610         25 LNNLEFTQAILEASQEENAPVILGVSEGAARYM---SGFYTVVKMVEGLMHDLNITIPVAIHLDHGSSFEKCKEAIDAGF  101 (286)
T ss_pred             ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhc---CcHHHHHHHHHHHHHHcCCCCCEEEECCCCCCHHHHHHHHHcCC
Confidence            477888889999999999998776554332221   1123333334321   12  3333332   36788999999999


Q ss_pred             CEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC---C---CCCHHHHHHHHHHHHhC
Q 015894          187 KEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE---G---MVPPSKVAYVSKQLYDM  260 (398)
Q Consensus       187 ~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~---~---r~~~~~l~~~a~~l~~~  260 (398)
                      ..|.+=.|          ..+.+++++.-++++++|+..|+.|++.|-..-|.++.   .   -++|+...++++   +.
T Consensus       102 tSVM~DgS----------~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~yT~peea~~Fv~---~T  168 (286)
T PRK08610        102 TSVMIDAS----------HSPFEENVATTKKVVEYAHEKGVSVEAELGTVGGQEDDVVADGIIYADPKECQELVE---KT  168 (286)
T ss_pred             CEEEEeCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCccCCCCCcccccCCHHHHHHHHH---HH
Confidence            98887433          23578999999999999999999999888876444432   1   368888777664   56


Q ss_pred             CCCEEEE--ccCcCcC--CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          261 GCSEISL--GDTIGVG--TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       261 Gad~I~L--~DT~G~~--~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      |+|.+.+  .-.=|.-  .|.==.++++.+++.++ +||.+|+  ..|..-.....|+..|+.-|+.
T Consensus       169 gvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~-vPLVLHG--gSG~~~e~~~~ai~~GI~KiNi  232 (286)
T PRK08610        169 GIDALAPALGSVHGPYKGEPKLGFKEMEEIGLSTG-LPLVLHG--GTGIPTKDIQKAIPFGTAKINV  232 (286)
T ss_pred             CCCEEEeeccccccccCCCCCCCHHHHHHHHHHHC-CCEEEeC--CCCCCHHHHHHHHHCCCeEEEe
Confidence            8885433  2233332  24323456777777764 6888776  4677778899999999876643

>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

Probab=96.94  E-value=0.11  Score=48.58  Aligned_cols=178  Identities=21%  Similarity=0.207  Sum_probs=112.3

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe--C----C----HhhHHHHHHc
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT--P----N----LKGFEAAVAA  184 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~----n----~~~ie~a~~~  184 (398)
                      ..+.++..++++...+.|++.+-+.    |.+++      ...+.++. .++.+.+.+  |    .    ...++.|++.
T Consensus        13 ~~t~~~i~~~~~~a~~~~~~av~v~----p~~v~------~~~~~l~~-~~~~v~~~~~fp~g~~~~~~k~~eve~A~~~   81 (203)
T cd00959          13 DATEEDIRKLCDEAKEYGFAAVCVN----PCFVP------LAREALKG-SGVKVCTVIGFPLGATTTEVKVAEAREAIAD   81 (203)
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEc----HHHHH------HHHHHcCC-CCcEEEEEEecCCCCCcHHHHHHHHHHHHHc
Confidence            4578888899999999999998875    22211      11112221 234443333  2    1    1357899999


Q ss_pred             CCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE
Q 015894          185 GAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE  264 (398)
Q Consensus       185 Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~  264 (398)
                      |++.|.+.+......     .-..++.++.+.++++.|.  |..+.+-+.  .     +..+++.+...++.+.++|+|.
T Consensus        82 GAdevdvv~~~g~~~-----~~~~~~~~~ei~~v~~~~~--g~~lkvI~e--~-----~~l~~~~i~~a~ria~e~GaD~  147 (203)
T cd00959          82 GADEIDMVINIGALK-----SGDYEAVYEEIAAVVEACG--GAPLKVILE--T-----GLLTDEEIIKACEIAIEAGADF  147 (203)
T ss_pred             CCCEEEEeecHHHHh-----CCCHHHHHHHHHHHHHhcC--CCeEEEEEe--c-----CCCCHHHHHHHHHHHHHhCCCE
Confidence            999999987654221     1234667888888888775  776654222  1     2346789999999999999998


Q ss_pred             EEEc--cCcCcCCHHHHHHHHHHHHhhCCCCeEEEEe-CCccchHHHHHHHHHHhCCCEEeec
Q 015894          265 ISLG--DTIGVGTPGTVIPMLEAVLDAVPVDKLAVHF-HDTYGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       265 I~L~--DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~-Hnd~GlA~ANalaAl~aGa~~VD~S  324 (398)
                      |-..  =+.+..+|.++..+-+.++...|   |-+=+ -.|    ...++.-+++|++++-+|
T Consensus       148 IKTsTG~~~~~at~~~v~~~~~~~~~~v~---ik~aGGikt----~~~~l~~~~~g~~riG~s  203 (203)
T cd00959         148 IKTSTGFGPGGATVEDVKLMKEAVGGRVG---VKAAGGIRT----LEDALAMIEAGATRIGTS  203 (203)
T ss_pred             EEcCCCCCCCCCCHHHHHHHHHHhCCCce---EEEeCCCCC----HHHHHHHHHhChhhccCC
Confidence            8776  23345677888777777663232   22211 113    355666777799887553

DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.

>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]

Probab=96.93  E-value=0.029  Score=56.95  Aligned_cols=108  Identities=19%  Similarity=0.207  Sum_probs=78.4

Q ss_pred             eCCHhhHHHHHHcCCCEEEEecc-CchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHH
Q 015894          172 TPNLKGFEAAVAAGAKEVAIFAS-ASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKV  250 (398)
Q Consensus       172 ~~n~~~ie~a~~~Gv~~v~i~~~-~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l  250 (398)
                      ..+.+++..+++.|+|.|.+--. .+-. ..+ .+.+.++    +.+.|++|.++|.++.+.++...     .....+.+
T Consensus        13 ag~l~~l~~ai~~GADaVY~G~~~~~~R-~~a-~nfs~~~----l~e~i~~ah~~gkk~~V~~N~~~-----~~~~~~~~   81 (347)
T COG0826          13 AGNLEDLKAAIAAGADAVYIGEKEFGLR-RRA-LNFSVED----LAEAVELAHSAGKKVYVAVNTLL-----HNDELETL   81 (347)
T ss_pred             CCCHHHHHHHHHcCCCEEEeCCcccccc-ccc-ccCCHHH----HHHHHHHHHHcCCeEEEEecccc-----ccchhhHH
Confidence            34789999999999998887543 2211 111 3455555    67889999999998876666432     12234567


Q ss_pred             HHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeC
Q 015894          251 AYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFH  300 (398)
Q Consensus       251 ~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~H  300 (398)
                      .+..+.+.++|+|.|.+.|.          -++..+++..|++++++=++
T Consensus        82 ~~~l~~l~e~GvDaviv~Dp----------g~i~l~~e~~p~l~ih~S~q  121 (347)
T COG0826          82 ERYLDRLVELGVDAVIVADP----------GLIMLARERGPDLPIHVSTQ  121 (347)
T ss_pred             HHHHHHHHHcCCCEEEEcCH----------HHHHHHHHhCCCCcEEEeee
Confidence            78899999999999999994          46778888899877776444

>PTZ00413 lipoate synthase; Provisional

Probab=96.90  E-value=0.063  Score=54.95  Aligned_cols=144  Identities=17%  Similarity=0.186  Sum_probs=100.5

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHH---HHHHHh-ccCCcEEEEeC----CHhhHHHHHHcC
Q 015894          114 NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDV---MAAIQN-VEGARFPVLTP----NLKGFEAAVAAG  185 (398)
Q Consensus       114 ~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v---~~~i~~-~~~~~l~~l~~----n~~~ie~a~~~G  185 (398)
                      ..++.++..++|+...+.|++++-+++...++ ++. ..++.+   ++.+++ .|++.+.++++    +.+.++..+++|
T Consensus       175 ~~lD~eEp~~vA~av~~~Gl~~~VVTSv~RDD-L~D-~ga~~~a~~I~~Ir~~~p~~~IevligDf~g~~e~l~~L~eAG  252 (398)
T PTZ00413        175 PPLDPNEPEKVAKAVAEMGVDYIVMTMVDRDD-LPD-GGASHVARCVELIKESNPELLLEALVGDFHGDLKSVEKLANSP  252 (398)
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEEEEEcCCC-CCh-hhHHHHHHHHHHHHccCCCCeEEEcCCccccCHHHHHHHHhcC
Confidence            45799999999999999999999888865432 110 123434   444454 46788888876    567788999999


Q ss_pred             CCEEEEeccCchHHHhhhc--CCCHHHHHHHHHHHHHHHHhC---CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC
Q 015894          186 AKEVAIFASASESFSKSNI--NCTIEDSLIRYRDVALAAREL---SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM  260 (398)
Q Consensus       186 v~~v~i~~~~Sd~~~~~~~--~~s~~~~l~~~~~~v~~ak~~---G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~  260 (398)
                      ++.++-=+-+++.+....-  +-+.++.++    +++.||+.   |+.+...++  +|. -+   +.+++.++++.+.+.
T Consensus       253 ~dvynHNLETv~rLyp~VRt~~atYe~sLe----~Lr~AKe~f~~gi~tcSGiI--VGL-GE---T~eEvie~m~dLrel  322 (398)
T PTZ00413        253 LSVYAHNIECVERITPYVRDRRASYRQSLK----VLEHVKEFTNGAMLTKSSIM--LGL-GE---TEEEVRQTLRDLRTA  322 (398)
T ss_pred             CCEEecccccCHhHHHHHccCcCCHHHHHH----HHHHHHHHhcCCceEeeeeE--ecC-CC---CHHHHHHHHHHHHHc
Confidence            9998876666665543322  235665554    45667765   777765666  442 22   468899999999999


Q ss_pred             CCCEEEEcc
Q 015894          261 GCSEISLGD  269 (398)
Q Consensus       261 Gad~I~L~D  269 (398)
                      |+|.+.|.-
T Consensus       323 GVDivtIGQ  331 (398)
T PTZ00413        323 GVSAVTLGQ  331 (398)
T ss_pred             CCcEEeecc
Confidence            999998744

>PLN02428 lipoic acid synthase

Probab=96.89  E-value=0.097  Score=53.16  Aligned_cols=160  Identities=16%  Similarity=0.135  Sum_probs=105.6

Q ss_pred             cEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccC--CCCHHHHHHHHHh-ccCCcEEEEeC
Q 015894           98 VKIVEVGPRDGLQNE-KNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQ--LADAKDVMAAIQN-VEGARFPVLTP  173 (398)
Q Consensus        98 I~i~D~TLRDG~Q~~-~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~--~~D~~~v~~~i~~-~~~~~l~~l~~  173 (398)
                      +.-.+|.+-.-.... ......++..++++.+.+.|++++-+.+...+++ |.  .....++++.+++ .|++++.++.+
T Consensus       111 gCtr~CrFCav~~~~~p~~~d~~Ep~~vA~~v~~~Glk~vvltSg~rddl-~D~ga~~~~elir~Ir~~~P~i~Ie~L~p  189 (349)
T PLN02428        111 TCTRGCRFCAVKTSRTPPPPDPDEPENVAEAIASWGVDYVVLTSVDRDDL-PDGGSGHFAETVRRLKQLKPEILVEALVP  189 (349)
T ss_pred             CCCCCCCCCcCCCCCCCCCCChhhHHHHHHHHHHcCCCEEEEEEcCCCCC-CcccHHHHHHHHHHHHHhCCCcEEEEeCc
Confidence            444455444332222 2345677778999999999999988876543221 11  1123455566664 47788888876


Q ss_pred             C----HhhHHHHHHcCCCEEEEeccCchHHHhhhcC---CCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCC
Q 015894          174 N----LKGFEAAVAAGAKEVAIFASASESFSKSNIN---CTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGM  244 (398)
Q Consensus       174 n----~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~---~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r  244 (398)
                      .    .+-++...++|++.+..-.-+++... .+++   .+.++.+    ++++.|++.  |+.+..+++.  |. .+  
T Consensus       190 df~~d~elL~~L~eAG~d~i~hnlETv~rL~-~~Ir~~~~sye~~L----e~L~~ak~~~pGi~tkSg~Mv--GL-GE--  259 (349)
T PLN02428        190 DFRGDLGAVETVATSGLDVFAHNIETVERLQ-RIVRDPRAGYKQSL----DVLKHAKESKPGLLTKTSIML--GL-GE--  259 (349)
T ss_pred             cccCCHHHHHHHHHcCCCEEccCccCcHHHH-HHhcCCCCCHHHHH----HHHHHHHHhCCCCeEEEeEEE--ec-CC--
Confidence            3    45678889999999877666666543 3443   3555554    556778888  9988777774  43 12  


Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcc
Q 015894          245 VPPSKVAYVSKQLYDMGCSEISLGD  269 (398)
Q Consensus       245 ~~~~~l~~~a~~l~~~Gad~I~L~D  269 (398)
                       +.+++.+.++.+.+.|+|.+.|.=
T Consensus       260 -T~Edv~e~l~~Lrelgvd~vtigq  283 (349)
T PLN02428        260 -TDEEVVQTMEDLRAAGVDVVTFGQ  283 (349)
T ss_pred             -CHHHHHHHHHHHHHcCCCEEeecc
Confidence             578999999999999999986643

>PRK12928 lipoyl synthase; Provisional

Probab=96.89  E-value=0.025  Score=56.02  Aligned_cols=162  Identities=22%  Similarity=0.259  Sum_probs=107.5

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCC--CCHHHHHHHHHhc-cCCcEEEEeCC-----HhhHHHHHHcC
Q 015894          114 NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQL--ADAKDVMAAIQNV-EGARFPVLTPN-----LKGFEAAVAAG  185 (398)
Q Consensus       114 ~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~--~D~~~v~~~i~~~-~~~~l~~l~~n-----~~~ie~a~~~G  185 (398)
                      ..++.++.++.++.+.+.|++.|-+++...++. |..  ....++++.+++. |.+++-++.+.     .+.++...++|
T Consensus        85 ~~~~~eei~~~a~~~~~~G~keivitg~~~dDl-~d~g~~~~~ell~~Ik~~~p~~~I~~ltp~~~~~~~e~L~~l~~Ag  163 (290)
T PRK12928         85 MPLDPDEPERVAEAVAALGLRYVVLTSVARDDL-PDGGAAHFVATIAAIRARNPGTGIEVLTPDFWGGQRERLATVLAAK  163 (290)
T ss_pred             CCCCHHHHHHHHHHHHHCCCCEEEEEEEeCCcc-cccCHHHHHHHHHHHHhcCCCCEEEEeccccccCCHHHHHHHHHcC
Confidence            468999999999999999999998876443221 111  1234566666654 67888887763     34577888899


Q ss_pred             CCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCC--CcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 015894          186 AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELS--IPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCS  263 (398)
Q Consensus       186 v~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G--~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad  263 (398)
                      .+.+...+..+|...+ .++..  ...+...++++.|++.|  +.+...++  +|.   +. +.+.+.+..+.+.+.|++
T Consensus       164 ~~i~~hnlEt~~~vl~-~m~r~--~t~e~~le~l~~ak~~gp~i~~~s~iI--vG~---GE-T~ed~~etl~~Lrel~~d  234 (290)
T PRK12928        164 PDVFNHNLETVPRLQK-AVRRG--ADYQRSLDLLARAKELAPDIPTKSGLM--LGL---GE-TEDEVIETLRDLRAVGCD  234 (290)
T ss_pred             chhhcccCcCcHHHHH-HhCCC--CCHHHHHHHHHHHHHhCCCceecccEE--EeC---CC-CHHHHHHHHHHHHhcCCC
Confidence            8877765565654333 33321  22344456778899998  77776666  442   22 578888999999999999


Q ss_pred             EEEEcc----------CcCcCCHHHHHHHHHH
Q 015894          264 EISLGD----------TIGVGTPGTVIPMLEA  285 (398)
Q Consensus       264 ~I~L~D----------T~G~~~P~~v~~lv~~  285 (398)
                      .+.+.=          -..+.+|+++..+-..
T Consensus       235 ~v~i~~Yl~p~~~~~~v~~~~~~~~f~~~~~~  266 (290)
T PRK12928        235 RLTIGQYLRPSLAHLPVQRYWTPEEFEALGQI  266 (290)
T ss_pred             EEEEEcCCCCCccCCceeeccCHHHHHHHHHH
Confidence            887722          2345566666554433

>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed

Probab=96.88  E-value=0.15  Score=50.38  Aligned_cols=189  Identities=16%  Similarity=0.259  Sum_probs=125.9

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc---cCCcEEEEe---CCHhhHHHHHHcCCCE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV---EGARFPVLT---PNLKGFEAAVAAGAKE  188 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~---~n~~~ie~a~~~Gv~~  188 (398)
                      .+..+....++++-.+.+-+.|=-.++..-++    ...+.+...++..   .++.+....   .+.+.+++|+++|.+.
T Consensus        25 ~~n~e~~~avi~AAe~~~sPvIl~~~~~~~~~----~g~~~~~~~~~~~A~~~~vPV~lHLDH~~~~e~i~~Ai~~GftS  100 (283)
T PRK07998         25 TTNLETTISILNAIERSGLPNFIQIAPTNAQL----SGYDYIYEIVKRHADKMDVPVSLHLDHGKTFEDVKQAVRAGFTS  100 (283)
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEECcHhHHhh----CCHHHHHHHHHHHHHHCCCCEEEECcCCCCHHHHHHHHHcCCCE
Confidence            46778888899999999999887665432221    1233333344321   234333332   3677899999999999


Q ss_pred             EEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC------CCCCHHHHHHHHHHHHhCCC
Q 015894          189 VAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE------GMVPPSKVAYVSKQLYDMGC  262 (398)
Q Consensus       189 v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~------~r~~~~~l~~~a~~l~~~Ga  262 (398)
                      |.+=.|          ..+.+++++.-++++++|+..|+.|++.+-..-|.++.      .-++|+...++++   +.|+
T Consensus       101 VM~DgS----------~l~~eeNi~~T~~vve~Ah~~gv~VEaElG~vgg~ed~~~~~~~~~T~pe~a~~Fv~---~Tgv  167 (283)
T PRK07998        101 VMIDGA----------ALPFEENIAFTKEAVDFAKSYGVPVEAELGAILGKEDDHVSEADCKTEPEKVKDFVE---RTGC  167 (283)
T ss_pred             EEEeCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEEeccCCCccccccccccccCCHHHHHHHHH---HhCc
Confidence            888322          23677899999999999999999998888776454432      1367877666544   5688


Q ss_pred             CEEEEc--cCcCcCC-HHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          263 SEISLG--DTIGVGT-PGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       263 d~I~L~--DT~G~~~-P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      |.+-++  -.=|.-. |.-=.++++.+++..+ +||.+|+=.  |..--....|++.|+.-|+.
T Consensus       168 D~LAvaiGt~HG~Y~~p~l~~~~l~~I~~~~~-vPLVlHGgS--G~~~e~~~~ai~~Gi~KiNi  228 (283)
T PRK07998        168 DMLAVSIGNVHGLEDIPRIDIPLLKRIAEVSP-VPLVIHGGS--GIPPEILRSFVNYKVAKVNI  228 (283)
T ss_pred             CeeehhccccccCCCCCCcCHHHHHHHHhhCC-CCEEEeCCC--CCCHHHHHHHHHcCCcEEEE
Confidence            854332  2223221 4322477888887764 588888754  66677888999999986654

>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=96.88  E-value=0.065  Score=51.13  Aligned_cols=152  Identities=23%  Similarity=0.315  Sum_probs=101.7

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-----hccCCcEEEEe-CCHhhHHHHHHcCCCEE
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-----NVEGARFPVLT-PNLKGFEAAVAAGAKEV  189 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-----~~~~~~l~~l~-~n~~~ie~a~~~Gv~~v  189 (398)
                      -+.++-+++++.|.+.|++.||+++-. |       +..+.++.++     +.|+..+.+=+ .+.++++.++++|++.+
T Consensus        24 ~~~~~a~~~~~al~~gGi~~iEiT~~t-p-------~a~~~i~~l~~~~~~~~p~~~vGaGTVl~~e~a~~a~~aGA~Fi   95 (222)
T PRK07114         24 ADVEVAKKVIKACYDGGARVFEFTNRG-D-------FAHEVFAELVKYAAKELPGMILGVGSIVDAATAALYIQLGANFI   95 (222)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEeCCC-C-------cHHHHHHHHHHHHHhhCCCeEEeeEeCcCHHHHHHHHHcCCCEE
Confidence            467888999999999999999999732 2       2334444442     34555555433 68999999999999965


Q ss_pred             EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE--
Q 015894          190 AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL--  267 (398)
Q Consensus       190 ~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L--  267 (398)
                      --     +.+               -.+++++|+++|+.+-.           +-.+|.++..    +.++|++.|-+  
T Consensus        96 Vs-----P~~---------------~~~v~~~~~~~~i~~iP-----------G~~TpsEi~~----A~~~Ga~~vKlFP  140 (222)
T PRK07114         96 VT-----PLF---------------NPDIAKVCNRRKVPYSP-----------GCGSLSEIGY----AEELGCEIVKLFP  140 (222)
T ss_pred             EC-----CCC---------------CHHHHHHHHHcCCCEeC-----------CCCCHHHHHH----HHHCCCCEEEECc
Confidence            42     211               03678899999997642           3356766544    56799998655  


Q ss_pred             ccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHH--HHHHHHHHhCCCEE
Q 015894          268 GDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQAL--SNILASLQMGISTV  321 (398)
Q Consensus       268 ~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~--ANalaAl~aGa~~V  321 (398)
                      +++.|   |    .+++.++.-+|++++-    -+-|...  .|.-.=+.+|+..|
T Consensus       141 A~~~G---~----~~ikal~~p~p~i~~~----ptGGV~~~~~n~~~yl~aGa~av  185 (222)
T PRK07114        141 GSVYG---P----GFVKAIKGPMPWTKIM----PTGGVEPTEENLKKWFGAGVTCV  185 (222)
T ss_pred             ccccC---H----HHHHHHhccCCCCeEE----eCCCCCcchhcHHHHHhCCCEEE
Confidence            45433   3    4567777777765443    3446555  57777778887644

>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed

Probab=96.87  E-value=0.26  Score=48.75  Aligned_cols=189  Identities=15%  Similarity=0.170  Sum_probs=127.8

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc---cCCcEEEEe---CCHhhHHHHHHcCCCE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV---EGARFPVLT---PNLKGFEAAVAAGAKE  188 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~---~n~~~ie~a~~~Gv~~  188 (398)
                      .+..+....++++-.+.+-+.|=-.+...-++.    ..+.+...++.+   .++.+....   .+.+.+.+|+++|...
T Consensus        25 ~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~----~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GFtS  100 (286)
T PRK12738         25 IHNAETIQAILEVCSEMRSPVILAGTPGTFKHI----ALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRS  100 (286)
T ss_pred             eCCHHHHHHHHHHHHHHCCCEEEEcCcchhhhC----CHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCe
Confidence            477888888999999999998876544322211    233333444321   234444432   4678899999999998


Q ss_pred             EEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC----C----CCCHHHHHHHHHHHHhC
Q 015894          189 VAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE----G----MVPPSKVAYVSKQLYDM  260 (398)
Q Consensus       189 v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~----~----r~~~~~l~~~a~~l~~~  260 (398)
                      |.+=.|          ..+.+++++.-++++++|+..|+.|++.|-..-|.++.    .    .++|+...++++   +.
T Consensus       101 VM~DgS----------~lp~eeNi~~T~evv~~Ah~~gv~VEaElG~igg~ed~~~~~~~~~~~T~peea~~Fv~---~T  167 (286)
T PRK12738        101 AMIDGS----------HFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVE---LT  167 (286)
T ss_pred             EeecCC----------CCCHHHHHHHHHHHHHHHHHcCCeEEEEEEeeCCccCCcccccchhcCCCHHHHHHHHH---Hh
Confidence            877333          23568999999999999999999999888876444442    1    467777766654   45


Q ss_pred             CCCEEEE--ccCcCcC--CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          261 GCSEISL--GDTIGVG--TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       261 Gad~I~L--~DT~G~~--~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      |+|.+.+  .-.=|.-  .|.==.++++.+++..+ +||.+|+=  -|..--....|++.|+.-|+.
T Consensus       168 gvD~LAvaiGt~HG~Y~~~p~Ldfd~l~~I~~~~~-vPLVLHGg--SG~~~e~~~kai~~GI~KiNi  231 (286)
T PRK12738        168 GVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVD-VPLVLHGA--SDVPDEFVRRTIELGVTKVNV  231 (286)
T ss_pred             CCCEEEeccCcccCCCCCCCcCCHHHHHHHHHHhC-CCEEEeCC--CCCCHHHHHHHHHcCCeEEEe
Confidence            8886433  3233332  35445667888888774 68888775  455578889999999986643

>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate

Probab=96.86  E-value=0.061  Score=53.22  Aligned_cols=190  Identities=18%  Similarity=0.210  Sum_probs=124.4

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc---cCCcEEEE---eCCHhhHHHHHHcCCCE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV---EGARFPVL---TPNLKGFEAAVAAGAKE  188 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~---~~~~l~~l---~~n~~~ie~a~~~Gv~~  188 (398)
                      .++.+....++++-.+.+.+.|=-.++..-++.    ..+.+...++..   -++.+...   +.+.+.+++|+++|.+.
T Consensus        24 ~~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~----~~~~~~~~~~~~a~~~~vPValHLDH~~~~e~i~~ai~~GftS   99 (287)
T PF01116_consen   24 VYNLETARAVIEAAEELNSPVILQISPSEVKYM----GLEYLAAMVKAAAEEASVPVALHLDHGKDFEDIKRAIDAGFTS   99 (287)
T ss_dssp             -SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHHH----HHHHHHHHHHHHHHHSTSEEEEEEEEE-SHHHHHHHHHHTSSE
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEEcchhhhhhh----hHHHHHHHHHHHHHHcCCCEEeecccCCCHHHHHHHHHhCccc
Confidence            467888888999999999997665543221111    123333333321   24444443   24778899999999999


Q ss_pred             EEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC---------CCCCHHHHHHHHHHHHh
Q 015894          189 VAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE---------GMVPPSKVAYVSKQLYD  259 (398)
Q Consensus       189 v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~---------~r~~~~~l~~~a~~l~~  259 (398)
                      |.+=.|          ..+.+|+++.-++++++|++.|+.|++.|-..-|.++.         .-++|+...++++   +
T Consensus       100 VM~DgS----------~l~~eeNi~~T~~vv~~ah~~gv~VEaElG~i~g~ed~~~~~~~~~~~~TdP~~a~~Fv~---~  166 (287)
T PF01116_consen  100 VMIDGS----------ALPFEENIAITREVVEYAHAYGVSVEAELGHIGGKEDGIESEEETESLYTDPEEAKEFVE---E  166 (287)
T ss_dssp             EEEE-T----------TS-HHHHHHHHHHHHHHHHHTT-EEEEEESBSSSSCTTCSSSTT-TTCSSSHHHHHHHHH---H
T ss_pred             ccccCC----------cCCHHHHHHHHHHHHHhhhhhCCEEEEEeeeeeccCCCccccccccccccCHHHHHHHHH---H
Confidence            876322          23578899999999999999999999988877554432         1367877666654   6


Q ss_pred             CCCCEEEE--ccCcCcC----CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          260 MGCSEISL--GDTIGVG----TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       260 ~Gad~I~L--~DT~G~~----~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      .|+|.+.+  .-.=|.-    .|.==.++++.+++..|++||.+|+  .-|+.--....|++.|+.-|+.
T Consensus       167 TgvD~LAvaiGt~HG~y~~~~~p~Ld~~~L~~I~~~~~~iPLVlHG--gSG~~~e~~~~ai~~Gi~KiNi  234 (287)
T PF01116_consen  167 TGVDALAVAIGTAHGMYKGGKKPKLDFDRLKEIREAVPDIPLVLHG--GSGLPDEQIRKAIKNGISKINI  234 (287)
T ss_dssp             HTTSEEEE-SSSBSSSBSSSSSTC--HHHHHHHHHHHHTSEEEESS--CTTS-HHHHHHHHHTTEEEEEE
T ss_pred             hCCCEEEEecCccccccCCCCCcccCHHHHHHHHHhcCCCCEEEEC--CCCCCHHHHHHHHHcCceEEEE
Confidence            79997443  3332322    4444467788888888556888776  5677778999999999887754

There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....

>PRK15452 putative protease; Provisional

Probab=96.85  E-value=0.02  Score=59.98  Aligned_cols=112  Identities=13%  Similarity=-0.006  Sum_probs=75.1

Q ss_pred             CcEEEEeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCC
Q 015894          166 ARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMV  245 (398)
Q Consensus       166 ~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~  245 (398)
                      .++.+.+.+.+.++.|+++|+|.|.+-..--.. ....-+.+.    +.+++++++|+++|.+|-+.+....     ...
T Consensus         4 peLlapag~~e~l~aAi~~GADaVY~G~~~~~~-R~~~~~f~~----edl~eav~~ah~~g~kvyvt~n~i~-----~e~   73 (443)
T PRK15452          4 PELLSPAGTLKNMRYAFAYGADAVYAGQPRYSL-RVRNNEFNH----ENLALGINEAHALGKKFYVVVNIAP-----HNA   73 (443)
T ss_pred             cEEEEECCCHHHHHHHHHCCCCEEEECCCccch-hhhccCCCH----HHHHHHHHHHHHcCCEEEEEecCcC-----CHH
Confidence            467777889999999999999999884331110 000112333    4577889999999988765444211     112


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEE
Q 015894          246 PPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAV  297 (398)
Q Consensus       246 ~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~  297 (398)
                      +.+.+.+..+.+.+.|+|.|.+.|.          -++..+++..|+.+|+.
T Consensus        74 el~~~~~~l~~l~~~gvDgvIV~d~----------G~l~~~ke~~p~l~ih~  115 (443)
T PRK15452         74 KLKTFIRDLEPVIAMKPDALIMSDP----------GLIMMVREHFPEMPIHL  115 (443)
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEcCH----------HHHHHHHHhCCCCeEEE
Confidence            3456777788888999999999993          34566777778755533

>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed

Probab=96.83  E-value=0.19  Score=48.45  Aligned_cols=203  Identities=15%  Similarity=0.078  Sum_probs=101.2

Q ss_pred             HHHHHHHHhcCCCEEEEecCCCCC-ccc-CCC--CHHHHHHHHHhccCCcEEEEeC-----------CH-----------
Q 015894          122 VELIKLLVSSGLAVVEATSFVSPK-WVP-QLA--DAKDVMAAIQNVEGARFPVLTP-----------NL-----------  175 (398)
Q Consensus       122 ~~ia~~L~~aGv~~IEvG~~~~~~-~~p-~~~--D~~~v~~~i~~~~~~~l~~l~~-----------n~-----------  175 (398)
                      .+.++.+.++|++.||+....... ..+ .+.  +..++.+.++. .++++.+++.           +.           
T Consensus        19 ~e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gl~i~~~~~~~~~~~~~~~~d~~~r~~~~~~~~   97 (284)
T PRK13210         19 EERLVFAKELGFDFVEMSVDESDERLARLDWSKEERLSLVKAIYE-TGVRIPSMCLSGHRRFPFGSRDPATRERALEIMK   97 (284)
T ss_pred             HHHHHHHHHcCCCeEEEecCCcccccccccCCHHHHHHHHHHHHH-cCCCceEEecccccCcCCCCCCHHHHHHHHHHHH
Confidence            346667779999999997532110 000 111  12233333332 3455544321           11           


Q ss_pred             hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 015894          176 KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSK  255 (398)
Q Consensus       176 ~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~  255 (398)
                      +-++.|.+.|++.|++...  +.+.........+...+.+.++.++|++.|+.+...-.     +...-.+++.+..+++
T Consensus        98 ~~i~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~-----~~~~~~~~~~~~~l~~  170 (284)
T PRK13210         98 KAIRLAQDLGIRTIQLAGY--DVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEIM-----DTPFMNSISKWKKWDK  170 (284)
T ss_pred             HHHHHHHHhCCCEEEECCc--ccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEec-----CccccCCHHHHHHHHH
Confidence            1245667789999987421  10000000113456677788889999999987652111     1111234555555554


Q ss_pred             HHHhCCCCEEEEc-cCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCC
Q 015894          256 QLYDMGCSEISLG-DTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYA  334 (398)
Q Consensus       256 ~l~~~Gad~I~L~-DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a  334 (398)
                      .   .+-+.+.++ |+. .+.=.. .+....++. ..+--.++|.+|..+.-.         +         .-|+.-..
T Consensus       171 ~---v~~~~~~~~~D~~-h~~~~~-~~~~~~l~~-~~~~i~~vHikD~~~~~~---------~---------~~g~~~~~  226 (284)
T PRK13210        171 E---IDSPWLTVYPDVG-NLSAWG-NDVWSELKL-GIDHIAAIHLKDTYAVTE---------T---------SKGQFRDV  226 (284)
T ss_pred             H---cCCCceeEEecCC-hhhhcC-CCHHHHHHH-hcCeEEEEEecccccccc---------C---------CCCccccc
Confidence            3   354555554 542 111000 012223322 333348999999754210         0         00110111


Q ss_pred             CCCCCCccHHHHHHHHHhCCCC
Q 015894          335 KGASGNVATEDVVYMLNGLGVR  356 (398)
Q Consensus       335 ~graGNa~lE~vv~~L~~~Gi~  356 (398)
                      +-+.|+.+...++.+|+..|++
T Consensus       227 p~G~G~id~~~~~~~L~~~gy~  248 (284)
T PRK13210        227 PFGEGCVDFVGIFKTLKELNYR  248 (284)
T ss_pred             cCCCcccCHHHHHHHHHHcCCC
Confidence            1137899999999999987765

>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed

Probab=96.82  E-value=0.24  Score=48.99  Aligned_cols=189  Identities=15%  Similarity=0.202  Sum_probs=127.3

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-c--CCcEEEEe---CCHhhHHHHHHcCCCE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-E--GARFPVLT---PNLKGFEAAVAAGAKE  188 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~--~~~l~~l~---~n~~~ie~a~~~Gv~~  188 (398)
                      .++.+....++++-.+.+-+.|=-.++..-++.    ..+.+...++.. .  .+.+....   .+.+.+.+|+++|...
T Consensus        25 v~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~----g~~~~~~~~~~~A~~~~VPValHLDH~~~~e~i~~ai~~GftS  100 (284)
T PRK12857         25 CNNMEIVQAIVAAAEAEKSPVIIQASQGAIKYA----GIEYISAMVRTAAEKASVPVALHLDHGTDFEQVMKCIRNGFTS  100 (284)
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEEechhHhhhC----CHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCe
Confidence            467888888999999999998776654332222    123333333321 2  33333332   3667899999999998


Q ss_pred             EEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC---C-----CCCHHHHHHHHHHHHhC
Q 015894          189 VAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE---G-----MVPPSKVAYVSKQLYDM  260 (398)
Q Consensus       189 v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~---~-----r~~~~~l~~~a~~l~~~  260 (398)
                      |.+=.|          ..+.+|+++.-++++++|+..|+.|++.|-..-|.++.   .     -++|+...++++   +.
T Consensus       101 VM~DgS----------~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~vgg~e~~~~~~~~~~~~T~pe~a~~Fv~---~T  167 (284)
T PRK12857        101 VMIDGS----------KLPLEENIALTKKVVEIAHAVGVSVEAELGKIGGTEDDITVDEREAAMTDPEEARRFVE---ET  167 (284)
T ss_pred             EEEeCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEEeeecCCccCCCCcccchhhcCCHHHHHHHHH---HH
Confidence            877333          13568999999999999999999999888876554432   1     367777666654   56


Q ss_pred             CCCEEEE--ccCcCcC--CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          261 GCSEISL--GDTIGVG--TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       261 Gad~I~L--~DT~G~~--~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      |+|.+.+  .-.=|.-  .|.==.++++.+++.++ +||.+|+=  -|+.-.....|++.|+.-|+.
T Consensus       168 gvD~LAvaiGt~HG~y~~~p~Ld~~~L~~i~~~~~-vPLVlHGg--SG~~~e~~~~ai~~Gi~KiNi  231 (284)
T PRK12857        168 GVDALAIAIGTAHGPYKGEPKLDFDRLAKIKELVN-IPIVLHGS--SGVPDEAIRKAISLGVRKVNI  231 (284)
T ss_pred             CCCEEeeccCccccccCCCCcCCHHHHHHHHHHhC-CCEEEeCC--CCCCHHHHHHHHHcCCeEEEe
Confidence            8885433  3333332  35444567788887764 57887774  577788899999999986654

>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=96.81  E-value=0.26  Score=47.80  Aligned_cols=182  Identities=11%  Similarity=0.001  Sum_probs=116.5

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCC---CCCcccCCCCHHHHHHHHH---hccCCcEEEEeCCHhhHHHHHHcCCCEE
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFV---SPKWVPQLADAKDVMAAIQ---NVEGARFPVLTPNLKGFEAAVAAGAKEV  189 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~---~~~~~p~~~D~~~v~~~i~---~~~~~~l~~l~~n~~~ie~a~~~Gv~~v  189 (398)
                      =+.++..++++.+.++|+..+--|+|-   +|...-.+ ..+ -++.++   +-.+..+..=+.+..+++.+.+ .+|.+
T Consensus        26 Es~e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~-G~~-gl~~L~~~~~~~Gl~~~Tev~d~~~v~~~~e-~vdil  102 (250)
T PRK13397         26 ESYDHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGL-GLQ-GIRYLHEVCQEFGLLSVSEIMSERQLEEAYD-YLDVI  102 (250)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCC-CHH-HHHHHHHHHHHcCCCEEEeeCCHHHHHHHHh-cCCEE
Confidence            377888999999999999999999874   22211111 112 233333   2234544444457788888888 69988


Q ss_pred             EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcc
Q 015894          190 AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGD  269 (398)
Q Consensus       190 ~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~D  269 (398)
                      .|-...          +..       .++++++.+.|..|.  +..      ....+++++...++.+.+.|.+.|.|+-
T Consensus       103 qIgs~~----------~~n-------~~LL~~va~tgkPVi--lk~------G~~~t~~e~~~A~e~i~~~Gn~~i~L~e  157 (250)
T PRK13397        103 QVGARN----------MQN-------FEFLKTLSHIDKPIL--FKR------GLMATIEEYLGALSYLQDTGKSNIILCE  157 (250)
T ss_pred             EECccc----------ccC-------HHHHHHHHccCCeEE--EeC------CCCCCHHHHHHHHHHHHHcCCCeEEEEc
Confidence            885331          111       244556666788875  331      1146899999999999999999898886


Q ss_pred             --CcCcCCHHH-HH--HHHHHHHhhCCCCeEEE---EeCCccchHHHHHHHHHHhCCC--EEeeccc
Q 015894          270 --TIGVGTPGT-VI--PMLEAVLDAVPVDKLAV---HFHDTYGQALSNILASLQMGIS--TVDSSVS  326 (398)
Q Consensus       270 --T~G~~~P~~-v~--~lv~~l~~~~p~~~l~~---H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~  326 (398)
                        +.|+-+|.+ +.  .-+..+++.+. .||.+   |.=-.+-+..+-+++|+.+||+  +|+.-..
T Consensus       158 Rg~~~Y~~~~~n~~dl~ai~~lk~~~~-lPVivd~SHs~G~r~~v~~~a~AAvA~GAdGl~IE~H~~  223 (250)
T PRK13397        158 RGVRGYDVETRNMLDIMAVPIIQQKTD-LPIIVDVSHSTGRRDLLLPAAKIAKAVGANGIMMEVHPD  223 (250)
T ss_pred             cccCCCCCccccccCHHHHHHHHHHhC-CCeEECCCCCCcccchHHHHHHHHHHhCCCEEEEEecCC
Confidence              444444432 22  33556666553 45434   5433444566889999999999  8876554

>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=96.81  E-value=0.25  Score=48.88  Aligned_cols=198  Identities=15%  Similarity=0.158  Sum_probs=131.4

Q ss_pred             ccCCCCC--CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-c--CCcEEEEe---CCHhhH
Q 015894          107 DGLQNEK--NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-E--GARFPVLT---PNLKGF  178 (398)
Q Consensus       107 DG~Q~~~--~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~--~~~l~~l~---~n~~~i  178 (398)
                      ++.+..+  +.+..+....++++-.+.+.+.|=-.++..-++.+    .+.+...++.. .  ++.+....   .+.+.+
T Consensus        15 ~~~yaV~AfN~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g----~~~~~~~~~~~a~~~~VPValHLDH~~~~e~i   90 (284)
T PRK12737         15 AEGYAVPAFNIHNLETLQVVVETAAELRSPVILAGTPGTFSYAG----TDYIVAIAEVAARKYNIPLALHLDHHEDLDDI   90 (284)
T ss_pred             HcCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCC----HHHHHHHHHHHHHHCCCCEEEECCCCCCHHHH
Confidence            3444443  35788888899999999999987665543322221    23333334321 2  33333332   356789


Q ss_pred             HHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC--------CCCCHHHH
Q 015894          179 EAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE--------GMVPPSKV  250 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~--------~r~~~~~l  250 (398)
                      .+|+++|...|.+=.|          ..+.+++++.-++++++|+..|+.|++.|-..-|.++.        .-++|+..
T Consensus        91 ~~ai~~GftSVMiDgS----------~lp~eeNi~~T~~vv~~Ah~~gvsVEaElG~igg~e~~~~~~~~~~~~T~peeA  160 (284)
T PRK12737         91 KKKVRAGIRSVMIDGS----------HLSFEENIAIVKEVVEFCHRYDASVEAELGRLGGQEDDLVVDEKDAMYTNPDAA  160 (284)
T ss_pred             HHHHHcCCCeEEecCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHH
Confidence            9999999998876332          23578999999999999999999999888876555442        14688877


Q ss_pred             HHHHHHHHhCCCCEEEEc--cCcCcC--CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894          251 AYVSKQLYDMGCSEISLG--DTIGVG--TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       251 ~~~a~~l~~~Gad~I~L~--DT~G~~--~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S  324 (398)
                      .++++   +.|+|.+.++  -.=|.-  .|.==.++++.+++..+ +||.+|+  .-|..--....|++.|+.-|+..
T Consensus       161 ~~Fv~---~TgvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~-iPLVlHG--gSG~~~e~~~kai~~Gi~KiNi~  232 (284)
T PRK12737        161 AEFVE---RTGIDSLAVAIGTAHGLYKGEPKLDFERLAEIREKVS-IPLVLHG--ASGVPDEDVKKAISLGICKVNVA  232 (284)
T ss_pred             HHHHH---HhCCCEEeeccCccccccCCCCcCCHHHHHHHHHHhC-CCEEEeC--CCCCCHHHHHHHHHCCCeEEEeC
Confidence            77665   4689864433  233332  34333456777877664 5787776  55666788999999999877653

>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family

Probab=96.79  E-value=0.29  Score=48.35  Aligned_cols=189  Identities=15%  Similarity=0.157  Sum_probs=127.9

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-c--CCcEEEEe---CCHhhHHHHHHcCCCE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-E--GARFPVLT---PNLKGFEAAVAAGAKE  188 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~--~~~l~~l~---~n~~~ie~a~~~Gv~~  188 (398)
                      .++.+....++++-.+.+.+.|=-.++..-++.    ..+.+...++.+ .  ++.+....   .+.+.+.+|+++|...
T Consensus        23 ~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~----~~~~~~~~~~~~a~~~~VPValHLDHg~~~e~i~~ai~~GFtS   98 (282)
T TIGR01858        23 IHNLETIQAVVETAAEMRSPVILAGTPGTFKHA----GTEYIVALCSAASTTYNMPLALHLDHHESLDDIRQKVHAGVRS   98 (282)
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEEeCccHHhhC----CHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCE
Confidence            578888889999999999998776654332221    234444444422 2  33333332   3678899999999998


Q ss_pred             EEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC--------CCCCHHHHHHHHHHHHhC
Q 015894          189 VAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE--------GMVPPSKVAYVSKQLYDM  260 (398)
Q Consensus       189 v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~--------~r~~~~~l~~~a~~l~~~  260 (398)
                      |.+=.|          ..+.+++++.-++++++|+..|+.|++.|-..-|.++.        .-++|+...++++   +.
T Consensus        99 VM~DgS----------~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~---~T  165 (282)
T TIGR01858        99 AMIDGS----------HFPFAQNVKLVKEVVDFCHRQDCSVEAELGRLGGVEDDLSVDEEDALYTDPQEAKEFVE---AT  165 (282)
T ss_pred             EeecCC----------CCCHHHHHHHHHHHHHHHHHcCCeEEEEEEecCCccCCCccccchhccCCHHHHHHHHH---HH
Confidence            887333          13568999999999999999999999888876454442        1467777666644   67


Q ss_pred             CCCEEEE--ccCcCcC--CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          261 GCSEISL--GDTIGVG--TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       261 Gad~I~L--~DT~G~~--~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      |+|.+.+  .-+=|.-  .|.==.++++.+++.++ +||.+|+=  -|+.--....|+..|+.-|+.
T Consensus       166 gvD~LAvaiGt~HG~yk~~p~Ldf~~L~~I~~~~~-iPLVlHGg--SG~~~e~~~~ai~~Gi~KiNi  229 (282)
T TIGR01858       166 GVDSLAVAIGTAHGLYKKTPKLDFDRLAEIREVVD-VPLVLHGA--SDVPDEDVRRTIELGICKVNV  229 (282)
T ss_pred             CcCEEecccCccccCcCCCCccCHHHHHHHHHHhC-CCeEEecC--CCCCHHHHHHHHHcCCeEEEe
Confidence            9986433  2233322  24334457778887774 57888774  566678889999999986654

This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.

>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]

Probab=96.79  E-value=0.11  Score=48.47  Aligned_cols=180  Identities=18%  Similarity=0.226  Sum_probs=114.9

Q ss_pred             HHHHHHhcCCCEEEE----ecCCCCCcccCCCCHHHHHHHHHhccC----CcEEEEeCCHhh-HHHHHHcCCCEEEEecc
Q 015894          124 LIKLLVSSGLAVVEA----TSFVSPKWVPQLADAKDVMAAIQNVEG----ARFPVLTPNLKG-FEAAVAAGAKEVAIFAS  194 (398)
Q Consensus       124 ia~~L~~aGv~~IEv----G~~~~~~~~p~~~D~~~v~~~i~~~~~----~~l~~l~~n~~~-ie~a~~~Gv~~v~i~~~  194 (398)
                      =.+.|.++|.+.+-+    |.|+     |.+.--.-+.+.+|+..+    ...-+++.|.++ ++..+.+|++.+.+.+-
T Consensus        22 e~~~~l~~GadwlHlDVMDg~FV-----pNiT~G~pvV~slR~~~~~~~ffD~HmMV~~Peq~V~~~a~agas~~tfH~E   96 (224)
T KOG3111|consen   22 ECKKMLDAGADWLHLDVMDGHFV-----PNITFGPPVVESLRKHTGADPFFDVHMMVENPEQWVDQMAKAGASLFTFHYE   96 (224)
T ss_pred             HHHHHHHcCCCeEEEeeeccccc-----CCcccchHHHHHHHhccCCCcceeEEEeecCHHHHHHHHHhcCcceEEEEEe
Confidence            456788999997766    3444     333322346777775422    344566777655 68888999998777543


Q ss_pred             CchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCc---
Q 015894          195 ASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTI---  271 (398)
Q Consensus       195 ~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~---  271 (398)
                      +                -+...++++++|+.|..+...|-     |   -++.+.+...+.     .+|.+ |.=|+   
T Consensus        97 ~----------------~q~~~~lv~~ir~~Gmk~G~alk-----P---gT~Ve~~~~~~~-----~~D~v-LvMtVePG  146 (224)
T KOG3111|consen   97 A----------------TQKPAELVEKIREKGMKVGLALK-----P---GTPVEDLEPLAE-----HVDMV-LVMTVEPG  146 (224)
T ss_pred             e----------------ccCHHHHHHHHHHcCCeeeEEeC-----C---CCcHHHHHHhhc-----cccEE-EEEEecCC
Confidence            2                22345778999999999875444     2   246677666654     22221 11122   


Q ss_pred             --CcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHH
Q 015894          272 --GVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYM  349 (398)
Q Consensus       272 --G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~  349 (398)
                        |.-.-+++-.-|+.+|+++|.+.|++    |-|++..|+-.+.+|||+.+=+.-.=          -|-.+-.+++..
T Consensus       147 FGGQkFme~mm~KV~~lR~kyp~l~iev----DGGv~~~ti~~~a~AGAN~iVaGsav----------f~a~d~~~vi~~  212 (224)
T KOG3111|consen  147 FGGQKFMEDMMPKVEWLREKYPNLDIEV----DGGVGPSTIDKAAEAGANMIVAGSAV----------FGAADPSDVISL  212 (224)
T ss_pred             CchhhhHHHHHHHHHHHHHhCCCceEEe----cCCcCcchHHHHHHcCCCEEEeccee----------ecCCCHHHHHHH
Confidence              22223556667899999999877776    67999999999999999966332221          223455677766


Q ss_pred             HHh
Q 015894          350 LNG  352 (398)
Q Consensus       350 L~~  352 (398)
                      |+.
T Consensus       213 lr~  215 (224)
T KOG3111|consen  213 LRN  215 (224)
T ss_pred             HHH
Confidence            654

>PRK00507 deoxyribose-phosphate aldolase; Provisional

Probab=96.79  E-value=0.18  Score=48.00  Aligned_cols=180  Identities=17%  Similarity=0.136  Sum_probs=110.6

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe--C---C-----HhhHHHHHH
Q 015894          114 NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT--P---N-----LKGFEAAVA  183 (398)
Q Consensus       114 ~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~---n-----~~~ie~a~~  183 (398)
                      -..+.++..++++.-.+.|+..+-+-    |.|+|      ...+.++ -.++++.+.+  |   +     ....+.|++
T Consensus        17 p~~t~~~i~~~~~~A~~~~~~avcv~----p~~v~------~a~~~l~-~~~v~v~tVigFP~G~~~~~~K~~e~~~Ai~   85 (221)
T PRK00507         17 PEATEEDIDKLCDEAKEYGFASVCVN----PSYVK------LAAELLK-GSDVKVCTVIGFPLGANTTAVKAFEAKDAIA   85 (221)
T ss_pred             CCCCHHHHHHHHHHHHHhCCeEEEEC----HHHHH------HHHHHhC-CCCCeEEEEecccCCCChHHHHHHHHHHHHH
Confidence            36788888999999999999887774    33332      1122222 1245665544  2   2     135678899


Q ss_pred             cCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 015894          184 AGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCS  263 (398)
Q Consensus       184 ~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad  263 (398)
                      .|+++|.+.+..+-..    - -..++..+.+..+.+.+  .+..+-+-+.       ....+.+.+.++++.+.++|+|
T Consensus        86 ~GA~EiD~Vin~~~~~----~-g~~~~v~~ei~~v~~~~--~~~~lKvIlE-------t~~L~~e~i~~a~~~~~~agad  151 (221)
T PRK00507         86 NGADEIDMVINIGALK----S-GDWDAVEADIRAVVEAA--GGAVLKVIIE-------TCLLTDEEKVKACEIAKEAGAD  151 (221)
T ss_pred             cCCceEeeeccHHHhc----C-CCHHHHHHHHHHHHHhc--CCceEEEEee-------cCcCCHHHHHHHHHHHHHhCCC
Confidence            9999999988766431    1 13556666665555544  3544443232       2235678889999999999999


Q ss_pred             EEEEccCc--CcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894          264 EISLGDTI--GVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       264 ~I~L~DT~--G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S  324 (398)
                      .|--.-+.  |..+|+.++.+.+.+...+     .+..==-. .....++.-+++||++|-+|
T Consensus       152 fIKTsTG~~~~gat~~~v~~m~~~~~~~~-----~IKasGGI-rt~~~a~~~i~aGA~riGtS  208 (221)
T PRK00507        152 FVKTSTGFSTGGATVEDVKLMRETVGPRV-----GVKASGGI-RTLEDALAMIEAGATRLGTS  208 (221)
T ss_pred             EEEcCCCCCCCCCCHHHHHHHHHHhCCCc-----eEEeeCCc-CCHHHHHHHHHcCcceEccC
Confidence            55554443  4466777776665554333     22221100 01466777889999998776

>TIGR00167 cbbA ketose-bisphosphate aldolases

Probab=96.78  E-value=0.27  Score=48.72  Aligned_cols=190  Identities=18%  Similarity=0.176  Sum_probs=126.8

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc---c--CCcEEEEe---CCHhhHHHHHHcCC
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV---E--GARFPVLT---PNLKGFEAAVAAGA  186 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~---~--~~~l~~l~---~n~~~ie~a~~~Gv  186 (398)
                      .++.+....++++-.+.+-+.|=-.+...-++.   ...+.+...++..   .  ++.+....   .+.+.+.+|+++|.
T Consensus        25 ~~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~---~g~~~~~~~~~~~a~~~~~~VPV~lHLDHg~~~e~i~~ai~~Gf  101 (288)
T TIGR00167        25 INNLETINAVLEAAAEEKSPVIIQFSNGAAKYI---AGLGAISAMVKAMSEAYPYGVPVALHLDHGASEEDCAQAVKAGF  101 (288)
T ss_pred             ECCHHHHHHHHHHHHHHCCCEEEECCcchhhcc---CCHHHHHHHHHHHHHhccCCCcEEEECCCCCCHHHHHHHHHcCC
Confidence            467888889999999999998776554332221   1233444444421   2  33333332   46788999999999


Q ss_pred             CEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC--------CCCCHHHHHHHHHHHH
Q 015894          187 KEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE--------GMVPPSKVAYVSKQLY  258 (398)
Q Consensus       187 ~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~--------~r~~~~~l~~~a~~l~  258 (398)
                      ..|.+=.|          ..+.+++++.-++++++|+..|+.|++.|-..-|.++.        ..++|+...+++   .
T Consensus       102 tSVMiDgS----------~lp~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv---~  168 (288)
T TIGR00167       102 SSVMIDGS----------HEPFEENIELTKKVVERAHKMGVSVEAELGTLGGEEDGVSVADESALYTDPEEAKEFV---K  168 (288)
T ss_pred             CEEEecCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCcccccccccCCCHHHHHHHH---h
Confidence            98887333          13568999999999999999999999888876554442        146777655554   3


Q ss_pred             hCCCCEEEE--ccCcCcC--CHH-HHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          259 DMGCSEISL--GDTIGVG--TPG-TVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       259 ~~Gad~I~L--~DT~G~~--~P~-~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      +.|+|.+.+  .-.=|.-  .|. ==.++++.+++.++ +||.+|+=  -|+.-.....|++.|+.-|+.
T Consensus       169 ~TgvD~LAvaiGt~HG~y~~~p~~Ld~~~L~~I~~~v~-vPLVlHGg--SG~~~e~~~~ai~~Gi~KiNi  235 (288)
T TIGR00167       169 LTGVDSLAAAIGNVHGVYKGEPKGLDFERLEEIQKYVN-LPLVLHGG--SGIPDEEIKKAISLGVVKVNI  235 (288)
T ss_pred             ccCCcEEeeccCccccccCCCCCccCHHHHHHHHHHhC-CCEEEeCC--CCCCHHHHHHHHHcCCeEEEc
Confidence            568886543  3333333  243 22356777777764 57888875  477778899999999876643

fructose-bisphosphate and tagatose-bisphosphate aldolase.

>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]

Probab=96.76  E-value=0.34  Score=48.97  Aligned_cols=222  Identities=15%  Similarity=0.076  Sum_probs=146.1

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhcc---CCcEEE-Ee-CCHhhHHHHHHcCCCE
Q 015894          114 NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVE---GARFPV-LT-PNLKGFEAAVAAGAKE  188 (398)
Q Consensus       114 ~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~---~~~l~~-l~-~n~~~ie~a~~~Gv~~  188 (398)
                      +.++.++.++-|+...+.|.....++.....+.    .+.+++.+.++.+.   +.++.+ +. -+.+.++...++|++.
T Consensus        82 ~l~~~eeIle~Ak~ak~~Ga~r~c~~aagr~~~----~~~~~i~~~v~~Vk~~~~le~c~slG~l~~eq~~~L~~aGvd~  157 (335)
T COG0502          82 KLMEVEEILEAAKKAKAAGATRFCMGAAGRGPG----RDMEEVVEAIKAVKEELGLEVCASLGMLTEEQAEKLADAGVDR  157 (335)
T ss_pred             hcCCHHHHHHHHHHHHHcCCceEEEEEeccCCC----ccHHHHHHHHHHHHHhcCcHHhhccCCCCHHHHHHHHHcChhh
Confidence            467899999999999999976666654332111    45677777777554   333322 22 2567889999999998


Q ss_pred             EEEeccCchH-HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCC-CCEEE
Q 015894          189 VAIFASASES-FSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMG-CSEIS  266 (398)
Q Consensus       189 v~i~~~~Sd~-~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~G-ad~I~  266 (398)
                      +.--.-+|+- |.+-....|.++-+    +.++.+|+.|+++.....  +|..-    +.++-++.+..+.+.. ++.|-
T Consensus       158 ynhNLeTs~~~y~~I~tt~t~edR~----~tl~~vk~~Gi~vcsGgI--~GlGE----s~eDri~~l~~L~~l~~pdsVP  227 (335)
T COG0502         158 YNHNLETSPEFYENIITTRTYEDRL----NTLENVREAGIEVCSGGI--VGLGE----TVEDRAELLLELANLPTPDSVP  227 (335)
T ss_pred             eecccccCHHHHcccCCCCCHHHHH----HHHHHHHHcCCccccceE--ecCCC----CHHHHHHHHHHHHhCCCCCeee
Confidence            8764444444 44444455666555    556889999999874444  44321    4566677777888888 77764


Q ss_pred             E------ccC----cCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCC
Q 015894          267 L------GDT----IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKG  336 (398)
Q Consensus       267 L------~DT----~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~g  336 (398)
                      |      ++|    .=-+.|.+.-..|+..|-.+|...|-+- =-.-.+.-....-|+.+||+.|=++. .+.-      
T Consensus       228 In~l~P~~GTPle~~~~~~~~e~lk~IA~~Ri~~P~~~Ir~s-~gr~~~~~~~q~~~~~aGansi~~g~-~~lt------  299 (335)
T COG0502         228 INFLNPIPGTPLENAKPLDPFEFLKTIAVARIIMPKSMIRLS-AGRETMLPELQALAFMAGANSIFVGD-KYLT------  299 (335)
T ss_pred             eeeecCCCCCccccCCCCCHHHHHHHHHHHHHHCCcceeEcc-CCcccccHHHHHHHHHhccceeeecc-eEee------
Confidence            3      222    3356788889999999988997444332 22233334446677889999776665 2222      


Q ss_pred             CCCCccHHHHHHHHHhCCCCCc
Q 015894          337 ASGNVATEDVVYMLNGLGVRTN  358 (398)
Q Consensus       337 raGNa~lE~vv~~L~~~Gi~t~  358 (398)
                       +.|...|+-...++.+|....
T Consensus       300 -t~~~~~e~D~~~l~~lgl~~e  320 (335)
T COG0502         300 -TPGPDEDKDLELLKDLGLEPE  320 (335)
T ss_pred             -cCCCCchhHHHHHHHcCCCcc
Confidence             335888999899998887544

>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea

Probab=96.76  E-value=0.024  Score=53.71  Aligned_cols=189  Identities=17%  Similarity=0.196  Sum_probs=110.2

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH---hcc-CCcEEEEe-C---CHhhHHHHHHc
Q 015894          113 KNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ---NVE-GARFPVLT-P---NLKGFEAAVAA  184 (398)
Q Consensus       113 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~---~~~-~~~l~~l~-~---n~~~ie~a~~~  184 (398)
                      +...+.++..++++...+.|++.+-+...    +++.. +. .+.....   ++. .+.+.... .   -...++.+++.
T Consensus        15 ~p~~~~~d~~~~~~~~~~~g~~av~v~~~----~~~~~-~~-~~~~~~~~i~~~~~~~~i~~p~~~~~~~~~~v~~a~~~   88 (235)
T cd00958          15 GPNPGLEDPEETVKLAAEGGADAVALTKG----IARAY-GR-EYAGDIPLIVKLNGSTSLSPKDDNDKVLVASVEDAVRL   88 (235)
T ss_pred             CCCccccCHHHHHHHHHhcCCCEEEeChH----HHHhc-cc-ccCCCCcEEEEECCCCCCCCCCCCchhhhcCHHHHHHC
Confidence            33456777788999999999999988632    11110 00 0000000   000 00000000 0   12358899999


Q ss_pred             CCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE
Q 015894          185 GAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE  264 (398)
Q Consensus       185 Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~  264 (398)
                      |++.|.+.+...+.        +..+.++.+.++++.|++.|+++.+... ..|.......+++.+...++.+.++|+|.
T Consensus        89 Ga~~v~~~~~~~~~--------~~~~~~~~i~~v~~~~~~~g~~~iie~~-~~g~~~~~~~~~~~i~~~~~~a~~~GaD~  159 (235)
T cd00958          89 GADAVGVTVYVGSE--------EEREMLEELARVAAEAHKYGLPLIAWMY-PRGPAVKNEKDPDLIAYAARIGAELGADI  159 (235)
T ss_pred             CCCEEEEEEecCCc--------hHHHHHHHHHHHHHHHHHcCCCEEEEEe-ccCCcccCccCHHHHHHHHHHHHHHCCCE
Confidence            99988554432211        2457788899999999999998764332 11111111234566666688888999999


Q ss_pred             EEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEe---CCccchHHHHHHHHHHhCCCEEeec
Q 015894          265 ISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHF---HDTYGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       265 I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~---Hnd~GlA~ANalaAl~aGa~~VD~S  324 (398)
                      |.+.=|.   .+..+    +.+.+..|. |+-+=+   ..|..-.+.|+-.++++||+.|-..
T Consensus       160 Ik~~~~~---~~~~~----~~i~~~~~~-pvv~~GG~~~~~~~~~l~~~~~~~~~Ga~gv~vg  214 (235)
T cd00958         160 VKTKYTG---DAESF----KEVVEGCPV-PVVIAGGPKKDSEEEFLKMVYDAMEAGAAGVAVG  214 (235)
T ss_pred             EEecCCC---CHHHH----HHHHhcCCC-CEEEeCCCCCCCHHHHHHHHHHHHHcCCcEEEec
Confidence            9985332   33444    444444442 343322   3566668899999999999977443

Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.

>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=96.67  E-value=0.3  Score=48.34  Aligned_cols=189  Identities=15%  Similarity=0.187  Sum_probs=127.6

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-c--CCcEEEEe---CCHhhHHHHHHcCCCE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-E--GARFPVLT---PNLKGFEAAVAAGAKE  188 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~--~~~l~~l~---~n~~~ie~a~~~Gv~~  188 (398)
                      .++.+....++++-.+.+.+.|=-.++..-++.    ..+.+...++.. .  ++.+....   .+.+.+++|+++|...
T Consensus        25 ~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~----g~~~~~~~~~~~A~~~~VPV~lHLDHg~~~e~i~~Ai~~GftS  100 (284)
T PRK09195         25 IHNLETMQVVVETAAELHSPVIIAGTPGTFSYA----GTEYLLAIVSAAAKQYHHPLALHLDHHEKFDDIAQKVRSGVRS  100 (284)
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhC----CHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCE
Confidence            578888888999999999998766554332221    223333444421 2  33333332   3577899999999998


Q ss_pred             EEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC--------CCCCHHHHHHHHHHHHhC
Q 015894          189 VAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE--------GMVPPSKVAYVSKQLYDM  260 (398)
Q Consensus       189 v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~--------~r~~~~~l~~~a~~l~~~  260 (398)
                      |.+=.|          ..+.+++++.-++++++|+..|+.|++.|-..-|.++.        ..++|+...++++   +.
T Consensus       101 VM~DgS----------~l~~eeNi~~T~~vv~~Ah~~gv~VEaElG~vgg~e~~~~~~~~~~~~T~peea~~Fv~---~T  167 (284)
T PRK09195        101 VMIDGS----------HLPFAQNISLVKEVVDFCHRFDVSVEAELGRLGGQEDDLQVDEADALYTDPAQAREFVE---AT  167 (284)
T ss_pred             EEeCCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEEEecccCcccCcccccccccCCCHHHHHHHHH---HH
Confidence            877332          23578999999999999999999999888776444432        1368877777655   56


Q ss_pred             CCCEE--EEccCcCcC--CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          261 GCSEI--SLGDTIGVG--TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       261 Gad~I--~L~DT~G~~--~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      |+|.+  .+.-.=|.-  .|.==.++++.+++..+ +||.+|+=.  |..-.....|++.|+.-|+.
T Consensus       168 gvD~LAvaiGt~HG~y~~~p~Ld~~~L~~I~~~~~-vPLVLHGgS--G~~~e~~~~ai~~Gi~KiNi  231 (284)
T PRK09195        168 GIDSLAVAIGTAHGMYKGEPKLDFDRLENIRQWVN-IPLVLHGAS--GLPTKDIQQTIKLGICKVNV  231 (284)
T ss_pred             CcCEEeeccCccccccCCCCcCCHHHHHHHHHHhC-CCeEEecCC--CCCHHHHHHHHHcCCeEEEe
Confidence            88864  333333442  24333456777777764 588888754  67788899999999986654

>PRK05301 pyrroloquinoline quinone biosynthesis protein PqqE; Provisional

Probab=96.65  E-value=0.34  Score=49.30  Aligned_cols=139  Identities=12%  Similarity=0.130  Sum_probs=90.5

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC----CHhhHHHHHHcCCCEEE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP----NLKGFEAAVAAGAKEVA  190 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~----n~~~ie~a~~~Gv~~v~  190 (398)
                      .++.++..++++.+.+.|+..|.++. ..|-..   .|..++++.+++. +..+.+.+.    +.+-++...+.|++.|.
T Consensus        45 ~~~~e~~~~ii~~~~~~g~~~v~~~G-GEPll~---~~~~~il~~~~~~-g~~~~i~TNG~ll~~~~~~~L~~~g~~~v~  119 (378)
T PRK05301         45 ELSTEEWIRVLREARALGALQLHFSG-GEPLLR---KDLEELVAHAREL-GLYTNLITSGVGLTEARLAALKDAGLDHIQ  119 (378)
T ss_pred             CCCHHHHHHHHHHHHHcCCcEEEEEC-CccCCc---hhHHHHHHHHHHc-CCcEEEECCCccCCHHHHHHHHHcCCCEEE
Confidence            57889999999999999998877753 222111   2445555555532 344333332    34557777889999999


Q ss_pred             EeccCc--hHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 015894          191 IFASAS--ESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG  268 (398)
Q Consensus       191 i~~~~S--d~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~  268 (398)
                      |.+...  +.|-+ ..+..  ..++.+.+.++.+++.|+.|.+...  +     .+.+.+++.++++.+.+.|++.+.+.
T Consensus       120 iSldg~~~e~~d~-irg~~--g~f~~~~~~i~~l~~~g~~v~i~~v--v-----~~~N~~~i~~~~~~~~~lgv~~i~~~  189 (378)
T PRK05301        120 LSFQDSDPELNDR-LAGTK--GAFAKKLAVARLVKAHGYPLTLNAV--I-----HRHNIDQIPRIIELAVELGADRLELA  189 (378)
T ss_pred             EEecCCCHHHHHH-HcCCC--chHHHHHHHHHHHHHCCCceEEEEE--e-----ecCCHHHHHHHHHHHHHcCCCEEEEe
Confidence            876653  23321 11211  2456666778889999998764333  2     34567888999999999999988764

>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed

Probab=96.64  E-value=0.19  Score=47.36  Aligned_cols=155  Identities=18%  Similarity=0.207  Sum_probs=102.0

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccC-CcEEEEe-CCHhhHHHHHHcCCCEEEEe
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEG-ARFPVLT-PNLKGFEAAVAAGAKEVAIF  192 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~-~~l~~l~-~n~~~ie~a~~~Gv~~v~i~  192 (398)
                      .+.++-+++++.|.+.|++.||+++- .+       +..+.++.++ +.++ ..+.+=+ .+.++++.++++|++.++.-
T Consensus        19 ~~~~~~~~~~~a~~~gGi~~iEvt~~-~~-------~~~~~i~~l~~~~~~~~~iGaGTV~~~~~~~~a~~aGA~fivsp   90 (206)
T PRK09140         19 ITPDEALAHVGALIEAGFRAIEIPLN-SP-------DPFDSIAALVKALGDRALIGAGTVLSPEQVDRLADAGGRLIVTP   90 (206)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEeCC-Cc-------cHHHHHHHHHHHcCCCcEEeEEecCCHHHHHHHHHcCCCEEECC
Confidence            37888899999999999999999962 22       2334454444 4553 4444333 57889999999999988863


Q ss_pred             ccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcC
Q 015894          193 ASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIG  272 (398)
Q Consensus       193 ~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G  272 (398)
                      .  .+                  .+++++++..|..+-.      |     -.+++++    ..+.++|+|.|.+=-+ +
T Consensus        91 ~--~~------------------~~v~~~~~~~~~~~~~------G-----~~t~~E~----~~A~~~Gad~vk~Fpa-~  134 (206)
T PRK09140         91 N--TD------------------PEVIRRAVALGMVVMP------G-----VATPTEA----FAALRAGAQALKLFPA-S  134 (206)
T ss_pred             C--CC------------------HHHHHHHHHCCCcEEc------c-----cCCHHHH----HHHHHcCCCEEEECCC-C
Confidence            2  11                  2556777888887642      2     2356553    3456799999876221 2


Q ss_pred             cCCHHHHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894          273 VGTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILASLQMGISTVD  322 (398)
Q Consensus       273 ~~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD  322 (398)
                      .+.|..    ++.++..+| .+|+-.=+    |.-..|.-.-+++|++.|=
T Consensus       135 ~~G~~~----l~~l~~~~~~~ipvvaiG----GI~~~n~~~~~~aGa~~va  177 (206)
T PRK09140        135 QLGPAG----IKALRAVLPPDVPVFAVG----GVTPENLAPYLAAGAAGFG  177 (206)
T ss_pred             CCCHHH----HHHHHhhcCCCCeEEEEC----CCCHHHHHHHHHCCCeEEE
Confidence            233544    444555554 44554432    6777999999999999764

>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=96.62  E-value=0.66  Score=45.42  Aligned_cols=180  Identities=13%  Similarity=0.131  Sum_probs=110.1

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEecCCCCCccc-CCC-CHHHHHHHHHhc---cCCcEEEEeCCHhhHHHHHHcCCCEEEE
Q 015894          117 PAVVKVELIKLLVSSGLAVVEATSFVSPKWVP-QLA-DAKDVMAAIQNV---EGARFPVLTPNLKGFEAAVAAGAKEVAI  191 (398)
Q Consensus       117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p-~~~-D~~~v~~~i~~~---~~~~l~~l~~n~~~ie~a~~~Gv~~v~i  191 (398)
                      +.++.+++|+.|.++|+..+-.+++- |+--| .+. -.++-++.+++.   .+..+..=..+...++.+.+. ++.+.|
T Consensus        39 ~~~~~~~~A~~lk~~g~~~~r~~~~k-pRTs~~s~~G~g~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~-vd~~kI  116 (266)
T PRK13398         39 SEEQMVKVAEKLKELGVHMLRGGAFK-PRTSPYSFQGLGEEGLKILKEVGDKYNLPVVTEVMDTRDVEEVADY-ADMLQI  116 (266)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEeeec-CCCCCCccCCcHHHHHHHHHHHHHHcCCCEEEeeCChhhHHHHHHh-CCEEEE
Confidence            78889999999999999999999763 11111 111 123334444432   233333333466777777777 888887


Q ss_pred             eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC-CCHHHHHHHHHHHHhCCCCEEEEccC
Q 015894          192 FASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGM-VPPSKVAYVSKQLYDMGCSEISLGDT  270 (398)
Q Consensus       192 ~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r-~~~~~l~~~a~~l~~~Gad~I~L~DT  270 (398)
                      -.....          .       .+..+++.+.|..|.  +.       .+. .+++.+...++.+...|-+.+.|+..
T Consensus       117 ga~~~~----------n-------~~LL~~~a~~gkPV~--lk-------~G~~~s~~e~~~A~e~i~~~Gn~~i~L~~r  170 (266)
T PRK13398        117 GSRNMQ----------N-------FELLKEVGKTKKPIL--LK-------RGMSATLEEWLYAAEYIMSEGNENVVLCER  170 (266)
T ss_pred             Cccccc----------C-------HHHHHHHhcCCCcEE--Ee-------CCCCCCHHHHHHHHHHHHhcCCCeEEEEEC
Confidence            533211          1       134455567788875  33       122 37899999999999999987777764


Q ss_pred             cC---cCCH-HHHHH-HHHHHHhhCCCCeEEE-EeCCc--cchHHHHHHHHHHhCCC--EEeecc
Q 015894          271 IG---VGTP-GTVIP-MLEAVLDAVPVDKLAV-HFHDT--YGQALSNILASLQMGIS--TVDSSV  325 (398)
Q Consensus       271 ~G---~~~P-~~v~~-lv~~l~~~~p~~~l~~-H~Hnd--~GlA~ANalaAl~aGa~--~VD~Sv  325 (398)
                      -+   ...| ..+.- .+..+++.++ .||.+ =.|-+  .-+...-+++|+.+||+  +|+.-+
T Consensus       171 G~~t~~~Y~~~~vdl~~i~~lk~~~~-~pV~~D~sHs~G~~~~v~~~~~aAva~Ga~Gl~iE~H~  234 (266)
T PRK13398        171 GIRTFETYTRNTLDLAAVAVIKELSH-LPIIVDPSHATGRRELVIPMAKAAIAAGADGLMIEVHP  234 (266)
T ss_pred             CCCCCCCCCHHHHHHHHHHHHHhccC-CCEEEeCCCcccchhhHHHHHHHHHHcCCCEEEEeccC
Confidence            21   1233 33322 3344444443 57888 45543  23557889999999999  666443

>TIGR03234 OH-pyruv-isom hydroxypyruvate isomerase

Probab=96.58  E-value=0.46  Score=45.26  Aligned_cols=189  Identities=17%  Similarity=0.124  Sum_probs=101.5

Q ss_pred             HHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe-C---------------C-----H----h
Q 015894          122 VELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT-P---------------N-----L----K  176 (398)
Q Consensus       122 ~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~-~---------------n-----~----~  176 (398)
                      .+.++.+.++|++.||+..+..       .+.+++...++. .+.+++++. +               .     .    +
T Consensus        17 ~e~~~~~~e~G~~~vEl~~~~~-------~~~~~l~~~l~~-~gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   88 (254)
T TIGR03234        17 LERFAAAAQAGFTGVEYLFPYD-------WDAEALKARLAA-AGLEQVLFNLPAGDWAAGERGIACLPGREEEFREGVAL   88 (254)
T ss_pred             HHHHHHHHHcCCCEEEecCCcc-------CCHHHHHHHHHH-cCCeEEEEeCCCCccccCCCccccCCccHHHHHHHHHH
Confidence            4566677799999999975321       245555555542 345555442 1               0     0    1


Q ss_pred             hHHHHHHcCCCEEEEeccCchHHHhhhcCCC----HHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH
Q 015894          177 GFEAAVAAGAKEVAIFASASESFSKSNINCT----IEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAY  252 (398)
Q Consensus       177 ~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s----~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~  252 (398)
                      -++.|.+.|++.|++..+..+      .+.+    .+...+.+++++++|++.|+.+...-..-+.+|...-.+++...+
T Consensus        89 ~i~~a~~lg~~~i~~~~g~~~------~~~~~~~~~~~~~~~l~~l~~~A~~~gi~l~lE~~~~~~~~~~~l~t~~~~~~  162 (254)
T TIGR03234        89 AIAYARALGCPQVNCLAGKRP------AGVSPEEARATLVENLRYAADALDRIGLTLLIEPINSFDMPGFFLTTTEQALA  162 (254)
T ss_pred             HHHHHHHhCCCEEEECcCCCC------CCCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEECCcccCCCChhcCHHHHHH
Confidence            245567789999887644211      0112    234456678888999999987652211000011111235555555


Q ss_pred             HHHHHHhCCCCEE-EEccCcCcCCH-HHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCC
Q 015894          253 VSKQLYDMGCSEI-SLGDTIGVGTP-GTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGG  330 (398)
Q Consensus       253 ~a~~l~~~Gad~I-~L~DT~G~~~P-~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGe  330 (398)
                      +++   +.+-+.+ ..-|+.=...- +...++++.+.   + --.++|..|+.|.                       . 
T Consensus       163 li~---~v~~~~~~i~~D~~h~~~~~e~~~~~i~~~~---~-~i~~vHi~D~~~~-----------------------~-  211 (254)
T TIGR03234       163 VID---DVGRENLKLQYDLYHMQRMGGDLARTLAAYA---A-HIGHVQIADNPGR-----------------------H-  211 (254)
T ss_pred             HHH---HhCCCCEeEeeehhhhhhhCCCHHHHHHHhh---c-cEeEEEeCCCCCC-----------------------C-
Confidence            554   3444433 34455322211 12233333332   2 2478888875320                       0 


Q ss_pred             CCCCCCCCCCccHHHHHHHHHhCCCCCcc
Q 015894          331 CPYAKGASGNVATEDVVYMLNGLGVRTNV  359 (398)
Q Consensus       331 cp~a~graGNa~lE~vv~~L~~~Gi~t~i  359 (398)
                         .+ +.|..+..+++..|++.|++--+
T Consensus       212 ---~~-G~G~id~~~il~~L~~~gy~g~~  236 (254)
T TIGR03234       212 ---EP-GTGEINYRFLFAVLDRLGYDGWV  236 (254)
T ss_pred             ---CC-CCCccCHHHHHHHHHHCCCCceE
Confidence               12 36899999999999998876333

This enzyme interconverts tartronate semi-aldehyde (TSA, aka 2-hydroxy 3-oxopropionate) and hydroxypyruvate. The E. coli enzyme has been characterized and found to be specific for TSA, contain no cofactors, and have a rather high Km for hydroxypyruvate of 12.5 mM. The gene is ofter found in association with glyoxalate carboligase (which produces TSA), but has been shown to have no effect on growth on glyoxalate when knocked out. This is consistent with the fact that the gene for tartronate semialdehyde reductase (glxR) is also associated and may have primary responsibility for the catabolism of TSA.

>PRK11613 folP dihydropteroate synthase; Provisional

Probab=96.57  E-value=0.87  Score=45.01  Aligned_cols=168  Identities=17%  Similarity=0.212  Sum_probs=93.0

Q ss_pred             cEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCC-CCcccCCCCHHHHHH---HHHhcc---CCcEEE
Q 015894           98 VKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVS-PKWVPQLADAKDVMA---AIQNVE---GARFPV  170 (398)
Q Consensus        98 I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~-~~~~p~~~D~~~v~~---~i~~~~---~~~l~~  170 (398)
                      +-|+-+|+ |-..--|..++.+..++-+..+.+.|.+.|++|.-.. |..-+ ....+|+.+   .++.+.   ++.+++
T Consensus        18 mGIlNvTp-DSFsdgg~~~~~~~a~~~a~~~~~~GAdIIDIGgeSTrPg~~~-v~~eeE~~Rv~pvI~~l~~~~~~~ISI   95 (282)
T PRK11613         18 MGILNVTP-DSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAE-VSVEEELDRVIPVVEAIAQRFEVWISV   95 (282)
T ss_pred             EEEEcCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCC-CCHHHHHHHHHHHHHHHHhcCCCeEEE
Confidence            44555554 3333333347899999999999999999999996443 32111 112233222   333222   343433


Q ss_pred             EeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCC--CCC--
Q 015894          171 LTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEG--MVP--  246 (398)
Q Consensus       171 l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~--r~~--  246 (398)
                      =+.+.+-++.|+++|++.|.=..+.++           ++       +.+.+++.|..+.  ++..-|.|...  +..  
T Consensus        96 DT~~~~va~~AL~~GadiINDI~g~~d-----------~~-------~~~~~a~~~~~vV--lmh~~g~p~~~~~~~~y~  155 (282)
T PRK11613         96 DTSKPEVIRESAKAGAHIINDIRSLSE-----------PG-------ALEAAAETGLPVC--LMHMQGNPKTMQEAPKYD  155 (282)
T ss_pred             ECCCHHHHHHHHHcCCCEEEECCCCCC-----------HH-------HHHHHHHcCCCEE--EEcCCCCCCccccCCCcc
Confidence            345777889999999998754323221           11       2233466776664  55443433221  111  


Q ss_pred             ------HHHHHHHHHHHHhCCCC--EEEEccCcCcC-CHHHHHHHHHHHH
Q 015894          247 ------PSKVAYVSKQLYDMGCS--EISLGDTIGVG-TPGTVIPMLEAVL  287 (398)
Q Consensus       247 ------~~~l~~~a~~l~~~Gad--~I~L~DT~G~~-~P~~v~~lv~~l~  287 (398)
                            ..++.+.++.+.++|++  .|.+==-.|.. ++.+-.++++.+.
T Consensus       156 dv~~~v~~~l~~~i~~a~~~GI~~~~IilDPGiGF~k~~~~n~~ll~~l~  205 (282)
T PRK11613        156 DVFAEVNRYFIEQIARCEAAGIAKEKLLLDPGFGFGKNLSHNYQLLARLA  205 (282)
T ss_pred             cHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCcCCCHHHHHHHHHHHH
Confidence                  14566677788889986  44432223432 2455666666654

>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase

Probab=96.57  E-value=0.23  Score=46.78  Aligned_cols=180  Identities=13%  Similarity=0.050  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCCHhhHHHHHHcCCCEEEEeccCchH
Q 015894          119 VVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASES  198 (398)
Q Consensus       119 ~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~  198 (398)
                      ++..++++.+.++|.|.|++|.-..-.    .....+++..+|+..+..+...--+...+    ..++|-+-+..=+|- 
T Consensus        11 e~~~~ia~~v~~~gtDaI~VGGS~gvt----~~~~~~~v~~ik~~~~lPvilfp~~~~~i----~~~aD~~~~~sllns-   81 (205)
T TIGR01769        11 DEIEKIAKNAKDAGTDAIMVGGSLGIV----ESNLDQTVKKIKKITNLPVILFPGNVNGL----SRYADAVFFMSLLNS-   81 (205)
T ss_pred             HHHHHHHHHHHhcCCCEEEEcCcCCCC----HHHHHHHHHHHHhhcCCCEEEECCCcccc----CcCCCEEEEEEeecC-
Confidence            555678999999999999998422110    01123344555543233332222244442    345776554321111 


Q ss_pred             HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcE--EEEEeeeecCCC--------CCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 015894          199 FSKSNINCTIEDSLIRYRDVALAARELSIPV--RGYLSCVVGCPV--------EGMVPPSKVAYVSKQLYDMGCSEISLG  268 (398)
Q Consensus       199 ~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v--~~~l~~~fg~~~--------~~r~~~~~l~~~a~~l~~~Gad~I~L~  268 (398)
                             .+++..+..-.+.+-..|+.|.++  ++|+..--++-.        .-+.+++....++..+..+|.+.|+|.
T Consensus        82 -------~~~~~i~g~~~~~~~~~~~~~~e~ip~gYiv~~~~~~v~~v~~a~~ip~~~~e~~~~~a~aa~~~G~~~i~Le  154 (205)
T TIGR01769        82 -------ADTYFIVGAQILGAITILKLNLEVIPMAYLIVGPGGAVGYVGKAREIPYNKPEIAAAYCLAAKYFGMKWVYLE  154 (205)
T ss_pred             -------CCcchhhhHHHHHHHHHHHcCCcccceEEEEECCCCceeeecCcccCCCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence                   122233333334444558888864  566553211100        012577888888888888999999999


Q ss_pred             cCcCcCCHHHHHHHHHHHHhhCCCCe--EEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894          269 DTIGVGTPGTVIPMLEAVLDAVPVDK--LAVHFHDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       269 DT~G~~~P~~v~~lv~~l~~~~p~~~--l~~H~Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                      |..|...|.. .++++.+++... .|  +++-.++-     ..+..++++||+.|
T Consensus       155 ~~sGa~~~v~-~e~i~~Vk~~~~-~Pv~vGGGIrs~-----e~a~~l~~~GAD~V  202 (205)
T TIGR01769       155 AGSGASYPVN-PETISLVKKASG-IPLIVGGGIRSP-----EIAYEIVLAGADAI  202 (205)
T ss_pred             cCCCCCCCCC-HHHHHHHHHhhC-CCEEEeCCCCCH-----HHHHHHHHcCCCEE
Confidence            9988864433 666777776652 23  33332221     33444557888866

This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.

>COG1060 ThiH Thiamine biosynthesis enzyme ThiH and related uncharacterized enzymes [Coenzyme metabolism / General function prediction only]

Probab=96.55  E-value=0.18  Score=51.73  Aligned_cols=230  Identities=13%  Similarity=0.069  Sum_probs=137.7

Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh-ccCCcEEEEeC------------CHh-h
Q 015894          112 EKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN-VEGARFPVLTP------------NLK-G  177 (398)
Q Consensus       112 ~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~~------------n~~-~  177 (398)
                      .+..++.++..+.++.+.+.|+..|-+-+..+|...+.  -.++.++.+++ .|++.+-++.+            ..+ .
T Consensus        86 ~~y~Ls~eeI~~~~~~~~~~G~~Evli~gG~~p~~~~~--y~~~~~~~ik~~~p~~~i~a~s~~ei~~~~~~~~~s~~E~  163 (370)
T COG1060          86 KAYTLSPEEILEEVREAVKRGITEVLIVGGEHPELSLE--YYEELFRTIKEEFPDLHIHALSAGEILFLAREGGLSYEEV  163 (370)
T ss_pred             cccccCHHHHHHHHHHHHHcCCeEEEEecCcCCCcchH--HHHHHHHHHHHhCcchhhcccCHHHhHHHHhccCCCHHHH
Confidence            45679999999999999999999999987777653321  13445556663 56665555542            122 3


Q ss_pred             HHHHHHcCCCEEEEeccCchHHHhh------hcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHH
Q 015894          178 FEAAVAAGAKEVAIFASASESFSKS------NINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVA  251 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~Sd~~~~~------~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~  251 (398)
                      +++..++|.+.+-.+-  .+++.+.      .-.++.++=    .++.+.|.++|++..++.++-.   .+++.+.-..+
T Consensus       164 l~~Lk~aGldsmpg~~--aeil~e~vr~~~~p~K~~~~~w----le~~~~Ah~lGI~~tatml~Gh---~E~~ed~~~hl  234 (370)
T COG1060         164 LKRLKEAGLDSMPGGG--AEILSEEVRKIHCPPKKSPEEW----LEIHERAHRLGIPTTATMLLGH---VETREDRIDHL  234 (370)
T ss_pred             HHHHHHcCCCcCcCcc--eeechHHHHHhhCCCCCCHHHH----HHHHHHHHHcCCCccceeEEEe---cCCHHHHHHHH
Confidence            7888899998654321  1222211      223344433    3567899999999887666422   12222222222


Q ss_pred             HHHHHHH-hCC-CCEEEE-----ccC---cCc---CCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCC
Q 015894          252 YVSKQLY-DMG-CSEISL-----GDT---IGV---GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGI  318 (398)
Q Consensus       252 ~~a~~l~-~~G-ad~I~L-----~DT---~G~---~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa  318 (398)
                      .-++.+. ++| ...|.+     +.+   ...   .++.++...++..|-.++. .+...-=-.+-+++.-+.+|+.+||
T Consensus       235 ~~ir~lQ~~~gg~~~fI~~~f~p~~~~~~~~~~~~~~~~~~l~~iAiaRi~l~~-~i~~~~a~w~~~g~~~~~~~l~~Ga  313 (370)
T COG1060         235 EHIRDLQDETGGFQEFIPLRFRPENGPLPAEVVPEASLEQDLKAIALARIFLDN-NISNIQASWLRDGVILAQAALLSGA  313 (370)
T ss_pred             HHHHHHHHHhCCcEEEEcccccCCCCCccccCCCCCCHHHHHHHHHHHHHHccC-ccccccCcccccchHHHHHHHHhCc
Confidence            3333443 344 433322     233   112   3445555566655554542 2333333455666777889999999


Q ss_pred             CEEeeccccCCCCCCCCCCCC-----CccHHHHHHHHHhCCCCC
Q 015894          319 STVDSSVSGLGGCPYAKGASG-----NVATEDVVYMLNGLGVRT  357 (398)
Q Consensus       319 ~~VD~Sv~GlGecp~a~graG-----Na~lE~vv~~L~~~Gi~t  357 (398)
                      +-+.++...  ++-.-  .+|     +.+.|+++..++..|+.+
T Consensus       314 nD~ggt~~~--E~v~~--~a~~~~~~~~~~eel~~~i~~aG~~p  353 (370)
T COG1060         314 NDLGGTGYE--EKVNP--AAGAFSGDWRSVEELAALIKEAGRIP  353 (370)
T ss_pred             ccCcCCCcc--ccccc--ccccccCCCCCHHHHHHHHHHcCCCe
Confidence            988888776  63221  344     888999999999988743

>PRK09997 hydroxypyruvate isomerase; Provisional

Probab=96.54  E-value=0.38  Score=46.08  Aligned_cols=186  Identities=11%  Similarity=0.086  Sum_probs=102.2

Q ss_pred             HHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe-C---------------C-----Hh----
Q 015894          122 VELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT-P---------------N-----LK----  176 (398)
Q Consensus       122 ~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~-~---------------n-----~~----  176 (398)
                      .+.++.+.++|++.||++.+.       ..+.+++.+.++. .+++++... +               .     .+    
T Consensus        18 ~~~l~~~a~~Gf~~VEl~~~~-------~~~~~~~~~~l~~-~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (258)
T PRK09997         18 LARFEKAAQCGFRGVEFMFPY-------DYDIEELKQVLAS-NKLEHTLHNLPAGDWAAGERGIACIPGREEEFRDGVAA   89 (258)
T ss_pred             HHHHHHHHHhCCCEEEEcCCC-------CCCHHHHHHHHHH-cCCcEEEEcCCCCccccCcCccccCCCcHHHHHHHHHH
Confidence            456888999999999997532       1356777766653 234443211 0               0     11    


Q ss_pred             hHHHHHHcCCCEEEEeccCchHHHhhhcCCCH----HHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH
Q 015894          177 GFEAAVAAGAKEVAIFASASESFSKSNINCTI----EDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAY  252 (398)
Q Consensus       177 ~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~----~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~  252 (398)
                      -++.|.+.|++.|.++.+..+      -+.+.    +...+.+.++.++|++.|+.+...-...+..+...-.+++...+
T Consensus        90 ~i~~a~~lga~~i~~~~g~~~------~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~n~~~~~~~~~~~~~~~~~  163 (258)
T PRK09997         90 AIRYARALGNKKINCLVGKTP------AGFSSEQIHATLVENLRYAANMLMKEDILLLIEPINHFDIPGFHLTGTRQALK  163 (258)
T ss_pred             HHHHHHHhCCCEEEECCCCCC------CCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeCCCcCCCCCccCCHHHHHH
Confidence            245667789999887643210      11222    34456667888899999987642211001011111234555555


Q ss_pred             HHHHHHhCCCCEE-EEccCcCcCCH-HHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCC
Q 015894          253 VSKQLYDMGCSEI-SLGDTIGVGTP-GTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGG  330 (398)
Q Consensus       253 ~a~~l~~~Gad~I-~L~DT~G~~~P-~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGe  330 (398)
                      +++   +.+.+.+ -.-|+.=.... ..+.+.++.+    ++--.++|.+|..+-                       + 
T Consensus       164 ll~---~v~~~~v~l~~D~~h~~~~g~~~~~~~~~~----~~ri~~vHikD~~~~-----------------------~-  212 (258)
T PRK09997        164 LID---DVGCCNLKIQYDIYHMQRMEGELTNTMTQW----ADKIGHLQIADNPHR-----------------------G-  212 (258)
T ss_pred             HHH---HhCCCCEEEEeEHHHhhhcCCcHHHHHHHh----hCcccEEEeCCCCCC-----------------------C-
Confidence            554   4444433 34465322211 1233333333    333468899985320                       1 


Q ss_pred             CCCCCCCCCCccHHHHHHHHHhCCCC
Q 015894          331 CPYAKGASGNVATEDVVYMLNGLGVR  356 (398)
Q Consensus       331 cp~a~graGNa~lE~vv~~L~~~Gi~  356 (398)
                         .+ +.|..+...++..|++.|++
T Consensus       213 ---~~-G~G~id~~~i~~aL~~~Gy~  234 (258)
T PRK09997        213 ---EP-GTGEINYDYLFKVIENSDYN  234 (258)
T ss_pred             ---CC-CCCcCCHHHHHHHHHHhCCC
Confidence               12 36899999999999998875

>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]

Probab=96.52  E-value=0.43  Score=47.94  Aligned_cols=144  Identities=21%  Similarity=0.162  Sum_probs=101.5

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCC-CCHHHHHHHHHhccCCcEEEEeCCH----hhHHHHHHcCCCEE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQL-ADAKDVMAAIQNVEGARFPVLTPNL----KGFEAAVAAGAKEV  189 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~-~D~~~v~~~i~~~~~~~l~~l~~n~----~~ie~a~~~Gv~~v  189 (398)
                      .++.++..++++...+.||+-|-++-.-     |-+ .|..++.+.+++. +..-.+++.|-    +-.+...++|+++|
T Consensus        42 ~Ls~eei~~~~~~~~~~Gv~kvRlTGGE-----PllR~dl~eIi~~l~~~-~~~~islTTNG~~L~~~a~~Lk~AGl~rV  115 (322)
T COG2896          42 LLSLEEIRRLVRAFAELGVEKVRLTGGE-----PLLRKDLDEIIARLARL-GIRDLSLTTNGVLLARRAADLKEAGLDRV  115 (322)
T ss_pred             cCCHHHHHHHHHHHHHcCcceEEEeCCC-----chhhcCHHHHHHHHhhc-ccceEEEecchhhHHHHHHHHHHcCCcEE
Confidence            5899999999999999999999997531     222 4677777777755 45556777763    34566788999999


Q ss_pred             EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCC--EEE
Q 015894          190 AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIP-VRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCS--EIS  266 (398)
Q Consensus       190 ~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~-v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad--~I~  266 (398)
                      .|...+=|......+  |....++++.+-|+.|.+.|+. |-.  .++.   .. ..+.+++.++++.+.+.|+.  -|-
T Consensus       116 NVSLDsld~e~f~~I--T~~~~~~~Vl~GI~~A~~~Gl~pVKl--N~Vv---~k-gvNd~ei~~l~e~~~~~~~~lrfIE  187 (322)
T COG2896         116 NVSLDSLDPEKFRKI--TGRDRLDRVLEGIDAAVEAGLTPVKL--NTVL---MK-GVNDDEIEDLLEFAKERGAQLRFIE  187 (322)
T ss_pred             EeecccCCHHHHHHH--hCCCcHHHHHHHHHHHHHcCCCceEE--EEEE---ec-CCCHHHHHHHHHHHhhcCCceEEEE
Confidence            997554443322222  2223478888899999999996 653  3222   11 15788999999999999975  477


Q ss_pred             EccCcC
Q 015894          267 LGDTIG  272 (398)
Q Consensus       267 L~DT~G  272 (398)
                      +.|+-.
T Consensus       188 ~m~~g~  193 (322)
T COG2896         188 LMPLGE  193 (322)
T ss_pred             EeecCc
Confidence            777653

>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional

Probab=96.49  E-value=0.22  Score=49.82  Aligned_cols=137  Identities=14%  Similarity=0.057  Sum_probs=90.4

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCC-CCHHHHHHHHHhccCCcEEEEeCCH----hhHHHHHHcCCCEE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQL-ADAKDVMAAIQNVEGARFPVLTPNL----KGFEAAVAAGAKEV  189 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~-~D~~~v~~~i~~~~~~~l~~l~~n~----~~ie~a~~~Gv~~v  189 (398)
                      .++.++..++++.+.+.|+..|-++. ..|    -+ .|..++++.+++.++..-..++.|-    +-++...++|++.|
T Consensus        44 ~ls~eei~~li~~~~~~Gv~~I~~tG-GEP----llr~dl~~li~~i~~~~~l~~i~itTNG~ll~~~~~~L~~aGl~~v  118 (329)
T PRK13361         44 VLSLEELAWLAQAFTELGVRKIRLTG-GEP----LVRRGCDQLVARLGKLPGLEELSLTTNGSRLARFAAELADAGLKRL  118 (329)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEC-cCC----CccccHHHHHHHHHhCCCCceEEEEeChhHHHHHHHHHHHcCCCeE
Confidence            58999999999999999999998864 122    11 2455666666655554333444441    33566778999999


Q ss_pred             EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE
Q 015894          190 AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSI-PVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE  264 (398)
Q Consensus       190 ~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~-~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~  264 (398)
                      .|.+...+......++  ....++++.+.++.+++.|+ .+.++..  + .+   ..+.+++.++++.+.+.|++.
T Consensus       119 ~ISlDs~~~e~~~~i~--~~g~~~~vl~~i~~~~~~Gi~~v~in~v--~-~~---g~N~~ei~~~~~~~~~~gi~~  186 (329)
T PRK13361        119 NISLDTLRPELFAALT--RNGRLERVIAGIDAAKAAGFERIKLNAV--I-LR---GQNDDEVLDLVEFCRERGLDI  186 (329)
T ss_pred             EEEeccCCHHHhhhhc--CCCCHHHHHHHHHHHHHcCCCceEEEEE--E-EC---CCCHHHHHHHHHHHHhcCCeE
Confidence            9976554322222222  22456777788899999998 6654332  2 11   245688999999999999975

>PRK06806 fructose-bisphosphate aldolase; Provisional

Probab=96.49  E-value=0.82  Score=45.15  Aligned_cols=191  Identities=14%  Similarity=0.173  Sum_probs=125.6

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh-cc--CCcEEEEe---CCHhhHHHHHHcCCCE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN-VE--GARFPVLT---PNLKGFEAAVAAGAKE  188 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~-~~--~~~l~~l~---~n~~~ie~a~~~Gv~~  188 (398)
                      .+..+....++++-.+.+-+.|=-.++..-++.+    .+.+...++. ..  .+.+....   .+.+.++.|++.|++.
T Consensus        25 ~~n~e~~~avi~aAe~~~~Pvii~~~~~~~~~~~----~~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~Al~~G~ts  100 (281)
T PRK06806         25 VANMEMVMGAIKAAEELNSPIILQIAEVRLNHSP----LHLIGPLMVAAAKQAKVPVAVHFDHGMTFEKIKEALEIGFTS  100 (281)
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEEcCcchhccCC----hHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHcCCCE
Confidence            5788888889999999999987665543322221    2222223321 12  33333332   3567889999999999


Q ss_pred             EEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC------CCCCHHHHHHHHHHHHhCCC
Q 015894          189 VAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE------GMVPPSKVAYVSKQLYDMGC  262 (398)
Q Consensus       189 v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~------~r~~~~~l~~~a~~l~~~Ga  262 (398)
                      |.+=.+          ..+.++.++..++++++|++.|..|.+.+-..-+..+.      +-++++...+++   .+.|+
T Consensus       101 Vm~d~s----------~~~~~eni~~t~~v~~~a~~~gv~veaE~ghlG~~d~~~~~~g~s~t~~eea~~f~---~~tg~  167 (281)
T PRK06806        101 VMFDGS----------HLPLEENIQKTKEIVELAKQYGATVEAEIGRVGGSEDGSEDIEMLLTSTTEAKRFA---EETDV  167 (281)
T ss_pred             EEEcCC----------CCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeECCccCCcccccceeCCHHHHHHHH---HhhCC
Confidence            888433          23577899999999999999999998766653222221      135666655443   34799


Q ss_pred             CEEEE--ccCcCcC--CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeecc
Q 015894          263 SEISL--GDTIGVG--TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSV  325 (398)
Q Consensus       263 d~I~L--~DT~G~~--~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv  325 (398)
                      |.+.+  .=..|.-  .|.-=.++++.+++..+ +||..|+  .-|.-..|...++++|++-|++.-
T Consensus       168 DyLAvaiG~~hg~~~~~~~l~~~~L~~i~~~~~-iPlV~hG--~SGI~~e~~~~~i~~G~~kinv~T  231 (281)
T PRK06806        168 DALAVAIGNAHGMYNGDPNLRFDRLQEINDVVH-IPLVLHG--GSGISPEDFKKCIQHGIRKINVAT  231 (281)
T ss_pred             CEEEEccCCCCCCCCCCCccCHHHHHHHHHhcC-CCEEEEC--CCCCCHHHHHHHHHcCCcEEEEhH
Confidence            98877  5555533  12223346777777664 5788776  347778999999999999887643

>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate

Probab=96.48  E-value=0.25  Score=46.41  Aligned_cols=184  Identities=15%  Similarity=0.111  Sum_probs=106.9

Q ss_pred             hhccCCCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcE
Q 015894           89 KLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARF  168 (398)
Q Consensus        89 ~~~~~~p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l  168 (398)
                      |+...+|+.+.+...|+ -|+-.    =+..+..++++.+.+.|+..++++.+             +.++.++...+..+
T Consensus         2 ~~~~~~~~~~~~~~~~~-~~~~~----~~~~~i~~~a~~~~~~G~~~~~~~~~-------------~~~~~i~~~~~iPi   63 (219)
T cd04729           2 KLLEQLKGGLIVSCQAL-PGEPL----HSPEIMAAMALAAVQGGAVGIRANGV-------------EDIRAIRARVDLPI   63 (219)
T ss_pred             cHHHHhcCCeEEEccCC-CCCCc----CcHHHHHHHHHHHHHCCCeEEEcCCH-------------HHHHHHHHhCCCCE
Confidence            45566788888887776 33222    24567789999999999999986432             22334443233333


Q ss_pred             EE------------EeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCC-CcEEEEEee
Q 015894          169 PV------------LTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELS-IPVRGYLSC  235 (398)
Q Consensus       169 ~~------------l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G-~~v~~~l~~  235 (398)
                      ..            +.+....++.++++|++.|-+-.+...         .+.  -+.+.++++.+++.| +.+.+  . 
T Consensus        64 l~~~~~~~~~~~~~ig~~~~~~~~a~~aGad~I~~~~~~~~---------~p~--~~~~~~~i~~~~~~g~~~iiv--~-  129 (219)
T cd04729          64 IGLIKRDYPDSEVYITPTIEEVDALAAAGADIIALDATDRP---------RPD--GETLAELIKRIHEEYNCLLMA--D-  129 (219)
T ss_pred             EEEEecCCCCCCceeCCCHHHHHHHHHcCCCEEEEeCCCCC---------CCC--CcCHHHHHHHHHHHhCCeEEE--E-
Confidence            21            112344788999999996655332110         000  013456778888888 54432  1 


Q ss_pred             eecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc--cCcCcC--CHHHHHHHHHHHHhhCCCCeEEEEeCCccchH-HHHH
Q 015894          236 VVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG--DTIGVG--TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQA-LSNI  310 (398)
Q Consensus       236 ~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~--DT~G~~--~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA-~ANa  310 (398)
                              -.+++.    +..+.++|++.|.+.  +..+..  ......++++.+++.+ ++|+-.    .-|.. ..++
T Consensus       130 --------v~t~~e----a~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~-~ipvia----~GGI~~~~~~  192 (219)
T cd04729         130 --------ISTLEE----ALNAAKLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL-GIPVIA----EGRINSPEQA  192 (219)
T ss_pred             --------CCCHHH----HHHHHHcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc-CCCEEE----eCCCCCHHHH
Confidence                    124444    356778999988542  222211  1112236777777765 244443    45663 4788


Q ss_pred             HHHHHhCCCEE
Q 015894          311 LASLQMGISTV  321 (398)
Q Consensus       311 laAl~aGa~~V  321 (398)
                      ..++++||+.|
T Consensus       193 ~~~l~~GadgV  203 (219)
T cd04729         193 AKALELGADAV  203 (219)
T ss_pred             HHHHHCCCCEE
Confidence            88889998755

This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.

>PF04481 DUF561: Protein of unknown function (DUF561); InterPro: IPR007570 Protein in this entry are of unknown function and are found in cyanobacteria and the chloroplasts of algae

Probab=96.43  E-value=0.12  Score=48.92  Aligned_cols=175  Identities=23%  Similarity=0.238  Sum_probs=114.0

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCCHhhHHHHHHcCCCEEEEecc
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFAS  194 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~  194 (398)
                      .|+.+...+++++-...|.++|++.           +|++ +.+.++...+..+++-.-..+.+-.++++|++.|.|--.
T Consensus        23 NFd~~~V~~i~~AA~~ggAt~vDIA-----------adp~-LV~~~~~~s~lPICVSaVep~~f~~aV~AGAdliEIGNf   90 (242)
T PF04481_consen   23 NFDAESVAAIVKAAEIGGATFVDIA-----------ADPE-LVKLAKSLSNLPICVSAVEPELFVAAVKAGADLIEIGNF   90 (242)
T ss_pred             ccCHHHHHHHHHHHHccCCceEEec-----------CCHH-HHHHHHHhCCCCeEeecCCHHHHHHHHHhCCCEEEecch
Confidence            4999999999999999999999995           3554 566777777776666556677888999999998877433


Q ss_pred             CchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcC
Q 015894          195 ASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVG  274 (398)
Q Consensus       195 ~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~  274 (398)
                        |.|-..+...+.+|.|+..    +..|++=-.+.  ++-+  -|  .-.+.+.=.+++..+.+.|+|.|.   |-|..
T Consensus        91 --DsFY~qGr~f~a~eVL~Lt----~~tR~LLP~~~--LsVT--VP--HiL~ld~Qv~LA~~L~~~GaDiIQ---TEGgt  155 (242)
T PF04481_consen   91 --DSFYAQGRRFSAEEVLALT----RETRSLLPDIT--LSVT--VP--HILPLDQQVQLAEDLVKAGADIIQ---TEGGT  155 (242)
T ss_pred             --HHHHhcCCeecHHHHHHHH----HHHHHhCCCCc--eEEe--cC--ccccHHHHHHHHHHHHHhCCcEEE---cCCCC
Confidence              5565666667777776544    55555422222  2211  13  235678888999999999999985   22222


Q ss_pred             C--H---------HHHHHHHHHHH---hhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894          275 T--P---------GTVIPMLEAVL---DAVPVDKLAVHFHDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       275 ~--P---------~~v~~lv~~l~---~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                      +  |         +.....+....   +.. .+|+    =.--|+.--.+=.|+.+||..|
T Consensus       156 ss~p~~~g~lglIekaapTLAaay~ISr~v-~iPV----lcASGlS~vT~PmAiaaGAsGV  211 (242)
T PF04481_consen  156 SSKPTSPGILGLIEKAAPTLAAAYAISRAV-SIPV----LCASGLSAVTAPMAIAAGASGV  211 (242)
T ss_pred             CCCCCCcchHHHHHHHhHHHHHHHHHHhcc-CCce----EeccCcchhhHHHHHHcCCccc
Confidence            1  1         11111111111   111 1222    2456888888888889998754

As the family is exclusively found in phototrophic organisms it may play a role in photosynthesis.

>PRK06267 hypothetical protein; Provisional

Probab=96.39  E-value=0.6  Score=47.37  Aligned_cols=214  Identities=10%  Similarity=0.059  Sum_probs=119.5

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEE-Ee-CCHhhHHHHHHcCCCEEEEe
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPV-LT-PNLKGFEAAVAAGAKEVAIF  192 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~-l~-~n~~~ie~a~~~Gv~~v~i~  192 (398)
                      ..+.++.++-++.+.+.|++.+=+......    ...+.+++.+.++..++..+.+ +. .+..........|+. ..+-
T Consensus        62 ~~s~eeI~eea~~~~~~Gv~~~~lsgG~~~----~~~el~~i~e~I~~~~~~~~~~s~G~~d~~~~~~~~l~Gv~-g~~E  136 (350)
T PRK06267         62 RRRVESILAEAILMKRIGWKLEFISGGYGY----TTEEINDIAEMIAYIQGCKQYLNVGIIDFLNINLNEIEGVV-GAVE  136 (350)
T ss_pred             cCCHHHHHHHHHHHHHcCCCEEEEecCCCC----CHHHHHHHHHHHHHhhCCceEeecccCCHHHHhhccccCce-eeee
Confidence            568999999999999999985433221111    0122344555555444432111 11 123332222233432 1222


Q ss_pred             ccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEE------
Q 015894          193 ASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEIS------  266 (398)
Q Consensus       193 ~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~------  266 (398)
                      ..-.+.+.+..-+.+.++.    .+.++.+++.|+.+.+.++  +|. ..   +.+...+.++.+.+++++.+.      
T Consensus       137 T~~~~~~~~i~~~~s~ed~----~~~l~~ak~aGi~v~~g~I--iGl-gE---t~ed~~~~l~~l~~l~~d~v~~~~L~P  206 (350)
T PRK06267        137 TVNPKLHREICPGKPLDKI----KEMLLKAKDLGLKTGITII--LGL-GE---TEDDIEKLLNLIEELDLDRITFYSLNP  206 (350)
T ss_pred             cCCHHHHHhhCCCCCHHHH----HHHHHHHHHcCCeeeeeEE--EeC-CC---CHHHHHHHHHHHHHcCCCEEEEEeeeE
Confidence            2222233333224455544    4666799999999876555  552 22   367888889999999988653      


Q ss_pred             EccC----cCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE--eeccccCCCCCCCCCCCCC
Q 015894          267 LGDT----IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV--DSSVSGLGGCPYAKGASGN  340 (398)
Q Consensus       267 L~DT----~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V--D~Sv~GlGecp~a~graGN  340 (398)
                      .++|    .-..+|.++.+++..+|-.+|...|-.=.--+.+..++   .++.+||+.|  =-...+++-      ..|+
T Consensus       207 ~pGTp~~~~~~~s~~e~lr~ia~~Rl~lP~~~I~~~~~~~~l~~~~---~~~~aGaN~i~~~p~~g~ylt------~~g~  277 (350)
T PRK06267        207 QKGTIFENKPSVTTLEYMNWVSSVRLNFPKIKIITGTWVDKLTNIG---PLIMSGSNVITKFPLFSMYGT------KEGK  277 (350)
T ss_pred             CCCCcCCCCCCCCHHHHHHHHHHHHHHCCCCCcchhhHhHhcchhh---HHhhcCcceeeccchhccCcc------cCCC
Confidence            3344    23466789999999999888975552111101111111   2456898877  234455555      6778


Q ss_pred             ccHHHHHHHHHh
Q 015894          341 VATEDVVYMLNG  352 (398)
Q Consensus       341 a~lE~vv~~L~~  352 (398)
                      ..-+++-..=++
T Consensus       278 ~~~~~~~~~~~~  289 (350)
T PRK06267        278 RVENEIRWTGRE  289 (350)
T ss_pred             CHHHHHHHhhhh
Confidence            777777665343

>PLN02951 Molybderin biosynthesis protein CNX2

Probab=96.37  E-value=0.43  Score=48.85  Aligned_cols=164  Identities=16%  Similarity=0.139  Sum_probs=101.8

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCC-CCHHHHHHHHHhccCCcEEEEeCC----HhhHHHHHHcCCCEE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQL-ADAKDVMAAIQNVEGARFPVLTPN----LKGFEAAVAAGAKEV  189 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~-~D~~~v~~~i~~~~~~~l~~l~~n----~~~ie~a~~~Gv~~v  189 (398)
                      .++.++..++++.+.+.|+..|-++. ..    |.+ .|..++++.+++.++.....++.|    .+.++...++|++.|
T Consensus        89 ~ls~eei~~~i~~~~~~Gv~~I~~tG-GE----Pllr~dl~eli~~l~~~~gi~~i~itTNG~lL~~~~~~L~~aGld~V  163 (373)
T PLN02951         89 LLSQDEIVRLAGLFVAAGVDKIRLTG-GE----PTLRKDIEDICLQLSSLKGLKTLAMTTNGITLSRKLPRLKEAGLTSL  163 (373)
T ss_pred             cCCHHHHHHHHHHHHHCCCCEEEEEC-CC----CcchhhHHHHHHHHHhcCCCceEEEeeCcchHHHHHHHHHhCCCCeE
Confidence            48899999999999999999988764 12    222 245566777776666653444444    245677788999999


Q ss_pred             EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE--EE
Q 015894          190 AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSI-PVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE--IS  266 (398)
Q Consensus       190 ~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~-~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~--I~  266 (398)
                      .|.+...+......+.  ....++.+.+.++.+++.|+ .|.+++...   +   ..+.+++.++++.+.+.|++.  |.
T Consensus       164 nISLDsl~~e~~~~it--r~~~~~~vl~~I~~a~~~G~~~vkin~vv~---~---g~N~~Ei~~li~~a~~~gi~vr~ie  235 (373)
T PLN02951        164 NISLDTLVPAKFEFLT--RRKGHDRVLESIDTAIELGYNPVKVNCVVM---R---GFNDDEICDFVELTRDKPINVRFIE  235 (373)
T ss_pred             EEeeccCCHHHHHHHh--cCCCHHHHHHHHHHHHHcCCCcEEEEEEec---C---CCCHHHHHHHHHHHHhCCCeEEEEE
Confidence            9876543221111221  11124666777888889997 455433321   1   145678899999998988653  44


Q ss_pred             EccCcCcCC----HHHHHHHHHHHHhhCC
Q 015894          267 LGDTIGVGT----PGTVIPMLEAVLDAVP  291 (398)
Q Consensus       267 L~DT~G~~~----P~~v~~lv~~l~~~~p  291 (398)
                      +.-..|...    .....++++.+.+.+|
T Consensus       236 ~mP~~~~~~~~~~~~~~~ei~~~l~~~~~  264 (373)
T PLN02951        236 FMPFDGNVWNVKKLVPYAEMMDRIEQRFP  264 (373)
T ss_pred             cccCCCCccccccCCCHHHHHHHHHHhcC
Confidence            444433211    1235677777777665

>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water

Probab=96.34  E-value=0.71  Score=43.19  Aligned_cols=167  Identities=17%  Similarity=0.153  Sum_probs=105.6

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEE--EeCCHhhHHHHHHcCCCEEEEec
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPV--LTPNLKGFEAAVAAGAKEVAIFA  193 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~n~~~ie~a~~~Gv~~v~i~~  193 (398)
                      .+..+-.++++...+.|.+.|-+--.  +.+..  .+. +.++.+++..++.+.+  +.++...++.+.++|++.|.+..
T Consensus        28 ~~~~~~~~~A~~~~~~GA~~l~v~~~--~~~~~--g~~-~~~~~i~~~v~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~  102 (217)
T cd00331          28 REDFDPVEIAKAYEKAGAAAISVLTE--PKYFQ--GSL-EDLRAVREAVSLPVLRKDFIIDPYQIYEARAAGADAVLLIV  102 (217)
T ss_pred             CCCCCHHHHHHHHHHcCCCEEEEEeC--ccccC--CCH-HHHHHHHHhcCCCEEECCeecCHHHHHHHHHcCCCEEEEee
Confidence            44556789999999999998866321  10000  122 3445555444444443  23566689999999999999865


Q ss_pred             cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCc
Q 015894          194 SASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGV  273 (398)
Q Consensus       194 ~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~  273 (398)
                      ..-+              .+.++++++.++..|+.+.+.+.           +.+.    ++++.+.|++.+.+-...|.
T Consensus       103 ~~~~--------------~~~~~~~~~~~~~~g~~~~v~v~-----------~~~e----~~~~~~~g~~~i~~t~~~~~  153 (217)
T cd00331         103 AALD--------------DEQLKELYELARELGMEVLVEVH-----------DEEE----LERALALGAKIIGINNRDLK  153 (217)
T ss_pred             ccCC--------------HHHHHHHHHHHHHcCCeEEEEEC-----------CHHH----HHHHHHcCCCEEEEeCCCcc
Confidence            4211              14556778888889998743221           3333    45566789999988877777


Q ss_pred             CCHHHHHHHHHHHHhhCC-CCeEEEEeCCccchH-HHHHHHHHHhCCCEE
Q 015894          274 GTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQA-LSNILASLQMGISTV  321 (398)
Q Consensus       274 ~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA-~ANalaAl~aGa~~V  321 (398)
                      ..+..+ +++..+++.+| +.++-.=    .|-. ..++...+++|++.|
T Consensus       154 ~~~~~~-~~~~~l~~~~~~~~pvia~----gGI~s~edi~~~~~~Ga~gv  198 (217)
T cd00331         154 TFEVDL-NTTERLAPLIPKDVILVSE----SGISTPEDVKRLAEAGADAV  198 (217)
T ss_pred             ccCcCH-HHHHHHHHhCCCCCEEEEE----cCCCCHHHHHHHHHcCCCEE
Confidence            777666 66777777663 3343321    1222 367778888898855

IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.

>PRK09989 hypothetical protein; Provisional

Probab=96.32  E-value=0.3  Score=46.82  Aligned_cols=186  Identities=9%  Similarity=0.028  Sum_probs=100.8

Q ss_pred             HHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC-----------------C----Hh----
Q 015894          122 VELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP-----------------N----LK----  176 (398)
Q Consensus       122 ~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~-----------------n----~~----  176 (398)
                      .+.++.+.++|++.||+..+..       .+.+++.+.++. .+.++++++.                 .    .+    
T Consensus        18 ~~~l~~~~~~Gfd~VEl~~~~~-------~~~~~~~~~l~~-~Gl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~   89 (258)
T PRK09989         18 IERFAAARKAGFDAVEFLFPYD-------YSTLQIQKQLEQ-NHLTLALFNTAPGDINAGEWGLSALPGREHEARADIDL   89 (258)
T ss_pred             HHHHHHHHHcCCCEEEECCccc-------CCHHHHHHHHHH-cCCcEEEeccCCCccCCCCCcccCCCccHHHHHHHHHH
Confidence            4678889999999999965321       245566656552 2333333220                 0    11    


Q ss_pred             hHHHHHHcCCCEEEEeccCchHHHhhhcCCC----HHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH
Q 015894          177 GFEAAVAAGAKEVAIFASASESFSKSNINCT----IEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAY  252 (398)
Q Consensus       177 ~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s----~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~  252 (398)
                      -++.|.+.|++.|+++.+..+.      +.+    .+...+.++++.++|++.|+.+...-.-....+...-.+.+...+
T Consensus        90 ~i~~A~~lg~~~v~v~~g~~~~------~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~l~~~~~~~~~~~~~~~~~~  163 (258)
T PRK09989         90 ALEYALALNCEQVHVMAGVVPA------GEDAERYRAVFIDNLRYAADRFAPHGKRILVEALSPGVKPHYLFSSQYQALA  163 (258)
T ss_pred             HHHHHHHhCcCEEEECccCCCC------CCCHHHHHHHHHHHHHHHHHHHHhcCCEEEEEeCCCCCCCCCccCCHHHHHH
Confidence            2345567899988876542110      112    233567777888899999987642211000001000113333333


Q ss_pred             HHHHHHhCCCCEE-EEccCcCcCCHH-HHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCC
Q 015894          253 VSKQLYDMGCSEI-SLGDTIGVGTPG-TVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGG  330 (398)
Q Consensus       253 ~a~~l~~~Gad~I-~L~DT~G~~~P~-~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGe  330 (398)
                      +   +.+.+.+.+ ..-|+.-...+. .+.++++....+    -.++|.+|..+                         +
T Consensus       164 l---l~~v~~~~v~l~lD~~h~~~~~~~~~~~i~~~~~r----i~hvHi~D~~~-------------------------~  211 (258)
T PRK09989        164 I---VEEVARDNVFIQLDTFHAQKVDGNLTHLIRDYAGK----YAHVQIAGLPD-------------------------R  211 (258)
T ss_pred             H---HHHcCCCCeEEEeehHhHHHcCCCHHHHHHHhhhh----EEEEEECCCCC-------------------------C
Confidence            3   445555444 556775554442 344444443332    36788885211                         1


Q ss_pred             CCCCCCCCCCccHHHHHHHHHhCCCC
Q 015894          331 CPYAKGASGNVATEDVVYMLNGLGVR  356 (398)
Q Consensus       331 cp~a~graGNa~lE~vv~~L~~~Gi~  356 (398)
                      +  .+ +.|..+...++.+|++.|++
T Consensus       212 ~--~p-G~G~id~~~i~~al~~~Gy~  234 (258)
T PRK09989        212 H--EP-DDGEINYPWLFRLFDEVGYQ  234 (258)
T ss_pred             C--CC-CCCCcCHHHHHHHHHHcCCC
Confidence            1  12 36789999999999998875

>TIGR03470 HpnH hopanoid biosynthesis associated radical SAM protein HpnH

Probab=96.32  E-value=0.34  Score=48.46  Aligned_cols=157  Identities=14%  Similarity=0.110  Sum_probs=95.6

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCC----HhhHHHHHHcCCCEEE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPN----LKGFEAAVAAGAKEVA  190 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n----~~~ie~a~~~Gv~~v~  190 (398)
                      .++.++.   .+.+++.|+..|.++. ..|-..   .|..++++.++.. +.. ..++.|    .+.++...+.|...|.
T Consensus        58 ~ls~ee~---~~~i~e~g~~~V~i~G-GEPLL~---pdl~eiv~~~~~~-g~~-v~l~TNG~ll~~~~~~l~~~~~~~i~  128 (318)
T TIGR03470        58 RLSVEEC---LRAVDECGAPVVSIPG-GEPLLH---PEIDEIVRGLVAR-KKF-VYLCTNALLLEKKLDKFEPSPYLTFS  128 (318)
T ss_pred             CCCHHHH---HHHHHHcCCCEEEEeC-cccccc---ccHHHHHHHHHHc-CCe-EEEecCceehHHHHHHHHhCCCcEEE
Confidence            3555554   4556678998887753 222111   2455666666532 232 344444    1345666677888777


Q ss_pred             Eec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc-
Q 015894          191 IFA-SASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG-  268 (398)
Q Consensus       191 i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~-  268 (398)
                      |.+ +..+.|-+.   ...+..++.+.+.++.+++.|+.|.+...  +    ....+++++.++++.+.+.|++.+.+. 
T Consensus       129 VSLDG~~e~hd~~---~~~~g~f~~~l~~I~~l~~~G~~v~v~~t--v----~~~~n~~ei~~~~~~~~~lGv~~i~i~p  199 (318)
T TIGR03470       129 VHLDGLREHHDAS---VCREGVFDRAVEAIREAKARGFRVTTNTT--L----FNDTDPEEVAEFFDYLTDLGVDGMTISP  199 (318)
T ss_pred             EEEecCchhhchh---hcCCCcHHHHHHHHHHHHHCCCcEEEEEE--E----eCCCCHHHHHHHHHHHHHcCCCEEEEec
Confidence            753 333444322   12234577777888999999998764333  2    123578999999999999999988773 


Q ss_pred             --------cCcCcCCHHHHHHHHHHHHhh
Q 015894          269 --------DTIGVGTPGTVIPMLEAVLDA  289 (398)
Q Consensus       269 --------DT~G~~~P~~v~~lv~~l~~~  289 (398)
                              |.--.+.+.+..++++.+.+.
T Consensus       200 ~~~~~~a~~~~~~l~~~e~~~~~~~~~~~  228 (318)
T TIGR03470       200 GYAYEKAPDQDHFLGRRQTKKLFREVLSN  228 (318)
T ss_pred             CcccccccccccccCHHHHHHHHHHHHhh
Confidence                    112245567777777776653

The sequences represented by this model are members of the radical SAM superfamily of enzymes (pfam04055). These enzymes utilize an iron-sulfur redox cluster and S-adenosylmethionine to carry out diverse radical mediated reactions. The members of this clade are frequently found in the same locus as squalene-hopene cyclase (SHC, TIGR01507) and other genes associated with the biosynthesis of hopanoid natural products. The linkage between SHC and this radical SAM enzyme is strong; one is nearly always observed in the same genome where the other is found. A hopanoid biosynthesis locus was described in Zymomonas mobilis consisting of the genes HpnA-E and SHC (HpnF). Continuing past SHC are found a phosphorylase enzyme (ZMO0873, i.e. HpnG, TIGR03468) and this radical SAM enzyme (ZMO0874) which we name here HpnH. Granted, in Z. mobilis, HpnH is in a convergent orientation with respect to HpnA-G, but one gene beyond HpnH

>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional

Probab=96.30  E-value=0.17  Score=52.25  Aligned_cols=166  Identities=18%  Similarity=0.089  Sum_probs=101.9

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-cCCcEEEE--eCCHh-h-HHHHHHcCCCEEE
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-EGARFPVL--TPNLK-G-FEAAVAAGAKEVA  190 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~~~~l~~l--~~n~~-~-ie~a~~~Gv~~v~  190 (398)
                      .+.++-+++++.|...++..+|+|.+.--.+      -.++++.+++. ++..+.+-  +.+.. - ++.+.++|++.+.
T Consensus       182 ~~~~~A~~i~~~l~~~~~~~iKvG~~L~~~~------G~~iVk~Lr~~~~~~~I~~DLK~~Di~~~vv~~~a~aGAD~vT  255 (391)
T PRK13307        182 PDLEEVERVLSQLPKSDHIIIEAGTPLIKKF------GLEVISKIREVRPDAFIVADLKTLDTGNLEARMAADATADAVV  255 (391)
T ss_pred             CCHHHHHHHHHhcccccceEEEECHHHHHHh------CHHHHHHHHHhCCCCeEEEEecccChhhHHHHHHHhcCCCEEE
Confidence            4677778899999888788999997431111      12445566644 55444332  22221 1 6788899999998


Q ss_pred             EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc--
Q 015894          191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG--  268 (398)
Q Consensus       191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~--  268 (398)
                      +.....+               +.+..+++.+|++|+.+.+..+    .|.   ++.+.+    +.+ ..++|.|.+.  
T Consensus       256 VH~ea~~---------------~ti~~ai~~akk~GikvgVD~l----np~---tp~e~i----~~l-~~~vD~Vllht~  308 (391)
T PRK13307        256 ISGLAPI---------------STIEKAIHEAQKTGIYSILDML----NVE---DPVKLL----ESL-KVKPDVVELHRG  308 (391)
T ss_pred             EeccCCH---------------HHHHHHHHHHHHcCCEEEEEEc----CCC---CHHHHH----HHh-hCCCCEEEEccc
Confidence            8765432               3456778899999988764222    121   223333    233 5688888666  


Q ss_pred             -cCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894          269 -DTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       269 -DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                       |.-+...   ..+.++.+++..++.+|.+=    -|....|.-.++++||+++
T Consensus       309 vdp~~~~~---~~~kI~~ikk~~~~~~I~Vd----GGI~~eti~~l~~aGADiv  355 (391)
T PRK13307        309 IDEEGTEH---AWGNIKEIKKAGGKILVAVA----GGVRVENVEEALKAGADIL  355 (391)
T ss_pred             cCCCcccc---hHHHHHHHHHhCCCCcEEEE----CCcCHHHHHHHHHcCCCEE
Confidence             3323311   22466777765444455553    4777888888999999965

>PRK09197 fructose-bisphosphate aldolase; Provisional

Probab=96.29  E-value=0.85  Score=46.35  Aligned_cols=198  Identities=15%  Similarity=0.108  Sum_probs=122.6

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccC--CCC---HH------HHHHHHH---hccCCcEEEEe---CC--H
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQ--LAD---AK------DVMAAIQ---NVEGARFPVLT---PN--L  175 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~--~~D---~~------~v~~~i~---~~~~~~l~~l~---~n--~  175 (398)
                      .+..+....++++-.+...+.|=-.+...-++.+.  +.+   ..      .+...++   +--++.+....   .+  .
T Consensus        28 v~n~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPValHLDHg~~~~~  107 (350)
T PRK09197         28 VVGTDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLGAIAGAKHVHEVAEHYGVPVILHTDHCAKKLL  107 (350)
T ss_pred             eCCHHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCCCCcch
Confidence            57888888999999999999877655432222110  111   00      0112222   11233433332   34  4


Q ss_pred             hhHHHHHHcC-----------CCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCC-
Q 015894          176 KGFEAAVAAG-----------AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEG-  243 (398)
Q Consensus       176 ~~ie~a~~~G-----------v~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~-  243 (398)
                      +.+++++++|           ...|.+=.  |        ..+.+++++.-++++++|+..|+.|++.|-..-|.++.. 
T Consensus       108 ~~i~~ai~~g~~~v~~a~~~gftSVMiDg--S--------~lpfEeNI~~TkevVe~Ah~~GvsVEaELG~Igg~Ed~~~  177 (350)
T PRK09197        108 PWIDGLLDAGEKHFAAGGKPLFSSHMIDL--S--------EEPLEENIEICSKYLERMAKAGMTLEIELGVTGGEEDGVD  177 (350)
T ss_pred             HHHHHHHHhhHHHHHhcCCCCceeEEeeC--C--------CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeccCCCcCCcc
Confidence            5566666666           67675422  2        235788999999999999999999998888765544321 


Q ss_pred             ---------CCCHHHHHHHHHHHH-hCCCCE--EEEccCcCcCC---HHHHHHHHHHHHhhC--------CCCeEEEEeC
Q 015894          244 ---------MVPPSKVAYVSKQLY-DMGCSE--ISLGDTIGVGT---PGTVIPMLEAVLDAV--------PVDKLAVHFH  300 (398)
Q Consensus       244 ---------r~~~~~l~~~a~~l~-~~Gad~--I~L~DT~G~~~---P~~v~~lv~~l~~~~--------p~~~l~~H~H  300 (398)
                               -++|+...+++++.- ..|+|.  |.+.-.=|.-.   |.==.++++.+++.+        |++||.+|+=
T Consensus       178 ~~~~~~~~~~TdPeeA~~Fv~~Tgv~~~~D~LAvaiGt~HG~Yk~~~p~Ld~e~L~~I~~~v~~~~~~~~~~vPLVLHGg  257 (350)
T PRK09197        178 NSHEDNSKLYTQPEDVLYAYEALGKISGRFTIAASFGNVHGVYKPGNVKLRPEILKDSQEYVSKKFGLPAKPFDFVFHGG  257 (350)
T ss_pred             ccccccccccCCHHHHHHHHHHhCCCCcceEEeeecccccCCcCCCCCccCHHHHHHHHHHHHHhhCCCCCCCCEEEeCC
Confidence                     378888777776431 123364  45555555543   333345566666655        2678888875


Q ss_pred             CccchHHHHHHHHHHhCCCEEeec
Q 015894          301 DTYGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       301 nd~GlA~ANalaAl~aGa~~VD~S  324 (398)
                      .  |..--....|++.|+.-|+..
T Consensus       258 S--Gipde~i~~ai~~GI~KINi~  279 (350)
T PRK09197        258 S--GSTLEEIREAVSYGVVKMNID  279 (350)
T ss_pred             C--CCCHHHHHHHHHCCCeeEEeC
Confidence            4  778888999999999866543

>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional

Probab=96.27  E-value=0.64  Score=44.31  Aligned_cols=175  Identities=16%  Similarity=0.134  Sum_probs=103.7

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-cCCcEEEE--eCCH-hhHHHHHHcCCCEEEE
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-EGARFPVL--TPNL-KGFEAAVAAGAKEVAI  191 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~~~~l~~l--~~n~-~~ie~a~~~Gv~~v~i  191 (398)
                      .+...-.+.++.|.+.|++.+=+-... ..++|++.--...++.+++. |+..+-+.  +.+. .-++.+.++|++.|.+
T Consensus        16 ~d~~~l~~~~~~l~~~~~~~~H~DimD-g~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i~~~~~~Gad~itv   94 (228)
T PTZ00170         16 ADFSKLADEAQDVLSGGADWLHVDVMD-GHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWVDDFAKAGASQFTF   94 (228)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEEeccc-CccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHHcCCCEEEE
Confidence            344455678888999999876663211 12334433333456666643 45555443  3343 4578889999999888


Q ss_pred             eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE----EE
Q 015894          192 FASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEI----SL  267 (398)
Q Consensus       192 ~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I----~L  267 (398)
                      .....+               ..+.++++.+|++|..+.+.+.     |   .++.+.+.++.+   .-.+|.|    .-
T Consensus        95 H~ea~~---------------~~~~~~l~~ik~~G~~~gval~-----p---~t~~e~l~~~l~---~~~vD~Vl~m~v~  148 (228)
T PTZ00170         95 HIEATE---------------DDPKAVARKIREAGMKVGVAIK-----P---KTPVEVLFPLID---TDLVDMVLVMTVE  148 (228)
T ss_pred             eccCCc---------------hHHHHHHHHHHHCCCeEEEEEC-----C---CCCHHHHHHHHc---cchhhhHHhhhcc
Confidence            654332               1145678888999988765444     2   235666655431   0011211    11


Q ss_pred             ccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894          268 GDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       268 ~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                      +...|...-....+.++.+++.++...|.+    |-|.-..|.-.+.++||+++
T Consensus       149 pG~~gq~~~~~~~~ki~~~~~~~~~~~I~V----dGGI~~~ti~~~~~aGad~i  198 (228)
T PTZ00170        149 PGFGGQSFMHDMMPKVRELRKRYPHLNIQV----DGGINLETIDIAADAGANVI  198 (228)
T ss_pred             cCCCCcEecHHHHHHHHHHHHhcccCeEEE----CCCCCHHHHHHHHHcCCCEE
Confidence            223344444455566778888776534443    66777889999999999977

>PRK01060 endonuclease IV; Provisional

Probab=96.26  E-value=1.2  Score=42.96  Aligned_cols=203  Identities=15%  Similarity=0.083  Sum_probs=100.3

Q ss_pred             HHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh-c--cCCc---EEEEeC--------CH-----------
Q 015894          121 KVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN-V--EGAR---FPVLTP--------NL-----------  175 (398)
Q Consensus       121 k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~-~--~~~~---l~~l~~--------n~-----------  175 (398)
                      -.+.++.+.++|++.||+.......|.+..-+.++ ++.+++ +  .+.+   +++..+        +.           
T Consensus        14 ~~~~l~~~~~~G~d~vEl~~~~p~~~~~~~~~~~~-~~~lk~~~~~~gl~~~~~~~h~~~~~nl~~~d~~~r~~s~~~~~   92 (281)
T PRK01060         14 LEGAVAEAAEIGANAFMIFTGNPQQWKRKPLEELN-IEAFKAACEKYGISPEDILVHAPYLINLGNPNKEILEKSRDFLI   92 (281)
T ss_pred             HHHHHHHHHHcCCCEEEEECCCCCCCcCCCCCHHH-HHHHHHHHHHcCCCCCceEEecceEecCCCCCHHHHHHHHHHHH
Confidence            35678899999999999964321112111112222 223331 1  2333   332221        11           


Q ss_pred             hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHH--HhCCCcEEEEEeeeecCCCCCCCCHHHHHHH
Q 015894          176 KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAA--RELSIPVRGYLSCVVGCPVEGMVPPSKVAYV  253 (398)
Q Consensus       176 ~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~a--k~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~  253 (398)
                      +.++.|.+.|++.|.+......      .....++.++++.+.++.+  ...|  |...+....+.....-.+++.+.++
T Consensus        93 ~~i~~A~~lga~~vv~h~G~~~------~~~~~~~~~~~~~e~l~~l~~~~~g--v~l~iEn~~~~~~~~~~~~~~~~~l  164 (281)
T PRK01060         93 QEIERCAALGAKLLVFHPGSHL------GDIDEEDCLARIAESLNEALDKTQG--VTIVLENTAGQGSELGRRFEELARI  164 (281)
T ss_pred             HHHHHHHHcCCCEEEEcCCcCC------CCCcHHHHHHHHHHHHHHHHhcCCC--CEEEEecCCCCCCcccCCHHHHHHH
Confidence            1245667789998777543210      0112334667666666654  2345  3333432111100011356666666


Q ss_pred             HHHHHhCCCCE-E-EEccCcCc----CCH-HHHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHHHHHhCCCEEeecc
Q 015894          254 SKQLYDMGCSE-I-SLGDTIGV----GTP-GTVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILASLQMGISTVDSSV  325 (398)
Q Consensus       254 a~~l~~~Gad~-I-~L~DT~G~----~~P-~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv  325 (398)
                      ++.+   +-+. + ..-||.=.    ..| ....++++.+.+..+ +--.++|+||+.+-.        ..+.+      
T Consensus       165 ~~~v---~~~~~vg~~lD~gH~~~~g~d~~~~~~~~~~~~~~~~~~~~i~~vHl~D~~~~~--------~~~~d------  227 (281)
T PRK01060        165 IDGV---EDKSRVGVCLDTCHAFAAGYDLREDFEGVLAEFDRIVGLDRLKVMHLNDSKNEF--------GSRKD------  227 (281)
T ss_pred             HHhc---CCcccEEEEEeHHhHhhcCCChHHHHHHHHHHHHHhhChhheeEEEEecCCCcc--------cCCCC------
Confidence            6544   2222 2 22344311    122 344467777766544 334788999987521        00111      


Q ss_pred             ccCCCCCCCCCCCCCccHHHHHHHHHhCCC
Q 015894          326 SGLGGCPYAKGASGNVATEDVVYMLNGLGV  355 (398)
Q Consensus       326 ~GlGecp~a~graGNa~lE~vv~~L~~~Gi  355 (398)
                           +...+ +.|+.+.+.++..|++.|+
T Consensus       228 -----~H~~~-G~G~id~~~~~~~L~~~~y  251 (281)
T PRK01060        228 -----RHANL-GEGTIGFDALRYIVHDPRF  251 (281)
T ss_pred             -----cccCC-cCCcCCHHHHHHHHhCccc
Confidence                 11122 3678999999999998665

>TIGR00510 lipA lipoate synthase

Probab=96.23  E-value=0.11  Score=51.92  Aligned_cols=141  Identities=17%  Similarity=0.231  Sum_probs=95.6

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccC--CCCHHHHHHHHHh-ccCCcEEEEeCC----HhhHHHHHHcCCCE
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQ--LADAKDVMAAIQN-VEGARFPVLTPN----LKGFEAAVAAGAKE  188 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~--~~D~~~v~~~i~~-~~~~~l~~l~~n----~~~ie~a~~~Gv~~  188 (398)
                      .+.++.++.++.+.+.|+..|-+++-..+++ +.  ..+..++++.+++ .|++++.++++.    .+.++...++|.+.
T Consensus        91 ~~~eei~~~a~~~~~~GlkevvLTsv~~ddl-~d~g~~~l~~li~~I~~~~p~i~Ievl~~d~~g~~e~l~~l~~aG~dv  169 (302)
T TIGR00510        91 PDPEEPAKLAETIKDMGLKYVVITSVDRDDL-EDGGASHLAECIEAIREKLPNIKIETLVPDFRGNIAALDILLDAPPDV  169 (302)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEeecCCCc-ccccHHHHHHHHHHHHhcCCCCEEEEeCCcccCCHHHHHHHHHcCchh
Confidence            4678889999999999999998886543322 11  1123455556654 477777777753    44677888999997


Q ss_pred             EEEeccCchHHHhhhc--CCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE
Q 015894          189 VAIFASASESFSKSNI--NCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE  264 (398)
Q Consensus       189 v~i~~~~Sd~~~~~~~--~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~  264 (398)
                      +...+-.++... ..+  +.+.++    ..++++.+++.  |+.+...++.-||   +   +.+++.+..+.+.+.|++.
T Consensus       170 ~~hnlEt~~~l~-~~vrr~~t~e~----~Le~l~~ak~~~pgi~~~TgiIVGlG---E---Teee~~etl~~Lrelg~d~  238 (302)
T TIGR00510       170 YNHNLETVERLT-PFVRPGATYRW----SLKLLERAKEYLPNLPTKSGIMVGLG---E---TNEEIKQTLKDLRDHGVTM  238 (302)
T ss_pred             hcccccchHHHH-HHhCCCCCHHH----HHHHHHHHHHhCCCCeecceEEEECC---C---CHHHHHHHHHHHHhcCCCE
Confidence            776554444322 223  334444    44667888887  7888777774442   2   5688888999999999999


Q ss_pred             EEEc
Q 015894          265 ISLG  268 (398)
Q Consensus       265 I~L~  268 (398)
                      +.+.
T Consensus       239 v~ig  242 (302)
T TIGR00510       239 VTLG  242 (302)
T ss_pred             EEee
Confidence            8774

The family shows strong sequence conservation.

>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase

Probab=96.22  E-value=0.55  Score=46.48  Aligned_cols=211  Identities=13%  Similarity=0.075  Sum_probs=125.3

Q ss_pred             HHHHHhc---------CCCEEEEecCC--CCCcccC--CCCHHHHHHHHHhcc-CCcEEEEeC-----CH----hhHHHH
Q 015894          125 IKLLVSS---------GLAVVEATSFV--SPKWVPQ--LADAKDVMAAIQNVE-GARFPVLTP-----NL----KGFEAA  181 (398)
Q Consensus       125 a~~L~~a---------Gv~~IEvG~~~--~~~~~p~--~~D~~~v~~~i~~~~-~~~l~~l~~-----n~----~~ie~a  181 (398)
                      ++...++         |++.|=+++..  .....|.  +-+.++++..++.+. -+.+.+++-     +.    +-++..
T Consensus        22 A~~~e~~~~~~~~~~~Gf~ai~~ss~~~a~s~G~pD~~~~~~~e~~~~~~~I~~a~~~Pv~~D~d~Gg~~~~v~r~V~~l  101 (285)
T TIGR02320        22 ALIAEEARVEVGGESLGFDGIWSSSLTDSTSRGVPDIEEASWTQRLDVVEFMFDVTTKPIILDGDTGGNFEHFRRLVRKL  101 (285)
T ss_pred             HHHHHHhhhcccCcCCCcCEEEechHHHHHHCCCCCcCcCCHHHHHHHHHHHHhhcCCCEEEecCCCCCHHHHHHHHHHH
Confidence            4556677         99998887532  1122232  235677777776542 223333331     22    236677


Q ss_pred             HHcCCCEEEEeccCchHHH---hhh---cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC--CCCCHHHHHHH
Q 015894          182 VAAGAKEVAIFASASESFS---KSN---INCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE--GMVPPSKVAYV  253 (398)
Q Consensus       182 ~~~Gv~~v~i~~~~Sd~~~---~~~---~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~--~r~~~~~l~~~  253 (398)
                      .++|+..|.|-+.+.+-..   ..+   .-.+.++..++++.+++...  +..+.  |..=.   |+  .....+...+-
T Consensus       102 ~~aGvaGi~iEDq~~pk~cg~~~~~~~~~l~s~ee~~~kI~Aa~~a~~--~~~~~--IiART---Da~~~~~~~~eAi~R  174 (285)
T TIGR02320       102 ERRGVSAVCIEDKLGLKKNSLFGNDVAQPQASVEEFCGKIRAGKDAQT--TEDFM--IIARV---ESLILGKGMEDALKR  174 (285)
T ss_pred             HHcCCeEEEEeccCCCccccccCCCCcccccCHHHHHHHHHHHHHhcc--CCCeE--EEEec---ccccccCCHHHHHHH
Confidence            8899999999776533210   000   12367777777755544422  33322  11100   11  11246777788


Q ss_pred             HHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCC
Q 015894          254 SKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPY  333 (398)
Q Consensus       254 a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~  333 (398)
                      ++...++|||.|.+.  .+..++.++.++++.+...+|+.|+-+.. ...+.-  ..-.--++|+++|-.....+     
T Consensus       175 a~ay~eAGAD~ifv~--~~~~~~~ei~~~~~~~~~~~p~~pl~~~~-~~~~~~--~~~eL~~lG~~~v~~~~~~~-----  244 (285)
T TIGR02320       175 AEAYAEAGADGIMIH--SRKKDPDEILEFARRFRNHYPRTPLVIVP-TSYYTT--PTDEFRDAGISVVIYANHLL-----  244 (285)
T ss_pred             HHHHHHcCCCEEEec--CCCCCHHHHHHHHHHhhhhCCCCCEEEec-CCCCCC--CHHHHHHcCCCEEEEhHHHH-----
Confidence            999999999999997  34678999999999998878877775433 222322  23344468999876544433     


Q ss_pred             CCCCCCCccHHHHHHHHHhCCC
Q 015894          334 AKGASGNVATEDVVYMLNGLGV  355 (398)
Q Consensus       334 a~graGNa~lE~vv~~L~~~Gi  355 (398)
                         ++-...+++++..+.+.|.
T Consensus       245 ---~aa~~a~~~~~~~~~~~g~  263 (285)
T TIGR02320       245 ---RAAYAAMQQVAERILEHGR  263 (285)
T ss_pred             ---HHHHHHHHHHHHHHHHcCC
Confidence               4556677777777776553

A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.

>PRK05481 lipoyl synthase; Provisional

Probab=96.21  E-value=0.22  Score=49.21  Aligned_cols=143  Identities=17%  Similarity=0.202  Sum_probs=97.5

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccC--CCCHHHHHHHHHh-ccCCcEEEEeCC----HhhHHHHHHcCCC
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQ--LADAKDVMAAIQN-VEGARFPVLTPN----LKGFEAAVAAGAK  187 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~--~~D~~~v~~~i~~-~~~~~l~~l~~n----~~~ie~a~~~Gv~  187 (398)
                      .++.++.++.++.+.+.|++.|-+......+. |.  .....++++.+++ .|++++..+.+.    .+.+....++|++
T Consensus        79 s~~~eeI~~ea~~l~~~G~kEI~L~gg~~~d~-~~~~~~~l~~Ll~~I~~~~p~irI~~l~~~~~~~~e~L~~l~~ag~~  157 (289)
T PRK05481         79 PLDPDEPERVAEAVARMGLKYVVITSVDRDDL-PDGGAQHFAETIRAIRELNPGTTIEVLIPDFRGRMDALLTVLDARPD  157 (289)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEEEeeCCCc-ccccHHHHHHHHHHHHhhCCCcEEEEEccCCCCCHHHHHHHHhcCcc
Confidence            48999999999999999999998875432110 10  1123455555664 567777777653    4678888899998


Q ss_pred             EEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE
Q 015894          188 EVAIFASASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEI  265 (398)
Q Consensus       188 ~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I  265 (398)
                      .+....-.|+.. ...++.  ....+...++++.+++.  |+.+...++.-|     +. +.+...+..+.+.+.|.+.+
T Consensus       158 i~~~~~ets~~v-lk~m~r--~~t~e~~le~i~~ar~~~pgi~~~t~~IvGf-----GE-T~ed~~~tl~~lrel~~d~v  228 (289)
T PRK05481        158 VFNHNLETVPRL-YKRVRP--GADYERSLELLKRAKELHPGIPTKSGLMVGL-----GE-TDEEVLEVMDDLRAAGVDIL  228 (289)
T ss_pred             eeeccccChHHH-HHHhCC--CCCHHHHHHHHHHHHHhCCCCeEeeeeEEEC-----CC-CHHHHHHHHHHHHhcCCCEE
Confidence            887765555432 233432  12334455677899999  999987777433     22 56888888889999999887


Q ss_pred             EE
Q 015894          266 SL  267 (398)
Q Consensus       266 ~L  267 (398)
                      .+
T Consensus       229 ~i  230 (289)
T PRK05481        229 TI  230 (289)
T ss_pred             EE
Confidence            66

>PRK08005 epimerase; Validated

Probab=96.14  E-value=0.48  Score=44.87  Aligned_cols=167  Identities=13%  Similarity=0.100  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHhcCCCEEEE----ecCCCCCcccCCCCHHHHHHHHHhccCCcEEE--EeCCH-hhHHHHHHcCCCEEEE
Q 015894          119 VVKVELIKLLVSSGLAVVEA----TSFVSPKWVPQLADAKDVMAAIQNVEGARFPV--LTPNL-KGFEAAVAAGAKEVAI  191 (398)
Q Consensus       119 ~~k~~ia~~L~~aGv~~IEv----G~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~n~-~~ie~a~~~Gv~~v~i  191 (398)
                      ..-.+-++.|.++|++.+=+    |.|+     |++.=-...++.+++..+..+-+  ++.+. +-++..+++|++.|.+
T Consensus        13 ~~l~~el~~l~~~g~d~lHiDvMDG~FV-----PN~tfG~~~i~~l~~~t~~~~DvHLMv~~P~~~i~~~~~~gad~It~   87 (210)
T PRK08005         13 LRYAEALTALHDAPLGSLHLDIEDTSFI-----NNITFGMKTIQAVAQQTRHPLSFHLMVSSPQRWLPWLAAIRPGWIFI   87 (210)
T ss_pred             HHHHHHHHHHHHCCCCEEEEeccCCCcC-----CccccCHHHHHHHHhcCCCCeEEEeccCCHHHHHHHHHHhCCCEEEE
Confidence            44456778899999997655    4554     43332234566777655544444  44554 4578889999998887


Q ss_pred             eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEE----E
Q 015894          192 FASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEIS----L  267 (398)
Q Consensus       192 ~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~----L  267 (398)
                      ..-+.                ....++++++|++|..+...+.     |.   ++.+.+.+++..     +|.|-    =
T Consensus        88 H~Ea~----------------~~~~~~l~~Ik~~G~k~GlAln-----P~---Tp~~~i~~~l~~-----vD~VlvMsV~  138 (210)
T PRK08005         88 HAESV----------------QNPSEILADIRAIGAKAGLALN-----PA---TPLLPYRYLALQ-----LDALMIMTSE  138 (210)
T ss_pred             cccCc----------------cCHHHHHHHHHHcCCcEEEEEC-----CC---CCHHHHHHHHHh-----cCEEEEEEec
Confidence            54321                2345678889999999875554     32   467777766542     33322    2


Q ss_pred             ccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          268 GDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       268 ~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      +.-.|...=..+.+-|+.+++..+...|++    |=|.-..|+-...++||+.+=+
T Consensus       139 PGf~GQ~f~~~~~~KI~~l~~~~~~~~I~V----DGGI~~~~i~~l~~aGad~~V~  190 (210)
T PRK08005        139 PDGRGQQFIAAMCEKVSQSREHFPAAECWA----DGGITLRAARLLAAAGAQHLVI  190 (210)
T ss_pred             CCCccceecHHHHHHHHHHHHhcccCCEEE----ECCCCHHHHHHHHHCCCCEEEE
Confidence            344555555667777888887766433444    6788889999999999996633

>PRK13753 dihydropteroate synthase; Provisional

Probab=96.12  E-value=1.6  Score=43.12  Aligned_cols=153  Identities=12%  Similarity=0.088  Sum_probs=89.2

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCCEEEEecCCC-CCcccCCCCH-HHHH---HHHHhcc--CCcEEEEeCCHhhHHHHHHcC
Q 015894          113 KNIVPAVVKVELIKLLVSSGLAVVEATSFVS-PKWVPQLADA-KDVM---AAIQNVE--GARFPVLTPNLKGFEAAVAAG  185 (398)
Q Consensus       113 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~-~~~~p~~~D~-~~v~---~~i~~~~--~~~l~~l~~n~~~ie~a~~~G  185 (398)
                      |..++.+..++-+..+.+.|.+.|++|.-.. |..-|  -++ +|+.   ..++.+.  +..+++=+.+.+-++.|+++|
T Consensus        19 g~~~~~d~a~~~a~~m~~~GAdIIDIGgeSTrPga~~--vs~eeE~~Rv~pvI~~l~~~~~~ISIDT~~~~va~~al~aG   96 (279)
T PRK13753         19 SRRLDPAGAVTAAIEMLRVGSDVVDVGPAASHPDARP--VSPADEIRRIAPLLDALSDQMHRVSIDSFQPETQRYALKRG   96 (279)
T ss_pred             CCCCCHHHHHHHHHHHHHCCCcEEEECCCCCCCCCCc--CCHHHHHHHHHHHHHHHHhCCCcEEEECCCHHHHHHHHHcC
Confidence            3347889999999999999999999997554 43221  122 3333   2333332  334443345677789999999


Q ss_pred             CCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCC----CCC--CC-CH-----HHHHHH
Q 015894          186 AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCP----VEG--MV-PP-----SKVAYV  253 (398)
Q Consensus       186 v~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~----~~~--r~-~~-----~~l~~~  253 (398)
                      ++.|.=....++                  ..+.+.+.+.+..+.  +|..-|.+    ...  .+ ++     +++.+-
T Consensus        97 adiINDVsg~~d------------------~~~~~vva~~~~~vV--lmH~~~~~~~~~~~~~~~~~dv~~ev~~~l~~~  156 (279)
T PRK13753         97 VGYLNDIQGFPD------------------PALYPDIAEADCRLV--VMHSAQRDGIATRTGHLRPEDALDEIVRFFEAR  156 (279)
T ss_pred             CCEEEeCCCCCc------------------hHHHHHHHHcCCCEE--EEecCCCCCCCCcccCCCcchHHHHHHHHHHHH
Confidence            997654322211                  122334446666654  55543211    111  11 11     244455


Q ss_pred             HHHHHhCCC--CEEEEccCcCcC---CHHHHHHHHHHHH
Q 015894          254 SKQLYDMGC--SEISLGDTIGVG---TPGTVIPMLEAVL  287 (398)
Q Consensus       254 a~~l~~~Ga--d~I~L~DT~G~~---~P~~v~~lv~~l~  287 (398)
                      ++.+.++|+  +.|.|==-.|.+   ++++-.++++.+.
T Consensus       157 i~~~~~~Gi~~~~IilDPGiGF~k~k~~~~n~~ll~~l~  195 (279)
T PRK13753        157 VSALRRSGVAADRLILDPGMGFFLSPAPETSLHVLSNLQ  195 (279)
T ss_pred             HHHHHHcCCChhhEEEeCCCCCCCCCChHHHHHHHHhHH
Confidence            666778898  467776677753   6777777777654

>PRK09722 allulose-6-phosphate 3-epimerase; Provisional

Probab=96.09  E-value=0.23  Score=47.56  Aligned_cols=166  Identities=13%  Similarity=0.129  Sum_probs=103.7

Q ss_pred             HHHHHHHhcCCCEEEE----ecCCCCCcccCCCCHHHHHHHHHhccCCcEE--EEeCCH-hhHHHHHHcCCCEEEEeccC
Q 015894          123 ELIKLLVSSGLAVVEA----TSFVSPKWVPQLADAKDVMAAIQNVEGARFP--VLTPNL-KGFEAAVAAGAKEVAIFASA  195 (398)
Q Consensus       123 ~ia~~L~~aGv~~IEv----G~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~--~l~~n~-~~ie~a~~~Gv~~v~i~~~~  195 (398)
                      +-++.|.+ |++.+=+    |.|+     |++.=...+++.+++.++..+-  .++.+. +-++..+++|++.|.+..-+
T Consensus        19 ~el~~l~~-g~d~lH~DiMDG~FV-----PN~tfg~~~i~~ir~~t~~~~DvHLMv~~P~~~i~~~~~aGad~it~H~Ea   92 (229)
T PRK09722         19 EQIEFLNS-KADYFHIDIMDGHFV-----PNLTLSPFFVSQVKKLASKPLDVHLMVTDPQDYIDQLADAGADFITLHPET   92 (229)
T ss_pred             HHHHHHHh-CCCEEEEecccCccC-----CCcccCHHHHHHHHhcCCCCeEEEEEecCHHHHHHHHHHcCCCEEEECccC
Confidence            34456666 8887655    4444     4333223466777765554443  455565 45788899999988875432


Q ss_pred             chHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----ccCc
Q 015894          196 SESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL----GDTI  271 (398)
Q Consensus       196 Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L----~DT~  271 (398)
                      ++               ....++++++|++|.++...|.     |.   ++.+.+.++...+     |.|-+    +.-.
T Consensus        93 ~~---------------~~~~~~i~~Ik~~G~kaGlaln-----P~---T~~~~l~~~l~~v-----D~VLvMsV~PGf~  144 (229)
T PRK09722         93 IN---------------GQAFRLIDEIRRAGMKVGLVLN-----PE---TPVESIKYYIHLL-----DKITVMTVDPGFA  144 (229)
T ss_pred             Cc---------------chHHHHHHHHHHcCCCEEEEeC-----CC---CCHHHHHHHHHhc-----CEEEEEEEcCCCc
Confidence            21               1234677899999999875554     32   4677777766532     33211    3344


Q ss_pred             CcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894          272 GVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD  322 (398)
Q Consensus       272 G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD  322 (398)
                      |...=..+.+.|+.+|+..+.-.+.+..-=|=|.-..|+-...++||+.+=
T Consensus       145 GQ~fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~~i~~~~~aGad~~V  195 (229)
T PRK09722        145 GQPFIPEMLDKIAELKALRERNGLEYLIEVDGSCNQKTYEKLMEAGADVFI  195 (229)
T ss_pred             chhccHHHHHHHHHHHHHHHhcCCCeEEEEECCCCHHHHHHHHHcCCCEEE
Confidence            555556666677777765543233444555778888999999999999774

>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit

Probab=96.08  E-value=1  Score=43.45  Aligned_cols=205  Identities=15%  Similarity=0.083  Sum_probs=114.0

Q ss_pred             HHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEE--eCCHhhHHHHHHcCCCEEEEeccCc
Q 015894          119 VVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVL--TPNLKGFEAAVAAGAKEVAIFASAS  196 (398)
Q Consensus       119 ~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l--~~n~~~ie~a~~~Gv~~v~i~~~~S  196 (398)
                      .+-+++++.+.+.|++.+=+.-......  ......+++..+.+..+..+.+-  +++.++++.++..|++.|-+-..  
T Consensus        30 ~dp~~~a~~~~~~G~~~l~v~Dl~~~~~--~~~~n~~~i~~i~~~~~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt~--  105 (254)
T TIGR00735        30 GDPVELAQRYDEEGADELVFLDITASSE--GRTTMIDVVERTAETVFIPLTVGGGIKSIEDVDKLLRAGADKVSINTA--  105 (254)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEcCCcccc--cChhhHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCCEEEEChh--
Confidence            3567899999999999887764322110  00112234444443334444433  47899999999999998866322  


Q ss_pred             hHHHhhhcCCCHHHHHHHHHHHHHHHHhCC-CcEEEEEeeeecCCC-----------C-CCCCHHHHHHHHHHHHhCCCC
Q 015894          197 ESFSKSNINCTIEDSLIRYRDVALAARELS-IPVRGYLSCVVGCPV-----------E-GMVPPSKVAYVSKQLYDMGCS  263 (398)
Q Consensus       197 d~~~~~~~~~s~~~~l~~~~~~v~~ak~~G-~~v~~~l~~~fg~~~-----------~-~r~~~~~l~~~a~~l~~~Gad  263 (398)
                       .+          +..+.+.+   .++..| -.+.+.+-+ .+.+.           . ...+.....++++.+.++|++
T Consensus       106 -~~----------~~p~~~~~---~~~~~~~~~iv~slD~-~~g~~~~~~~~~v~i~gw~~~~~~~~~~~~~~l~~~G~~  170 (254)
T TIGR00735       106 -AV----------KNPELIYE---LADRFGSQCIVVAIDA-KRVYVNSYCWYEVYIYGGRESTGLDAVEWAKEVEKLGAG  170 (254)
T ss_pred             -Hh----------hChHHHHH---HHHHcCCCCEEEEEEe-ccCCCCCCccEEEEEeCCcccCCCCHHHHHHHHHHcCCC
Confidence             11          11122222   233344 233333321 00000           0 012345567888899999999


Q ss_pred             EEEE--ccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhC-CCEE-eeccccCCCCCCCCCCCC
Q 015894          264 EISL--GDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMG-ISTV-DSSVSGLGGCPYAKGASG  339 (398)
Q Consensus       264 ~I~L--~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aG-a~~V-D~Sv~GlGecp~a~graG  339 (398)
                      .|.+  -|..|.+.... .++++.+++..+ +|+-..+=-.-   ..-+..++..| |+.| -++..          -.|
T Consensus       171 ~iivt~i~~~g~~~g~~-~~~~~~i~~~~~-ipvia~GGi~s---~~di~~~~~~g~~dgv~~g~a~----------~~~  235 (254)
T TIGR00735       171 EILLTSMDKDGTKSGYD-LELTKAVSEAVK-IPVIASGGAGK---PEHFYEAFTKGKADAALAASVF----------HYR  235 (254)
T ss_pred             EEEEeCcCcccCCCCCC-HHHHHHHHHhCC-CCEEEeCCCCC---HHHHHHHHHcCCcceeeEhHHH----------hCC
Confidence            9988  55555544433 456777777654 45665542211   12233445556 7764 22222          245


Q ss_pred             CccHHHHHHHHHhCCCCC
Q 015894          340 NVATEDVVYMLNGLGVRT  357 (398)
Q Consensus       340 Na~lE~vv~~L~~~Gi~t  357 (398)
                      ..+++++...|++.||..
T Consensus       236 ~~~~~~~~~~~~~~gi~~  253 (254)
T TIGR00735       236 EITIGEVKEYLAERGIPV  253 (254)
T ss_pred             CCCHHHHHHHHHHCCCcc
Confidence            678999999999888753

>smart00518 AP2Ec AP endonuclease family 2

Probab=96.04  E-value=1.5  Score=42.08  Aligned_cols=201  Identities=14%  Similarity=0.130  Sum_probs=103.0

Q ss_pred             HHHHHHHhcCCCEEEEecCCCCCccc-CCC--CHHHHHHHHHhccCCcEEEEeC---C-----H-----------hhHHH
Q 015894          123 ELIKLLVSSGLAVVEATSFVSPKWVP-QLA--DAKDVMAAIQNVEGARFPVLTP---N-----L-----------KGFEA  180 (398)
Q Consensus       123 ~ia~~L~~aGv~~IEvG~~~~~~~~p-~~~--D~~~v~~~i~~~~~~~l~~l~~---n-----~-----------~~ie~  180 (398)
                      +.++.+.+.|++.+|+.......+.+ .+.  +.+++.+.+++ .++++++..+   |     .           +.++.
T Consensus        14 ~~~~~~~~~G~~~vel~~~~~~~~~~~~~~~~~~~~l~~~~~~-~gl~ls~h~p~~~nl~s~d~~~r~~~~~~l~~~i~~   92 (273)
T smart00518       14 KAFIEAVDIGARSFQLFLGNPRSWKGVRLSEETAEKFKEALKE-NNIDVSVHAPYLINLASPDKEKVEKSIERLIDEIKR   92 (273)
T ss_pred             HHHHHHHHcCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHH-cCCCEEEECCceecCCCCCHHHHHHHHHHHHHHHHH
Confidence            46677888899999986433212211 111  12333333332 2455554432   1     1           12456


Q ss_pred             HHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHh--CCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHH
Q 015894          181 AVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARE--LSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLY  258 (398)
Q Consensus       181 a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~--~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~  258 (398)
                      |.+.|++.|.+..+..       ...++++.++++.+.++.+-+  .|+.+  .+....+.+..--.+++.+.++++.+.
T Consensus        93 A~~lGa~~vv~h~g~~-------~~~~~e~~~~~~~~~l~~l~~~~~gv~l--~lEn~~~~~~~~~~~~~~~~~ll~~v~  163 (273)
T smart00518       93 CEELGIKALVFHPGSY-------LKQSKEEALNRIIESLNEVIDETKGVVI--LLETTAGKGSQIGSTFEDLKEIIDLIK  163 (273)
T ss_pred             HHHcCCCEEEEccccc-------cCCCHHHHHHHHHHHHHHHHhccCCcEE--EEeccCCCCCccCCCHHHHHHHHHhcC
Confidence            6778999887754321       123456666666555554433  44433  233211111111135677777766543


Q ss_pred             hCCCCEE-EEccCc-----Cc--CCHHHHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCC
Q 015894          259 DMGCSEI-SLGDTI-----GV--GTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLG  329 (398)
Q Consensus       259 ~~Gad~I-~L~DT~-----G~--~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlG  329 (398)
                      ..  +.+ ..-|+.     |.  .+|..+.++++.+.+.++ +-..++|+||+.|.          .|-         -+
T Consensus       164 ~~--~~~g~~lD~gH~~~~g~d~~~~~~~~~~i~~~~~~~g~~~I~~vHl~D~~~~----------~g~---------~~  222 (273)
T smart00518      164 EL--DRIGVCIDTCHIFAAGYDINTVEGFEKVLEEFENVLGLEYLKAIHLNDSKIE----------LGS---------GK  222 (273)
T ss_pred             CC--CCeEEEEEccchhhccCCCCCHHHHHHHHHHHHHHhCHHhhceEEeecCCCc----------cCC---------CC
Confidence            21  212 122332     21  247778888888776664 33489999998862          111         11


Q ss_pred             CCCCCCCCCCCccHHHHHHHHHhCCC
Q 015894          330 GCPYAKGASGNVATEDVVYMLNGLGV  355 (398)
Q Consensus       330 ecp~a~graGNa~lE~vv~~L~~~Gi  355 (398)
                      .+-.+. +.|..+.+.+...|+..++
T Consensus       223 d~H~~~-G~G~id~~~~~~~l~~~~~  247 (273)
T smart00518      223 DRHENL-GEGYIGFEPFRLLMADKRF  247 (273)
T ss_pred             ccccCC-CCCCCChHHHHHHhhChhh
Confidence            122222 2678999999888876433

These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites

>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]

Probab=96.04  E-value=0.75  Score=45.42  Aligned_cols=227  Identities=18%  Similarity=0.174  Sum_probs=145.6

Q ss_pred             ccCCCCC--CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH----hccCCcEEEEe---CCHhh
Q 015894          107 DGLQNEK--NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ----NVEGARFPVLT---PNLKG  177 (398)
Q Consensus       107 DG~Q~~~--~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~----~~~~~~l~~l~---~n~~~  177 (398)
                      ++.+..+  +....+....|+++-.+.+-+.|=-.+...-++..   -...+...++    ..+ +.+....   .+.++
T Consensus        15 e~~yAvpAfN~~nlE~~~AileaA~e~~sPvIiq~S~g~~~y~g---g~~~~~~~v~~~a~~~~-vPV~lHlDHg~~~~~   90 (286)
T COG0191          15 ENGYAVPAFNINNLETLQAILEAAEEEKSPVIIQFSEGAAKYAG---GADSLAHMVKALAEKYG-VPVALHLDHGASFED   90 (286)
T ss_pred             HcCCceeeeeecCHHHHHHHHHHHHHhCCCEEEEecccHHHHhc---hHHHHHHHHHHHHHHCC-CCEEEECCCCCCHHH
Confidence            3444443  34678888999999999999998887654333221   0223333333    223 4444433   36788


Q ss_pred             HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC--CC------CCHHH
Q 015894          178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE--GM------VPPSK  249 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~--~r------~~~~~  249 (398)
                      +..++++|...+.+=-|.          .+.+|.+...+++++.|+..|+.|++.|-..-|-++.  .-      ++|+.
T Consensus        91 ~~~ai~~GFsSvMiDgS~----------~~~eENi~~tkevv~~ah~~gvsVEaElG~~GG~Edg~~~~~~~~~~tdp~e  160 (286)
T COG0191          91 CKQAIRAGFSSVMIDGSH----------LPFEENIAITKEVVEFAHAYGVSVEAELGTLGGEEDGVVLYTDPADLTDPEE  160 (286)
T ss_pred             HHHHHhcCCceEEecCCc----------CCHHHHHHHHHHHHHHHHHcCCcEEEEeccccCccCCcccccchhhhCCHHH
Confidence            999999999988773332          2467899999999999999999999988876666662  22      33333


Q ss_pred             HHHHHHHHHhCCCCE--EEEccCcCcCCHHH---HHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894          250 VAYVSKQLYDMGCSE--ISLGDTIGVGTPGT---VIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       250 l~~~a~~l~~~Gad~--I~L~DT~G~~~P~~---v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S  324 (398)
                      .+++   ...-|+|.  +.|.-.=|.-.|..   =.++++.+++..+ +||.+|+=-  |........|++.|+.-|+..
T Consensus       161 a~~f---v~~tgiD~LA~aiGn~HG~Yk~~~p~L~~~~L~~i~~~~~-~PlVlHGgS--Gip~~eI~~aI~~GV~KvNi~  234 (286)
T COG0191         161 ALEF---VERTGIDALAAAIGNVHGVYKPGNPKLDFDRLKEIQEAVS-LPLVLHGGS--GIPDEEIREAIKLGVAKVNID  234 (286)
T ss_pred             HHHH---HhccCcceeeeeccccccCCCCCCCCCCHHHHHHHHHHhC-CCEEEeCCC--CCCHHHHHHHHHhCceEEeeC
Confidence            3333   33456875  45666666655422   2355677777666 678888765  999999999999999876543


Q ss_pred             cccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHH
Q 015894          325 VSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMI  366 (398)
Q Consensus       325 v~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~  366 (398)
                      --           .-.+.+..+-.++.+.  ...+|..+++.
T Consensus       235 Td-----------~~~A~~~avr~~~~~~--~k~~DpR~~l~  263 (286)
T COG0191         235 TD-----------LQLAFTAAVREYLAEN--PKEYDPRKYLK  263 (286)
T ss_pred             cH-----------HHHHHHHHHHHHHHhC--cccCCHHHHHH
Confidence            21           1134444454445443  13577765554

>COG1856 Uncharacterized homolog of biotin synthetase [Function unknown]

Probab=96.02  E-value=1.5  Score=41.98  Aligned_cols=214  Identities=14%  Similarity=0.097  Sum_probs=138.1

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEecCC-CCCcccCCCCHHHHHHHHHhccCCcEEEEeC--CHhhHHHHHHcCCCEEEE-e
Q 015894          117 PAVVKVELIKLLVSSGLAVVEATSFV-SPKWVPQLADAKDVMAAIQNVEGARFPVLTP--NLKGFEAAVAAGAKEVAI-F  192 (398)
Q Consensus       117 ~~~~k~~ia~~L~~aGv~~IEvG~~~-~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~--n~~~ie~a~~~Gv~~v~i-~  192 (398)
                      ++..-++-...|.+-|+..+-+.... +...+|- .+..+.+..+++-.+..+.+.+-  ...+++...+.++|.+-+ |
T Consensus        40 t~~~l~k~~~el~kkGy~g~llSGGm~srg~VPl-~kf~d~lK~lke~~~l~inaHvGfvdE~~~eklk~~~vdvvsLDf  118 (275)
T COG1856          40 TTKSLLKRCMELEKKGYEGCLLSGGMDSRGKVPL-WKFKDELKALKERTGLLINAHVGFVDESDLEKLKEELVDVVSLDF  118 (275)
T ss_pred             chHHHHHHHHHHHhcCceeEEEeCCcCCCCCccH-HHHHHHHHHHHHhhCeEEEEEeeeccHHHHHHHHHhcCcEEEEee
Confidence            44444455567889999988774332 3333452 12233333444444566666652  466889999999998877 5


Q ss_pred             ccCchHHHhhhc--CCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE---
Q 015894          193 ASASESFSKSNI--NCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL---  267 (398)
Q Consensus       193 ~~~Sd~~~~~~~--~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L---  267 (398)
                      ++-+|. ++..+  .+|.++    +.+.+++.++.|+.|..++..-.   +.+...-|+  +.++.+.++..|.+.|   
T Consensus       119 vgDn~v-Ik~vy~l~ksv~d----yl~~l~~L~e~~irvvpHitiGL---~~gki~~e~--kaIdiL~~~~~DalVl~vl  188 (275)
T COG1856         119 VGDNDV-IKRVYKLPKSVED----YLRSLLLLKENGIRVVPHITIGL---DFGKIHGEF--KAIDILVNYEPDALVLVVL  188 (275)
T ss_pred             cCChHH-HHHHHcCCccHHH----HHHHHHHHHHcCceeceeEEEEe---ccCcccchH--HHHHHHhcCCCCeEEEEEE
Confidence            555554 33333  444444    44566888999999887776322   234444433  5577788898887544   


Q ss_pred             ccCcCc----C---CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHH-HHHHHHHhCCCEEeeccccCCCCCCCCCCCC
Q 015894          268 GDTIGV----G---TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALS-NILASLQMGISTVDSSVSGLGGCPYAKGASG  339 (398)
Q Consensus       268 ~DT~G~----~---~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~A-NalaAl~aGa~~VD~Sv~GlGecp~a~graG  339 (398)
                      -=|.|.    .   +|+++...++..|+.+|+ |+.+-|---+|---- ---.|+.+|++.|---..|.+|      -++
T Consensus       189 iPtpGtkm~~~~pp~~eE~i~v~~~AR~~f~~-pv~iGCmrP~Ge~rvk~d~~av~~gVd~It~P~~~t~e------~ak  261 (275)
T COG1856         189 IPTPGTKMGNSPPPPVEEAIKVVKYARKKFPN-PVSIGCMRPRGEWRVKLDKEAVLAGVDRITFPPRGTIE------YAK  261 (275)
T ss_pred             ecCCchhccCCCCcCHHHHHHHHHHHHHhCCC-CeeEeecCcCchhHHHHHHHHHHcCCceeecCCcccee------hhh
Confidence            445553    2   247777788888889998 788878777776533 3346889999999999999999      666


Q ss_pred             CccHHHHHH
Q 015894          340 NVATEDVVY  348 (398)
Q Consensus       340 Na~lE~vv~  348 (398)
                      -...+.+..
T Consensus       262 ~~r~i~~~~  270 (275)
T COG1856         262 SIRDIEIIY  270 (275)
T ss_pred             hhhhhhhhh
Confidence            655555544

>PRK07226 fructose-bisphosphate aldolase; Provisional

Probab=96.02  E-value=0.38  Score=46.87  Aligned_cols=179  Identities=20%  Similarity=0.233  Sum_probs=108.0

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEE-------EeC--C----HhhHHHH
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPV-------LTP--N----LKGFEAA  181 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~-------l~~--n----~~~ie~a  181 (398)
                      ..+.++..++++...+.|++.+-+...    +++.      ..+.+.  .++.+.+       +.+  .    ...++.+
T Consensus        35 ~~~~~d~~~~~~~a~~~~~~av~v~~~----~~~~------~~~~~~--~~~~l~~~i~~~~~~~~~~~~~~~~~~ve~A  102 (267)
T PRK07226         35 IDGLVDIRDTVNKVAEGGADAVLMHKG----LARH------GHRGYG--RDVGLIVHLSASTSLSPDPNDKVLVGTVEEA  102 (267)
T ss_pred             CcCcCCHHHHHHHHHhcCCCEEEeCHh----HHhh------hccccC--CCCcEEEEEcCCCCCCCCCCcceeeecHHHH
Confidence            346667788999999999999888532    1111      000010  1221111       111  1    1357899


Q ss_pred             HHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCC
Q 015894          182 VAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMG  261 (398)
Q Consensus       182 ~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~G  261 (398)
                      ++.|++.|.+.......        +..+.++.+.++++.|++.|+.+-+ +.+..|...++..+++.+...++.+.++|
T Consensus       103 ~~~Gad~v~~~~~~g~~--------~~~~~~~~~~~v~~~~~~~g~pl~v-i~~~~g~~~e~~~~~~~i~~a~~~a~e~G  173 (267)
T PRK07226        103 IKLGADAVSVHVNVGSE--------TEAEMLEDLGEVAEECEEWGMPLLA-MMYPRGPGIKNEYDPEVVAHAARVAAELG  173 (267)
T ss_pred             HHcCCCEEEEEEecCCh--------hHHHHHHHHHHHHHHHHHcCCcEEE-EEecCCCccCCCccHHHHHHHHHHHHHHC
Confidence            99999988776543221        1346788888999999999998764 22222221223346778888888899999


Q ss_pred             CCEEEEccCcCcCCHHHHHHHHHHHHhh--CCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894          262 CSEISLGDTIGVGTPGTVIPMLEAVLDA--VPVDKLAVHFHDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       262 ad~I~L~DT~G~~~P~~v~~lv~~l~~~--~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                      +|.|-..=+ |  .+    ++++.+.+.  .|..-++=--.+|+-.++.+.-.++++||+.+
T Consensus       174 AD~vKt~~~-~--~~----~~l~~~~~~~~ipV~a~GGi~~~~~~~~l~~v~~~~~aGA~Gi  228 (267)
T PRK07226        174 ADIVKTNYT-G--DP----ESFREVVEGCPVPVVIAGGPKTDTDREFLEMVRDAMEAGAAGV  228 (267)
T ss_pred             CCEEeeCCC-C--CH----HHHHHHHHhCCCCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEE
Confidence            999866511 1  23    334444432  34322221222377788999999999999944

>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism

Probab=95.99  E-value=0.055  Score=51.55  Aligned_cols=188  Identities=18%  Similarity=0.175  Sum_probs=113.3

Q ss_pred             HHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC----------C-----HhhHHHHHHc
Q 015894          120 VKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP----------N-----LKGFEAAVAA  184 (398)
Q Consensus       120 ~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~----------n-----~~~ie~a~~~  184 (398)
                      +..++++...+.|++.|-+....    +      ......+.. .+.++..++.          .     ...++.|++.
T Consensus        20 ~~~~~~~~a~~~~~~av~v~p~~----~------~~~~~~~~~-~~~~~~~vi~fp~g~~~~~~k~~~~~~~~ve~A~~~   88 (236)
T PF01791_consen   20 DIKKLCREAIEYGFDAVCVTPGY----V------KPAAELLAG-SGVKVGLVIGFPFGTSTTEPKGYDQIVAEVEEAIRL   88 (236)
T ss_dssp             HHHHHHHHHHHHTSSEEEEEGGG----H------HHHHHHSTT-STSEEEEEESTTTSSSTHHHHTCEEEHHHHHHHHHT
T ss_pred             hHHHHHHHHHHhCCCEEEECHHH----H------HHHHHHhhc-cccccceEEEeCCCCCccccccccchHHHHHHHHHc
Confidence            67788888899999999886421    1      111111211 1235554442          1     2357889999


Q ss_pred             CCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE
Q 015894          185 GAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE  264 (398)
Q Consensus       185 Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~  264 (398)
                      |++.|.+.+........     ..++.++.+.++++.|++.|+++... ....+.+.....+++.+...++.+.++|+|.
T Consensus        89 GAd~vd~vi~~~~~~~~-----~~~~~~~~i~~v~~~~~~~gl~vIlE-~~l~~~~~~~~~~~~~I~~a~ria~e~GaD~  162 (236)
T PF01791_consen   89 GADEVDVVINYGALGSG-----NEDEVIEEIAAVVEECHKYGLKVILE-PYLRGEEVADEKKPDLIARAARIAAELGADF  162 (236)
T ss_dssp             T-SEEEEEEEHHHHHTT-----HHHHHHHHHHHHHHHHHTSEEEEEEE-ECECHHHBSSTTHHHHHHHHHHHHHHTT-SE
T ss_pred             CCceeeeeccccccccc-----cHHHHHHHHHHHHHHHhcCCcEEEEE-EecCchhhcccccHHHHHHHHHHHHHhCCCE
Confidence            99999987765332111     25678899999999999999987644 3322222222335667889999999999998


Q ss_pred             EEEccC-cCcCCHHHHHHHHHHHHhh-CCC-CeEEEE---eCCccchHHHHHHHHHHhCCCEEeec
Q 015894          265 ISLGDT-IGVGTPGTVIPMLEAVLDA-VPV-DKLAVH---FHDTYGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       265 I~L~DT-~G~~~P~~v~~lv~~l~~~-~p~-~~l~~H---~Hnd~GlA~ANalaAl~aGa~~VD~S  324 (398)
                      |-..=+ ....++.++..+-+.+... .|. +.|-+=   .+.++=-.+.-++..+++||+++=++
T Consensus       163 vKt~tg~~~~~t~~~~~~~~~~~~~~~~p~~~~Vk~sGGi~~~~~~~~l~~a~~~i~aGa~~~G~~  228 (236)
T PF01791_consen  163 VKTSTGKPVGATPEDVELMRKAVEAAPVPGKVGVKASGGIDAEDFLRTLEDALEFIEAGADRIGTS  228 (236)
T ss_dssp             EEEE-SSSSCSHHHHHHHHHHHHHTHSSTTTSEEEEESSSSHHHHHHSHHHHHHHHHTTHSEEEEE
T ss_pred             EEecCCccccccHHHHHHHHHHHHhcCCCcceEEEEeCCCChHHHHHHHHHHHHHHHcCChhHHHH
Confidence            765444 2455566666655555532 232 112222   22223344677788889999875444

2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....

>PLN02334 ribulose-phosphate 3-epimerase

Probab=95.97  E-value=1.5  Score=41.61  Aligned_cols=172  Identities=16%  Similarity=0.167  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEE--EeCCH-hhHHHHHHcCCCEEEEeccC
Q 015894          119 VVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPV--LTPNL-KGFEAAVAAGAKEVAIFASA  195 (398)
Q Consensus       119 ~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~n~-~~ie~a~~~Gv~~v~i~~~~  195 (398)
                      ..-.+.++.+.+.|++.|-+-.... .++|...-..+..+.+++.++..+.+  ++.+. .-++.+.++|++.|.+...-
T Consensus        20 ~~l~~~l~~~~~~g~~~ihld~~d~-~f~~~~~~g~~~~~~l~~~~~~~~~vhlmv~~p~d~~~~~~~~gad~v~vH~~q   98 (229)
T PLN02334         20 ANLAEEAKRVLDAGADWLHVDVMDG-HFVPNLTIGPPVVKALRKHTDAPLDCHLMVTNPEDYVPDFAKAGASIFTFHIEQ   98 (229)
T ss_pred             HHHHHHHHHHHHcCCCEEEEecccC-CcCCccccCHHHHHHHHhcCCCcEEEEeccCCHHHHHHHHHHcCCCEEEEeecc
Confidence            3445678889999999998843211 12333221124556666655544333  34443 45788899999999554431


Q ss_pred             -chHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCC-CCEEEE----cc
Q 015894          196 -SESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMG-CSEISL----GD  269 (398)
Q Consensus       196 -Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~G-ad~I~L----~D  269 (398)
                       .+               +...+.++.+++.|..+...+.     |.   ++.+.    ++.+.+.| +|.|.+    +.
T Consensus        99 ~~~---------------d~~~~~~~~i~~~g~~iGls~~-----~~---t~~~~----~~~~~~~~~~Dyi~~~~v~pg  151 (229)
T PLN02334         99 AST---------------IHLHRLIQQIKSAGMKAGVVLN-----PG---TPVEA----VEPVVEKGLVDMVLVMSVEPG  151 (229)
T ss_pred             ccc---------------hhHHHHHHHHHHCCCeEEEEEC-----CC---CCHHH----HHHHHhccCCCEEEEEEEecC
Confidence             11               2234667888888987653221     11   22322    33344553 887733    33


Q ss_pred             CcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894          270 TIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD  322 (398)
Q Consensus       270 T~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD  322 (398)
                      +.|...|....+.++.+++..+..+|.+    +=|.-..|.-..+++||+.|=
T Consensus       152 ~~~~~~~~~~~~~i~~~~~~~~~~~I~a----~GGI~~e~i~~l~~aGad~vv  200 (229)
T PLN02334        152 FGGQSFIPSMMDKVRALRKKYPELDIEV----DGGVGPSTIDKAAEAGANVIV  200 (229)
T ss_pred             CCccccCHHHHHHHHHHHHhCCCCcEEE----eCCCCHHHHHHHHHcCCCEEE
Confidence            4454455666777888887766555554    346667788899999999773

>PRK08883 ribulose-phosphate 3-epimerase; Provisional

Probab=95.88  E-value=0.5  Score=44.91  Aligned_cols=164  Identities=18%  Similarity=0.187  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHhcCCCEEEE----ecCCCCCcccCCCCHHHHHHHHHhc-cCCcEEE--EeCCHh-hHHHHHHcCCCEEEE
Q 015894          120 VKVELIKLLVSSGLAVVEA----TSFVSPKWVPQLADAKDVMAAIQNV-EGARFPV--LTPNLK-GFEAAVAAGAKEVAI  191 (398)
Q Consensus       120 ~k~~ia~~L~~aGv~~IEv----G~~~~~~~~p~~~D~~~v~~~i~~~-~~~~l~~--l~~n~~-~ie~a~~~Gv~~v~i  191 (398)
                      .-.+-++.|.++|++.+=+    |.|+     |.+.=-..+++.+++. ++..+-+  ++.+.. -++..+++|++.|.+
T Consensus        13 ~l~~~i~~l~~~g~~~lH~DvmDG~Fv-----pn~tfg~~~i~~i~~~~~~~~~dvHLMv~~p~~~i~~~~~~gad~i~~   87 (220)
T PRK08883         13 RLGEDVEKVLAAGADVVHFDVMDNHYV-----PNLTFGAPICKALRDYGITAPIDVHLMVKPVDRIIPDFAKAGASMITF   87 (220)
T ss_pred             HHHHHHHHHHHcCCCEEEEecccCccc-----CccccCHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEE
Confidence            3345677888999997666    5554     3333233567777765 4555544  445654 468889999998887


Q ss_pred             eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----
Q 015894          192 FASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL----  267 (398)
Q Consensus       192 ~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L----  267 (398)
                      ..-+                ...+.++++++|++|.++...+.     |.   ++.+.+.++++.     +|.|-+    
T Consensus        88 H~Ea----------------~~~~~~~l~~ik~~g~k~Glaln-----P~---Tp~~~i~~~l~~-----~D~vlvMtV~  138 (220)
T PRK08883         88 HVEA----------------SEHVDRTLQLIKEHGCQAGVVLN-----PA---TPLHHLEYIMDK-----VDLILLMSVN  138 (220)
T ss_pred             cccC----------------cccHHHHHHHHHHcCCcEEEEeC-----CC---CCHHHHHHHHHh-----CCeEEEEEec
Confidence            5432                23345678889999999875444     32   466777666542     233322    


Q ss_pred             ccCcCcCCHHHHHHHHHHHHhhCC----CCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894          268 GDTIGVGTPGTVIPMLEAVLDAVP----VDKLAVHFHDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       268 ~DT~G~~~P~~v~~lv~~l~~~~p----~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                      +.+.|.-.=....+.++.+++..+    +.+|.+    |-|.-..|+-..+++||+.+
T Consensus       139 PGfgGq~fi~~~lekI~~l~~~~~~~~~~~~I~v----dGGI~~eni~~l~~aGAd~v  192 (220)
T PRK08883        139 PGFGGQSFIPHTLDKLRAVRKMIDESGRDIRLEI----DGGVKVDNIREIAEAGADMF  192 (220)
T ss_pred             CCCCCceecHhHHHHHHHHHHHHHhcCCCeeEEE----ECCCCHHHHHHHHHcCCCEE
Confidence            233343232334445666666543    244555    88899999999999999977

>PLN02858 fructose-bisphosphate aldolase

Probab=95.85  E-value=0.93  Score=53.95  Aligned_cols=222  Identities=14%  Similarity=0.113  Sum_probs=146.2

Q ss_pred             ccCCCCC--CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh-cc--CCcEEEEe---CCHhhH
Q 015894          107 DGLQNEK--NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN-VE--GARFPVLT---PNLKGF  178 (398)
Q Consensus       107 DG~Q~~~--~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~-~~--~~~l~~l~---~n~~~i  178 (398)
                      ++.+..+  +.++.+....++++-.+.+.+.|=-.++..-++.+    .+ +...++. ..  .+.+....   .+.+.+
T Consensus      1111 ~~~yav~afn~~n~e~~~avi~aAe~~~sPvIl~~~~~~~~~~~----~~-~~~~~~~~a~~~~vpV~lHLDHg~~~~~i 1185 (1378)
T PLN02858       1111 KGGYAVGAFNVYNLEGIEAVVAAAEAEKSPAILQVHPGALKQGG----IP-LVSCCIAAAEQASVPITVHFDHGTSKHEL 1185 (1378)
T ss_pred             HCCcEEEEEEeCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcC----HH-HHHHHHHHHHHCCCCEEEECCCCCCHHHH
Confidence            3444444  35788888889999999999988776554333222    22 3333332 12  34444433   367889


Q ss_pred             HHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC--------CCCCHHHH
Q 015894          179 EAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE--------GMVPPSKV  250 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~--------~r~~~~~l  250 (398)
                      .+|+++|.+.|.+=.|          ..+.+|+++.-++++++|+..|+.|++.|-..-|.++.        ..++|+..
T Consensus      1186 ~~ai~~Gf~SVM~DgS----------~l~~eeNi~~t~~vv~~Ah~~gv~VEaElG~v~g~e~~~~~~~~~~~~T~p~~a 1255 (1378)
T PLN02858       1186 LEALELGFDSVMVDGS----------HLSFTENISYTKSISSLAHSKGLMVEAELGRLSGTEDGLTVEEYEAKLTDVDQA 1255 (1378)
T ss_pred             HHHHHhCCCEEEEeCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCccccccccCCCCHHHH
Confidence            9999999998887333          23578999999999999999999999888776555543        14677776


Q ss_pred             HHHHHHHHhCCCCEE--EEccCcCcC---CHHHHHHHHHHHHhhCC--CCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          251 AYVSKQLYDMGCSEI--SLGDTIGVG---TPGTVIPMLEAVLDAVP--VDKLAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       251 ~~~a~~l~~~Gad~I--~L~DT~G~~---~P~~v~~lv~~l~~~~p--~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      .++++   +-|+|.+  .+.-.=|.-   .|.==.++++.+++..+  ++||.+|+=.  |..-.....|++.|+.-|  
T Consensus      1256 ~~Fv~---~TgvD~LAvaiGt~HG~Y~~~~p~l~~~~l~~i~~~~~~~~vpLVlHGgS--G~~~~~~~~ai~~Gi~Ki-- 1328 (1378)
T PLN02858       1256 KEFID---ETGIDALAVCIGNVHGKYPASGPNLRLDLLKELRALSSKKGVLLVLHGAS--GLPESLIKECIENGVRKF-- 1328 (1378)
T ss_pred             HHHHH---hcCCcEEeeecccccccCCCCCCccCHHHHHHHHHHhcCCCCcEEEeCCC--CCCHHHHHHHHHcCCeEE--
Confidence            66654   5688864  444454543   24444567888888873  5788888754  555788999999999766  


Q ss_pred             ccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHH
Q 015894          324 SVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMI  366 (398)
Q Consensus       324 Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~  366 (398)
                                      |..||.-..+.+...-...+|..++..
T Consensus      1329 ----------------Ni~T~~~~a~~~~~~~~~~~~~~~~~~ 1355 (1378)
T PLN02858       1329 ----------------NVNTEVRTAYMEALSSPKKTDLIDVMS 1355 (1378)
T ss_pred             ----------------EeCHHHHHHHHHHHhCcccCCHHHHHH
Confidence                            555666666555432123466544443

>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional

Probab=95.83  E-value=1.7  Score=40.86  Aligned_cols=180  Identities=16%  Similarity=0.111  Sum_probs=106.1

Q ss_pred             CCCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEE-
Q 015894           93 RVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVL-  171 (398)
Q Consensus        93 ~~p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l-  171 (398)
                      ++|+.+.+...+. .|.-.    -+.++..++++...+.|...++++.            . +.++.+++..+..+..+ 
T Consensus         2 ~~~~~~~~~~~~~-~~~~~----~~~~~~~~~a~a~~~~G~~~~~~~~------------~-~~i~~i~~~~~~Pil~~~   63 (221)
T PRK01130          2 QLKGGLIVSCQAL-PGEPL----HSPEIMAAMALAAVQGGAVGIRANG------------V-EDIKAIRAVVDVPIIGII   63 (221)
T ss_pred             CcCCCEEEEecCC-CCCCC----CCHHHHHHHHHHHHHCCCeEEEcCC------------H-HHHHHHHHhCCCCEEEEE
Confidence            3566777776665 33222    3567779999999999999999742            1 33445554334433222 


Q ss_pred             ----------e-CCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHh-CCCcEEEEEeeeecC
Q 015894          172 ----------T-PNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARE-LSIPVRGYLSCVVGC  239 (398)
Q Consensus       172 ----------~-~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~-~G~~v~~~l~~~fg~  239 (398)
                                . ...+.++.+.++|+|.|-+-.+..+.         +.  -+.+.++++.+++ .|+.+.+.       
T Consensus        64 ~~d~~~~~~~~~~~~~~v~~a~~aGad~I~~d~~~~~~---------p~--~~~~~~~i~~~~~~~~i~vi~~-------  125 (221)
T PRK01130         64 KRDYPDSEVYITPTLKEVDALAAAGADIIALDATLRPR---------PD--GETLAELVKRIKEYPGQLLMAD-------  125 (221)
T ss_pred             ecCCCCCCceECCCHHHHHHHHHcCCCEEEEeCCCCCC---------CC--CCCHHHHHHHHHhCCCCeEEEe-------
Confidence                      1 23457899999999966654332100         00  0223466788888 67765421       


Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCEEEEc--cCcCc--CCHHHHHHHHHHHHhhCCCCeEEEEeCCccchH-HHHHHHHH
Q 015894          240 PVEGMVPPSKVAYVSKQLYDMGCSEISLG--DTIGV--GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQA-LSNILASL  314 (398)
Q Consensus       240 ~~~~r~~~~~l~~~a~~l~~~Gad~I~L~--DT~G~--~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA-~ANalaAl  314 (398)
                       .   .+++.    ++.+.+.|+|.|.+.  +..|.  .....-.++++.+++.+. +|+-.    ..|.. ..++..++
T Consensus       126 -v---~t~ee----~~~a~~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~~-iPvia----~GGI~t~~~~~~~l  192 (221)
T PRK01130        126 -C---STLEE----GLAAQKLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAVG-CPVIA----EGRINTPEQAKKAL  192 (221)
T ss_pred             -C---CCHHH----HHHHHHcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhCC-CCEEE----ECCCCCHHHHHHHH
Confidence             1   24444    356788999988652  21111  111122456777777653 34443    55774 57888888


Q ss_pred             HhCCCEE
Q 015894          315 QMGISTV  321 (398)
Q Consensus       315 ~aGa~~V  321 (398)
                      ++|++.|
T Consensus       193 ~~GadgV  199 (221)
T PRK01130        193 ELGAHAV  199 (221)
T ss_pred             HCCCCEE
Confidence            9998865

>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]

Probab=95.80  E-value=1.5  Score=41.86  Aligned_cols=180  Identities=18%  Similarity=0.173  Sum_probs=110.6

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe--C---C-----HhhHHHHH
Q 015894          113 KNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT--P---N-----LKGFEAAV  182 (398)
Q Consensus       113 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~---n-----~~~ie~a~  182 (398)
                      +...+.++..++++.-.+.|+..+-+    +|.|+|.      ....++.....+++..+  |   +     ....+.++
T Consensus        18 k~~~T~~~I~~l~~eA~~~~f~avCV----~P~~V~~------A~~~l~g~~~~~v~tVigFP~G~~~t~~K~~Ea~~ai   87 (228)
T COG0274          18 KPDATEEDIARLCAEAKEYGFAAVCV----NPSYVPL------AKEALKGSTVVRVCTVIGFPLGANTTAVKAAEAREAI   87 (228)
T ss_pred             CCCCCHHHHHHHHHHHHhhCceEEEE----CcchHHH------HHHHhccCCCeEEEEecCCCCCCChHHHHHHHHHHHH
Confidence            34567888888999999999887776    5666642      12233321223344433  3   1     13456889


Q ss_pred             HcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCC
Q 015894          183 AAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGC  262 (398)
Q Consensus       183 ~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Ga  262 (398)
                      +.|+++|.+.+.....     ...+++...+.++.+++.+..+ ..+-+-+.  .     ...+.+.....++...++|+
T Consensus        88 ~~GAdEiDmVinig~~-----k~g~~~~V~~eI~~v~~a~~~~-~~lKVIlE--t-----~~Lt~ee~~~A~~i~~~aGA  154 (228)
T COG0274          88 ENGADEIDMVINIGAL-----KSGNWEAVEREIRAVVEACADA-VVLKVILE--T-----GLLTDEEKRKACEIAIEAGA  154 (228)
T ss_pred             HcCCCeeeeeeeHHHH-----hcCCHHHHHHHHHHHHHHhCCC-ceEEEEEe--c-----cccCHHHHHHHHHHHHHhCC
Confidence            9999999998875332     2346777888888888887765 33333233  1     23456677888999999999


Q ss_pred             CEEEEc--cCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894          263 SEISLG--DTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       263 d~I~L~--DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                      |-|-=.  =+.|..+++++.-+.+.+...     +++-.---..- ..-+++-+++|+.+|
T Consensus       155 dFVKTSTGf~~~gAT~edv~lM~~~vg~~-----vgvKaSGGIrt-~eda~~~i~aga~Ri  209 (228)
T COG0274         155 DFVKTSTGFSAGGATVEDVKLMKETVGGR-----VGVKASGGIRT-AEDAKAMIEAGATRI  209 (228)
T ss_pred             CEEEcCCCCCCCCCCHHHHHHHHHHhccC-----ceeeccCCcCC-HHHHHHHHHHhHHHh
Confidence            976321  125777888887777776432     33332211111 245566677886654

>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated

Probab=95.79  E-value=0.62  Score=45.44  Aligned_cols=183  Identities=12%  Similarity=0.161  Sum_probs=102.2

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc---cCCcEEEEeCCHhhHHHHHHc--CCCEEE
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV---EGARFPVLTPNLKGFEAAVAA--GAKEVA  190 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~~n~~~ie~a~~~--Gv~~v~  190 (398)
                      -+.+..++.+..+.+.|.+.|++|..+.+.     .+.+.+...++.+   .++.++.=+.+.+-++.|++.  |.+.|.
T Consensus        22 ~d~~~i~~~A~~~~~~GAdiIDVg~~~~~~-----eE~~r~~~~v~~l~~~~~~plsIDT~~~~v~eaaL~~~~G~~iIN   96 (261)
T PRK07535         22 KDAAFIQKLALKQAEAGADYLDVNAGTAVE-----EEPETMEWLVETVQEVVDVPLCIDSPNPAAIEAGLKVAKGPPLIN   96 (261)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCCCch-----hHHHHHHHHHHHHHHhCCCCEEEeCCCHHHHHHHHHhCCCCCEEE
Confidence            355667788999999999999999764331     1133344444432   355555555677888899987  877654


Q ss_pred             EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCC--EEEEc
Q 015894          191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCS--EISLG  268 (398)
Q Consensus       191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad--~I~L~  268 (398)
                         ++|-.      +       ++..+++..++++|..+.+-.+..-|.|....-..+++.+.++.+.++|++  .|.+=
T Consensus        97 ---sIs~~------~-------~~~~~~~~l~~~~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~IilD  160 (261)
T PRK07535         97 ---SVSAE------G-------EKLEVVLPLVKKYNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPPEDIYID  160 (261)
T ss_pred             ---eCCCC------C-------ccCHHHHHHHHHhCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHhHEEEe
Confidence               22210      0       112345667788888775322211122211000125566677778889984  55543


Q ss_pred             cCcCc--CCH---HHHHHHHHHHHhhCCCCeEEEEeCC-ccchHH------HHHHHHHHhCCC
Q 015894          269 DTIGV--GTP---GTVIPMLEAVLDAVPVDKLAVHFHD-TYGQAL------SNILASLQMGIS  319 (398)
Q Consensus       269 DT~G~--~~P---~~v~~lv~~l~~~~p~~~l~~H~Hn-d~GlA~------ANalaAl~aGa~  319 (398)
                      =-+|.  -.+   .++-+.++.+++.+|+.|+.+=.+| .+|++-      +=...|+++|.+
T Consensus       161 Pgi~~~~~~~~~~~~~l~~i~~l~~~~pg~p~l~G~Sn~Sfglp~r~~in~~fl~~a~~~Gl~  223 (261)
T PRK07535        161 PLVLPLSAAQDAGPEVLETIRRIKELYPKVHTTCGLSNISFGLPNRKLINRAFLVMAMGAGMD  223 (261)
T ss_pred             CCCCcccCChHHHHHHHHHHHHHHHhCCCCCEEEEeCCCccCCcchHHHHHHHHHHHHHcCCC
Confidence            33341  123   3345566667777776666665554 356531      222344566654

>TIGR00284 dihydropteroate synthase-related protein

Probab=95.76  E-value=1.6  Score=46.45  Aligned_cols=174  Identities=15%  Similarity=0.040  Sum_probs=105.3

Q ss_pred             HHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc---cCCcEEEEeCCHhhHHHHHHcCCCEEEEeccC
Q 015894          119 VVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV---EGARFPVLTPNLKGFEAAVAAGAKEVAIFASA  195 (398)
Q Consensus       119 ~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~  195 (398)
                      +..++-+..+.+.|.+.|++|.....   |   +++.+...++.+   .+..++.=+.+.+-+++|+++|++.|.   ++
T Consensus       165 ~~i~~~A~~~~~~GADIIDIG~~st~---p---~~~~v~~~V~~l~~~~~~pISIDT~~~~v~eaAL~aGAdiIN---sV  235 (499)
T TIGR00284       165 DGIEGLAARMERDGADMVALGTGSFD---D---DPDVVKEKVKTALDALDSPVIADTPTLDELYEALKAGASGVI---MP  235 (499)
T ss_pred             HHHHHHHHHHHHCCCCEEEECCCcCC---C---cHHHHHHHHHHHHhhCCCcEEEeCCCHHHHHHHHHcCCCEEE---EC
Confidence            66788899999999999999975431   1   233455555533   244444445788889999999999766   33


Q ss_pred             chHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCC
Q 015894          196 SESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGT  275 (398)
Q Consensus       196 Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~  275 (398)
                      |.            .   ++.++...+++.|..+.  ++.     .......+++.+.++.+.++|.+.| +.|-.=...
T Consensus       236 s~------------~---~~d~~~~l~a~~g~~vV--lm~-----~~~~~~~~~l~~~ie~a~~~Gi~~I-IlDPglg~~  292 (499)
T TIGR00284       236 DV------------E---NAVELASEKKLPEDAFV--VVP-----GNQPTNYEELAKAVKKLRTSGYSKV-AADPSLSPP  292 (499)
T ss_pred             Cc------------c---chhHHHHHHHHcCCeEE--EEc-----CCCCchHHHHHHHHHHHHHCCCCcE-EEeCCCCcc
Confidence            32            1   12244566677777664  332     1111223788888999999999764 445322223


Q ss_pred             HHHHHHHHHHHH---hhCCCCeE--EE-Ee-----CCccchHHHHHHHHHHhCCCEEeecc
Q 015894          276 PGTVIPMLEAVL---DAVPVDKL--AV-HF-----HDTYGQALSNILASLQMGISTVDSSV  325 (398)
Q Consensus       276 P~~v~~lv~~l~---~~~p~~~l--~~-H~-----Hnd~GlA~ANalaAl~aGa~~VD~Sv  325 (398)
                      +..+.+-+..++   +.++ .|+  ++ ..     =+..|.-.+-+..|++.||++|=+.=
T Consensus       293 ~~~l~~sL~~l~~~r~~~~-~Pil~GvSNvtel~daDs~g~naal~~~a~e~Ga~ilrvhd  352 (499)
T TIGR00284       293 LLGLLESIIRFRRASRLLN-VPLVFGAANVTELVDADSHGVNALLAAIALEAGASILYVVE  352 (499)
T ss_pred             hHHHHHHHHHHHHHHHhcC-CcEEEeeccccCCCccchhHHHHHHHHHHHHcCCCEEEEcC
Confidence            344555555554   3554 233  32 00     13445556666778899999875554

This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.

>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial

Probab=95.73  E-value=1.3  Score=44.13  Aligned_cols=166  Identities=17%  Similarity=0.080  Sum_probs=101.0

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCC----HhhHHHHHHcCCCEEE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPN----LKGFEAAVAAGAKEVA  190 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n----~~~ie~a~~~Gv~~v~  190 (398)
                      .++.++..++++.+.+.|+..|-++.. .|- +  ..|..++++.+++.++.+-..++.|    .+.++...++|++.|.
T Consensus        42 ~ls~eei~~~i~~~~~~gv~~V~ltGG-EPl-l--~~~l~~li~~i~~~~gi~~v~itTNG~ll~~~~~~L~~~gl~~v~  117 (334)
T TIGR02666        42 LLTFEEIERLVRAFVGLGVRKVRLTGG-EPL-L--RKDLVELVARLAALPGIEDIALTTNGLLLARHAKDLKEAGLKRVN  117 (334)
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEECc-ccc-c--cCCHHHHHHHHHhcCCCCeEEEEeCchhHHHHHHHHHHcCCCeEE
Confidence            578999999999999999998888642 221 1  1255666666666566632333333    2346677889999999


Q ss_pred             EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCC--EEEE
Q 015894          191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIP-VRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCS--EISL  267 (398)
Q Consensus       191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~-v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad--~I~L  267 (398)
                      |.+...+......+.. ....++.+.+.++.+++.|+. +..+....   +   ..+.+++.++++.+.+.|++  -|.+
T Consensus       118 ISld~~~~~~~~~i~~-~~~~~~~vl~~i~~l~~~G~~~v~in~vv~---~---g~n~~ei~~l~~~~~~~gv~~~~ie~  190 (334)
T TIGR02666       118 VSLDSLDPERFAKITR-RGGRLEQVLAGIDAALAAGLEPVKLNTVVM---R---GVNDDEIVDLAEFAKERGVTLRFIEL  190 (334)
T ss_pred             EecccCCHHHhheeCC-CCCCHHHHHHHHHHHHHcCCCcEEEEEEEe---C---CCCHHHHHHHHHHHHhcCCeEEEEec
Confidence            8765432211112211 112455666777888999997 66443321   1   13567888999999999986  2345


Q ss_pred             ccCcCcCC-----HHHHHHHHHHHHhhCC
Q 015894          268 GDTIGVGT-----PGTVIPMLEAVLDAVP  291 (398)
Q Consensus       268 ~DT~G~~~-----P~~v~~lv~~l~~~~p  291 (398)
                      ....+...     .....++++.+++.++
T Consensus       191 mp~~~~~~~~~~~~~~~~ei~~~l~~~~~  219 (334)
T TIGR02666       191 MPLGEGNGWREKKFVSADEILERLEQAFG  219 (334)
T ss_pred             cCCCCCccchhhcccCHHHHHHHHHhhcc
Confidence            54433211     1235567777777664

The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.

>PRK08745 ribulose-phosphate 3-epimerase; Provisional

Probab=95.71  E-value=0.35  Score=46.15  Aligned_cols=168  Identities=17%  Similarity=0.135  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHhcCCCEEEE----ecCCCCCcccCCCCHHHHHHHHHhc-cCCcEEE--EeCCH-hhHHHHHHcCCCEEEE
Q 015894          120 VKVELIKLLVSSGLAVVEA----TSFVSPKWVPQLADAKDVMAAIQNV-EGARFPV--LTPNL-KGFEAAVAAGAKEVAI  191 (398)
Q Consensus       120 ~k~~ia~~L~~aGv~~IEv----G~~~~~~~~p~~~D~~~v~~~i~~~-~~~~l~~--l~~n~-~~ie~a~~~Gv~~v~i  191 (398)
                      .-.+-++.|.+.|++.+=+    |.|+     |++.=...+++.+++. ++..+-+  ++.+. .-++..+++|++.|.+
T Consensus        17 ~l~~~i~~l~~~g~d~lHiDimDG~FV-----PN~tfg~~~i~~lr~~~~~~~~dvHLMv~~P~~~i~~~~~~gad~I~~   91 (223)
T PRK08745         17 RLGEEVDNVLKAGADWVHFDVMDNHYV-----PNLTIGPMVCQALRKHGITAPIDVHLMVEPVDRIVPDFADAGATTISF   91 (223)
T ss_pred             HHHHHHHHHHHcCCCEEEEecccCccC-----CCcccCHHHHHHHHhhCCCCCEEEEeccCCHHHHHHHHHHhCCCEEEE
Confidence            3345678888999997666    5554     3333233567777765 5655544  44554 4578889999998887


Q ss_pred             eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----
Q 015894          192 FASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL----  267 (398)
Q Consensus       192 ~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L----  267 (398)
                      ..-.+                ....++++++|++|..+...+.     |.   ++.+.+.++...     +|.|-+    
T Consensus        92 H~Ea~----------------~~~~~~l~~Ir~~g~k~Glaln-----P~---T~~~~i~~~l~~-----vD~VlvMtV~  142 (223)
T PRK08745         92 HPEAS----------------RHVHRTIQLIKSHGCQAGLVLN-----PA---TPVDILDWVLPE-----LDLVLVMSVN  142 (223)
T ss_pred             cccCc----------------ccHHHHHHHHHHCCCceeEEeC-----CC---CCHHHHHHHHhh-----cCEEEEEEEC
Confidence            54322                2345677888999998875554     32   466777666542     233222    


Q ss_pred             ccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894          268 GDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       268 ~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                      +.-.|.-.=..+.+-++.+++..+...+.+..-=|=|....|+-...++||+.+
T Consensus       143 PGf~GQ~fi~~~l~KI~~l~~~~~~~~~~~~IeVDGGI~~eti~~l~~aGaDi~  196 (223)
T PRK08745        143 PGFGGQAFIPSALDKLRAIRKKIDALGKPIRLEIDGGVKADNIGAIAAAGADTF  196 (223)
T ss_pred             CCCCCccccHHHHHHHHHHHHHHHhcCCCeeEEEECCCCHHHHHHHHHcCCCEE
Confidence            334455554566666777776654322334455577888899999999999865

>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed

Probab=95.69  E-value=1.5  Score=44.88  Aligned_cols=177  Identities=17%  Similarity=0.175  Sum_probs=112.8

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEecCCC---CCcccCCCCHHHHHHHHH---hccCCcEEEEeCCHhhHHHHHHcCCCEEE
Q 015894          117 PAVVKVELIKLLVSSGLAVVEATSFVS---PKWVPQLADAKDVMAAIQ---NVEGARFPVLTPNLKGFEAAVAAGAKEVA  190 (398)
Q Consensus       117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~---~~~~p~~~D~~~v~~~i~---~~~~~~l~~l~~n~~~ie~a~~~Gv~~v~  190 (398)
                      +.++.+++|+.|.+.|+..+--|+|-.   |...-.+ . .+-+..++   +-.+..+..=+.+..+++.+.+. ++.+.
T Consensus       130 ~~~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~-~-~e~l~~L~~~~~~~Gl~~~t~v~d~~~~~~l~~~-vd~lk  206 (360)
T PRK12595        130 SYEQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGL-G-VEGLKILKQVADEYGLAVISEIVNPADVEVALDY-VDVIQ  206 (360)
T ss_pred             CHHHHHHHHHHHHHcCCcEEEccccCCCCCCccccCC-C-HHHHHHHHHHHHHcCCCEEEeeCCHHHHHHHHHh-CCeEE
Confidence            578889999999999999999887642   2111011 1 12223333   22344444434577889988888 99888


Q ss_pred             EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC-CCHHHHHHHHHHHHhCCCCEEEEcc
Q 015894          191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGM-VPPSKVAYVSKQLYDMGCSEISLGD  269 (398)
Q Consensus       191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r-~~~~~l~~~a~~l~~~Gad~I~L~D  269 (398)
                      |....  .        +      + .++++++.+.|.+|.  ++       .+. .+++++...++.+.+.|.+.|.|+.
T Consensus       207 I~s~~--~--------~------n-~~LL~~~a~~gkPVi--lk-------~G~~~t~~e~~~Ave~i~~~Gn~~i~L~e  260 (360)
T PRK12595        207 IGARN--M--------Q------N-FELLKAAGRVNKPVL--LK-------RGLSATIEEFIYAAEYIMSQGNGQIILCE  260 (360)
T ss_pred             ECccc--c--------c------C-HHHHHHHHccCCcEE--Ee-------CCCCCCHHHHHHHHHHHHHCCCCCEEEEC
Confidence            74331  1        1      1 145566667888875  33       233 5899999999999999998899997


Q ss_pred             -C-cCcCCH--H--HHHHHHHHHHhhCCCCeEEE-EeCCccc---hHHHHHHHHHHhCCC--EEeecc
Q 015894          270 -T-IGVGTP--G--TVIPMLEAVLDAVPVDKLAV-HFHDTYG---QALSNILASLQMGIS--TVDSSV  325 (398)
Q Consensus       270 -T-~G~~~P--~--~v~~lv~~l~~~~p~~~l~~-H~Hnd~G---lA~ANalaAl~aGa~--~VD~Sv  325 (398)
                       . ..+-+|  .  .+.. +..+++.+. .|+++ =.|- .|   +..+.+++|+.+||+  +|+.=.
T Consensus       261 rg~s~yp~~~~~~ldl~~-i~~lk~~~~-~PV~~d~~Hs-~G~r~~~~~~a~aAva~GAdg~~iE~H~  325 (360)
T PRK12595        261 RGIRTYEKATRNTLDISA-VPILKQETH-LPVMVDVTHS-TGRRDLLLPTAKAALAIGADGVMAEVHP  325 (360)
T ss_pred             CccCCCCCCCCCCcCHHH-HHHHHHHhC-CCEEEeCCCC-CcchhhHHHHHHHHHHcCCCeEEEEecC
Confidence             2 111112  1  2333 455666554 56888 3443 55   777899999999996  666544

>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=95.66  E-value=1.8  Score=40.02  Aligned_cols=155  Identities=18%  Similarity=0.238  Sum_probs=99.9

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-cCCcEEE-EeCCHhhHHHHHHcCCCEEEEecc
Q 015894          117 PAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-EGARFPV-LTPNLKGFEAAVAAGAKEVAIFAS  194 (398)
Q Consensus       117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~~~~l~~-l~~n~~~ie~a~~~Gv~~v~i~~~  194 (398)
                      +.++-.++++.+.+.|++.||+..-..        +..++++.+++. +.+...+ ..-+.++++.|++.|++.|+.-.-
T Consensus        22 ~~~~~~~~~~~~~~~Gv~~vqlr~k~~--------~~~e~~~~~~~~~~~~~~g~gtvl~~d~~~~A~~~gAdgv~~p~~   93 (187)
T PRK07455         22 DLELGLQMAEAVAAGGMRLIEITWNSD--------QPAELISQLREKLPECIIGTGTILTLEDLEEAIAAGAQFCFTPHV   93 (187)
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEeCCCC--------CHHHHHHHHHHhCCCcEEeEEEEEcHHHHHHHHHcCCCEEECCCC
Confidence            678889999999999999999986321        345666666643 4443332 223458899999999999976321


Q ss_pred             CchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcC
Q 015894          195 ASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVG  274 (398)
Q Consensus       195 ~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~  274 (398)
                      -                    .+.++.++.+++..-      .|     -.+++++.    ++.++|+|.|.+==|.-..
T Consensus        94 ~--------------------~~~~~~~~~~~~~~i------~G-----~~t~~e~~----~A~~~Gadyv~~Fpt~~~~  138 (187)
T PRK07455         94 D--------------------PELIEAAVAQDIPII------PG-----ALTPTEIV----TAWQAGASCVKVFPVQAVG  138 (187)
T ss_pred             C--------------------HHHHHHHHHcCCCEE------cC-----cCCHHHHH----HHHHCCCCEEEECcCCccc
Confidence            1                    133556677777532      23     24565543    3456999998873331111


Q ss_pred             CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894          275 TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD  322 (398)
Q Consensus       275 ~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD  322 (398)
                      .    .++++.++..+|.+|+-.=    =|.-..|+-.-+++|++.|=
T Consensus       139 G----~~~l~~~~~~~~~ipvvai----GGI~~~n~~~~l~aGa~~va  178 (187)
T PRK07455        139 G----ADYIKSLQGPLGHIPLIPT----GGVTLENAQAFIQAGAIAVG  178 (187)
T ss_pred             C----HHHHHHHHhhCCCCcEEEe----CCCCHHHHHHHHHCCCeEEE
Confidence            1    3557777776665554442    36667899999999998663

>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]

Probab=95.65  E-value=0.91  Score=43.24  Aligned_cols=173  Identities=18%  Similarity=0.185  Sum_probs=112.0

Q ss_pred             HHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEE--EeCCH-hhHHHHHHcCCCEEEEeccCch
Q 015894          121 KVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPV--LTPNL-KGFEAAVAAGAKEVAIFASASE  197 (398)
Q Consensus       121 k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~n~-~~ie~a~~~Gv~~v~i~~~~Sd  197 (398)
                      -.+-++.+.++|.+.|=+-... ..++|++.=-..+++.++...+..+-+  |+.+. +-++..+++|++.|.+..-.+ 
T Consensus        18 l~~el~~~~~agad~iH~DVMD-ghFVPNiTfGp~~v~~l~~~t~~p~DvHLMV~~p~~~i~~fa~agad~It~H~E~~-   95 (220)
T COG0036          18 LGEELKALEAAGADLIHIDVMD-GHFVPNITFGPPVVKALRKITDLPLDVHLMVENPDRYIEAFAKAGADIITFHAEAT-   95 (220)
T ss_pred             HHHHHHHHHHcCCCEEEEeccC-CCcCCCcccCHHHHHHHhhcCCCceEEEEecCCHHHHHHHHHHhCCCEEEEEeccC-
Confidence            3456788899999976663211 123344433345777777654444433  44454 457888999999988765422 


Q ss_pred             HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----ccCcCc
Q 015894          198 SFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL----GDTIGV  273 (398)
Q Consensus       198 ~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L----~DT~G~  273 (398)
                                     ..+.++++++|++|.+..+.++     |.   |+.+.+.++...     +|.|-+    +.-.|.
T Consensus        96 ---------------~~~~r~i~~Ik~~G~kaGv~ln-----P~---Tp~~~i~~~l~~-----vD~VllMsVnPGfgGQ  147 (220)
T COG0036          96 ---------------EHIHRTIQLIKELGVKAGLVLN-----PA---TPLEALEPVLDD-----VDLVLLMSVNPGFGGQ  147 (220)
T ss_pred             ---------------cCHHHHHHHHHHcCCeEEEEEC-----CC---CCHHHHHHHHhh-----CCEEEEEeECCCCccc
Confidence                           3345778899999999875554     32   456776666543     344333    445566


Q ss_pred             CCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE-eec
Q 015894          274 GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV-DSS  324 (398)
Q Consensus       274 ~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V-D~S  324 (398)
                      ..-.++.+-++.+|+..+... .+-.-=|-|.-..|+-.+.+|||+++ -+|
T Consensus       148 ~Fi~~~l~Ki~~lr~~~~~~~-~~~IeVDGGI~~~t~~~~~~AGad~~VaGS  198 (220)
T COG0036         148 KFIPEVLEKIRELRAMIDERL-DILIEVDGGINLETIKQLAAAGADVFVAGS  198 (220)
T ss_pred             ccCHHHHHHHHHHHHHhcccC-CeEEEEeCCcCHHHHHHHHHcCCCEEEEEE
Confidence            666778888888888776321 33344477999999999999999955 444

>PRK08091 ribulose-phosphate 3-epimerase; Validated

Probab=95.64  E-value=0.7  Score=44.32  Aligned_cols=171  Identities=15%  Similarity=0.031  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHHhcCCCEEEE----ecCCCCCcccCCCCHHHHHHHHHhccCCcE--EEEeCCH-hhHHHHHHcCCCEEE
Q 015894          118 AVVKVELIKLLVSSGLAVVEA----TSFVSPKWVPQLADAKDVMAAIQNVEGARF--PVLTPNL-KGFEAAVAAGAKEVA  190 (398)
Q Consensus       118 ~~~k~~ia~~L~~aGv~~IEv----G~~~~~~~~p~~~D~~~v~~~i~~~~~~~l--~~l~~n~-~~ie~a~~~Gv~~v~  190 (398)
                      ...-.+-++.|.++|++.+=+    |.|+     |++.=...+++.++.  +..+  -.++.|. +-++..+++|++.|.
T Consensus        24 ~~~l~~el~~l~~~g~d~lHiDVMDG~FV-----PNitfGp~~i~~i~~--~~~~DvHLMv~~P~~~i~~~~~aGad~It   96 (228)
T PRK08091         24 WLKFNETLTTLSENQLRLLHFDIADGQFS-----PFFTVGAIAIKQFPT--HCFKDVHLMVRDQFEVAKACVAAGADIVT   96 (228)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEeccCCCcC-----CccccCHHHHHHhCC--CCCEEEEeccCCHHHHHHHHHHhCCCEEE
Confidence            344556788899999997666    4554     333222344555553  3333  3445564 457888999999888


Q ss_pred             EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE---
Q 015894          191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL---  267 (398)
Q Consensus       191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L---  267 (398)
                      +.+-++                ....++++..|++|..+.+.+..   +|.   ++.+.+.+++..     +|.|-+   
T Consensus        97 ~H~Ea~----------------~~~~~~l~~Ik~~g~~~kaGlal---nP~---Tp~~~i~~~l~~-----vD~VLiMtV  149 (228)
T PRK08091         97 LQVEQT----------------HDLALTIEWLAKQKTTVLIGLCL---CPE---TPISLLEPYLDQ-----IDLIQILTL  149 (228)
T ss_pred             EcccCc----------------ccHHHHHHHHHHCCCCceEEEEE---CCC---CCHHHHHHHHhh-----cCEEEEEEE
Confidence            754321                23456778889999944433442   232   567777776653     343322   


Q ss_pred             -ccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894          268 -GDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD  322 (398)
Q Consensus       268 -~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD  322 (398)
                       +.-.|...-..+.+-|+.+++..+.-.+.+..-=|=|.-..|+-...++||+++=
T Consensus       150 ~PGfgGQ~f~~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGaD~~V  205 (228)
T PRK08091        150 DPRTGTKAPSDLILDRVIQVENRLGNRRVEKLISIDGSMTLELASYLKQHQIDWVV  205 (228)
T ss_pred             CCCCCCccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEE
Confidence             3344555445666777777765442122222334667778899999999999663

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=95.58  E-value=0.32  Score=47.73  Aligned_cols=101  Identities=22%  Similarity=0.242  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----------ccCcCcCCHHH
Q 015894          209 EDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL----------GDTIGVGTPGT  278 (398)
Q Consensus       209 ~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L----------~DT~G~~~P~~  278 (398)
                      ++.++.+++.   .++.+..+.+.|..         .+++.+.+.++.+.++|+|.|.|          .+..| ..|..
T Consensus        75 ~~~~~~~~~~---~~~~~~p~ivsi~g---------~~~~~~~~~a~~~~~~G~d~iElN~~cP~~~~~g~~~~-~~~~~  141 (296)
T cd04740          75 EAFLEELLPW---LREFGTPVIASIAG---------STVEEFVEVAEKLADAGADAIELNISCPNVKGGGMAFG-TDPEA  141 (296)
T ss_pred             HHHHHHHHHH---hhcCCCcEEEEEec---------CCHHHHHHHHHHHHHcCCCEEEEECCCCCCCCCccccc-CCHHH
Confidence            4445544332   22345566555541         35788999999999999998876          12222 57899


Q ss_pred             HHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          279 VIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       279 v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      +.++++++++.. +.||.+..--+..-...-+..+.++|++.|+.
T Consensus       142 ~~eiv~~vr~~~-~~Pv~vKl~~~~~~~~~~a~~~~~~G~d~i~~  185 (296)
T cd04740         142 VAEIVKAVKKAT-DVPVIVKLTPNVTDIVEIARAAEEAGADGLTL  185 (296)
T ss_pred             HHHHHHHHHhcc-CCCEEEEeCCCchhHHHHHHHHHHcCCCEEEE
Confidence            999999999876 45777776544443445556678899998755

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=95.58  E-value=0.32  Score=47.03  Aligned_cols=191  Identities=15%  Similarity=0.133  Sum_probs=112.8

Q ss_pred             cEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe----C
Q 015894           98 VKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT----P  173 (398)
Q Consensus        98 I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~----~  173 (398)
                      +.=+|-|+-.|     ...+.++..++++...+.|++.+-+...    +++...      ..  ...++.+.+-.    +
T Consensus        20 ~~aiDh~~l~g-----p~~~~~~~~~~~~~a~~~~~~~v~~~p~----~~~~~~------~~--~~~~~~~~~~~~~~~~   82 (258)
T TIGR01949        20 IVPMDHGVSNG-----PIKGLVDIRKTVNEVAEGGADAVLLHKG----IVRRGH------RG--YGKDVGLIIHLSASTS   82 (258)
T ss_pred             EEECCCccccC-----CCCCcCCHHHHHHHHHhcCCCEEEeCcc----hhhhcc------cc--cCCCCcEEEEEcCCCC
Confidence            33356655443     2346677788999999999999888532    221100      00  01123322211    1


Q ss_pred             ------C---HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC
Q 015894          174 ------N---LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGM  244 (398)
Q Consensus       174 ------n---~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r  244 (398)
                            .   ...++.+++.|++.|.+.....+        .+..+.++.+.++.+.+++.|..+-+.+ ...|-. .+.
T Consensus        83 ~g~~~~~~~~~~~v~~al~~Ga~~v~~~~~~g~--------~~~~~~~~~~~~i~~~~~~~g~~liv~~-~~~Gvh-~~~  152 (258)
T TIGR01949        83 LSPDPNDKRIVTTVEDAIRMGADAVSIHVNVGS--------DTEWEQIRDLGMIAEICDDWGVPLLAMM-YPRGPH-IDD  152 (258)
T ss_pred             CCCCCCcceeeeeHHHHHHCCCCEEEEEEecCC--------chHHHHHHHHHHHHHHHHHcCCCEEEEE-eccCcc-ccc
Confidence                  1   12478999999998887654221        1234567888889999999999876422 222211 122


Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEE-EeCC--ccchHHHHHHHHHHhCCCEE
Q 015894          245 VPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAV-HFHD--TYGQALSNILASLQMGISTV  321 (398)
Q Consensus       245 ~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~-H~Hn--d~GlA~ANalaAl~aGa~~V  321 (398)
                      .+++.+...++.+.+.|+|.|... .  ...+..++    .+.+..+ +|+-. =+-+  |+..++.|.-.++++||+.+
T Consensus       153 ~~~~~~~~~~~~a~~~GADyikt~-~--~~~~~~l~----~~~~~~~-iPVva~GGi~~~~~~~~~~~i~~~~~aGa~Gi  224 (258)
T TIGR01949       153 RDPELVAHAARLGAELGADIVKTP-Y--TGDIDSFR----DVVKGCP-APVVVAGGPKTNSDREFLQMIKDAMEAGAAGV  224 (258)
T ss_pred             ccHHHHHHHHHHHHHHCCCEEecc-C--CCCHHHHH----HHHHhCC-CcEEEecCCCCCCHHHHHHHHHHHHHcCCcEE
Confidence            455666666788889999999975 1  12333333    3433332 23322 2333  67888999999999999955


Q ss_pred             ee
Q 015894          322 DS  323 (398)
Q Consensus       322 D~  323 (398)
                      -.
T Consensus       225 a~  226 (258)
T TIGR01949       225 AV  226 (258)
T ss_pred             eh
Confidence            43

Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.

>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]

Probab=95.56  E-value=0.31  Score=46.05  Aligned_cols=152  Identities=28%  Similarity=0.397  Sum_probs=101.0

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEEEe-CCHhhHHHHHHcCCCEEEEec
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPVLT-PNLKGFEAAVAAGAKEVAIFA  193 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~  193 (398)
                      -+.++-+.++++|.+.|++.||+++-. |       ++.+.++.++ +.|++.+.+=+ -+.++++.++++|.+.+-   
T Consensus        22 ~~~e~a~~~a~Ali~gGi~~IEITl~s-p-------~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiV---   90 (211)
T COG0800          22 DDVEEALPLAKALIEGGIPAIEITLRT-P-------AALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIV---   90 (211)
T ss_pred             CCHHHHHHHHHHHHHcCCCeEEEecCC-C-------CHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEE---
Confidence            467888999999999999999999743 2       3456666665 56755444332 488999999999998653   


Q ss_pred             cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE--ccCc
Q 015894          194 SASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL--GDTI  271 (398)
Q Consensus       194 ~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L--~DT~  271 (398)
                        |+.     ++          .++++.|+++|+.+..           +-.+|.++.    .+.++|++.+-+  +.++
T Consensus        91 --sP~-----~~----------~ev~~~a~~~~ip~~P-----------G~~TptEi~----~Ale~G~~~lK~FPa~~~  138 (211)
T COG0800          91 --SPG-----LN----------PEVAKAANRYGIPYIP-----------GVATPTEIM----AALELGASALKFFPAEVV  138 (211)
T ss_pred             --CCC-----CC----------HHHHHHHHhCCCcccC-----------CCCCHHHHH----HHHHcChhheeecCcccc
Confidence              221     11          3678999999998642           234565533    456799987665  3333


Q ss_pred             CcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCE
Q 015894          272 GVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGIST  320 (398)
Q Consensus       272 G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~  320 (398)
                      |  -|    .+++.+.--+|++    -+=-+-|-...|.-.=+.+|+..
T Consensus       139 G--g~----~~~ka~~gP~~~v----~~~pTGGVs~~N~~~yla~gv~a  177 (211)
T COG0800         139 G--GP----AMLKALAGPFPQV----RFCPTGGVSLDNAADYLAAGVVA  177 (211)
T ss_pred             C--cH----HHHHHHcCCCCCC----eEeecCCCCHHHHHHHHhCCceE
Confidence            2  22    3455554434543    34456777788998888888543

>TIGR03586 PseI pseudaminic acid synthase

Probab=95.56  E-value=1.4  Score=44.40  Aligned_cols=176  Identities=11%  Similarity=0.137  Sum_probs=108.6

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEecCCC-----CCccc-------CCC--CHHHHH----------HHHH---hccCCcEE
Q 015894          117 PAVVKVELIKLLVSSGLAVVEATSFVS-----PKWVP-------QLA--DAKDVM----------AAIQ---NVEGARFP  169 (398)
Q Consensus       117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~-----~~~~p-------~~~--D~~~v~----------~~i~---~~~~~~l~  169 (398)
                      +.+.-.++++...++|.+.|=...+..     +..-+       ...  ...+.+          ..+.   +-.++.+.
T Consensus        15 ~~~~A~~lI~~A~~aGAdavKFQ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~e~~~~L~~~~~~~Gi~~~   94 (327)
T TIGR03586        15 SLERALAMIEAAKAAGADAIKLQTYTPDTITLDSDRPEFIIKGGLWDGRTLYDLYQEAHTPWEWHKELFERAKELGLTIF   94 (327)
T ss_pred             hHHHHHHHHHHHHHhCCCEEEeeeccHHHhhccccccccccccCCcCCccHHHHHHHhhCCHHHHHHHHHHHHHhCCcEE
Confidence            677778899999999999877754321     10000       000  001111          1111   11233333


Q ss_pred             EEeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHH
Q 015894          170 VLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSK  249 (398)
Q Consensus       170 ~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~  249 (398)
                      .=......++...+.|++.+-|.-.  +.              .+ ..+++++.+.|.+|-  ++       .+..+.++
T Consensus        95 stpfd~~svd~l~~~~v~~~KI~S~--~~--------------~n-~~LL~~va~~gkPvi--ls-------tG~~t~~E  148 (327)
T TIGR03586        95 SSPFDETAVDFLESLDVPAYKIASF--EI--------------TD-LPLIRYVAKTGKPII--MS-------TGIATLEE  148 (327)
T ss_pred             EccCCHHHHHHHHHcCCCEEEECCc--cc--------------cC-HHHHHHHHhcCCcEE--EE-------CCCCCHHH
Confidence            3334667788888888888777422  11              11 134455556788875  43       23458999


Q ss_pred             HHHHHHHHHhCCCCEEEE--ccCcCcCCHHHHHH--HHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          250 VAYVSKQLYDMGCSEISL--GDTIGVGTPGTVIP--MLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       250 l~~~a~~l~~~Gad~I~L--~DT~G~~~P~~v~~--lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      +...++.+.+.|.+.|.|  | +.++-+|....+  .|..+++.++ .+|++=-|- .|  ...+++|+.+||++|+.
T Consensus       149 i~~Av~~i~~~g~~~i~LlhC-~s~YP~~~~~~nL~~i~~lk~~f~-~pVG~SDHt-~G--~~~~~aAva~GA~iIEk  221 (327)
T TIGR03586       149 IQEAVEACREAGCKDLVLLKC-TSSYPAPLEDANLRTIPDLAERFN-VPVGLSDHT-LG--ILAPVAAVALGACVIEK  221 (327)
T ss_pred             HHHHHHHHHHCCCCcEEEEec-CCCCCCCcccCCHHHHHHHHHHhC-CCEEeeCCC-Cc--hHHHHHHHHcCCCEEEe
Confidence            999999999999976666  7 666666655433  4677777774 689885453 44  67889999999998864

>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed

Probab=95.53  E-value=1.3  Score=44.15  Aligned_cols=137  Identities=23%  Similarity=0.205  Sum_probs=86.7

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCC-CCHHHHHHHHHhccCCcEEEEeCC---H-hhHHHHHHcCCCEE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQL-ADAKDVMAAIQNVEGARFPVLTPN---L-KGFEAAVAAGAKEV  189 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~-~D~~~v~~~i~~~~~~~l~~l~~n---~-~~ie~a~~~Gv~~v  189 (398)
                      .++.++..++++.+.+.|+..|.++. ..|    -+ .|..++++.+++.++..-..++.|   . +.++...++|++.|
T Consensus        48 ~ls~eei~~~i~~~~~~gi~~I~~tG-GEP----ll~~~l~~li~~i~~~~~~~~i~itTNG~ll~~~~~~L~~agl~~i  122 (331)
T PRK00164         48 LLSLEEIERLVRAFVALGVRKVRLTG-GEP----LLRKDLEDIIAALAALPGIRDLALTTNGYLLARRAAALKDAGLDRV  122 (331)
T ss_pred             cCCHHHHHHHHHHHHHCCCCEEEEEC-CCC----cCccCHHHHHHHHHhcCCCceEEEEcCchhHHHHHHHHHHcCCCEE
Confidence            58899999999999999999988864 222    22 355566666665433222333433   2 34566778999999


Q ss_pred             EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE
Q 015894          190 AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSI-PVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE  264 (398)
Q Consensus       190 ~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~-~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~  264 (398)
                      .|.+..-+.-....+  +....++.+.+.++.+++.|+ .+..+..  . .+   ..+.+++.++++.+.+.|++.
T Consensus       123 ~ISlds~~~e~~~~i--~~~~~~~~vl~~i~~~~~~g~~~v~i~~v--v-~~---g~n~~ei~~l~~~~~~~gv~v  190 (331)
T PRK00164        123 NVSLDSLDPERFKAI--TGRDRLDQVLAGIDAALAAGLTPVKVNAV--L-MK---GVNDDEIPDLLEWAKDRGIQL  190 (331)
T ss_pred             EEEeccCCHHHhccC--CCCCCHHHHHHHHHHHHHCCCCcEEEEEE--E-EC---CCCHHHHHHHHHHHHhCCCeE
Confidence            887644222111122  222456777788899999998 6654332  2 11   134578888888888999863

>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional

Probab=95.44  E-value=2  Score=43.79  Aligned_cols=221  Identities=14%  Similarity=0.124  Sum_probs=130.4

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCC---CCCcccCCCCHHHHHHHHHh---ccCCcEEEEeCCHhhHHHHHHcCCCEE
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFV---SPKWVPQLADAKDVMAAIQN---VEGARFPVLTPNLKGFEAAVAAGAKEV  189 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~---~~~~~p~~~D~~~v~~~i~~---~~~~~l~~l~~n~~~ie~a~~~Gv~~v  189 (398)
                      =+.++.+++|+.+.+.|+..+--|+|-   +|...-.+.  ++-+..+++   -.+..+..=+.+..+++.+.+. +|.+
T Consensus       112 Es~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g--~~gl~~L~~~~~e~Gl~~~tev~d~~~v~~~~~~-~d~l  188 (352)
T PRK13396        112 ENEEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHG--ESALELLAAAREATGLGIITEVMDAADLEKIAEV-ADVI  188 (352)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCch--HHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHhh-CCeE
Confidence            367888999999999999999988764   222111121  333444443   2344444434577888888887 7888


Q ss_pred             EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC-CCHHHHHHHHHHHHhCCCCEEEEc
Q 015894          190 AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGM-VPPSKVAYVSKQLYDMGCSEISLG  268 (398)
Q Consensus       190 ~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r-~~~~~l~~~a~~l~~~Gad~I~L~  268 (398)
                      .|-...          +.      + .++++++-+.|..|-  +.       .+. .+++++...++.+.+.|-+.|.|+
T Consensus       189 qIga~~----------~~------n-~~LL~~va~t~kPVl--lk-------~G~~~t~ee~~~A~e~i~~~Gn~~viL~  242 (352)
T PRK13396        189 QVGARN----------MQ------N-FSLLKKVGAQDKPVL--LK-------RGMAATIDEWLMAAEYILAAGNPNVILC  242 (352)
T ss_pred             EECccc----------cc------C-HHHHHHHHccCCeEE--Ee-------CCCCCCHHHHHHHHHHHHHcCCCeEEEE
Confidence            885331          11      1 134566666788875  33       122 389999999999999999988888


Q ss_pred             cC-----c-CcC-CHHHHHHHHHHHHhhCCCCeEEE---EeCCccchHHHHHHHHHHhCCC--EEeeccccCCCCCCCCC
Q 015894          269 DT-----I-GVG-TPGTVIPMLEAVLDAVPVDKLAV---HFHDTYGQALSNILASLQMGIS--TVDSSVSGLGGCPYAKG  336 (398)
Q Consensus       269 DT-----~-G~~-~P~~v~~lv~~l~~~~p~~~l~~---H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGecp~a~g  336 (398)
                      ..     . ++- .-.++. .+..+++.+ ..|+-+   |.=-...+..+.+++|+.+||+  +|+.=..        |-
T Consensus       243 erG~rtf~s~y~~~~~dl~-ai~~lk~~~-~lPVi~DpsH~~G~sd~~~~~a~AAva~GAdGliIE~H~~--------pd  312 (352)
T PRK13396        243 ERGIRTFDRQYTRNTLDLS-VIPVLRSLT-HLPIMIDPSHGTGKSEYVPSMAMAAIAAGTDSLMIEVHPN--------PA  312 (352)
T ss_pred             ecCCccCcCCCCCCCcCHH-HHHHHHHhh-CCCEEECCcccCCcHHHHHHHHHHHHhhCCCeEEEEecCC--------cc
Confidence            75     2 221 112222 244555554 345633   3223344456899999999999  7775433        11


Q ss_pred             CCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCCCCCCCccc
Q 015894          337 ASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAI  385 (398)
Q Consensus       337 raGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pi  385 (398)
                      ++  .+  +=   -  .-+ +.-++.+|.+-.+.+.+.+|....+..++
T Consensus       313 ~A--ls--D~---~--qsl-~p~~~~~l~~~i~~i~~~~g~~~~~~~~~  351 (352)
T PRK13396        313 KA--LS--DG---P--QSL-TPDRFDRLMQELAVIGKTVGRWPQPAAAL  351 (352)
T ss_pred             cC--CC--hh---h--hcC-CHHHHHHHHHHHHHHHHHhCCCCCccccc
Confidence            22  11  11   0  011 12334555666666677777766665544

>COG0191 Fba Fructose/tagatose bisphosphate aldolase [Carbohydrate transport and metabolism]

Probab=95.43  E-value=0.15  Score=50.18  Aligned_cols=118  Identities=16%  Similarity=0.213  Sum_probs=88.4

Q ss_pred             HHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEccC-cCcCC-HHHHHHHHHHHHhhCCC
Q 015894          216 RDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGDT-IGVGT-PGTVIPMLEAVLDAVPV  292 (398)
Q Consensus       216 ~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~DT-~G~~~-P~~v~~lv~~l~~~~p~  292 (398)
                      +++.+.||+.|+-|- .+.+         .+.+.+..+.+.+.+.+... |.+... .-++. -..+..++..+.+.+| 
T Consensus         7 ~~ll~~Ake~~yAvp-AfN~---------~nlE~~~AileaA~e~~sPvIiq~S~g~~~y~gg~~~~~~~v~~~a~~~~-   75 (286)
T COG0191           7 KELLDKAKENGYAVP-AFNI---------NNLETLQAILEAAEEEKSPVIIQFSEGAAKYAGGADSLAHMVKALAEKYG-   75 (286)
T ss_pred             HHHHHHHHHcCCcee-eeee---------cCHHHHHHHHHHHHHhCCCEEEEecccHHHHhchHHHHHHHHHHHHHHCC-
Confidence            677889999999774 2321         35788999999999998874 444332 22333 3678888888888888 


Q ss_pred             CeEEEEeCCccchHHHHHHHHHHhCCC--EEeeccccCCCCCCCCCCCCCc-cHHHHHHHHHhCCC
Q 015894          293 DKLAVHFHDTYGQALSNILASLQMGIS--TVDSSVSGLGGCPYAKGASGNV-ATEDVVYMLNGLGV  355 (398)
Q Consensus       293 ~~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGecp~a~graGNa-~lE~vv~~L~~~Gi  355 (398)
                      +|+.+|  -|.|....-...|+++|.+  ++|+|...+=|         |. -+.+++...+.+|+
T Consensus        76 vPV~lH--lDHg~~~~~~~~ai~~GFsSvMiDgS~~~~eE---------Ni~~tkevv~~ah~~gv  130 (286)
T COG0191          76 VPVALH--LDHGASFEDCKQAIRAGFSSVMIDGSHLPFEE---------NIAITKEVVEFAHAYGV  130 (286)
T ss_pred             CCEEEE--CCCCCCHHHHHHHHhcCCceEEecCCcCCHHH---------HHHHHHHHHHHHHHcCC
Confidence            577665  5888899999999999997  77999999888         76 56778887774443

>cd00946 FBP_aldolase_IIA Class II Type A, Fructose-1,6-bisphosphate (FBP) aldolases

Probab=95.40  E-value=3.6  Score=41.84  Aligned_cols=198  Identities=11%  Similarity=0.045  Sum_probs=120.2

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCC--CC---------HHHHHHHHHhc---cCCcEEEEe---CC---
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQL--AD---------AKDVMAAIQNV---EGARFPVLT---PN---  174 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~--~D---------~~~v~~~i~~~---~~~~l~~l~---~n---  174 (398)
                      .+..+....++++-.+++-+.|=-.+...-++.+..  .+         ...+...++..   -++.+....   .+   
T Consensus        23 ~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~A~~~~VPValHLDHg~~~~~  102 (345)
T cd00946          23 CTSSSTINAVLEAARDAKSPIIIQFSNGGAAFYAGKGLKNEKQKASIAGAIAAAHHVRSMAEHYGVPVVLHTDHCAKKLL  102 (345)
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEECCccHHhhcCCccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCCCCccc
Confidence            567888888999999999997765544321111100  00         00122222211   133333332   24   


Q ss_pred             ----------HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC--
Q 015894          175 ----------LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE--  242 (398)
Q Consensus       175 ----------~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~--  242 (398)
                                .+.+.++++.|...|.+=.|          ..+.+|.++.-++++++|+..|+.|++.|-.+-|.++.  
T Consensus       103 ~~~~~~~~a~~~~~~~a~~~GftSVMiDgS----------~lp~eENI~~TkevVe~Ah~~gvsVEaElG~igg~ed~~~  172 (345)
T cd00946         103 PWFDGLLEADEEYFKQHGEPLFSSHMLDLS----------EEPLEENIEICKKYLERMAKINMWLEMEIGITGGEEDGVD  172 (345)
T ss_pred             hhhHHHHHHHHHHHHHhccCCCceEEeeCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCcccCcc
Confidence                      22234455778888855222          23678999999999999999999999888776444332  


Q ss_pred             --------CCCCHHHHHHHHHHHHh-CCCCE--EEEccCcCcC---CHHHHHHHHHHH----HhhCC-----CCeEEEEe
Q 015894          243 --------GMVPPSKVAYVSKQLYD-MGCSE--ISLGDTIGVG---TPGTVIPMLEAV----LDAVP-----VDKLAVHF  299 (398)
Q Consensus       243 --------~r~~~~~l~~~a~~l~~-~Gad~--I~L~DT~G~~---~P~~v~~lv~~l----~~~~p-----~~~l~~H~  299 (398)
                              .-++|+...+++++.-. .|+|.  +.+.-.=|.-   .|.==.++++.+    ++.++     ++||.+|+
T Consensus       173 ~~~~~~~~~yTdPeeA~~Fv~~t~~~tgvD~LAvaiGt~HG~Y~~~~p~L~~~~L~~I~~~i~~~~~~~~~~~ipLVLHG  252 (345)
T cd00946         173 NSGVDNAELYTQPEDVWYVYEALSKISPNFSIAAAFGNVHGVYKPGNVKLQPEILGEHQDYVREKLGLADDKPLYFVFHG  252 (345)
T ss_pred             cccccccccCCCHHHHHHHHHHhccCCCceeeeeeccccccCCCCCCCccCHHHHHHHHHHHHHhhccccCCCCCEEEeC
Confidence                    13788888888876533 47775  3444444443   232233344444    65553     35777776


Q ss_pred             CCccchHHHHHHHHHHhCCCEEeec
Q 015894          300 HDTYGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       300 Hnd~GlA~ANalaAl~aGa~~VD~S  324 (398)
                      =  -|..-.....|++.|+.-|+..
T Consensus       253 g--SG~~~e~i~kai~~GI~KiNi~  275 (345)
T cd00946         253 G--SGSTKEEIREAISYGVVKMNID  275 (345)
T ss_pred             C--CCCCHHHHHHHHHcCCeeEEeC
Confidence            4  5888888999999999866543

The enzyme catalyses the zinc-dependent, reversible aldol condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to form fructose-1,6-bisphosphate. FBP aldolase is homodimeric and used in gluconeogenesis and glycolysis. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.

>PRK05283 deoxyribose-phosphate aldolase; Provisional

Probab=95.33  E-value=0.92  Score=44.27  Aligned_cols=201  Identities=16%  Similarity=0.168  Sum_probs=123.3

Q ss_pred             cEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHh--cCCCEEEEecCCCCCcccCCCCHHHHHHHHHh--ccCCcEEEEe-
Q 015894           98 VKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVS--SGLAVVEATSFVSPKWVPQLADAKDVMAAIQN--VEGARFPVLT-  172 (398)
Q Consensus        98 I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~--aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~--~~~~~l~~l~-  172 (398)
                      +.++|-|+      .....+.++..++++.-.+  .|+..+-+    +|.|+|      ...+.++.  .+++++.+.+ 
T Consensus        11 ~~~ID~Tl------L~p~~T~~~I~~lc~eA~~~~~~faaVcV----~P~~v~------~a~~~L~~~~~~~vkv~tVig   74 (257)
T PRK05283         11 LSLMDLTT------LNDDDTDEKVIALCHQAKTPVGNTAAICI----YPRFIP------IARKTLREQGTPEIRIATVTN   74 (257)
T ss_pred             HHHhcccC------CCCCCCHHHHHHHHHHHHhcCCCeeEEEE----CHHHHH------HHHHHhcccCCCCCeEEEEec
Confidence            44667666      3346788888888888887  57776665    444432      22333332  1146766554 


Q ss_pred             -CC--------HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCC
Q 015894          173 -PN--------LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEG  243 (398)
Q Consensus       173 -~n--------~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~  243 (398)
                       |.        ....+.|++.|+++|.+.+..+...     .-..+...+.+..+++.+.. |..+-+-|..       +
T Consensus        75 FP~G~~~t~~K~~Ea~~Ai~~GAdEiD~Vinig~lk-----~g~~~~v~~ei~~v~~~~~~-~~~lKVIlEt-------~  141 (257)
T PRK05283         75 FPHGNDDIDIALAETRAAIAYGADEVDVVFPYRALM-----AGNEQVGFELVKACKEACAA-NVLLKVIIET-------G  141 (257)
T ss_pred             CCCCCCcHHHHHHHHHHHHHcCCCEEeeeccHHHHh-----CCcHHHHHHHHHHHHHHhCC-CceEEEEEec-------c
Confidence             31        2356788999999999998876542     22466677777777777642 4545443431       2


Q ss_pred             CCCHH-HHHHHHHHHHhCCCCEEEEccCcC----cCCHHHHHHHHHHHHhh-CCCCeEEEEe---CCccchHHHHHHHHH
Q 015894          244 MVPPS-KVAYVSKQLYDMGCSEISLGDTIG----VGTPGTVIPMLEAVLDA-VPVDKLAVHF---HDTYGQALSNILASL  314 (398)
Q Consensus       244 r~~~~-~l~~~a~~l~~~Gad~I~L~DT~G----~~~P~~v~~lv~~l~~~-~p~~~l~~H~---Hnd~GlA~ANalaAl  314 (398)
                      ..+.+ .....++.+.++|+|-|  +=+.|    ..+|++++-+.+.+++. .+. .+++..   =.|+..|.+-..++-
T Consensus       142 ~L~~ee~i~~a~~~a~~aGADFV--KTSTGf~~~gAt~edv~lm~~~i~~~~~~~-~vgIKAsGGIrt~~~A~~~i~ag~  218 (257)
T PRK05283        142 ELKDEALIRKASEIAIKAGADFI--KTSTGKVPVNATLEAARIMLEVIRDMGVAK-TVGFKPAGGVRTAEDAAQYLALAD  218 (257)
T ss_pred             ccCCHHHHHHHHHHHHHhCCCEE--EcCCCCCCCCCCHHHHHHHHHHHHhcccCC-CeeEEccCCCCCHHHHHHHHHHHH
Confidence            34445 58889999999999955  34444    46788888877777542 121 244433   244545544443332


Q ss_pred             -HhCCCEEeeccccCCC
Q 015894          315 -QMGISTVDSSVSGLGG  330 (398)
Q Consensus       315 -~aGa~~VD~Sv~GlGe  330 (398)
                       ..|.++++.-..=+|.
T Consensus       219 ~~lg~~~~~~~~fR~G~  235 (257)
T PRK05283        219 EILGADWADARHFRFGA  235 (257)
T ss_pred             HHhChhhcCcccEeeeh
Confidence             3677888877776665

>cd00453 FTBP_aldolase_II Fructose/tagarose-bisphosphate aldolase class II

Probab=95.31  E-value=2.2  Score=43.22  Aligned_cols=193  Identities=16%  Similarity=0.124  Sum_probs=119.6

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCC-CCCcc--------cCCCC----HHHHHHHHHhc-c--CCcEEEEe---C--
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFV-SPKWV--------PQLAD----AKDVMAAIQNV-E--GARFPVLT---P--  173 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~-~~~~~--------p~~~D----~~~v~~~i~~~-~--~~~l~~l~---~--  173 (398)
                      .+..+....++++-.+.+.+.|=-.+.. ..++.        ||- |    .+.+...++.. +  ++.+....   .  
T Consensus        20 ~~n~e~~~Avi~aAee~~sPvIlq~s~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~A~~~~VPV~lHLDH~~~~   98 (340)
T cd00453          20 CVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQG-AAILGAISGAHHVHQMAEHYGVPVILHTDHCAKK   98 (340)
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEEcCcchHHHhCCCcccccccch-hhhhhHHHHHHHHHHHHHHCCCCEEEEcCCCCCC
Confidence            4678888889999999999988776541 11111        110 1    23333333321 2  34444432   4  


Q ss_pred             CHhhHHHHHHcC-----------CCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC
Q 015894          174 NLKGFEAAVAAG-----------AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE  242 (398)
Q Consensus       174 n~~~ie~a~~~G-----------v~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~  242 (398)
                      +.+.++.++++|           ...|.+=.|          ..+.++.++..++++++|+..|+.|++.|-..-|.++.
T Consensus        99 ~~e~i~~ai~~G~~~~~~~~~~~FsSVMiDgS----------~l~~eeNi~~T~~vve~Ah~~gi~VEaElG~igG~ed~  168 (340)
T cd00453          99 LLPWIDGLLDAGEKHFAATGKPLFSSHMIDLS----------EESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDG  168 (340)
T ss_pred             CHHHHHHHHHcCCccccccCCCCceeEEecCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEEEEecCCccCC
Confidence            557789999999           666665222          23577899999999999999999999888876554433


Q ss_pred             ----------CCCCHHHHHHHHHHHHhCC----CCE--EEEccCcCcC---CHHHHHHHHHHHHhhC--------CCCeE
Q 015894          243 ----------GMVPPSKVAYVSKQLYDMG----CSE--ISLGDTIGVG---TPGTVIPMLEAVLDAV--------PVDKL  295 (398)
Q Consensus       243 ----------~r~~~~~l~~~a~~l~~~G----ad~--I~L~DT~G~~---~P~~v~~lv~~l~~~~--------p~~~l  295 (398)
                                .-++|+...++++   +.|    +|.  +.+.-.=|.-   .|.==.++++.+++.+        |++||
T Consensus       169 ~~~~~~~~~~~yT~Peea~~Fv~---~Tg~i~pvD~LAvsiGt~HG~Yk~g~p~L~~~~L~~i~~~~~~~~gl~~~~~pL  245 (340)
T cd00453         169 VDNSHMDASALYTQPEDVDYAYT---ELSKISPRFTIAASFGNVHGVYKKGNVVLTPTILRDSQEYVSKKHNLPHNSLNF  245 (340)
T ss_pred             cccccccccccCCCHHHHHHHHH---HhCCCCcceEEeeecCccccCCCCCCCccCHHHHHHHHHHHHhhcccCCCCCce
Confidence                      0356887777765   445    554  3333333332   2322233444444444        25678


Q ss_pred             EEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          296 AVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       296 ~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      .+|+=  -|..--....|+..|+.-|+.
T Consensus       246 VlHGg--SG~~~e~~~~ai~~Gi~KiNi  271 (340)
T cd00453         246 VFHGG--SGSTAQEIKDSVSYGVVKMNI  271 (340)
T ss_pred             EEeCC--CCCCHHHHHHHHHcCCeEEEc
Confidence            87764  566667788889999876654

This family includes fructose-1,6-bisphosphate (FBP) and tagarose 1,6-bisphosphate (TBP) aldolases. FBP-aldolase is homodimeric and used in gluconeogenesis and glycolysis; the enzyme controls the condensation of dihydroxyacetone phosphate with glyceraldehyde-3-phosphate to yield fructose-1,6-bisphosphate. TBP-aldolase is tetrameric and produces tagarose-1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. Although structurally similar, the class I aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]

Probab=95.28  E-value=0.79  Score=45.27  Aligned_cols=210  Identities=15%  Similarity=0.156  Sum_probs=130.3

Q ss_pred             HHHHHHHhcCCCEEEEecCC--CCCccc--CCCCHHHHHHHHHhccC-CcEEEEeC---------C-HhhHHHHHHcCCC
Q 015894          123 ELIKLLVSSGLAVVEATSFV--SPKWVP--QLADAKDVMAAIQNVEG-ARFPVLTP---------N-LKGFEAAVAAGAK  187 (398)
Q Consensus       123 ~ia~~L~~aGv~~IEvG~~~--~~~~~p--~~~D~~~v~~~i~~~~~-~~l~~l~~---------n-~~~ie~a~~~Gv~  187 (398)
                      --+..+.++|++.+=+++..  ..-..|  .....++++..++++.+ +.+.+++-         | .+-++.+.++|+-
T Consensus        29 ~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a~~lPv~vD~dtGfG~~~nvartV~~~~~aG~a  108 (289)
T COG2513          29 GSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDAVDLPVLVDIDTGFGEALNVARTVRELEQAGAA  108 (289)
T ss_pred             HHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhhcCCceEEeccCCCCcHHHHHHHHHHHHHcCcc
Confidence            34677899999999987531  122223  12346788888886543 45555552         1 2346778889999


Q ss_pred             EEEEeccCchH---HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE
Q 015894          188 EVAIFASASES---FSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE  264 (398)
Q Consensus       188 ~v~i~~~~Sd~---~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~  264 (398)
                      .|+|-+.+-+-   |+..+-=.+.+++.++++.+++.+++..+.+.. =..+++.   +  -.+...+=++...++|+|.
T Consensus       109 gi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~A-RTda~~~---~--~ld~AI~Ra~AY~eAGAD~  182 (289)
T COG2513         109 GIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIA-RTDALLV---E--GLDDAIERAQAYVEAGADA  182 (289)
T ss_pred             eeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEe-ehHHHHh---c--cHHHHHHHHHHHHHcCCcE
Confidence            99998876552   211222236788888887777766653333221 1111110   1  1355555566777899999


Q ss_pred             EEEccCcCcCCHHHHHHHHHHHHhhCCC-CeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccH
Q 015894          265 ISLGDTIGVGTPGTVIPMLEAVLDAVPV-DKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVAT  343 (398)
Q Consensus       265 I~L~DT~G~~~P~~v~~lv~~l~~~~p~-~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~l  343 (398)
                      |+..   |.-.+++++.+.++++  .|. ..+.-+++.  .+-..--|+  ++|+++|-..+..+        |+.+..+
T Consensus       183 if~~---al~~~e~i~~f~~av~--~pl~~N~t~~g~t--p~~~~~~L~--~~Gv~~V~~~~~~~--------raa~~a~  245 (289)
T COG2513         183 IFPE---ALTDLEEIRAFAEAVP--VPLPANITEFGKT--PLLTVAELA--ELGVKRVSYGLTAF--------RAALKAA  245 (289)
T ss_pred             Eccc---cCCCHHHHHHHHHhcC--CCeeeEeeccCCC--CCcCHHHHH--hcCceEEEECcHHH--------HHHHHHH
Confidence            9865   4566888888887776  442 123333333  333333333  57999997776666        7889999


Q ss_pred             HHHHHHHHhCCC
Q 015894          344 EDVVYMLNGLGV  355 (398)
Q Consensus       344 E~vv~~L~~~Gi  355 (398)
                      +.++..+.+.|.
T Consensus       246 ~~~~~~i~~~gt  257 (289)
T COG2513         246 EQAAREIRREGT  257 (289)
T ss_pred             HHHHHHHHhcCc
Confidence            999998887663

>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase

Probab=95.26  E-value=1.5  Score=42.83  Aligned_cols=179  Identities=13%  Similarity=0.142  Sum_probs=109.4

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEecCC---CCCcccCCCCHHHHHHHHHhc---cCCcEEEEeCCHhhHHHHHHcCCCEEE
Q 015894          117 PAVVKVELIKLLVSSGLAVVEATSFV---SPKWVPQLADAKDVMAAIQNV---EGARFPVLTPNLKGFEAAVAAGAKEVA  190 (398)
Q Consensus       117 ~~~~k~~ia~~L~~aGv~~IEvG~~~---~~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~~n~~~ie~a~~~Gv~~v~  190 (398)
                      +.++.+++|+.|.+.|+.....+.+-   +|...  ....++-++.+++.   .++.+..=..+...++.+.+. ++.+.
T Consensus        37 ~~~~~~~~A~~lk~~~~k~~r~~~~KpRtsp~s~--~g~g~~gl~~l~~~~~~~Gl~~~t~~~d~~~~~~l~~~-~d~lk  113 (260)
T TIGR01361        37 SEEQIMETARFVKEAGAKILRGGAFKPRTSPYSF--QGLGEEGLKLLRRAADEHGLPVVTEVMDPRDVEIVAEY-ADILQ  113 (260)
T ss_pred             CHHHHHHHHHHHHHHHHHhccCceecCCCCCccc--cccHHHHHHHHHHHHHHhCCCEEEeeCChhhHHHHHhh-CCEEE
Confidence            67888999999999998865544332   11100  11123333444422   344444434577788888887 88888


Q ss_pred             EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCC-CHHHHHHHHHHHHhCCCCEEEEcc
Q 015894          191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMV-PPSKVAYVSKQLYDMGCSEISLGD  269 (398)
Q Consensus       191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~-~~~~l~~~a~~l~~~Gad~I~L~D  269 (398)
                      |.....          +.       .++++++.+.|.+|.  ++       .+.. +++++...++.+.+.|.+.|.|+.
T Consensus       114 I~s~~~----------~n-------~~LL~~~a~~gkPVi--lk-------~G~~~t~~e~~~Ave~i~~~Gn~~i~l~~  167 (260)
T TIGR01361       114 IGARNM----------QN-------FELLKEVGKQGKPVL--LK-------RGMGNTIEEWLYAAEYILSSGNGNVILCE  167 (260)
T ss_pred             ECcccc----------cC-------HHHHHHHhcCCCcEE--Ee-------CCCCCCHHHHHHHHHHHHHcCCCcEEEEE
Confidence            743311          11       135566677898875  33       1223 799999999999999999888887


Q ss_pred             C-c-Cc-CCHHHHH--HHHHHHHhhCCCCeEEE-EeCC--ccchHHHHHHHHHHhCCC--EEeecc
Q 015894          270 T-I-GV-GTPGTVI--PMLEAVLDAVPVDKLAV-HFHD--TYGQALSNILASLQMGIS--TVDSSV  325 (398)
Q Consensus       270 T-~-G~-~~P~~v~--~lv~~l~~~~p~~~l~~-H~Hn--d~GlA~ANalaAl~aGa~--~VD~Sv  325 (398)
                      . + .+ -.|....  ..+..+++.++ .||++ =.|-  +.-+..+.+++|+.+||+  +|+.-.
T Consensus       168 rG~s~y~~~~~~~~dl~~i~~lk~~~~-~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~  232 (260)
T TIGR01361       168 RGIRTFEKATRNTLDLSAVPVLKKETH-LPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHP  232 (260)
T ss_pred             CCCCCCCCCCcCCcCHHHHHHHHHhhC-CCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCC
Confidence            4 2 33 2232222  23455665553 57888 4453  234556778899999999  566443

The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.

>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed

Probab=95.24  E-value=1.8  Score=42.09  Aligned_cols=165  Identities=15%  Similarity=0.197  Sum_probs=96.8

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC----CHhhHHHHHHcCCCEE
Q 015894          114 NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP----NLKGFEAAVAAGAKEV  189 (398)
Q Consensus       114 ~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~----n~~~ie~a~~~Gv~~v  189 (398)
                      +.-+..+-.++++...+.|.+.|-+=  ..+++..  .+.+ .+..+++..+  +.++..    ..-+++.+.++|+|.|
T Consensus        65 ~i~~~~~~~~~A~~~~~~GA~aisvl--te~~~f~--g~~~-~l~~v~~~v~--iPvl~kdfi~~~~qi~~a~~~GAD~V  137 (260)
T PRK00278         65 VIREDFDPVEIAKAYEAGGAACLSVL--TDERFFQ--GSLE-YLRAARAAVS--LPVLRKDFIIDPYQIYEARAAGADAI  137 (260)
T ss_pred             ccCCCCCHHHHHHHHHhCCCeEEEEe--cccccCC--CCHH-HHHHHHHhcC--CCEEeeeecCCHHHHHHHHHcCCCEE
Confidence            33344456789999999999998652  1222221  2233 3444554323  334433    3447899999999999


Q ss_pred             EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcc
Q 015894          190 AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGD  269 (398)
Q Consensus       190 ~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~D  269 (398)
                      .+-...=+              .+.+.+++++++++|+.+.+.+.           +.+++    +++.++|++.|.+-.
T Consensus       138 lLi~~~l~--------------~~~l~~li~~a~~lGl~~lvevh-----------~~~E~----~~A~~~gadiIgin~  188 (260)
T PRK00278        138 LLIVAALD--------------DEQLKELLDYAHSLGLDVLVEVH-----------DEEEL----ERALKLGAPLIGINN  188 (260)
T ss_pred             EEEeccCC--------------HHHHHHHHHHHHHcCCeEEEEeC-----------CHHHH----HHHHHcCCCEEEECC
Confidence            98765311              14567889999999998764322           34443    345678999998754


Q ss_pred             -CcCcCCHHHHHHHHHHHHhhCCC-CeEEE--EeCCccchHHHHHHHHHHhCCCEE
Q 015894          270 -TIGVGTPGTVIPMLEAVLDAVPV-DKLAV--HFHDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       270 -T~G~~~P~~v~~lv~~l~~~~p~-~~l~~--H~Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                       ......|.  .+.+..+.+.+|. .++-.  ..+     ...++..+.++|++.|
T Consensus       189 rdl~~~~~d--~~~~~~l~~~~p~~~~vIaegGI~-----t~ed~~~~~~~Gad~v  237 (260)
T PRK00278        189 RNLKTFEVD--LETTERLAPLIPSDRLVVSESGIF-----TPEDLKRLAKAGADAV  237 (260)
T ss_pred             CCcccccCC--HHHHHHHHHhCCCCCEEEEEeCCC-----CHHHHHHHHHcCCCEE
Confidence             11122222  2233444444553 12222  222     2567778888999866

>PRK06852 aldolase; Validated

Probab=95.23  E-value=1.4  Score=44.02  Aligned_cols=131  Identities=15%  Similarity=0.069  Sum_probs=88.4

Q ss_pred             hHHHHHHcC------CCEE--EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHH
Q 015894          177 GFEAAVAAG------AKEV--AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPS  248 (398)
Q Consensus       177 ~ie~a~~~G------v~~v--~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~  248 (398)
                      .++.|++.|      ++-|  +++.. |+.         ..+.++.+.++++.|+++|+.+-+ +++.-|.......+++
T Consensus       120 sVeeAvrlG~~~~~~AdAV~v~v~~G-s~~---------E~~ml~~l~~v~~ea~~~GlPll~-~~yprG~~i~~~~~~~  188 (304)
T PRK06852        120 DVEQVVEFKENSGLNILGVGYTIYLG-SEY---------ESEMLSEAAQIIYEAHKHGLIAVL-WIYPRGKAVKDEKDPH  188 (304)
T ss_pred             cHHHHHhcCCccCCCceEEEEEEecC-CHH---------HHHHHHHHHHHHHHHHHhCCcEEE-EeeccCcccCCCccHH
Confidence            478899988      6654  44444 332         246889999999999999999764 4555554334446789


Q ss_pred             HHHHHHHHHHhCCCCEEEEccCc--CcCCHHHHHHHHHHHHhhCCCCeEEEEeCC--ccchHHHHHHHHHH-hCCCEEe
Q 015894          249 KVAYVSKQLYDMGCSEISLGDTI--GVGTPGTVIPMLEAVLDAVPVDKLAVHFHD--TYGQALSNILASLQ-MGISTVD  322 (398)
Q Consensus       249 ~l~~~a~~l~~~Gad~I~L~DT~--G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hn--d~GlA~ANalaAl~-aGa~~VD  322 (398)
                      .+...++...++|||.|-..=|.  |-..|+.+.+.+...   -| +|+-+=+=-  +.--.+..+..|++ +|+..|.
T Consensus       189 ~ia~aaRiaaELGADIVKv~y~~~~~~g~~e~f~~vv~~~---g~-vpVviaGG~k~~~~e~L~~v~~ai~~aGa~Gv~  263 (304)
T PRK06852        189 LIAGAAGVAACLGADFVKVNYPKKEGANPAELFKEAVLAA---GR-TKVVCAGGSSTDPEEFLKQLYEQIHISGASGNA  263 (304)
T ss_pred             HHHHHHHHHHHHcCCEEEecCCCcCCCCCHHHHHHHHHhC---CC-CcEEEeCCCCCCHHHHHHHHHHHHHHcCCceee
Confidence            99999999999999998766542  224677887766642   12 244442211  22235777888888 9998664

>cd00739 DHPS DHPS subgroup of Pterin binding enzymes

Probab=95.15  E-value=3.4  Score=40.16  Aligned_cols=200  Identities=19%  Similarity=0.197  Sum_probs=108.6

Q ss_pred             EEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCC-CCcccCCCCHHHHHHH----HHhcc---CCcEEEE
Q 015894          100 IVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVS-PKWVPQLADAKDVMAA----IQNVE---GARFPVL  171 (398)
Q Consensus       100 i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~-~~~~p~~~D~~~v~~~----i~~~~---~~~l~~l  171 (398)
                      |+-+|. |-..--|..++.+..++.+..+.+.|.+.|++|.-.. |..-+  -+.++.++.    ++.+.   +..++.=
T Consensus         6 IlN~tp-dSF~dg~~~~~~~~~~~~a~~~~~~GAdiIDIG~~st~p~~~~--i~~~~E~~rl~~~v~~i~~~~~~plSID   82 (257)
T cd00739           6 ILNVTP-DSFSDGGRFLSLDKAVAHAEKMIAEGADIIDIGGESTRPGADP--VSVEEELERVIPVLEALRGELDVLISVD   82 (257)
T ss_pred             EEcCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCC--CCHHHHHHHHHHHHHHHHhcCCCcEEEe
Confidence            444444 4444434458899999999999999999999996432 33211  233333322    33222   3443333


Q ss_pred             eCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC----C--
Q 015894          172 TPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGM----V--  245 (398)
Q Consensus       172 ~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r----~--  245 (398)
                      +.+.+-++.|++.|++.|.=   +|-      .+-+        .++++.++++|..+.  ++..-|.|....    +  
T Consensus        83 T~~~~v~e~al~~G~~iINd---isg------~~~~--------~~~~~l~~~~~~~vV--~m~~~g~p~~~~~~~~~~~  143 (257)
T cd00739          83 TFRAEVARAALEAGADIIND---VSG------GSDD--------PAMLEVAAEYGAPLV--LMHMRGTPKTMQENPYYED  143 (257)
T ss_pred             CCCHHHHHHHHHhCCCEEEe---CCC------CCCC--------hHHHHHHHHcCCCEE--EECCCCCCcccccCCCccc
Confidence            46778889999999886652   111      0000        234566778887765  343222221100    0  


Q ss_pred             ----CHHHHHHHHHHHHhCCCC--EEEEccCcCcC-CHHHHHHHHHHHH---hh-CCCCeEEE------------EeCCc
Q 015894          246 ----PPSKVAYVSKQLYDMGCS--EISLGDTIGVG-TPGTVIPMLEAVL---DA-VPVDKLAV------------HFHDT  302 (398)
Q Consensus       246 ----~~~~l~~~a~~l~~~Gad--~I~L~DT~G~~-~P~~v~~lv~~l~---~~-~p~~~l~~------------H~Hnd  302 (398)
                          -..++.+.++.+.++|++  .|.+==-+|.. ++.+-.++++.++   +. +|. -+++            ..++.
T Consensus       144 ~~~~~~~~~~~~i~~~~~~Gi~~~~Ii~DPg~gf~ks~~~~~~~l~~i~~l~~~~~pi-l~G~SrkSfig~~~~~~~~~r  222 (257)
T cd00739         144 VVDEVLSFLEARLEAAESAGVARNRIILDPGIGFGKTPEHNLELLRRLDELKQLGLPV-LVGASRKSFIGALLGREPKDR  222 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCHHHEEEecCCCcccCHHHHHHHHHHHHHHHhCCCcE-EEEecccHHHHHhcCCCcccc
Confidence                013455666778889985  45442222332 2444455555554   21 232 1332            23455


Q ss_pred             cchHHHHHHHHHHhCCCEEe
Q 015894          303 YGQALSNILASLQMGISTVD  322 (398)
Q Consensus       303 ~GlA~ANalaAl~aGa~~VD  322 (398)
                      .+--++.+..|++.||++|=
T Consensus       223 ~~~t~~~~~~~~~~Ga~iiR  242 (257)
T cd00739         223 DWGTLALSALAAANGADIVR  242 (257)
T ss_pred             chhHHHHHHHHHHcCCCEEE
Confidence            55566666777888888763

DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.

>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase

Probab=95.12  E-value=0.95  Score=45.01  Aligned_cols=210  Identities=11%  Similarity=0.049  Sum_probs=122.8

Q ss_pred             HHHHHHhcCCCEEEEec-CCC--CCcccC--CCCHHHHHHHHHhccC-CcEEEEeC------C----HhhHHHHHHcCCC
Q 015894          124 LIKLLVSSGLAVVEATS-FVS--PKWVPQ--LADAKDVMAAIQNVEG-ARFPVLTP------N----LKGFEAAVAAGAK  187 (398)
Q Consensus       124 ia~~L~~aGv~~IEvG~-~~~--~~~~p~--~~D~~~v~~~i~~~~~-~~l~~l~~------n----~~~ie~a~~~Gv~  187 (398)
                      =++...++|++.+=+++ ..+  ...+|.  +-+.++++..++.+.+ +.+.+++-      +    .+-+++..++|+.
T Consensus        28 SArl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~dtGyG~~~~v~r~V~~~~~aGaa  107 (294)
T TIGR02319        28 SAKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLAVDVPVIMDADAGYGNAMSVWRATREFERVGIV  107 (294)
T ss_pred             HHHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCe
Confidence            35677888999998743 221  122232  2356777777775432 34444442      1    1236777889999


Q ss_pred             EEEEeccCchHH---HhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE
Q 015894          188 EVAIFASASESF---SKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE  264 (398)
Q Consensus       188 ~v~i~~~~Sd~~---~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~  264 (398)
                      .|+|-+.+.+-+   ...+-=.+.++..++++.+.+..++-.+.+.+ =+.++     .....+..++-++...++|||.
T Consensus       108 gi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~A-RTDa~-----~~~g~deaI~Ra~aY~eAGAD~  181 (294)
T TIGR02319       108 GYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIA-RTDAR-----ESFGLDEAIRRSREYVAAGADC  181 (294)
T ss_pred             EEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEE-Eeccc-----ccCCHHHHHHHHHHHHHhCCCE
Confidence            999998865411   11111136788888886665544332222211 01111     1124566777788888999999


Q ss_pred             EEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHH
Q 015894          265 ISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATE  344 (398)
Q Consensus       265 I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE  344 (398)
                      |.+.   |.-+++++..+.+.+.  .|. .+-+-......+=  +.-..-++|+++|-.....+        ++-..++.
T Consensus       182 ifi~---~~~~~~ei~~~~~~~~--~P~-~~nv~~~~~~p~~--s~~eL~~lG~~~v~~~~~~~--------~aa~~a~~  245 (294)
T TIGR02319       182 IFLE---AMLDVEEMKRVRDEID--APL-LANMVEGGKTPWL--TTKELESIGYNLAIYPLSGW--------MAAASVLR  245 (294)
T ss_pred             EEec---CCCCHHHHHHHHHhcC--CCe-eEEEEecCCCCCC--CHHHHHHcCCcEEEEcHHHH--------HHHHHHHH
Confidence            9995   6778888777776653  231 1233332222221  23344467999988777766        45577788


Q ss_pred             HHHHHHHhCCC
Q 015894          345 DVVYMLNGLGV  355 (398)
Q Consensus       345 ~vv~~L~~~Gi  355 (398)
                      +.+..|++.|-
T Consensus       246 ~~~~~l~~~G~  256 (294)
T TIGR02319       246 KLFTELREAGT  256 (294)
T ss_pred             HHHHHHHHcCC
Confidence            88888876553

This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.

>PRK09250 fructose-bisphosphate aldolase; Provisional

Probab=95.12  E-value=1.2  Score=45.32  Aligned_cols=83  Identities=16%  Similarity=0.119  Sum_probs=60.3

Q ss_pred             hHHHHHHcCCCEEEE--eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCC----CCCHHHH
Q 015894          177 GFEAAVAAGAKEVAI--FASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEG----MVPPSKV  250 (398)
Q Consensus       177 ~ie~a~~~Gv~~v~i--~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~----r~~~~~l  250 (398)
                      .++.|++.|++-|.+  +.. |+.         ..+.++.+.++++.|+++|+.+.+ +++.-|.....    .++++.+
T Consensus       151 sVedAlrLGAdAV~~tvy~G-s~~---------E~~ml~~l~~i~~ea~~~GlPlv~-~~YpRG~~i~~~~d~~~~~d~I  219 (348)
T PRK09250        151 SVEDALRLGAVAVGATIYFG-SEE---------SRRQIEEISEAFEEAHELGLATVL-WSYLRNSAFKKDGDYHTAADLT  219 (348)
T ss_pred             cHHHHHHCCCCEEEEEEecC-CHH---------HHHHHHHHHHHHHHHHHhCCCEEE-EecccCcccCCcccccccHHHH
Confidence            588999999996655  443 332         236788999999999999999764 45555432222    2347899


Q ss_pred             HHHHHHHHhCCCCEEEEccC
Q 015894          251 AYVSKQLYDMGCSEISLGDT  270 (398)
Q Consensus       251 ~~~a~~l~~~Gad~I~L~DT  270 (398)
                      ...++...++|||.|-..=|
T Consensus       220 a~AaRiaaELGADIVKv~yp  239 (348)
T PRK09250        220 GQANHLAATIGADIIKQKLP  239 (348)
T ss_pred             HHHHHHHHHHcCCEEEecCC
Confidence            99999999999998766543

>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM

Probab=95.12  E-value=1.3  Score=39.46  Aligned_cols=146  Identities=20%  Similarity=0.161  Sum_probs=85.4

Q ss_pred             CCCHHHHHHHHHHHHhcCC-----CEEEEecCCCCCcccCCCCHHHHHHHHHhcc----CCcEEEEeC----CHhhHHHH
Q 015894          115 IVPAVVKVELIKLLVSSGL-----AVVEATSFVSPKWVPQLADAKDVMAAIQNVE----GARFPVLTP----NLKGFEAA  181 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv-----~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~----~~~l~~l~~----n~~~ie~a  181 (398)
                      ..+.++..+.++.+.+.|.     +.+-++... |...| .....++++.+++..    +..+...+.    +.+-++..
T Consensus        29 ~~~~e~i~~~~~~~~~~~~~~~~~~~i~~~gg~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~tn~~~~~~~~~~~l  106 (216)
T smart00729       29 SRYLEALVREIELLAEKGEKEILVGTVFIGGGT-PTLLS-PEQLEELLEAIREILGLADDVEITIETRPGTLTEELLEAL  106 (216)
T ss_pred             HHHHHHHHHHHHHHHhcccCCcceeEEEECCCC-CCCCC-HHHHHHHHHHHHHhCCCCCCeEEEEEeCcccCCHHHHHHH
Confidence            4566677777777755554     333333221 11111 001355666666443    233333332    34568888


Q ss_pred             HHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCC-CcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC
Q 015894          182 VAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELS-IPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM  260 (398)
Q Consensus       182 ~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G-~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~  260 (398)
                      .+.|.+.+.+.+-..+-.....++..  ..++.+.+.++.+++.| +.+...++  .|-+   ..+.+.+.++++.+.+.
T Consensus       107 ~~~~~~~i~isl~~~~~~~~~~~~~~--~~~~~~~~~i~~~~~~g~~~v~~~~~--~g~~---~~~~~~~~~~~~~~~~~  179 (216)
T smart00729      107 KEAGVNRVSLGVQSGSDEVLKAINRG--HTVEDVLEAVEKLREAGPIKVSTDLI--VGLP---GETEEDFEETLKLLKEL  179 (216)
T ss_pred             HHcCCCeEEEecccCCHHHHHHhcCC--CCHHHHHHHHHHHHHhCCcceEEeEE--ecCC---CCCHHHHHHHHHHHHHc
Confidence            99999988886654322222223222  23467778888999999 77765555  3333   23678999999999999


Q ss_pred             CCCEEEEcc
Q 015894          261 GCSEISLGD  269 (398)
Q Consensus       261 Gad~I~L~D  269 (398)
                      |++.|.+..
T Consensus       180 ~~~~i~~~~  188 (216)
T smart00729      180 GPDRVSIFP  188 (216)
T ss_pred             CCCeEEeee
Confidence            999876644

This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.

>PRK14057 epimerase; Provisional

Probab=95.09  E-value=0.57  Score=45.60  Aligned_cols=174  Identities=14%  Similarity=0.128  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHHhcCCCEEEE----ecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCCH-hhHHHHHHcCCCEEEEe
Q 015894          118 AVVKVELIKLLVSSGLAVVEA----TSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNL-KGFEAAVAAGAKEVAIF  192 (398)
Q Consensus       118 ~~~k~~ia~~L~~aGv~~IEv----G~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n~-~~ie~a~~~Gv~~v~i~  192 (398)
                      ...-.+-++.|.+.|++.+=+    |.|+     |++.=..++++.++......+-.++.+. .-++..+++|++.|.+.
T Consensus        31 ~~~L~~el~~l~~~g~d~lHiDVMDG~FV-----PNitfGp~~i~~i~~~~p~DvHLMV~~P~~~i~~~~~aGad~It~H  105 (254)
T PRK14057         31 WIALHRYLQQLEALNQPLLHLDLMDGQFC-----PQFTVGPWAVGQLPQTFIKDVHLMVADQWTAAQACVKAGAHCITLQ  105 (254)
T ss_pred             HHHHHHHHHHHHHCCCCEEEEeccCCccC-----CccccCHHHHHHhccCCCeeEEeeeCCHHHHHHHHHHhCCCEEEEe
Confidence            344456788889999997666    4444     4433223455555531112233445554 45788899999988875


Q ss_pred             ccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-------EEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE
Q 015894          193 ASASESFSKSNINCTIEDSLIRYRDVALAARELSIP-------VRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEI  265 (398)
Q Consensus       193 ~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~-------v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I  265 (398)
                      .-+.                ..+.++++++|++|.+       +.+.+.  + +|.   ++++.+.+++..     +|.|
T Consensus       106 ~Ea~----------------~~~~~~l~~Ir~~G~k~~~~~~~~kaGlA--l-nP~---Tp~e~i~~~l~~-----vD~V  158 (254)
T PRK14057        106 AEGD----------------IHLHHTLSWLGQQTVPVIGGEMPVIRGIS--L-CPA---TPLDVIIPILSD-----VEVI  158 (254)
T ss_pred             eccc----------------cCHHHHHHHHHHcCCCcccccccceeEEE--E-CCC---CCHHHHHHHHHh-----CCEE
Confidence            4322                2234667888888874       222333  2 242   467777776643     3433


Q ss_pred             EE----ccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          266 SL----GDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       266 ~L----~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      -+    +.-.|...=..+.+-|+.+++..+...+.+-.-=|=|.-..|+-...++||+++=+
T Consensus       159 LvMtV~PGfgGQ~Fi~~~l~KI~~lr~~~~~~~~~~~IeVDGGI~~~ti~~l~~aGad~~V~  220 (254)
T PRK14057        159 QLLAVNPGYGSKMRSSDLHERVAQLLCLLGDKREGKIIVIDGSLTQDQLPSLIAQGIDRVVS  220 (254)
T ss_pred             EEEEECCCCCchhccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHCCCCEEEE
Confidence            22    33445555566666777777655432233334447788888999999999997644

>TIGR01210 conserved hypothetical protein TIGR01210

Probab=95.03  E-value=1.1  Score=44.81  Aligned_cols=147  Identities=15%  Similarity=0.167  Sum_probs=82.2

Q ss_pred             CHHHHHH-HHHHHHhcCCCE-------EEEecCCCCCcccCCCCHHHHHHHHHhccCC-cEEEEeC----CHhhHHHHHH
Q 015894          117 PAVVKVE-LIKLLVSSGLAV-------VEATSFVSPKWVPQLADAKDVMAAIQNVEGA-RFPVLTP----NLKGFEAAVA  183 (398)
Q Consensus       117 ~~~~k~~-ia~~L~~aGv~~-------IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~-~l~~l~~----n~~~ie~a~~  183 (398)
                      +.+...+ |-..+.+.+.+.       +--|+|..|..+| .....++++.++..+.. ++.+-++    +.+.++...+
T Consensus        47 s~e~i~~~i~~~~~~~~~~~~~~~ikif~sgsf~D~~~~~-~~~~~~i~~~l~~~~~~~~i~~esrpd~i~~e~L~~l~~  125 (313)
T TIGR01210        47 TEENLINQFDEAIEKYKEKIKDFVIKIFTSGSFLDDREVP-KETRNYIFEKIAQRDNLKEVVVESRPEFIDEEKLEELRK  125 (313)
T ss_pred             ChhHHHHHHHHHHHHhhcccccEEEEEecCCCcCCcCcCC-HHHHHHHHHHHHhcCCcceEEEEeCCCcCCHHHHHHHHH
Confidence            4444444 444445555431       2123454444443 11123444444443322 3344343    2456777888


Q ss_pred             cCCC-EEEEe-ccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC-CCHHHHHHHHHHHHhC
Q 015894          184 AGAK-EVAIF-ASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGM-VPPSKVAYVSKQLYDM  260 (398)
Q Consensus       184 ~Gv~-~v~i~-~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r-~~~~~l~~~a~~l~~~  260 (398)
                      +|+. .|.+- =+.||.-++..+|+..  ..+.+.++++.++++|+.+.++++  +|.|..+. -+.+.+.+.++.+.++
T Consensus       126 aG~~~~v~iG~ES~~d~~L~~~inKg~--t~~~~~~ai~~~~~~Gi~v~~~~i--~G~P~~se~ea~ed~~~ti~~~~~l  201 (313)
T TIGR01210       126 IGVNVEVAVGLETANDRIREKSINKGS--TFEDFIRAAELARKYGAGVKAYLL--FKPPFLSEKEAIADMISSIRKCIPV  201 (313)
T ss_pred             cCCCEEEEEecCcCCHHHHHHhhCCCC--CHHHHHHHHHHHHHcCCcEEEEEE--ecCCCCChhhhHHHHHHHHHHHHhc
Confidence            9987 67773 3456655533344422  234556778899999999988887  67675432 2356666678888888


Q ss_pred             CCCEEEEcc
Q 015894          261 GCSEISLGD  269 (398)
Q Consensus       261 Gad~I~L~D  269 (398)
                      + +.|.+--
T Consensus       202 ~-~~vs~~~  209 (313)
T TIGR01210       202 T-DTVSINP  209 (313)
T ss_pred             C-CcEEEEC
Confidence            8 7776543

This family of exclusively archaeal proteins has no characterized close homologs. Several rounds of PSI-BLAST with a stringent cutoff of 1e-8 shows apparent similarity of the central region of this family to the central regions of the oxygen-independent coproporphyrinogen III dehydrogenase HemN and to other enzymes.

>TIGR03471 HpnJ hopanoid biosynthesis associated radical SAM protein HpnJ

Probab=95.02  E-value=0.88  Score=47.81  Aligned_cols=157  Identities=13%  Similarity=0.170  Sum_probs=92.6

Q ss_pred             CCHHHHHHHHHHHHhc--CCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC---CHhhHHHHHHcCCCEEE
Q 015894          116 VPAVVKVELIKLLVSS--GLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP---NLKGFEAAVAAGAKEVA  190 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~a--Gv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~---n~~~ie~a~~~Gv~~v~  190 (398)
                      .+.+..++=++.+.+.  |++.|-++-   ..+........++.+.+++. +..+.+.++   +.+-++...++|+..|.
T Consensus       227 rs~e~V~~Ei~~~~~~~~~~~~i~f~D---d~f~~~~~~~~~l~~~l~~~-~i~~~~~~~~~~~~e~l~~l~~aG~~~v~  302 (472)
T TIGR03471       227 RSAESVIEEVKYALENFPEVREFFFDD---DTFTDDKPRAEEIARKLGPL-GVTWSCNARANVDYETLKVMKENGLRLLL  302 (472)
T ss_pred             CCHHHHHHHHHHHHHhcCCCcEEEEeC---CCCCCCHHHHHHHHHHHhhc-CceEEEEecCCCCHHHHHHHHHcCCCEEE
Confidence            4666666655555543  788776641   11000001123444444432 344444333   34557888899999888


Q ss_pred             Eec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcc
Q 015894          191 IFA-SASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGD  269 (398)
Q Consensus       191 i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~D  269 (398)
                      +-+ +.|+-.++ .+++..  ..+.+.++++.++++|+.+.++++  +|.|.+   +++.+.+.++.+.+.+.+.+.+  
T Consensus       303 iGiES~s~~~L~-~~~K~~--~~~~~~~~i~~~~~~Gi~v~~~~I--iGlPge---t~e~~~~ti~~~~~l~~~~~~~--  372 (472)
T TIGR03471       303 VGYESGDQQILK-NIKKGL--TVEIARRFTRDCHKLGIKVHGTFI--LGLPGE---TRETIRKTIDFAKELNPHTIQV--  372 (472)
T ss_pred             EcCCCCCHHHHH-HhcCCC--CHHHHHHHHHHHHHCCCeEEEEEE--EeCCCC---CHHHHHHHHHHHHhcCCCceee--
Confidence            744 44444333 344431  244566788999999999886666  677765   5677888888888888887653  


Q ss_pred             CcCcCCHHHHHHHHHHHHh
Q 015894          270 TIGVGTPGTVIPMLEAVLD  288 (398)
Q Consensus       270 T~G~~~P~~v~~lv~~l~~  288 (398)
                        ..++|.-=..+.+.+++
T Consensus       373 --~~l~P~PGT~l~~~~~~  389 (472)
T TIGR03471       373 --SLAAPYPGTELYDQAKQ  389 (472)
T ss_pred             --eecccCCCcHHHHHHHH
Confidence              45666544455555554

One of the well-described hopanoid intermediates is bacteriohopanetetrol. In the conversion from hopene several reactions must occur in the side chain for which a radical mechanism might be reasonable. These include the four (presumably anaerobic) hydroxylations and a methyl shift.

>TIGR03849 arch_ComA phosphosulfolactate synthase

Probab=94.98  E-value=0.45  Score=45.82  Aligned_cols=145  Identities=15%  Similarity=0.105  Sum_probs=93.0

Q ss_pred             CCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecC-CCCCCCCHHHHHHHHHHHHhCCCCE
Q 015894          186 AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGC-PVEGMVPPSKVAYVSKQLYDMGCSE  264 (398)
Q Consensus       186 v~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~-~~~~r~~~~~l~~~a~~l~~~Gad~  264 (398)
                      +|.+-+....+-.+        +++   -+++.++.|+++|+.|.      +|. ..+.......+.++.+.+.++|.+.
T Consensus        25 ID~lKfg~Gt~~l~--------~~~---~l~eki~la~~~~V~v~------~GGtl~E~~~~q~~~~~Yl~~~k~lGf~~   87 (237)
T TIGR03849        25 ITFVKFGWGTSALI--------DRD---IVKEKIEMYKDYGIKVY------PGGTLFEIAHSKGKFDEYLNECDELGFEA   87 (237)
T ss_pred             eeeEEecCceEeec--------cHH---HHHHHHHHHHHcCCeEe------CCccHHHHHHHhhhHHHHHHHHHHcCCCE
Confidence            56666655544432        222   35678999999999885      221 1111122345566777888999999


Q ss_pred             EEEccCcCcCCHHHHHHHHHHHHhh-C-CCCeEEEEeC-----CccchHHHHHHHHHHhCCCE--Eeeccc----cCCCC
Q 015894          265 ISLGDTIGVGTPGTVIPMLEAVLDA-V-PVDKLAVHFH-----DTYGQALSNILASLQMGIST--VDSSVS----GLGGC  331 (398)
Q Consensus       265 I~L~DT~G~~~P~~v~~lv~~l~~~-~-p~~~l~~H~H-----nd~GlA~ANalaAl~aGa~~--VD~Sv~----GlGec  331 (398)
                      |-|.|.+--+.+.+-.++|+.++++ + +-..++....     -+...-+-.+-..++|||+.  |++-=.    |+=+ 
T Consensus        88 IEiS~G~~~i~~~~~~rlI~~~~~~g~~v~~EvG~K~~~~~~~~~~~~~i~~~~~~LeAGA~~ViiEarEsg~~~Gi~~-  166 (237)
T TIGR03849        88 VEISDGSMEISLEERCNLIERAKDNGFMVLSEVGKKSPEKDSELTPDDRIKLINKDLEAGADYVIIEGRESGKNIGLFD-  166 (237)
T ss_pred             EEEcCCccCCCHHHHHHHHHHHHhCCCeEeccccccCCcccccCCHHHHHHHHHHHHHCCCcEEEEeehhcCCCcceeC-
Confidence            9999999999999999999999965 2 1112454443     12233455666779999994  466433    4444 


Q ss_pred             CCCCCCCCCccHHHHHHHHHhC
Q 015894          332 PYAKGASGNVATEDVVYMLNGL  353 (398)
Q Consensus       332 p~a~graGNa~lE~vv~~L~~~  353 (398)
                           ..|+.-...+-..++..
T Consensus       167 -----~~g~~r~d~v~~i~~~l  183 (237)
T TIGR03849       167 -----EKGNVKEDELDVLAENV  183 (237)
T ss_pred             -----CCCCCchHHHHHHHhhC
Confidence                 56777766555555433

This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.

>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase

Probab=94.97  E-value=1.1  Score=45.42  Aligned_cols=142  Identities=11%  Similarity=0.083  Sum_probs=85.0

Q ss_pred             CCHHHHHHHHHHHHhcC---CCEEEEecCCCCCcccCCCCHHHHHHHHHh-c---cCCcEEEEe-C---CHhhHHHHHHc
Q 015894          116 VPAVVKVELIKLLVSSG---LAVVEATSFVSPKWVPQLADAKDVMAAIQN-V---EGARFPVLT-P---NLKGFEAAVAA  184 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aG---v~~IEvG~~~~~~~~p~~~D~~~v~~~i~~-~---~~~~l~~l~-~---n~~~ie~a~~~  184 (398)
                      +......+|...+...|   ++.|=+|-. .|..++ ..+.+++++.+++ .   ++..+++-+ +   +.+.++...++
T Consensus        32 y~~~l~~Ei~~~~~~~~~~~v~~i~~GGG-tPs~l~-~~~l~~ll~~i~~~~~~~~~~eitie~np~~lt~e~l~~l~~~  109 (360)
T TIGR00539        32 YTQALCQDLKHALSQTDQEPLESIFIGGG-TPNTLS-VEAFERLFESIYQHASLSDDCEITTEANPELITAEWCKGLKGA  109 (360)
T ss_pred             HHHHHHHHHHHHHHhcCCCcccEEEeCCC-chhcCC-HHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHc
Confidence            44555556665555556   556655432 121111 0223445555543 1   345555544 2   34567888899


Q ss_pred             CCCEEEEecc-CchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCC
Q 015894          185 GAKEVAIFAS-ASESFSKSNINCTIEDSLIRYRDVALAARELSIP-VRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGC  262 (398)
Q Consensus       185 Gv~~v~i~~~-~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~-v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Ga  262 (398)
                      |+.+|.+-+- .++-.. ..+|+.  ...+.+.++++.+++.|+. +.+.++  +|.|..   +.+.+.+.++.+.++|+
T Consensus       110 Gv~risiGvqS~~~~~l-~~lgR~--~~~~~~~~ai~~l~~~G~~~v~~dli--~GlPgq---t~~~~~~~l~~~~~l~~  181 (360)
T TIGR00539       110 GINRLSLGVQSFRDDKL-LFLGRQ--HSAKNIAPAIETALKSGIENISLDLM--YGLPLQ---TLNSLKEELKLAKELPI  181 (360)
T ss_pred             CCCEEEEecccCChHHH-HHhCCC--CCHHHHHHHHHHHHHcCCCeEEEecc--CCCCCC---CHHHHHHHHHHHHccCC
Confidence            9999988655 444322 334431  2244556678899999996 665555  666654   57888888889999999


Q ss_pred             CEEEE
Q 015894          263 SEISL  267 (398)
Q Consensus       263 d~I~L  267 (398)
                      +.|.+
T Consensus       182 ~~is~  186 (360)
T TIGR00539       182 NHLSA  186 (360)
T ss_pred             CEEEe
Confidence            88764

Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.

>cd00423 Pterin_binding Pterin binding enzymes

Probab=94.95  E-value=2.1  Score=41.45  Aligned_cols=134  Identities=20%  Similarity=0.177  Sum_probs=77.0

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCC-CCcccCCCC--HHHHHHHHHhc---cCCcEEEEeCCHhhHHHHHHcCCCE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVS-PKWVPQLAD--AKDVMAAIQNV---EGARFPVLTPNLKGFEAAVAAGAKE  188 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~-~~~~p~~~D--~~~v~~~i~~~---~~~~l~~l~~n~~~ie~a~~~Gv~~  188 (398)
                      ..+.+..++.+..+.+.|.+.|++|.... |..-|.-.+  .+.+...++.+   .+..++.=+.+.+-++.+++.|++.
T Consensus        20 ~~~~~~~~~~a~~~~~~GAdiIDvG~~st~p~~~~~~~~~E~~rl~~~v~~l~~~~~~piSIDT~~~~v~~aaL~~g~~i   99 (258)
T cd00423          20 FLSLDKALEHARRMVEEGADIIDIGGESTRPGAEPVSVEEELERVIPVLRALAGEPDVPISVDTFNAEVAEAALKAGADI   99 (258)
T ss_pred             cCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhcCCCeEEEeCCcHHHHHHHHHhCCCE
Confidence            46889999999999999999999996543 432221111  12233344433   2444444456788889999999775


Q ss_pred             EEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC------CCCC----HHHHHHHHHHHH
Q 015894          189 VAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE------GMVP----PSKVAYVSKQLY  258 (398)
Q Consensus       189 v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~------~r~~----~~~l~~~a~~l~  258 (398)
                      |.=   +|-      .+.+        .++++.++++|..+.  ++..-+.+..      ....    .+++.+.++.+.
T Consensus       100 INd---is~------~~~~--------~~~~~l~~~~~~~vV--~m~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~  160 (258)
T cd00423         100 IND---VSG------GRGD--------PEMAPLAAEYGAPVV--LMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAAT  160 (258)
T ss_pred             EEe---CCC------CCCC--------hHHHHHHHHcCCCEE--EECcCCCCcccccCCCcchHHHHHHHHHHHHHHHHH
Confidence            542   221      0101        244567788887765  3322111110      0001    356667777888


Q ss_pred             hCCCC--EEEE
Q 015894          259 DMGCS--EISL  267 (398)
Q Consensus       259 ~~Gad--~I~L  267 (398)
                      ++|++  .|.+
T Consensus       161 ~~Gi~~~~Iil  171 (258)
T cd00423         161 EAGIPPEDIIL  171 (258)
T ss_pred             HcCCCHHHEEE
Confidence            89963  4544

This family includes dihydropteroate synthase (DHPS) and cobalamin-dependent methyltransferases such as methyltetrahydrofolate, corrinoid iron-sulfur protein methyltransferase (MeTr) and methionine synthase (MetH). DHPS, a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS. Cobalamin-dependent methyltransferases catalyze the transfer of a methyl group via a methyl- cob(III)amide intermediate. These include MeTr, a functional heterodimer, and the folate binding domain of MetH.

>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein

Probab=94.93  E-value=0.11  Score=54.89  Aligned_cols=78  Identities=19%  Similarity=0.187  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeecccc
Q 015894          248 SKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSG  327 (398)
Q Consensus       248 ~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~G  327 (398)
                      +...+.++.+.+.|++.|.+ |++- ..|..+.++++.+++.+|++++-.    ..+.-...+..++++||+.|++.+.|
T Consensus       224 ~~~~~ra~~Lv~aGVd~i~~-D~a~-g~~~~~~~~i~~i~~~~~~~~vi~----g~~~t~~~~~~l~~~G~d~i~vg~g~  297 (475)
T TIGR01303       224 GDVGGKAKALLDAGVDVLVI-DTAH-GHQVKMISAIKAVRALDLGVPIVA----GNVVSAEGVRDLLEAGANIIKVGVGP  297 (475)
T ss_pred             ccHHHHHHHHHHhCCCEEEE-eCCC-CCcHHHHHHHHHHHHHCCCCeEEE----eccCCHHHHHHHHHhCCCEEEECCcC
Confidence            34557788899999999887 7777 888999999999999999877776    55677788888999999999976654


Q ss_pred             CCCC
Q 015894          328 LGGC  331 (398)
Q Consensus       328 lGec  331 (398)
                      =.-|
T Consensus       298 Gs~~  301 (475)
T TIGR01303       298 GAMC  301 (475)
T ss_pred             Cccc
Confidence            4444

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.

>COG0320 LipA Lipoate synthase [Coenzyme metabolism]

Probab=94.92  E-value=1.3  Score=43.52  Aligned_cols=139  Identities=22%  Similarity=0.272  Sum_probs=93.1

Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCc---ccCCCCHHHHHHHHHh-ccCCcEEEEeCCH----hhHHHHHH
Q 015894          112 EKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKW---VPQLADAKDVMAAIQN-VEGARFPVLTPNL----KGFEAAVA  183 (398)
Q Consensus       112 ~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~---~p~~~D~~~v~~~i~~-~~~~~l~~l~~n~----~~ie~a~~  183 (398)
                      ....++.++-.++|+...++|++++-+++-...+.   ..+  -+.+.++.+++ .|++++-+|++.-    .-++..++
T Consensus        93 ~P~~lD~~EP~rvAeaV~~mgLkyVViTsVdRDDL~DGGA~--hfa~~i~~Ire~~P~t~iEvL~PDF~G~~~al~~v~~  170 (306)
T COG0320          93 RPNPLDPDEPERVAEAVKDMGLKYVVITSVDRDDLPDGGAQ--HFAECIRAIRELNPQTTIEVLTPDFRGNDDALEIVAD  170 (306)
T ss_pred             CCCCCCCchHHHHHHHHHHhCCCeEEEEeeccccccccchH--HHHHHHHHHHhhCCCceEEEeCccccCCHHHHHHHHh
Confidence            34578999999999999999999999998654321   111  13456677774 5789999999853    34566667


Q ss_pred             cCCCEE--------EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC--cEEEEEeeeecCCCCCCCCHHHHHHH
Q 015894          184 AGAKEV--------AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSI--PVRGYLSCVVGCPVEGMVPPSKVAYV  253 (398)
Q Consensus       184 ~Gv~~v--------~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~--~v~~~l~~~fg~~~~~r~~~~~l~~~  253 (398)
                      +|.+.+        +++-.+       --+.+.+.+|    ++.+.+|+.+-  ..-..||.-.|      =+.+++.+.
T Consensus       171 ~~pdV~nHNvETVprL~~~V-------Rp~A~Y~~SL----~~L~~~k~~~P~i~TKSgiMlGLG------Et~~Ev~e~  233 (306)
T COG0320         171 AGPDVFNHNVETVPRLYPRV-------RPGATYERSL----SLLERAKELGPDIPTKSGLMVGLG------ETDEEVIEV  233 (306)
T ss_pred             cCcchhhcccccchhccccc-------CCCCcHHHHH----HHHHHHHHhCCCcccccceeeecC------CcHHHHHHH
Confidence            777643        232222       1234455555    45578888873  33344553232      146888899


Q ss_pred             HHHHHhCCCCEEEEcc
Q 015894          254 SKQLYDMGCSEISLGD  269 (398)
Q Consensus       254 a~~l~~~Gad~I~L~D  269 (398)
                      .+-+.+.|+|.+.|.-
T Consensus       234 m~DLr~~gvdilTiGQ  249 (306)
T COG0320         234 MDDLRSAGVDILTIGQ  249 (306)
T ss_pred             HHHHHHcCCCEEEecc
Confidence            9999999999998764

>cd01320 ADA Adenosine deaminase (ADA) is a monomeric zinc dependent enzyme which catalyzes the irreversible hydrolytic deamination of both adenosine, as well as desoxyadenosine, to ammonia and inosine or desoxyinosine, respectively

Probab=94.91  E-value=2.2  Score=42.16  Aligned_cols=131  Identities=15%  Similarity=0.080  Sum_probs=78.9

Q ss_pred             hHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHH-HhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 015894          177 GFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAA-RELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSK  255 (398)
Q Consensus       177 ~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~a-k~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~  255 (398)
                      .++.+++.|+..+.+...  +. .....+.+.++.++.+.+.++.+ ++.|+.+...++..   .   ..+++...+..+
T Consensus        78 ~~~e~~~~Gvt~~E~~~~--p~-~~~~~~~~~~~~~~~~~~ai~~~~~~~gi~~~l~~~~~---~---~~~~~~~~~~~~  148 (325)
T cd01320          78 YLEDAAADGVVYAEIRFS--PQ-LHTRRGLSFDEVVEAVLRGLDEAEAEFGIKARLILCGL---R---HLSPESAQETLE  148 (325)
T ss_pred             HHHHHHHcCCEEEEEEeC--ch-hhccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEec---C---CCCHHHHHHHHH
Confidence            456677889977665433  21 11245778899998887777766 45688776544321   1   124566666666


Q ss_pred             HHHhCCCCEEEEccCc---CcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHH-hCCCE
Q 015894          256 QLYDMGCSEISLGDTI---GVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQ-MGIST  320 (398)
Q Consensus       256 ~l~~~Gad~I~L~DT~---G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~-aGa~~  320 (398)
                      .+..++.+.+.=.|..   ....+..+..++...++.  +.++.+|+..+.+  ..+...|++ +|+++
T Consensus       149 ~~~~~~~~~vvg~~l~~~~~~~~~~~~~~~~~~A~~~--g~~v~~H~~E~~~--~~~~~~a~~~~g~~~  213 (325)
T cd01320         149 LALKYRDKGVVGFDLAGDEVGFPPEKFVRAFQRAREA--GLRLTAHAGEAGG--PESVRDALDLLGAER  213 (325)
T ss_pred             HHHhccCCCEEEeecCCCCCCCCHHHHHHHHHHHHHC--CCceEEeCCCCCC--HHHHHHHHHHcCCcc
Confidence            6655554433223332   234677888888777764  4568888876643  234456666 78754

ADA plays an important role in the purine pathway. Low, as well as high levels of ADA activity have been linked to several diseases.

>TIGR02317 prpB methylisocitrate lyase

Probab=94.87  E-value=0.77  Score=45.44  Aligned_cols=206  Identities=14%  Similarity=0.079  Sum_probs=119.5

Q ss_pred             HHHHHhcCCCEEEEecCC-C-CCcccC--CCCHHHHHHHHHhccC-CcEEEEeC------CH----hhHHHHHHcCCCEE
Q 015894          125 IKLLVSSGLAVVEATSFV-S-PKWVPQ--LADAKDVMAAIQNVEG-ARFPVLTP------NL----KGFEAAVAAGAKEV  189 (398)
Q Consensus       125 a~~L~~aGv~~IEvG~~~-~-~~~~p~--~~D~~~v~~~i~~~~~-~~l~~l~~------n~----~~ie~a~~~Gv~~v  189 (398)
                      ++...++|++.|=++++. + ....|.  +-+.+++++.++++.+ +.+.+++-      +.    +-++...++|+..|
T Consensus        26 Ari~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~~tv~~~~~aG~agi  105 (285)
T TIGR02317        26 ALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRVTDLPLLVDADTGFGEAFNVARTVREMEDAGAAAV  105 (285)
T ss_pred             HHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeEE
Confidence            456678899999997542 1 112232  2356778877775432 33444442      22    24677889999999


Q ss_pred             EEeccCchH---HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC-CCCCHHHHHHHHHHHHhCCCCEE
Q 015894          190 AIFASASES---FSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE-GMVPPSKVAYVSKQLYDMGCSEI  265 (398)
Q Consensus       190 ~i~~~~Sd~---~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~-~r~~~~~l~~~a~~l~~~Gad~I  265 (398)
                      +|-+.+.+-   |...+-=.+.++..++++.+.+..+  +..+.  |..=.   |+ .....+...+=++...++|||.|
T Consensus       106 ~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~--~~d~~--IiART---Da~~~~g~deAI~Ra~ay~~AGAD~v  178 (285)
T TIGR02317       106 HIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKR--DEDFV--IIART---DARAVEGLDAAIERAKAYVEAGADMI  178 (285)
T ss_pred             EEecCCCccccCCCCCccccCHHHHHHHHHHHHHhcc--CCCEE--EEEEc---CcccccCHHHHHHHHHHHHHcCCCEE
Confidence            999887541   1111111267788888765554433  22221  11100   11 12235666666778888999999


Q ss_pred             EEccCcCcCCHHHHHHHHHHHHhhCCCCeE--EEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccH
Q 015894          266 SLGDTIGVGTPGTVIPMLEAVLDAVPVDKL--AVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVAT  343 (398)
Q Consensus       266 ~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l--~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~l  343 (398)
                      .+.   |.-+++++..+.+.+    | .|+  -+-.....++-  +.-..-++|+++|-....++        ++-+.++
T Consensus       179 fi~---g~~~~e~i~~~~~~i----~-~Pl~~n~~~~~~~p~~--s~~eL~~lGv~~v~~~~~~~--------~aa~~a~  240 (285)
T TIGR02317       179 FPE---ALTSLEEFRQFAKAV----K-VPLLANMTEFGKTPLF--TADELREAGYKMVIYPVTAF--------RAMNKAA  240 (285)
T ss_pred             EeC---CCCCHHHHHHHHHhc----C-CCEEEEeccCCCCCCC--CHHHHHHcCCcEEEEchHHH--------HHHHHHH
Confidence            985   556777777666554    3 234  22222221111  23344467999998776666        5567778


Q ss_pred             HHHHHHHHhCCC
Q 015894          344 EDVVYMLNGLGV  355 (398)
Q Consensus       344 E~vv~~L~~~Gi  355 (398)
                      ++.+..++..|.
T Consensus       241 ~~~~~~l~~~g~  252 (285)
T TIGR02317       241 EAVYNEIKEHGT  252 (285)
T ss_pred             HHHHHHHHHcCC
Confidence            888888876654

Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.

>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed

Probab=94.86  E-value=4  Score=39.39  Aligned_cols=138  Identities=17%  Similarity=0.088  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCC-CCCCC-------HHHHHHHHHHHHhCCCCE-EEEccCcCcCCHHH
Q 015894          208 IEDSLIRYRDVALAARELSIPVRGYLSCVVGCPV-EGMVP-------PSKVAYVSKQLYDMGCSE-ISLGDTIGVGTPGT  278 (398)
Q Consensus       208 ~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~-~~r~~-------~~~l~~~a~~l~~~Gad~-I~L~DT~G~~~P~~  278 (398)
                      +++.++.+++.++.|+++|..+.. +.   +.+. .+...       .+.+.++++.+.++|+.. +--.+..-..++.+
T Consensus        94 r~~~~~~~~~~i~~a~~lG~~~i~-~~---~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~iE~~~~~~~~~~~~  169 (283)
T PRK13209         94 RAQALEIMRKAIQLAQDLGIRVIQ-LA---GYDVYYEQANNETRRRFIDGLKESVELASRASVTLAFEIMDTPFMNSISK  169 (283)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCEEE-EC---CccccccccHHHHHHHHHHHHHHHHHHHHHhCCEEEEeecCCcccCCHHH
Confidence            567788899999999999988542 21   1111 01111       234455667777788742 22233334446777


Q ss_pred             HHHHHHHHHhhCCCCeEEE---EeCCccchHHHHHHHHHHhC---CCEEeeccccCCCCC-CCCCCCCCccHHHHHHHHH
Q 015894          279 VIPMLEAVLDAVPVDKLAV---HFHDTYGQALSNILASLQMG---ISTVDSSVSGLGGCP-YAKGASGNVATEDVVYMLN  351 (398)
Q Consensus       279 v~~lv~~l~~~~p~~~l~~---H~Hnd~GlA~ANalaAl~aG---a~~VD~Sv~GlGecp-~a~graGNa~lE~vv~~L~  351 (398)
                      +.++++.+..  |.+.+.+   |.+- .|...+   .+++..   +..|+..=.--|. + ..+-+.|..+...++..|+
T Consensus       170 ~~~ll~~v~~--~~lgl~~D~~h~~~-~~~~~~---~~i~~~~~~i~~vHikD~~~~~-~~~~~~G~G~id~~~i~~~L~  242 (283)
T PRK13209        170 ALGYAHYLNS--PWFQLYPDIGNLSA-WDNDVQ---MELQAGIGHIVAFHVKDTKPGV-FKNVPFGEGVVDFERCFKTLK  242 (283)
T ss_pred             HHHHHHHhCC--CccceEeccchHHH-hcCCHH---HHHHhCcCcEEEEEeccCCCCC-CceeCCCCCccCHHHHHHHHH
Confidence            7776666532  3322222   2221 111122   233322   2345554321121 1 1122478999999999999


Q ss_pred             hCCCC
Q 015894          352 GLGVR  356 (398)
Q Consensus       352 ~~Gi~  356 (398)
                      +.|++
T Consensus       243 ~~gy~  247 (283)
T PRK13209        243 QSGYC  247 (283)
T ss_pred             HcCCC
Confidence            87764

>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain

Probab=94.78  E-value=3.9  Score=40.10  Aligned_cols=185  Identities=17%  Similarity=0.201  Sum_probs=96.7

Q ss_pred             HHHHHHHhcC-CCEEEEecCCCCCcc----cC-------------C--CCHHHHHHHHHhc---cCCcEEE-E-eCCHhh
Q 015894          123 ELIKLLVSSG-LAVVEATSFVSPKWV----PQ-------------L--ADAKDVMAAIQNV---EGARFPV-L-TPNLKG  177 (398)
Q Consensus       123 ~ia~~L~~aG-v~~IEvG~~~~~~~~----p~-------------~--~D~~~v~~~i~~~---~~~~l~~-l-~~n~~~  177 (398)
                      +.+..+.+.| +..+++++.......    |.             +  ...+.+++.++..   .+..+.+ + ..+.++
T Consensus        24 ~~~~~~~~~g~~g~v~~~ti~~~~~~~~~~p~~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~p~ivsi~g~~~~~  103 (296)
T cd04740          24 EELSRVADLGKLGAIVTKSITLEPREGNPPPRVVETPGGMLNAIGLQNPGVEAFLEELLPWLREFGTPVIASIAGSTVEE  103 (296)
T ss_pred             HHHHHHHhcCCceEEEECCcCCCCCCCCCCCeEEecCcceeeecCCCCcCHHHHHHHHHHHhhcCCCcEEEEEecCCHHH
Confidence            3455555566 999999864321000    11             0  0124555555422   2333333 2 234444


Q ss_pred             H----HHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecCCCCCCCCHHHHHH
Q 015894          178 F----EAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAREL-SIPVRGYLSCVVGCPVEGMVPPSKVAY  252 (398)
Q Consensus       178 i----e~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~~v~~~l~~~fg~~~~~r~~~~~l~~  252 (398)
                      +    +++.++|+|.|-+-++ |+...  +.+...-...+.+.++++.+|+. ++.|.+-+.     |     +.+...+
T Consensus       104 ~~~~a~~~~~~G~d~iElN~~-cP~~~--~~g~~~~~~~~~~~eiv~~vr~~~~~Pv~vKl~-----~-----~~~~~~~  170 (296)
T cd04740         104 FVEVAEKLADAGADAIELNIS-CPNVK--GGGMAFGTDPEAVAEIVKAVKKATDVPVIVKLT-----P-----NVTDIVE  170 (296)
T ss_pred             HHHHHHHHHHcCCCEEEEECC-CCCCC--CCcccccCCHHHHHHHHHHHHhccCCCEEEEeC-----C-----CchhHHH
Confidence            3    4556689998877443 22111  10111112234556667777776 677664443     1     2346778


Q ss_pred             HHHHHHhCCCCEEEEccCcCcCC------------------H----HHHHHHHHHHHhhCCCCeEEEEeCCccch-HHHH
Q 015894          253 VSKQLYDMGCSEISLGDTIGVGT------------------P----GTVIPMLEAVLDAVPVDKLAVHFHDTYGQ-ALSN  309 (398)
Q Consensus       253 ~a~~l~~~Gad~I~L~DT~G~~~------------------P----~~v~~lv~~l~~~~p~~~l~~H~Hnd~Gl-A~AN  309 (398)
                      +++.+.++|+|.|.+-+|.+...                  +    ....++++.+++.++ ++|-.    +-|. -...
T Consensus       171 ~a~~~~~~G~d~i~~~nt~~g~~~~~~~~~~~~~~~~gg~sg~~~~~~~~~~i~~i~~~~~-ipii~----~GGI~~~~d  245 (296)
T cd04740         171 IARAAEEAGADGLTLINTLKGMAIDIETRKPILGNVTGGLSGPAIKPIALRMVYQVYKAVE-IPIIG----VGGIASGED  245 (296)
T ss_pred             HHHHHHHcCCCEEEEECCCcccccccccCceeecCCcceecCcccchHHHHHHHHHHHhcC-CCEEE----ECCCCCHHH
Confidence            89999999999998876543221                  1    113356667776553 23332    1222 2366


Q ss_pred             HHHHHHhCCCEEeecc
Q 015894          310 ILASLQMGISTVDSSV  325 (398)
Q Consensus       310 alaAl~aGa~~VD~Sv  325 (398)
                      +..++++||+.|..+-
T Consensus       246 a~~~l~~GAd~V~igr  261 (296)
T cd04740         246 ALEFLMAGASAVQVGT  261 (296)
T ss_pred             HHHHHHcCCCEEEEch
Confidence            7777788888776543

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.

>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative

Probab=94.74  E-value=2.3  Score=41.15  Aligned_cols=142  Identities=15%  Similarity=0.104  Sum_probs=74.5

Q ss_pred             HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894          178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL  257 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l  257 (398)
                      ++.|.+.|++.|.+...  +........-..+...+.+++++++|+++|+.+..  ... ..+  ...++....+++   
T Consensus       100 i~~a~~lG~~~v~~~~~--~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~l--E~~-~~~--~~~t~~~~~~li---  169 (279)
T TIGR00542       100 IQLARDLGIRTIQLAGY--DVYYEEHDEETRRRFREGLKEAVELAARAQVTLAV--EIM-DTP--FMSSISKWLKWD---  169 (279)
T ss_pred             HHHHHHhCCCEEEecCc--ccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEE--eeC-CCc--hhcCHHHHHHHH---
Confidence            45667789998876421  11000000111445667778899999999997652  211 111  123444444443   


Q ss_pred             HhCCCCEEEE-ccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCC
Q 015894          258 YDMGCSEISL-GDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKG  336 (398)
Q Consensus       258 ~~~Gad~I~L-~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~g  336 (398)
                      .+.|-+.+.+ -|+.-...-.  .+....++. ..+--.++|++|..+            |.         ...+|+   
T Consensus       170 ~~v~~~~v~~~~D~~h~~~~~--~~~~~~i~~-~~~~i~~vHikD~~~------------~~---------~~~~p~---  222 (279)
T TIGR00542       170 HYLNSPWFTLYPDIGNLSAWD--NDVQMELQL-GIDKIVAIHLKDTKP------------GQ---------FKDVPF---  222 (279)
T ss_pred             HHcCCCceEEEeCcChhhhcc--CCHHHHHHH-hhhhEEEEEeCCCCC------------Cc---------cCCcCC---
Confidence            3445444433 4653221100  012222332 222348899999754            11         011221   


Q ss_pred             CCCCccHHHHHHHHHhCCCC
Q 015894          337 ASGNVATEDVVYMLNGLGVR  356 (398)
Q Consensus       337 raGNa~lE~vv~~L~~~Gi~  356 (398)
                      +.|..+...++.+|++.|++
T Consensus       223 G~G~id~~~~~~aL~~~gy~  242 (279)
T TIGR00542       223 GEGCVDFERCFKTLKQLNYR  242 (279)
T ss_pred             CCCccCHHHHHHHHHHhCCc
Confidence            36789999999999987775

This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.

>COG1082 IolE Sugar phosphate isomerases/epimerases [Carbohydrate transport and metabolism]

Probab=94.74  E-value=2.5  Score=40.22  Aligned_cols=204  Identities=20%  Similarity=0.165  Sum_probs=111.0

Q ss_pred             HHHHHHHhcCCCEEEEecCCCCCcccC-CCCHHHHHHHHHhccCCcEEEEeC--------CHh-----------hHHHHH
Q 015894          123 ELIKLLVSSGLAVVEATSFVSPKWVPQ-LADAKDVMAAIQNVEGARFPVLTP--------NLK-----------GFEAAV  182 (398)
Q Consensus       123 ~ia~~L~~aGv~~IEvG~~~~~~~~p~-~~D~~~v~~~i~~~~~~~l~~l~~--------n~~-----------~ie~a~  182 (398)
                      ++++...++|++.||++...   ..++ ..+.+++.+.++. -+.++..+.+        +..           -++.|.
T Consensus        19 ~~l~~~~~~G~~gvEi~~~~---~~~~~~~~~~~l~~~l~~-~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~   94 (274)
T COG1082          19 EILRKAAELGFDGVELSPGD---LFPADYKELAELKELLAD-YGLEITSLAPFSNNLLSPDEEEREEALEELKRAIELAK   94 (274)
T ss_pred             HHHHHHHHhCCCeEecCCcc---cCCchhhhHHHHHHHHHH-cCcEEEeecccCCCcCCCchhhHHHHHHHHHHHHHHHH
Confidence            46667778889999998511   1111 0124455544442 2444444321        111           245677


Q ss_pred             HcCCCEEEEeccCchHHHhh-hcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCC
Q 015894          183 AAGAKEVAIFASASESFSKS-NINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMG  261 (398)
Q Consensus       183 ~~Gv~~v~i~~~~Sd~~~~~-~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~G  261 (398)
                      +.|++.+.++.+........ ......+...+.+.++.+.|++.|+.+.......   +.....+..   +..+.+.+.+
T Consensus        95 ~lg~~~vv~~~g~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~i~l~~e~~~~---~~~~~~~~~---~~~~~~~~~~  168 (274)
T COG1082          95 ELGAKVVVVHPGLGAGADDPDSPEEARERWAEALEELAEIAEELGIGLALENHHH---PGNVVETGA---DALDLLREVD  168 (274)
T ss_pred             HcCCCeEEeecccCCcCCCCCCCcccHHHHHHHHHHHHHHHHHhCCceEEeecCC---ccceeecCH---HHHHHHHhcC
Confidence            78999888766543322110 1122345678888889999999887765221000   111111122   2333444444


Q ss_pred             CC-EEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCC
Q 015894          262 CS-EISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGN  340 (398)
Q Consensus       262 ad-~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGN  340 (398)
                      -+ .-.+-|+.=...-..  +.+..+++..+- -.++|+||..+-...           .+...    |. ...+| -|.
T Consensus       169 ~~~v~~~lD~~H~~~~~~--d~~~~~~~~~~r-I~hvH~kD~~~~~~~-----------~~~~~----~~-~~~pG-~G~  228 (274)
T COG1082         169 SPNVGLLLDTGHAFFAGE--DPLEAIRKLGDR-IGHVHLKDADGPTLD-----------IVNFL----GQ-HLPPG-DGD  228 (274)
T ss_pred             CCceEEEEecCchhhccC--CHHHHHHHhhcc-eeEEEEeecCcchhc-----------ccCCC----cc-eeCCC-CCC
Confidence            33 335556543333322  456666665553 489999999987655           11111    32 22233 689


Q ss_pred             ccHHHHHHHHHhCCCC
Q 015894          341 VATEDVVYMLNGLGVR  356 (398)
Q Consensus       341 a~lE~vv~~L~~~Gi~  356 (398)
                      .+...+...|++.|++
T Consensus       229 id~~~i~~~L~~~gy~  244 (274)
T COG1082         229 IDFKAIFSALREAGYD  244 (274)
T ss_pred             cCHHHHHHHHHHcCCC
Confidence            9999999999988775

>PRK09234 fbiC FO synthase; Reviewed

Probab=94.70  E-value=4.3  Score=46.04  Aligned_cols=226  Identities=11%  Similarity=0.034  Sum_probs=133.3

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCc--------ccCC---CCHHHHHHHHHhcc---CCc--EEEEeCCHh
Q 015894          113 KNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKW--------VPQL---ADAKDVMAAIQNVE---GAR--FPVLTPNLK  176 (398)
Q Consensus       113 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~--------~p~~---~D~~~v~~~i~~~~---~~~--l~~l~~n~~  176 (398)
                      ...++.++.+++++...+.|+..+-+.+...|..        ...+   .+.+.+.+.++.+.   +..  +..-..+..
T Consensus        99 ~~~ls~eEIl~~a~~~~~~G~~e~l~t~G~~P~~~~~~~~~~l~~~gy~~~~ey~~~~~~~ik~~~gl~p~i~~G~ls~~  178 (843)
T PRK09234         99 AAYLSPDEVLDIARAGAAAGCKEALFTLGDRPEDRWPEAREWLDERGYDSTLDYVRAMAIRVLEETGLLPHLNPGVMSWS  178 (843)
T ss_pred             cccCCHHHHHHHHHHHHHCCCCEEEEecCCCCccccccccccccccccccHHHHHHHHHHHHHHhcCCCceeeeCCCCHH
Confidence            4578999999999999999999988877655532        1100   12344444454332   111  111123567


Q ss_pred             hHHHHHHcCCCEEEEeccC-chHH-Hhhh------cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHH
Q 015894          177 GFEAAVAAGAKEVAIFASA-SESF-SKSN------INCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPS  248 (398)
Q Consensus       177 ~ie~a~~~Gv~~v~i~~~~-Sd~~-~~~~------~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~  248 (398)
                      +++...+.|++ ..+..-. ++.+ .+..      -+++.+   ++ .++++.|+++|+++...++  +|- .+   +.+
T Consensus       179 E~~~Lk~~g~s-~gl~lEt~~~~l~~~~g~~h~~~P~K~~~---~R-L~ti~~A~~lGi~~tsG~L--~Gi-GE---t~e  247 (843)
T PRK09234        179 ELARLKPVAPS-MGMMLETTSRRLFEEKGGPHYGSPDKDPA---VR-LRVLEDAGRLSVPFTTGIL--IGI-GE---TLA  247 (843)
T ss_pred             HHHHHHHhcCc-CCCCHHHHHHHHHHhhcccccCCCCCCHH---HH-HHHHHHHHHcCCCccceEE--EEC-CC---CHH
Confidence            78888888876 3332222 3322 1111      122333   24 4789999999999887777  442 12   345


Q ss_pred             HHHHHHHHHHhC-----CCCEEEE------ccCc----CcCCHHHHHHHHHHHHhhCCCCeEEEEeC-CccchHHHHHHH
Q 015894          249 KVAYVSKQLYDM-----GCSEISL------GDTI----GVGTPGTVIPMLEAVLDAVPVDKLAVHFH-DTYGQALSNILA  312 (398)
Q Consensus       249 ~l~~~a~~l~~~-----Gad~I~L------~DT~----G~~~P~~v~~lv~~l~~~~p~~~l~~H~H-nd~GlA~ANala  312 (398)
                      +.++.+..+.++     |++.|.+      .+|-    ...+|.+...+++..|-.+|.. +.+-.- |..|..  .+..
T Consensus       248 dRve~L~~LR~Lq~~~g~~~evi~~~F~p~~gT~l~~~~~~s~~e~Lr~iAvaRliL~~~-~~Iqa~~~l~g~~--~~~~  324 (843)
T PRK09234        248 ERAESLFAIRKLHREYGHIQEVIVQNFRAKPDTAMAGVPDAGLEELLATIAVARLVLGPK-MRIQAPPNLVSGD--ECAA  324 (843)
T ss_pred             HHHHHHHHHHHhhHhhCCCcEEeecccccCCCCCCCCCCCCCHHHHHHHHHHHHHhCCCC-ceeeCccccCCHH--HHHH
Confidence            555555555544     5665432      2452    3477888999998888877642 333222 445544  4557


Q ss_pred             HHHhCCCEEeecc--ccCCCCCCCCCCCCCccHHHHHHHHHhCCCC
Q 015894          313 SLQMGISTVDSSV--SGLGGCPYAKGASGNVATEDVVYMLNGLGVR  356 (398)
Q Consensus       313 Al~aGa~~VD~Sv--~GlGecp~a~graGNa~lE~vv~~L~~~Gi~  356 (398)
                      ++.+||+=+.++.  .+--.   +|.+. .++++++....+..|+.
T Consensus       325 ~L~~GanD~GG~~~~~~d~~---~p~~~-~~~~~~l~~~~~~aG~~  366 (843)
T PRK09234        325 LLGAGIDDWGGVSPLTPDHV---NPERP-WPQLDELAAVTAEAGFT  366 (843)
T ss_pred             HHhcCCCcccchhhhHhhcc---CccCC-CCCHHHHHHHHHHcCCC
Confidence            8999999888883  32100   00122 35789999999876653

>PRK08227 autoinducer 2 aldolase; Validated

Probab=94.68  E-value=1.9  Score=42.20  Aligned_cols=123  Identities=21%  Similarity=0.196  Sum_probs=81.5

Q ss_pred             hHHHHHHcCCCEEEE--eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHH
Q 015894          177 GFEAAVAAGAKEVAI--FASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVS  254 (398)
Q Consensus       177 ~ie~a~~~Gv~~v~i--~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a  254 (398)
                      ++|.|++.|+|-|.+  +.. |+.         ..+.++++.++++.|.++|+++-+ + +.-|...  ..+++.+...+
T Consensus        99 sVeeAvrlGAdAV~~~v~~G-s~~---------E~~~l~~l~~v~~ea~~~G~Plla-~-~prG~~~--~~~~~~ia~aa  164 (264)
T PRK08227         99 DMEDAVRLNACAVAAQVFIG-SEY---------EHQSIKNIIQLVDAGLRYGMPVMA-V-TAVGKDM--VRDARYFSLAT  164 (264)
T ss_pred             cHHHHHHCCCCEEEEEEecC-CHH---------HHHHHHHHHHHHHHHHHhCCcEEE-E-ecCCCCc--CchHHHHHHHH
Confidence            588999999996655  433 332         246889999999999999999865 2 2222211  13566788889


Q ss_pred             HHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCC--ccchHHHHHHHHHHhCCCEEee
Q 015894          255 KQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHD--TYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       255 ~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hn--d~GlA~ANalaAl~aGa~~VD~  323 (398)
                      +...++|||.|-..=|     .+.+.+.+    +..|. |+-+=+=-  +.--.+..+-.|+++|+..|..
T Consensus       165 RiaaELGADiVK~~y~-----~~~f~~vv----~a~~v-PVviaGG~k~~~~~~L~~v~~ai~aGa~Gv~~  225 (264)
T PRK08227        165 RIAAEMGAQIIKTYYV-----EEGFERIT----AGCPV-PIVIAGGKKLPERDALEMCYQAIDEGASGVDM  225 (264)
T ss_pred             HHHHHHcCCEEecCCC-----HHHHHHHH----HcCCC-cEEEeCCCCCCHHHHHHHHHHHHHcCCceeee
Confidence            9999999999876543     13344444    44442 44442211  2233688888999999987753

>PRK12858 tagatose 1,6-diphosphate aldolase; Reviewed

Probab=94.65  E-value=1.8  Score=43.87  Aligned_cols=136  Identities=14%  Similarity=0.078  Sum_probs=86.0

Q ss_pred             hHHHHHHcCCCEEEEe--ccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEE-eeeecCCCCCC-----CCHH
Q 015894          177 GFEAAVAAGAKEVAIF--ASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYL-SCVVGCPVEGM-----VPPS  248 (398)
Q Consensus       177 ~ie~a~~~Gv~~v~i~--~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l-~~~fg~~~~~r-----~~~~  248 (398)
                      .++.+++.|+|-|-+.  ....+.. +     -.++.++.+.++.+.|++.|+++...+ ++..+..+...     ..|+
T Consensus       111 sve~a~~~GAdAVk~lv~~~~d~~~-~-----~~~~~~~~l~rv~~ec~~~giPlllE~l~y~~~~~~~~~~~~a~~~p~  184 (340)
T PRK12858        111 SVRRIKEAGADAVKLLLYYRPDEDD-A-----INDRKHAFVERVGAECRANDIPFFLEPLTYDGKGSDKKAEEFAKVKPE  184 (340)
T ss_pred             cHHHHHHcCCCEEEEEEEeCCCcch-H-----HHHHHHHHHHHHHHHHHHcCCceEEEEeccCCCccccccccccccCHH
Confidence            3788999999976554  3322110 0     023567788999999999999986542 43332222111     5688


Q ss_pred             HHHHHHHHHHh--CCCCEEEEccCc------Cc------CCHHHHHHHHHHHHhhCCCCeEEE-EeCCccchHHHHHHHH
Q 015894          249 KVAYVSKQLYD--MGCSEISLGDTI------GV------GTPGTVIPMLEAVLDAVPVDKLAV-HFHDTYGQALSNILAS  313 (398)
Q Consensus       249 ~l~~~a~~l~~--~Gad~I~L~DT~------G~------~~P~~v~~lv~~l~~~~p~~~l~~-H~Hnd~GlA~ANalaA  313 (398)
                      .+...++.+.+  +|+|.+-+.=+.      |.      .+-.+..+.++.+.+..|. |+-+ =.--+...-+...-.|
T Consensus       185 ~V~~a~r~~~~~elGaDvlKve~p~~~~~veg~~~~~~~~~~~~~~~~f~~~~~a~~~-P~vvlsgG~~~~~f~~~l~~A  263 (340)
T PRK12858        185 KVIKTMEEFSKPRYGVDVLKVEVPVDMKFVEGFDGFEEAYTQEEAFKLFREQSDATDL-PFIFLSAGVSPELFRRTLEFA  263 (340)
T ss_pred             HHHHHHHHHhhhccCCeEEEeeCCCCcccccccccccccccHHHHHHHHHHHHhhCCC-CEEEECCCCCHHHHHHHHHHH
Confidence            99999999995  999987764331      11      1344455666666655543 3333 3334556677888889


Q ss_pred             HHhCCC
Q 015894          314 LQMGIS  319 (398)
Q Consensus       314 l~aGa~  319 (398)
                      +++|+.
T Consensus       264 ~~aGa~  269 (340)
T PRK12858        264 CEAGAD  269 (340)
T ss_pred             HHcCCC
Confidence            999993

>PRK11320 prpB 2-methylisocitrate lyase; Provisional

Probab=94.61  E-value=1.3  Score=43.91  Aligned_cols=206  Identities=15%  Similarity=0.129  Sum_probs=120.2

Q ss_pred             HHHHHhcCCCEEEEecC-C--CCCcccC--CCCHHHHHHHHHhccC-CcEEEEeC------CH----hhHHHHHHcCCCE
Q 015894          125 IKLLVSSGLAVVEATSF-V--SPKWVPQ--LADAKDVMAAIQNVEG-ARFPVLTP------NL----KGFEAAVAAGAKE  188 (398)
Q Consensus       125 a~~L~~aGv~~IEvG~~-~--~~~~~p~--~~D~~~v~~~i~~~~~-~~l~~l~~------n~----~~ie~a~~~Gv~~  188 (398)
                      ++...++|++.|=++++ +  +....|.  +-+.++++..++++.+ +.+.+++-      +.    +-+++..++|+.-
T Consensus        30 Ari~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~~~iPviaD~d~GyG~~~~v~r~V~~~~~aGaag  109 (292)
T PRK11320         30 ALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDACDLPLLVDIDTGFGGAFNIARTVKSMIKAGAAA  109 (292)
T ss_pred             HHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhccCCCEEEECCCCCCCHHHHHHHHHHHHHcCCeE
Confidence            46678889999988653 1  1222342  2356777777776543 33444442      22    3467788899999


Q ss_pred             EEEeccCchHHHhh---hcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC-CCCCHHHHHHHHHHHHhCCCCE
Q 015894          189 VAIFASASESFSKS---NINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE-GMVPPSKVAYVSKQLYDMGCSE  264 (398)
Q Consensus       189 v~i~~~~Sd~~~~~---~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~-~r~~~~~l~~~a~~l~~~Gad~  264 (398)
                      |+|-+.+.+-..-+   +-=.+.++..++++.+++..+  +..+.  |..=.   |+ .....++..+=++...++|||.
T Consensus       110 i~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~--~~d~~--IiART---Da~~~~g~deAI~Ra~aY~eAGAD~  182 (292)
T PRK11320        110 VHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDART--DPDFV--IMART---DALAVEGLDAAIERAQAYVEAGADM  182 (292)
T ss_pred             EEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhcc--CCCeE--EEEec---CcccccCHHHHHHHHHHHHHcCCCE
Confidence            99988765421111   111367888888866555433  33322  11100   11 1224566667788888999999


Q ss_pred             EEEccCcCcCCHHHHHHHHHHHHhhCCCCeEE--EEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCcc
Q 015894          265 ISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLA--VHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVA  342 (398)
Q Consensus       265 I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~--~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~  342 (398)
                      |.+.   |.-++++++.+.+.+.  .|   +-  +-.....++=  +.-.--++|+++|-.....+        ++-..+
T Consensus       183 ifi~---~~~~~~~i~~~~~~~~--~P---l~~n~~~~~~~p~~--s~~~L~~lGv~~v~~~~~~~--------~aa~~a  244 (292)
T PRK11320        183 IFPE---AMTELEMYRRFADAVK--VP---ILANITEFGATPLF--TTEELASAGVAMVLYPLSAF--------RAMNKA  244 (292)
T ss_pred             EEec---CCCCHHHHHHHHHhcC--CC---EEEEeccCCCCCCC--CHHHHHHcCCcEEEEChHHH--------HHHHHH
Confidence            9985   4667888887777652  23   42  2211111111  12233467999987766655        455667


Q ss_pred             HHHHHHHHHhCCC
Q 015894          343 TEDVVYMLNGLGV  355 (398)
Q Consensus       343 lE~vv~~L~~~Gi  355 (398)
                      +++++..+++.|.
T Consensus       245 ~~~~~~~l~~~g~  257 (292)
T PRK11320        245 AENVYEAIRRDGT  257 (292)
T ss_pred             HHHHHHHHHHcCC
Confidence            7777777776554

>PRK05835 fructose-bisphosphate aldolase; Provisional

Probab=94.49  E-value=0.58  Score=46.80  Aligned_cols=119  Identities=16%  Similarity=0.189  Sum_probs=86.3

Q ss_pred             HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEccCc-CcCCHHHHHHHHHHHHhhCCC
Q 015894          215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGDTI-GVGTPGTVIPMLEAVLDAVPV  292 (398)
Q Consensus       215 ~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~DT~-G~~~P~~v~~lv~~l~~~~p~  292 (398)
                      ++++.+.|++.|+-|- .+.         -++.+.+..+++.+.+.+... |.+.... ..+.+..+..++..+.+..+.
T Consensus         5 ~k~lL~~A~~~~yaV~-AfN---------~~n~e~~~avi~AAe~~~sPvIlq~s~~~~~~~g~~~~~~~~~~~a~~~~~   74 (307)
T PRK05835          5 GNEILLKAHKEGYGVG-AFN---------FVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPH   74 (307)
T ss_pred             HHHHHHHHHHCCceEE-EEE---------ECCHHHHHHHHHHHHHHCCCEEEEcCccHHhhCChHHHHHHHHHHHHhcCC
Confidence            5677888999998764 233         146789999999999999875 4443322 234456677788877777764


Q ss_pred             CeEEEEeCCccchHHHHHHHHHHhCCC--EEeeccccCCCCCCCCCCCCCc-cHHHHHHHHHhCC
Q 015894          293 DKLAVHFHDTYGQALSNILASLQMGIS--TVDSSVSGLGGCPYAKGASGNV-ATEDVVYMLNGLG  354 (398)
Q Consensus       293 ~~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGecp~a~graGNa-~lE~vv~~L~~~G  354 (398)
                      +|+.+|.  |.|.-...+..|+++|.+  ++|+|-..+-+         |. -|-+++.+.+..|
T Consensus        75 VPValHL--DHg~~~e~i~~ai~~GftSVM~DgS~l~~ee---------Ni~~T~~vve~Ah~~g  128 (307)
T PRK05835         75 IPVALHL--DHGTTFESCEKAVKAGFTSVMIDASHHAFEE---------NLELTSKVVKMAHNAG  128 (307)
T ss_pred             CeEEEEC--CCCCCHHHHHHHHHcCCCEEEEeCCCCCHHH---------HHHHHHHHHHHHHHcC
Confidence            5777654  777788999999999998  67999888877         65 5677777776443

>PRK12677 xylose isomerase; Provisional

Probab=94.48  E-value=2.2  Score=43.90  Aligned_cols=113  Identities=19%  Similarity=0.172  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHhcCCCEEEEecCCC-CCcccCCCC---HHHHHHHHHhccCCcEEEEeCC---------------------
Q 015894          120 VKVELIKLLVSSGLAVVEATSFVS-PKWVPQLAD---AKDVMAAIQNVEGARFPVLTPN---------------------  174 (398)
Q Consensus       120 ~k~~ia~~L~~aGv~~IEvG~~~~-~~~~p~~~D---~~~v~~~i~~~~~~~l~~l~~n---------------------  174 (398)
                      .-.++++.+.++|++.||+..... |-..+....   .+++.+.++ -.++++.++++|                     
T Consensus        32 ~~~E~v~~~a~~Gf~gVElh~~~l~p~~~~~~~~~~~~~~lk~~l~-~~GL~v~~v~~n~f~~p~~~~g~lts~d~~~R~  110 (384)
T PRK12677         32 DPVEAVHKLAELGAYGVTFHDDDLVPFGATDAERDRIIKRFKKALD-ETGLVVPMVTTNLFTHPVFKDGAFTSNDRDVRR  110 (384)
T ss_pred             CHHHHHHHHHHhCCCEEEecccccCCCCCChhhhHHHHHHHHHHHH-HcCCeeEEEecCCCCCccccCCcCCCCCHHHHH
Confidence            345778888899999999864211 100010000   122222222 134555544321                     


Q ss_pred             ------HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHH----HHHHHHHHHhCCCcEEEEEee
Q 015894          175 ------LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIR----YRDVALAARELSIPVRGYLSC  235 (398)
Q Consensus       175 ------~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~----~~~~v~~ak~~G~~v~~~l~~  235 (398)
                            .+.++.|.+.|++.|.++..--..  ......+.++++++    +..+.++|+++|..|+..|..
T Consensus       111 ~Ai~~~~r~IdlA~eLGa~~Vvv~~G~~g~--~~~~~~d~~~a~~~~~eaL~~l~~~A~~~G~gV~laIEp  179 (384)
T PRK12677        111 YALRKVLRNIDLAAELGAKTYVMWGGREGA--EYDAAKDVRAALDRYREAIDLLAAYVKDQGYDLRFALEP  179 (384)
T ss_pred             HHHHHHHHHHHHHHHhCCCEEEEeeCCCCc--cCcccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEcc
Confidence                  112467788999999887552100  00112344455544    457778888877555544553

>PRK09196 fructose-1,6-bisphosphate aldolase; Reviewed

Probab=94.44  E-value=0.65  Score=47.19  Aligned_cols=120  Identities=18%  Similarity=0.196  Sum_probs=85.1

Q ss_pred             HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEccCcC-cCCHHHHHHHHHHHHhhCCC
Q 015894          215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGDTIG-VGTPGTVIPMLEAVLDAVPV  292 (398)
Q Consensus       215 ~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~DT~G-~~~P~~v~~lv~~l~~~~p~  292 (398)
                      ++++.+.|++.++-|-+ +.         -++.+.+..+++.+.+.+... |.+..... .+....+..++..+.+..+.
T Consensus         6 ~k~lL~~A~~~~yAVgA-fN---------~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~g~~~~~~~~~~~a~~~~~   75 (347)
T PRK09196          6 LRQLLDHAAEHGYGVPA-FN---------VNNLEQVQAIMEAADETDSPVILQASAGARKYAGEPFLRHLILAAVEEYPH   75 (347)
T ss_pred             HHHHHHHHHHcCceEEE-ee---------eCCHHHHHHHHHHHHHhCCCEEEECCccHhhhCCHHHHHHHHHHHHHhCCC
Confidence            56778889999997752 22         146789999999999999874 55554433 33345678888888877765


Q ss_pred             CeEEEEeCCccchHHHHHHHHHHhCCC--EEeeccc-------cCCCCCCCCCCCCCc-cHHHHHHHHHhCCC
Q 015894          293 DKLAVHFHDTYGQALSNILASLQMGIS--TVDSSVS-------GLGGCPYAKGASGNV-ATEDVVYMLNGLGV  355 (398)
Q Consensus       293 ~~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~-------GlGecp~a~graGNa-~lE~vv~~L~~~Gi  355 (398)
                      +|+.+|.  |.|.....+..|+++|.+  ++|+|-.       .+-+         |. -|.+++.+.+..|+
T Consensus        76 VPValHL--DHg~~~e~i~~ai~~GftSVMiDgS~l~~~~~~~p~eE---------NI~~Tkevve~Ah~~Gv  137 (347)
T PRK09196         76 IPVVMHQ--DHGNSPATCQRAIQLGFTSVMMDGSLKADGKTPASYEY---------NVDVTRKVVEMAHACGV  137 (347)
T ss_pred             CcEEEEC--CCCCCHHHHHHHHHcCCCEEEecCCCCcccCCCCCHHH---------HHHHHHHHHHHHHHcCC
Confidence            5777655  666778889999999998  6799987       4544         44 56667766664433

>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]

Probab=94.44  E-value=0.55  Score=44.53  Aligned_cols=168  Identities=17%  Similarity=0.147  Sum_probs=107.7

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEEEeC--C--HhhHHHHHHcCCCEE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPVLTP--N--LKGFEAAVAAGAKEV  189 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~--n--~~~ie~a~~~Gv~~v  189 (398)
                      ..+.++-+++++...+. ++.||+|.|.-...      --...+.+| ..|+..+.+=.-  .  .-..+.+.++|+|.+
T Consensus        12 ~~~l~~Ai~~a~~v~~~-~diiEvGTpLik~e------G~~aV~~lr~~~pd~~IvAD~Kt~D~G~~e~~ma~~aGAd~~   84 (217)
T COG0269          12 LLDLEEAIEIAEEVADY-VDIIEVGTPLIKAE------GMRAVRALRELFPDKIIVADLKTADAGAIEARMAFEAGADWV   84 (217)
T ss_pred             ccCHHHHHHHHHHhhhc-ceEEEeCcHHHHHh------hHHHHHHHHHHCCCCeEEeeeeecchhHHHHHHHHHcCCCEE
Confidence            46778889999999999 99999997642110      112344555 346655444221  1  234678999999999


Q ss_pred             EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc-
Q 015894          190 AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG-  268 (398)
Q Consensus       190 ~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~-  268 (398)
                      .+...+.+               +.+...++.|++.|..+.+.++..        .+++   +.++.+.++|++.+.+= 
T Consensus        85 tV~g~A~~---------------~TI~~~i~~A~~~~~~v~iDl~~~--------~~~~---~~~~~l~~~gvd~~~~H~  138 (217)
T COG0269          85 TVLGAADD---------------ATIKKAIKVAKEYGKEVQIDLIGV--------WDPE---QRAKWLKELGVDQVILHR  138 (217)
T ss_pred             EEEecCCH---------------HHHHHHHHHHHHcCCeEEEEeecC--------CCHH---HHHHHHHHhCCCEEEEEe
Confidence            98766443               556778999999999988766532        2343   34556666999987652 


Q ss_pred             ----cCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894          269 ----DTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       269 ----DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                          -+.|.--+++.-+.++.+.+  ++..+.+    +-|+-.-+.-.....|+++|
T Consensus       139 g~D~q~~G~~~~~~~l~~ik~~~~--~g~~vAV----aGGI~~~~i~~~~~~~~~iv  189 (217)
T COG0269         139 GRDAQAAGKSWGEDDLEKIKKLSD--LGAKVAV----AGGITPEDIPLFKGIGADIV  189 (217)
T ss_pred             cccHhhcCCCccHHHHHHHHHhhc--cCceEEE----ecCCCHHHHHHHhcCCCCEE
Confidence                23355444444444444433  1234554    45888888888888997755

>TIGR01290 nifB nitrogenase cofactor biosynthesis protein NifB

Probab=94.42  E-value=7.7  Score=40.76  Aligned_cols=169  Identities=15%  Similarity=0.146  Sum_probs=98.5

Q ss_pred             CCCHHHHHHHHHHHHhc--CCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEEEeCC---HhhHHHHHHcCCCE
Q 015894          115 IVPAVVKVELIKLLVSS--GLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPVLTPN---LKGFEAAVAAGAKE  188 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~a--Gv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~n---~~~ie~a~~~Gv~~  188 (398)
                      .++.++.++.+..+.+.  ++..|=+..+..|-.-|  ...-+.+..++ ..++.++..-+-.   .+.++..++.|++.
T Consensus        59 ~Ltpee~~~~i~~v~~~~~~~~~V~iaG~GEPLl~~--e~~~~~l~~~~~~~~~i~i~lsTNG~~l~e~i~~L~~~gvd~  136 (442)
T TIGR01290        59 LLTPEQALRKARQVAAEIPQLSVVGIAGPGDPLANI--GKTFQTLELVARQLPDVKLCLSTNGLMLPEHVDRLVDLGVGH  136 (442)
T ss_pred             cCCHHHHHHHHHHHHHhcCCCCEEEEecCCCcccCc--cccHHHHHHHHHhcCCCeEEEECCCCCCHHHHHHHHHCCCCe
Confidence            58899999988877654  46665554333331111  11123344444 3467665444321   35678888999999


Q ss_pred             EEEeccCch--HHHhh-------h---cCCCHHHH-HHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 015894          189 VAIFASASE--SFSKS-------N---INCTIEDS-LIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSK  255 (398)
Q Consensus       189 v~i~~~~Sd--~~~~~-------~---~~~s~~~~-l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~  255 (398)
                      |.+.+...+  .|.+.       +   .+.+.... +++..+.++.+++.|+.|.++....   |  + .+.+.+.++++
T Consensus       137 V~islka~d~e~~~~Iy~~v~~~g~~~tG~~~~~il~e~~l~~l~~l~~~G~~v~v~~vlI---p--G-iND~~i~~l~~  210 (442)
T TIGR01290       137 VTITINAIDPAVGEKIYPWVWYEGERYTGREAADLLIERQLEGLEKLTERGILVKVNSVLI---P--G-INDEHLVEVSK  210 (442)
T ss_pred             EEEeccCCCHHHHhhcchhhccccccccCcchHHHHHHHHHHHHHHHHhCCCeEEEEEEee---C--C-cCHHHHHHHHH
Confidence            988766544  33221       0   12222232 5666777888889999876544432   2  2 34478889999


Q ss_pred             HHHhCCCCEEEE------c--cCc------CcCCHHHHHHHHHHHHhhCC
Q 015894          256 QLYDMGCSEISL------G--DTI------GVGTPGTVIPMLEAVLDAVP  291 (398)
Q Consensus       256 ~l~~~Gad~I~L------~--DT~------G~~~P~~v~~lv~~l~~~~p  291 (398)
                      .+.+.|++.+.|      +  ++.      -..++.++..+-+.+...+|
T Consensus       211 ~~~~lg~~~~nl~p~~~~p~~G~~~~~~~~~~ps~e~l~~~~~~~~~~~~  260 (442)
T TIGR01290       211 QVKELGAFLHNVMPLISAPEHGTVYGLNGQREPDPDELAALRDRLEMGTP  260 (442)
T ss_pred             HHHhCCCcEEEeecCCCccccCCccCcCCCCCcCHHHHHHHHHHHHhhhh
Confidence            999999986665      2  111      12345566666665555444

This model describes NifB, a protein required for the biosynthesis of the iron-molybdenum (or iron-vanadium) cofactor used by the nitrogen-fixing enzyme nitrogenase. Archaeal homologs lack the most C-terminal region and score between the trusted and noise cutoffs of this model.

>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional

Probab=94.42  E-value=5  Score=38.54  Aligned_cols=204  Identities=16%  Similarity=0.113  Sum_probs=108.7

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEecCCCC-CcccCCCCHHHHHHHHHhccCCcEEEE--eCCHhhHHHHHHcCCCEEEEecc
Q 015894          118 AVVKVELIKLLVSSGLAVVEATSFVSP-KWVPQLADAKDVMAAIQNVEGARFPVL--TPNLKGFEAAVAAGAKEVAIFAS  194 (398)
Q Consensus       118 ~~~k~~ia~~L~~aGv~~IEvG~~~~~-~~~p~~~D~~~v~~~i~~~~~~~l~~l--~~n~~~ie~a~~~Gv~~v~i~~~  194 (398)
                      ..+-.++++.+.+.|++.|=+.-.... ...   ....++++.+.+..++++.+-  +++.++++.+++.|++.|.+-..
T Consensus        29 ~~d~~~~a~~~~~~G~~~i~i~dl~~~~~~~---~~~~~~i~~i~~~~~ipv~~~GGi~s~~~~~~~l~~Ga~~Viigt~  105 (253)
T PRK02083         29 AGDPVELAKRYNEEGADELVFLDITASSEGR---DTMLDVVERVAEQVFIPLTVGGGIRSVEDARRLLRAGADKVSINSA  105 (253)
T ss_pred             cCCHHHHHHHHHHcCCCEEEEEeCCcccccC---cchHHHHHHHHHhCCCCEEeeCCCCCHHHHHHHHHcCCCEEEEChh
Confidence            345678999999999988777543221 111   112334444443334444443  36889999999999999866322


Q ss_pred             CchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEee-----------eecCCCCCCCCHHHHHHHHHHHHhCCC
Q 015894          195 ASESFSKSNINCTIEDSLIRYRDVALAARELSI-PVRGYLSC-----------VVGCPVEGMVPPSKVAYVSKQLYDMGC  262 (398)
Q Consensus       195 ~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~-~v~~~l~~-----------~fg~~~~~r~~~~~l~~~a~~l~~~Ga  262 (398)
                         .+          +..+.+.+   .++..|- .+.+.+-+           ....+.  ..+.....++++++.+.|+
T Consensus       106 ---~l----------~~p~~~~e---i~~~~g~~~iv~slD~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~~~~g~  167 (253)
T PRK02083        106 ---AV----------ANPELISE---AADRFGSQCIVVAIDAKRDPEPGRWEVYTHGGR--KPTGLDAVEWAKEVEELGA  167 (253)
T ss_pred             ---Hh----------hCcHHHHH---HHHHcCCCCEEEEEEeccCCCCCCEEEEEcCCc--eecCCCHHHHHHHHHHcCC
Confidence               11          01122222   2333331 22222210           000000  0112245567788889999


Q ss_pred             CEEEEcc--CcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHH-hCCC-EEeeccccCCCCCCCCCCC
Q 015894          263 SEISLGD--TIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQ-MGIS-TVDSSVSGLGGCPYAKGAS  338 (398)
Q Consensus       263 d~I~L~D--T~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~-aGa~-~VD~Sv~GlGecp~a~gra  338 (398)
                      +.|.+-|  ..|.+.-.. .++++.+++..+ .|+-.-+.-.-   ..-...+++ .||+ .+-++..          -.
T Consensus       168 ~~ii~~~i~~~g~~~g~d-~~~i~~~~~~~~-ipvia~GGv~s---~~d~~~~~~~~G~~gvivg~al----------~~  232 (253)
T PRK02083        168 GEILLTSMDRDGTKNGYD-LELTRAVSDAVN-VPVIASGGAGN---LEHFVEAFTEGGADAALAASIF----------HF  232 (253)
T ss_pred             CEEEEcCCcCCCCCCCcC-HHHHHHHHhhCC-CCEEEECCCCC---HHHHHHHHHhCCccEEeEhHHH----------Hc
Confidence            9998833  444433222 456777776654 35555442211   122224454 4775 3333333          35


Q ss_pred             CCccHHHHHHHHHhCCCCC
Q 015894          339 GNVATEDVVYMLNGLGVRT  357 (398)
Q Consensus       339 GNa~lE~vv~~L~~~Gi~t  357 (398)
                      |..+++++...|++.|+..
T Consensus       233 ~~~~~~~~~~~~~~~~~~~  251 (253)
T PRK02083        233 GEITIGELKAYLAEQGIPV  251 (253)
T ss_pred             CCCCHHHHHHHHHHCCCcc
Confidence            6788999999998888754

>PRK07709 fructose-bisphosphate aldolase; Provisional

Probab=94.41  E-value=0.82  Score=45.27  Aligned_cols=104  Identities=13%  Similarity=0.140  Sum_probs=74.2

Q ss_pred             HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEccC-cCc-CCHHHHHHHHHHHHhhCC
Q 015894          215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGDT-IGV-GTPGTVIPMLEAVLDAVP  291 (398)
Q Consensus       215 ~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~DT-~G~-~~P~~v~~lv~~l~~~~p  291 (398)
                      ++++.+.|++.++-|-+ +.+         ++.+.+..+++.+.+.+... |.+... ... +....+..+++.+.++..
T Consensus         6 ~~~lL~~A~~~~yAV~A-fN~---------~n~e~~~avi~AAe~~~sPvIiq~~~~~~~~~~~~~~~~~~~~~~a~~~~   75 (285)
T PRK07709          6 MKEMLNKALEGKYAVGQ-FNM---------NNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMN   75 (285)
T ss_pred             HHHHHHHHHHCCceEEE-EEE---------CCHHHHHHHHHHHHHHCCCEEEEcCcchhhhcCCHHHHHHHHHHHHHHcC
Confidence            56778889999997742 321         46789999999999998874 555442 233 234567778888877764


Q ss_pred             -CCeEEEEeCCccchHHHHHHHHHHhCCC--EEeeccccCCC
Q 015894          292 -VDKLAVHFHDTYGQALSNILASLQMGIS--TVDSSVSGLGG  330 (398)
Q Consensus       292 -~~~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGe  330 (398)
                       .+|+.+|  =|.|.-+..+..|+++|.+  ++|+|-..+-+
T Consensus        76 ~~VPV~lH--LDHg~~~e~i~~ai~~GftSVM~DgS~lp~ee  115 (285)
T PRK07709         76 ITVPVAIH--LDHGSSFEKCKEAIDAGFTSVMIDASHHPFEE  115 (285)
T ss_pred             CCCcEEEE--CCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHH
Confidence             3566655  5777788999999999998  66988765543

>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase

Probab=94.30  E-value=1.6  Score=46.40  Aligned_cols=156  Identities=13%  Similarity=0.089  Sum_probs=93.9

Q ss_pred             CCHHHHHHHHHHH-HhcCCCEEEEec--C-CCCCcccCCCCHHHHHHHHHhc--cCCcEEEEeC------CHhhHHHHHH
Q 015894          116 VPAVVKVELIKLL-VSSGLAVVEATS--F-VSPKWVPQLADAKDVMAAIQNV--EGARFPVLTP------NLKGFEAAVA  183 (398)
Q Consensus       116 ~~~~~k~~ia~~L-~~aGv~~IEvG~--~-~~~~~~p~~~D~~~v~~~i~~~--~~~~l~~l~~------n~~~ie~a~~  183 (398)
                      -+.+..++=++.| .+.|+..|.+.-  | .+++      ...++++.+.+.  .+..+.+-++      +.+-++...+
T Consensus       222 rs~e~Vv~Ei~~l~~~~gv~~~~~~Dd~f~~~~~------~~~~l~~~l~~~~~l~i~w~~~~r~~~i~~d~ell~~l~~  295 (497)
T TIGR02026       222 RDPKKFVDEIEWLVRTHGVGFFILADEEPTINRK------KFQEFCEEIIARNPISVTWGINTRVTDIVRDADILHLYRR  295 (497)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEEEecccccCHH------HHHHHHHHHHhcCCCCeEEEEecccccccCCHHHHHHHHH
Confidence            3555555544444 568998876631  1 1111      123444444322  2344444343      2234677788


Q ss_pred             cCCCEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCC
Q 015894          184 AGAKEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGC  262 (398)
Q Consensus       184 ~Gv~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Ga  262 (398)
                      +|+..|.+-+ +.|+-.+ ..+++..  ..+...++++.++++|+.+.++++  +|.|.+   +.+.+.+.++.+.+++.
T Consensus       296 aG~~~v~iGiES~~~~~L-~~~~K~~--t~~~~~~ai~~l~~~Gi~~~~~~I--~G~P~e---t~e~~~~t~~~~~~l~~  367 (497)
T TIGR02026       296 AGLVHISLGTEAAAQATL-DHFRKGT--TTSTNKEAIRLLRQHNILSEAQFI--TGFENE---TDETFEETYRQLLDWDP  367 (497)
T ss_pred             hCCcEEEEccccCCHHHH-HHhcCCC--CHHHHHHHHHHHHHCCCcEEEEEE--EECCCC---CHHHHHHHHHHHHHcCC
Confidence            9998887743 3344333 2344421  244566788999999999876655  677765   57888888888999999


Q ss_pred             CEEEEccCcCcCCHHHHHHHHHHHHhh
Q 015894          263 SEISLGDTIGVGTPGTVIPMLEAVLDA  289 (398)
Q Consensus       263 d~I~L~DT~G~~~P~~v~~lv~~l~~~  289 (398)
                      +.+.+    ..++|.-=.++.+.+++.
T Consensus       368 ~~~~~----~~~tP~PGT~l~~~~~~~  390 (497)
T TIGR02026       368 DQANW----LMYTPWPFTSLFGELSDR  390 (497)
T ss_pred             CceEE----EEecCCCCcHHHHHHHhh
Confidence            88766    467776555666666553

This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.

>TIGR01521 FruBisAldo_II_B fructose-bisphosphate aldolase, class II, Calvin cycle subtype

Probab=94.30  E-value=0.65  Score=47.19  Aligned_cols=117  Identities=15%  Similarity=0.183  Sum_probs=84.1

Q ss_pred             HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE-EEccCc-CcCCHHHHHHHHHHHHhhCCC
Q 015894          215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEI-SLGDTI-GVGTPGTVIPMLEAVLDAVPV  292 (398)
Q Consensus       215 ~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I-~L~DT~-G~~~P~~v~~lv~~l~~~~p~  292 (398)
                      ++++.+.|++.++-|-+ +.+         .+.+.+..+++.+.+.+...| .+.-.. ..+....+..++..+.+..+.
T Consensus         4 ~k~iL~~A~~~~yAV~A-fN~---------~n~e~~~aii~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~~~~~ae~~~~   73 (347)
T TIGR01521         4 MRQLLDHAAEFGYGVPA-FNV---------NNMEQMRAIMEAADKTDSPVILQASRGARSYAGAPFLRHLILAAIEEYPH   73 (347)
T ss_pred             HHHHHHHHHHcCceEEE-Eee---------CCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhCCC
Confidence            45678889999997742 221         467899999999999998754 443322 233346678888888887765


Q ss_pred             CeEEEEeCCccchHHHHHHHHHHhCCC--EEeeccc-------cCCCCCCCCCCCCCc-cHHHHHHHHHh
Q 015894          293 DKLAVHFHDTYGQALSNILASLQMGIS--TVDSSVS-------GLGGCPYAKGASGNV-ATEDVVYMLNG  352 (398)
Q Consensus       293 ~~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~-------GlGecp~a~graGNa-~lE~vv~~L~~  352 (398)
                      +|+.+|.  |.|.....+..|+++|.+  +||+|-.       .+-+         |. -|-+++.+.+.
T Consensus        74 VPValHL--DHg~~~e~i~~Ai~~GFtSVMiDgS~l~~~~~~~p~eE---------NI~~Tkevve~Ah~  132 (347)
T TIGR01521        74 IPVVMHQ--DHGNSPATCQRAIQLGFTSVMMDGSLREDAKTPADYDY---------NVRVTAEVVAFAHA  132 (347)
T ss_pred             CcEEEEC--CCCCCHHHHHHHHHcCCCEEeecCcCCcccCCCCCHHH---------HHHHHHHHHHHHHH
Confidence            5777654  777788999999999998  6799976       5655         54 56667777664

Members of this family are class II examples of the enzyme fructose-bisphosphate aldolase, an enzyme both of glycolysis and (in the opposite direction) of the Calvin cycle of CO2 fixation. A deep split separates the tightly conserved yeast/E. coli/Mycobacterium subtype (all species lacking the Calvin cycle) represented by model TIGR01520 from a broader group of aldolases that includes both tagatose- and fructose-bisphosphate aldolases. This model represents a distinct, elongated, very well conserved subtype within the latter group. Most species with this aldolase subtype have the Calvin cycle.

>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3

Probab=94.29  E-value=0.11  Score=47.11  Aligned_cols=169  Identities=17%  Similarity=0.155  Sum_probs=83.9

Q ss_pred             HHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC-----C---------------H----hhHHHH
Q 015894          126 KLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP-----N---------------L----KGFEAA  181 (398)
Q Consensus       126 ~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~-----n---------------~----~~ie~a  181 (398)
                      +.+.++|++.||+.......+.+...+.+++.+.+++ .++++.++..     .               .    +.++.|
T Consensus         2 ~~~~~~G~~~vE~~~~~~~~~~~~~~~~~~~~~~~~~-~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~i~~a   80 (213)
T PF01261_consen    2 EAAAEAGFDGVELRFDDGQPWDEKDDEAEELRRLLED-YGLKIASLHPPTNFWSPDEENGSANDEREEALEYLKKAIDLA   80 (213)
T ss_dssp             HHHHHTTHSEEEEEHHHHSHHTHHHHHHHHHHHHHHH-TTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHHHHHHHHHHH
T ss_pred             hHHHHcCCCEEEEecCCCcccccchHHHHHHHHHHHH-cCCeEEEEecccccccccccccCcchhhHHHHHHHHHHHHHH
Confidence            5677888888888764321110000122333333332 2555444321     1               1    135667


Q ss_pred             HHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCC
Q 015894          182 VAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMG  261 (398)
Q Consensus       182 ~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~G  261 (398)
                      ...|++.+.+....-+...........+...+.+..+.++|++.|+.+...-.  .+.......+.+.+.++   +.+.+
T Consensus        81 ~~lg~~~i~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~i~lE~~--~~~~~~~~~~~~~~~~~---l~~~~  155 (213)
T PF01261_consen   81 KRLGAKYIVVHSGRYPSGPEDDTEENWERLAENLRELAEIAEEYGVRIALENH--PGPFSETPFSVEEIYRL---LEEVD  155 (213)
T ss_dssp             HHHTBSEEEEECTTESSSTTSSHHHHHHHHHHHHHHHHHHHHHHTSEEEEE-S--SSSSSSEESSHHHHHHH---HHHHT
T ss_pred             HHhCCCceeecCcccccccCCCHHHHHHHHHHHHHHHHhhhhhhcceEEEecc--cCccccchhhHHHHHHH---HhhcC
Confidence            78899999887551000001111112445666777888999999977653222  11111111222454444   44555


Q ss_pred             CCEEE-EccCcCcCC-HHHHHHHHHHHHhhCCCCeEEEEeCCccc
Q 015894          262 CSEIS-LGDTIGVGT-PGTVIPMLEAVLDAVPVDKLAVHFHDTYG  304 (398)
Q Consensus       262 ad~I~-L~DT~G~~~-P~~v~~lv~~l~~~~p~~~l~~H~Hnd~G  304 (398)
                      -+.+. .-|+.-... .....+.++.+...    -.++|.+|..+
T Consensus       156 ~~~~~i~~D~~h~~~~~~~~~~~i~~~~~~----i~~vHi~D~~~  196 (213)
T PF01261_consen  156 SPNVGICFDTGHLIMAGEDPDEAIKRLAPR----IKHVHIKDANG  196 (213)
T ss_dssp             TTTEEEEEEHHHHHHTTHHHHHHHHHHHHG----EEEEEE-EESS
T ss_pred             CCcceEEEehHHHHHcCCCHHHHHHHhhcc----eeEEEEeCCCC
Confidence            44333 335422221 24555666666554    38899999888

1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....

>COG0274 DeoC Deoxyribose-phosphate aldolase [Nucleotide transport and metabolism]

Probab=94.28  E-value=1.3  Score=42.23  Aligned_cols=109  Identities=21%  Similarity=0.217  Sum_probs=79.5

Q ss_pred             EeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCC---HHHHHHHHHHHHhhCCC-----CeEEEEeCCccc
Q 015894          233 LSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGT---PGTVIPMLEAVLDAVPV-----DKLAVHFHDTYG  304 (398)
Q Consensus       233 l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~---P~~v~~lv~~l~~~~p~-----~~l~~H~Hnd~G  304 (398)
                      ++.+.|.|....++.-.+.+ ++.+.+.|||+|-+.=..|.+.   .+.|++-|+.+++..++     +.|+.-.=++.-
T Consensus        63 v~tVigFP~G~~~t~~K~~E-a~~ai~~GAdEiDmVinig~~k~g~~~~V~~eI~~v~~a~~~~~~lKVIlEt~~Lt~ee  141 (228)
T COG0274          63 VCTVIGFPLGANTTAVKAAE-AREAIENGADEIDMVINIGALKSGNWEAVEREIRAVVEACADAVVLKVILETGLLTDEE  141 (228)
T ss_pred             EEEecCCCCCCChHHHHHHH-HHHHHHcCCCeeeeeeeHHHHhcCCHHHHHHHHHHHHHHhCCCceEEEEEeccccCHHH
Confidence            55566778654433334444 6778899999998887777554   57788888888887764     235555566666


Q ss_pred             hHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q 015894          305 QALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNG  352 (398)
Q Consensus       305 lA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~  352 (398)
                      + ...+..++++||++|=+|-+.-         +|++..|++..+.+-
T Consensus       142 ~-~~A~~i~~~aGAdFVKTSTGf~---------~~gAT~edv~lM~~~  179 (228)
T COG0274         142 K-RKACEIAIEAGADFVKTSTGFS---------AGGATVEDVKLMKET  179 (228)
T ss_pred             H-HHHHHHHHHhCCCEEEcCCCCC---------CCCCCHHHHHHHHHH
Confidence            6 6778889999999999997533         558889998887764

>PRK09358 adenosine deaminase; Provisional

Probab=94.27  E-value=4.4  Score=40.51  Aligned_cols=133  Identities=20%  Similarity=0.144  Sum_probs=77.3

Q ss_pred             hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHH-HhCCCcEEEEEeeeecCCCCCCCCHHHHHHHH
Q 015894          176 KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAA-RELSIPVRGYLSCVVGCPVEGMVPPSKVAYVS  254 (398)
Q Consensus       176 ~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~a-k~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a  254 (398)
                      ..++.++..|+..+.++..  +.+ ....+.+.++.++.+.+.++.| ++.|+.+...++..    .  ..+++...+.+
T Consensus        85 ~~~~e~~~~Gvty~E~~~~--p~~-~~~~gl~~~~~~~a~~~~~~~a~~~~gi~~~li~~~~----r--~~~~~~~~~~~  155 (340)
T PRK09358         85 EYLEDAAADGVVYAEIRFD--PQL-HTERGLPLEEVVEAVLDGLRAAEAEFGISVRLILCFM----R--HFGEEAAAREL  155 (340)
T ss_pred             HHHHHHHHcCCEEEEEEeC--hhh-hhhcCCCHHHHHHHHHHHHHHHHHhcCceEEEEEEec----C--CCCHHHHHHHH
Confidence            3456778899987766643  221 1234788899998888777665 45687766443321    1  12344444444


Q ss_pred             HHHHh--CCCCEE--EEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHH-hCCCEE
Q 015894          255 KQLYD--MGCSEI--SLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQ-MGISTV  321 (398)
Q Consensus       255 ~~l~~--~Gad~I--~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~-aGa~~V  321 (398)
                      +.+.+  .+-..+  .++-.-....|..+...++..++.  ++++.+|+....+  ..+...|++ .|+++|
T Consensus       156 ~~~~~~~~~~~vvg~~l~g~e~~~~~~~~~~~~~~A~~~--g~~~~~H~~E~~~--~~~~~~al~~lg~~ri  223 (340)
T PRK09358        156 EALAARYRDDGVVGFDLAGDELGFPPSKFARAFDRARDA--GLRLTAHAGEAGG--PESIWEALDELGAERI  223 (340)
T ss_pred             HHHHHHhcCCcEEEEeCCCcCCCCCHHHHHHHHHHHHHC--CCCeEEcCCCCCc--hhHHHHHHHHcCCccc
Confidence            44443  332333  333221224667777777777663  4578888876544  235566776 788764

>PRK13347 coproporphyrinogen III oxidase; Provisional

Probab=94.27  E-value=2.2  Score=44.74  Aligned_cols=111  Identities=14%  Similarity=0.084  Sum_probs=73.6

Q ss_pred             CHHHHHHHHHhc----cCCcEEEEeC----CHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 015894          152 DAKDVMAAIQNV----EGARFPVLTP----NLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAR  223 (398)
Q Consensus       152 D~~~v~~~i~~~----~~~~l~~l~~----n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak  223 (398)
                      +.+++++.+++.    ++.++++-+.    +.+.++...++|+.+|.+-+-.-+-.....+|+.  ...+.+.++++.++
T Consensus       121 ~l~~ll~~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~~~~vl~~l~R~--~~~~~~~~ai~~lr  198 (453)
T PRK13347        121 QFERLMAALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDFDPQVQKAINRI--QPEEMVARAVELLR  198 (453)
T ss_pred             HHHHHHHHHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCCCHHHHHHhCCC--CCHHHHHHHHHHHH
Confidence            345555555532    3445554442    3567888899999998885544433334445442  23445567788999


Q ss_pred             hCCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcc
Q 015894          224 ELSIP-VRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGD  269 (398)
Q Consensus       224 ~~G~~-v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~D  269 (398)
                      +.|+. |.+.++  +|.|..   +.+.+.+.++.+.++|++.|.+-.
T Consensus       199 ~~G~~~v~~dli--~GlPgq---t~e~~~~tl~~~~~l~p~~i~~y~  240 (453)
T PRK13347        199 AAGFESINFDLI--YGLPHQ---TVESFRETLDKVIALSPDRIAVFG  240 (453)
T ss_pred             hcCCCcEEEeEE--EeCCCC---CHHHHHHHHHHHHhcCCCEEEEec
Confidence            99986 666665  666754   688888999999999999887654

>PF01116 F_bP_aldolase: Fructose-bisphosphate aldolase class-II; InterPro: IPR000771 Fructose-bisphosphate aldolase [, ] is a glycolytic enzyme that catalyses the reversible aldol cleavage or condensation of fructose-1,6-bisphosphate into dihydroxyacetone-phosphate and glyceraldehyde 3-phosphate

Probab=94.26  E-value=0.26  Score=48.77  Aligned_cols=121  Identities=16%  Similarity=0.257  Sum_probs=85.8

Q ss_pred             HHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEc-cCcCcCCHHHHHHHHHHHHhh
Q 015894          212 LIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLG-DTIGVGTPGTVIPMLEAVLDA  289 (398)
Q Consensus       212 l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~-DT~G~~~P~~v~~lv~~l~~~  289 (398)
                      |.+++++.+.|++.|+-|-+ +.    +     ++.+.+..+++.+.+.+... |.+. .+...+....+..++..+.++
T Consensus         2 lv~~~~ll~~A~~~~yAV~A-fN----~-----~n~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~   71 (287)
T PF01116_consen    2 LVNMKELLKKAKEGGYAVPA-FN----V-----YNLETARAVIEAAEELNSPVILQISPSEVKYMGLEYLAAMVKAAAEE   71 (287)
T ss_dssp             BHHHHHHHHHHHHHT-BEEE-EE----------SSHHHHHHHHHHHHHTTS-EEEEEEHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHCCCeEEE-Ee----e-----CCHHHHHHHHHHHHHhCCCEEEEcchhhhhhhhHHHHHHHHHHHHHH
Confidence            35678889999999998752 22    1     36788899999999998875 4433 345555556778888888888


Q ss_pred             CCCCeEEEEeCCccchHHHHHHHHHHhCCC--EEeeccccCCCCCCCCCCCCCc-cHHHHHHHHHhCC
Q 015894          290 VPVDKLAVHFHDTYGQALSNILASLQMGIS--TVDSSVSGLGGCPYAKGASGNV-ATEDVVYMLNGLG  354 (398)
Q Consensus       290 ~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGecp~a~graGNa-~lE~vv~~L~~~G  354 (398)
                      .. +|+.+|.  |.|..+.....|+++|.+  ++|+|-..+-+         |. -|-+++.+.+..|
T Consensus        72 ~~-vPValHL--DH~~~~e~i~~ai~~GftSVM~DgS~l~~ee---------Ni~~T~~vv~~ah~~g  127 (287)
T PF01116_consen   72 AS-VPVALHL--DHGKDFEDIKRAIDAGFTSVMIDGSALPFEE---------NIAITREVVEYAHAYG  127 (287)
T ss_dssp             ST-SEEEEEE--EEE-SHHHHHHHHHHTSSEEEEE-TTS-HHH---------HHHHHHHHHHHHHHTT
T ss_pred             cC-CCEEeec--ccCCCHHHHHHHHHhCcccccccCCcCCHHH---------HHHHHHHHHHhhhhhC
Confidence            75 5676654  566669999999999998  67999888888         66 5677777777443

There are two classes of fructose-bisphosphate aldolases with different catalytic mechanisms. Class-II aldolases [], mainly found in prokaryotes and fungi, are homodimeric enzymes, which require a divalent metal ion, generally zinc, for their activity. This family also includes the Escherichia coli galactitol operon protein, gatY, which catalyses the transformation of tagatose 1,6-bisphosphate into glycerone phosphate and D-glyceraldehyde 3-phosphate; and E. coli N-acetyl galactosamine operon protein, agaY, which catalyses the same reaction. There are two histidine residues in the first half of the sequence of these enzymes that have been shown to be involved in binding a zinc ion [].; GO: 0008270 zinc ion binding, 0016832 aldehyde-lyase activity, 0005975 carbohydrate metabolic process; PDB: 3Q94_A 1RVG_B 1RV8_C 3C4U_A 3C56_B 3C52_A 2FJK_A 3N9R_P 3N9S_A 1GVF_B ....

>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional

Probab=94.25  E-value=0.27  Score=46.92  Aligned_cols=96  Identities=16%  Similarity=0.150  Sum_probs=65.4

Q ss_pred             CCHHHHHHHHHHHHhCCCCE--EEEccCcCcCCHHHH--HHHHHHHHhhCCCCeEEEEeC-CccchHHHHHHHHHHhCCC
Q 015894          245 VPPSKVAYVSKQLYDMGCSE--ISLGDTIGVGTPGTV--IPMLEAVLDAVPVDKLAVHFH-DTYGQALSNILASLQMGIS  319 (398)
Q Consensus       245 ~~~~~l~~~a~~l~~~Gad~--I~L~DT~G~~~P~~v--~~lv~~l~~~~p~~~l~~H~H-nd~GlA~ANalaAl~aGa~  319 (398)
                      .++..+.+.++++.+.|++.  +-+.|  |...|.-.  .+.++.+++..|..++.+|.| +|....+   -.+.++|++
T Consensus        16 ~d~~~l~~~~~~l~~~~~~~~H~DimD--g~fvpn~~~G~~~v~~lr~~~~~~~lDvHLm~~~p~~~i---~~~~~~Gad   90 (228)
T PTZ00170         16 ADFSKLADEAQDVLSGGADWLHVDVMD--GHFVPNLSFGPPVVKSLRKHLPNTFLDCHLMVSNPEKWV---DDFAKAGAS   90 (228)
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEEeccc--CccCCCcCcCHHHHHHHHhcCCCCCEEEEECCCCHHHHH---HHHHHcCCC
Confidence            46788888999999999987  55566  88888522  367888988878889999999 5544433   556688999


Q ss_pred             EEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCC
Q 015894          320 TVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVR  356 (398)
Q Consensus       320 ~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~  356 (398)
                      +|.  +.+-+         +.-.++..+..+++.|..
T Consensus        91 ~it--vH~ea---------~~~~~~~~l~~ik~~G~~  116 (228)
T PTZ00170         91 QFT--FHIEA---------TEDDPKAVARKIREAGMK  116 (228)
T ss_pred             EEE--EeccC---------CchHHHHHHHHHHHCCCe
Confidence            874  33222         122155666666655543

>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase

Probab=94.23  E-value=4  Score=42.78  Aligned_cols=150  Identities=11%  Similarity=0.120  Sum_probs=89.4

Q ss_pred             CCCEEEEecCCCCCcccCCCCHHHHHHHHHhc----cCCcEEEEe-C---CHhhHHHHHHcCCCEEEEeccCchHHHhhh
Q 015894          132 GLAVVEATSFVSPKWVPQLADAKDVMAAIQNV----EGARFPVLT-P---NLKGFEAAVAAGAKEVAIFASASESFSKSN  203 (398)
Q Consensus       132 Gv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~----~~~~l~~l~-~---n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~  203 (398)
                      ++..|-+|-.. |...+ ..+..++++.++..    .+..+.+-+ +   +.+.++...++|+..|.|-+-.-+-.....
T Consensus       102 ~v~~I~fgGGt-P~~l~-~~~l~~ll~~i~~~~~~~~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS~~~~~l~~  179 (455)
T TIGR00538       102 HVSQLHWGGGT-PTYLS-PEQISRLMKLIRENFPFNADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQDFNKEVQQA  179 (455)
T ss_pred             ceEEEEECCCC-cCCCC-HHHHHHHHHHHHHhCCCCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCCCCHHHHHH
Confidence            56666665322 21111 12334555555532    234454444 2   346688889999999888543333222234


Q ss_pred             cCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccC------------
Q 015894          204 INCTIEDSLIRYRDVALAARELSIP-VRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDT------------  270 (398)
Q Consensus       204 ~~~s~~~~l~~~~~~v~~ak~~G~~-v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT------------  270 (398)
                      +|+.  ...+.+.++++.+++.|+. +.+.++  +|.|..   +.+.+.+.++.+.++|++.|.+-.-            
T Consensus       180 l~r~--~~~~~~~~ai~~l~~~G~~~v~~dli--~GlPgq---t~e~~~~tl~~~~~l~~~~is~y~L~~~p~~~~~~~~  252 (455)
T TIGR00538       180 VNRI--QPEEMIFELMNHAREAGFTSINIDLI--YGLPKQ---TKESFAKTLEKVAELNPDRLAVFNYAHVPWVKPAQRK  252 (455)
T ss_pred             hCCC--CCHHHHHHHHHHHHhcCCCcEEEeEE--eeCCCC---CHHHHHHHHHHHHhcCCCEEEEecCccccchhHHHhc
Confidence            4442  2245566788999999996 555555  666653   6788888899999999998765432            


Q ss_pred             ---cCcCCHHHHHHHHHHHHhhC
Q 015894          271 ---IGVGTPGTVIPMLEAVLDAV  290 (398)
Q Consensus       271 ---~G~~~P~~v~~lv~~l~~~~  290 (398)
                         .....+++..+++..+.+.+
T Consensus       253 ~~~~~~~~~e~~~~~~~~~~~~L  275 (455)
T TIGR00538       253 IPEAALPSAEEKLDILQETIAFL  275 (455)
T ss_pred             ccccCCCCHHHHHHHHHHHHHHH
Confidence               11234666666766666543

This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=94.20  E-value=0.96  Score=44.59  Aligned_cols=103  Identities=15%  Similarity=0.150  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCC-CCEEEE-----ccCc-Cc---CCHH
Q 015894          208 IEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMG-CSEISL-----GDTI-GV---GTPG  277 (398)
Q Consensus       208 ~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~G-ad~I~L-----~DT~-G~---~~P~  277 (398)
                      .+..++.+.+   ..++.+..+.+.|..         .+++.+.+.++.+.++| +|.|.|     .-.. |.   ..|+
T Consensus        76 ~~~~~~~~~~---~~~~~~~p~i~si~g---------~~~~~~~~~a~~~~~aG~~D~iElN~~cP~~~~gg~~~~~~~~  143 (301)
T PRK07259         76 VDAFIEEELP---WLEEFDTPIIANVAG---------STEEEYAEVAEKLSKAPNVDAIELNISCPNVKHGGMAFGTDPE  143 (301)
T ss_pred             HHHHHHHHHH---HHhccCCcEEEEecc---------CCHHHHHHHHHHHhccCCcCEEEEECCCCCCCCCccccccCHH
Confidence            3444554433   223446666555541         36889999999999999 998877     1111 22   3589


Q ss_pred             HHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          278 TVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       278 ~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      .+.++++++++.. +.||.+..=.+.--...-+..+.++|++.|+.
T Consensus       144 ~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~a~~l~~~G~d~i~~  188 (301)
T PRK07259        144 LAYEVVKAVKEVV-KVPVIVKLTPNVTDIVEIAKAAEEAGADGLSL  188 (301)
T ss_pred             HHHHHHHHHHHhc-CCCEEEEcCCCchhHHHHHHHHHHcCCCEEEE
Confidence            9999999999887 45788876544443444455677899998865

>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2

Probab=94.17  E-value=1.4  Score=44.38  Aligned_cols=135  Identities=18%  Similarity=0.140  Sum_probs=84.3

Q ss_pred             HHHHHcCCCEEEEecc--------CchH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-C--CcEEEEEeeeecCCCCCCC
Q 015894          179 EAAVAAGAKEVAIFAS--------ASES--FSKSNINCTIEDSLIRYRDVALAAREL-S--IPVRGYLSCVVGCPVEGMV  245 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~--------~Sd~--~~~~~~~~s~~~~l~~~~~~v~~ak~~-G--~~v~~~l~~~fg~~~~~r~  245 (398)
                      +++.++|.|.|.|...        +|+.  ++...+|-|.++-.+...++++.+|+. |  +.+.+-++..-..+  .-.
T Consensus       156 ~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~--~g~  233 (338)
T cd04733         156 RLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQR--GGF  233 (338)
T ss_pred             HHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCC--CCC
Confidence            4667899999988655        4555  334566778888888888889888875 4  34544444211011  125


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEccCcCcCC---------------HHHHHHHHHHHHhhCCCCeEEE-EeCCccchHHHH
Q 015894          246 PPSKVAYVSKQLYDMGCSEISLGDTIGVGT---------------PGTVIPMLEAVLDAVPVDKLAV-HFHDTYGQALSN  309 (398)
Q Consensus       246 ~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~---------------P~~v~~lv~~l~~~~p~~~l~~-H~Hnd~GlA~AN  309 (398)
                      +++...++++.+.++|+|.|.+..  |...               +....++.+.+++.+.. ||.. -..+    ....
T Consensus       234 ~~eea~~ia~~Le~~Gvd~iev~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~v~i-PVi~~G~i~----t~~~  306 (338)
T cd04733         234 TEEDALEVVEALEEAGVDLVELSG--GTYESPAMAGAKKESTIAREAYFLEFAEKIRKVTKT-PLMVTGGFR----TRAA  306 (338)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEecC--CCCCCccccccccCCccccchhhHHHHHHHHHHcCC-CEEEeCCCC----CHHH
Confidence            788899999999999999988632  2110               11124566777777642 3333 2222    3456


Q ss_pred             HHHHHHhC-CCEEe
Q 015894          310 ILASLQMG-ISTVD  322 (398)
Q Consensus       310 alaAl~aG-a~~VD  322 (398)
                      +..+++.| +|.|-
T Consensus       307 a~~~l~~g~aD~V~  320 (338)
T cd04733         307 MEQALASGAVDGIG  320 (338)
T ss_pred             HHHHHHcCCCCeee
Confidence            67777777 56553

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5

Probab=94.16  E-value=0.036  Score=52.03  Aligned_cols=167  Identities=19%  Similarity=0.185  Sum_probs=96.7

Q ss_pred             HHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEE--EeCCH-hhHHHHHHcCCCEEEEeccCch
Q 015894          121 KVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPV--LTPNL-KGFEAAVAAGAKEVAIFASASE  197 (398)
Q Consensus       121 k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~n~-~~ie~a~~~Gv~~v~i~~~~Sd  197 (398)
                      -.+-++.|.++|++.+=+-... ..++|.+.-..+.++.+++.++..+-+  ++.+. +=++...++|++.|.+..-   
T Consensus        14 l~~~i~~l~~~g~d~lHiDiMD-g~fvpn~~~g~~~i~~i~~~~~~~~DvHLMv~~P~~~i~~~~~~g~~~i~~H~E---   89 (201)
T PF00834_consen   14 LEEEIKRLEEAGADWLHIDIMD-GHFVPNLTFGPDIIKAIRKITDLPLDVHLMVENPERYIEEFAEAGADYITFHAE---   89 (201)
T ss_dssp             HHHHHHHHHHTT-SEEEEEEEB-SSSSSSB-B-HHHHHHHHTTSSSEEEEEEESSSGGGHHHHHHHHT-SEEEEEGG---
T ss_pred             HHHHHHHHHHcCCCEEEEeecc-cccCCcccCCHHHHHHHhhcCCCcEEEEeeeccHHHHHHHHHhcCCCEEEEccc---
Confidence            3567888999999965552211 112344443456677788766655544  45565 4478889999998877542   


Q ss_pred             HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----ccCcCc
Q 015894          198 SFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL----GDTIGV  273 (398)
Q Consensus       198 ~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L----~DT~G~  273 (398)
                                   +.+...++++++|++|+.+...+.     |.   ++.+.+.++..     -+|.|-+    +...|.
T Consensus        90 -------------~~~~~~~~i~~ik~~g~k~Gialn-----P~---T~~~~~~~~l~-----~vD~VlvMsV~PG~~Gq  143 (201)
T PF00834_consen   90 -------------ATEDPKETIKYIKEAGIKAGIALN-----PE---TPVEELEPYLD-----QVDMVLVMSVEPGFGGQ  143 (201)
T ss_dssp             -------------GTTTHHHHHHHHHHTTSEEEEEE------TT---S-GGGGTTTGC-----CSSEEEEESS-TTTSSB
T ss_pred             -------------chhCHHHHHHHHHHhCCCEEEEEE-----CC---CCchHHHHHhh-----hcCEEEEEEecCCCCcc
Confidence                         223445678899999999876554     32   34444444332     3565433    333444


Q ss_pred             CCHHHHHHHHHHHHhhCCC----CeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894          274 GTPGTVIPMLEAVLDAVPV----DKLAVHFHDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       274 ~~P~~v~~lv~~l~~~~p~----~~l~~H~Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                      ..=..+.+.|+.+++..+.    ..|++    |=|.-..|+-...++||+.+
T Consensus       144 ~f~~~~~~KI~~l~~~~~~~~~~~~I~v----DGGI~~~~~~~~~~aGad~~  191 (201)
T PF00834_consen  144 KFIPEVLEKIRELRKLIPENGLDFEIEV----DGGINEENIKQLVEAGADIF  191 (201)
T ss_dssp             --HGGHHHHHHHHHHHHHHHTCGSEEEE----ESSESTTTHHHHHHHT--EE
T ss_pred             cccHHHHHHHHHHHHHHHhcCCceEEEE----ECCCCHHHHHHHHHcCCCEE
Confidence            4445566666666665432    34554    66777788888999999965

1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....

>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac)

Probab=94.15  E-value=3.3  Score=40.04  Aligned_cols=124  Identities=14%  Similarity=0.179  Sum_probs=72.4

Q ss_pred             CHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHH
Q 015894          174 NLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYV  253 (398)
Q Consensus       174 n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~  253 (398)
                      ..++++...+.|++.+-|.-.  |+              .+ ...++++.+.|+++.  ++       .|..+.+++.+.
T Consensus        78 d~~s~d~l~~~~~~~~KIaS~--dl--------------~n-~~lL~~~A~tgkPvI--lS-------TG~stl~EI~~A  131 (241)
T PF03102_consen   78 DEESVDFLEELGVPAYKIASG--DL--------------TN-LPLLEYIAKTGKPVI--LS-------TGMSTLEEIERA  131 (241)
T ss_dssp             SHHHHHHHHHHT-SEEEE-GG--GT--------------T--HHHHHHHHTT-S-EE--EE--------TT--HHHHHHH
T ss_pred             CHHHHHHHHHcCCCEEEeccc--cc--------------cC-HHHHHHHHHhCCcEE--EE-------CCCCCHHHHHHH
Confidence            344666777778888887422  11              11 245566677888875  33       345678888888


Q ss_pred             HHHHHhCCCCEEE-EccCcCcCCHHHHH--HHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE--eecccc
Q 015894          254 SKQLYDMGCSEIS-LGDTIGVGTPGTVI--PMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV--DSSVSG  327 (398)
Q Consensus       254 a~~l~~~Gad~I~-L~DT~G~~~P~~v~--~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V--D~Sv~G  327 (398)
                      ++.+.+.|...|. +==+.++=+|.+=.  ..+..+++.+| .++|+=-|.. |  +...++|+..||.+|  +.|+.-
T Consensus       132 v~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~~f~-~~vG~SDHt~-g--~~~~~~AvalGA~vIEKHfTldr  206 (241)
T PF03102_consen  132 VEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKERFG-VPVGYSDHTD-G--IEAPIAAVALGARVIEKHFTLDR  206 (241)
T ss_dssp             HHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHHHST-SEEEEEE-SS-S--SHHHHHHHHTT-SEEEEEB-S-T
T ss_pred             HHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHHhcC-CCEEeCCCCC-C--cHHHHHHHHcCCeEEEEEEECCC
Confidence            8888666655443 33344555554333  35888999999 6899999988 4  455789999999998  667653

It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.

>TIGR02668 moaA_archaeal probable molybdenum cofactor biosynthesis protein A, archaeal

Probab=94.14  E-value=4.8  Score=39.49  Aligned_cols=136  Identities=16%  Similarity=0.129  Sum_probs=84.8

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCC---H-hhHHHHHHcCCCEEE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPN---L-KGFEAAVAAGAKEVA  190 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n---~-~~ie~a~~~Gv~~v~  190 (398)
                      .++.++..++++.+.+.|+..|-++. ..|-..   .|..++++.+++. +..-..+..|   . +-++...++|++.|.
T Consensus        39 ~ls~eei~~~i~~~~~~gi~~I~~tG-GEPll~---~~l~~iv~~l~~~-g~~~v~i~TNG~ll~~~~~~l~~~g~~~v~  113 (302)
T TIGR02668        39 ELSPEEIERIVRVASEFGVRKVKITG-GEPLLR---KDLIEIIRRIKDY-GIKDVSMTTNGILLEKLAKKLKEAGLDRVN  113 (302)
T ss_pred             cCCHHHHHHHHHHHHHcCCCEEEEEC-cccccc---cCHHHHHHHHHhC-CCceEEEEcCchHHHHHHHHHHHCCCCEEE
Confidence            57889999999999999999888753 222111   2445556655543 3322233433   2 334566789999999


Q ss_pred             EeccC-chHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE
Q 015894          191 IFASA-SESFSKSNINCTIEDSLIRYRDVALAARELSIP-VRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE  264 (398)
Q Consensus       191 i~~~~-Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~-v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~  264 (398)
                      |.+.. ++...+ .+.  ....++.+.+.++.+++.|+. +.++..  + .+.   .+.+++.++++.+.+.|++.
T Consensus       114 iSld~~~~~~~~-~i~--~~~~~~~vl~~i~~~~~~G~~~v~i~~v--~-~~g---~n~~ei~~~~~~~~~~g~~~  180 (302)
T TIGR02668       114 VSLDTLDPEKYK-KIT--GRGALDRVIEGIESAVDAGLTPVKLNMV--V-LKG---INDNEIPDMVEFAAEGGAIL  180 (302)
T ss_pred             EEecCCCHHHhh-hcc--CCCcHHHHHHHHHHHHHcCCCcEEEEEE--E-eCC---CCHHHHHHHHHHHHhcCCEE
Confidence            86554 332212 222  123566777788888999986 654433  2 121   35677888999899999863

This model describes an archaeal family related, and predicted to be functionally equivalent, to molybdenum cofactor biosynthesis protein A (MoaA) of bacteria (see TIGR02666).

>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain

Probab=94.07  E-value=2.7  Score=41.65  Aligned_cols=138  Identities=18%  Similarity=0.099  Sum_probs=83.8

Q ss_pred             HHHHHcCCCEEEEeccC--------chH--HHhhhcCCCHHHHHHHHHHHHHHHHhC---CCcEEEEEeeeecCCCCCCC
Q 015894          179 EAAVAAGAKEVAIFASA--------SES--FSKSNINCTIEDSLIRYRDVALAAREL---SIPVRGYLSCVVGCPVEGMV  245 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~~--------Sd~--~~~~~~~~s~~~~l~~~~~~v~~ak~~---G~~v~~~l~~~fg~~~~~r~  245 (398)
                      +++.++|.|.|.|...-        |+.  +....+|-+.++-.+.+.++++.+|+.   ++.+.+-++....  ..+..
T Consensus       148 ~~a~~aGfDgveih~~~gyL~~qFlsp~~n~R~d~yGgs~enr~r~~~eii~avr~~~g~d~~i~vris~~~~--~~~g~  225 (327)
T cd02803         148 RRAKEAGFDGVEIHGAHGYLLSQFLSPYTNKRTDEYGGSLENRARFLLEIVAAVREAVGPDFPVGVRLSADDF--VPGGL  225 (327)
T ss_pred             HHHHHcCCCEEEEcchhhhHHHHhcCccccCCCcccCCCHHHHHHHHHHHHHHHHHHcCCCceEEEEechhcc--CCCCC
Confidence            56678999998886541        221  233445667777777778888888874   3344443442110  11235


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEccCcCcCC----------HHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHH
Q 015894          246 PPSKVAYVSKQLYDMGCSEISLGDTIGVGT----------PGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQ  315 (398)
Q Consensus       246 ~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~----------P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~  315 (398)
                      +++...++++.+.++|+|.|.+......-.          +..-.+.++.+++.++ +||..-.--+   ....+..+++
T Consensus       226 ~~~e~~~la~~l~~~G~d~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~ir~~~~-iPVi~~Ggi~---t~~~a~~~l~  301 (327)
T cd02803         226 TLEEAIEIAKALEEAGVDALHVSGGSYESPPPIIPPPYVPEGYFLELAEKIKKAVK-IPVIAVGGIR---DPEVAEEILA  301 (327)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeCCCCCcccccccCCCCCCcchhHHHHHHHHHHCC-CCEEEeCCCC---CHHHHHHHHH
Confidence            788999999999999999998765432211          1233466777777764 3454433221   2455667777


Q ss_pred             h-CCCEEe
Q 015894          316 M-GISTVD  322 (398)
Q Consensus       316 a-Ga~~VD  322 (398)
                      . ||+.|-
T Consensus       302 ~g~aD~V~  309 (327)
T cd02803         302 EGKADLVA  309 (327)
T ss_pred             CCCCCeee
Confidence            7 577654

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd01335 Radical_SAM Radical SAM superfamily

Probab=94.04  E-value=3.2  Score=36.38  Aligned_cols=136  Identities=14%  Similarity=0.109  Sum_probs=81.4

Q ss_pred             HHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-cCCcEEEEeC----CHhhHHHHHHcCCCEEEEec
Q 015894          119 VVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-EGARFPVLTP----NLKGFEAAVAAGAKEVAIFA  193 (398)
Q Consensus       119 ~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~~~~l~~l~~----n~~~ie~a~~~Gv~~v~i~~  193 (398)
                      ++..+++......|+..+-++..- |-..|   ...++++.+++. ++..+...+.    +.+.++...++|+..+.+.+
T Consensus        31 ~~~~~~~~~~~~~~~~~i~~~gge-p~~~~---~~~~~i~~~~~~~~~~~~~i~T~~~~~~~~~~~~l~~~g~~~i~i~l  106 (204)
T cd01335          31 EEILDIVLEAKERGVEVVILTGGE-PLLYP---ELAELLRRLKKELPGFEISIETNGTLLTEELLKELKELGLDGVGVSL  106 (204)
T ss_pred             HHHHHHHHHHHhcCceEEEEeCCc-CCccH---hHHHHHHHHHhhCCCceEEEEcCcccCCHHHHHHHHhCCCceEEEEc
Confidence            566777777788888887775421 11011   233444455433 4666665553    35678888999999999877


Q ss_pred             cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCC-CCE
Q 015894          194 SASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMG-CSE  264 (398)
Q Consensus       194 ~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~G-ad~  264 (398)
                      ...+......++ .....+++..+.++.+++.|+.+.+.+.  .|.+..   +.+.+.+.++.+.+.+ ++.
T Consensus       107 e~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~i--~g~~~~---~~~~~~~~~~~l~~~~~~~~  172 (204)
T cd01335         107 DSGDEEVADKIR-GSGESFKERLEALKELREAGLGLSTTLL--VGLGDE---DEEDDLEELELLAEFRSPDR  172 (204)
T ss_pred             ccCCHHHHHHHh-cCCcCHHHHHHHHHHHHHcCCCceEEEE--EecCCC---hhHHHHHHHHHHHhhcCcch
Confidence            655544333332 1112345556677788888998876666  443432   2466666666676665 443

Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. Mechanistically, they share the transfer of a single electron from the iron-sulfur cluster to SAM, which leads to its reductive cleavage to methionine and a 5'-deoxyadenosyl radical, which, in turn, abstracts a hydrogen from the appropriately positioned carbon atom. Depending on the enzyme, SAM is consumed during this process or it is restored and reused. Radical SAM enzymes catalyze steps in metabolism, DNA repair, the biosynthesis of vitamins and coenzymes, and the biosynthesis of many antibiotics. Examples are biotin synthase (BioB), lipoyl synthase (LipA), pyruvate formate-lyase (PFL), coproporphyrinogen oxidase (HemN), lysine 2,3-aminomutase (LAM), anaerobic ribonucleotide reductase (ARR), and MoaA, an enzyme o

>PRK07565 dihydroorotate dehydrogenase 2; Reviewed

Probab=94.04  E-value=2.5  Score=42.41  Aligned_cols=79  Identities=16%  Similarity=0.125  Sum_probs=55.3

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEE---c-----cCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHh
Q 015894          245 VPPSKVAYVSKQLYDMGCSEISL---G-----DTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQM  316 (398)
Q Consensus       245 ~~~~~l~~~a~~l~~~Gad~I~L---~-----DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~a  316 (398)
                      .+++.+.++++.+.++|+|.|.|   |     +..|...+..+.++++.+++... +||.+..=-+......-+.++.++
T Consensus       111 ~~~~e~~~~a~~~~~agad~ielN~scpp~~~~~~g~~~~~~~~eil~~v~~~~~-iPV~vKl~p~~~~~~~~a~~l~~~  189 (334)
T PRK07565        111 SSAGGWVDYARQIEQAGADALELNIYYLPTDPDISGAEVEQRYLDILRAVKSAVS-IPVAVKLSPYFSNLANMAKRLDAA  189 (334)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEeCCCCCCCCCCccccHHHHHHHHHHHHHhccC-CcEEEEeCCCchhHHHHHHHHHHc
Confidence            35678889999999999998877   2     33454445668899999998764 567777544443333444555679


Q ss_pred             CCCEEeec
Q 015894          317 GISTVDSS  324 (398)
Q Consensus       317 Ga~~VD~S  324 (398)
                      |++.|..+
T Consensus       190 G~dgI~~~  197 (334)
T PRK07565        190 GADGLVLF  197 (334)
T ss_pred             CCCeEEEE
Confidence            99988664

>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]

Probab=93.99  E-value=1.3  Score=41.72  Aligned_cols=154  Identities=19%  Similarity=0.194  Sum_probs=90.1

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCc--ccCC-----------CCHHHHHHHHHhc-c-CCcEEE--Ee-CCH--
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKW--VPQL-----------ADAKDVMAAIQNV-E-GARFPV--LT-PNL--  175 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~--~p~~-----------~D~~~v~~~i~~~-~-~~~l~~--l~-~n~--  175 (398)
                      .+.++.++|.+.|+.-|.+.||.|.|.+...  .|..           ...+.+++.+++. + ++.+..  +. .|.  
T Consensus        29 P~v~~T~kilkglq~gG~dIIELGvPfSDp~ADGPtIq~~n~~aL~ng~tl~~i~emvk~ar~~gvt~PIiLmgYYNPIl  108 (268)
T KOG4175|consen   29 PDVSTTAKILKGLQSGGSDIIELGVPFSDPLADGPTIQAANRRALLNGTTLNSIIEMVKEARPQGVTCPIILMGYYNPIL  108 (268)
T ss_pred             CcHHHHHHHHHHHhcCCcCeEEecCccCccccCCchhhhhHHHHHHcCCcHHHHHHHHHHhcccCcccceeeeecccHHH
Confidence            4567889999999999999999998765321  1211           1233445555532 2 333322  22 231  


Q ss_pred             -----hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHH
Q 015894          176 -----KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKV  250 (398)
Q Consensus       176 -----~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l  250 (398)
                           +-++.+.++|+..+-|.+-            -+||+    ..+-.+||++|+....-+         ..+++++-
T Consensus       109 ~yG~e~~iq~ak~aGanGfiivDl------------PpEEa----~~~Rne~~k~gislvpLv---------aPsTtdeR  163 (268)
T KOG4175|consen  109 RYGVENYIQVAKNAGANGFIIVDL------------PPEEA----ETLRNEARKHGISLVPLV---------APSTTDER  163 (268)
T ss_pred             hhhHHHHHHHHHhcCCCceEeccC------------ChHHH----HHHHHHHHhcCceEEEee---------CCCChHHH
Confidence                 2356778899987766432            23333    345678999999875322         22334433


Q ss_pred             HHHHHHHHhCCCCEEEEccCcCcCCH-----HHHHHHHHHHHhhCCCCeEEE
Q 015894          251 AYVSKQLYDMGCSEISLGDTIGVGTP-----GTVIPMLEAVLDAVPVDKLAV  297 (398)
Q Consensus       251 ~~~a~~l~~~Gad~I~L~DT~G~~~P-----~~v~~lv~~l~~~~p~~~l~~  297 (398)
                      .++.-.+.   -.-||+.-.+|.---     ..+..++.++|+...+.|+.+
T Consensus       164 mell~~~a---dsFiYvVSrmG~TG~~~svn~~l~~L~qrvrk~t~dtPlAV  212 (268)
T KOG4175|consen  164 MELLVEAA---DSFIYVVSRMGVTGTRESVNEKLQSLLQRVRKATGDTPLAV  212 (268)
T ss_pred             HHHHHHhh---cceEEEEEeccccccHHHHHHHHHHHHHHHHHhcCCCceeE
Confidence            33322222   235777777776433     456778888888776666665

>PRK13523 NADPH dehydrogenase NamA; Provisional

Probab=93.99  E-value=2  Score=43.39  Aligned_cols=135  Identities=19%  Similarity=0.166  Sum_probs=83.8

Q ss_pred             HHHHHcCCCEEEEecc--------CchH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecCCCCCCCCH
Q 015894          179 EAAVAAGAKEVAIFAS--------ASES--FSKSNINCTIEDSLIRYRDVALAAREL-SIPVRGYLSCVVGCPVEGMVPP  247 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~--------~Sd~--~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~~v~~~l~~~fg~~~~~r~~~  247 (398)
                      ++|.++|.|.|.|...        +|+.  ++...+|-|.+.-.+.+.++++..|+. ++.|.+-++..-..+  +-.++
T Consensus       149 ~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~RtD~yGGslenR~Rf~~eii~~ir~~~~~~v~vRis~~d~~~--~G~~~  226 (337)
T PRK13523        149 VRAKEAGFDVIEIHGAHGYLINEFLSPLSNKRTDEYGGSPENRYRFLREIIDAVKEVWDGPLFVRISASDYHP--GGLTV  226 (337)
T ss_pred             HHHHHcCCCEEEEccccchHHHHhcCCccCCcCCCCCCCHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC--CCCCH
Confidence            4667899999988654        2443  244455667777777778888877775 455544444211111  12468


Q ss_pred             HHHHHHHHHHHhCCCCEEEEccCcCcC-------CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhC-CC
Q 015894          248 SKVAYVSKQLYDMGCSEISLGDTIGVG-------TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMG-IS  319 (398)
Q Consensus       248 ~~l~~~a~~l~~~Gad~I~L~DT~G~~-------~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aG-a~  319 (398)
                      ++..++++.+.+.|+|.|.+.  .|..       .|....++.+.+++.+...-+..-.-++    ...+.++++.| +|
T Consensus       227 ~e~~~i~~~l~~~gvD~i~vs--~g~~~~~~~~~~~~~~~~~~~~ik~~~~ipVi~~G~i~~----~~~a~~~l~~g~~D  300 (337)
T PRK13523        227 QDYVQYAKWMKEQGVDLIDVS--SGAVVPARIDVYPGYQVPFAEHIREHANIATGAVGLITS----GAQAEEILQNNRAD  300 (337)
T ss_pred             HHHHHHHHHHHHcCCCEEEeC--CCCCCCCCCCCCccccHHHHHHHHhhcCCcEEEeCCCCC----HHHHHHHHHcCCCC
Confidence            999999999999999999883  3431       1222345677777766432234443344    35566778877 66


Q ss_pred             EE
Q 015894          320 TV  321 (398)
Q Consensus       320 ~V  321 (398)
                      .|
T Consensus       301 ~V  302 (337)
T PRK13523        301 LI  302 (337)
T ss_pred             hH
Confidence            54

>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4

Probab=93.95  E-value=2  Score=43.55  Aligned_cols=137  Identities=16%  Similarity=0.069  Sum_probs=79.4

Q ss_pred             HHHHHcCCCEEEEecc--------CchHH--HhhhcCCCHHHHHHHHHHHHHHHHhC-C----C--cEEEEEeeeecCCC
Q 015894          179 EAAVAAGAKEVAIFAS--------ASESF--SKSNINCTIEDSLIRYRDVALAAREL-S----I--PVRGYLSCVVGCPV  241 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~--------~Sd~~--~~~~~~~s~~~~l~~~~~~v~~ak~~-G----~--~v~~~l~~~fg~~~  241 (398)
                      ++|.++|.|.|.|...        +|+..  +...+|-+.++-.+.+.++++.+|+. |    .  .|..-++..-  ..
T Consensus       151 ~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~R~D~yGGslenR~r~~~eii~~vr~~vg~~~~~~~~v~~R~s~~~--~~  228 (353)
T cd04735         151 RRAIEAGFDGVEIHGANGYLIQQFFSPHSNRRTDEWGGSLENRMRFPLAVVKAVQEVIDKHADKDFILGYRFSPEE--PE  228 (353)
T ss_pred             HHHHHcCCCEEEEccccchHHHHhcCCccCCCCcccCCcHHHHHHHHHHHHHHHHHHhccccCCCceEEEEECccc--cc
Confidence            4667899999988642        34433  33455667787777788888887764 4    2  3333333210  01


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCEEEEccCc----CcCCHHHHHHHHHHHHhhC-CCCeEEEEeCCccchHHHHHHHHHHh
Q 015894          242 EGMVPPSKVAYVSKQLYDMGCSEISLGDTI----GVGTPGTVIPMLEAVLDAV-PVDKLAVHFHDTYGQALSNILASLQM  316 (398)
Q Consensus       242 ~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~----G~~~P~~v~~lv~~l~~~~-p~~~l~~H~Hnd~GlA~ANalaAl~a  316 (398)
                      .+-.++++..++++.+.++|+|.|.+.-..    ....|..-...++.+++.+ +.+||-.-+--+   -...+..+++.
T Consensus       229 ~~g~~~ee~~~i~~~L~~~GvD~I~Vs~g~~~~~~~~~~~~~~~~~~~ik~~~~~~iPVi~~Ggi~---t~e~ae~~l~~  305 (353)
T cd04735         229 EPGIRMEDTLALVDKLADKGLDYLHISLWDFDRKSRRGRDDNQTIMELVKERIAGRLPLIAVGSIN---TPDDALEALET  305 (353)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCEEEeccCccccccccCCcchHHHHHHHHHHhCCCCCEEEECCCC---CHHHHHHHHHc
Confidence            223567888999999999999999884311    0011111234455566655 244555543321   13445566666


Q ss_pred             CCCE
Q 015894          317 GIST  320 (398)
Q Consensus       317 Ga~~  320 (398)
                      |++.
T Consensus       306 gaD~  309 (353)
T cd04735         306 GADL  309 (353)
T ss_pred             CCCh
Confidence            7664

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage

Probab=93.94  E-value=2.9  Score=40.30  Aligned_cols=189  Identities=16%  Similarity=0.227  Sum_probs=108.3

Q ss_pred             HHHHHHhcCCCEEEEecCCC--CCcccC--CCCHHHHHHHHHhc-cCCcEEEEe--C----CH----hhHHHHHHcCCCE
Q 015894          124 LIKLLVSSGLAVVEATSFVS--PKWVPQ--LADAKDVMAAIQNV-EGARFPVLT--P----NL----KGFEAAVAAGAKE  188 (398)
Q Consensus       124 ia~~L~~aGv~~IEvG~~~~--~~~~p~--~~D~~~v~~~i~~~-~~~~l~~l~--~----n~----~~ie~a~~~Gv~~  188 (398)
                      -++.+.++|++.|=+|....  ....|.  +-+.+++...++.+ +.+.+...+  +    +.    +.+++..+.|+..
T Consensus        21 sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~~~Pv~~D~~~G~g~~~~~~~~v~~~~~~G~~g  100 (243)
T cd00377          21 SARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAVDLPVIADADTGYGNALNVARTVRELEEAGAAG  100 (243)
T ss_pred             HHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhccCCEEEEcCCCCCCHHHHHHHHHHHHHcCCEE
Confidence            46778888999999985421  112232  23556777777654 223333332  2    22    2356677899999


Q ss_pred             EEEeccCchHHH---hhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE
Q 015894          189 VAIFASASESFS---KSNINCTIEDSLIRYRDVALAAREL-SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE  264 (398)
Q Consensus       189 v~i~~~~Sd~~~---~~~~~~s~~~~l~~~~~~v~~ak~~-G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~  264 (398)
                      |.+-....+-..   ..+.-.+.++..++++.+++.+++. .+.+.+- +.++   ..+....++..+-++...++|||.
T Consensus       101 v~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiAR-TDa~---~~~~~~~~eai~Ra~ay~~AGAD~  176 (243)
T cd00377         101 IHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIAR-TDAL---LAGEEGLDEAIERAKAYAEAGADG  176 (243)
T ss_pred             EEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEE-cCch---hccCCCHHHHHHHHHHHHHcCCCE
Confidence            999766543210   0112347899999988777776663 2222110 0011   011145788888899999999999


Q ss_pred             EEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccc
Q 015894          265 ISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVS  326 (398)
Q Consensus       265 I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~  326 (398)
                      +.+.   |..+++++..+.+.    .+ .|+-+.......  .-+.-.--+.|+++|-....
T Consensus       177 v~v~---~~~~~~~~~~~~~~----~~-~Pl~~~~~~~~~--~~~~~~l~~lG~~~v~~~~~  228 (243)
T cd00377         177 IFVE---GLKDPEEIRAFAEA----PD-VPLNVNMTPGGN--LLTVAELAELGVRRVSYGLA  228 (243)
T ss_pred             EEeC---CCCCHHHHHHHHhc----CC-CCEEEEecCCCC--CCCHHHHHHCCCeEEEEChH
Confidence            9885   33366665555444    33 467666544432  12233334568887765444

Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to

>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit

Probab=93.90  E-value=0.52  Score=47.54  Aligned_cols=77  Identities=17%  Similarity=0.286  Sum_probs=60.8

Q ss_pred             CCCHHHHHHHHHHHHhCCCCEEEEccC-cCcCCHHHHHHHHHHHHhhCCCCeEEEE---------eCCccchHHHHHHHH
Q 015894          244 MVPPSKVAYVSKQLYDMGCSEISLGDT-IGVGTPGTVIPMLEAVLDAVPVDKLAVH---------FHDTYGQALSNILAS  313 (398)
Q Consensus       244 r~~~~~l~~~a~~l~~~Gad~I~L~DT-~G~~~P~~v~~lv~~l~~~~p~~~l~~H---------~Hnd~GlA~ANalaA  313 (398)
                      +.+++.+.+.++.+.+.|+++|.|.+- .-...+..+.++++.+++.+|+  +.+|         .|.+.|+-....+..
T Consensus        69 ~ls~eeI~e~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~i~~~Ik~~~~~--i~~~~~t~~ei~~~~~~~g~~~~e~l~~  146 (343)
T TIGR03551        69 LLSLEEIAERAAEAWKAGATEVCIQGGIHPDLDGDFYLDILRAVKEEVPG--MHIHAFSPMEVYYGARNSGLSVEEALKR  146 (343)
T ss_pred             cCCHHHHHHHHHHHHHCCCCEEEEEeCCCCCCCHHHHHHHHHHHHHHCCC--ceEEecCHHHHHHHHHHcCCCHHHHHHH
Confidence            468999999999999999999999932 2234667789999999998886  4444         466788877777777


Q ss_pred             H-HhCCCEEe
Q 015894          314 L-QMGISTVD  322 (398)
Q Consensus       314 l-~aGa~~VD  322 (398)
                      + +||++.+.
T Consensus       147 LkeAGl~~i~  156 (343)
T TIGR03551       147 LKEAGLDSMP  156 (343)
T ss_pred             HHHhCccccc
Confidence            6 48999886

This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.

>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme

Probab=93.89  E-value=3.6  Score=42.47  Aligned_cols=143  Identities=15%  Similarity=0.204  Sum_probs=88.0

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecC---C-CCCcccCCCCHHHHHHHHHhccCC---cEEEEeCC---HhhHHHHHHc
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSF---V-SPKWVPQLADAKDVMAAIQNVEGA---RFPVLTPN---LKGFEAAVAA  184 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~---~-~~~~~p~~~D~~~v~~~i~~~~~~---~l~~l~~n---~~~ie~a~~~  184 (398)
                      ..+.++.++-++.|.+.|+..|-+...   . ..++ +......++++.+.+.++.   ++..+-+.   .+-++...++
T Consensus       166 ~r~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~~d~-~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~m~~~  244 (414)
T TIGR01579       166 SVPMEAILKQVKILVAKGYKEIVLTGVNLGSYGDDL-KNGTSLAKLLEQILQIPGIKRIRLSSIDPEDIDEELLEAIASE  244 (414)
T ss_pred             cCCHHHHHHHHHHHHHCCCceEEEeeEccchhccCC-CCCCcHHHHHHHHhcCCCCcEEEEeCCChhhCCHHHHHHHHhc
Confidence            468888888888999999998876421   1 1111 0012345666666655543   22222222   2335666666


Q ss_pred             C--CCEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHh--CCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHh
Q 015894          185 G--AKEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAARE--LSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYD  259 (398)
Q Consensus       185 G--v~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~--~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~  259 (398)
                      |  ...+.+-+ +.|+--++ .+++..  ..+.+.++++.+++  .|+.+.++++  +|.|.+   +++.+.+.++.+.+
T Consensus       245 ~~~~~~l~lglESgs~~vLk-~m~R~~--~~~~~~~~v~~l~~~~~gi~i~~~~I--vG~PgE---T~ed~~~tl~~i~~  316 (414)
T TIGR01579       245 KRLCPHLHLSLQSGSDRVLK-RMRRKY--TRDDFLKLVNKLRSVRPDYAFGTDII--VGFPGE---SEEDFQETLRMVKE  316 (414)
T ss_pred             CccCCCeEECCCcCChHHHH-hcCCCC--CHHHHHHHHHHHHHhCCCCeeeeeEE--EECCCC---CHHHHHHHHHHHHh
Confidence            6  56677643 44444333 355432  33556777888888  7888887776  677765   57788888888888


Q ss_pred             CCCCEEE
Q 015894          260 MGCSEIS  266 (398)
Q Consensus       260 ~Gad~I~  266 (398)
                      .+.+.+.
T Consensus       317 ~~~~~~~  323 (414)
T TIGR01579       317 IEFSHLH  323 (414)
T ss_pred             CCCCEEE
Confidence            8887654

This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.

>cd04732 HisA HisA

Probab=93.85  E-value=5.8  Score=37.21  Aligned_cols=182  Identities=15%  Similarity=0.072  Sum_probs=96.3

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEE--eCCHhhHHHHHHcCCCEEEEeccC
Q 015894          118 AVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVL--TPNLKGFEAAVAAGAKEVAIFASA  195 (398)
Q Consensus       118 ~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l--~~n~~~ie~a~~~Gv~~v~i~~~~  195 (398)
                      ..+-+++++.+.+.|++.+-+--...-  ........++...+++.-+..+.+-  .++.++++.+++.|++.|.+-...
T Consensus        28 ~~dp~~~a~~~~~~g~d~l~v~dl~~~--~~~~~~~~~~i~~i~~~~~~pv~~~GgI~~~e~~~~~~~~Gad~vvigs~~  105 (234)
T cd04732          28 SDDPVEVAKKWEEAGAKWLHVVDLDGA--KGGEPVNLELIEEIVKAVGIPVQVGGGIRSLEDIERLLDLGVSRVIIGTAA  105 (234)
T ss_pred             CCCHHHHHHHHHHcCCCEEEEECCCcc--ccCCCCCHHHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEECchH
Confidence            346688999999999998888522110  0001112344444543334444443  367889999999999988653221


Q ss_pred             chHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEeeeecC--CCCC-CCCHHHHHHHHHHHHhCCCCEEEEccC-
Q 015894          196 SESFSKSNINCTIEDSLIRYRDVALAARELSI-PVRGYLSCVVGC--PVEG-MVPPSKVAYVSKQLYDMGCSEISLGDT-  270 (398)
Q Consensus       196 Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~-~v~~~l~~~fg~--~~~~-r~~~~~l~~~a~~l~~~Gad~I~L~DT-  270 (398)
                         .          +..+.+   .+.+++.|. .+.+.+-.--+.  .... ..+.....++++.+.+.|++.|.+-|. 
T Consensus       106 ---l----------~dp~~~---~~i~~~~g~~~i~~sid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ga~~iii~~~~  169 (234)
T cd04732         106 ---V----------KNPELV---KELLKEYGGERIVVGLDAKDGKVATKGWLETSEVSLEELAKRFEELGVKAIIYTDIS  169 (234)
T ss_pred             ---H----------hChHHH---HHHHHHcCCceEEEEEEeeCCEEEECCCeeecCCCHHHHHHHHHHcCCCEEEEEeec
Confidence               1          111222   233344554 333222210000  0000 112334557788889999999877764 


Q ss_pred             -cCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894          271 -IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD  322 (398)
Q Consensus       271 -~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD  322 (398)
                       .|.... .-.++++.+++..+ +|+-.-+.-..   ..-...++..||+.|=
T Consensus       170 ~~g~~~g-~~~~~i~~i~~~~~-ipvi~~GGi~~---~~di~~~~~~Ga~gv~  217 (234)
T cd04732         170 RDGTLSG-PNFELYKELAAATG-IPVIASGGVSS---LDDIKALKELGVAGVI  217 (234)
T ss_pred             CCCccCC-CCHHHHHHHHHhcC-CCEEEecCCCC---HHHHHHHHHCCCCEEE
Confidence             555444 22567777777654 35555442221   1224455556887553

Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.

>PRK13399 fructose-1,6-bisphosphate aldolase; Provisional

Probab=93.80  E-value=0.72  Score=46.87  Aligned_cols=102  Identities=12%  Similarity=0.121  Sum_probs=75.2

Q ss_pred             HHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEccC-cCcCCHHHHHHHHHHHHhhCC
Q 015894          214 RYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGDT-IGVGTPGTVIPMLEAVLDAVP  291 (398)
Q Consensus       214 ~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~DT-~G~~~P~~v~~lv~~l~~~~p  291 (398)
                      .++++.+.|++.|+-|-+ +.+         ++.+.+..+++.+.+.+... |.+... ...+....+..++..+.+..+
T Consensus         5 ~~k~lL~~A~~~~yaV~A-fN~---------~n~e~~~avi~AAEe~~sPvIlq~s~~~~~~~g~~~~~~~v~~~ae~~~   74 (347)
T PRK13399          5 TLRQLLDHAAENGYGVPA-FNV---------NNMEQILAIMEAAEATDSPVILQASRGARKYAGDAMLRHMVLAAAEMYP   74 (347)
T ss_pred             cHHHHHHHHHHCCceEEE-EEe---------CCHHHHHHHHHHHHHhCCCEEEECCcchhhhCCHHHHHHHHHHHHHhcC
Confidence            356778899999997742 321         46789999999999999875 444432 233445668888888888776


Q ss_pred             CCeEEEEeCCccchHHHHHHHHHHhCCC--EEeecccc
Q 015894          292 VDKLAVHFHDTYGQALSNILASLQMGIS--TVDSSVSG  327 (398)
Q Consensus       292 ~~~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~G  327 (398)
                      .+|+.+|  =|.|.-...+..|+++|.+  +||+|-..
T Consensus        75 ~VPVaLH--LDHg~~~e~i~~Ai~~GFtSVMiDgS~l~  110 (347)
T PRK13399         75 DIPICLH--QDHGNSPATCQSAIRSGFTSVMMDGSLLA  110 (347)
T ss_pred             CCcEEEE--CCCCCCHHHHHHHHhcCCCEEEEeCCCCC
Confidence            5577765  4777778889999999998  67999875

>COG2513 PrpB PEP phosphonomutase and related enzymes [Carbohydrate transport and metabolism]

Probab=93.76  E-value=3.1  Score=41.13  Aligned_cols=136  Identities=18%  Similarity=0.254  Sum_probs=91.1

Q ss_pred             hhHHHHHHcCCCEEEEe-ccCchHHHhhhcC-CCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHH
Q 015894          176 KGFEAAVAAGAKEVAIF-ASASESFSKSNIN-CTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYV  253 (398)
Q Consensus       176 ~~ie~a~~~Gv~~v~i~-~~~Sd~~~~~~~~-~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~  253 (398)
                      -....+.+.|.+-+.+. .+++...--.-++ .|.++.++.++++++.   -.++|.+.+-.-||       ++..+...
T Consensus        29 ~sA~la~~aGF~al~~sg~~vA~slG~pD~~~~t~~e~~~~vrrI~~a---~~lPv~vD~dtGfG-------~~~nvart   98 (289)
T COG2513          29 GSALLAERAGFKALYLSGAGVAASLGLPDLGITTLDEVLADARRITDA---VDLPVLVDIDTGFG-------EALNVART   98 (289)
T ss_pred             HHHHHHHHcCCeEEEeccHHHHHhcCCCccccccHHHHHHHHHHHHhh---cCCceEEeccCCCC-------cHHHHHHH
Confidence            34456677887766652 1111111000112 2577788777666553   47777665553332       47888899


Q ss_pred             HHHHHhCCCCEEEEccCcCc-----------CCHHHHHHHHHHHHhhCCCCeEE------EEeCCccchHHHHHHHHHHh
Q 015894          254 SKQLYDMGCSEISLGDTIGV-----------GTPGTVIPMLEAVLDAVPVDKLA------VHFHDTYGQALSNILASLQM  316 (398)
Q Consensus       254 a~~l~~~Gad~I~L~DT~G~-----------~~P~~v~~lv~~l~~~~p~~~l~------~H~Hnd~GlA~ANalaAl~a  316 (398)
                      ++++.++|+-.|.|-|.++-           ..+.++.+.|++.++.-++..+-      ...+.-+.-|+.-+.+-++|
T Consensus        99 V~~~~~aG~agi~iEDq~~pk~cgh~~gk~l~~~~e~v~rIkAa~~a~~~~~fvi~ARTda~~~~~ld~AI~Ra~AY~eA  178 (289)
T COG2513          99 VRELEQAGAAGIHIEDQVGPKRCGHLPGKELVSIDEMVDRIKAAVEARRDPDFVIIARTDALLVEGLDDAIERAQAYVEA  178 (289)
T ss_pred             HHHHHHcCcceeeeeecccchhcCCCCCCCcCCHHHHHHHHHHHHHhccCCCeEEEeehHHHHhccHHHHHHHHHHHHHc
Confidence            99999999999999999984           55688888888888776543332      24444477889999999999


Q ss_pred             CCCEE
Q 015894          317 GISTV  321 (398)
Q Consensus       317 Ga~~V  321 (398)
                      |||.|
T Consensus       179 GAD~i  183 (289)
T COG2513         179 GADAI  183 (289)
T ss_pred             CCcEE
Confidence            99976

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=93.75  E-value=0.89  Score=47.18  Aligned_cols=72  Identities=15%  Similarity=0.205  Sum_probs=55.3

Q ss_pred             HHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCC
Q 015894          250 VAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLG  329 (398)
Q Consensus       250 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlG  329 (398)
                      ..+.++.+.++|+|.|.| |+.. ..+..+.++++.+++.+|+.+|-+..=-+    ...+..++++||+.|-+   |+|
T Consensus       154 ~~~~v~~lv~aGvDvI~i-D~a~-g~~~~~~~~v~~ik~~~p~~~vi~g~V~T----~e~a~~l~~aGaD~I~v---G~g  224 (404)
T PRK06843        154 TIERVEELVKAHVDILVI-DSAH-GHSTRIIELVKKIKTKYPNLDLIAGNIVT----KEAALDLISVGADCLKV---GIG  224 (404)
T ss_pred             HHHHHHHHHhcCCCEEEE-ECCC-CCChhHHHHHHHHHhhCCCCcEEEEecCC----HHHHHHHHHcCCCEEEE---CCC
Confidence            456688889999999998 6665 45789999999999999986665543333    35667888999999984   655


Q ss_pred             C
Q 015894          330 G  330 (398)
Q Consensus       330 e  330 (398)
                      .
T Consensus       225 ~  225 (404)
T PRK06843        225 P  225 (404)
T ss_pred             C
Confidence            4

>TIGR01858 tag_bisphos_ald class II aldolase, tagatose bisphosphate family

Probab=93.75  E-value=0.97  Score=44.68  Aligned_cols=118  Identities=14%  Similarity=0.141  Sum_probs=82.6

Q ss_pred             HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEccC-cCcCCHHHHHHHHHHHHhhCCC
Q 015894          215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGDT-IGVGTPGTVIPMLEAVLDAVPV  292 (398)
Q Consensus       215 ~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~DT-~G~~~P~~v~~lv~~l~~~~p~  292 (398)
                      ++++.+.|++.|+-|-+ +.+         .+.+.+..+++.+.+.+... |.+... ...+....+..++..+.+... 
T Consensus         4 ~k~ll~~A~~~~yAV~A-fN~---------~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~-   72 (282)
T TIGR01858         4 TKYMLQDAQAGGYAVPA-FNI---------HNLETIQAVVETAAEMRSPVILAGTPGTFKHAGTEYIVALCSAASTTYN-   72 (282)
T ss_pred             HHHHHHHHHHcCCeEEE-EEe---------CCHHHHHHHHHHHHHhCCCEEEEeCccHHhhCCHHHHHHHHHHHHHHCC-
Confidence            45778889999998742 221         46788999999999999874 444432 233445667788888887775 


Q ss_pred             CeEEEEeCCccchHHHHHHHHHHhCCC--EEeeccccCCCCCCCCCCCCCc-cHHHHHHHHHhCC
Q 015894          293 DKLAVHFHDTYGQALSNILASLQMGIS--TVDSSVSGLGGCPYAKGASGNV-ATEDVVYMLNGLG  354 (398)
Q Consensus       293 ~~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGecp~a~graGNa-~lE~vv~~L~~~G  354 (398)
                      +|+.+|.  |.|.-...+..|+++|.+  ++|+|-..+-+         |. -|-+++.+.+..|
T Consensus        73 VPValHL--DHg~~~e~i~~ai~~GFtSVM~DgS~lp~ee---------Ni~~T~~vv~~Ah~~g  126 (282)
T TIGR01858        73 MPLALHL--DHHESLDDIRQKVHAGVRSAMIDGSHFPFAQ---------NVKLVKEVVDFCHRQD  126 (282)
T ss_pred             CCEEEEC--CCCCCHHHHHHHHHcCCCEEeecCCCCCHHH---------HHHHHHHHHHHHHHcC
Confidence            4677654  667778889999999998  66999876655         54 4555666555333

This model describes tagatose-1,6-bisphosphate aldolases, and perhaps other closely related class II aldolases. This tetrameric, Zn2+-dependent enzyme is related to the class II fructose bisphosphate aldolase; fructose 1,6-bisphosphate and tagatose 1,6 bisphosphate differ only in chirality at C4.

>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed

Probab=93.72  E-value=5.6  Score=40.50  Aligned_cols=239  Identities=21%  Similarity=0.202  Sum_probs=128.7

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe-CCHhhHHHHHHcCCCEEEEeccC
Q 015894          117 PAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT-PNLKGFEAAVAAGAKEVAIFASA  195 (398)
Q Consensus       117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~~~  195 (398)
                      +.+..++-+..|.++|.+.+-+..+.       +.+++.+ ..+++..++.+.+=. .+.+-.-.|++.|++.+||=-. 
T Consensus        40 Dv~atv~Qi~~L~~aGceiVRvav~~-------~~~a~al-~~I~~~~~iPlvADIHFd~~lAl~a~~~G~~~iRINPG-  110 (360)
T PRK00366         40 DVEATVAQIKRLARAGCEIVRVAVPD-------MEAAAAL-PEIKKQLPVPLVADIHFDYRLALAAAEAGADALRINPG-  110 (360)
T ss_pred             hHHHHHHHHHHHHHcCCCEEEEccCC-------HHHHHhH-HHHHHcCCCCEEEecCCCHHHHHHHHHhCCCEEEECCC-
Confidence            44555778889999999999998643       2344333 333322233333311 2333334557789999998322 


Q ss_pred             chHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC------CCCCHHHHH----HHHHHHHhCCCCE-
Q 015894          196 SESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE------GMVPPSKVA----YVSKQLYDMGCSE-  264 (398)
Q Consensus       196 Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~------~r~~~~~l~----~~a~~l~~~Gad~-  264 (398)
                             |++.    .-++++++++.||++|+.++..+.  .|+-..      +..+++-+.    +.++.+.++|.+. 
T Consensus       111 -------Nig~----~~~~v~~vv~~ak~~~ipIRIGvN--~GSL~~~~~~~yg~~t~eamveSAl~~~~~le~~~f~~i  177 (360)
T PRK00366        111 -------NIGK----RDERVREVVEAAKDYGIPIRIGVN--AGSLEKDLLEKYGEPTPEALVESALRHAKILEELGFDDI  177 (360)
T ss_pred             -------CCCc----hHHHHHHHHHHHHHCCCCEEEecC--CccChHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcE
Confidence                   3321    135667889999999999996665  343211      112344333    3566777888874 


Q ss_pred             -EEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEe--CCccchHH---HHHHHH-HHhCC-CEEeeccccCCCCCCCCC
Q 015894          265 -ISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHF--HDTYGQAL---SNILAS-LQMGI-STVDSSVSGLGGCPYAKG  336 (398)
Q Consensus       265 -I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~--Hnd~GlA~---ANalaA-l~aGa-~~VD~Sv~GlGecp~a~g  336 (398)
                       |+++.|    .+..+-+-.+.+.+..+ -|||+=.  --+.-.++   +-.+.+ +.-|+ |.|-+|+.+         
T Consensus       178 viS~KsS----~v~~~i~ayrlla~~~d-yPLHlGvTEAG~~~~G~iKSa~gig~LL~~GIGDTiRVSLt~---------  243 (360)
T PRK00366        178 KISVKAS----DVQDLIAAYRLLAKRCD-YPLHLGVTEAGMGFKGTVKSAAGLGALLQEGIGDTIRVSLTA---------  243 (360)
T ss_pred             EEEEEcC----CHHHHHHHHHHHHhcCC-CCceecccCCCCCCCceehhHHHHHHHHHhcCCCeEEEeCCC---------
Confidence             556654    34443333344434332 2232211  11111111   122222 23564 567777652         


Q ss_pred             CCCCccHHHHHHHH---HhCCCC--------------CccChHHHHHHHHHHHHHhCCCCCCCcccccccccccccCC
Q 015894          337 ASGNVATEDVVYML---NGLGVR--------------TNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANASK  397 (398)
Q Consensus       337 raGNa~lE~vv~~L---~~~Gi~--------------t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~f~~~~s~  397 (398)
                         . |.||+-...   +.+|+.              +.+|+..+  +.+.-++..+.+.|-+.++-|.-+..|=|++
T Consensus       244 ---~-P~~EV~va~~IL~slglr~~g~~IisCPgCgR~~~D~~~l--a~~vee~~~~~~~PlkIAVmGC~VNgpGEa~  315 (360)
T PRK00366        244 ---D-PVEEVKVGQEILQSLGLRSRGPEVISCPTCGRTEFDVIQE--LAEVEQRLEHIKMPLKVAVMGCVVNGPGEAK  315 (360)
T ss_pred             ---C-CHHHHHHHHHHHHHcCCccCCCeEEECCCCCCCcccHHHH--HHHHHHHhcCCCCCcEEEEeCCCCCCCCchh
Confidence               2 467776543   334442              22343332  2333445668889988899998776666654

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=93.72  E-value=2.1  Score=41.78  Aligned_cols=78  Identities=18%  Similarity=0.223  Sum_probs=55.4

Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEc----cCcC----cCCHHHHHHHHHHHHhhCCCCeEEEEeCCccc--hHHHHHHHHHH
Q 015894          246 PPSKVAYVSKQLYDMGCSEISLG----DTIG----VGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYG--QALSNILASLQ  315 (398)
Q Consensus       246 ~~~~l~~~a~~l~~~Gad~I~L~----DT~G----~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~G--lA~ANalaAl~  315 (398)
                      +++.+.+.++.+.++|+|.|.|-    .+.+    .-.|..+.++++++++.+ +.||.+-.=-...  -...-+.++.+
T Consensus       109 ~~~~~~~~a~~~~~~G~d~ielN~~cP~~~~~~~~~~~~~~~~eiv~~vr~~~-~~pv~vKl~~~~~~~~~~~~a~~l~~  187 (289)
T cd02810         109 SKEDYVELARKIERAGAKALELNLSCPNVGGGRQLGQDPEAVANLLKAVKAAV-DIPLLVKLSPYFDLEDIVELAKAAER  187 (289)
T ss_pred             CHHHHHHHHHHHHHhCCCEEEEEcCCCCCCCCcccccCHHHHHHHHHHHHHcc-CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence            67899999999999999987652    2111    236889999999999876 3456665443333  34455556778


Q ss_pred             hCCCEEeec
Q 015894          316 MGISTVDSS  324 (398)
Q Consensus       316 aGa~~VD~S  324 (398)
                      +||+.|.++
T Consensus       188 ~Gad~i~~~  196 (289)
T cd02810         188 AGADGLTAI  196 (289)
T ss_pred             cCCCEEEEE
Confidence            999988765

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>PRK09249 coproporphyrinogen III oxidase; Provisional

Probab=93.69  E-value=4.4  Score=42.45  Aligned_cols=109  Identities=16%  Similarity=0.207  Sum_probs=70.4

Q ss_pred             HHHHHHHHHhc----cCCcEEEEeC----CHhhHHHHHHcCCCEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 015894          153 AKDVMAAIQNV----EGARFPVLTP----NLKGFEAAVAAGAKEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAAR  223 (398)
Q Consensus       153 ~~~v~~~i~~~----~~~~l~~l~~----n~~~ie~a~~~Gv~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak  223 (398)
                      .+++++.+++.    ++..+++-++    +.+-++...++|+.+|.+-+ +.++-. -..+|+.  ...+.+.++++.++
T Consensus       121 l~~ll~~l~~~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~~~~~-L~~l~r~--~~~~~~~~ai~~l~  197 (453)
T PRK09249        121 LRRLMALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDFDPEV-QKAVNRI--QPFEFTFALVEAAR  197 (453)
T ss_pred             HHHHHHHHHHhCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCCCHHH-HHHhCCC--CCHHHHHHHHHHHH
Confidence            34555555432    2345554442    34668888899999988854 334332 2334432  23445567788899


Q ss_pred             hCCC-cEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcc
Q 015894          224 ELSI-PVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGD  269 (398)
Q Consensus       224 ~~G~-~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~D  269 (398)
                      +.|+ .+.+.++  +|.|..   +.+.+.+.++.+.+.|++.|.+-.
T Consensus       198 ~~G~~~v~~dli--~GlPgq---t~e~~~~~l~~~~~l~~~~i~~y~  239 (453)
T PRK09249        198 ELGFTSINIDLI--YGLPKQ---TPESFARTLEKVLELRPDRLAVFN  239 (453)
T ss_pred             HcCCCcEEEEEE--ccCCCC---CHHHHHHHHHHHHhcCCCEEEEcc
Confidence            9998 5666665  666654   678888889999999999887764

>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed

Probab=93.67  E-value=9  Score=38.85  Aligned_cols=181  Identities=13%  Similarity=0.087  Sum_probs=107.9

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEecCC---CCCcccCCCCHHHHHHHHHh---ccCCcEEEEeCCHhhHHHHHHcCCCEEE
Q 015894          117 PAVVKVELIKLLVSSGLAVVEATSFV---SPKWVPQLADAKDVMAAIQN---VEGARFPVLTPNLKGFEAAVAAGAKEVA  190 (398)
Q Consensus       117 ~~~~k~~ia~~L~~aGv~~IEvG~~~---~~~~~p~~~D~~~v~~~i~~---~~~~~l~~l~~n~~~ie~a~~~Gv~~v~  190 (398)
                      +.++.+++|+.|.++|...+-.+.|-   +|...-.+  .++=+..+++   -.+..+..=..+..+++.+.+. +|.+.
T Consensus       105 s~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf~G~--g~~gL~~L~~~~~~~Gl~v~tev~d~~~~~~l~~~-vd~lq  181 (335)
T PRK08673        105 SEEQILEIARAVKEAGAQILRGGAFKPRTSPYSFQGL--GEEGLKLLAEAREETGLPIVTEVMDPRDVELVAEY-VDILQ  181 (335)
T ss_pred             CHHHHHHHHHHHHHhchhhccCcEecCCCCCcccccc--cHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHHHh-CCeEE
Confidence            78888999999999999977766542   22111111  1233334432   2344433333577788888877 88888


Q ss_pred             EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccC
Q 015894          191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDT  270 (398)
Q Consensus       191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT  270 (398)
                      |-...          +..       .+.++++-+.|.+|-  +..      .--.+++++...++.+...|-+.+.|+.-
T Consensus       182 IgAr~----------~~N-------~~LL~~va~~~kPVi--Lk~------G~~~ti~E~l~A~e~i~~~GN~~viL~er  236 (335)
T PRK08673        182 IGARN----------MQN-------FDLLKEVGKTNKPVL--LKR------GMSATIEEWLMAAEYILAEGNPNVILCER  236 (335)
T ss_pred             ECccc----------ccC-------HHHHHHHHcCCCcEE--EeC------CCCCCHHHHHHHHHHHHHcCCCeEEEEEC
Confidence            74331          111       134455567788875  331      11237899999999999999988888873


Q ss_pred             --cCc--CCHHHHH-HHHHHHHhhCCCCeE-EEEeCC--ccchHHHHHHHHHHhCCC--EEeeccc
Q 015894          271 --IGV--GTPGTVI-PMLEAVLDAVPVDKL-AVHFHD--TYGQALSNILASLQMGIS--TVDSSVS  326 (398)
Q Consensus       271 --~G~--~~P~~v~-~lv~~l~~~~p~~~l-~~H~Hn--d~GlA~ANalaAl~aGa~--~VD~Sv~  326 (398)
                        ...  .++..+. ..+..+++.+. .|+ ..=.|-  ..-+...-+++|+.+||+  +|+.-..
T Consensus       237 G~~tf~~~~~~~ldl~ai~~lk~~~~-lPVi~d~sH~~G~~~~v~~~a~AAvA~GAdGliIE~H~~  301 (335)
T PRK08673        237 GIRTFETATRNTLDLSAVPVIKKLTH-LPVIVDPSHATGKRDLVEPLALAAVAAGADGLIVEVHPD  301 (335)
T ss_pred             CCCCCCCcChhhhhHHHHHHHHHhcC-CCEEEeCCCCCccccchHHHHHHHHHhCCCEEEEEecCC
Confidence              122  2222222 23445555443 455 443333  334556789999999999  7765443

>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional

Probab=93.66  E-value=1.2  Score=44.16  Aligned_cols=126  Identities=16%  Similarity=0.118  Sum_probs=79.2

Q ss_pred             EEeCCHhhHHHHHHcCCCEEEEeccC-chHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHH
Q 015894          170 VLTPNLKGFEAAVAAGAKEVAIFASA-SESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPS  248 (398)
Q Consensus       170 ~l~~n~~~ie~a~~~Gv~~v~i~~~~-Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~  248 (398)
                      +=+-|.+..+.|-++|.+.|.+.... ||. .+.+ |..+-...+.+.. ++.  .-.++|.+            ..-..
T Consensus        22 mdv~~~~~a~iae~~g~~~v~~~~~~psd~-~~~g-g~~Rm~~p~~I~a-Ik~--~V~iPVig------------k~Rig   84 (293)
T PRK04180         22 MDVVNAEQAKIAEEAGAVAVMALERVPADI-RAAG-GVARMADPKMIEE-IMD--AVSIPVMA------------KARIG   84 (293)
T ss_pred             EEeCCHHHHHHHHHhChHHHHHccCCCchH-hhcC-CeeecCCHHHHHH-HHH--hCCCCeEE------------eehhh
Confidence            33457777788888888877654332 333 2222 3333223333321 221  12566642            11234


Q ss_pred             HHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894          249 KVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       249 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S  324 (398)
                      ++.+ ++.+.++|+|.|   |-....+|  ..+++..+++.| ..++-.-+-|     +..++.++..|+++|-++
T Consensus        85 h~~E-a~~L~~~GvDiI---D~Te~lrp--ad~~~~~~K~~f-~~~fmad~~~-----l~EAlrai~~GadmI~Tt  148 (293)
T PRK04180         85 HFVE-AQILEALGVDYI---DESEVLTP--ADEEYHIDKWDF-TVPFVCGARN-----LGEALRRIAEGAAMIRTK  148 (293)
T ss_pred             HHHH-HHHHHHcCCCEE---eccCCCCc--hHHHHHHHHHHc-CCCEEccCCC-----HHHHHHHHHCCCCeeecc
Confidence            4444 778999999999   88889999  568999999888 4445444433     567789999999999888

>TIGR00587 nfo apurinic endonuclease (APN1)

Probab=93.62  E-value=6.3  Score=38.31  Aligned_cols=202  Identities=12%  Similarity=0.048  Sum_probs=101.0

Q ss_pred             HHHHHHHHhcCCCEEEEecCCCCCcccCCCC---HHHHHHHHHhc--cCCcEEEEe--------CCH-----------hh
Q 015894          122 VELIKLLVSSGLAVVEATSFVSPKWVPQLAD---AKDVMAAIQNV--EGARFPVLT--------PNL-----------KG  177 (398)
Q Consensus       122 ~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D---~~~v~~~i~~~--~~~~l~~l~--------~n~-----------~~  177 (398)
                      .+.++.+.+.|++.+|+..-....|...+-+   .+.+.+.+.+.  ....+.+.+        ++.           +.
T Consensus        14 ~~a~~~~~~~G~~~~qif~~~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~iNlas~~~~~r~~sv~~~~~~   93 (274)
T TIGR00587        14 QAAYNRAAEIGATAFMFFLKSPRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYLINLASPDEEKEEKSLDVLDEE   93 (274)
T ss_pred             HHHHHHHHHhCCCEEEEEecCccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCeeeecCCCCHHHHHHHHHHHHHH
Confidence            4578889999999999943222223322212   22222322221  111122221        121           12


Q ss_pred             HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894          178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL  257 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l  257 (398)
                      ++.|...|++.|.+..+.-       ...+.+++++++.+.++.+-+....|...+....+.+..--.+++.+.++++.+
T Consensus        94 i~~A~~lga~~vv~H~G~~-------~~~~~e~~~~~~~~~l~~l~~~~~~v~l~lEN~~~~~~~l~~~~~el~~ll~~~  166 (274)
T TIGR00587        94 LKRCELLGIMLYNFHPGSA-------LKCSEEEGLDNLIESLNVVIKETKIVTILLENMAGQGSELGRSFEELAYIIKVI  166 (274)
T ss_pred             HHHHHHcCCCEEEECCCCC-------CCCCHHHHHHHHHHHHHHHHhccCCCEEEEEeCCCCCCccCCCHHHHHHHHHhc
Confidence            4566778888666643311       122556777777766655443222244334322221111124677777766544


Q ss_pred             HhCCCCEEEEccCcCcC--------CHHHHHHHHHHHHhhCC-CCeEEEEeCCccc-hHHHHHHHHHHhCCCEEeecccc
Q 015894          258 YDMGCSEISLGDTIGVG--------TPGTVIPMLEAVLDAVP-VDKLAVHFHDTYG-QALSNILASLQMGISTVDSSVSG  327 (398)
Q Consensus       258 ~~~Gad~I~L~DT~G~~--------~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~G-lA~ANalaAl~aGa~~VD~Sv~G  327 (398)
                      ..  .+.+.+|--+|-+        ++..+.+++..+.+.+. +.-..+|+||+.. .+         .|.+ -+   ..
T Consensus       167 ~~--~~~lg~~lDt~H~~~~g~~~~~~~~~~~~~~~~~~~~g~~~i~~vHl~Ds~~~~g---------~~~d-~H---~~  231 (274)
T TIGR00587       167 VD--KRRIGVCLDTCHFFAAGYDITTKAYFEVVKNEFDVVVGFKYLKAIHLNDSKNVLG---------SRKD-RH---EN  231 (274)
T ss_pred             CC--CCceEEEEEhhhHHhcCCCcCCHHHHHHHHHHHHHhcCHhheeEEEEEcCccccc---------cCcC-CC---CC
Confidence            21  1344443322222        26667777777776653 3346789888742 11         0111 11   12


Q ss_pred             CCCCCCCCCCCCCccHHHHHHHHHhC
Q 015894          328 LGGCPYAKGASGNVATEDVVYMLNGL  353 (398)
Q Consensus       328 lGecp~a~graGNa~lE~vv~~L~~~  353 (398)
                      +        +.|+.+.+.++..|++.
T Consensus       232 i--------G~G~i~~~~~~~~L~~~  249 (274)
T TIGR00587       232 I--------GEGIIGFDAFRLIMDDE  249 (274)
T ss_pred             c--------CCccCCHHHHHHHHcCc
Confidence            2        35788999999999764

All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism

Probab=93.61  E-value=2.5  Score=41.00  Aligned_cols=162  Identities=16%  Similarity=0.172  Sum_probs=93.9

Q ss_pred             HHHHHHHhcCCCEEEEecCC-CCCcccCCCCHHHHHHHHHh-----ccCCcEEEEeCCHhh-H---HHHHHc-CCCEEEE
Q 015894          123 ELIKLLVSSGLAVVEATSFV-SPKWVPQLADAKDVMAAIQN-----VEGARFPVLTPNLKG-F---EAAVAA-GAKEVAI  191 (398)
Q Consensus       123 ~ia~~L~~aGv~~IEvG~~~-~~~~~p~~~D~~~v~~~i~~-----~~~~~l~~l~~n~~~-i---e~a~~~-Gv~~v~i  191 (398)
                      .+.+.+..+|.+.+-+..-- ...   + ...+.+++.++.     +||+   +-|++.++ +   +.+.+. |.+.|.+
T Consensus        24 ~~~~ai~aSg~~ivTva~rR~~~~---~-~~~~~~~~~i~~~~~~~lpNT---aG~~ta~eAv~~a~lare~~~~~~iKl   96 (248)
T cd04728          24 IMKEAIEASGAEIVTVALRRVNIG---D-PGGESFLDLLDKSGYTLLPNT---AGCRTAEEAVRTARLAREALGTDWIKL   96 (248)
T ss_pred             HHHHHHHHhCCCEEEEEEEecccC---C-CCcchHHhhccccCCEECCCC---CCCCCHHHHHHHHHHHHHHhCCCeEEE
Confidence            46778899999998887421 110   0 112234444431     2332   33444332 3   344554 6788888


Q ss_pred             eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC---CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 015894          192 FASASESFSKSNINCTIEDSLIRYRDVALAAREL---SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG  268 (398)
Q Consensus       192 ~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~---G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~  268 (398)
                      -+--.+.+           .+....+.++.|+++   |+.|.+|..          -|+    ..++++.++|++.| .+
T Consensus        97 EVi~d~~~-----------Llpd~~~tv~aa~~L~~~Gf~vlpyc~----------dd~----~~ar~l~~~G~~~v-mP  150 (248)
T cd04728          97 EVIGDDKT-----------LLPDPIETLKAAEILVKEGFTVLPYCT----------DDP----VLAKRLEDAGCAAV-MP  150 (248)
T ss_pred             EEecCccc-----------cccCHHHHHHHHHHHHHCCCEEEEEeC----------CCH----HHHHHHHHcCCCEe-CC
Confidence            66543322           234455667777777   998865433          133    46788889999988 44


Q ss_pred             --cCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894          269 --DTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       269 --DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                        ...|....-.-.++++.+++.. ++++-+-.+=..   ..-+..|++.|++.|
T Consensus       151 lg~pIGsg~Gi~~~~~I~~I~e~~-~vpVI~egGI~t---peda~~AmelGAdgV  201 (248)
T cd04728         151 LGSPIGSGQGLLNPYNLRIIIERA-DVPVIVDAGIGT---PSDAAQAMELGADAV  201 (248)
T ss_pred             CCcCCCCCCCCCCHHHHHHHHHhC-CCcEEEeCCCCC---HHHHHHHHHcCCCEE
Confidence              6666665554467777777763 345544332222   356678889999854

ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).

>PLN02623 pyruvate kinase

Probab=93.60  E-value=8.7  Score=41.72  Aligned_cols=242  Identities=13%  Similarity=0.104  Sum_probs=139.0

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-cCCcEEEEeCCHhhHH---HHHHcCCCEEEE
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-EGARFPVLTPNLKGFE---AAVAAGAKEVAI  191 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~~~~l~~l~~n~~~ie---~a~~~Gv~~v~i  191 (398)
                      ++..++.. ++.-.+.|+|+|=+.|--++      .|..++.+.++.. .++.+.+..-+..+++   .-++ |+|.|.|
T Consensus       276 lTekD~~d-i~f~~~~~vD~ialSFVr~a------~DV~~~r~~l~~~~~~~~iiakIEt~eaVeNldeIl~-g~DgImI  347 (581)
T PLN02623        276 ITEKDWED-IKFGVENKVDFYAVSFVKDA------QVVHELKDYLKSCNADIHVIVKIESADSIPNLHSIIT-ASDGAMV  347 (581)
T ss_pred             CCHHHHHH-HHHHHHcCCCEEEECCCCCH------HHHHHHHHHHHHcCCcceEEEEECCHHHHHhHHHHHH-hCCEEEE
Confidence            56666555 56777999999888763322      3444555555432 2344555555655544   3344 8997766


Q ss_pred             eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEE----eeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 015894          192 FASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYL----SCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL  267 (398)
Q Consensus       192 ~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l----~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L  267 (398)
                      .  -.|.-.+.    ..++.....+++++.|+++|..+.+.-    +|.+ .|..+|   .++.+++ .+...|++.|.|
T Consensus       348 g--rgDLgvel----g~~~v~~~qk~Ii~~~~~~gKpvivaTQMLESMi~-~~~PTR---AEv~Dva-~av~dG~d~vmL  416 (581)
T PLN02623        348 A--RGDLGAEL----PIEEVPLLQEEIIRRCRSMGKPVIVATNMLESMIV-HPTPTR---AEVSDIA-IAVREGADAVML  416 (581)
T ss_pred             C--cchhhhhc----CcHHHHHHHHHHHHHHHHhCCCEEEECchhhhccc-CCCCCc---hhHHHHH-HHHHcCCCEEEe
Confidence            3  33443222    236777778899999999999885321    1111 233333   4555544 355789999888


Q ss_pred             c-cCcCcCCHHHHHHHHHHHHhhC----CCC-e---EEEEe--CCccchHHHHHHHHHHhCCCEEeeccccCCC------
Q 015894          268 G-DTIGVGTPGTVIPMLEAVLDAV----PVD-K---LAVHF--HDTYGQALSNILASLQMGISTVDSSVSGLGG------  330 (398)
Q Consensus       268 ~-DT~G~~~P~~v~~lv~~l~~~~----p~~-~---l~~H~--Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGe------  330 (398)
                      . ||.=.-.|.+..++++.+..+.    +.. .   +.-+.  |-..-+|.+....|-..++.+|=.|-.|--.      
T Consensus       417 s~Eta~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~ia~sA~~~A~~l~a~Ivv~T~sG~tA~~lSr~  496 (581)
T PLN02623        417 SGETAHGKFPLKAVKVMHTVALRTEATLPEGTTPPNLGQAFKNHMSEMFAFHATMMANTLGTSIIVFTRTGFMAILLSHY  496 (581)
T ss_pred             cchhhcCcCHHHHHHHHHHHHHHHHhhcccchhhhhhccccCCChHHHHHHHHHHHHHhcCCcEEEECCCcHHHHHHHhh
Confidence            6 6777778998888888876532    110 0   01111  1123456666677778888888888877532      


Q ss_pred             ---CCCCCCCCCCccHHHHHHHHHh-CCCCC-----ccChHHHHHHHHHHHHHhCCCCC
Q 015894          331 ---CPYAKGASGNVATEDVVYMLNG-LGVRT-----NVDIRKLMIAGDFICKHLGRTSG  380 (398)
Q Consensus       331 ---cp~a~graGNa~lE~vv~~L~~-~Gi~t-----~iDl~~L~~~~~~v~~~~g~~~~  380 (398)
                         ||   - -.-.+-+.+...|.- .|+.+     .-|.+.+.+.+....+..|.--+
T Consensus       497 RP~~p---I-~avT~~~~~aR~L~L~~GV~P~~~~~~~~~e~~i~~a~~~~~~~g~v~~  551 (581)
T PLN02623        497 RPSGT---I-FAFTNEKRIQQRLALYQGVCPIYMQFSDDAEETFARALSLLLNKGMVKE  551 (581)
T ss_pred             CCCCC---E-EEECCCHHHHHHhhcccccEEEecCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence               33   1 112334666666654 36532     12455555555555555565433

>PRK08446 coproporphyrinogen III oxidase; Provisional

Probab=93.56  E-value=3.4  Score=41.81  Aligned_cols=126  Identities=11%  Similarity=0.037  Sum_probs=76.0

Q ss_pred             CCCEEEEecCCCCCcccCCCCHHHHHHHHHhc--cCCcEEEEe-C---CHhhHHHHHHcCCCEEEEec-cCchHHHhhhc
Q 015894          132 GLAVVEATSFVSPKWVPQLADAKDVMAAIQNV--EGARFPVLT-P---NLKGFEAAVAAGAKEVAIFA-SASESFSKSNI  204 (398)
Q Consensus       132 Gv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~--~~~~l~~l~-~---n~~~ie~a~~~Gv~~v~i~~-~~Sd~~~~~~~  204 (398)
                      +++.|-+|-.. |...| ....+++++.++..  ++..+++-+ |   +.+.++...++|+.+|.+-+ +.++.. ...+
T Consensus        51 ~v~~iyfGGGT-Ps~l~-~~~l~~ll~~i~~~~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~~~~~-L~~l  127 (350)
T PRK08446         51 KIESVFIGGGT-PSTVS-AKFYEPIFEIISPYLSKDCEITTEANPNSATKAWLKGMKNLGVNRISFGVQSFNEDK-LKFL  127 (350)
T ss_pred             ceeEEEECCCc-cccCC-HHHHHHHHHHHHHhcCCCceEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHH-HHHc
Confidence            56666665321 21111 01234455555532  345555544 3   34567888899999988854 344433 3334


Q ss_pred             CCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 015894          205 NCTIEDSLIRYRDVALAARELSIP-VRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL  267 (398)
Q Consensus       205 ~~s~~~~l~~~~~~v~~ak~~G~~-v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L  267 (398)
                      |+.  ...+.+.++++.+++.|+. |.+.++  +|.|..   +.+.+.+..+.+.+.|++.|.+
T Consensus       128 gR~--~~~~~~~~ai~~lr~~g~~~v~iDli--~GlPgq---t~~~~~~~l~~~~~l~~~~is~  184 (350)
T PRK08446        128 GRI--HSQKQIIKAIENAKKAGFENISIDLI--YDTPLD---NKKLLKEELKLAKELPINHLSA  184 (350)
T ss_pred             CCC--CCHHHHHHHHHHHHHcCCCEEEEEee--cCCCCC---CHHHHHHHHHHHHhcCCCEEEe
Confidence            542  2244556778899999986 555565  666653   5788888889999999998765

>TIGR02320 PEP_mutase phosphoenolpyruvate phosphomutase

Probab=93.54  E-value=1.8  Score=42.91  Aligned_cols=107  Identities=13%  Similarity=0.015  Sum_probs=76.5

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCc--------------
Q 015894          206 CTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTI--------------  271 (398)
Q Consensus       206 ~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~--------------  271 (398)
                      .+.++.++.++.++..   ..++|.+.       .+.+ -++..+.+.++.+.+.|+..|.|-|..              
T Consensus        61 ~~~~e~~~~~~~I~~a---~~~Pv~~D-------~d~G-g~~~~v~r~V~~l~~aGvaGi~iEDq~~pk~cg~~~~~~~~  129 (285)
T TIGR02320        61 ASWTQRLDVVEFMFDV---TTKPIILD-------GDTG-GNFEHFRRLVRKLERRGVSAVCIEDKLGLKKNSLFGNDVAQ  129 (285)
T ss_pred             CCHHHHHHHHHHHHhh---cCCCEEEe-------cCCC-CCHHHHHHHHHHHHHcCCeEEEEeccCCCccccccCCCCcc
Confidence            3677777776655543   35665421       2445 689999999999999999999998875              


Q ss_pred             CcCCHHHHHHHHHHHHhhC--CCCeEEEE----e-CCccchHHHHHHHHHHhCCCEEee
Q 015894          272 GVGTPGTVIPMLEAVLDAV--PVDKLAVH----F-HDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       272 G~~~P~~v~~lv~~l~~~~--p~~~l~~H----~-Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      .+..+++..+.|++.++.-  ++..|-..    . ...+--|+.-+.++.+||||.|=.
T Consensus       130 ~l~s~ee~~~kI~Aa~~a~~~~~~~IiARTDa~~~~~~~~eAi~Ra~ay~eAGAD~ifv  188 (285)
T TIGR02320       130 PQASVEEFCGKIRAGKDAQTTEDFMIIARVESLILGKGMEDALKRAEAYAEAGADGIMI  188 (285)
T ss_pred             cccCHHHHHHHHHHHHHhccCCCeEEEEecccccccCCHHHHHHHHHHHHHcCCCEEEe
Confidence            3567788888888887652  34444444    2 224557888999999999997755

A closely related enzyme, phosphonopyruvate hydrolase from Variovorax sp. Pal2, is excluded from this model.

>PLN03033 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional

Probab=93.50  E-value=8.6  Score=38.08  Aligned_cols=177  Identities=15%  Similarity=0.120  Sum_probs=107.3

Q ss_pred             CHHHHHHHHHHHHhc----CCCEEEEecCC-----CCCcc--cCCCCHHHHHHHHHhccCCcEEEEeCCHhhHHHHHHcC
Q 015894          117 PAVVKVELIKLLVSS----GLAVVEATSFV-----SPKWV--PQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAG  185 (398)
Q Consensus       117 ~~~~k~~ia~~L~~a----Gv~~IEvG~~~-----~~~~~--p~~~D~~~v~~~i~~~~~~~l~~l~~n~~~ie~a~~~G  185 (398)
                      +.++.+++++.|.++    |++.|-=|+|-     +|...  |.+.+-=++++.+++-.+..+..=+....+++.+.+. 
T Consensus        28 s~e~~~~~A~~lk~~~~~~g~~~i~kgsfkKApRTSp~sFrG~G~eeGL~iL~~vk~~~glpvvTeV~~~~q~~~vae~-  106 (290)
T PLN03033         28 SEEHILRMAKHIKDISTKLGLPLVFKSSFDKANRTSSKSFRGPGMAEGLKILEKVKVAYDLPIVTDVHESSQCEAVGKV-  106 (290)
T ss_pred             CHHHHHHHHHHHHHHHHhCCCcEEEEeeccCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCceEEeeCCHHHHHHHHhh-
Confidence            678889999999886    99999888774     22221  1111222334444433344444334577888888887 


Q ss_pred             CCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE
Q 015894          186 AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEI  265 (398)
Q Consensus       186 v~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I  265 (398)
                      +|.+.|-....                 +--+.++.+.+-|..|.  |-      ..--.+++++...++.+.+.|-+.|
T Consensus       107 ~DilQIgAr~~-----------------rqtdLL~a~~~tgkpV~--lK------kGq~~t~~e~~~aaeki~~~GN~~v  161 (290)
T PLN03033        107 ADIIQIPAFLC-----------------RQTDLLVAAAKTGKIIN--IK------KGQFCAPSVMRNSAEKVRLAGNPNV  161 (290)
T ss_pred             CcEEeeCcHHH-----------------HHHHHHHHHHccCCeEE--eC------CCCCCCHHHHHHHHHHHHHcCCCcE
Confidence            69999853211                 11244556666777764  11      1122579999999999999999999


Q ss_pred             EEcc---CcCcCCH-HHHHHHHHHHHhhCCCCeEEE---Ee----------------CCccchHHHHHHHHHHhCCCEEe
Q 015894          266 SLGD---TIGVGTP-GTVIPMLEAVLDAVPVDKLAV---HF----------------HDTYGQALSNILASLQMGISTVD  322 (398)
Q Consensus       266 ~L~D---T~G~~~P-~~v~~lv~~l~~~~p~~~l~~---H~----------------Hnd~GlA~ANalaAl~aGa~~VD  322 (398)
                      .||.   |.|+-.- .+++. +..+++  ...|+-+   |.                =-++-+...-+.||+.+|+|.+=
T Consensus       162 iLcERG~tFgy~~lv~D~r~-ip~mk~--~~lPVI~DpSHsvQ~pg~~~~~~~g~~s~G~Re~V~~larAAvA~GaDGlf  238 (290)
T PLN03033        162 MVCERGTMFGYNDLIVDPRN-LEWMRE--ANCPVVADITHSLQQPAGKKLDGGGVASGGLRELIPCIARTAVAVGVDGIF  238 (290)
T ss_pred             EEEeCCCCcCCCCcccchhh-hHHHHh--cCCCEEEeCCccccCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCEEE
Confidence            8887   3333211 12222 222232  2234444   43                13455778999999999999553

>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain

Probab=93.45  E-value=3  Score=42.19  Aligned_cols=138  Identities=20%  Similarity=0.142  Sum_probs=84.6

Q ss_pred             HHHHHcCCCEEEEeccC--------chH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-CC-cEEEEEeeeecCCC-CCCC
Q 015894          179 EAAVAAGAKEVAIFASA--------SES--FSKSNINCTIEDSLIRYRDVALAAREL-SI-PVRGYLSCVVGCPV-EGMV  245 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~~--------Sd~--~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~-~v~~~l~~~fg~~~-~~r~  245 (398)
                      ++|.++|.|.|.|...-        |+.  ++...+|-+.+.-.+.+.++++.+|+. |. .|.+-++..-.-+. ..-.
T Consensus       159 ~~a~~aGfDgVeih~ahGyLl~qFlSp~~N~R~D~yGGslenR~rf~~eii~air~~vg~d~v~vRis~~~~~~~~~~~~  238 (338)
T cd02933         159 RNAIEAGFDGVEIHGANGYLIDQFLRDGSNKRTDEYGGSIENRARFLLEVVDAVAEAIGADRVGIRLSPFGTFNDMGDSD  238 (338)
T ss_pred             HHHHHcCCCEEEEccccchhHHHhcCCccCCCCCcCCCcHHHhhhHHHHHHHHHHHHhCCCceEEEECccccCCCCCCCC
Confidence            46678999998885332        221  233445567777777788888888864 54 33333331100000 0124


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEcc--CcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhC-CCEEe
Q 015894          246 PPSKVAYVSKQLYDMGCSEISLGD--TIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMG-ISTVD  322 (398)
Q Consensus       246 ~~~~l~~~a~~l~~~Gad~I~L~D--T~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aG-a~~VD  322 (398)
                      ++++..++++.+.+.|+|.|.+.-  +... .+....++++.+++.++..-+.....+     ...+..+++.| +|.|-
T Consensus       239 ~~ee~~~~~~~l~~~g~d~i~vs~g~~~~~-~~~~~~~~~~~ik~~~~ipvi~~G~i~-----~~~a~~~l~~g~~D~V~  312 (338)
T cd02933         239 PEATFSYLAKELNKRGLAYLHLVEPRVAGN-PEDQPPDFLDFLRKAFKGPLIAAGGYD-----AESAEAALADGKADLVA  312 (338)
T ss_pred             CHHHHHHHHHHHHHcCCcEEEEecCCCCCc-ccccchHHHHHHHHHcCCCEEEECCCC-----HHHHHHHHHcCCCCEEE
Confidence            678899999999999999998832  2221 134456778888887753224444443     57777889887 77663

OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.

>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=93.45  E-value=2.1  Score=41.70  Aligned_cols=82  Identities=17%  Similarity=0.123  Sum_probs=48.8

Q ss_pred             HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecCCCCCCCCHHHHHHHHHH
Q 015894          178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAREL-SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQ  256 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~  256 (398)
                      ++.+.+.|+|.|-+-++.-..    +.+.+..+..+.+.++++.+|+. ++.+.+-+..        -.++++..++++.
T Consensus       117 a~~~~~~G~d~ielN~~cP~~----~~~~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~~--------~~~~~~~~~~a~~  184 (289)
T cd02810         117 ARKIERAGAKALELNLSCPNV----GGGRQLGQDPEAVANLLKAVKAAVDIPLLVKLSP--------YFDLEDIVELAKA  184 (289)
T ss_pred             HHHHHHhCCCEEEEEcCCCCC----CCCcccccCHHHHHHHHHHHHHccCCCEEEEeCC--------CCCHHHHHHHHHH
Confidence            455567799988775442111    11111111223445556666654 5666544431        1356788899999


Q ss_pred             HHhCCCCEEEEccCc
Q 015894          257 LYDMGCSEISLGDTI  271 (398)
Q Consensus       257 l~~~Gad~I~L~DT~  271 (398)
                      +.++|+|.|.+..+.
T Consensus       185 l~~~Gad~i~~~~~~  199 (289)
T cd02810         185 AERAGADGLTAINTI  199 (289)
T ss_pred             HHHcCCCEEEEEccc
Confidence            999999999987664

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of

>PRK05660 HemN family oxidoreductase; Provisional

Probab=93.45  E-value=3.2  Score=42.44  Aligned_cols=108  Identities=12%  Similarity=0.089  Sum_probs=69.6

Q ss_pred             HHHHHHHHHh-c---cCCcEEEEeC----CHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 015894          153 AKDVMAAIQN-V---EGARFPVLTP----NLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARE  224 (398)
Q Consensus       153 ~~~v~~~i~~-~---~~~~l~~l~~----n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~  224 (398)
                      ..++++.+++ .   +++.+++-+.    +.+.++...++|+.+|.+-+-.-+-..-..+|+.  ...+.+.++++.+++
T Consensus        77 l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~~~~~L~~l~r~--~~~~~~~~ai~~~~~  154 (378)
T PRK05660         77 IQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSFSEEKLKRLGRI--HGPDEAKRAAKLAQG  154 (378)
T ss_pred             HHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcCCHHHHHHhCCC--CCHHHHHHHHHHHHH
Confidence            3445555553 2   3455555452    3466788899999999886544333333344442  234445567788999


Q ss_pred             CCCcE-EEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 015894          225 LSIPV-RGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL  267 (398)
Q Consensus       225 ~G~~v-~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L  267 (398)
                      .|+.. .+.++  +|-|..   +.+.+.+.++.+.++|++.|.+
T Consensus       155 ~G~~~v~~dli--~Glpgq---t~~~~~~~l~~~~~l~p~~is~  193 (378)
T PRK05660        155 LGLRSFNLDLM--HGLPDQ---SLEEALDDLRQAIALNPPHLSW  193 (378)
T ss_pred             cCCCeEEEEee--cCCCCC---CHHHHHHHHHHHHhcCCCeEEe
Confidence            99963 45555  666653   6788888899999999998753

>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed

Probab=93.43  E-value=3  Score=38.33  Aligned_cols=155  Identities=16%  Similarity=0.146  Sum_probs=84.7

Q ss_pred             HHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhcc----CCcEEEEeCCHhhHHHHHHcCCCEEEEeccCc
Q 015894          121 KVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVE----GARFPVLTPNLKGFEAAVAAGAKEVAIFASAS  196 (398)
Q Consensus       121 k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~----~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~S  196 (398)
                      -.+.++.+.+.|++.|++.....        +..+....++++.    +.....++.  ..++.+.+.|++.|++...  
T Consensus        23 ~~~~~~~~~~~gv~~v~lr~~~~--------~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~~a~~~gad~vh~~~~--   90 (212)
T PRK00043         23 LLEVVEAALEGGVTLVQLREKGL--------DTRERLELARALKELCRRYGVPLIVN--DRVDLALAVGADGVHLGQD--   90 (212)
T ss_pred             HHHHHHHHHhcCCCEEEEeCCCC--------CHHHHHHHHHHHHHHHHHhCCeEEEe--ChHHHHHHcCCCEEecCcc--
Confidence            45677888899999999975432        1223333333221    111122332  4678899999999887322  


Q ss_pred             hHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc---cCc-C
Q 015894          197 ESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG---DTI-G  272 (398)
Q Consensus       197 d~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~---DT~-G  272 (398)
                      +.        .        ...++..++.+..+.  ++    +     .+++.    +.++.+.|+|.|.+.   +|. .
T Consensus        91 ~~--------~--------~~~~~~~~~~~~~~g--~~----~-----~t~~e----~~~a~~~gaD~v~~~~~~~~~~~  139 (212)
T PRK00043         91 DL--------P--------VADARALLGPDAIIG--LS----T-----HTLEE----AAAALAAGADYVGVGPIFPTPTK  139 (212)
T ss_pred             cC--------C--------HHHHHHHcCCCCEEE--Ee----C-----CCHHH----HHHHhHcCCCEEEECCccCCCCC
Confidence            10        0        112233344555443  22    1     13443    334557899999763   211 1


Q ss_pred             cCC-HHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894          273 VGT-PGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD  322 (398)
Q Consensus       273 ~~~-P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD  322 (398)
                      ... |..-.+.++.+++.++..++..-+    |....|.-.++.+|++.|=
T Consensus       140 ~~~~~~~g~~~~~~~~~~~~~~~v~a~G----GI~~~~i~~~~~~Ga~gv~  186 (212)
T PRK00043        140 KDAKAPQGLEGLREIRAAVGDIPIVAIG----GITPENAPEVLEAGADGVA  186 (212)
T ss_pred             CCCCCCCCHHHHHHHHHhcCCCCEEEEC----CcCHHHHHHHHHcCCCEEE
Confidence            111 111134556666555544565543    6666899999999999773

>TIGR03700 mena_SCO4494 putative menaquinone biosynthesis protein, SCO4494 family

Probab=93.40  E-value=0.8  Score=46.39  Aligned_cols=77  Identities=17%  Similarity=0.251  Sum_probs=57.7

Q ss_pred             CCCHHHHHHHHHHHHhCCCCEEEEccCcCc-CCHHHHHHHHHHHHhhCCCCeEEEEeC---------CccchHHHHHHHH
Q 015894          244 MVPPSKVAYVSKQLYDMGCSEISLGDTIGV-GTPGTVIPMLEAVLDAVPVDKLAVHFH---------DTYGQALSNILAS  313 (398)
Q Consensus       244 r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~-~~P~~v~~lv~~l~~~~p~~~l~~H~H---------nd~GlA~ANalaA  313 (398)
                      +.+++++.+.++.+.+.|+++|+|.+.... ...+.+.++++.+++.+|.  +.+|.-         +..|+..-..+..
T Consensus        78 ~l~~eeI~~~a~~~~~~G~~~v~l~~G~~p~~~~~~~~e~i~~Ik~~~p~--i~i~~~~~~ei~~~~~~~g~~~~e~l~~  155 (351)
T TIGR03700        78 AMSLEEIVARVKEAYAPGATEVHIVGGLHPNLPFEWYLDMIRTLKEAYPD--LHVKAFTAVEIHHFSKISGLPTEEVLDE  155 (351)
T ss_pred             CCCHHHHHHHHHHHHHCCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCC--ceEEeCCHHHHHHHHHHcCCCHHHHHHH
Confidence            468999999999999999999999843222 2236889999999999986  444432         3467777776776


Q ss_pred             H-HhCCCEEe
Q 015894          314 L-QMGISTVD  322 (398)
Q Consensus       314 l-~aGa~~VD  322 (398)
                      + +||++.+.
T Consensus       156 LkeAGld~~~  165 (351)
T TIGR03700       156 LKEAGLDSMP  165 (351)
T ss_pred             HHHcCCCcCC
Confidence            6 48999776

Members of this protein family appear to be involved in menaquinone biosynthesis by an alternate pathway via futalosine, based on close phylogenetic correlation with known markers of the futalosine pathway, gene clustering in many organisms, and paralogy with the SCO4550 protein.

>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B

Probab=93.35  E-value=2.7  Score=40.46  Aligned_cols=183  Identities=15%  Similarity=0.169  Sum_probs=104.5

Q ss_pred             HHHHHhcCCCEEEEecCC--CCCccc--CCCCHHHHHHHHHhcc-CCcEEEEeC------C-H----hhHHHHHHcCCCE
Q 015894          125 IKLLVSSGLAVVEATSFV--SPKWVP--QLADAKDVMAAIQNVE-GARFPVLTP------N-L----KGFEAAVAAGAKE  188 (398)
Q Consensus       125 a~~L~~aGv~~IEvG~~~--~~~~~p--~~~D~~~v~~~i~~~~-~~~l~~l~~------n-~----~~ie~a~~~Gv~~  188 (398)
                      ++.+.++|++.+=++++.  .....|  .+-+.++++..++.+. .+.+.+++-      + .    +-++...++|+..
T Consensus        22 Ar~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~~iPv~vD~d~GyG~~~~~v~~tv~~~~~aG~ag  101 (238)
T PF13714_consen   22 ARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAVSIPVIVDADTGYGNDPENVARTVRELERAGAAG  101 (238)
T ss_dssp             HHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHSSSEEEEE-TTTSSSSHHHHHHHHHHHHHCT-SE
T ss_pred             HHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhhcCcEEEEcccccCchhHHHHHHHHHHHHcCCcE
Confidence            566788899998887531  111223  2345678888887653 244455542      2 2    3456778899999


Q ss_pred             EEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 015894          189 VAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG  268 (398)
Q Consensus       189 v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~  268 (398)
                      |+|-+.-.. | ..+-=.+.++..++++.+.+..++.++.+.+ =+.++..   .....++..+=++...++|||.|.+.
T Consensus       102 i~IEDq~~~-~-~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~A-RTDa~~~---~~~~~deaI~R~~aY~eAGAD~ifi~  175 (238)
T PF13714_consen  102 INIEDQRCG-H-GGKQLVSPEEMVAKIRAAVDARRDPDFVIIA-RTDAFLR---AEEGLDEAIERAKAYAEAGADMIFIP  175 (238)
T ss_dssp             EEEESBSTT-T-STT-B--HHHHHHHHHHHHHHHSSTTSEEEE-EECHHCH---HHHHHHHHHHHHHHHHHTT-SEEEET
T ss_pred             EEeeccccC-C-CCCceeCHHHHHHHHHHHHHhccCCeEEEEE-ecccccc---CCCCHHHHHHHHHHHHHcCCCEEEeC
Confidence            999887111 2 2222238999999998888887777854431 1111100   01123555555667778999999875


Q ss_pred             cCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeecc
Q 015894          269 DTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSV  325 (398)
Q Consensus       269 DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv  325 (398)
                         |..+++++.++.+.+    + .|+-+..+  .+.  -+.-.--+.|+++|-...
T Consensus       176 ---~~~~~~~i~~~~~~~----~-~Pl~v~~~--~~~--~~~~eL~~lGv~~v~~~~  220 (238)
T PF13714_consen  176 ---GLQSEEEIERIVKAV----D-GPLNVNPG--PGT--LSAEELAELGVKRVSYGN  220 (238)
T ss_dssp             ---TSSSHHHHHHHHHHH----S-SEEEEETT--SSS--S-HHHHHHTTESEEEETS
T ss_pred             ---CCCCHHHHHHHHHhc----C-CCEEEEcC--CCC--CCHHHHHHCCCcEEEEcH
Confidence               446677777766666    2 45666664  322  444445578988875443

...

>TIGR00559 pdxJ pyridoxine 5'-phosphate synthase

Probab=93.29  E-value=0.29  Score=47.04  Aligned_cols=106  Identities=17%  Similarity=0.303  Sum_probs=69.1

Q ss_pred             CCcEEEEe-CCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCC-CHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC
Q 015894          165 GARFPVLT-PNLKGFEAAVAAGAKEVAIFASASESFSKSNINC-TIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE  242 (398)
Q Consensus       165 ~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~-s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~  242 (398)
                      +++++.+. |+.++++.|.+.|++.|-++..   .+.. .++. ..++.++++..+.++|+++|+.|.+          .
T Consensus       123 gI~VSLFiDP~~~qi~~A~~~GAd~VELhTG---~YA~-a~~~~~~~~el~~i~~aa~~A~~lGL~VnA----------G  188 (237)
T TIGR00559       123 GIEVSLFIDADKDQISAAAEVGADRIEIHTG---PYAN-AYNKKEMAEELQRIVKASVHAHSLGLKVNA----------G  188 (237)
T ss_pred             CCEEEEEeCCCHHHHHHHHHhCcCEEEEech---hhhc-CCCchhHHHHHHHHHHHHHHHHHcCCEEec----------C
Confidence            56666666 6788999999999999998765   2222 1222 2245699999999999999999862          1


Q ss_pred             CCCCHHHHHHHHHHHHhCC-CCEEEE-----ccCcCcCCHHHHHHHHHHHH
Q 015894          243 GMVPPSKVAYVSKQLYDMG-CSEISL-----GDTIGVGTPGTVIPMLEAVL  287 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~G-ad~I~L-----~DT~G~~~P~~v~~lv~~l~  287 (398)
                      .-.+.+.+..+++   --+ ...++|     ++..=++.+..|+++.+.++
T Consensus       189 HgLny~Nv~~i~~---~~~~i~EvnIGHsiia~Al~~Gl~~AV~~m~~~~~  236 (237)
T TIGR00559       189 HGLNYHNVKYFAE---ILPYLDELNIGHAIIADAVYLGLEEAIREMRDLIK  236 (237)
T ss_pred             CCCCHHhHHHHHh---CCCCceEEecCHHHHHHHHHHhHHHHHHHHHHHHh
Confidence            2245555555543   223 566654     45555556666666665543

PdxJ is required in the biosynthesis of pyridoxine (vitamin B6), a precursor to the enzyme cofactor pyridoxal phosphate. ECOCYC describes the predicted reaction equation as 1-amino-propan-2-one-3-phosphate + deoxyxylulose-5-phosphate = pyridoxine-5'-phosphate. The product of that reaction is oxidized by PdxH to pyridoxal 5'-phosphate.

>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene []

Probab=93.26  E-value=0.52  Score=43.90  Aligned_cols=89  Identities=17%  Similarity=0.305  Sum_probs=58.4

Q ss_pred             HHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCC
Q 015894          253 VSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCP  332 (398)
Q Consensus       253 ~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp  332 (398)
                      -++++.++|++.|.| |...-..|..+.++++.+++++  ..+-.-+-     -+..++.|.++|+|.|-+|+.|+=+  
T Consensus        56 ev~~l~~aGadIIAl-DaT~R~Rp~~l~~li~~i~~~~--~l~MADis-----t~ee~~~A~~~G~D~I~TTLsGYT~--  125 (192)
T PF04131_consen   56 EVDALAEAGADIIAL-DATDRPRPETLEELIREIKEKY--QLVMADIS-----TLEEAINAAELGFDIIGTTLSGYTP--  125 (192)
T ss_dssp             HHHHHHHCT-SEEEE-E-SSSS-SS-HHHHHHHHHHCT--SEEEEE-S-----SHHHHHHHHHTT-SEEE-TTTTSST--
T ss_pred             HHHHHHHcCCCEEEE-ecCCCCCCcCHHHHHHHHHHhC--cEEeeecC-----CHHHHHHHHHcCCCEEEcccccCCC--
Confidence            356677899999987 7778888999999999999988  33333332     2678899999999999999999865  


Q ss_pred             CCCCCCCCccHHHHHHHHHhCC
Q 015894          333 YAKGASGNVATEDVVYMLNGLG  354 (398)
Q Consensus       333 ~a~graGNa~lE~vv~~L~~~G  354 (398)
                      +.   .|..|=-+++..|.+.+
T Consensus       126 ~t---~~~~pD~~lv~~l~~~~  144 (192)
T PF04131_consen  126 YT---KGDGPDFELVRELVQAD  144 (192)
T ss_dssp             TS---TTSSHHHHHHHHHHHTT
T ss_pred             CC---CCCCCCHHHHHHHHhCC
Confidence            22   22333344444555443

; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.

>PRK08610 fructose-bisphosphate aldolase; Reviewed

Probab=93.22  E-value=1.7  Score=43.07  Aligned_cols=104  Identities=13%  Similarity=0.191  Sum_probs=73.6

Q ss_pred             HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEccCc-CcCC-HHHHHHHHHHHHhhCC
Q 015894          215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGDTI-GVGT-PGTVIPMLEAVLDAVP  291 (398)
Q Consensus       215 ~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~DT~-G~~~-P~~v~~lv~~l~~~~p  291 (398)
                      ++++.+.|++.|+-|- .+.+         ++.+.+..+++.+.+.+... |.+.... ..+. ...+..++..+.++.+
T Consensus         6 ~k~lL~~A~~~~yAV~-AfN~---------~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~~~A~~~~   75 (286)
T PRK08610          6 MKEMLIDAKENGYAVG-QYNL---------NNLEFTQAILEASQEENAPVILGVSEGAARYMSGFYTVVKMVEGLMHDLN   75 (286)
T ss_pred             HHHHHHHHHHCCceEE-EEEE---------CCHHHHHHHHHHHHHHCCCEEEEcCccHHhhcCcHHHHHHHHHHHHHHcC
Confidence            5677888999998774 2331         46788999999999999885 4444332 2223 3557888888877775


Q ss_pred             -CCeEEEEeCCccchHHHHHHHHHHhCCC--EEeeccccCCC
Q 015894          292 -VDKLAVHFHDTYGQALSNILASLQMGIS--TVDSSVSGLGG  330 (398)
Q Consensus       292 -~~~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGe  330 (398)
                       .+|+.+|.  |.|.-...+..|+++|.+  ++|+|-..+-+
T Consensus        76 ~~vPV~lHL--DHg~~~e~i~~ai~~GftSVM~DgS~l~~ee  115 (286)
T PRK08610         76 ITIPVAIHL--DHGSSFEKCKEAIDAGFTSVMIDASHSPFEE  115 (286)
T ss_pred             CCCCEEEEC--CCCCCHHHHHHHHHcCCCEEEEeCCCCCHHH
Confidence             25677654  667778889999999998  66988765443

>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase

Probab=93.19  E-value=9.9  Score=38.52  Aligned_cols=230  Identities=21%  Similarity=0.192  Sum_probs=123.0

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe-CCHhhHHHHHHcCCCEEEEeccC
Q 015894          117 PAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT-PNLKGFEAAVAAGAKEVAIFASA  195 (398)
Q Consensus       117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~~~  195 (398)
                      +.+..++-++.|.++|.+.+-+..+.       +.+++. +..+++.-++.+.+=. .+.+-.-.+++.|++.+||=-. 
T Consensus        32 Dv~atv~QI~~L~~aGceiVRvavp~-------~~~A~a-l~~I~~~~~iPlVADIHFd~~lAl~a~~~g~dkiRINPG-  102 (346)
T TIGR00612        32 DIDSTVAQIRALEEAGCDIVRVTVPD-------RESAAA-FEAIKEGTNVPLVADIHFDYRLAALAMAKGVAKVRINPG-  102 (346)
T ss_pred             hHHHHHHHHHHHHHcCCCEEEEcCCC-------HHHHHh-HHHHHhCCCCCEEEeeCCCcHHHHHHHHhccCeEEECCC-
Confidence            45556778889999999999998643       233332 2333332223333311 2333333567789999999322 


Q ss_pred             chHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC------CCCCHHHHH----HHHHHHHhCCCCE-
Q 015894          196 SESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE------GMVPPSKVA----YVSKQLYDMGCSE-  264 (398)
Q Consensus       196 Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~------~r~~~~~l~----~~a~~l~~~Gad~-  264 (398)
                             |++.     -++++++++.||++|+.++..+.  .|+-..      +..+++-+.    +.++.+.++|.+. 
T Consensus       103 -------Nig~-----~e~v~~vv~~ak~~~ipIRIGVN--~GSL~~~~~~kyg~~t~eamveSAl~~v~~le~~~F~di  168 (346)
T TIGR00612       103 -------NIGF-----RERVRDVVEKARDHGKAMRIGVN--HGSLERRLLEKYGDATAEAMVQSALEEAAILEKLGFRNV  168 (346)
T ss_pred             -------CCCC-----HHHHHHHHHHHHHCCCCEEEecC--CCCCcHHHHHHcCCCCHHHHHHHHHHHHHHHHHCCCCcE
Confidence                   4443     36678899999999999996665  343211      112344333    3566677788764 


Q ss_pred             -EEEccCcCcCCHHHHHHHHHHHHhhC--CCCeEEEEeCCccchHHHHHHHH----HHhCC-CEEeeccccCCCCCCCCC
Q 015894          265 -ISLGDTIGVGTPGTVIPMLEAVLDAV--PVDKLAVHFHDTYGQALSNILAS----LQMGI-STVDSSVSGLGGCPYAKG  336 (398)
Q Consensus       265 -I~L~DT~G~~~P~~v~~lv~~l~~~~--p~~~l~~H~Hnd~GlA~ANalaA----l~aGa-~~VD~Sv~GlGecp~a~g  336 (398)
                       |+++.|    .+..+-+-.+.+.+..  | +.|++-=--+.-.++-.+-.+    +..|+ |.|-+|+.+         
T Consensus       169 viS~KsS----dv~~~i~ayr~la~~~dyP-LHlGVTEAG~~~~G~IKSaigig~LL~~GIGDTIRVSLT~---------  234 (346)
T TIGR00612       169 VLSMKAS----DVAETVAAYRLLAERSDYP-LHLGVTEAGMGVKGIVKSSAGIGILLARGIGDTIRVSLTD---------  234 (346)
T ss_pred             EEEEEcC----CHHHHHHHHHHHHhhCCCC-ceeccccCCCCCCchhHHHHHHHHHHhhCCCCeEEEECCC---------
Confidence             566655    3333333333333333  3 122221111222222222222    24565 677777662         


Q ss_pred             CCCCccHHHHHHH---HHhCCC--------------CCccChHHHHHHHHHHHH-HhCCCCCCCcccccccc
Q 015894          337 ASGNVATEDVVYM---LNGLGV--------------RTNVDIRKLMIAGDFICK-HLGRTSGSKTAIALSKT  390 (398)
Q Consensus       337 raGNa~lE~vv~~---L~~~Gi--------------~t~iDl~~L~~~~~~v~~-~~g~~~~~~~pivG~~~  390 (398)
                          .|.||+-..   |+.+|+              ++.+|+..+.+   .+++ ..+++.|-+.++.|.-+
T Consensus       235 ----dP~~EV~va~~IL~slglr~~g~~iiSCPtCGR~~~dl~~~~~---~ve~~l~~~~~~l~VAVMGCvV  299 (346)
T TIGR00612       235 ----DPTHEVPVAFEILQSLGLRARGVEIVACPSCGRTGFDVEKVVR---RVQEALFHLKTPLKVAVMGCVV  299 (346)
T ss_pred             ----CcHHHHHHHHHHHHHcCCCcCCCeEEECCCCCCcCCCHHHHHH---HHHHHHhcCCCCCEEEEECcee
Confidence                246766553   333443              24456554433   4443 44566777777777643

Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.

>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist

Probab=93.04  E-value=2  Score=42.43  Aligned_cols=104  Identities=11%  Similarity=0.118  Sum_probs=71.7

Q ss_pred             HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCc--CcCC-HHHHHHHHHHHHhhCC
Q 015894          215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTI--GVGT-PGTVIPMLEAVLDAVP  291 (398)
Q Consensus       215 ~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~--G~~~-P~~v~~lv~~l~~~~p  291 (398)
                      ++++.+.|++.++-|- .+.+         ++.+.+..+++.+.+.+...|-..-..  .... ...+..++..+.+.++
T Consensus         4 ~~~~l~~A~~~~yav~-Afn~---------~n~e~~~avi~aAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~~a~~~~   73 (282)
T TIGR01859         4 GKEILQKAKKEGYAVG-AFNF---------NNLEWTQAILEAAEEENSPVIIQVSEGAIKYMGGYKMAVAMVKTLIERMS   73 (282)
T ss_pred             HHHHHHHHHHCCceEE-EEEE---------CCHHHHHHHHHHHHHhCCCEEEEcCcchhhccCcHHHHHHHHHHHHHHCC
Confidence            4577888999999774 2321         467889999999999998865443221  2222 3557778888887775


Q ss_pred             CCeEEEEeCCccchHHHHHHHHHHhCCC--EEeeccccCCC
Q 015894          292 VDKLAVHFHDTYGQALSNILASLQMGIS--TVDSSVSGLGG  330 (398)
Q Consensus       292 ~~~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGe  330 (398)
                      .+|+.+|.  |.|.-+.....|+++|++  ++|.|-..+-+
T Consensus        74 ~vpv~lhl--DH~~~~e~i~~ai~~Gf~sVmid~s~l~~~e  112 (282)
T TIGR01859        74 IVPVALHL--DHGSSYESCIKAIKAGFSSVMIDGSHLPFEE  112 (282)
T ss_pred             CCeEEEEC--CCCCCHHHHHHHHHcCCCEEEECCCCCCHHH
Confidence            35888884  445557889999999998  44666655443

This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.

>cd00959 DeoC 2-deoxyribose-5-phosphate aldolase (DERA) of the DeoC family

Probab=93.04  E-value=7.6  Score=36.12  Aligned_cols=140  Identities=18%  Similarity=0.197  Sum_probs=81.0

Q ss_pred             HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894          178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL  257 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l  257 (398)
                      ++.+.+.|++-|.+.    +.            .+..+   .+..+..++.+.+.+.    .|... .+.+....-++.+
T Consensus        23 ~~~a~~~~~~av~v~----p~------------~v~~~---~~~l~~~~~~v~~~~~----fp~g~-~~~~~k~~eve~A   78 (203)
T cd00959          23 CDEAKEYGFAAVCVN----PC------------FVPLA---REALKGSGVKVCTVIG----FPLGA-TTTEVKVAEAREA   78 (203)
T ss_pred             HHHHHHcCCCEEEEc----HH------------HHHHH---HHHcCCCCcEEEEEEe----cCCCC-CcHHHHHHHHHHH
Confidence            456677788888764    21            12222   2222333444443333    35443 4455555557888


Q ss_pred             HhCCCCEEEEccCcCcC---CHHHHHHHHHHHHhhCCCCeE----EEEeCCccchHHHHHHHHHHhCCCEEeeccccCCC
Q 015894          258 YDMGCSEISLGDTIGVG---TPGTVIPMLEAVLDAVPVDKL----AVHFHDTYGQALSNILASLQMGISTVDSSVSGLGG  330 (398)
Q Consensus       258 ~~~Gad~I~L~DT~G~~---~P~~v~~lv~~l~~~~p~~~l----~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGe  330 (398)
                      .++|||.|.+.=-.|..   .-..+.+-+..+++...+.++    +.-.-++. .=.-.+..|+++|+|+|=++ .|.+ 
T Consensus        79 ~~~GAdevdvv~~~g~~~~~~~~~~~~ei~~v~~~~~g~~lkvI~e~~~l~~~-~i~~a~ria~e~GaD~IKTs-TG~~-  155 (203)
T cd00959          79 IADGADEIDMVINIGALKSGDYEAVYEEIAAVVEACGGAPLKVILETGLLTDE-EIIKACEIAIEAGADFIKTS-TGFG-  155 (203)
T ss_pred             HHcCCCEEEEeecHHHHhCCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCHH-HHHHHHHHHHHhCCCEEEcC-CCCC-
Confidence            89999998887777744   335577778888876544443    22222222 22334667899999999999 4443 


Q ss_pred             CCCCCCCCCCccHHHHHHHHH
Q 015894          331 CPYAKGASGNVATEDVVYMLN  351 (398)
Q Consensus       331 cp~a~graGNa~lE~vv~~L~  351 (398)
                             ++++.+|++-.+.+
T Consensus       156 -------~~~at~~~v~~~~~  169 (203)
T cd00959         156 -------PGGATVEDVKLMKE  169 (203)
T ss_pred             -------CCCCCHHHHHHHHH
Confidence                   23566666554443

DERA belongs to the class I aldolases and catalyzes a reversible aldol reaction between acetaldehyde and glyceraldehyde 3-phosphate to generate 2-deoxyribose 5-phosphate. DERA is unique in catalyzing the aldol reaction between two aldehydes, and its broad substrate specificity confers considerable utility as a biocatalyst, offering an environmentally benign alternative to chiral transition metal catalysis of the asymmetric aldol reaction.

>PRK05628 coproporphyrinogen III oxidase; Validated

Probab=93.00  E-value=4.9  Score=40.92  Aligned_cols=108  Identities=21%  Similarity=0.194  Sum_probs=69.8

Q ss_pred             HHHHHHHHHhc----cCCcEEEEe-C---CHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 015894          153 AKDVMAAIQNV----EGARFPVLT-P---NLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARE  224 (398)
Q Consensus       153 ~~~v~~~i~~~----~~~~l~~l~-~---n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~  224 (398)
                      ..++++.++..    ++.++++-+ +   +.+-++...++|+..|.+-+-.-+-.....+|+.  ...+.+.++++.+++
T Consensus        78 l~~ll~~i~~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS~~~~~L~~l~R~--~s~~~~~~a~~~l~~  155 (375)
T PRK05628         78 LARVLDAVRDTFGLAPGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQSAAPHVLAVLDRT--HTPGRAVAAAREARA  155 (375)
T ss_pred             HHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCC--CCHHHHHHHHHHHHH
Confidence            34555555532    345555544 2   3456778888999999885543333333344442  223445567788899


Q ss_pred             CCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 015894          225 LSIP-VRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL  267 (398)
Q Consensus       225 ~G~~-v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L  267 (398)
                      .|+. +.+.++  +|.|..   +.+.+.+-++.+.++|++.|.+
T Consensus       156 ~g~~~v~~dli--~GlPgq---t~~~~~~tl~~~~~l~~~~i~~  194 (375)
T PRK05628        156 AGFEHVNLDLI--YGTPGE---SDDDWRASLDAALEAGVDHVSA  194 (375)
T ss_pred             cCCCcEEEEEe--ccCCCC---CHHHHHHHHHHHHhcCCCEEEe
Confidence            9998 776665  676754   5788888888999999988754

>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional

Probab=92.98  E-value=10  Score=37.46  Aligned_cols=178  Identities=13%  Similarity=0.149  Sum_probs=107.5

Q ss_pred             CHHHHHHHHHHHH----hcCCCEEEEecCC-----CCCcc--cCCCCHHHHHHHHHhccCCcEEEEeCCHhhHHHHHHcC
Q 015894          117 PAVVKVELIKLLV----SSGLAVVEATSFV-----SPKWV--PQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAG  185 (398)
Q Consensus       117 ~~~~k~~ia~~L~----~aGv~~IEvG~~~-----~~~~~--p~~~D~~~v~~~i~~~~~~~l~~l~~n~~~ie~a~~~G  185 (398)
                      +.++.+++++.|.    ++|++.+==|+|-     +|...  |.+..-=++++.+++-.+..+..=+....+++.+.+. 
T Consensus        28 s~e~~~~iA~~lk~i~~~~g~~~~fK~sf~KapRTSp~sFqG~G~eeGL~iL~~vk~~~GlpvvTeV~~~~~~~~~ae~-  106 (281)
T PRK12457         28 SLDFTLDVCGEYVEVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEGLRIFEEVKARFGVPVITDVHEVEQAAPVAEV-  106 (281)
T ss_pred             CHHHHHHHHHHHHHHHHHCCCcEEeeeccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCceEEEeCCHHHHHHHhhh-
Confidence            6678888999876    6999987776653     22211  1111122333444433455544444677888888888 


Q ss_pred             CCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE
Q 015894          186 AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEI  265 (398)
Q Consensus       186 v~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I  265 (398)
                      +|.+.|-....                ++ -++++.+.+.|..|.  |-      ..--.++++++..++.+.+.|...|
T Consensus       107 vDilQIgAr~~----------------rn-tdLL~a~~~t~kpV~--lK------rGqf~s~~e~~~aae~i~~~Gn~~v  161 (281)
T PRK12457        107 ADVLQVPAFLA----------------RQ-TDLVVAIAKTGKPVN--IK------KPQFMSPTQMKHVVSKCREAGNDRV  161 (281)
T ss_pred             CeEEeeCchhh----------------ch-HHHHHHHhccCCeEE--ec------CCCcCCHHHHHHHHHHHHHcCCCeE
Confidence            89999853211                11 145566666777764  11      1112467889999999999999998


Q ss_pred             EEccC---cCcCC-HHHHHHHHHHHHhhCCCCeEEE---Ee-----------CCccchHHHHHHHHHHhCCCEE
Q 015894          266 SLGDT---IGVGT-PGTVIPMLEAVLDAVPVDKLAV---HF-----------HDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       266 ~L~DT---~G~~~-P~~v~~lv~~l~~~~p~~~l~~---H~-----------Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                      .||.=   .|+-. +.++.. |..+++.++..|+-+   |.           =-++-+....+.||+.+|||.+
T Consensus       162 ilcERG~~fgy~~~~~D~~~-ip~mk~~~t~lPVi~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~GaDGl  234 (281)
T PRK12457        162 ILCERGSSFGYDNLVVDMLG-FRQMKRTTGDLPVIFDVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVGLAGL  234 (281)
T ss_pred             EEEeCCCCCCCCCcccchHH-HHHHHhhCCCCCEEEeCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhCCCEE
Confidence            88872   12221 222322 233444334455655   43           3355567889999999999955

>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE)

Probab=92.89  E-value=7.4  Score=35.59  Aligned_cols=173  Identities=17%  Similarity=0.152  Sum_probs=98.1

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEE--EEeCCH-hhHHHHHHcCCCEEEE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFP--VLTPNL-KGFEAAVAAGAKEVAI  191 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~--~l~~n~-~~ie~a~~~Gv~~v~i  191 (398)
                      .++...-.+.++.+.++|++.|+++.-..+ +.|...-..+..+.+++..+..+.  .++.+. +.++.+.++|++.|.+
T Consensus         8 ~~d~~~~~~~~~~~~~~G~~~i~l~~~d~~-~~~~~~~~~~~~~~i~~~~~~~~~v~l~~~d~~~~~~~~~~~g~dgv~v   86 (211)
T cd00429           8 SADFANLGEELKRLEEAGADWIHIDVMDGH-FVPNLTFGPPVVKALRKHTDLPLDVHLMVENPERYIEAFAKAGADIITF   86 (211)
T ss_pred             cCCHHHHHHHHHHHHHcCCCEEEEecccCC-CCCccccCHHHHHHHHhhCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEE
Confidence            355566678899999999999999642111 111111111334444432233332  333342 4578888999999877


Q ss_pred             eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc---
Q 015894          192 FASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG---  268 (398)
Q Consensus       192 ~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~---  268 (398)
                      ....++                ...+.++.+++.|+.+...+.     +.   ++.+.+.++.     .++|.|.+.   
T Consensus        87 h~~~~~----------------~~~~~~~~~~~~~~~~g~~~~-----~~---~~~~~~~~~~-----~~~d~i~~~~~~  137 (211)
T cd00429          87 HAEATD----------------HLHRTIQLIKELGMKAGVALN-----PG---TPVEVLEPYL-----DEVDLVLVMSVN  137 (211)
T ss_pred             Cccchh----------------hHHHHHHHHHHCCCeEEEEec-----CC---CCHHHHHHHH-----hhCCEEEEEEEC
Confidence            554322                223457788888887653221     11   2233333332     226666442   


Q ss_pred             -cCcCcCCHHHHHHHHHHHHhhCC----CCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894          269 -DTIGVGTPGTVIPMLEAVLDAVP----VDKLAVHFHDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       269 -DT~G~~~P~~v~~lv~~l~~~~p----~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                       -+.|...+....+.++.+++..+    ..|+.+=    -|.-..|+-.++++|++.|
T Consensus       138 ~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~pi~v~----GGI~~env~~~~~~gad~i  191 (211)
T cd00429         138 PGFGGQKFIPEVLEKIRKLRELIPENNLNLLIEVD----GGINLETIPLLAEAGADVL  191 (211)
T ss_pred             CCCCCcccCHHHHHHHHHHHHHHHhcCCCeEEEEE----CCCCHHHHHHHHHcCCCEE
Confidence             22333445566677777776553    3455443    3777888888999999966

This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.

>cd00377 ICL_PEPM Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage

Probab=92.87  E-value=1.8  Score=41.71  Aligned_cols=137  Identities=18%  Similarity=0.186  Sum_probs=88.5

Q ss_pred             hHHHHHHcCCCEEEEeccCchH-HHh-hhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHH
Q 015894          177 GFEAAVAAGAKEVAIFASASES-FSK-SNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVS  254 (398)
Q Consensus       177 ~ie~a~~~Gv~~v~i~~~~Sd~-~~~-~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a  254 (398)
                      ..+.+.++|++.+.+..+.--. +-. ..-..+.++.+..++.+.+.+   ..++.+.+-      . +-.+++.+.+.+
T Consensus        21 sA~~~e~~G~~ai~~s~~~~~~s~G~pD~~~~~~~e~~~~~~~I~~~~---~~Pv~~D~~------~-G~g~~~~~~~~v   90 (243)
T cd00377          21 SARLAERAGFKAIYTSGAGVAASLGLPDGGLLTLDEVLAAVRRIARAV---DLPVIADAD------T-GYGNALNVARTV   90 (243)
T ss_pred             HHHHHHHcCCCEEEeccHHHHHhcCCCCCCcCCHHHHHHHHHHHHhhc---cCCEEEEcC------C-CCCCHHHHHHHH
Confidence            3455667798888774321110 000 011336777777776666544   445543232      1 223667888889


Q ss_pred             HHHHhCCCCEEEEccCcC-----------cCCHHHHHHHHHHHHhhCC---CCeEEEE-----e-CCccchHHHHHHHHH
Q 015894          255 KQLYDMGCSEISLGDTIG-----------VGTPGTVIPMLEAVLDAVP---VDKLAVH-----F-HDTYGQALSNILASL  314 (398)
Q Consensus       255 ~~l~~~Gad~I~L~DT~G-----------~~~P~~v~~lv~~l~~~~p---~~~l~~H-----~-Hnd~GlA~ANalaAl  314 (398)
                      +.+.+.|++.|.|-|..+           +.++++..+.+++.++...   +..|-.-     . .+...-|+.-+.++.
T Consensus        91 ~~~~~~G~~gv~iED~~~~k~~g~~~~~~~~~~ee~~~ki~aa~~a~~~~~~~~IiARTDa~~~~~~~~~eai~Ra~ay~  170 (243)
T cd00377          91 RELEEAGAAGIHIEDQVGPKKCGHHGGKVLVPIEEFVAKIKAARDARDDLPDFVIIARTDALLAGEEGLDEAIERAKAYA  170 (243)
T ss_pred             HHHHHcCCEEEEEecCCCCccccCCCCCeecCHHHHHHHHHHHHHHHhccCCeEEEEEcCchhccCCCHHHHHHHHHHHH
Confidence            999999999999988763           5678888888988887654   3323222     1 156777999999999


Q ss_pred             HhCCCEEee
Q 015894          315 QMGISTVDS  323 (398)
Q Consensus       315 ~aGa~~VD~  323 (398)
                      ++|||.|=.
T Consensus       171 ~AGAD~v~v  179 (243)
T cd00377         171 EAGADGIFV  179 (243)
T ss_pred             HcCCCEEEe
Confidence            999996643

Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to

>PRK05799 coproporphyrinogen III oxidase; Provisional

Probab=92.82  E-value=3.1  Score=42.23  Aligned_cols=95  Identities=15%  Similarity=0.164  Sum_probs=62.7

Q ss_pred             CCcEEEEe-C---CHhhHHHHHHcCCCEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeec
Q 015894          165 GARFPVLT-P---NLKGFEAAVAAGAKEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAARELSIP-VRGYLSCVVG  238 (398)
Q Consensus       165 ~~~l~~l~-~---n~~~ie~a~~~Gv~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~-v~~~l~~~fg  238 (398)
                      ++.+++-+ +   +.+-++...++|+..|.+-+ +.+|... ..+|+.  ...+.+.++++.+++.|+. +.+.++  +|
T Consensus        85 ~~eitie~~p~~~t~e~l~~l~~~G~~rvsiGvqS~~d~~L-~~l~R~--~~~~~~~~ai~~l~~~g~~~v~~dli--~G  159 (374)
T PRK05799         85 DLEFTVEGNPGTFTEEKLKILKSMGVNRLSIGLQAWQNSLL-KYLGRI--HTFEEFLENYKLARKLGFNNINVDLM--FG  159 (374)
T ss_pred             CCEEEEEeCCCcCCHHHHHHHHHcCCCEEEEECccCCHHHH-HHcCCC--CCHHHHHHHHHHHHHcCCCcEEEEee--cC
Confidence            34555444 2   34567888889999888754 3344333 344541  1234455677888999986 665565  66


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 015894          239 CPVEGMVPPSKVAYVSKQLYDMGCSEISL  267 (398)
Q Consensus       239 ~~~~~r~~~~~l~~~a~~l~~~Gad~I~L  267 (398)
                      .|..   +.+.+.+.++.+.++|++.|.+
T Consensus       160 lPgq---t~e~~~~~l~~~~~l~~~~is~  185 (374)
T PRK05799        160 LPNQ---TLEDWKETLEKVVELNPEHISC  185 (374)
T ss_pred             CCCC---CHHHHHHHHHHHHhcCCCEEEE
Confidence            6654   6788888999999999988755

>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase

Probab=92.78  E-value=9.3  Score=38.66  Aligned_cols=176  Identities=16%  Similarity=0.204  Sum_probs=107.4

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEecCC-----CCCc------cc-CCC--CHHHH----------HHHHH-h--ccCCcEE
Q 015894          117 PAVVKVELIKLLVSSGLAVVEATSFV-----SPKW------VP-QLA--DAKDV----------MAAIQ-N--VEGARFP  169 (398)
Q Consensus       117 ~~~~k~~ia~~L~~aGv~~IEvG~~~-----~~~~------~p-~~~--D~~~v----------~~~i~-~--~~~~~l~  169 (398)
                      +.+.-.++++.-.++|.|.|=.=.+.     .+..      .+ ...  +.-++          .+.+. .  -.++.+.
T Consensus        14 dl~~A~~lI~~A~~aGadaVKfQt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~e~~~~L~~~~~~~Gi~~~   93 (329)
T TIGR03569        14 SLELAKKLVDAAAEAGADAVKFQTFKAEDLVSKNAPKAEYQKINTGAEESQLEMLKKLELSEEDHRELKEYCESKGIEFL   93 (329)
T ss_pred             cHHHHHHHHHHHHHhCCCEEEeeeCCHHHhhCcccccccccccCCcCCCcHHHHHHHhCCCHHHHHHHHHHHHHhCCcEE
Confidence            56677888888899999988774321     1110      00 000  00111          11111 1  1233333


Q ss_pred             EEeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHH
Q 015894          170 VLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSK  249 (398)
Q Consensus       170 ~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~  249 (398)
                      .=......++...+.|++.+.|...  +.              .+ ..+++++.+.|.+|-  ++       .+..+.++
T Consensus        94 stpfd~~svd~l~~~~v~~~KIaS~--~~--------------~n-~pLL~~~A~~gkPvi--lS-------tGmatl~E  147 (329)
T TIGR03569        94 STPFDLESADFLEDLGVPRFKIPSG--EI--------------TN-APLLKKIARFGKPVI--LS-------TGMATLEE  147 (329)
T ss_pred             EEeCCHHHHHHHHhcCCCEEEECcc--cc--------------cC-HHHHHHHHhcCCcEE--EE-------CCCCCHHH
Confidence            3334677888888889998887422  11              11 245566667798875  33       23468899


Q ss_pred             HHHHHHHHHhCCCC--EEEE--ccCcCcCCHHHHHH--HHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          250 VAYVSKQLYDMGCS--EISL--GDTIGVGTPGTVIP--MLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       250 l~~~a~~l~~~Gad--~I~L--~DT~G~~~P~~v~~--lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      +...++.+.+.|.+  .|.|  |= .++-+|..-.+  .|..+++.++ .+|++=-|- .|  ...+++|+..||++|+-
T Consensus       148 i~~Av~~i~~~G~~~~~i~llhC~-s~YP~~~~~~nL~~I~~Lk~~f~-~pVG~SdHt-~G--~~~~~aAvalGA~iIEk  222 (329)
T TIGR03569       148 IEAAVGVLRDAGTPDSNITLLHCT-TEYPAPFEDVNLNAMDTLKEAFD-LPVGYSDHT-LG--IEAPIAAVALGATVIEK  222 (329)
T ss_pred             HHHHHHHHHHcCCCcCcEEEEEEC-CCCCCCcccCCHHHHHHHHHHhC-CCEEECCCC-cc--HHHHHHHHHcCCCEEEe
Confidence            99999999999986  2555  63 45555544333  4677888886 689985554 34  57779999999998864

This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.

>PRK08599 coproporphyrinogen III oxidase; Provisional

Probab=92.75  E-value=4.4  Score=41.25  Aligned_cols=108  Identities=9%  Similarity=0.039  Sum_probs=68.7

Q ss_pred             HHHHHHHHHhc----cCCcEEEEeC----CHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHh
Q 015894          153 AKDVMAAIQNV----EGARFPVLTP----NLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARE  224 (398)
Q Consensus       153 ~~~v~~~i~~~----~~~~l~~l~~----n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~  224 (398)
                      .+++++.+++.    +.+++++-++    +.+.++...++|+..|.+-+-.-+-..-..+++.  ...+.+.++++.+++
T Consensus        70 l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS~~~~~l~~l~r~--~~~~~~~~~i~~l~~  147 (377)
T PRK08599         70 LERLLTAIHRNLPLSGLEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQTFNDELLKKIGRT--HNEEDVYEAIANAKK  147 (377)
T ss_pred             HHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCC--CCHHHHHHHHHHHHH
Confidence            34445555432    2235555443    3456788889999998886544332223344442  234556677899999


Q ss_pred             CCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 015894          225 LSIP-VRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL  267 (398)
Q Consensus       225 ~G~~-v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L  267 (398)
                      .|+. +.+.++  +|.|..   +.+.+.+.++.+.+++++.|.+
T Consensus       148 ~g~~~v~~dli--~GlPgq---t~~~~~~~l~~~~~l~~~~i~~  186 (377)
T PRK08599        148 AGFDNISIDLI--YALPGQ---TIEDFKESLAKALALDIPHYSA  186 (377)
T ss_pred             cCCCcEEEeee--cCCCCC---CHHHHHHHHHHHHccCCCEEee
Confidence            9987 555554  676754   5778888888899999987644

>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative

Probab=92.63  E-value=9.3  Score=36.69  Aligned_cols=102  Identities=14%  Similarity=0.112  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCC
Q 015894          212 LIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVP  291 (398)
Q Consensus       212 l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p  291 (398)
                      .+.+.++++.+++.+.+|.+-+-.     .   .+.....++++.+.++|++.|.+-... ...|.--.+.|+.+++.++
T Consensus       120 p~~l~~iv~av~~~~~PVsvKiR~-----~---~~~~~~~~~a~~l~~aGad~i~Vd~~~-~g~~~a~~~~I~~i~~~~~  190 (231)
T TIGR00736       120 KELLKEFLTKMKELNKPIFVKIRG-----N---CIPLDELIDALNLVDDGFDGIHVDAMY-PGKPYADMDLLKILSEEFN  190 (231)
T ss_pred             HHHHHHHHHHHHcCCCcEEEEeCC-----C---CCcchHHHHHHHHHHcCCCEEEEeeCC-CCCchhhHHHHHHHHHhcC
Confidence            345667788888778877654441     1   133467789999999999999883222 1223345678888888775


Q ss_pred             CCeEEEEeCCccchHHHHHHHHHHhCCCEEeecc
Q 015894          292 VDKLAVHFHDTYGQALSNILASLQMGISTVDSSV  325 (398)
Q Consensus       292 ~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv  325 (398)
                      .+||--   |.-=....-++..+++||+.|-.+=
T Consensus       191 ~ipIIg---NGgI~s~eda~e~l~~GAd~VmvgR  221 (231)
T TIGR00736       191 DKIIIG---NNSIDDIESAKEMLKAGADFVSVAR  221 (231)
T ss_pred             CCcEEE---ECCcCCHHHHHHHHHhCCCeEEEcH
Confidence            334322   1111223556677778998886554

Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.

>PRK14338 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=92.62  E-value=4  Score=42.96  Aligned_cols=144  Identities=16%  Similarity=0.246  Sum_probs=85.4

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCC-CCCc--ccCCCCHHHHHHHHHhccCC-cE--EEEeCC---HhhHHHHHHc-
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFV-SPKW--VPQLADAKDVMAAIQNVEGA-RF--PVLTPN---LKGFEAAVAA-  184 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~-~~~~--~p~~~D~~~v~~~i~~~~~~-~l--~~l~~n---~~~ie~a~~~-  184 (398)
                      ..+.++.++.++.|.+.|++.|.+.... ....  .|...+..++++.+.+.++. ++  ...-+.   .+-++...+. 
T Consensus       183 sr~~e~Il~ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~l~~Ll~~l~~~~gi~~ir~~~~~p~~i~~ell~~l~~~~  262 (459)
T PRK14338        183 SRPLAEIVEEVRRIAARGAKEITLLGQIVDSYGHDLPGRPDLADLLEAVHEIPGLERLRFLTSHPAWMTDRLIHAVARLP  262 (459)
T ss_pred             cCCHHHHHHHHHHHHHCCCeEEEEeeecCCCcccccCChHHHHHHHHHHHhcCCcceEEEEecChhhcCHHHHHHHhccc
Confidence            4788999999999999999988775321 1100  01112345555555554443 23  222232   2334555554 


Q ss_pred             -CCCEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC
Q 015894          185 -GAKEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM  260 (398)
Q Consensus       185 -Gv~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~  260 (398)
                       |...+++-+ +.|+--++. +++.  ...+.+.++++.+++.  |+.+.++++  +|.|.+   +.+.+.+.++.+.+.
T Consensus       263 ~~~~~v~lglQSgsd~vLk~-m~R~--~t~e~~~~~i~~lr~~~pgi~i~~d~I--vG~PgE---T~ed~~~ti~~l~~l  334 (459)
T PRK14338        263 KCCPHINLPVQAGDDEVLKR-MRRG--YTVARYRELIARIREAIPDVSLTTDII--VGHPGE---TEEQFQRTYDLLEEI  334 (459)
T ss_pred             ccccceecCcccCCHHHHHh-ccCC--CCHHHHHHHHHHHHHhCCCCEEEEEEE--EECCCC---CHHHHHHHHHHHHHc
Confidence             467777744 455543332 4432  2344555667777777  676766666  676765   567888888888888


Q ss_pred             CCCEEE
Q 015894          261 GCSEIS  266 (398)
Q Consensus       261 Gad~I~  266 (398)
                      +.+.+.
T Consensus       335 ~~~~v~  340 (459)
T PRK14338        335 RFDKVH  340 (459)
T ss_pred             CCCEeE
Confidence            887653

>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated

Probab=92.57  E-value=2  Score=43.41  Aligned_cols=38  Identities=21%  Similarity=0.267  Sum_probs=32.3

Q ss_pred             CccccCccCCCCCCCccchhhhhhhccCCCCccEEEeCCCcccCC
Q 015894           66 NGYLSKAHYSSSCTDNSTKDLTSKLLGRVPGFVKIVEVGPRDGLQ  110 (398)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~I~i~D~TLRDG~Q  110 (398)
                      ++|..+++|+++    ++..++..+...   .|..+++|..+|..
T Consensus        14 G~q~~~~~f~~~----~~~~i~~~L~~a---Gv~~IEvg~~~g~g   51 (337)
T PRK08195         14 GMHAVRHQYTLE----QVRAIARALDAA---GVPVIEVTHGDGLG   51 (337)
T ss_pred             cCcCCCCccCHH----HHHHHHHHHHHc---CCCEEEeecCCCCC
Confidence            678889999999    888888888865   68899999999865

>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa

Probab=92.56  E-value=1.9  Score=42.47  Aligned_cols=126  Identities=16%  Similarity=0.073  Sum_probs=76.9

Q ss_pred             CCHhhHHHHHHcCCCEEEEeccC-chHHHhhhcCCCHHHHHHHHHHHHHHHHh-CCCcEEEEEeeeecCCCCCCCCHHHH
Q 015894          173 PNLKGFEAAVAAGAKEVAIFASA-SESFSKSNINCTIEDSLIRYRDVALAARE-LSIPVRGYLSCVVGCPVEGMVPPSKV  250 (398)
Q Consensus       173 ~n~~~ie~a~~~Gv~~v~i~~~~-Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~-~G~~v~~~l~~~fg~~~~~r~~~~~l  250 (398)
                      -|.++.+.|-++|+-.|.+.-.+ +|...+  =+.-|-+..+.+    +..|+ -.++|.+-+            -..+ 
T Consensus        16 ~~~~qa~~ae~aga~~v~~~~~~~~~~~~~--~~v~R~~~~~~I----~~Ik~~V~iPVIGi~------------K~~~-   76 (283)
T cd04727          16 TNAEQARIAEEAGAVAVMALERVPADIRAA--GGVARMADPKMI----KEIMDAVSIPVMAKV------------RIGH-   76 (283)
T ss_pred             CCHHHHHHHHHcCceEEeeeccCchhhhhc--CCeeecCCHHHH----HHHHHhCCCCeEEee------------ehhH-
Confidence            45666667777887555543222 343221  122222223332    22232 256664311            1233 


Q ss_pred             HHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccC
Q 015894          251 AYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGL  328 (398)
Q Consensus       251 ~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~Gl  328 (398)
                      ..=++.+.++|+|.|   |-....+|  ..+++..+|+.+ +.+|-.-+-+     +..++.|+++|+++|-+|+.|.
T Consensus        77 ~~Ea~~L~eaGvDiI---DaT~r~rP--~~~~~~~iK~~~-~~l~MAD~st-----leEal~a~~~Gad~I~TTl~gy  143 (283)
T cd04727          77 FVEAQILEALGVDMI---DESEVLTP--ADEEHHIDKHKF-KVPFVCGARN-----LGEALRRISEGAAMIRTKGEAG  143 (283)
T ss_pred             HHHHHHHHHcCCCEE---eccCCCCc--HHHHHHHHHHHc-CCcEEccCCC-----HHHHHHHHHCCCCEEEecCCCC
Confidence            344778999999999   87777788  688999999888 4444433322     5788999999999999999843

Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.

>PRK05581 ribulose-phosphate 3-epimerase; Validated

Probab=92.53  E-value=8.8  Score=35.56  Aligned_cols=174  Identities=17%  Similarity=0.128  Sum_probs=95.5

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcE--EEEeCC-HhhHHHHHHcCCCEEEE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARF--PVLTPN-LKGFEAAVAAGAKEVAI  191 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l--~~l~~n-~~~ie~a~~~Gv~~v~i  191 (398)
                      .++...-.+.++.+.+.|++.|+++.-.. .+.|...-..+..+.++......+  ..++.. .+.++.+.++|++.|.+
T Consensus        12 ~~~~~~~~~~~~~~~~~G~~~i~l~~~d~-~~~~~~~~~~~~~~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~g~d~v~v   90 (220)
T PRK05581         12 SADFARLGEEVKAVEAAGADWIHVDVMDG-HFVPNLTIGPPVVEAIRKVTKLPLDVHLMVENPDRYVPDFAKAGADIITF   90 (220)
T ss_pred             cCCHHHHHHHHHHHHHcCCCEEEEeCccC-CcCCCcCcCHHHHHHHHhcCCCcEEEEeeeCCHHHHHHHHHHcCCCEEEE
Confidence            35556667899999999999999964211 112221111233444443222233  233333 34677888999999777


Q ss_pred             eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----
Q 015894          192 FASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL----  267 (398)
Q Consensus       192 ~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L----  267 (398)
                      ....++                .....++.+++.|+.+...+.     |.   ++.+.+..+.     .++|.|.+    
T Consensus        91 h~~~~~----------------~~~~~~~~~~~~~~~~g~~~~-----~~---t~~e~~~~~~-----~~~d~i~~~~~~  141 (220)
T PRK05581         91 HVEASE----------------HIHRLLQLIKSAGIKAGLVLN-----PA---TPLEPLEDVL-----DLLDLVLLMSVN  141 (220)
T ss_pred             eeccch----------------hHHHHHHHHHHcCCEEEEEEC-----CC---CCHHHHHHHH-----hhCCEEEEEEEC
Confidence            654322                223457888899987653221     11   2333333321     23564433    


Q ss_pred             ccCcCcCCHHHHHHHHHHHHhhCCC----CeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894          268 GDTIGVGTPGTVIPMLEAVLDAVPV----DKLAVHFHDTYGQALSNILASLQMGISTVD  322 (398)
Q Consensus       268 ~DT~G~~~P~~v~~lv~~l~~~~p~----~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD  322 (398)
                      +-+.|...+....+.++.+++..+.    .++.+    +-|.-..|.-.+.++|++.|=
T Consensus       142 ~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v----~GGI~~~nv~~l~~~GaD~vv  196 (220)
T PRK05581        142 PGFGGQKFIPEVLEKIRELRKLIDERGLDILIEV----DGGINADNIKECAEAGADVFV  196 (220)
T ss_pred             CCCCcccccHHHHHHHHHHHHHHHhcCCCceEEE----ECCCCHHHHHHHHHcCCCEEE
Confidence            2233433344556666666654332    12222    348888888888889998653

>PRK13813 orotidine 5'-phosphate decarboxylase; Provisional

Probab=92.51  E-value=0.76  Score=42.92  Aligned_cols=171  Identities=12%  Similarity=0.017  Sum_probs=92.4

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcE--E-EEeCC-H-hhHHHHHHcCCCEEEE
Q 015894          117 PAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARF--P-VLTPN-L-KGFEAAVAAGAKEVAI  191 (398)
Q Consensus       117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l--~-~l~~n-~-~~ie~a~~~Gv~~v~i  191 (398)
                      +.++-+++++.+... +..+|+|.+.-..+      ..++++.+++.....+  - +.+.+ . .-++.+.+.|+|.|.+
T Consensus        14 ~~~~~~~~~~~~~~~-~~~vk~g~~l~~~~------G~~~v~~ir~~~~i~~D~k~~di~~~~~~~~~~~~~~gad~vtv   86 (215)
T PRK13813         14 DRERALKIAEELDDY-VDAIKVGWPLVLAS------GLGIIEELKRYAPVIADLKVADIPNTNRLICEAVFEAGAWGIIV   86 (215)
T ss_pred             CHHHHHHHHHhcccc-CCEEEEcHHHHHhh------CHHHHHHHHhcCCEEEEeeccccHHHHHHHHHHHHhCCCCEEEE
Confidence            455566677666443 57899996421111      1244555654332111  1 11222 2 2347888999998887


Q ss_pred             eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCc
Q 015894          192 FASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTI  271 (398)
Q Consensus       192 ~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~  271 (398)
                      ..-...               +.+..+++.+++.|..+.+.+...  .+.....-.+++..++....+.|.+...+.   
T Consensus        87 h~e~g~---------------~~l~~~i~~~~~~g~~~~v~~~~~--~~~~~~~~~~~~~~v~~m~~e~G~~g~~~~---  146 (215)
T PRK13813         87 HGFTGR---------------DSLKAVVEAAAESGGKVFVVVEMS--HPGALEFIQPHADKLAKLAQEAGAFGVVAP---  146 (215)
T ss_pred             cCcCCH---------------HHHHHHHHHHHhcCCeEEEEEeCC--CCCCCCCHHHHHHHHHHHHHHhCCCeEEEC---
Confidence            554221               235567888999999876544432  121111113456666777778898765422   


Q ss_pred             CcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHH--HHHHHHHhCCCEEee
Q 015894          272 GVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALS--NILASLQMGISTVDS  323 (398)
Q Consensus       272 G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~A--NalaAl~aGa~~VD~  323 (398)
                           ....+.++.+++..+. .+.+   =|-|....  |.-.++++|++.+-.
T Consensus       147 -----~~~~~~i~~l~~~~~~-~~~i---vdgGI~~~g~~~~~~~~aGad~iV~  191 (215)
T PRK13813        147 -----ATRPERVRYIRSRLGD-ELKI---ISPGIGAQGGKAADAIKAGADYVIV  191 (215)
T ss_pred             -----CCcchhHHHHHHhcCC-CcEE---EeCCcCCCCCCHHHHHHcCCCEEEE
Confidence                 1222344566665543 1111   23344433  477889999997743

>TIGR01212 radical SAM protein, TIGR01212 family

Probab=92.48  E-value=5.4  Score=39.55  Aligned_cols=51  Identities=22%  Similarity=0.243  Sum_probs=40.3

Q ss_pred             HHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 015894          212 LIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL  267 (398)
Q Consensus       212 l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L  267 (398)
                      .+.+.++++.+++.|+.+.++++  +|.|..   +.+.+.+.++.+.+++++.|.+
T Consensus       162 ~~~~~~ai~~l~~~gi~v~~~lI--~GlPge---t~e~~~~t~~~l~~l~~d~i~i  212 (302)
T TIGR01212       162 FACYVDAVKRARKRGIKVCSHVI--LGLPGE---DREEMMETAKIVSLLDVDGIKI  212 (302)
T ss_pred             HHHHHHHHHHHHHcCCEEEEeEE--ECCCCC---CHHHHHHHHHHHHhcCCCEEEE
Confidence            34556788899999999887776  677754   5688888899999999987764

This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=92.40  E-value=7.3  Score=34.32  Aligned_cols=134  Identities=19%  Similarity=0.196  Sum_probs=79.2

Q ss_pred             hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 015894          176 KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSK  255 (398)
Q Consensus       176 ~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~  255 (398)
                      +.++.+.+.|++.+.+-.......  ......+       ..+....+..+..+.+.+...    +    ..+.+...++
T Consensus        16 ~~~~~~~~~G~~~v~~~~~~~~~~--~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~----~----~~~~~~~~a~   78 (200)
T cd04722          16 ELAKAAAEAGADAIIVGTRSSDPE--EAETDDK-------EVLKEVAAETDLPLGVQLAIN----D----AAAAVDIAAA   78 (200)
T ss_pred             HHHHHHHcCCCCEEEEeeEEECcc--cCCCccc-------cHHHHHHhhcCCcEEEEEccC----C----chhhhhHHHH
Confidence            456677778888877754322211  0000000       112223334566665444321    1    1222333367


Q ss_pred             HHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCC
Q 015894          256 QLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGG  330 (398)
Q Consensus       256 ~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGe  330 (398)
                      .+.++|+|.|.+....+.. |....++++.+++.+|+.++.+=+|.+.....+.   ..+.|++.|...-..-+.
T Consensus        79 ~~~~~g~d~v~l~~~~~~~-~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~~~~~---~~~~g~d~i~~~~~~~~~  149 (200)
T cd04722          79 AARAAGADGVEIHGAVGYL-AREDLELIRELREAVPDVKVVVKLSPTGELAAAA---AEEAGVDEVGLGNGGGGG  149 (200)
T ss_pred             HHHHcCCCEEEEeccCCcH-HHHHHHHHHHHHHhcCCceEEEEECCCCccchhh---HHHcCCCEEEEcCCcCCC
Confidence            8889999999999988765 8889999999999887667666666554433221   567899998766544333

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=92.37  E-value=4.7  Score=42.96  Aligned_cols=160  Identities=16%  Similarity=0.168  Sum_probs=90.4

Q ss_pred             HHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh-ccCCcEEE-EeCCHhhHHHHHHcCCCEEEEeccC-ch
Q 015894          121 KVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN-VEGARFPV-LTPNLKGFEAAVAAGAKEVAIFASA-SE  197 (398)
Q Consensus       121 k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~-~~~~~l~~-l~~n~~~ie~a~~~Gv~~v~i~~~~-Sd  197 (398)
                      -++.++.|.++|++.|++......     .....+.++.+++ .|+..+.+ -+-+.++.+.++++|+|.|.+-++. |-
T Consensus       242 ~~~~~~~l~~ag~d~i~id~a~G~-----s~~~~~~i~~ik~~~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg~g~Gs~  316 (495)
T PTZ00314        242 DIERAAALIEAGVDVLVVDSSQGN-----SIYQIDMIKKLKSNYPHVDIIAGNVVTADQAKNLIDAGADGLRIGMGSGSI  316 (495)
T ss_pred             HHHHHHHHHHCCCCEEEEecCCCC-----chHHHHHHHHHHhhCCCceEEECCcCCHHHHHHHHHcCCCEEEECCcCCcc
Confidence            388999999999999999753110     0112345555553 35544433 2346789999999999999874321 10


Q ss_pred             HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHH
Q 015894          198 SFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPG  277 (398)
Q Consensus       198 ~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~  277 (398)
                      -..+...++... .+..+.++.+.+++.|+.+-         ++.+-.++.++   ++ +.++||+.+.+.-..  ..| 
T Consensus       317 ~~t~~~~~~g~p-~~~ai~~~~~~~~~~~v~vI---------adGGi~~~~di---~k-Ala~GA~~Vm~G~~~--a~~-  379 (495)
T PTZ00314        317 CITQEVCAVGRP-QASAVYHVARYARERGVPCI---------ADGGIKNSGDI---CK-ALALGADCVMLGSLL--AGT-  379 (495)
T ss_pred             cccchhccCCCC-hHHHHHHHHHHHhhcCCeEE---------ecCCCCCHHHH---HH-HHHcCCCEEEECchh--ccc-
Confidence            000001122222 23455677788888887653         24454455443   33 345999998876531  111 


Q ss_pred             HHHHHHHHHHhhCCCCeE---EEEeCCccchHHHHHHH
Q 015894          278 TVIPMLEAVLDAVPVDKL---AVHFHDTYGQALSNILA  312 (398)
Q Consensus       278 ~v~~lv~~l~~~~p~~~l---~~H~Hnd~GlA~ANala  312 (398)
                                .+.|...+   +-....-+|||...+..
T Consensus       380 ----------~e~~~~~~~~~g~~~k~yrGm~s~~a~~  407 (495)
T PTZ00314        380 ----------EEAPGEYFFKDGVRLKVYRGMGSLEAML  407 (495)
T ss_pred             ----------cccCCceeeeCCeEEEEEeccchHHHhh
Confidence                      12343211   23445578998766554

>TIGR01211 ELP3 histone acetyltransferase, ELP3 family

Probab=92.33  E-value=16  Score=39.27  Aligned_cols=110  Identities=10%  Similarity=0.102  Sum_probs=71.3

Q ss_pred             HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHH
Q 015894          175 LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVS  254 (398)
Q Consensus       175 ~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a  254 (398)
                      .+.++...+.|+.+|.+-+-.-+-.....+|+.  ...+.+.++++.+|+.|+.+.+.++  +|.|..   +++...+-+
T Consensus       206 ~e~L~~L~~~G~~rVslGVQS~~d~VL~~inRg--ht~~~v~~Ai~~lr~~G~~v~~~LM--~GLPgq---t~e~~~~t~  278 (522)
T TIGR01211       206 EEHIDRMLKLGATRVELGVQTIYNDILERTKRG--HTVRDVVEATRLLRDAGLKVVYHIM--PGLPGS---SFERDLEMF  278 (522)
T ss_pred             HHHHHHHHHcCCCEEEEECccCCHHHHHHhCCC--CCHHHHHHHHHHHHHcCCeEEEEee--cCCCCC---CHHHHHHHH
Confidence            466888899999988875433222222223331  2234445677889999998877776  677754   466667767


Q ss_pred             HHHHh---CCCCEEEEccCc-------------Cc---CCHHHHHHHHHHHHhhCC
Q 015894          255 KQLYD---MGCSEISLGDTI-------------GV---GTPGTVIPMLEAVLDAVP  291 (398)
Q Consensus       255 ~~l~~---~Gad~I~L~DT~-------------G~---~~P~~v~~lv~~l~~~~p  291 (398)
                      +.+.+   .++|.|.|=-+.             |-   .++++..+++..+.+.+|
T Consensus       279 ~~l~~~~~l~pD~Ikiypl~V~~gT~L~~~~~~G~y~p~t~ee~v~l~~~~~~~lp  334 (522)
T TIGR01211       279 REIFEDPRFKPDMLKIYPTLVTRGTELYELWKRGEYKPYTTEEAVELIVEIKRMMP  334 (522)
T ss_pred             HHHHhccCCCcCEEEEecceeeCCCHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCC
Confidence            77764   889987765522             32   345667777777777787

The Saccharomyces cerevisiae member YPL086C has been characterized in vitro as an N-terminal acetyltransferase for all four core histones. It is a component of the RNA polymerase II holoenzyme, designated Elp3p for Elongator Protein 3. Members of this family are found in eukaryotes and archaea. These proteins are part of the larger set of GNAT acetyltransferases.

>PRK05904 coproporphyrinogen III oxidase; Provisional

Probab=92.32  E-value=7.6  Score=39.44  Aligned_cols=106  Identities=10%  Similarity=0.100  Sum_probs=67.6

Q ss_pred             HHHHHHHHh-c-cCCcEEEEe-C---CHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC
Q 015894          154 KDVMAAIQN-V-EGARFPVLT-P---NLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSI  227 (398)
Q Consensus       154 ~~v~~~i~~-~-~~~~l~~l~-~---n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~  227 (398)
                      +++++.+++ + ++..+++-+ |   +.+.++...++|+.+|.+-+-.-+-..-..+|+.  ...+.+.++++.+++.|+
T Consensus        76 ~~ll~~i~~~~~~~~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS~~d~vL~~l~R~--~~~~~~~~ai~~lr~~G~  153 (353)
T PRK05904         76 DILLSTIKPYVDNNCEFTIECNPELITQSQINLLKKNKVNRISLGVQSMNNNILKQLNRT--HTIQDSKEAINLLHKNGI  153 (353)
T ss_pred             HHHHHHHHHhcCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCC--CCHHHHHHHHHHHHHcCC
Confidence            344445543 2 234555544 3   3456788889999998885543332333345542  223455677889999998


Q ss_pred             c-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEE
Q 015894          228 P-VRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEIS  266 (398)
Q Consensus       228 ~-v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~  266 (398)
                      . +.+.++  +|.|..   +.+.+.+.++.+.+.+++.|.
T Consensus       154 ~~v~~dlI--~GlPgq---t~e~~~~tl~~~~~l~p~~is  188 (353)
T PRK05904        154 YNISCDFL--YCLPIL---KLKDLDEVFNFILKHKINHIS  188 (353)
T ss_pred             CcEEEEEe--ecCCCC---CHHHHHHHHHHHHhcCCCEEE
Confidence            6 766666  666753   678888888888999988663

>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF)

Probab=92.32  E-value=10  Score=35.93  Aligned_cols=202  Identities=16%  Similarity=0.053  Sum_probs=101.6

Q ss_pred             HHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEE--eCCHhhHHHHHHcCCCEEEEeccCc
Q 015894          119 VVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVL--TPNLKGFEAAVAAGAKEVAIFASAS  196 (398)
Q Consensus       119 ~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l--~~n~~~ie~a~~~Gv~~v~i~~~~S  196 (398)
                      .+-.++++.|.+.|++.|=+.-.......+ -.+. ++++.+++..++++.+-  +++.++++..++.|++.|.+-..  
T Consensus        27 ~d~~~~a~~~~~~G~~~i~i~d~~~~~~~~-~~~~-~~i~~i~~~~~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig~~--  102 (243)
T cd04731          27 GDPVELAKRYNEQGADELVFLDITASSEGR-ETML-DVVERVAEEVFIPLTVGGGIRSLEDARRLLRAGADKVSINSA--  102 (243)
T ss_pred             CCHHHHHHHHHHCCCCEEEEEcCCcccccC-cccH-HHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCceEEECch--
Confidence            366789999999999955554322110000 0122 34444544334444443  36788999999999998765321  


Q ss_pred             hHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEeee--------ecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 015894          197 ESFSKSNINCTIEDSLIRYRDVALAARELSI-PVRGYLSCV--------VGCPVEGMVPPSKVAYVSKQLYDMGCSEISL  267 (398)
Q Consensus       197 d~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~-~v~~~l~~~--------fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L  267 (398)
                       .+          +..+.+.++++   +.+. .+.+.+-.-        +-.......+.....++++.+.+.|++.|.+
T Consensus       103 -~~----------~~p~~~~~i~~---~~~~~~i~~~ld~k~~~~~~~~v~~~~~~~~~~~~~~~~~~~l~~~G~d~i~v  168 (243)
T cd04731         103 -AV----------ENPELIREIAK---RFGSQCVVVSIDAKRRGDGGYEVYTHGGRKPTGLDAVEWAKEVEELGAGEILL  168 (243)
T ss_pred             -hh----------hChHHHHHHHH---HcCCCCEEEEEEeeecCCCceEEEEcCCceecCCCHHHHHHHHHHCCCCEEEE
Confidence             11          01122223333   3332 122222110        0000000112345567788899999999888


Q ss_pred             --ccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHh-CCCEEeeccccCCCCCCCCCCCCCccHH
Q 015894          268 --GDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQM-GISTVDSSVSGLGGCPYAKGASGNVATE  344 (398)
Q Consensus       268 --~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~a-Ga~~VD~Sv~GlGecp~a~graGNa~lE  344 (398)
                        -+..|..... -.++++.+++..+ +|+-.-+--..   ...+..+++. ||+.|=+   |-.=      -.|..+++
T Consensus       169 ~~i~~~g~~~g~-~~~~i~~i~~~~~-~pvia~GGi~~---~~di~~~l~~~g~dgv~v---g~al------~~~~~~~~  234 (243)
T cd04731         169 TSMDRDGTKKGY-DLELIRAVSSAVN-IPVIASGGAGK---PEHFVEAFEEGGADAALA---ASIF------HFGEYTIA  234 (243)
T ss_pred             eccCCCCCCCCC-CHHHHHHHHhhCC-CCEEEeCCCCC---HHHHHHHHHhCCCCEEEE---eHHH------HcCCCCHH
Confidence              4444443332 3456777776553 45555442221   2334444554 6664422   2111      24556677


Q ss_pred             HHHHHHHh
Q 015894          345 DVVYMLNG  352 (398)
Q Consensus       345 ~vv~~L~~  352 (398)
                      ++...|++
T Consensus       235 ~~~~~~~~  242 (243)
T cd04731         235 ELKEYLAE  242 (243)
T ss_pred             HHHHHHhh
Confidence            77666643

Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.

>COG1830 FbaB DhnA-type fructose-1,6-bisphosphate aldolase and related enzymes [Carbohydrate transport and metabolism]

Probab=92.30  E-value=3.1  Score=40.75  Aligned_cols=180  Identities=19%  Similarity=0.234  Sum_probs=104.9

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCC-CHHHHHHHHHhccCCcEEEEeC---C---HhhHHHHHHcCCCEEE
Q 015894          118 AVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLA-DAKDVMAAIQNVEGARFPVLTP---N---LKGFEAAVAAGAKEVA  190 (398)
Q Consensus       118 ~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~-D~~~v~~~i~~~~~~~l~~l~~---n---~~~ie~a~~~Gv~~v~  190 (398)
                      .++...+++.+.+.|.+.+-..........|... |...+   ++....   ..|.+   +   ...+|.|+..|++-|.
T Consensus        42 l~d~e~~v~~v~~~g~dav~~~~G~~~~~~~~y~~dvpli---vkl~~~---t~l~~~~~~~~~~~~ve~ai~lgadAV~  115 (265)
T COG1830          42 LEDPENIVAKVAEAGADAVAMTPGIARSVHRGYAHDVPLI---VKLNGS---TSLSPDPNDQVLVATVEDAIRLGADAVG  115 (265)
T ss_pred             ccCHHHHHHHHHhcCCCEEEecHhHHhhcCccccCCcCEE---EEeccc---cccCCCcccceeeeeHHHHHhCCCcEEE
Confidence            4444567888889999988886432111111111 11100   000000   01111   1   1257889999999665


Q ss_pred             E--eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCC--CCCHHHHHHHHHHHHhCCCCEEE
Q 015894          191 I--FASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEG--MVPPSKVAYVSKQLYDMGCSEIS  266 (398)
Q Consensus       191 i--~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~--r~~~~~l~~~a~~l~~~Gad~I~  266 (398)
                      +  ++. |+         +-.+.++.+.++++.|.++|+.+.. +++--|.-+..  ..+++.+...++...++|+|.|-
T Consensus       116 ~~Vy~G-se---------~e~~~i~~~~~v~~~a~~~Gmp~v~-~~YpRg~~~~~~~~~d~~~v~~aaRlaaelGADIiK  184 (265)
T COG1830         116 ATVYVG-SE---------TEREMIENISQVVEDAHELGMPLVA-WAYPRGPAIKDEYHRDADLVGYAARLAAELGADIIK  184 (265)
T ss_pred             EEEecC-Cc---------chHHHHHHHHHHHHHHHHcCCceEE-EEeccCCcccccccccHHHHHHHHHHHHHhcCCeEe
Confidence            4  333 11         2246889999999999999998752 33333322212  36778888889999999999875


Q ss_pred             EccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeC---CccchHHHHHHHHHHhCCCEEe
Q 015894          267 LGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFH---DTYGQALSNILASLQMGISTVD  322 (398)
Q Consensus       267 L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~H---nd~GlA~ANalaAl~aGa~~VD  322 (398)
                      ..=|   ..|+.+++.++.    .| +|+-+-+=   ++.--++.-.-+|+++|+..+.
T Consensus       185 ~~yt---g~~e~F~~vv~~----~~-vpVviaGG~k~~~~~~~l~~~~~ai~aGa~G~~  235 (265)
T COG1830         185 TKYT---GDPESFRRVVAA----CG-VPVVIAGGPKTETEREFLEMVTAAIEAGAMGVA  235 (265)
T ss_pred             ecCC---CChHHHHHHHHh----CC-CCEEEeCCCCCCChHHHHHHHHHHHHccCcchh
Confidence            4332   244555555554    34 34444332   2455677888888899887554

>PRK04165 acetyl-CoA decarbonylase/synthase complex subunit gamma; Provisional

Probab=92.29  E-value=10  Score=39.99  Aligned_cols=122  Identities=16%  Similarity=0.212  Sum_probs=84.2

Q ss_pred             CCHHHHHHHHHHH-----HhcC----CCEEEEecCCCCCcccCCCCHHHHHHHHHhc---cCCcEEEEeCCHhhHHHHHH
Q 015894          116 VPAVVKVELIKLL-----VSSG----LAVVEATSFVSPKWVPQLADAKDVMAAIQNV---EGARFPVLTPNLKGFEAAVA  183 (398)
Q Consensus       116 ~~~~~k~~ia~~L-----~~aG----v~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~~n~~~ie~a~~  183 (398)
                      ++.+...+-++.+     .+.|    .|.|.+++...        |++.+...++.+   .+..++.-+.+.+-++++++
T Consensus       102 l~~e~i~~r~~~~~~~~~~rvG~~~~AD~IaL~~~s~--------dp~~v~~~Vk~V~~~~dvPLSIDT~dpevleaAle  173 (450)
T PRK04165        102 MDDEEIDARLKKINNFQFERVGEILKLDMVALRNASG--------DPEKFAKAVKKVAETTDLPLILCSEDPAVLKAALE  173 (450)
T ss_pred             CChHHHHHHHHHhhcchHhhhcccccCCEEEEeCCCC--------CHHHHHHHHHHHHHhcCCCEEEeCCCHHHHHHHHH
Confidence            4556656666666     5667    99999997542        344455555533   35667667788899999999


Q ss_pred             cCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 015894          184 AGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCS  263 (398)
Q Consensus       184 ~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad  263 (398)
                      .|.+..-+..+++.               +++.++.+.|+++|..+.+  +    .+     +.+.+.++.+.+.++|..
T Consensus       174 agad~~plI~Sat~---------------dN~~~m~~la~~yg~pvVv--~----~~-----dl~~L~~lv~~~~~~GI~  227 (450)
T PRK04165        174 VVADRKPLLYAATK---------------ENYEEMAELAKEYNCPLVV--K----AP-----NLEELKELVEKLQAAGIK  227 (450)
T ss_pred             hcCCCCceEEecCc---------------chHHHHHHHHHHcCCcEEE--E----ch-----hHHHHHHHHHHHHHcCCC
Confidence            99998777766552               3455667788888887752  2    11     268888899999999997


Q ss_pred             EEEEccCc
Q 015894          264 EISLGDTI  271 (398)
Q Consensus       264 ~I~L~DT~  271 (398)
                      .|.|==..
T Consensus       228 dIILDPg~  235 (450)
T PRK04165        228 DLVLDPGT  235 (450)
T ss_pred             cEEECCCC
Confidence            77663333

>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain

Probab=92.28  E-value=6  Score=39.71  Aligned_cols=134  Identities=22%  Similarity=0.213  Sum_probs=81.4

Q ss_pred             HHHHHcCCCEEEEecc--------CchH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-C--CcEEEEEeeeecCCCCCCC
Q 015894          179 EAAVAAGAKEVAIFAS--------ASES--FSKSNINCTIEDSLIRYRDVALAAREL-S--IPVRGYLSCVVGCPVEGMV  245 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~--------~Sd~--~~~~~~~~s~~~~l~~~~~~v~~ak~~-G--~~v~~~l~~~fg~~~~~r~  245 (398)
                      +++.++|.|.|-|-..        +|+.  .....+|-+.++-.+...++++.+|+. |  +.+.+-++..-.  .....
T Consensus       161 ~~a~~aGfDgVei~~~~gyLl~qFlsp~~N~R~D~yGgsl~nr~rf~~eiv~aIR~~vG~d~~v~vri~~~~~--~~~g~  238 (336)
T cd02932         161 RRAVEAGFDVIEIHAAHGYLLHQFLSPLSNKRTDEYGGSLENRMRFLLEVVDAVRAVWPEDKPLFVRISATDW--VEGGW  238 (336)
T ss_pred             HHHHHcCCCEEEEccccccHHHHhcCCccCCCCcccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEEccccc--CCCCC
Confidence            4667899998887542        1221  334456778888888888888888865 3  344443442110  12335


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEccCcCcC--------CHHHHHHHHHHHHhhCCCCeEEE-EeCCccchHHHHHHHHHHh
Q 015894          246 PPSKVAYVSKQLYDMGCSEISLGDTIGVG--------TPGTVIPMLEAVLDAVPVDKLAV-HFHDTYGQALSNILASLQM  316 (398)
Q Consensus       246 ~~~~l~~~a~~l~~~Gad~I~L~DT~G~~--------~P~~v~~lv~~l~~~~p~~~l~~-H~Hnd~GlA~ANalaAl~a  316 (398)
                      +++...++++.+.++|+|.|.+.  .|..        .|....++.+.+++.++ +||.. -.-.+    ...+..+++.
T Consensus       239 ~~~e~~~ia~~Le~~gvd~iev~--~g~~~~~~~~~~~~~~~~~~~~~ir~~~~-iPVi~~G~i~t----~~~a~~~l~~  311 (336)
T cd02932         239 DLEDSVELAKALKELGVDLIDVS--SGGNSPAQKIPVGPGYQVPFAERIRQEAG-IPVIAVGLITD----PEQAEAILES  311 (336)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEC--CCCCCcccccCCCccccHHHHHHHHhhCC-CCEEEeCCCCC----HHHHHHHHHc
Confidence            78899999999999999998863  2211        12223456677777764 34432 22222    3556667777


Q ss_pred             C-CCEE
Q 015894          317 G-ISTV  321 (398)
Q Consensus       317 G-a~~V  321 (398)
                      | +|.|
T Consensus       312 g~aD~V  317 (336)
T cd02932         312 GRADLV  317 (336)
T ss_pred             CCCCee
Confidence            7 5654

YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.

>cd04739 DHOD_like Dihydroorotate dehydrogenase (DHOD) like proteins

Probab=92.25  E-value=3.2  Score=41.61  Aligned_cols=79  Identities=18%  Similarity=0.160  Sum_probs=55.7

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEE---c-----cCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHh
Q 015894          245 VPPSKVAYVSKQLYDMGCSEISL---G-----DTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQM  316 (398)
Q Consensus       245 ~~~~~l~~~a~~l~~~Gad~I~L---~-----DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~a  316 (398)
                      .+++.+.++++.+.++|+|.|.|   |     +-.|...+..+.++++.+++... +||.+-.--+......-+.++.++
T Consensus       109 ~~~~~~~~~a~~~~~~gad~iElN~s~~~~~~~~~g~~~~~~~~eiv~~v~~~~~-iPv~vKl~p~~~~~~~~a~~l~~~  187 (325)
T cd04739         109 VSAGGWVDYARQIEEAGADALELNIYALPTDPDISGAEVEQRYLDILRAVKSAVT-IPVAVKLSPFFSALAHMAKQLDAA  187 (325)
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEEeCCCCCCCCCcccchHHHHHHHHHHHHHhccC-CCEEEEcCCCccCHHHHHHHHHHc
Confidence            35788899999999999997644   1     33344445778899999998764 467776655555455566667789


Q ss_pred             CCCEEeec
Q 015894          317 GISTVDSS  324 (398)
Q Consensus       317 Ga~~VD~S  324 (398)
                      ||+.|..+
T Consensus       188 Gadgi~~~  195 (325)
T cd04739         188 GADGLVLF  195 (325)
T ss_pred             CCCeEEEE
Confidence            99977543

DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. This subgroup has the conserved FMN binding site, but lacks some catalytic residues and may therefore be inactive.

>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain

Probab=92.25  E-value=5.4  Score=40.36  Aligned_cols=136  Identities=20%  Similarity=0.110  Sum_probs=81.4

Q ss_pred             HHHHHHcCCCEEEEecc--------CchH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-CCc--EEEEEeeeecCCCCCC
Q 015894          178 FEAAVAAGAKEVAIFAS--------ASES--FSKSNINCTIEDSLIRYRDVALAAREL-SIP--VRGYLSCVVGCPVEGM  244 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~--------~Sd~--~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~~--v~~~l~~~fg~~~~~r  244 (398)
                      .++|.++|.|.|.|...        +|+.  +.+..+|-+.++-.+...++++.+|+. |..  |.+-++.. .. ..+.
T Consensus       143 A~~a~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~aIR~~vG~d~~v~iRi~~~-D~-~~~g  220 (353)
T cd02930         143 AALAREAGYDGVEIMGSEGYLINQFLAPRTNKRTDEWGGSFENRMRFPVEIVRAVRAAVGEDFIIIYRLSML-DL-VEGG  220 (353)
T ss_pred             HHHHHHcCCCEEEEecccchHHHHhcCCccCCCcCccCCCHHHHhHHHHHHHHHHHHHcCCCceEEEEeccc-cc-CCCC
Confidence            34667899999988542        2332  344456667777778888888888874 554  33223311 00 1123


Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEccCcCcC---C-------H-HHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHH
Q 015894          245 VPPSKVAYVSKQLYDMGCSEISLGDTIGVG---T-------P-GTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILAS  313 (398)
Q Consensus       245 ~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~---~-------P-~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaA  313 (398)
                      .+++...++++.+.++|+|.|.+  |.|..   .       | .....+.+.+++.++ +||..-.--+   ....+..+
T Consensus       221 ~~~~e~~~i~~~Le~~G~d~i~v--s~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~v~-iPVi~~G~i~---~~~~a~~~  294 (353)
T cd02930         221 STWEEVVALAKALEAAGADILNT--GIGWHEARVPTIATSVPRGAFAWATAKLKRAVD-IPVIASNRIN---TPEVAERL  294 (353)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEe--CCCcCCCCCccccccCCchhhHHHHHHHHHhCC-CCEEEcCCCC---CHHHHHHH
Confidence            57889999999999999999987  23321   1       1 113445667777664 3455433211   13556666


Q ss_pred             HHhC-CCEE
Q 015894          314 LQMG-ISTV  321 (398)
Q Consensus       314 l~aG-a~~V  321 (398)
                      ++.| +|.|
T Consensus       295 i~~g~~D~V  303 (353)
T cd02930         295 LADGDADMV  303 (353)
T ss_pred             HHCCCCChh
Confidence            7766 5544

DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi

>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]

Probab=92.24  E-value=5.9  Score=40.08  Aligned_cols=176  Identities=14%  Similarity=0.102  Sum_probs=111.0

Q ss_pred             CCCcccCCCC----CCCCCHHHHHHHHHHHHhcCCCEEEEecCC--CCCcccCCCCHHHHHHHHHhccCCcEEEEeC---
Q 015894          103 VGPRDGLQNE----KNIVPAVVKVELIKLLVSSGLAVVEATSFV--SPKWVPQLADAKDVMAAIQNVEGARFPVLTP---  173 (398)
Q Consensus       103 ~TLRDG~Q~~----~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~--~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~---  173 (398)
                      |+.-+|..+.    ...+..+.-++-.+...+.--+-+|+-...  .|-..|.+   .++.+.++.++++.+.++-.   
T Consensus       124 CSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlDGqGEP~lYP~l---~~lVqalk~~~~v~vVSmQTng~  200 (414)
T COG2100         124 CSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLDGQGEPLLYPHL---VDLVQALKEHKGVEVVSMQTNGV  200 (414)
T ss_pred             EeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEecCCCCCccchhH---HHHHHHHhcCCCceEEEEeeCce
Confidence            4555666554    245678888888888888878888885432  23333433   46677888888887766643   


Q ss_pred             --CHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHH
Q 015894          174 --NLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVA  251 (398)
Q Consensus       174 --n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~  251 (398)
                        +.+-++...++|+|+|.+.+.+=|.-....+---....++.+.++++++.+.|+.|-  ++-.+ -|   -++.++..
T Consensus       201 ~L~~~lv~eLeeAGLdRiNlSv~aLDpk~Ak~L~G~~dYdv~kvle~aE~i~~a~idvl--IaPv~-lP---G~ND~E~~  274 (414)
T COG2100         201 LLSKKLVDELEEAGLDRINLSVDALDPKLAKMLAGRKDYDVKKVLEVAEYIANAGIDVL--IAPVW-LP---GVNDDEMP  274 (414)
T ss_pred             eccHHHHHHHHHhCCceEEeecccCCHHHHHHhcCccccCHHHHHHHHHHHHhCCCCEE--Eeeee-cC---CcChHHHH
Confidence              456688889999999999876666543333322223346777788899999999875  33322 11   14567777


Q ss_pred             HHHHHHHhCCCC--------EEEEccCcCc----CCHHHHHHHHHHHH
Q 015894          252 YVSKQLYDMGCS--------EISLGDTIGV----GTPGTVIPMLEAVL  287 (398)
Q Consensus       252 ~~a~~l~~~Gad--------~I~L~DT~G~----~~P~~v~~lv~~l~  287 (398)
                      ++++.+.+.|+-        .-++.=-.|-    +.|....++.+.|+
T Consensus       275 ~iIe~A~~iGaGkk~p~lgiQkyipyk~GRkp~~~k~~~fkeFYrwLr  322 (414)
T COG2100         275 KIIEWAREIGAGKKWPPLGIQKYIPYKFGRKPVIAKVWPFKEFYRWLR  322 (414)
T ss_pred             HHHHHHHHhCCCCCCCCcceEEeeeecccCCccccccCcHHHHHHHHH
Confidence            888888877651        1244444442    44555555555554

>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants

Probab=92.24  E-value=5  Score=39.23  Aligned_cols=42  Identities=12%  Similarity=0.166  Sum_probs=19.0

Q ss_pred             HHHHHHHHHHHHhCCCCEEE-EccCcCcCCHHHHHHHHHHHHh
Q 015894          247 PSKVAYVSKQLYDMGCSEIS-LGDTIGVGTPGTVIPMLEAVLD  288 (398)
Q Consensus       247 ~~~l~~~a~~l~~~Gad~I~-L~DT~G~~~P~~v~~lv~~l~~  288 (398)
                      .+...++++.+.++|+|.+. ++=.....++.++.+.++.+.+
T Consensus        82 t~~~i~~a~~a~~~Gad~v~v~~P~~~~~s~~~l~~y~~~ia~  124 (289)
T PF00701_consen   82 TEEAIELARHAQDAGADAVLVIPPYYFKPSQEELIDYFRAIAD  124 (289)
T ss_dssp             HHHHHHHHHHHHHTT-SEEEEEESTSSSCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcCceEEEEeccccccchhhHHHHHHHHHHh
Confidence            44555555555555555432 2223333445555555555543

The enzyme catalyses the condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a ping-pong mechanism in which pyruvate binds to the enzyme by forming a Schiff-base with a lysine residue []. Three other proteins are structurally related to DHDPS and probably also act via a similar catalytic mechanism. These are Escherichia coli N-acetylneuraminate lyase (4.1.3.3 from EC) (gene nanA), which catalyzes the condensation of N-acetyl-D-mannosamine and pyruvate to form N-acetylneuraminate; Rhizobium meliloti (Sinorhizobium meliloti) protein mosA [], which is involved in the biosynthesis of the rhizopine 3-o-methyl-scyllo-inosamine; and E. coli hypothetical protein yjhH. The sequences of DHDPS from different sources are well-conserved. The structure takes the form of a homotetramer, in which 2 monomers are related by an approximate 2-fold symmetry []. Each monomer comprises 2 domains: an 8-fold alpha-/beta-barrel, and a C-terminal alpha-helical domain. The fold resembles that of N-acetylneuraminate lyase. The active site lysine is located in the barrel domain, and has access via 2 channels on the C-terminal side of the barrel.; GO: 0016829 lyase activity, 0008152 metabolic process; PDB: 3B4U_B 3S8H_A 3QZE_B 1XXX_F 3L21_F 3IRD_A 3A5F_B 3G0S_B 3DAQ_C 3UQN_A ....

>TIGR00089 RNA modification enzyme, MiaB family

Probab=92.21  E-value=9.1  Score=39.68  Aligned_cols=144  Identities=16%  Similarity=0.153  Sum_probs=88.4

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecC---CC-CCcccCCCCHHHHHHHHHhccCCcEEEE---eC---CHhhHHHHHHc
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSF---VS-PKWVPQLADAKDVMAAIQNVEGARFPVL---TP---NLKGFEAAVAA  184 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~---~~-~~~~p~~~D~~~v~~~i~~~~~~~l~~l---~~---n~~~ie~a~~~  184 (398)
                      ..+.+..++-++.|.+.|++.|-+...   .. .++. ......++++.+...++.....+   .+   +.+-++...++
T Consensus       167 ~r~~e~Vv~Ei~~l~~~g~~ei~l~~~~~~~yg~d~~-~~~~l~~Ll~~l~~~~g~~~i~~~~~~p~~i~~ell~~m~~~  245 (429)
T TIGR00089       167 SRPPEDILEEVKELVSKGVKEIVLLGQNVGAYGKDLK-GETNLADLLRELSKIDGIERIRFGSSHPDDVTDDLIELIAEN  245 (429)
T ss_pred             CCCHHHHHHHHHHHHHCCCceEEEEeeccccccCCCC-CCcCHHHHHHHHhcCCCCCEEEECCCChhhcCHHHHHHHHhC
Confidence            567888888888898999998877521   11 1110 01234566666665544322222   23   22335666666


Q ss_pred             C--CCEEEEe-ccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCC--CcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHh
Q 015894          185 G--AKEVAIF-ASASESFSKSNINCTIEDSLIRYRDVALAARELS--IPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYD  259 (398)
Q Consensus       185 G--v~~v~i~-~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G--~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~  259 (398)
                      |  ...+.+- =+.|+--++ .+++.  ...+.+.++++.+++.|  +.+.++++  +|.|.+   +.+.+.+.++.+.+
T Consensus       246 ~~~~~~l~igiES~s~~vLk-~m~R~--~~~~~~~~~i~~lr~~~~~i~i~~~~I--vG~PgE---T~ed~~~tl~~i~~  317 (429)
T TIGR00089       246 PKVCKHLHLPVQSGSDRILK-RMNRK--YTREEYLDIVEKIRAKIPDAAITTDII--VGFPGE---TEEDFEETLDLVEE  317 (429)
T ss_pred             CCccCceeeccccCChHHHH-hCCCC--CCHHHHHHHHHHHHHHCCCCEEEeeEE--EECCCC---CHHHHHHHHHHHHh
Confidence            4  7777773 355655444 35543  23455667788888888  66665555  777766   57788888888888


Q ss_pred             CCCCEEEE
Q 015894          260 MGCSEISL  267 (398)
Q Consensus       260 ~Gad~I~L  267 (398)
                      .+.+.+.+
T Consensus       318 ~~~~~~~~  325 (429)
T TIGR00089       318 VKFDKLHS  325 (429)
T ss_pred             cCCCEeec
Confidence            88877653

This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.

>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []

Probab=92.21  E-value=0.89  Score=44.03  Aligned_cols=154  Identities=14%  Similarity=0.101  Sum_probs=92.4

Q ss_pred             hHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecC-CCCCCCCHHHHHHHHH
Q 015894          177 GFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGC-PVEGMVPPSKVAYVSK  255 (398)
Q Consensus       177 ~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~-~~~~r~~~~~l~~~a~  255 (398)
                      |+=.....-+|.+-+...+|-.+.+           +.+++-|+.++++|+.|.      +|. -.+-.+....+.++.+
T Consensus        29 dlLe~ag~yID~~K~g~Gt~~l~~~-----------~~l~eki~l~~~~gV~v~------~GGtl~E~a~~q~~~~~yl~   91 (244)
T PF02679_consen   29 DLLESAGDYIDFLKFGWGTSALYPE-----------EILKEKIDLAHSHGVYVY------PGGTLFEVAYQQGKFDEYLE   91 (244)
T ss_dssp             HHHHHHGGG-SEEEE-TTGGGGSTC-----------HHHHHHHHHHHCTT-EEE------E-HHHHHHHHHTT-HHHHHH
T ss_pred             HHHHHhhhhccEEEecCceeeecCH-----------HHHHHHHHHHHHcCCeEe------CCcHHHHHHHhcChHHHHHH
Confidence            3333334458999998877765422           335677899999999875      221 0011112345566788


Q ss_pred             HHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhh-CCCCeEEEEeCC-------ccchHHHHHHHHHHhCCCEE--eecc
Q 015894          256 QLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDA-VPVDKLAVHFHD-------TYGQALSNILASLQMGISTV--DSSV  325 (398)
Q Consensus       256 ~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~-~p~~~l~~H~Hn-------d~GlA~ANalaAl~aGa~~V--D~Sv  325 (398)
                      .+.++|.+.|-+.|.+--+.+.+-.++|+.++++ +- +.-++.-.+       |...-+-.+...++|||+.|  ++-=
T Consensus        92 ~~k~lGf~~IEiSdGti~l~~~~r~~~I~~~~~~Gf~-v~~EvG~K~~~~~~~~~~~~~i~~~~~dLeAGA~~ViiEarE  170 (244)
T PF02679_consen   92 ECKELGFDAIEISDGTIDLPEEERLRLIRKAKEEGFK-VLSEVGKKDPESDFSLDPEELIEQAKRDLEAGADKVIIEARE  170 (244)
T ss_dssp             HHHHCT-SEEEE--SSS---HHHHHHHHHHHCCTTSE-EEEEES-SSHHHHTT--CCHHHHHHHHHHHHTECEEEE--TT
T ss_pred             HHHHcCCCEEEecCCceeCCHHHHHHHHHHHHHCCCE-EeecccCCCchhcccCCHHHHHHHHHHHHHCCCCEEEEeeec
Confidence            8889999999999999999999999999999876 32 223333332       35567788899999999955  5543


Q ss_pred             c---cCCCCCCCCCCCCCccHHHHHHHHHhCC
Q 015894          326 S---GLGGCPYAKGASGNVATEDVVYMLNGLG  354 (398)
Q Consensus       326 ~---GlGecp~a~graGNa~lE~vv~~L~~~G  354 (398)
                      .   |+=.      ..|+...+.+-..++..+
T Consensus       171 sG~~Gi~~------~~g~~r~d~v~~i~~~~~  196 (244)
T PF02679_consen  171 SGKGGIYD------NDGEVRTDLVEKIIERLG  196 (244)
T ss_dssp             T--STTB-------TTS-B-HHHHHHHHTTS-
T ss_pred             cCCCCccC------CCCCccHHHHHHHHHhCC
Confidence            3   4444      688999888888776554

Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.

>PRK07094 biotin synthase; Provisional

Probab=92.14  E-value=3.3  Score=41.09  Aligned_cols=79  Identities=13%  Similarity=0.132  Sum_probs=49.2

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEccC-cCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHH-HHhCCCEEe
Q 015894          245 VPPSKVAYVSKQLYDMGCSEISLGDT-IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILAS-LQMGISTVD  322 (398)
Q Consensus       245 ~~~~~l~~~a~~l~~~Gad~I~L~DT-~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaA-l~aGa~~VD  322 (398)
                      .+++.+.+.++.+.+.|++.|.|.+. ........+.++++.+++. +++  .+|++.  |.-....+.. .++|++.+.
T Consensus        70 ls~eei~~~~~~~~~~g~~~i~l~gG~~~~~~~~~l~~l~~~i~~~-~~l--~i~~~~--g~~~~e~l~~Lk~aG~~~v~  144 (323)
T PRK07094         70 LSPEEILECAKKAYELGYRTIVLQSGEDPYYTDEKIADIIKEIKKE-LDV--AITLSL--GERSYEEYKAWKEAGADRYL  144 (323)
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHcc-CCc--eEEEec--CCCCHHHHHHHHHcCCCEEE
Confidence            36788888888888888888888632 2334567788888888776 443  333322  3222233333 358888887


Q ss_pred             eccccC
Q 015894          323 SSVSGL  328 (398)
Q Consensus       323 ~Sv~Gl  328 (398)
                      .++-+.
T Consensus       145 ~glEs~  150 (323)
T PRK07094        145 LRHETA  150 (323)
T ss_pred             eccccC
Confidence            666554

>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF

Probab=92.12  E-value=9.9  Score=35.79  Aligned_cols=136  Identities=19%  Similarity=0.175  Sum_probs=79.8

Q ss_pred             EEEEeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHH-hCCCcEEEEEeeeecCCCC--CC
Q 015894          168 FPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAR-ELSIPVRGYLSCVVGCPVE--GM  244 (398)
Q Consensus       168 l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak-~~G~~v~~~l~~~fg~~~~--~r  244 (398)
                      +-+.+.+..++..|.+.|+++|-+....+.      =|.|+..      ..++.++ +..+++.+-|=     |-.  ..
T Consensus         3 lEvcv~s~~~a~~A~~~GAdRiELc~~l~~------GGlTPS~------g~i~~~~~~~~ipv~vMIR-----pr~gdF~   65 (201)
T PF03932_consen    3 LEVCVESLEDALAAEAGGADRIELCSNLEV------GGLTPSL------GLIRQAREAVDIPVHVMIR-----PRGGDFV   65 (201)
T ss_dssp             EEEEESSHHHHHHHHHTT-SEEEEEBTGGG------T-B---H------HHHHHHHHHTTSEEEEE-------SSSS-S-
T ss_pred             EEEEeCCHHHHHHHHHcCCCEEEECCCccC------CCcCcCH------HHHHHHHhhcCCceEEEEC-----CCCCCcc
Confidence            345567888999999999999999765432      1444432      2233333 56777664332     322  24


Q ss_pred             CCHHHHHH---HHHHHHhCCCCEEEEc--cCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHH-HhCC
Q 015894          245 VPPSKVAY---VSKQLYDMGCSEISLG--DTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASL-QMGI  318 (398)
Q Consensus       245 ~~~~~l~~---~a~~l~~~Gad~I~L~--DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl-~aGa  318 (398)
                      |+++++..   -++.+.++|++.|.+.  +.-|...-..+.++++...    ..++.||-=-|.=.-...++..+ +.|+
T Consensus        66 Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~dg~iD~~~~~~Li~~a~----~~~~tFHRAfD~~~d~~~al~~L~~lG~  141 (201)
T PF03932_consen   66 YSDEEIEIMKEDIRMLRELGADGFVFGALTEDGEIDEEALEELIEAAG----GMPVTFHRAFDEVPDPEEALEQLIELGF  141 (201)
T ss_dssp             --HHHHHHHHHHHHHHHHTT-SEEEE--BETTSSB-HHHHHHHHHHHT----TSEEEE-GGGGGSSTHHHHHHHHHHHT-
T ss_pred             CCHHHHHHHHHHHHHHHHcCCCeeEEEeECCCCCcCHHHHHHHHHhcC----CCeEEEeCcHHHhCCHHHHHHHHHhcCC
Confidence            66665554   4667778999986553  5566666667777776653    46789987666555566666655 7899


Q ss_pred             CEEeec
Q 015894          319 STVDSS  324 (398)
Q Consensus       319 ~~VD~S  324 (398)
                      ++|=||
T Consensus       142 ~rVLTS  147 (201)
T PF03932_consen  142 DRVLTS  147 (201)
T ss_dssp             SEEEES
T ss_pred             CEEECC
Confidence            999887

A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.

>COG3623 SgaU Putative L-xylulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]

Probab=92.08  E-value=12  Score=36.20  Aligned_cols=219  Identities=17%  Similarity=0.162  Sum_probs=115.5

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCC-CHHHHHHHHHhc--cCCcEEEEe-----C------CH---
Q 015894          113 KNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLA-DAKDVMAAIQNV--EGARFPVLT-----P------NL---  175 (398)
Q Consensus       113 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~-D~~~v~~~i~~~--~~~~l~~l~-----~------n~---  175 (398)
                      +..++=.+|+.+++   ++|+|.||....-+....-.+. +.++.+...+.+  .++++..+|     |      +.   
T Consensus        15 p~~~sW~erl~~AK---~~GFDFvEmSvDEsDeRLaRLDWs~~er~~l~~ai~etgv~ipSmClSaHRRfPfGS~D~~~r   91 (287)
T COG3623          15 PNGFSWLERLALAK---ELGFDFVEMSVDESDERLARLDWSKEERLALVNAIQETGVRIPSMCLSAHRRFPFGSKDEATR   91 (287)
T ss_pred             cCCCCHHHHHHHHH---HcCCCeEEEeccchHHHHHhcCCCHHHHHHHHHHHHHhCCCccchhhhhhccCCCCCCCHHHH
Confidence            45677888888876   5799999998654322111111 234555555432  344544443     2      10   


Q ss_pred             --------hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCH
Q 015894          176 --------KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPP  247 (398)
Q Consensus       176 --------~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~  247 (398)
                              +.++.|.+.|++.|.+.--  |++-+..-.-|++..++.++.+++.|.+.+....+.+|..   |.  ..+.
T Consensus        92 ~~aleiM~KaI~LA~dLGIRtIQLAGY--DVYYE~~d~eT~~rFi~g~~~a~~lA~~aqV~lAvEiMDt---pf--m~sI  164 (287)
T COG3623          92 QQALEIMEKAIQLAQDLGIRTIQLAGY--DVYYEEADEETRQRFIEGLKWAVELAARAQVMLAVEIMDT---PF--MNSI  164 (287)
T ss_pred             HHHHHHHHHHHHHHHHhCceeEeeccc--eeeeccCCHHHHHHHHHHHHHHHHHHHhhccEEEeeeccc---HH--HHHH
Confidence                    1245667788888776311  2222222222566677777888888887776665555521   11  1123


Q ss_pred             HHHHHHHHHHHhCCCCE-EEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccc
Q 015894          248 SKVAYVSKQLYDMGCSE-ISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVS  326 (398)
Q Consensus       248 ~~l~~~a~~l~~~Gad~-I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~  326 (398)
                      +.++.+.+   ..+-.. ...+| +|.++... .++...+..-.+. ...+|+-||+--                ..+.-
T Consensus       165 sk~~~~~~---~I~sP~f~vYPD-iGNlsaw~-ndv~~El~lG~~~-I~aiHlKDTy~v----------------te~~~  222 (287)
T COG3623         165 SKWLKYDK---YINSPWFTVYPD-IGNLSAWN-NDVQSELQLGIDK-IVAIHLKDTYAV----------------TETSP  222 (287)
T ss_pred             HHHHHHHH---HhCCCcEEecCC-cccHhhhh-hhHHHHHHcCcCc-eEEEEecccccc----------------cccCC
Confidence            33333322   223333 33444 45554433 2334444433333 477888888631                11111


Q ss_pred             c-CCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHH
Q 015894          327 G-LGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMI  366 (398)
Q Consensus       327 G-lGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~  366 (398)
                      | +-.-   |-+.|++.-+++...|+++++.-.+=++...+
T Consensus       223 GqFrdv---pfGeG~Vdf~~~f~~lk~~ny~gpfLIEMWse  260 (287)
T COG3623         223 GQFRDV---PFGEGCVDFEECFKTLKQLNYRGPFLIEMWSE  260 (287)
T ss_pred             CccccC---CcCCcchhHHHHHHHHHHhCCCCceehhhhhh
Confidence            1 1111   22468999999999999988765554444433

>PRK14325 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=92.07  E-value=9.2  Score=39.90  Aligned_cols=144  Identities=17%  Similarity=0.197  Sum_probs=85.2

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecC---CC-C-CcccCCCCHHHHHHHHHhccCC---cEEEEeCC---HhhHHHHHH
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSF---VS-P-KWVPQLADAKDVMAAIQNVEGA---RFPVLTPN---LKGFEAAVA  183 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~---~~-~-~~~p~~~D~~~v~~~i~~~~~~---~l~~l~~n---~~~ie~a~~  183 (398)
                      ..+.++.++=++.|.+.|++.|.+...   .. . ..-+......++++.+.+.++.   ++.+..+.   .+-++...+
T Consensus       175 sr~~e~Iv~Ei~~l~~~g~~ei~l~d~~~~~y~~~~~~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~l~~  254 (444)
T PRK14325        175 SRPVDDVLAEVAQLAEQGVREITLLGQNVNAYRGEGPDGEIADFAELLRLVAAIDGIERIRYTTSHPRDFTDDLIEAYAD  254 (444)
T ss_pred             cCCHHHHHHHHHHHHHCCCcEEEEEeeccccccCCCCCCCcchHHHHHHHHHhcCCccEEEEccCCcccCCHHHHHHHHc
Confidence            467888888888888899998876421   11 0 0001111345566665554443   33322232   233555566


Q ss_pred             cC--CCEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHH
Q 015894          184 AG--AKEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLY  258 (398)
Q Consensus       184 ~G--v~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~  258 (398)
                      .|  ...+++-+ +.|+.-++ .+++.  ...+.+.++++.++++  |+.+.++++  +|.|.+   +.+.+.+..+.+.
T Consensus       255 ~~~~~~~l~igiqSgs~~vLk-~m~R~--~~~~~~~~~i~~lr~~~~gi~v~~~~I--vG~PgE---T~ed~~~tl~~i~  326 (444)
T PRK14325        255 LPKLVPFLHLPVQSGSDRILK-AMNRG--HTALEYKSIIRKLRAARPDIAISSDFI--VGFPGE---TDEDFEATMKLIE  326 (444)
T ss_pred             CCcccCceeccCCcCCHHHHH-hCCCC--CCHHHHHHHHHHHHHHCCCCEEEeeEE--EECCCC---CHHHHHHHHHHHH
Confidence            64  67777743 44544433 34443  2345667788888887  667776666  677866   4677777777788


Q ss_pred             hCCCCEEE
Q 015894          259 DMGCSEIS  266 (398)
Q Consensus       259 ~~Gad~I~  266 (398)
                      +.+.+.+.
T Consensus       327 ~~~~~~~~  334 (444)
T PRK14325        327 DVGFDQSF  334 (444)
T ss_pred             hcCCCeee
Confidence            88877654

>TIGR00126 deoC deoxyribose-phosphate aldolase

Probab=92.05  E-value=11  Score=35.80  Aligned_cols=134  Identities=21%  Similarity=0.263  Sum_probs=78.1

Q ss_pred             EeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCC---HHHHHHHHHHHHhhCCCCe----EEEEeCCccch
Q 015894          233 LSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGT---PGTVIPMLEAVLDAVPVDK----LAVHFHDTYGQ  305 (398)
Q Consensus       233 l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~---P~~v~~lv~~l~~~~p~~~----l~~H~Hnd~Gl  305 (398)
                      ++.+.|.|....++..++.+ ++.+.+.|||.|-+.=-.|.+.   -..+.+-++.+++...+.+    ++...=++.-+
T Consensus        56 v~tVigFP~G~~~~~~K~~E-~~~Av~~GAdEiDvv~n~g~l~~g~~~~v~~ei~~i~~~~~g~~lKvIlE~~~L~~~ei  134 (211)
T TIGR00126        56 ICTVVGFPLGASTTDVKLYE-TKEAIKYGADEVDMVINIGALKDGNEEVVYDDIRAVVEACAGVLLKVIIETGLLTDEEI  134 (211)
T ss_pred             EEEEeCCCCCCCcHHHHHHH-HHHHHHcCCCEEEeecchHhhhCCcHHHHHHHHHHHHHHcCCCeEEEEEecCCCCHHHH
Confidence            44456678755444455555 5678889999998887788544   4667777777777543333    33332222333


Q ss_pred             HHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhC----CCC--Ccc-ChHHHHHHHHHHHHHhCC
Q 015894          306 ALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGL----GVR--TNV-DIRKLMIAGDFICKHLGR  377 (398)
Q Consensus       306 A~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~----Gi~--t~i-Dl~~L~~~~~~v~~~~g~  377 (398)
                      . -.+..|+++||++|=+|-+ .+        .+.+..|++..+.+..    ++.  =|+ +++...+..+.-.+.+|.
T Consensus       135 ~-~a~~ia~eaGADfvKTsTG-f~--------~~gat~~dv~~m~~~v~~~v~IKaaGGirt~~~a~~~i~aGa~riGt  203 (211)
T TIGR00126       135 R-KACEICIDAGADFVKTSTG-FG--------AGGATVEDVRLMRNTVGDTIGVKASGGVRTAEDAIAMIEAGASRIGA  203 (211)
T ss_pred             H-HHHHHHHHhCCCEEEeCCC-CC--------CCCCCHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHhhHHhCc
Confidence            3 5566789999999999854 22        2346667665554421    111  122 344555544444455554

Deoxyribose-phosphate aldolase is involved in the catabolism of nucleotides and deoxyriibonucleotides. The catalytic process is as follows: 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde. It is found in both gram-postive and gram-negative bacteria.

>PRK06801 hypothetical protein; Provisional

Probab=92.04  E-value=2  Score=42.59  Aligned_cols=120  Identities=15%  Similarity=0.170  Sum_probs=82.4

Q ss_pred             HHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEccCcC-cCCHHHHHHHHHHHHhhCC
Q 015894          214 RYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGDTIG-VGTPGTVIPMLEAVLDAVP  291 (398)
Q Consensus       214 ~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~DT~G-~~~P~~v~~lv~~l~~~~p  291 (398)
                      .++++.+.|++.|+-|-+ +.         -.+.+.+..+++.+.+.+... |.+....- ...+..+..++..+.++.+
T Consensus         5 ~~~~~l~~A~~~~yaV~A-fn---------~~n~e~~~avi~AAe~~~~PvIl~~~~~~~~~~~~~~~~~~~~~~a~~~~   74 (286)
T PRK06801          5 SLANGLAHARKHGYALGA-FN---------VLDSHFLRALFAAAKQERSPFIINIAEVHFKYISLESLVEAVKFEAARHD   74 (286)
T ss_pred             cHHHHHHHHHHCCceEEE-Ee---------eCCHHHHHHHHHHHHHHCCCEEEEeCcchhhcCCHHHHHHHHHHHHHHCC
Confidence            356778899999998752 22         146789999999999998774 55544332 3455778888888888775


Q ss_pred             CCeEEEEeCCccchHHHHHHHHHHhCCCEE--eeccccCCCCCCCCCCCCCc-cHHHHHHHHHhCCC
Q 015894          292 VDKLAVHFHDTYGQALSNILASLQMGISTV--DSSVSGLGGCPYAKGASGNV-ATEDVVYMLNGLGV  355 (398)
Q Consensus       292 ~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V--D~Sv~GlGecp~a~graGNa-~lE~vv~~L~~~Gi  355 (398)
                       +|+.+|.  |.|.-+..+..|+++|++.|  |+|-..+-+         |. -+.+++...+.+|+
T Consensus        75 -vpV~lHl--DH~~~~e~i~~Ai~~GftSVm~D~S~l~~ee---------Ni~~t~~v~~~a~~~gv  129 (286)
T PRK06801         75 -IPVVLNL--DHGLHFEAVVRALRLGFSSVMFDGSTLEYEE---------NVRQTREVVKMCHAVGV  129 (286)
T ss_pred             -CCEEEEC--CCCCCHHHHHHHHHhCCcEEEEcCCCCCHHH---------HHHHHHHHHHHHHHcCC
Confidence             4677765  55777888999999999854  666554433         33 34455555555554

>TIGR01430 aden_deam adenosine deaminase

Probab=91.91  E-value=10  Score=37.61  Aligned_cols=132  Identities=16%  Similarity=0.115  Sum_probs=77.1

Q ss_pred             hHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHH-hCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 015894          177 GFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAR-ELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSK  255 (398)
Q Consensus       177 ~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak-~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~  255 (398)
                      .++.++..|+..+.+...  +. ...+.|.+.++.++.+.+.++.++ +.|+.+...++. +   .  ..+++...+.++
T Consensus        77 ~~~e~~~~Gv~y~E~r~~--p~-~~~~~g~~~~~~~~~~~~~i~~a~~~~gi~~~li~~~-~---r--~~~~~~~~~~~~  147 (324)
T TIGR01430        77 YVEKAAKDGVVYAEVFFD--PQ-LHTNRGISPDTVVEAVLDGLDEAERDFGIKSRLILCG-M---R--HKQPEAAEETLE  147 (324)
T ss_pred             HHHHHHHcCCEEEEEEeC--cc-ccccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEE-e---C--CCCHHHHHHHHH
Confidence            345667889976666543  21 122457788999997777776664 568777644442 1   1  124667777777


Q ss_pred             HHHhCCCCEEEEccCcC---cCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHH-HhCCCEE
Q 015894          256 QLYDMGCSEISLGDTIG---VGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASL-QMGISTV  321 (398)
Q Consensus       256 ~l~~~Gad~I~L~DT~G---~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl-~aGa~~V  321 (398)
                      .+.+++.+.+.=.|..|   ...|..+...+...++.  +.++.+|++.+.+..  +...++ +.|++++
T Consensus       148 ~~~~~~~~~vvg~~l~~~e~~~~~~~~~~~~~~A~~~--g~~i~~Ha~E~~~~~--~~~~~~~~~g~~ri  213 (324)
T TIGR01430       148 LAKPYKEQTIVGFGLAGDERGGPPPDFVRAFAIAREL--GLHLTVHAGELGGPE--SVREALDDLGATRI  213 (324)
T ss_pred             HHHhhccCcEEEecCCCCCCCCCHHHHHHHHHHHHHC--CCCeEEecCCCCChH--HHHHHHHHcCchhc
Confidence            66666654332223332   23356666666665542  467889998763321  334454 5787543

This family includes the experimentally verified adenosine deaminases of mammals and E. coli. Other members of this family are predicted also to be adenosine deaminase, an enzyme of nucleotide degradation. This family is distantly related to AMP deaminase.

>PRK12738 kbaY tagatose-bisphosphate aldolase; Reviewed

Probab=91.91  E-value=2.5  Score=41.86  Aligned_cols=116  Identities=15%  Similarity=0.097  Sum_probs=82.9

Q ss_pred             HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE-EEccCc-CcCCHHHHHHHHHHHHhhCCC
Q 015894          215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEI-SLGDTI-GVGTPGTVIPMLEAVLDAVPV  292 (398)
Q Consensus       215 ~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I-~L~DT~-G~~~P~~v~~lv~~l~~~~p~  292 (398)
                      ++++.+.|++.|+-|- .+.+         ++.+.+..+++.+.+.+...| .+.... -.+....+..++..+.++.+ 
T Consensus         6 ~k~iL~~A~~~~yAV~-AfN~---------~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~~~~~~~~~~~~a~~~~-   74 (286)
T PRK12738          6 TKYLLQDAQANGYAVP-AFNI---------HNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYN-   74 (286)
T ss_pred             HHHHHHHHHHCCceEE-EEEe---------CCHHHHHHHHHHHHHHCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCC-
Confidence            4677888999999873 3332         367889999999999998754 433322 22345667888888888775 


Q ss_pred             CeEEEEeCCccchHHHHHHHHHHhCCC--EEeeccccCCCCCCCCCCCCCc-cHHHHHHHHHh
Q 015894          293 DKLAVHFHDTYGQALSNILASLQMGIS--TVDSSVSGLGGCPYAKGASGNV-ATEDVVYMLNG  352 (398)
Q Consensus       293 ~~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGecp~a~graGNa-~lE~vv~~L~~  352 (398)
                      +|+.+|  =|.|..+..+..|+++|.+  ++|+|-..+-+         |. -|-+++.+.+.
T Consensus        75 VPValH--LDHg~~~e~i~~ai~~GFtSVM~DgS~lp~ee---------Ni~~T~evv~~Ah~  126 (286)
T PRK12738         75 MPLALH--LDHHESLDDIRRKVHAGVRSAMIDGSHFPFAE---------NVKLVKSVVDFCHS  126 (286)
T ss_pred             CCEEEE--CCCCCCHHHHHHHHHcCCCeEeecCCCCCHHH---------HHHHHHHHHHHHHH
Confidence            467765  4778889999999999998  66999877665         44 45566666653

>PRK02412 aroD 3-dehydroquinate dehydratase; Provisional

Probab=91.90  E-value=13  Score=36.02  Aligned_cols=202  Identities=14%  Similarity=0.117  Sum_probs=119.3

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHH---Hh-ccCCcEEEEeCCH-h-------------hH
Q 015894          117 PAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAI---QN-VEGARFPVLTPNL-K-------------GF  178 (398)
Q Consensus       117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i---~~-~~~~~l~~l~~n~-~-------------~i  178 (398)
                      +.++.++-++.+...|+|.||+=...-.    .+.+.+.+...+   +. .++..+..-+|.. +             =+
T Consensus        26 ~~~e~~~~~~~~~~~~aD~vElRlD~l~----~~~~~~~~~~~~~~l~~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll  101 (253)
T PRK02412         26 TLEEVLAEALAISKYDADIIEWRADFLE----KISDVESVLAAAPAIREKFAGKPLLFTFRTAKEGGEIALSDEEYLALI  101 (253)
T ss_pred             CHHHHHHHHHHHhhcCCCEEEEEechhh----ccCCHHHHHHHHHHHHHhcCCCcEEEEECChhhCCCCCCCHHHHHHHH
Confidence            3455566677777889999999653211    112333333333   32 3344444444421 1             14


Q ss_pred             HHHHHcC-CCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC-CCHHHHHHHHHH
Q 015894          179 EAAVAAG-AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGM-VPPSKVAYVSKQ  256 (398)
Q Consensus       179 e~a~~~G-v~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r-~~~~~l~~~a~~  256 (398)
                      +.+++.| ++.|.|-...++               +.+.+.++.+++.|..+-+  ++-    +... .+.+.+.++.+.
T Consensus       102 ~~~~~~~~~d~vDiEl~~~~---------------~~~~~l~~~~~~~~~kvI~--S~H----~f~~tP~~~~l~~~~~~  160 (253)
T PRK02412        102 KAVIKSGLPDYIDVELFSGK---------------DVVKEMVAFAHEHGVKVVL--SYH----DFEKTPPKEEIVERLRK  160 (253)
T ss_pred             HHHHhcCCCCEEEEeccCCh---------------HHHHHHHHHHHHcCCEEEE--eeC----CCCCCcCHHHHHHHHHH
Confidence            5677788 899998654322               2345667788888887653  321    1112 233678889999


Q ss_pred             HHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhh---CCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCC
Q 015894          257 LYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDA---VPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPY  333 (398)
Q Consensus       257 l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~---~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~  333 (398)
                      +.++|+|.+-|+=+.  -++.++.+++...++.   .+..|+-.=.=-..  +...-+.+-..|-...-+++.. ..   
T Consensus       161 ~~~~gaDivKia~~a--~~~~D~~~ll~~~~~~~~~~~~~P~i~~~MG~~--G~~SRil~~~~GS~~ty~~~~~-~s---  232 (253)
T PRK02412        161 MESLGADIVKIAVMP--QSEQDVLTLLNATREMKELYADQPLITMSMGKL--GRISRLAGEVFGSSWTFASLDK-AS---  232 (253)
T ss_pred             HHHhCCCEEEEEecC--CCHHHHHHHHHHHHHHHhcCCCCCEEEEeCCCC--chHHHcchhhhCCcceecCCCC-CC---
Confidence            999999988886542  3567777777665432   23334432221222  2234566667787776666553 22   


Q ss_pred             CCCCCCCccHHHHHHHHHhCC
Q 015894          334 AKGASGNVATEDVVYMLNGLG  354 (398)
Q Consensus       334 a~graGNa~lE~vv~~L~~~G  354 (398)
                         +.|+.+++++...++.++
T Consensus       233 ---APGQ~~~~el~~i~~~l~  250 (253)
T PRK02412        233 ---APGQISVEDLRRILEILH  250 (253)
T ss_pred             ---CCCCCCHHHHHHHHHHhc
Confidence               567999999998888764

>TIGR03822 AblA_like_2 lysine-2,3-aminomutase-related protein

Probab=91.86  E-value=15  Score=36.78  Aligned_cols=182  Identities=13%  Similarity=0.051  Sum_probs=108.5

Q ss_pred             hccCCCCccEEEeCCCcccCCC------------CCCCCCHHHHHHHHHHHHhc-CCCEEEEecCCCCCcccCC---CCH
Q 015894           90 LLGRVPGFVKIVEVGPRDGLQN------------EKNIVPAVVKVELIKLLVSS-GLAVVEATSFVSPKWVPQL---ADA  153 (398)
Q Consensus        90 ~~~~~p~~I~i~D~TLRDG~Q~------------~~~~~~~~~k~~ia~~L~~a-Gv~~IEvG~~~~~~~~p~~---~D~  153 (398)
                      +.++.|..+.+. +|-+-..+-            ....++.++..++++.|.+. |+..|-++..-     |-+   .+.
T Consensus        82 l~hkyp~rvll~-vT~~C~~~Cr~C~r~~~~~~~~~~~l~~~e~~~~i~~i~~~~~I~~VilSGGD-----Pl~~~~~~L  155 (321)
T TIGR03822        82 IVHRYPDRVLLK-PVHVCPVYCRFCFRREMVGPEGLGVLSPAELDAAFAYIADHPEIWEVILTGGD-----PLVLSPRRL  155 (321)
T ss_pred             cccCCCCEEEEE-ecCCCCCcCcCCCchhhcCCcccCcCCHHHHHHHHHHHHhCCCccEEEEeCCC-----cccCCHHHH
Confidence            557788766654 333222211            11245777878888888754 88877775321     111   134


Q ss_pred             HHHHHHHHhccCCcEEEE-eC---------CHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHH
Q 015894          154 KDVMAAIQNVEGARFPVL-TP---------NLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAR  223 (398)
Q Consensus       154 ~~v~~~i~~~~~~~l~~l-~~---------n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak  223 (398)
                      .++++.++..+..+...+ ++         +.+-++...++|.. +.|.+..+.          ..+..+.+.++++.++
T Consensus       156 ~~ll~~l~~i~~v~~iri~Tr~~v~~p~rit~ell~~L~~~g~~-v~i~l~~~h----------~~el~~~~~~ai~~L~  224 (321)
T TIGR03822       156 GDIMARLAAIDHVKIVRFHTRVPVADPARVTPALIAALKTSGKT-VYVALHANH----------ARELTAEARAACARLI  224 (321)
T ss_pred             HHHHHHHHhCCCccEEEEeCCCcccChhhcCHHHHHHHHHcCCc-EEEEecCCC----------hhhcCHHHHHHHHHHH
Confidence            456666665554422222 11         12335666678843 455444332          1233466778889999


Q ss_pred             hCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCC--EEEEccCcCc-----CCHHHHHHHHHHHHhhCCC
Q 015894          224 ELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCS--EISLGDTIGV-----GTPGTVIPMLEAVLDAVPV  292 (398)
Q Consensus       224 ~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad--~I~L~DT~G~-----~~P~~v~~lv~~l~~~~p~  292 (398)
                      +.|+.+.......-|    --.+.+.+.++.+.+.++|+.  .+...|.++.     ..+.+..+++..+++.+++
T Consensus       225 ~~Gi~v~~q~vLl~g----vNd~~~~l~~l~~~l~~~gv~pyyl~~~~p~~g~~~f~~~~~~~~~i~~~l~~~~~g  296 (321)
T TIGR03822       225 DAGIPMVSQSVLLRG----VNDDPETLAALMRAFVECRIKPYYLHHLDLAPGTAHFRVTIEEGQALVRALRGRISG  296 (321)
T ss_pred             HcCCEEEEEeeEeCC----CCCCHHHHHHHHHHHHhcCCeeEEEEecCCCCCcccccCcHHHHHHHHHHHHHhCCC
Confidence            999987532221111    124678899999999999986  4667777743     4467889999999988875

Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in Rhodopseudomonas, Caulobacter crescentus, Bradyrhizobium, etc.

>PRK14340 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=91.86  E-value=4.6  Score=42.39  Aligned_cols=141  Identities=13%  Similarity=0.150  Sum_probs=87.7

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEec-----CCCCCcccCCCCHHHHHHHHHhc-cCCc--EEEEeC---CHhhHHHHHH
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATS-----FVSPKWVPQLADAKDVMAAIQNV-EGAR--FPVLTP---NLKGFEAAVA  183 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~-----~~~~~~~p~~~D~~~v~~~i~~~-~~~~--l~~l~~---n~~~ie~a~~  183 (398)
                      ..+.++.++=++.|.+.|+..|.+..     +..+..   ..+..++++.+... ++.+  +.+..+   +.+-++...+
T Consensus       177 sr~~e~Vv~Ei~~l~~~G~~ei~l~~~~~~~y~d~~~---~~~l~~Ll~~l~~~~~~~rir~~~~~p~~l~~ell~~~~~  253 (445)
T PRK14340        177 SHPFASVLDEVRALAEAGYREITLLGQNVNSYSDPEA---GADFAGLLDAVSRAAPEMRIRFTTSHPKDISESLVRTIAA  253 (445)
T ss_pred             CCCHHHHHHHHHHHHHCCCeEEEEeecccchhhccCC---CchHHHHHHHHhhcCCCcEEEEccCChhhcCHHHHHHHHh
Confidence            47888888888999999999887742     111111   12345566555432 3333  333333   2334555556


Q ss_pred             c--CCCEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHH
Q 015894          184 A--GAKEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLY  258 (398)
Q Consensus       184 ~--Gv~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~  258 (398)
                      .  |...+++-+ +.||.-++ .+|+.  ...+.+.++++.+++.  |+.+...++  +|.|.+   +.+.+.+.++.+.
T Consensus       254 ~~~g~~~l~iglQSgsd~vLk-~m~R~--~t~~~~~~~v~~lr~~~pgi~i~td~I--vGfPgE---T~edf~~tl~~~~  325 (445)
T PRK14340        254 RPNICNHIHLPVQSGSSRMLR-RMNRG--HTIEEYLEKIALIRSAIPGVTLSTDLI--AGFCGE---TEEDHRATLSLME  325 (445)
T ss_pred             CCCCCCeEEECCCcCCHHHHH-hcCCC--CCHHHHHHHHHHHHHhCCCCEEeccEE--EECCCC---CHHHHHHHHHHHH
Confidence            4  688888854 44555444 34442  2345666788888888  998877666  677866   5677777777778


Q ss_pred             hCCCCEEE
Q 015894          259 DMGCSEIS  266 (398)
Q Consensus       259 ~~Gad~I~  266 (398)
                      +.+.+.+.
T Consensus       326 ~~~~~~~~  333 (445)
T PRK14340        326 EVRFDSAF  333 (445)
T ss_pred             hcCCCEEe
Confidence            88876653

>PRK14334 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=91.84  E-value=6.5  Score=41.09  Aligned_cols=146  Identities=14%  Similarity=0.109  Sum_probs=86.5

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecC-CCC--CcccCCCCHHHHHHHHHhcc--CCcEEEEeC---CHhhHHHHHHc--
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSF-VSP--KWVPQLADAKDVMAAIQNVE--GARFPVLTP---NLKGFEAAVAA--  184 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~-~~~--~~~p~~~D~~~v~~~i~~~~--~~~l~~l~~---n~~~ie~a~~~--  184 (398)
                      ..+.++.++-++.|.+.|++.|-+... ...  .-.|...+..++++.+....  .+++...-+   +.+-++...+.  
T Consensus       166 sr~~e~Iv~Ei~~l~~~G~keI~l~g~~~~~yG~d~~~~~~~~~Ll~~l~~~~i~~ir~~~~~p~~i~~ell~~l~~~~~  245 (440)
T PRK14334        166 SRHPDLILRELELLKAAGVQEVTLLGQNVNSYGVDQPGFPSFAELLRLVGASGIPRVKFTTSHPMNFTDDVIAAMAETPA  245 (440)
T ss_pred             cCCHHHHHHHHHHHHHCCCeEEEEEeccccccccCCCCcCCHHHHHHHHHhcCCcEEEEccCCcccCCHHHHHHHHhcCc
Confidence            468888888889999999988876421 000  00011224566777666442  233333323   23445666664  


Q ss_pred             CCCEEEEe-ccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 015894          185 GAKEVAIF-ASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCS  263 (398)
Q Consensus       185 Gv~~v~i~-~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad  263 (398)
                      |...+++- =+.||.-++ .+++.  ...+.+.+.++.+++.|..+.....+.+|.|.+   +.+.+.+.++.+.++|.+
T Consensus       246 g~~~l~igvQSgs~~vLk-~m~R~--~~~~~~~~~v~~lr~~~~~i~i~~d~IvG~PgE---t~ed~~~tl~~i~~l~~~  319 (440)
T PRK14334        246 VCEYIHLPVQSGSDRVLR-RMARE--YRREKYLERIAEIREALPDVVLSTDIIVGFPGE---TEEDFQETLSLYDEVGYD  319 (440)
T ss_pred             CCCeEEeccccCCHHHHH-HhCCC--CCHHHHHHHHHHHHHhCCCcEEEEeEEEECCCC---CHHHHHHHHHHHHhcCCC
Confidence            47888884 344444333 33332  123445567788888876654444455787865   567788888888888887


Q ss_pred             EEE
Q 015894          264 EIS  266 (398)
Q Consensus       264 ~I~  266 (398)
                      .+.
T Consensus       320 ~i~  322 (440)
T PRK14334        320 SAY  322 (440)
T ss_pred             Eee
Confidence            653

>TIGR03821 AblA_like_1 lysine-2,3-aminomutase-related protein

Probab=91.84  E-value=15  Score=36.81  Aligned_cols=183  Identities=15%  Similarity=0.154  Sum_probs=104.8

Q ss_pred             hccCCCCccEEEeCCCcccCCCC----------CCCCCHHHHHHHHHHHHh-cCCCEEEEecCCCCCcccCCCC--HHHH
Q 015894           90 LLGRVPGFVKIVEVGPRDGLQNE----------KNIVPAVVKVELIKLLVS-SGLAVVEATSFVSPKWVPQLAD--AKDV  156 (398)
Q Consensus        90 ~~~~~p~~I~i~D~TLRDG~Q~~----------~~~~~~~~k~~ia~~L~~-aGv~~IEvG~~~~~~~~p~~~D--~~~v  156 (398)
                      +.+..+.++.+. +|-+-...-.          ....+.++-.+++..+.+ .|+..|-++.. .|- .  ..|  .+++
T Consensus        90 l~hkY~~r~l~~-~t~~Cn~~Cr~C~~~~~~~~~~~~~~~~~~~~i~~i~~~~~i~~VvltGG-EPL-~--~~d~~L~~l  164 (321)
T TIGR03821        90 LLHKYHGRVLLI-VTGGCAINCRYCFRRHFPYQENQPNKAQWKEALEYIAQHPEINEVILSGG-DPL-M--AKDHRLDWL  164 (321)
T ss_pred             eeeecCCEEEEE-eCCCcCCcCcCCCCCCcCCCCCCCCHHHHHHHHHHHHhcCCCCEEEEeCc-ccc-c--CCchHHHHH
Confidence            335566665443 5444333222          124566777777777764 48887766542 221 0  123  4455


Q ss_pred             HHHHHhccCC---cE----EEEeCCH---hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCC
Q 015894          157 MAAIQNVEGA---RF----PVLTPNL---KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELS  226 (398)
Q Consensus       157 ~~~i~~~~~~---~l----~~l~~n~---~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G  226 (398)
                      ++.++.++.+   ++    .++.+++   +-++...+.|...+.+ ++.+-.          .|.-+..+++++.+++.|
T Consensus       165 l~~l~~i~~~~~iri~tr~~~~~p~rit~el~~~L~~~~~~~~~~-~h~dh~----------~Ei~d~~~~ai~~L~~~G  233 (321)
T TIGR03821       165 LNLLEQIPHLKRLRIHTRLPVVIPDRITSGLCDLLANSRLQTVLV-VHINHA----------NEIDAEVADALAKLRNAG  233 (321)
T ss_pred             HHHHHhCCCCcEEEEecCcceeeHHHhhHHHHHHHHhcCCcEEEE-eeCCCh----------HhCcHHHHHHHHHHHHcC
Confidence            5555544432   22    2343442   2345556678766532 222211          122244667889999999


Q ss_pred             CcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE--EEEccCcCc-----CCHHHHHHHHHHHHhhCCC
Q 015894          227 IPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE--ISLGDTIGV-----GTPGTVIPMLEAVLDAVPV  292 (398)
Q Consensus       227 ~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~--I~L~DT~G~-----~~P~~v~~lv~~l~~~~p~  292 (398)
                      +.+...-.  .-  ..-..+.+.+.++++.+.++|+..  +...|-+|.     ..+++..++++.+++..++
T Consensus       234 i~v~~qtv--ll--kgiNDn~~~l~~L~~~l~~~gv~pyyl~~~~p~gg~~~f~v~~~~~~~i~~~l~~~~sG  302 (321)
T TIGR03821       234 ITLLNQSV--LL--RGVNDNADTLAALSERLFDAGVLPYYLHLLDKVQGAAHFDVDDERARALMAELLARLPG  302 (321)
T ss_pred             CEEEecce--ee--CCCCCCHHHHHHHHHHHHHcCCeeCcccccCCCCCcccccCCHHHHHHHHHHHHHhCCC
Confidence            98752222  10  011136789999999999999875  455666664     3578899999999998865

Members of this protein form a distinctive clade, homologous to lysine-2,3-aminomutase (of Bacillus, Clostridium, and methanogenic archaea) and likely similar in function. Members of this family are found in E. coli, Buchnera, Yersinia, etc.

>PRK10605 N-ethylmaleimide reductase; Provisional

Probab=91.82  E-value=7.1  Score=39.87  Aligned_cols=141  Identities=16%  Similarity=0.057  Sum_probs=84.7

Q ss_pred             HHHHHcCCCEEEEecc--------CchH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-CCc-EEEEEeee--ecCCCCCC
Q 015894          179 EAAVAAGAKEVAIFAS--------ASES--FSKSNINCTIEDSLIRYRDVALAAREL-SIP-VRGYLSCV--VGCPVEGM  244 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~--------~Sd~--~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~~-v~~~l~~~--fg~~~~~r  244 (398)
                      ++|.++|.|.|-|...        +|+.  ++...+|-|.|+=...+.++++.+|+. |-. +.+-++..  +.. ..+-
T Consensus       166 ~rA~~AGfDGVEIh~ahGyLl~qFLSp~~N~RtDeYGGslENR~Rf~~Eiv~aVr~~vg~~~igvRis~~~~~~~-~~~G  244 (362)
T PRK10605        166 ANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAGIAEWGADRIGIRISPLGTFNN-VDNG  244 (362)
T ss_pred             HHHHHcCCCEEEEcccccchHHHhcCCcCCCCCCcCCCcHHHHHHHHHHHHHHHHHHcCCCeEEEEECCcccccc-CCCC
Confidence            4667899999987432        2222  233345667888788888888888764 332 33223311  000 1112


Q ss_pred             CCHHH-HHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhC-CCEEe
Q 015894          245 VPPSK-VAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMG-ISTVD  322 (398)
Q Consensus       245 ~~~~~-l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aG-a~~VD  322 (398)
                      .++++ .+++++.+.+.|+|.|.+....-...+.-...+.+.+++.++. +|..-.-+|    ...+..+++.| +|.  
T Consensus       245 ~~~~e~~~~~~~~L~~~giD~i~vs~~~~~~~~~~~~~~~~~ik~~~~~-pv~~~G~~~----~~~ae~~i~~G~~D~--  317 (362)
T PRK10605        245 PNEEADALYLIEQLGKRGIAYLHMSEPDWAGGEPYSDAFREKVRARFHG-VIIGAGAYT----AEKAETLIGKGLIDA--  317 (362)
T ss_pred             CCHHHHHHHHHHHHHHcCCCEEEeccccccCCccccHHHHHHHHHHCCC-CEEEeCCCC----HHHHHHHHHcCCCCE--
Confidence            46667 7999999999999998886421000111123456778887764 455544444    56788889988 565  


Q ss_pred             eccccCCC
Q 015894          323 SSVSGLGG  330 (398)
Q Consensus       323 ~Sv~GlGe  330 (398)
                         .|||+
T Consensus       318 ---V~~gR  322 (362)
T PRK10605        318 ---VAFGR  322 (362)
T ss_pred             ---EEECH
Confidence               46665

>PRK06294 coproporphyrinogen III oxidase; Provisional

Probab=91.77  E-value=3.9  Score=41.70  Aligned_cols=107  Identities=16%  Similarity=0.147  Sum_probs=68.1

Q ss_pred             HHHHHHHHhccCCcEEEEe-C---CHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-
Q 015894          154 KDVMAAIQNVEGARFPVLT-P---NLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIP-  228 (398)
Q Consensus       154 ~~v~~~i~~~~~~~l~~l~-~---n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~-  228 (398)
                      +++++.++..++..++.-+ |   +.+.++...++|+.+|.+-+..-+-.....+|+.  ...+.+.++++.+++.|+. 
T Consensus        78 ~~ll~~i~~~~~~eit~E~~P~~~~~~~l~~l~~~G~nrislGvQS~~~~~L~~l~R~--~~~~~~~~ai~~~~~~g~~~  155 (370)
T PRK06294         78 QDILKTLEAPHATEITLEANPENLSESYIRALALTGINRISIGVQTFDDPLLKLLGRT--HSSSKAIDAVQECSEHGFSN  155 (370)
T ss_pred             HHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHCCCCEEEEccccCCHHHHHHcCCC--CCHHHHHHHHHHHHHcCCCe
Confidence            3444445433455555544 2   2456788889999988885443332333344432  1233445677889999996 


Q ss_pred             EEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 015894          229 VRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL  267 (398)
Q Consensus       229 v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L  267 (398)
                      |.+.++  +|.|..   +.+.+.+-++.+.+++++.|.+
T Consensus       156 v~~Dli--~GlPgq---t~~~~~~~l~~~~~l~~~~is~  189 (370)
T PRK06294        156 LSIDLI--YGLPTQ---SLSDFIVDLHQAITLPITHISL  189 (370)
T ss_pred             EEEEee--cCCCCC---CHHHHHHHHHHHHccCCCeEEE
Confidence            666665  677754   6788888889999999987765

>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E

Probab=91.74  E-value=17  Score=37.18  Aligned_cols=198  Identities=15%  Similarity=0.088  Sum_probs=122.3

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCc---------ccCCC---CHHHHHHHHHhc---cCCcEEEEe---CCH-
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKW---------VPQLA---DAKDVMAAIQNV---EGARFPVLT---PNL-  175 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~---------~p~~~---D~~~v~~~i~~~---~~~~l~~l~---~n~-  175 (398)
                      .+..+....++++-.+.+-+.|=-.++..-++         +|+.+   ....+...++..   -.+.+....   .+. 
T Consensus        34 v~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~v~~~Ae~a~VPValHLDHg~~~~  113 (357)
T TIGR01520        34 CTSSSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASILGAIAGAHHVHSIAEHYGVPVVLHTDHCAKKL  113 (357)
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCCCCcc
Confidence            47788888899999999999876655432221         12111   112233333321   133333332   244 


Q ss_pred             -hhHHHHHHcC-----------CCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC-
Q 015894          176 -KGFEAAVAAG-----------AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE-  242 (398)
Q Consensus       176 -~~ie~a~~~G-----------v~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~-  242 (398)
                       +.++.++++|           ...|.+=  .|        ..+.+++++.-++++++|+..|+.|++.|-..-|.++. 
T Consensus       114 ~~~i~~ai~ag~~~~~~~g~~gftSVMiD--gS--------~lpfeENI~~TrevVe~Ah~~GvsVEaELG~vgG~Ed~~  183 (357)
T TIGR01520       114 LPWVDGLLEAGEKYFSAHGKPLFSSHMID--LS--------EEPIEENIEICVKYLKRMAKIKMWLEIEIGITGGEEDGV  183 (357)
T ss_pred             hHHHHHHHHhhhhhhhhcCCCCCceEEee--CC--------CCCHHHHHHHHHHHHHHHHHcCCEEEEEecccCCccCCc
Confidence             4478888876           5656552  22        23578999999999999999999999888776454442 


Q ss_pred             ---C------CCCHHHHHHHHHHHH-hCCCCE--EEEccCcCcCC---HHHHHHHHHHH----HhhC--C---CCeEEEE
Q 015894          243 ---G------MVPPSKVAYVSKQLY-DMGCSE--ISLGDTIGVGT---PGTVIPMLEAV----LDAV--P---VDKLAVH  298 (398)
Q Consensus       243 ---~------r~~~~~l~~~a~~l~-~~Gad~--I~L~DT~G~~~---P~~v~~lv~~l----~~~~--p---~~~l~~H  298 (398)
                         .      -++|+...+++++.. .-|+|.  +.+.-.=|.-.   |.=-.++++.+    ++..  |   .+||.+|
T Consensus       184 ~~~~~~~~~~yTdPeeA~~Fv~~t~~~TgvD~LAvAiGT~HG~Yk~~~p~Ld~d~L~~I~~~~~~~~~vP~~~~~pLVLH  263 (357)
T TIGR01520       184 DNSHMDAEALYTQPEDVYYAYEELSKISPNFSIAAAFGNVHGVYKPGNVKLTPDILADGQEYVSEKLGLPAAKPLFFVFH  263 (357)
T ss_pred             ccccccccccCCCHHHHHHHHHHhccCCCcceeeeeeccccCCcCCCCCccCHHHHHHHHHHHHHhcCCCcCCCCcEEEe
Confidence               1      378888888876552 237775  45554555442   32333445555    3433  3   2237766


Q ss_pred             eCCccchHHHHHHHHHHhCCCEEeec
Q 015894          299 FHDTYGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       299 ~Hnd~GlA~ANalaAl~aGa~~VD~S  324 (398)
                      +  .-|..--....|++.|+.-|+..
T Consensus       264 G--gSGi~~e~i~kai~~GI~KINi~  287 (357)
T TIGR01520       264 G--GSGSTKQEIKEALSYGVVKMNID  287 (357)
T ss_pred             C--CCCCCHHHHHHHHHCCCeEEEeC
Confidence            6  56677788999999999877654

coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.

>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed

Probab=91.74  E-value=14  Score=36.27  Aligned_cols=136  Identities=16%  Similarity=0.198  Sum_probs=73.0

Q ss_pred             HHHHHHHhcCCCEEEEecCCC-CCc-c--c-----------C--C--CCHHHHHHHHHh-cc--CCcEEE-E-eCCHhhH
Q 015894          123 ELIKLLVSSGLAVVEATSFVS-PKW-V--P-----------Q--L--ADAKDVMAAIQN-VE--GARFPV-L-TPNLKGF  178 (398)
Q Consensus       123 ~ia~~L~~aGv~~IEvG~~~~-~~~-~--p-----------~--~--~D~~~v~~~i~~-~~--~~~l~~-l-~~n~~~i  178 (398)
                      +.++.+.+.|+..|++++... |.. .  |           .  +  ...+.+++.++. ..  +..+.+ + ..+.+++
T Consensus        27 ~~~~~~~~~g~g~v~~kti~~~~~~g~~~pr~~~~~~~~~n~~g~~~~g~~~~~~~~~~~~~~~~~p~i~si~g~~~~~~  106 (301)
T PRK07259         27 EYARFYDLNGLGAIVTKSTTLEPREGNPTPRIAETPGGMLNAIGLQNPGVDAFIEEELPWLEEFDTPIIANVAGSTEEEY  106 (301)
T ss_pred             HHHHHhhhcCCcEEEeCCCCCCCCCCCCCCcEEecCCceeecCCCCCcCHHHHHHHHHHHHhccCCcEEEEeccCCHHHH
Confidence            677888999999999986431 100 0  1           0  1  123444544432 22  222222 2 2355554


Q ss_pred             H----HHHHcC-CCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecCCCCCCCCHHHHHH
Q 015894          179 E----AAVAAG-AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAREL-SIPVRGYLSCVVGCPVEGMVPPSKVAY  252 (398)
Q Consensus       179 e----~a~~~G-v~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~~v~~~l~~~fg~~~~~r~~~~~l~~  252 (398)
                      .    ++.+.| +|.|-+-++. +. .... +....+..+.+.++++.+|+. .+.|.+-+.          .+.+...+
T Consensus       107 ~~~a~~~~~aG~~D~iElN~~c-P~-~~~g-g~~~~~~~~~~~eiv~~vr~~~~~pv~vKl~----------~~~~~~~~  173 (301)
T PRK07259        107 AEVAEKLSKAPNVDAIELNISC-PN-VKHG-GMAFGTDPELAYEVVKAVKEVVKVPVIVKLT----------PNVTDIVE  173 (301)
T ss_pred             HHHHHHHhccCCcCEEEEECCC-CC-CCCC-ccccccCHHHHHHHHHHHHHhcCCCEEEEcC----------CCchhHHH
Confidence            3    445678 9988774431 11 1110 111111234555666666665 566554333          13356788


Q ss_pred             HHHHHHhCCCCEEEEccCc
Q 015894          253 VSKQLYDMGCSEISLGDTI  271 (398)
Q Consensus       253 ~a~~l~~~Gad~I~L~DT~  271 (398)
                      +++.+.++|+|.|.+-+|+
T Consensus       174 ~a~~l~~~G~d~i~~~nt~  192 (301)
T PRK07259        174 IAKAAEEAGADGLSLINTL  192 (301)
T ss_pred             HHHHHHHcCCCEEEEEccc
Confidence            8999999999998876553

>PTZ00372 endonuclease 4-like protein; Provisional

Probab=91.72  E-value=17  Score=37.98  Aligned_cols=120  Identities=18%  Similarity=0.120  Sum_probs=72.2

Q ss_pred             hHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHH
Q 015894          177 GFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQ  256 (398)
Q Consensus       177 ~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~  256 (398)
                      ++++|.+.|++.|.+..+..      .-...++++++++.+.+..+.+....|...|..+.|....--.+++.+.++++.
T Consensus       223 eL~rA~~LGa~~VV~HPGs~------~~~~~~ee~i~~i~e~L~~~la~~~gV~IlLENmag~g~~lG~~~eeL~~Iid~  296 (413)
T PTZ00372        223 DLQRCEQLGIKLYNFHPGST------VGQCSKEEGIKNIADCINKAHEETKSVIIVLENTAGQKNSVGSKFEDLRDIIAL  296 (413)
T ss_pred             HHHHHHHcCCCEEEECCCcC------CCCCCHHHHHHHHHHHHHHHHhCcCCCEEEEecCCCCCCcccCCHHHHHHHHHh
Confidence            46788889999887754321      112345778888888887776554445544543322111111467888887766


Q ss_pred             HHhCCCCEEEEc-cCc-----Cc--CCHHHHHHHHHHHHhhCC-CCeEEEEeCCccc
Q 015894          257 LYDMGCSEISLG-DTI-----GV--GTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYG  304 (398)
Q Consensus       257 l~~~Gad~I~L~-DT~-----G~--~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~G  304 (398)
                      +.+  .+++.+| ||.     |+  -+|..+.+++..+.+.+. +---++|+||..|
T Consensus       297 v~~--~~rlGvCLDTcHafaAGydl~t~e~~~~~l~~f~~~iGl~rL~~vHLNDSk~  351 (413)
T PTZ00372        297 VED--KSRVGVCLDTCHLFAAGYDIRTKESFDKVMKEFDEIVGLKYLKAVHLNDSKS  351 (413)
T ss_pred             cCC--cCCeEEEEEHHHHHhcCCCCCcHHHHHHHHHHHHHhcChhheeEEEEEcCCC
Confidence            532  2333322 553     32  367788888888877664 3346789999875

>PRK14332 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=91.67  E-value=8.5  Score=40.43  Aligned_cols=143  Identities=13%  Similarity=0.108  Sum_probs=81.9

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccC---CcEEEEeCC---HhhHHHHHHcC--C
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEG---ARFPVLTPN---LKGFEAAVAAG--A  186 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~---~~l~~l~~n---~~~ie~a~~~G--v  186 (398)
                      ..+.+..++-++.|.+.|++.|-+..-.-..+.....+..+++..+...++   +++..+-+.   .+-++...++|  .
T Consensus       182 sr~~e~Iv~Ei~~l~~~G~kei~l~~~~~~~y~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~~~~ell~~m~~~~~~~  261 (449)
T PRK14332        182 SRDPKSIVREIQDLQEKGIRQVTLLGQNVNSYKEQSTDFAGLIQMLLDETTIERIRFTSPHPKDFPDHLLSLMAKNPRFC  261 (449)
T ss_pred             cCCHHHHHHHHHHHHHCCCeEEEEecccCCcccCCcccHHHHHHHHhcCCCcceEEEECCCcccCCHHHHHHHHhCCCcc
Confidence            468899999999999999988876421100000011223344443433332   233222222   22355666777  6


Q ss_pred             CEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 015894          187 KEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCS  263 (398)
Q Consensus       187 ~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad  263 (398)
                      ..+++-+ +.||.-++ .+|+.  -..+.+.++++.+++.  ++.+..+++  +|.|.+   +.+.+.+.++.+.+.+.+
T Consensus       262 ~~l~lgvQSgsd~vLk-~m~R~--~t~~~~~~~i~~lr~~~p~i~i~td~I--vGfPgE---T~edf~~tl~~v~~l~~~  333 (449)
T PRK14332        262 PNIHLPLQAGNTRVLE-EMKRS--YSKEEFLDVVKEIRNIVPDVGITTDII--VGFPNE---TEEEFEDTLAVVREVQFD  333 (449)
T ss_pred             ceEEECCCcCCHHHHH-hhCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEE--eeCCCC---CHHHHHHHHHHHHhCCCC
Confidence            7788743 44444433 34442  1234455667777776  566665555  677876   567777788888888887


Q ss_pred             EE
Q 015894          264 EI  265 (398)
Q Consensus       264 ~I  265 (398)
                      .+
T Consensus       334 ~~  335 (449)
T PRK14332        334 MA  335 (449)
T ss_pred             EE
Confidence            65

>cd00003 PNPsynthase Pyridoxine 5'-phosphate (PNP) synthase domain; pyridoxal 5'-phosphate is the active form of vitamin B6 that acts as an essential, ubiquitous coenzyme in amino acid metabolism

Probab=91.63  E-value=2.2  Score=40.96  Aligned_cols=97  Identities=24%  Similarity=0.332  Sum_probs=62.7

Q ss_pred             HHHHHHHhc--cCCcEEEEe-CCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEE
Q 015894          155 DVMAAIQNV--EGARFPVLT-PNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRG  231 (398)
Q Consensus       155 ~v~~~i~~~--~~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~  231 (398)
                      .+...++++  .+++++.++ |+.++++.|.+.|++.|-++...   +....-....++.++++..++++|+++|+.|.+
T Consensus       111 ~l~~~i~~l~~~gI~VSLFiDPd~~qi~~A~~~GAd~VELhTG~---Ya~a~~~~~~~~el~~i~~aa~~a~~~GL~VnA  187 (234)
T cd00003         111 KLKPIIERLKDAGIRVSLFIDPDPEQIEAAKEVGADRVELHTGP---YANAYDKAEREAELERIAKAAKLARELGLGVNA  187 (234)
T ss_pred             HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEechh---hhcCCCchhHHHHHHHHHHHHHHHHHcCCEEec
Confidence            334444433  356666666 67889999999999999987652   222111112355799999999999999999862


Q ss_pred             EEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 015894          232 YLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL  267 (398)
Q Consensus       232 ~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L  267 (398)
                                ..-.+.+.+..+++   --+...++|
T Consensus       188 ----------GHgLny~Nv~~i~~---ip~i~ElnI  210 (234)
T cd00003         188 ----------GHGLNYENVKPIAK---IPGIAELNI  210 (234)
T ss_pred             ----------CCCCCHHHHHHHHh---CCCCeEEcc
Confidence                      12345566665553   234556654

In bacteria, formation of pyridoxine 5'-phosphate is a step in the biosynthesis of vitamin B6. PNP synthase, a homooctameric enzyme, catalyzes the final step in PNP biosynthesis, the condensation of 1-amino-acetone 3-phosphate and 1-deoxy-D-xylulose 5-phosphate. PNP synthase adopts a TIM barrel topology, intersubunit contacts are mediated by three ''extra'' helices, generating a tetramer of symmetric dimers with shared active sites; the open state has been proposed to accept substrates and to release products, while most of the catalytic events are likely to occur in the closed state; a hydrophilic channel running through the center of the barrel was identified as the essential structural feature that enables PNP synthase to release water molecules produced during the reaction from the closed,

>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid)

Probab=91.62  E-value=4  Score=40.06  Aligned_cols=104  Identities=13%  Similarity=0.113  Sum_probs=57.4

Q ss_pred             HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894          178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL  257 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l  257 (398)
                      ++.+++.-...+-+++.++..        +.    +...+.++.|++.|.....     ...|...+.+.+.+.+..+.+
T Consensus        60 ~~~~~~~~~~~~~viagv~~~--------~~----~~ai~~a~~a~~~Gad~v~-----~~~P~y~~~~~~~i~~~~~~v  122 (288)
T cd00954          60 AEIVAEAAKGKVTLIAHVGSL--------NL----KESQELAKHAEELGYDAIS-----AITPFYYKFSFEEIKDYYREI  122 (288)
T ss_pred             HHHHHHHhCCCCeEEeccCCC--------CH----HHHHHHHHHHHHcCCCEEE-----EeCCCCCCCCHHHHHHHHHHH
Confidence            455555433456666665432        22    3344566788889987542     114555556677777777766


Q ss_pred             HhC--CCCE--EEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEE-eCCcc
Q 015894          258 YDM--GCSE--ISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVH-FHDTY  303 (398)
Q Consensus       258 ~~~--Gad~--I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H-~Hnd~  303 (398)
                      .+.  +...  ..++...|.-.+.+   ++..|.+ .|++ +++. ...|.
T Consensus       123 ~~a~~~lpi~iYn~P~~tg~~l~~~---~~~~L~~-~pni-vgiK~s~~d~  168 (288)
T cd00954         123 IAAAASLPMIIYHIPALTGVNLTLE---QFLELFE-IPNV-IGVKFTATDL  168 (288)
T ss_pred             HHhcCCCCEEEEeCccccCCCCCHH---HHHHHhc-CCCE-EEEEeCCCCH
Confidence            553  3443  34667777655543   3344443 6764 6664 44444

It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.

>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit

Probab=91.52  E-value=6.9  Score=34.44  Aligned_cols=113  Identities=19%  Similarity=0.234  Sum_probs=69.7

Q ss_pred             HHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCCHhhHHHHHHcCCCEEEEeccCchHHH
Q 015894          121 KVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFS  200 (398)
Q Consensus       121 k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~  200 (398)
                      |.-++..|.+.|++.+..|..++|         +++                     ++.|.+.+++.|.+..-..    
T Consensus        18 k~iv~~~l~~~GfeVi~LG~~v~~---------e~~---------------------v~aa~~~~adiVglS~l~~----   63 (134)
T TIGR01501        18 NKILDHAFTNAGFNVVNLGVLSPQ---------EEF---------------------IKAAIETKADAILVSSLYG----   63 (134)
T ss_pred             HHHHHHHHHHCCCEEEECCCCCCH---------HHH---------------------HHHHHHcCCCEEEEecccc----
Confidence            344677889999999999987653         333                     3456677788887743221    


Q ss_pred             hhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHH
Q 015894          201 KSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVI  280 (398)
Q Consensus       201 ~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~  280 (398)
                               ..+..++++++..++.|+.-.. +.  +|...  -.+++...+..+++.++|++.+.=++|    .|+++.
T Consensus        64 ---------~~~~~~~~~~~~l~~~gl~~~~-vi--vGG~~--vi~~~d~~~~~~~l~~~Gv~~vF~pgt----~~~~iv  125 (134)
T TIGR01501        64 ---------HGEIDCKGLRQKCDEAGLEGIL-LY--VGGNL--VVGKQDFPDVEKRFKEMGFDRVFAPGT----PPEVVI  125 (134)
T ss_pred             ---------cCHHHHHHHHHHHHHCCCCCCE-EE--ecCCc--CcChhhhHHHHHHHHHcCCCEEECcCC----CHHHHH
Confidence                     1234566778888888874221 21  22210  134455555566778899998887776    556655


Q ss_pred             HHHHH
Q 015894          281 PMLEA  285 (398)
Q Consensus       281 ~lv~~  285 (398)
                      +.++.
T Consensus       126 ~~l~~  130 (134)
T TIGR01501       126 ADLKK  130 (134)
T ss_pred             HHHHH
Confidence            55543

This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.

>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase

Probab=91.52  E-value=3.2  Score=41.92  Aligned_cols=38  Identities=18%  Similarity=0.214  Sum_probs=31.9

Q ss_pred             CccccCccCCCCCCCccchhhhhhhccCCCCccEEEeCCCcccCC
Q 015894           66 NGYLSKAHYSSSCTDNSTKDLTSKLLGRVPGFVKIVEVGPRDGLQ  110 (398)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~I~i~D~TLRDG~Q  110 (398)
                      ++|..+++|+++    +...++..+...   .|..+++|..||..
T Consensus        13 G~q~~~~~f~~~----~~~~ia~~Ld~a---GV~~IEvg~g~gl~   50 (333)
T TIGR03217        13 GMHAIRHQFTIE----QVRAIAAALDEA---GVDAIEVTHGDGLG   50 (333)
T ss_pred             CCcCCCCcCCHH----HHHHHHHHHHHc---CCCEEEEecCCCCC
Confidence            677889999999    888899998865   68899999888853

Members of this protein family are 4-hydroxy-2-oxovalerate aldolase, also called 4-hydroxy-2-ketovalerate aldolase and 2-oxo-4-hydroxypentanoate aldolase. This enzyme, part of the pathway for the meta-cleavage of catechol, produces pyruvate and acetaldehyde. Acetaldehyde is then converted by acetaldehyde dehydrogenase (acylating) (DmpF; EC 1.2.1.10) to acetyl-CoA. The two enzymes are tightly associated.

>PRK08207 coproporphyrinogen III oxidase; Provisional

Probab=91.50  E-value=4.6  Score=42.93  Aligned_cols=108  Identities=14%  Similarity=0.136  Sum_probs=70.5

Q ss_pred             HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEeeeecCCCCCCCCHHHHHHH
Q 015894          175 LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSI-PVRGYLSCVVGCPVEGMVPPSKVAYV  253 (398)
Q Consensus       175 ~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~-~v~~~l~~~fg~~~~~r~~~~~l~~~  253 (398)
                      .+-++...++|+.+|.+-+-..+-..-..+|+.  ...+.+.++++.+++.|+ .+...++  +|.|..   +.+.+.+.
T Consensus       269 ~e~L~~Lk~~Gv~RISIGvQS~~d~vLk~igR~--ht~e~v~~ai~~ar~~Gf~~In~DLI--~GLPgE---t~ed~~~t  341 (488)
T PRK08207        269 EEKLEVLKKYGVDRISINPQTMNDETLKAIGRH--HTVEDIIEKFHLAREMGFDNINMDLI--IGLPGE---GLEEVKHT  341 (488)
T ss_pred             HHHHHHHHhcCCCeEEEcCCcCCHHHHHHhCCC--CCHHHHHHHHHHHHhCCCCeEEEEEE--eCCCCC---CHHHHHHH
Confidence            456788889999988885544332222344442  234455677889999999 5665665  677765   57888888


Q ss_pred             HHHHHhCCCCEEEEcc--------------CcCcCCHHHHHHHHHHHHhh
Q 015894          254 SKQLYDMGCSEISLGD--------------TIGVGTPGTVIPMLEAVLDA  289 (398)
Q Consensus       254 a~~l~~~Gad~I~L~D--------------T~G~~~P~~v~~lv~~l~~~  289 (398)
                      ++.+.+++++.+.+--              ......+....+++....+.
T Consensus       342 l~~l~~L~pd~isv~~L~i~~gT~l~~~~~~~~~~~~~~~~~m~~~a~~~  391 (488)
T PRK08207        342 LEEIEKLNPESLTVHTLAIKRASRLTENKEKYKVADREEIEKMMEEAEEW  391 (488)
T ss_pred             HHHHHhcCcCEEEEEeceEcCCChHHHhcCcCCCcCHHHHHHHHHHHHHH
Confidence            8999999998776542              22334455555565555544

>PRK12737 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=91.48  E-value=3  Score=41.24  Aligned_cols=118  Identities=14%  Similarity=0.164  Sum_probs=83.4

Q ss_pred             HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEccC-cCcCCHHHHHHHHHHHHhhCCC
Q 015894          215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGDT-IGVGTPGTVIPMLEAVLDAVPV  292 (398)
Q Consensus       215 ~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~DT-~G~~~P~~v~~lv~~l~~~~p~  292 (398)
                      ++++.+.|++.++-|-+ +.         -++.+.+..+++.+.+.+... |.+.-. ...+....+..++..+.++.+ 
T Consensus         6 ~~~~l~~A~~~~yaV~A-fN---------~~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~a~~~~-   74 (284)
T PRK12737          6 TKNMLKKAQAEGYAVPA-FN---------IHNLETLQVVVETAAELRSPVILAGTPGTFSYAGTDYIVAIAEVAARKYN-   74 (284)
T ss_pred             HHHHHHHHHHcCceEEE-EE---------eCCHHHHHHHHHHHHHhCCCEEEEcCccHHhhCCHHHHHHHHHHHHHHCC-
Confidence            56778889999997742 22         146789999999999999875 444332 223344567777888877775 


Q ss_pred             CeEEEEeCCccchHHHHHHHHHHhCCC--EEeeccccCCCCCCCCCCCCCc-cHHHHHHHHHhCC
Q 015894          293 DKLAVHFHDTYGQALSNILASLQMGIS--TVDSSVSGLGGCPYAKGASGNV-ATEDVVYMLNGLG  354 (398)
Q Consensus       293 ~~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGecp~a~graGNa-~lE~vv~~L~~~G  354 (398)
                      +|+.+|  =|.|.-...+..|+++|.+  ++|+|-..+-+         |. -|-+++.+.+..|
T Consensus        75 VPValH--LDH~~~~e~i~~ai~~GftSVMiDgS~lp~ee---------Ni~~T~~vv~~Ah~~g  128 (284)
T PRK12737         75 IPLALH--LDHHEDLDDIKKKVRAGIRSVMIDGSHLSFEE---------NIAIVKEVVEFCHRYD  128 (284)
T ss_pred             CCEEEE--CCCCCCHHHHHHHHHcCCCeEEecCCCCCHHH---------HHHHHHHHHHHHHHcC
Confidence            466655  4777778999999999998  67999887766         55 4566666666443

>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1

Probab=91.47  E-value=9.4  Score=37.81  Aligned_cols=64  Identities=17%  Similarity=0.134  Sum_probs=51.8

Q ss_pred             HHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeecccc
Q 015894          253 VSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSG  327 (398)
Q Consensus       253 ~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~G  327 (398)
                      =++.+.++|+|.|   |-+-..+|  ..++++.+++.| ..++-.-+-|     +..++.++..|+++|-++..|
T Consensus        81 Ea~~L~~~GvDiI---DeTe~lrP--ade~~~~~K~~f-~vpfmad~~~-----l~EAlrai~~GadmI~Tt~e~  144 (287)
T TIGR00343        81 EAQILEALGVDYI---DESEVLTP--ADWTFHIDKKKF-KVPFVCGARD-----LGEALRRINEGAAMIRTKGEA  144 (287)
T ss_pred             HHHHHHHcCCCEE---EccCCCCc--HHHHHHHHHHHc-CCCEEccCCC-----HHHHHHHHHCCCCEEeccccC
Confidence            3778899999999   88889999  688899999888 5555554433     567788999999999999773

This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.

>TIGR01496 DHPS dihydropteroate synthase

Probab=91.42  E-value=1.6  Score=42.45  Aligned_cols=77  Identities=18%  Similarity=0.295  Sum_probs=55.2

Q ss_pred             CCC-CCHHHHHHHHHHHHhCCCCEEEEcc-CcC----cCCHH-H---HHHHHHHHHhhCCCCeEEEEeCCccchHHHHHH
Q 015894          242 EGM-VPPSKVAYVSKQLYDMGCSEISLGD-TIG----VGTPG-T---VIPMLEAVLDAVPVDKLAVHFHDTYGQALSNIL  311 (398)
Q Consensus       242 ~~r-~~~~~l~~~a~~l~~~Gad~I~L~D-T~G----~~~P~-~---v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANal  311 (398)
                      .++ .+++...+.+++..+.||+.|-+.- +..    ...|+ +   +..+|+.+++.+ +.+|.+|.++.     .-..
T Consensus        16 g~~~~~~~~~~~~a~~~~~~GA~iIDIG~~st~p~~~~i~~~~E~~rl~~~v~~~~~~~-~~plsiDT~~~-----~vi~   89 (257)
T TIGR01496        16 GGRFLSVDKAVAHAERMLEEGADIIDVGGESTRPGADRVSPEEELNRVVPVIKALRDQP-DVPISVDTYRA-----EVAR   89 (257)
T ss_pred             CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CCeEEEeCCCH-----HHHH
Confidence            444 4789999999999999999999941 111    11232 3   667777777655 46899999986     4456


Q ss_pred             HHHHhCCCEEeec
Q 015894          312 ASLQMGISTVDSS  324 (398)
Q Consensus       312 aAl~aGa~~VD~S  324 (398)
                      +|+++|+++|+-.
T Consensus        90 ~al~~G~~iINsi  102 (257)
T TIGR01496        90 AALEAGADIINDV  102 (257)
T ss_pred             HHHHcCCCEEEEC
Confidence            7788899998754

This model represents dihydropteroate synthase, the enzyme that catalyzes the second to last step in folic acid biosynthesis. The gene is usually designated folP (folic acid biosynthsis) or sul (sulfanilamide resistance). This model represents one branch of the family of pterin-binding enzymes (pfam00809) and of a cluster of dihydropteroate synthase and related enzymes (COG0294). Other members of pfam00809 and COG0294 are represented by TIGR00284.

>cd01321 ADGF Adenosine deaminase-related growth factors (ADGF), a novel family of secreted growth-factors with sequence similarty to adenosine deaminase

Probab=91.42  E-value=18  Score=36.73  Aligned_cols=159  Identities=13%  Similarity=0.077  Sum_probs=96.7

Q ss_pred             HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHh-C--CCcEEEEEeeeecCCCCCCCCHHHHHHHH
Q 015894          178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARE-L--SIPVRGYLSCVVGCPVEGMVPPSKVAYVS  254 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~-~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a  254 (398)
                      ++.+.+-|+..+-+..+....+...+-+.+.++.++.+.+.++.+++ .  |+.++.-++..      -..+++...+.+
T Consensus        76 ~~d~~~dgV~Y~Eir~~P~~~~~~~~~g~~~~~v~~av~~~~~~~~~~~~~~i~v~lI~~~~------R~~~~e~~~e~~  149 (345)
T cd01321          76 LEELYEDNVQYVELRSSFSPLYDLDGREYDYEETVQLLEEVVEKFKKTHPDFIGLKIIYATL------RNFNDSEIKESM  149 (345)
T ss_pred             HHHHHHcCCEEEEEeecchHHHHccCCCCCHHHHHHHHHHHHHHHHHhCCCCceEEEEEEec------CCCCHHHHHHHH
Confidence            45667788877666554322233324578999999999888777643 3  45555333311      123566655555


Q ss_pred             HHHHhC---CCCEEEEccCcCc---C-CHHHHHHHHHHHHhhCCCCeEEEEeCCccc--hH-HHHHHHHHHhCCCEEeec
Q 015894          255 KQLYDM---GCSEISLGDTIGV---G-TPGTVIPMLEAVLDAVPVDKLAVHFHDTYG--QA-LSNILASLQMGISTVDSS  324 (398)
Q Consensus       255 ~~l~~~---Gad~I~L~DT~G~---~-~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~G--lA-~ANalaAl~aGa~~VD~S  324 (398)
                      +.+..+   ..+.|.=-|-.|-   . .|....+.+...++.-+++++.+|+=...+  .. ..|...|+..|+++|+=.
T Consensus       150 ~~a~~~~~~~~~~VvGidL~G~E~~~~~~~~f~~~f~~ar~~g~~l~~t~HAGE~~~~~~~~~~~v~~al~lg~~RIGHG  229 (345)
T cd01321         150 EQCLNLKKKFPDFIAGFDLVGQEDAGRPLLDFLPQLLWFPKQCAEIPFFFHAGETNGDGTETDENLVDALLLNTKRIGHG  229 (345)
T ss_pred             HHHHHHHHhCCCeEEEEecCCCccCCCCHHHHHHHHHHHHHhCCCCceEeecCCCcCCCCCChhHHHHHHHhCCCcCccc
Confidence            555543   2222333344442   2 367778888888876555789999876653  22 347788888999998655


Q ss_pred             cccCCCCCCCCCCCCCccHHHHHHHHHhCCC
Q 015894          325 VSGLGGCPYAKGASGNVATEDVVYMLNGLGV  355 (398)
Q Consensus       325 v~GlGecp~a~graGNa~lE~vv~~L~~~Gi  355 (398)
                      +.-...             ++++..|++.+|
T Consensus       230 ~~~~~d-------------p~ll~~l~~~~I  247 (345)
T cd01321         230 FALPKH-------------PLLMDLVKKKNI  247 (345)
T ss_pred             cccCcC-------------HHHHHHHHHcCC
Confidence            553322             567777776655

>PRK08508 biotin synthase; Provisional

Probab=91.39  E-value=0.85  Score=44.74  Aligned_cols=117  Identities=15%  Similarity=0.042  Sum_probs=61.4

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHH
Q 015894          206 CTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEA  285 (398)
Q Consensus       206 ~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~  285 (398)
                      .+.++.++.    ++.+++.|..- +.+.. .| ......+.+++.++++.+.+.+.+ +.++-+.|.++++.+..+-++
T Consensus        40 ~s~eeI~~~----a~~a~~~g~~~-~~lv~-sg-~~~~~~~~e~~~ei~~~ik~~~p~-l~i~~s~G~~~~e~l~~Lk~a  111 (279)
T PRK08508         40 KDIEQIVQE----AKMAKANGALG-FCLVT-SG-RGLDDKKLEYVAEAAKAVKKEVPG-LHLIACNGTASVEQLKELKKA  111 (279)
T ss_pred             CCHHHHHHH----HHHHHHCCCCE-EEEEe-cc-CCCCcccHHHHHHHHHHHHhhCCC-cEEEecCCCCCHHHHHHHHHc
Confidence            466665554    45556667632 22211 11 111123567888888888766543 234446788887766665444


Q ss_pred             HHhhCC-CC----eEE--EEeCCccchHHHHHHHHHHhCCCEEeeccccCCC
Q 015894          286 VLDAVP-VD----KLA--VHFHDTYGQALSNILASLQMGISTVDSSVSGLGG  330 (398)
Q Consensus       286 l~~~~p-~~----~l~--~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGe  330 (398)
                      =...++ ++    .+-  ++.-.++.--+.....|-++|...-.+-+.|+||
T Consensus       112 Gld~~~~~lEt~~~~~~~i~~~~~~~~~l~~i~~a~~~Gi~v~sg~I~GlGE  163 (279)
T PRK08508        112 GIFSYNHNLETSKEFFPKICTTHTWEERFQTCENAKEAGLGLCSGGIFGLGE  163 (279)
T ss_pred             CCCEEcccccchHHHhcCCCCCCCHHHHHHHHHHHHHcCCeecceeEEecCC
Confidence            111222 00    010  1111233344555556778888777778888888

>PRK13111 trpA tryptophan synthase subunit alpha; Provisional

Probab=91.38  E-value=7.9  Score=37.73  Aligned_cols=152  Identities=19%  Similarity=0.202  Sum_probs=86.0

Q ss_pred             HHHHHHcCCCEEEEeccCchHHHh-----------hhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCC
Q 015894          178 FEAAVAAGAKEVAIFASASESFSK-----------SNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGM  244 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~Sd~~~~-----------~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r  244 (398)
                      ++...+.|+|.+-+-++.||....           .+-|.+.++.++    .++..|+.  ..++  .+| ...+|.. .
T Consensus        32 ~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~~AL~~G~~~~~~~~----~~~~~r~~~~~~p~--vlm-~Y~N~i~-~  103 (258)
T PRK13111         32 IKALVEAGADIIELGIPFSDPVADGPVIQAASLRALAAGVTLADVFE----LVREIREKDPTIPI--VLM-TYYNPIF-Q  103 (258)
T ss_pred             HHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHH----HHHHHHhcCCCCCE--EEE-ecccHHh-h
Confidence            445667899999999998886211           111334444444    34444433  3332  133 2212221 2


Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894          245 VPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       245 ~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S  324 (398)
                      +..   .++++.+.++|++.+-++|-    .|++..+++..+++. .-..|-+ +=.+.-..-...+++..-|.=++ ++
T Consensus       104 ~G~---e~f~~~~~~aGvdGviipDL----p~ee~~~~~~~~~~~-gl~~I~l-vap~t~~eri~~i~~~s~gfIY~-vs  173 (258)
T PRK13111        104 YGV---ERFAADAAEAGVDGLIIPDL----PPEEAEELRAAAKKH-GLDLIFL-VAPTTTDERLKKIASHASGFVYY-VS  173 (258)
T ss_pred             cCH---HHHHHHHHHcCCcEEEECCC----CHHHHHHHHHHHHHc-CCcEEEE-eCCCCCHHHHHHHHHhCCCcEEE-Ee
Confidence            223   34677788999999999993    678888999888774 3223433 33333334455566665554333 47


Q ss_pred             cccCCCCCCCCCCCCC-ccHHHHHHHHHh
Q 015894          325 VSGLGGCPYAKGASGN-VATEDVVYMLNG  352 (398)
Q Consensus       325 v~GlGecp~a~graGN-a~lE~vv~~L~~  352 (398)
                      +.|..+     .+++. ..+++.+..+++
T Consensus       174 ~~GvTG-----~~~~~~~~~~~~i~~vk~  197 (258)
T PRK13111        174 RAGVTG-----ARSADAADLAELVARLKA  197 (258)
T ss_pred             CCCCCC-----cccCCCccHHHHHHHHHh
Confidence            777544     02232 467778888875

>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA)

Probab=91.31  E-value=1.9  Score=42.95  Aligned_cols=82  Identities=17%  Similarity=0.104  Sum_probs=70.1

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcC---cCCHHHHHHHHHHHHhhCC-CCeEEEEeC-CccchHHHHHHHHHHhC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIG---VGTPGTVIPMLEAVLDAVP-VDKLAVHFH-DTYGQALSNILASLQMG  317 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~lv~~l~~~~p-~~~l~~H~H-nd~GlA~ANalaAl~aG  317 (398)
                      +..|.+.+.++++.+.+.|++.|.+.-|+|   .++.++-.++++..++... .+++-+|.- ++.--++..+..|-++|
T Consensus        24 g~iD~~~l~~lv~~li~~Gv~Gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~grvpvi~Gv~~~~t~~ai~~a~~A~~~G  103 (309)
T cd00952          24 DTVDLDETARLVERLIAAGVDGILTMGTFGECATLTWEEKQAFVATVVETVAGRVPVFVGATTLNTRDTIARTRALLDLG  103 (309)
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECcccccchhCCHHHHHHHHHHHHHHhCCCCCEEEEeccCCHHHHHHHHHHHHHhC
Confidence            578999999999999999999999999999   4677888888888887764 467778774 78899999999999999


Q ss_pred             CCEEeec
Q 015894          318 ISTVDSS  324 (398)
Q Consensus       318 a~~VD~S  324 (398)
                      |+.|=+.
T Consensus       104 ad~vlv~  110 (309)
T cd00952         104 ADGTMLG  110 (309)
T ss_pred             CCEEEEC
Confidence            9977655

HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.

>PRK14335 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=91.28  E-value=8.9  Score=40.29  Aligned_cols=144  Identities=10%  Similarity=0.083  Sum_probs=86.5

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecC--CC-C--CcccCCCCHHHHHHHHH---h-ccCCcEEEE---eCC---HhhHH
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSF--VS-P--KWVPQLADAKDVMAAIQ---N-VEGARFPVL---TPN---LKGFE  179 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~--~~-~--~~~p~~~D~~~v~~~i~---~-~~~~~l~~l---~~n---~~~ie  179 (398)
                      ..+.+..++-++.|.+.|++.|.+...  .. .  ..........+++..+.   . ..+.....+   -+.   .+-++
T Consensus       180 sr~~e~Vv~Ei~~l~~~G~~ei~l~g~~~~~y~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~ir~~s~~p~~i~~ell~  259 (455)
T PRK14335        180 SRDLDAILQEIDVLSEKGVREITLLGQNVNSYRGRDREGNIVTFPQLLRHIVRRAEVTDQIRWIRFMSSHPKDLSDDLIA  259 (455)
T ss_pred             cCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccccCCccCHHHHHHHHHHhhcccCCceEEEEeecCcccCCHHHHH
Confidence            467888888889999999988866421  11 0  00001113445555542   1 223322222   222   23355


Q ss_pred             HHHH--cCCCEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHH
Q 015894          180 AAVA--AGAKEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVS  254 (398)
Q Consensus       180 ~a~~--~Gv~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a  254 (398)
                      ...+  .|...+++-+ +.|+.-++ .+|+.  ...+.+.++++.+++.  |+.+.+.++  +|.|.+   +.+.+.+.+
T Consensus       260 ~m~~~~~gc~~l~iglQSgsd~vLk-~m~R~--~t~e~~~~~v~~ir~~~pgi~i~~d~I--vGfPgE---T~edf~~Tl  331 (455)
T PRK14335        260 TIAQESRLCRLVHLPVQHGSNGVLK-RMNRS--YTREHYLSLVGKLKASIPNVALSTDIL--IGFPGE---TEEDFEQTL  331 (455)
T ss_pred             HHHhCCCCCCeEEEccCcCCHHHHH-HcCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEE--EeCCCC---CHHHHHHHH
Confidence            5555  4789999977 55665554 35542  2345666778888888  887776666  677765   467777777


Q ss_pred             HHHHhCCCCEEE
Q 015894          255 KQLYDMGCSEIS  266 (398)
Q Consensus       255 ~~l~~~Gad~I~  266 (398)
                      +.+.+.+.+.+.
T Consensus       332 ~~i~~l~~~~~~  343 (455)
T PRK14335        332 DLMREVEFDSAF  343 (455)
T ss_pred             HHHHhcCCCeEE
Confidence            778888877543

>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene []

Probab=91.18  E-value=4  Score=38.13  Aligned_cols=150  Identities=18%  Similarity=0.176  Sum_probs=85.3

Q ss_pred             HHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEE------------eCCHhhHHHHHHcCCCEEE
Q 015894          123 ELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVL------------TPNLKGFEAAVAAGAKEVA  190 (398)
Q Consensus       123 ~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l------------~~n~~~ie~a~~~Gv~~v~  190 (398)
                      +++++-...|-..|-+.+            .++ ++.+++..+..+.++            +|+.++++..+++|++.|.
T Consensus         3 ~mA~Aa~~gGA~giR~~~------------~~d-I~aik~~v~lPIIGi~K~~y~~~~V~ITPT~~ev~~l~~aGadIIA   69 (192)
T PF04131_consen    3 RMAKAAEEGGAVGIRANG------------VED-IRAIKKAVDLPIIGIIKRDYPDSDVYITPTLKEVDALAEAGADIIA   69 (192)
T ss_dssp             HHHHHHHHCT-SEEEEES------------HHH-HHHHHTTB-S-EEEE-B-SBTTSS--BS-SHHHHHHHHHCT-SEEE
T ss_pred             HHHHHHHHCCceEEEcCC------------HHH-HHHHHHhcCCCEEEEEeccCCCCCeEECCCHHHHHHHHHcCCCEEE
Confidence            566666777777776653            222 344554334333333            3567889999999999999


Q ss_pred             EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEE----
Q 015894          191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEIS----  266 (398)
Q Consensus       191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~----  266 (398)
                      +=...          ..+.   +.+.++++..|+.+..+.+.+           .+.|+    +..+.++|+|.|.    
T Consensus        70 lDaT~----------R~Rp---~~l~~li~~i~~~~~l~MADi-----------st~ee----~~~A~~~G~D~I~TTLs  121 (192)
T PF04131_consen   70 LDATD----------RPRP---ETLEELIREIKEKYQLVMADI-----------STLEE----AINAAELGFDIIGTTLS  121 (192)
T ss_dssp             EE-SS----------SS-S---S-HHHHHHHHHHCTSEEEEE------------SSHHH----HHHHHHTT-SEEE-TTT
T ss_pred             EecCC----------CCCC---cCHHHHHHHHHHhCcEEeeec-----------CCHHH----HHHHHHcCCCEEEcccc
Confidence            84331          2223   445577888888884333222           23333    5567789999984    


Q ss_pred             --EccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894          267 --LGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       267 --L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                        -.+|.| -.|  =.++++.+.+.  +.++-.-+|-+.   ...+..|+++||..|
T Consensus       122 GYT~~t~~-~~p--D~~lv~~l~~~--~~pvIaEGri~t---pe~a~~al~~GA~aV  170 (192)
T PF04131_consen  122 GYTPYTKG-DGP--DFELVRELVQA--DVPVIAEGRIHT---PEQAAKALELGAHAV  170 (192)
T ss_dssp             TSSTTSTT-SSH--HHHHHHHHHHT--TSEEEEESS--S---HHHHHHHHHTT-SEE
T ss_pred             cCCCCCCC-CCC--CHHHHHHHHhC--CCcEeecCCCCC---HHHHHHHHhcCCeEE
Confidence              466666 333  34667777764  346655444332   466788999999865

; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.

>PRK07360 FO synthase subunit 2; Reviewed

Probab=91.17  E-value=2.1  Score=43.70  Aligned_cols=77  Identities=14%  Similarity=0.286  Sum_probs=57.9

Q ss_pred             CCCHHHHHHHHHHHHhCCCCEEEEccCcCcCC--HHHHHHHHHHHHhhCCCCeEEEEe---------CCccchHHHHHHH
Q 015894          244 MVPPSKVAYVSKQLYDMGCSEISLGDTIGVGT--PGTVIPMLEAVLDAVPVDKLAVHF---------HDTYGQALSNILA  312 (398)
Q Consensus       244 r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~--P~~v~~lv~~l~~~~p~~~l~~H~---------Hnd~GlA~ANala  312 (398)
                      +.+++.+.+.++++.++|+.+|.|..-.+...  ++.+.++++.+++.+|.  +.+|.         -.+.|+..-..+.
T Consensus        90 ~ls~eeI~~~a~~a~~~G~~~i~l~~G~~p~~~~~e~~~~~i~~ik~~~~~--i~i~a~s~~ei~~~~~~~G~~~~e~l~  167 (371)
T PRK07360         90 WLTIAEILEKAAEAVKRGATEVCIQGGLHPAADSLEFYLEILEAIKEEFPD--IHLHAFSPMEVYFAAREDGLSYEEVLK  167 (371)
T ss_pred             eCCHHHHHHHHHHHHhCCCCEEEEccCCCCCCCcHHHHHHHHHHHHHhCCC--cceeeCCHHHHHHHHhhcCCCHHHHHH
Confidence            46899999999999999999999993212221  45688999999988875  33442         3367888777776


Q ss_pred             HH-HhCCCEEe
Q 015894          313 SL-QMGISTVD  322 (398)
Q Consensus       313 Al-~aGa~~VD  322 (398)
                      .+ +||++.+.
T Consensus       168 ~LkeAGld~~~  178 (371)
T PRK07360        168 ALKDAGLDSMP  178 (371)
T ss_pred             HHHHcCCCcCC
Confidence            66 59999885

>PRK13745 anaerobic sulfatase-maturase; Provisional

Probab=91.08  E-value=20  Score=37.10  Aligned_cols=140  Identities=11%  Similarity=0.013  Sum_probs=80.7

Q ss_pred             CCCHHHHHHHHHHHHhc-CCCEEEEecCCCCCcccCCCC---HHHHHHHHHh-cc--CCcEEEEeC----CHhhHHHHHH
Q 015894          115 IVPAVVKVELIKLLVSS-GLAVVEATSFVSPKWVPQLAD---AKDVMAAIQN-VE--GARFPVLTP----NLKGFEAAVA  183 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~a-Gv~~IEvG~~~~~~~~p~~~D---~~~v~~~i~~-~~--~~~l~~l~~----n~~~ie~a~~  183 (398)
                      .++.+.-.++++.+.+. |++.+.+.+....   |-+..   ..++.+.+++ ..  ++.+...+-    +.+-++...+
T Consensus        47 ~ms~e~~~~~i~~~~~~~~~~~v~i~f~GGE---PlL~~~~~~~~~~~~~~~~~~~~~i~~~i~TNG~ll~~e~~~~l~~  123 (412)
T PRK13745         47 VMSDELLEKFIKEYINSQTMPQVLFTWHGGE---TLMRPLSFYKKALELQKKYARGRQIDNCIQTNGTLLTDEWCEFFRE  123 (412)
T ss_pred             CCCHHHHHHHHHHHHHcCCCCeEEEEEEccc---cCCCcHHHHHHHHHHHHHHcCCCceEEEEeecCEeCCHHHHHHHHH
Confidence            47888888888877654 7788888654321   32332   2223344332 12  233333222    2344566677


Q ss_pred             cCCCEEEEeccCc-hHHHhhhcCCC--HHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC
Q 015894          184 AGAKEVAIFASAS-ESFSKSNINCT--IEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM  260 (398)
Q Consensus       184 ~Gv~~v~i~~~~S-d~~~~~~~~~s--~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~  260 (398)
                      .++ .|.|.+... +.|-  .++.+  -...++++.+.++.++++|+.+.  +.+++     ++.+.+++.++++.+.+.
T Consensus       124 ~~~-~v~ISlDG~~~~hD--~~R~~~~g~gsf~~v~~~i~~l~~~gi~~~--i~~vv-----~~~n~~~~~e~~~~~~~l  193 (412)
T PRK13745        124 NNF-LVGVSIDGPQEFHD--EYRKNKMGKPSFVKVMKGINLLKKHGVEWN--AMAVV-----NDFNADYPLDFYHFFKEL  193 (412)
T ss_pred             cCe-EEEEEecCCHHHhh--hhcCCCCCCccHHHHHHHHHHHHHcCCCEE--EEEEE-----cCCccccHHHHHHHHHHc
Confidence            886 777754433 3332  12221  12357777777888889998765  33333     234456677788888899


Q ss_pred             CCCEEEE
Q 015894          261 GCSEISL  267 (398)
Q Consensus       261 Gad~I~L  267 (398)
                      |++.+.+
T Consensus       194 g~~~~~~  200 (412)
T PRK13745        194 DCHYIQF  200 (412)
T ss_pred             CCCeEEE
Confidence            9987755

>PRK05265 pyridoxine 5'-phosphate synthase; Provisional

Probab=91.04  E-value=0.86  Score=43.88  Aligned_cols=116  Identities=20%  Similarity=0.252  Sum_probs=73.3

Q ss_pred             HHHHHHHhc--cCCcEEEEe-CCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEE
Q 015894          155 DVMAAIQNV--EGARFPVLT-PNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRG  231 (398)
Q Consensus       155 ~v~~~i~~~--~~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~  231 (398)
                      .+...++++  .+++++.++ |+.++++.|.+.|++.|-++..   .|... ++...++.++++..+.++|+++|+.|.+
T Consensus       114 ~l~~~i~~L~~~gIrVSLFidP~~~qi~~A~~~GAd~VELhTG---~yA~a-~~~~~~~el~~~~~aa~~a~~lGL~VnA  189 (239)
T PRK05265        114 KLKPAIARLKDAGIRVSLFIDPDPEQIEAAAEVGADRIELHTG---PYADA-KTEAEAAELERIAKAAKLAASLGLGVNA  189 (239)
T ss_pred             HHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEech---hhhcC-CCcchHHHHHHHHHHHHHHHHcCCEEec
Confidence            333444433  356666666 6788999999999999998765   22222 1223355699999999999999999862


Q ss_pred             EEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE-----ccCcCcCCHHHHHHHHHHHH
Q 015894          232 YLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL-----GDTIGVGTPGTVIPMLEAVL  287 (398)
Q Consensus       232 ~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L-----~DT~G~~~P~~v~~lv~~l~  287 (398)
                                ..-.+.+.+..+++   --+...++|     ++..=++.+..|+++.+.+.
T Consensus       190 ----------GHgLny~Nv~~i~~---ip~i~EvnIGHsiia~Al~~Gl~~aV~~m~~~i~  237 (239)
T PRK05265        190 ----------GHGLNYHNVKPIAA---IPGIEELNIGHAIIARALFVGLEEAVREMKRLMD  237 (239)
T ss_pred             ----------CCCCCHHhHHHHhh---CCCCeEEccCHHHHHHHHHHhHHHHHHHHHHHHh
Confidence                      12245555555421   124555554     45555566666666665554

>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional

Probab=91.03  E-value=2.6  Score=44.93  Aligned_cols=70  Identities=11%  Similarity=0.125  Sum_probs=52.6

Q ss_pred             HHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccc
Q 015894          251 AYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVS  326 (398)
Q Consensus       251 ~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~  326 (398)
                      .+.++.+.++|++.|.+ |+.- .....+.+.++.+++.+|+.+|..    -...-...+..++++||+.|.+++.
T Consensus       243 ~~~~~~l~~ag~d~i~i-d~a~-G~s~~~~~~i~~ik~~~~~~~v~a----G~V~t~~~a~~~~~aGad~I~vg~g  312 (495)
T PTZ00314        243 IERAAALIEAGVDVLVV-DSSQ-GNSIYQIDMIKKLKSNYPHVDIIA----GNVVTADQAKNLIDAGADGLRIGMG  312 (495)
T ss_pred             HHHHHHHHHCCCCEEEE-ecCC-CCchHHHHHHHHHHhhCCCceEEE----CCcCCHHHHHHHHHcCCCEEEECCc
Confidence            67788899999999888 4432 333445788999999999877777    1223346788899999999998554

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=90.99  E-value=6.3  Score=41.42  Aligned_cols=162  Identities=17%  Similarity=0.167  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh-ccCCcEEE-EeCCHhhHHHHHHcCCCEEEEeccCc
Q 015894          119 VVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN-VEGARFPV-LTPNLKGFEAAVAAGAKEVAIFASAS  196 (398)
Q Consensus       119 ~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~-~~~~~l~~-l~~n~~~ie~a~~~Gv~~v~i~~~~S  196 (398)
                      +.-.+-+..|.++|++.|++-......     ....+.++.+++ .|+..+.+ -+-+.++.+.++++|+|.|.+-++.-
T Consensus       223 ~~~~~r~~~L~~aG~d~I~vd~a~g~~-----~~~~~~i~~i~~~~~~~~vi~G~v~t~~~a~~l~~aGad~i~vg~g~G  297 (450)
T TIGR01302       223 EFDKERAEALVKAGVDVIVIDSSHGHS-----IYVIDSIKEIKKTYPDLDIIAGNVATAEQAKALIDAGADGLRVGIGPG  297 (450)
T ss_pred             hhHHHHHHHHHHhCCCEEEEECCCCcH-----hHHHHHHHHHHHhCCCCCEEEEeCCCHHHHHHHHHhCCCEEEECCCCC
Confidence            345677779999999999997532110     122344444553 35555443 34578899999999999998854211


Q ss_pred             hH-HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCC
Q 015894          197 ES-FSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGT  275 (398)
Q Consensus       197 d~-~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~  275 (398)
                      -+ .-+...++... .+..+.++.+.+++.++++-+         +.+-.++.++   ++ +.++||+.+.+.-.     
T Consensus       298 ~~~~t~~~~~~g~p-~~~~i~~~~~~~~~~~vpvia---------dGGi~~~~di---~k-Ala~GA~~V~~G~~-----  358 (450)
T TIGR01302       298 SICTTRIVAGVGVP-QITAVYDVAEYAAQSGIPVIA---------DGGIRYSGDI---VK-ALAAGADAVMLGSL-----  358 (450)
T ss_pred             cCCccceecCCCcc-HHHHHHHHHHHHhhcCCeEEE---------eCCCCCHHHH---HH-HHHcCCCEEEECch-----
Confidence            00 00111223222 345566777888888877531         3343445443   33 34689999987653     


Q ss_pred             HHHHHHHHHHHHhhCCCCeE---EEEeCCccchHHHHHHH
Q 015894          276 PGTVIPMLEAVLDAVPVDKL---AVHFHDTYGQALSNILA  312 (398)
Q Consensus       276 P~~v~~lv~~l~~~~p~~~l---~~H~Hnd~GlA~ANala  312 (398)
                             +..- ++.|..-+   +-+.-.-+||+...++.
T Consensus       359 -------~a~~-~e~pg~~~~~~g~~~k~yrgm~s~~a~~  390 (450)
T TIGR01302       359 -------LAGT-TESPGEYEIINGRRYKQYRGMGSLGAMT  390 (450)
T ss_pred             -------hhcC-CcCCCceEEECCEEEEEEeccchHHHHh
Confidence                   2221 23454322   23445568999665543

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917

Probab=90.97  E-value=2.5  Score=40.23  Aligned_cols=89  Identities=17%  Similarity=0.198  Sum_probs=67.2

Q ss_pred             HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894          178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL  257 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l  257 (398)
                      +....++|...|.+|---         |   -+.++.++.+.+.|.++|+.++          -.+-.|.+.+.++.+.+
T Consensus       141 iaml~dmG~~SiKffPM~---------G---l~~leE~~avA~aca~~g~~lE----------PTGGIdl~Nf~~I~~i~  198 (236)
T TIGR03581       141 IAMLKDMGGSSVKFFPMG---------G---LKHLEEYAAVAKACAKHGFYLE----------PTGGIDLDNFEEIVQIA  198 (236)
T ss_pred             HHHHHHcCCCeeeEeecC---------C---cccHHHHHHHHHHHHHcCCccC----------CCCCccHHhHHHHHHHH
Confidence            344567899999886321         1   1346778888999999998754          24457899999999999


Q ss_pred             HhCCCCEE-------EEccCcCcCCHHHHHHHHHHHHh
Q 015894          258 YDMGCSEI-------SLGDTIGVGTPGTVIPMLEAVLD  288 (398)
Q Consensus       258 ~~~Gad~I-------~L~DT~G~~~P~~v~~lv~~l~~  288 (398)
                      .++|+..|       .|--..|.-.|++|++++..+++
T Consensus       199 ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~~k~  236 (236)
T TIGR03581       199 LDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIVKK  236 (236)
T ss_pred             HHcCCCeeccccceeccccccCCCCHHHHHHHHHHhhC
Confidence            99998765       34456799999999999998763

Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.

>PF04055 Radical_SAM: Radical SAM superfamily; InterPro: IPR007197 Radical SAM proteins catalyze diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation

Probab=90.96  E-value=5.7  Score=33.78  Aligned_cols=132  Identities=17%  Similarity=0.153  Sum_probs=79.2

Q ss_pred             CCCCHHHHHHHHHHH-HhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc--cCCcEEEEeC----CHhhHHHHHHcCC
Q 015894          114 NIVPAVVKVELIKLL-VSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV--EGARFPVLTP----NLKGFEAAVAAGA  186 (398)
Q Consensus       114 ~~~~~~~k~~ia~~L-~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~--~~~~l~~l~~----n~~~ie~a~~~Gv  186 (398)
                      ..++.++.++.++.+ .+.|+..+..+..- |-..   .+....+..+.+.  .+.++...+.    +.+.++...+.|.
T Consensus        26 ~~~~~e~i~~~~~~~~~~~~~~~i~~~~ge-p~~~---~~~~~~~~~~~~~~~~~~~i~~~t~~~~~~~~~l~~l~~~~~  101 (166)
T PF04055_consen   26 REMSPEEILEEIKELKQDKGVKEIFFGGGE-PTLH---PDFIELLELLRKIKKRGIRISINTNGTLLDEELLDELKKLGV  101 (166)
T ss_dssp             EECHHHHHHHHHHHHHHHTTHEEEEEESST-GGGS---CHHHHHHHHHHHCTCTTEEEEEEEESTTHCHHHHHHHHHTTC
T ss_pred             ccCCHHHHHHHHHHHhHhcCCcEEEEeecC-CCcc---hhHHHHHHHHHHhhccccceeeeccccchhHHHHHHHHhcCc
Confidence            468899999999999 69898888887421 2111   1233344444433  3555555442    2566888899999


Q ss_pred             CEEEEeccCchHH-HhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHH
Q 015894          187 KEVAIFASASESF-SKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQ  256 (398)
Q Consensus       187 ~~v~i~~~~Sd~~-~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~  256 (398)
                      +.+.+.+...+-. ....++  +....+.+.+.++.+++.|+.....++  ++.|..   +.+++.++++.
T Consensus       102 ~~i~~~l~s~~~~~~~~~~~--~~~~~~~~~~~l~~l~~~g~~~~~~~i--~~~~~~---~~~e~~~~~~~  165 (166)
T PF04055_consen  102 DRIRISLESLDEESVLRIIN--RGKSFERVLEALERLKEAGIPRVIIFI--VGLPGE---NDEEIEETIRF  165 (166)
T ss_dssp             SEEEEEEBSSSHHHHHHHHS--STSHHHHHHHHHHHHHHTTSETEEEEE--EEBTTT---SHHHHHHHHHH
T ss_pred             cEEecccccCCHHHhhhhhc--CCCCHHHHHHHHHHHHHcCCCcEEEEE--EEeCCC---CHHHHHHHhCc
Confidence            9998855444433 344443  223445566778899999987322233  334543   45666666653

Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].; GO: 0003824 catalytic activity, 0051536 iron-sulfur cluster binding; PDB: 2A5H_D 3T7V_A 3C8F_A 3CB8_A 2FB2_A 2FB3_A 3CIX_A 3IIX_A 3IIZ_A 3CIW_A ....

>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase

Probab=90.95  E-value=1.3  Score=40.88  Aligned_cols=99  Identities=12%  Similarity=0.088  Sum_probs=64.0

Q ss_pred             CCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEE--EeCCccchHHHHHHHHHHhCCCEE
Q 015894          244 MVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAV--HFHDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       244 r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~--H~Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                      ..+++...++++.+ +-|++.|-+  +.-..+|.. .+.++.+++.+|+..+.+  |.+ |.|  .-.+..+.++||+.|
T Consensus         8 ~~~~~~a~~~~~~l-~~~v~~iev--~~~l~~~~g-~~~i~~l~~~~~~~~i~~d~k~~-d~~--~~~~~~~~~~Gad~i   80 (206)
T TIGR03128         8 LLDIEEALELAEKV-ADYVDIIEI--GTPLIKNEG-IEAVKEMKEAFPDRKVLADLKTM-DAG--EYEAEQAFAAGADIV   80 (206)
T ss_pred             CCCHHHHHHHHHHc-ccCeeEEEe--CCHHHHHhC-HHHHHHHHHHCCCCEEEEEEeec-cch--HHHHHHHHHcCCCEE
Confidence            36789999999988 788887766  222334443 577889998887544554  455 333  225677889999988


Q ss_pred             eeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccC
Q 015894          322 DSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVD  360 (398)
Q Consensus       322 D~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iD  360 (398)
                      -+-.    +       +++..+++++...+++|+...++
T Consensus        81 ~vh~----~-------~~~~~~~~~i~~~~~~g~~~~~~  108 (206)
T TIGR03128        81 TVLG----V-------ADDATIKGAVKAAKKHGKEVQVD  108 (206)
T ss_pred             EEec----c-------CCHHHHHHHHHHHHHcCCEEEEE
Confidence            5331    1       22334567777777777665544

at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.

>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed

Probab=90.90  E-value=1.9  Score=45.72  Aligned_cols=69  Identities=12%  Similarity=0.152  Sum_probs=54.3

Q ss_pred             HHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeecc
Q 015894          251 AYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSV  325 (398)
Q Consensus       251 ~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv  325 (398)
                      .+.++.+.++|++.|.+-++-|.  +..+.+.++.+++.+|+.+|.+    -.+.-...+..++++||+.|++.+
T Consensus       230 ~e~a~~L~~agvdvivvD~a~g~--~~~vl~~i~~i~~~~p~~~vi~----g~v~t~e~a~~l~~aGad~i~vg~  298 (486)
T PRK05567        230 EERAEALVEAGVDVLVVDTAHGH--SEGVLDRVREIKAKYPDVQIIA----GNVATAEAARALIEAGADAVKVGI  298 (486)
T ss_pred             HHHHHHHHHhCCCEEEEECCCCc--chhHHHHHHHHHhhCCCCCEEE----eccCCHHHHHHHHHcCCCEEEECC
Confidence            57788899999998765444344  5789999999999998878777    345556778899999999999644

>PLN02495 oxidoreductase, acting on the CH-CH group of donors

Probab=90.86  E-value=7.9  Score=40.00  Aligned_cols=84  Identities=8%  Similarity=0.079  Sum_probs=57.3

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEE--c--cC-----cC---cCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHH
Q 015894          245 VPPSKVAYVSKQLYDMGCSEISL--G--DT-----IG---VGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILA  312 (398)
Q Consensus       245 ~~~~~l~~~a~~l~~~Gad~I~L--~--DT-----~G---~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANala  312 (398)
                      .+++.+.++++.+.+.|+|.|.|  .  .+     .|   .-.|+.++++++.+++... +||-+-.=-+..-=..-+.+
T Consensus       124 ~s~~~~~~~a~~~e~~GaD~iELNiSCPn~~~~r~~g~~~gq~~e~~~~i~~~Vk~~~~-iPv~vKLsPn~t~i~~ia~a  202 (385)
T PLN02495        124 YNKDAWEEIIERVEETGVDALEINFSCPHGMPERKMGAAVGQDCDLLEEVCGWINAKAT-VPVWAKMTPNITDITQPARV  202 (385)
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcCccchhhccCHHHHHHHHHHHHHhhc-CceEEEeCCChhhHHHHHHH
Confidence            46899999999999999997654  1  22     11   2469999999999987653 46666666555443345555


Q ss_pred             HHHhCCCEE---eeccccCC
Q 015894          313 SLQMGISTV---DSSVSGLG  329 (398)
Q Consensus       313 Al~aGa~~V---D~Sv~GlG  329 (398)
                      |.++||+.|   ++...+++
T Consensus       203 a~~~Gadgi~liNT~~~~~~  222 (385)
T PLN02495        203 ALKSGCEGVAAINTIMSVMG  222 (385)
T ss_pred             HHHhCCCEEEEecccCcccc
Confidence            778999854   55544444

>PRK13209 L-xylulose 5-phosphate 3-epimerase; Reviewed

Probab=90.83  E-value=5.6  Score=38.35  Aligned_cols=167  Identities=14%  Similarity=0.085  Sum_probs=81.0

Q ss_pred             HHHHHHHhcCCCEEEEecCCCCCcc-c-CC--CCHHHHHHHHHhccCCcEEEEeC-----------CH-----------h
Q 015894          123 ELIKLLVSSGLAVVEATSFVSPKWV-P-QL--ADAKDVMAAIQNVEGARFPVLTP-----------NL-----------K  176 (398)
Q Consensus       123 ~ia~~L~~aGv~~IEvG~~~~~~~~-p-~~--~D~~~v~~~i~~~~~~~l~~l~~-----------n~-----------~  176 (398)
                      +.++.+.++|++.||+.......+. + .+  .+.+++.+.+++ .++++.+++.           +.           +
T Consensus        25 e~~~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~gl~i~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  103 (283)
T PRK13209         25 EKLAIAKTAGFDFVEMSVDESDERLARLDWSREQRLALVNALVE-TGFRVNSMCLSAHRRFPLGSEDDAVRAQALEIMRK  103 (283)
T ss_pred             HHHHHHHHcCCCeEEEecCccccchhccCCCHHHHHHHHHHHHH-cCCceeEEecccccccCCCCCCHHHHHHHHHHHHH
Confidence            4566667999999999753211110 0 00  122233333332 3455543321           10           1


Q ss_pred             hHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHH
Q 015894          177 GFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQ  256 (398)
Q Consensus       177 ~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~  256 (398)
                      .++.|.+.|++.|.+....  ...........+...+.++++.++|+++|+.+.  +...   +...-.+++...++++ 
T Consensus       104 ~i~~a~~lG~~~i~~~~~~--~~~~~~~~~~~~~~~~~l~~l~~~A~~~GV~i~--iE~~---~~~~~~~~~~~~~ll~-  175 (283)
T PRK13209        104 AIQLAQDLGIRVIQLAGYD--VYYEQANNETRRRFIDGLKESVELASRASVTLA--FEIM---DTPFMNSISKALGYAH-  175 (283)
T ss_pred             HHHHHHHcCCCEEEECCcc--ccccccHHHHHHHHHHHHHHHHHHHHHhCCEEE--Eeec---CCcccCCHHHHHHHHH-
Confidence            2467778999988763211  000000011123446677888999999998765  2211   1122235566555554 


Q ss_pred             HHhCCCCEEEE-ccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCcc
Q 015894          257 LYDMGCSEISL-GDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTY  303 (398)
Q Consensus       257 l~~~Gad~I~L-~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~  303 (398)
                        +.+-+.+.+ -|+.=...-.  .+....++. ..+--.++|.+|..
T Consensus       176 --~v~~~~lgl~~D~~h~~~~~--~~~~~~i~~-~~~~i~~vHikD~~  218 (283)
T PRK13209        176 --YLNSPWFQLYPDIGNLSAWD--NDVQMELQA-GIGHIVAFHVKDTK  218 (283)
T ss_pred             --HhCCCccceEeccchHHHhc--CCHHHHHHh-CcCcEEEEEeccCC
Confidence              445455544 3643221100  012223332 33335899999975

>PLN02591 tryptophan synthase

Probab=90.82  E-value=11  Score=36.54  Aligned_cols=152  Identities=13%  Similarity=0.141  Sum_probs=83.7

Q ss_pred             HHHHHHcCCCEEEEeccCchHHHh-----------hhcCCCHHHHHHHHHHHHHHHHh-CCCcEEEEEeeeecCCCCCCC
Q 015894          178 FEAAVAAGAKEVAIFASASESFSK-----------SNINCTIEDSLIRYRDVALAARE-LSIPVRGYLSCVVGCPVEGMV  245 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~Sd~~~~-----------~~~~~s~~~~l~~~~~~v~~ak~-~G~~v~~~l~~~fg~~~~~r~  245 (398)
                      ++...+.|+|.+-+-++.||....           .+-|.+.++.++.+    +..|+ ...++-  ++ ...++.. .+
T Consensus        22 ~~~l~~~Gad~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~----~~~r~~~~~p~i--lm-~Y~N~i~-~~   93 (250)
T PLN02591         22 LRLLDACGADVIELGVPYSDPLADGPVIQAAATRALEKGTTLDSVISML----KEVAPQLSCPIV--LF-TYYNPIL-KR   93 (250)
T ss_pred             HHHHHHCCCCEEEECCCCCCCcccCHHHHHHHHHHHHcCCCHHHHHHHH----HHHhcCCCCCEE--EE-ecccHHH-Hh
Confidence            445567899999998888886211           11233444444433    44442 233321  22 1211211 11


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeecc
Q 015894          246 PPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSV  325 (398)
Q Consensus       246 ~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv  325 (398)
                         -+.++++.+.++|++.+.++|-    .+++..++.+.++++ ....|-+=.-++ -..-...+++...|.=+. +|.
T Consensus        94 ---G~~~F~~~~~~aGv~GviipDL----P~ee~~~~~~~~~~~-gl~~I~lv~Ptt-~~~ri~~ia~~~~gFIY~-Vs~  163 (250)
T PLN02591         94 ---GIDKFMATIKEAGVHGLVVPDL----PLEETEALRAEAAKN-GIELVLLTTPTT-PTERMKAIAEASEGFVYL-VSS  163 (250)
T ss_pred             ---HHHHHHHHHHHcCCCEEEeCCC----CHHHHHHHHHHHHHc-CCeEEEEeCCCC-CHHHHHHHHHhCCCcEEE-eeC
Confidence               2345677888999999999993    568888888888764 211233322333 333344555555554432 244


Q ss_pred             ccCCCCCCCCCCCC-CccHHHHHHHHHh
Q 015894          326 SGLGGCPYAKGASG-NVATEDVVYMLNG  352 (398)
Q Consensus       326 ~GlGecp~a~graG-Na~lE~vv~~L~~  352 (398)
                      .|..+     .+++ ...+++.+..+++
T Consensus       164 ~GvTG-----~~~~~~~~~~~~i~~vk~  186 (250)
T PLN02591        164 TGVTG-----ARASVSGRVESLLQELKE  186 (250)
T ss_pred             CCCcC-----CCcCCchhHHHHHHHHHh
Confidence            55544     1344 3567887888875

>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional

Probab=90.80  E-value=3.7  Score=41.47  Aligned_cols=75  Identities=16%  Similarity=0.197  Sum_probs=50.5

Q ss_pred             CHHHHHHHHHHHHhCCC--CEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          246 PPSKVAYVSKQLYDMGC--SEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       246 ~~~~l~~~a~~l~~~Ga--d~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      +++++ +-+..+.++|+  |.|.| |++- ..-..+.++++.+++.+|+.+|-.=-   -+ -...+..++++||+.|.+
T Consensus        95 ~~~~~-~~~~~Lv~ag~~~d~i~i-D~a~-gh~~~~~e~I~~ir~~~p~~~vi~g~---V~-t~e~a~~l~~aGad~i~v  167 (326)
T PRK05458         95 KDDEY-DFVDQLAAEGLTPEYITI-DIAH-GHSDSVINMIQHIKKHLPETFVIAGN---VG-TPEAVRELENAGADATKV  167 (326)
T ss_pred             CHHHH-HHHHHHHhcCCCCCEEEE-ECCC-CchHHHHHHHHHHHhhCCCCeEEEEe---cC-CHHHHHHHHHcCcCEEEE
Confidence            34444 44667778854  98877 4333 45578899999999999976554421   11 345667888999999876


Q ss_pred             cccc
Q 015894          324 SVSG  327 (398)
Q Consensus       324 Sv~G  327 (398)
                      +..|
T Consensus       168 g~~~  171 (326)
T PRK05458        168 GIGP  171 (326)
T ss_pred             CCCC
Confidence            5544

>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3

Probab=90.74  E-value=13  Score=37.58  Aligned_cols=136  Identities=18%  Similarity=0.162  Sum_probs=79.7

Q ss_pred             HHHHHcCCCEEEEecc--------CchHH--HhhhcCCCHHHHHHHHHHHHHHHHhC-CCc--EEEEEeeeecCCCCCCC
Q 015894          179 EAAVAAGAKEVAIFAS--------ASESF--SKSNINCTIEDSLIRYRDVALAAREL-SIP--VRGYLSCVVGCPVEGMV  245 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~--------~Sd~~--~~~~~~~s~~~~l~~~~~~v~~ak~~-G~~--v~~~l~~~fg~~~~~r~  245 (398)
                      ++|.++|.|.|.|...        +|+..  .+..+|-+.++-.+.+.++++.+|+. |..  |..-++..-  ...+-.
T Consensus       148 ~ra~~aGfDgVeih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~vg~~~~v~iRl~~~~--~~~~G~  225 (343)
T cd04734         148 RRCQAGGLDGVELQAAHGHLIDQFLSPLTNRRTDEYGGSLENRMRFLLEVLAAVRAAVGPDFIVGIRISGDE--DTEGGL  225 (343)
T ss_pred             HHHHHcCCCEEEEccccchHHHHhhCCCcCCCCCcCCCCHHHHhHHHHHHHHHHHHHcCCCCeEEEEeehhh--ccCCCC
Confidence            4667899999988652        24433  23456778888888888888888875 544  332233110  001124


Q ss_pred             CHHHHHHHHHHHHhCC-CCEEEEccC-----------cCc--CCHHHHHHHHHHHHhhCCCCeEEEEe-CCccchHHHHH
Q 015894          246 PPSKVAYVSKQLYDMG-CSEISLGDT-----------IGV--GTPGTVIPMLEAVLDAVPVDKLAVHF-HDTYGQALSNI  310 (398)
Q Consensus       246 ~~~~l~~~a~~l~~~G-ad~I~L~DT-----------~G~--~~P~~v~~lv~~l~~~~p~~~l~~H~-Hnd~GlA~ANa  310 (398)
                      ++++..++++.+.++| +|.|.+.--           ...  ..+....++++.+++.+. +||..-+ -.|    ..-+
T Consensus       226 ~~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~-ipvi~~G~i~~----~~~~  300 (343)
T cd04734         226 SPDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQAVD-LPVFHAGRIRD----PAEA  300 (343)
T ss_pred             CHHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHHcC-CCEEeeCCCCC----HHHH
Confidence            6788899999999998 899988311           000  011123456677777664 3444433 122    3445


Q ss_pred             HHHHHhC-CCEE
Q 015894          311 LASLQMG-ISTV  321 (398)
Q Consensus       311 laAl~aG-a~~V  321 (398)
                      ..+++.| +|.|
T Consensus       301 ~~~l~~~~~D~V  312 (343)
T cd04734         301 EQALAAGHADMV  312 (343)
T ss_pred             HHHHHcCCCCee
Confidence            5566655 5544

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.

>cd00947 TBP_aldolase_IIB Tagatose-1,6-bisphosphate (TBP) aldolase and related Type B Class II aldolases

Probab=90.72  E-value=3  Score=41.16  Aligned_cols=102  Identities=15%  Similarity=0.225  Sum_probs=73.0

Q ss_pred             HHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEcc-CcCcCCHHHHHHHHHHHHhhCCCC
Q 015894          216 RDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGD-TIGVGTPGTVIPMLEAVLDAVPVD  293 (398)
Q Consensus       216 ~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~D-T~G~~~P~~v~~lv~~l~~~~p~~  293 (398)
                      +++.+.|++.|+-|-+ +.         -++.+.+..+++.+.+.+... |.+.. +...+....+..++..+.+..+ +
T Consensus         2 k~lL~~A~~~~yaV~A-fN---------~~n~e~~~avi~AAe~~~sPvIi~~~~~~~~~~~~~~~~~~~~~~a~~~~-V   70 (276)
T cd00947           2 KELLKKAREGGYAVGA-FN---------INNLETLKAILEAAEETRSPVILQISEGAIKYAGLELLVAMVKAAAERAS-V   70 (276)
T ss_pred             HHHHHHHHHCCceEEE-Ee---------eCCHHHHHHHHHHHHHhCCCEEEEcCcchhhhCCHHHHHHHHHHHHHHCC-C
Confidence            4567889999997742 22         146788889999999998874 44443 2333445668888888877764 4


Q ss_pred             eEEEEeCCccchHHHHHHHHHHhCCC--EEeeccccCCC
Q 015894          294 KLAVHFHDTYGQALSNILASLQMGIS--TVDSSVSGLGG  330 (398)
Q Consensus       294 ~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGe  330 (398)
                      |+.+|.  |.|.-......|+++|.+  ++|+|-..+-+
T Consensus        71 PV~lHL--DH~~~~~~i~~ai~~GftSVMiD~S~l~~ee  107 (276)
T cd00947          71 PVALHL--DHGSSFELIKRAIRAGFSSVMIDGSHLPFEE  107 (276)
T ss_pred             CEEEEC--CCCCCHHHHHHHHHhCCCEEEeCCCCCCHHH
Confidence            666654  666678889999999998  67988876655

TBP aldolase is a tetrameric class II aldolase that catalyzes the reversible condensation of dihydroxyacetone phosphate with glyceraldehyde 3-phsophate to produce tagatose 1,6-bisphosphate. There is an absolute requirement for a divalent metal ion, usually zinc, and in addition the enzymes are activated by monovalent cations such as Na+. The type A and type B Class II FBPA's differ in the presence and absence of distinct indels in the sequence that result in differing loop lengths in the structures.

>TIGR02317 prpB methylisocitrate lyase

Probab=90.71  E-value=4.4  Score=40.14  Aligned_cols=134  Identities=14%  Similarity=0.201  Sum_probs=83.6

Q ss_pred             HHHHHHcCCCEEEEec-cCchHHHhhhc-CCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 015894          178 FEAAVAAGAKEVAIFA-SASESFSKSNI-NCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSK  255 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~-~~Sd~~~~~~~-~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~  255 (398)
                      .+.+.++|.+-+.+.- .+|-.+-..-. -.+.++.++.++++.+.   -.++|.+.+-       .+--++..+...++
T Consensus        26 Ari~e~aGf~Ai~~sg~~~a~~lG~pD~g~lt~~e~~~~~~~I~~~---~~iPviaD~d-------~GyG~~~~v~~tv~   95 (285)
T TIGR02317        26 ALLAERAGFEAIYLSGAAVAASLGLPDLGITTLDEVAEDARRITRV---TDLPLLVDAD-------TGFGEAFNVARTVR   95 (285)
T ss_pred             HHHHHHcCCCEEEEcHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc---cCCCEEEECC-------CCCCCHHHHHHHHH
Confidence            3455667887776631 11111000000 13677777776655543   4677764443       22234788888999


Q ss_pred             HHHhCCCCEEEEccCcC-----------cCCHHHHHHHHHHHHhhCCCCeEEEEe------CCccchHHHHHHHHHHhCC
Q 015894          256 QLYDMGCSEISLGDTIG-----------VGTPGTVIPMLEAVLDAVPVDKLAVHF------HDTYGQALSNILASLQMGI  318 (398)
Q Consensus       256 ~l~~~Gad~I~L~DT~G-----------~~~P~~v~~lv~~l~~~~p~~~l~~H~------Hnd~GlA~ANalaAl~aGa  318 (398)
                      ++.++|+..|.|-|.++           +..+++....|++.++...+..+-+=.      ...+--|+.-+.+..++||
T Consensus        96 ~~~~aG~agi~IEDq~~pK~cgh~~g~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~ay~~AGA  175 (285)
T TIGR02317        96 EMEDAGAAAVHIEDQVLPKRCGHLPGKELVSREEMVDKIAAAVDAKRDEDFVIIARTDARAVEGLDAAIERAKAYVEAGA  175 (285)
T ss_pred             HHHHcCCeEEEEecCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCEEEEEEcCcccccCHHHHHHHHHHHHHcCC
Confidence            99999999999999873           345677777788877654322232222      2335578888899999999


Q ss_pred             CEE
Q 015894          319 STV  321 (398)
Q Consensus       319 ~~V  321 (398)
                      |.|
T Consensus       176 D~v  178 (285)
T TIGR02317       176 DMI  178 (285)
T ss_pred             CEE
Confidence            965

Members of this family are methylisocitrate lyase, also called (2S,3R)-3-hydroxybutane-1,2,3-tricarboxylate pyruvate-lyase. This enzyme acts in propionate metabolism. It cleaves a carbon-carbon bond to convert 2-methylisocitrate to pyruvate plus succinate. Some members of this family have been annotated, incorrectly it seems, as the related protein carboxyphosphoenolpyruvate phosphomutase, which is involved in synthesizing the antibiotic bialaphos in Streptomyces hygroscopicus.

>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA)

Probab=90.69  E-value=7.3  Score=38.78  Aligned_cols=80  Identities=11%  Similarity=0.064  Sum_probs=44.7

Q ss_pred             HHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC--CCCE-E-EEccCcCcCCHHHHHHHHHHHHhh
Q 015894          214 RYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM--GCSE-I-SLGDTIGVGTPGTVIPMLEAVLDA  289 (398)
Q Consensus       214 ~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~--Gad~-I-~L~DT~G~~~P~~v~~lv~~l~~~  289 (398)
                      ...+.++.|++.|.....     ...|.-.+.+.+.+.+..+.+.+.  +... | .++...|.-.|.+   ++..|. .
T Consensus        91 ~ai~~a~~A~~~Gad~vl-----v~~P~y~~~~~~~l~~yf~~va~a~~~lPv~iYn~P~~tg~~l~~~---~l~~L~-~  161 (309)
T cd00952          91 DTIARTRALLDLGADGTM-----LGRPMWLPLDVDTAVQFYRDVAEAVPEMAIAIYANPEAFKFDFPRA---AWAELA-Q  161 (309)
T ss_pred             HHHHHHHHHHHhCCCEEE-----ECCCcCCCCCHHHHHHHHHHHHHhCCCCcEEEEcCchhcCCCCCHH---HHHHHh-c
Confidence            344566788888887431     113544455677788877777654  2443 3 3677777555433   333443 3


Q ss_pred             CCCCeEEE-EeCCccc
Q 015894          290 VPVDKLAV-HFHDTYG  304 (398)
Q Consensus       290 ~p~~~l~~-H~Hnd~G  304 (398)
                      .|++ +++ ..+ |..
T Consensus       162 ~pni-vgiKdss-d~~  175 (309)
T cd00952         162 IPQV-VAAKYLG-DIG  175 (309)
T ss_pred             CCCE-EEEEecC-ChH
Confidence            5764 555 344 443

HBPHA catalyzes HBP to salicyaldehyde and pyruvate. This reaction is part of the degradative pathways for naphthalene and naphthalenesulfonates by bacteria. CBPHA is homologous to HBPHA and catalyzes the cleavage of CBP to 2-carboxylbenzaldehyde and pyruvate during the degradation of phenanthrene. They are member of the DHDPS family of Schiff-base-dependent class I aldolases.

>PRK03170 dihydrodipicolinate synthase; Provisional

Probab=90.68  E-value=2.2  Score=41.91  Aligned_cols=83  Identities=16%  Similarity=0.093  Sum_probs=69.3

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcC---cCCHHHHHHHHHHHHhhCC-CCeEEEEe-CCccchHHHHHHHHHHhC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIG---VGTPGTVIPMLEAVLDAVP-VDKLAVHF-HDTYGQALSNILASLQMG  317 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~lv~~l~~~~p-~~~l~~H~-Hnd~GlA~ANalaAl~aG  317 (398)
                      +..|.+-+.+.++.+.+.|++.|.++-|+|   .+++++-.++++.+++..+ ..+|-+|. +++..-++..+..|-++|
T Consensus        17 g~iD~~~l~~~i~~l~~~Gv~gi~~~Gs~GE~~~ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~~G   96 (292)
T PRK03170         17 GSVDFAALRKLVDYLIANGTDGLVVVGTTGESPTLTHEEHEELIRAVVEAVNGRVPVIAGTGSNSTAEAIELTKFAEKAG   96 (292)
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECCcCCccccCCHHHHHHHHHHHHHHhCCCCcEEeecCCchHHHHHHHHHHHHHcC
Confidence            568899999999999999999999999999   5677888888888887765 35666665 678899999999999999


Q ss_pred             CCEEeecc
Q 015894          318 ISTVDSSV  325 (398)
Q Consensus       318 a~~VD~Sv  325 (398)
                      ++.|=..-
T Consensus        97 ~d~v~~~p  104 (292)
T PRK03170         97 ADGALVVT  104 (292)
T ss_pred             CCEEEECC
Confidence            99776643

>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm)

Probab=90.65  E-value=9.9  Score=33.23  Aligned_cols=107  Identities=19%  Similarity=0.263  Sum_probs=66.6

Q ss_pred             HHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCCHhhHHHHHHcCCCEEEEeccCchHHHh
Q 015894          122 VELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSK  201 (398)
Q Consensus       122 ~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~  201 (398)
                      --++..|.+.|++.|..|..+++         +++                     ++.|.+.+++.|.+..-..     
T Consensus        17 niv~~~L~~~GfeVidLG~~v~~---------e~~---------------------v~aa~~~~adiVglS~L~t-----   61 (128)
T cd02072          17 KILDHAFTEAGFNVVNLGVLSPQ---------EEF---------------------IDAAIETDADAILVSSLYG-----   61 (128)
T ss_pred             HHHHHHHHHCCCEEEECCCCCCH---------HHH---------------------HHHHHHcCCCEEEEecccc-----
Confidence            34667788999999999986653         333                     3566777888888753221     


Q ss_pred             hhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHH
Q 015894          202 SNINCTIEDSLIRYRDVALAARELSI-PVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVI  280 (398)
Q Consensus       202 ~~~~~s~~~~l~~~~~~v~~ak~~G~-~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~  280 (398)
                              ..+..++++++..++.|+ .+-  +.  .|..-  ..+++...+..+++.++|++.++=++|    .|.++.
T Consensus        62 --------~~~~~~~~~~~~l~~~gl~~v~--vi--vGG~~--~i~~~d~~~~~~~L~~~Gv~~vf~pgt----~~~~i~  123 (128)
T cd02072          62 --------HGEIDCKGLREKCDEAGLKDIL--LY--VGGNL--VVGKQDFEDVEKRFKEMGFDRVFAPGT----PPEEAI  123 (128)
T ss_pred             --------CCHHHHHHHHHHHHHCCCCCCe--EE--EECCC--CCChhhhHHHHHHHHHcCCCEEECcCC----CHHHHH
Confidence                    123556677778888887 322  21  22210  124455556667788899998887776    555544


Q ss_pred             H
Q 015894          281 P  281 (398)
Q Consensus       281 ~  281 (398)
                      +
T Consensus       124 ~  124 (128)
T cd02072         124 A  124 (128)
T ss_pred             H
Confidence            3

Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.

>cd06556 ICL_KPHMT Members of the ICL/PEPM_KPHMT enzyme superfamily catalyze the formation and cleavage of either P-C or C-C bonds

Probab=90.59  E-value=17  Score=35.07  Aligned_cols=140  Identities=18%  Similarity=0.152  Sum_probs=82.4

Q ss_pred             CcEEEEe-CCHhhHHHHHHcCCCEEEEeccCchHHHhhhc----CCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCC
Q 015894          166 ARFPVLT-PNLKGFEAAVAAGAKEVAIFASASESFSKSNI----NCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCP  240 (398)
Q Consensus       166 ~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~----~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~  240 (398)
                      -.+.+++ .+.-..+.+.++|++.|.+..+..-.  ...+    ..+.++.+..++.+.+.++  ...|.+.      .|
T Consensus        12 ~~i~~~~ayD~~sA~i~e~aG~dai~v~~s~~a~--~~G~pD~~~vtl~em~~~~~~I~r~~~--~~pviaD------~~   81 (240)
T cd06556          12 ERFATLTAYDYSMAKQFADAGLNVMLVGDSQGMT--VAGYDDTLPYPVNDVPYHVRAVRRGAP--LALIVAD------LP   81 (240)
T ss_pred             CeEEEecCCCHHHHHHHHHcCCCEEEEChHHHHH--hcCCCCCCCcCHHHHHHHHHHHHhhCC--CCCEEEe------CC
Confidence            3444443 24444566677899988875432211  1111    2466777776655555432  1344432      33


Q ss_pred             CCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCC------ccc----------
Q 015894          241 VEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHD------TYG----------  304 (398)
Q Consensus       241 ~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hn------d~G----------  304 (398)
                      ..+--+++.+.+.++++.++|++.|.|-|..      ++.+.++++++.-  ++|-.|+=-      +.|          
T Consensus        82 ~G~g~~~~~~~~~~~~l~~aGa~gv~iED~~------~~~~~i~ai~~a~--i~ViaRtd~~pq~~~~~gg~~~~~~~~~  153 (240)
T cd06556          82 FGAYGAPTAAFELAKTFMRAGAAGVKIEGGE------WHIETLQMLTAAA--VPVIAHTGLTPQSVNTSGGDEGQYRGDE  153 (240)
T ss_pred             CCCCcCHHHHHHHHHHHHHcCCcEEEEcCcH------HHHHHHHHHHHcC--CeEEEEeCCchhhhhccCCceeeccCHH
Confidence            3332366888899999999999999999963      4556677777643  344444322      111          


Q ss_pred             ---hHHHHHHHHHHhCCCEEee
Q 015894          305 ---QALSNILASLQMGISTVDS  323 (398)
Q Consensus       305 ---lA~ANalaAl~aGa~~VD~  323 (398)
                         -++.-+.+-.+|||+.|=.
T Consensus       154 ~~~~ai~Ra~ay~~AGAd~i~~  175 (240)
T cd06556         154 AGEQLIADALAYAPAGADLIVM  175 (240)
T ss_pred             HHHHHHHHHHHHHHcCCCEEEE
Confidence               4466667777888886543

Typical members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), 2-methylisocitrate lyase (MICL), and ketopantoate hydroxymethyltransferase (KPHMT).

>cd00408 DHDPS-like Dihydrodipicolinate synthase family

Probab=90.59  E-value=6.4  Score=38.14  Aligned_cols=57  Identities=16%  Similarity=0.007  Sum_probs=29.7

Q ss_pred             HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC-CCCE--EEEccCcCcCCH
Q 015894          215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM-GCSE--ISLGDTIGVGTP  276 (398)
Q Consensus       215 ~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~-Gad~--I~L~DT~G~~~P  276 (398)
                      ..+.++.|++.|.....     ...|.....+.+.+.+..+.+.+. +...  -.++...|...+
T Consensus        81 ~i~~a~~a~~~Gad~v~-----v~pP~y~~~~~~~~~~~~~~ia~~~~~pi~iYn~P~~tg~~l~  140 (281)
T cd00408          81 AIELARHAEEAGADGVL-----VVPPYYNKPSQEGIVAHFKAVADASDLPVILYNIPGRTGVDLS  140 (281)
T ss_pred             HHHHHHHHHHcCCCEEE-----ECCCcCCCCCHHHHHHHHHHHHhcCCCCEEEEECccccCCCCC
Confidence            34555677777776431     113444445666666666666553 3332  234555565544

A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=90.55  E-value=7.7  Score=39.00  Aligned_cols=130  Identities=18%  Similarity=0.207  Sum_probs=71.8

Q ss_pred             HHHHHHHHHHHhcCCCEEEEecCC-CCCcccCCCCHHHHHHHHHh-ccCCcEEE-EeCCHhhHHHHHHcCCCEEEEeccC
Q 015894          119 VVKVELIKLLVSSGLAVVEATSFV-SPKWVPQLADAKDVMAAIQN-VEGARFPV-LTPNLKGFEAAVAAGAKEVAIFASA  195 (398)
Q Consensus       119 ~~k~~ia~~L~~aGv~~IEvG~~~-~~~~~p~~~D~~~v~~~i~~-~~~~~l~~-l~~n~~~ie~a~~~Gv~~v~i~~~~  195 (398)
                      .+..+.++.|.++|++.|++.+.. .+      ....+.++.+++ .|++.+.+ -+.+.++.+.+.++|+|.|.+-..-
T Consensus        93 ~~~~~~~~~l~eagv~~I~vd~~~G~~------~~~~~~i~~ik~~~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~vg~g~  166 (325)
T cd00381          93 EDDKERAEALVEAGVDVIVIDSAHGHS------VYVIEMIKFIKKKYPNVDVIAGNVVTAEAARDLIDAGADGVKVGIGP  166 (325)
T ss_pred             hhHHHHHHHHHhcCCCEEEEECCCCCc------HHHHHHHHHHHHHCCCceEEECCCCCHHHHHHHHhcCCCEEEECCCC
Confidence            344678888999999999986422 11      112344555553 34333332 2346788889999999998873221


Q ss_pred             chHHHhh-hcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 015894          196 SESFSKS-NINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG  268 (398)
Q Consensus       196 Sd~~~~~-~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~  268 (398)
                      -..+... ..+..+. .+..+.++.+.+++.+++|-+         +.+-.++..+.+   .+ ++||+.+.+.
T Consensus       167 G~~~~t~~~~g~g~p-~~~~i~~v~~~~~~~~vpVIA---------~GGI~~~~di~k---Al-a~GA~~VmiG  226 (325)
T cd00381         167 GSICTTRIVTGVGVP-QATAVADVAAAARDYGVPVIA---------DGGIRTSGDIVK---AL-AAGADAVMLG  226 (325)
T ss_pred             CcCcccceeCCCCCC-HHHHHHHHHHHHhhcCCcEEe---------cCCCCCHHHHHH---HH-HcCCCEEEec
Confidence            0001000 1111111 334555666777777777641         334445554333   33 4999988664

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional

Probab=90.43  E-value=16  Score=37.54  Aligned_cols=143  Identities=14%  Similarity=0.131  Sum_probs=89.3

Q ss_pred             HHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC---CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHH
Q 015894          182 VAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAREL---SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLY  258 (398)
Q Consensus       182 ~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~---G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~  258 (398)
                      ...|.|.+..++...+.      ..+.+++-+.+....+++++.   -..-... ...|| +.-+-..++.-.+-++.+.
T Consensus       134 ~~ig~DI~~~LD~~~~~------~~~~~~~~~sv~rT~rw~~~~~~~~~~~~~~-~~lfg-iVQGg~~~dLR~~sa~~l~  205 (366)
T PRK00112        134 YDLGSDIVMAFDECPPY------PATYDYAKKSMERTLRWAERSRDAHDRLEND-QALFG-IVQGGVYEDLRRESAKGLV  205 (366)
T ss_pred             HHhCCCEEEECCcCCCC------CCCHHHHHHHHHHHHHHHHHHHHHhhcCCCc-ceEEE-EeeCCccHHHHHHHHHHHH
Confidence            35788887776544332      234445555554444444322   0000000 00121 3344456676677888899


Q ss_pred             hCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCC-CCeEEEEeCCccchH-HHHHHHHHHhCCCEEeeccccCCCCCCCCC
Q 015894          259 DMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQA-LSNILASLQMGISTVDSSVSGLGGCPYAKG  336 (398)
Q Consensus       259 ~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA-~ANalaAl~aGa~~VD~Sv~GlGecp~a~g  336 (398)
                      +.+.+.+.|.--...-...++.++|..++..+| +.|..+     +|.+ ..+.+.++..|+|.+|++.--.=.      
T Consensus       206 ~~~~~G~aIGGl~~ge~~~~~~~~v~~~~~~lp~~kPryl-----~Gvg~P~~i~~~v~~GvD~FD~~~p~r~A------  274 (366)
T PRK00112        206 EIDFDGYAIGGLSVGEPKEEMYRILEHTAPLLPEDKPRYL-----MGVGTPEDLVEGVARGVDMFDCVMPTRNA------  274 (366)
T ss_pred             hCCCceeEeccccCCCCHHHHHHHHHHHHhhCCCcCCeEe-----cCCCCHHHHHHHHHcCCCEEeeCCccccc------
Confidence            999999999986544678889999999999887 445443     4444 378999999999999988754333      


Q ss_pred             CCCCccH
Q 015894          337 ASGNVAT  343 (398)
Q Consensus       337 raGNa~l  343 (398)
                      |.|.+=+
T Consensus       275 r~G~alt  281 (366)
T PRK00112        275 RNGTLFT  281 (366)
T ss_pred             cCCceeC
Confidence            5565543

>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2

Probab=90.41  E-value=6.6  Score=37.45  Aligned_cols=82  Identities=18%  Similarity=0.226  Sum_probs=56.8

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                      +-.+.+.-.+.++.+.+.+.+.+.|.-........+..++++.+.+.+| +.+..++   ..| ...+.+.++..|+|.+
T Consensus        63 Gg~~~~lR~~s~~~l~~~~~~g~~igGl~~~~~~~~~~~~l~~i~~~lp~~~pr~l~---G~~-~P~~i~~~v~~GvD~f  138 (238)
T PF01702_consen   63 GGDDKDLRRRSAEELSEDGFDGYAIGGLSPGEEKEERLEILEAIINNLPPDKPRYLL---GVG-TPEEILEAVYLGVDLF  138 (238)
T ss_dssp             -TT-HHHHHHHHHHHHHSS-SEEEE-SSSSSSHHHHHHHHHHHHHHCS-TTS-EEET---TB--SHHHHHHHHHTT--EE
T ss_pred             CCCCHHHHHHHHHHHHhcccccccccCCcCCCCHHHHHHHHHHHHhhCCcccceecc---CCC-CHHHHHHHHHcCCcEE
Confidence            3345666677788888877999999887766678999999999999887 5555442   222 5788999999999999


Q ss_pred             eeccccC
Q 015894          322 DSSVSGL  328 (398)
Q Consensus       322 D~Sv~Gl  328 (398)
                      |++.--.
T Consensus       139 Ds~~p~~  145 (238)
T PF01702_consen  139 DSSYPTR  145 (238)
T ss_dssp             EESHHHH
T ss_pred             cchHHHH
Confidence            9987543

4.2.29 from EC, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine at position 34 and with archaeosine at position 15 in archaeal tRNAs. In bacterial it catalyses the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position [, ]. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues [].; GO: 0008479 queuine tRNA-ribosyltransferase activity, 0006400 tRNA modification, 0008616 queuosine biosynthetic process; PDB: 2ASH_A 1J2B_A 1IT8_A 1IT7_B 1IQ8_A 1R5Y_A 1P0B_A 3BL3_A 3EOS_A 1EFZ_A ....

>PRK09195 gatY tagatose-bisphosphate aldolase; Reviewed

Probab=90.41  E-value=3.2  Score=41.10  Aligned_cols=118  Identities=13%  Similarity=0.146  Sum_probs=84.3

Q ss_pred             HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEccC-cCcCCHHHHHHHHHHHHhhCCC
Q 015894          215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGDT-IGVGTPGTVIPMLEAVLDAVPV  292 (398)
Q Consensus       215 ~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~DT-~G~~~P~~v~~lv~~l~~~~p~  292 (398)
                      ++++.+.|++.++-|- .+..         ++.+.+..+++.+.+.+... |.+... ...+....+..++..+.++.. 
T Consensus         6 ~k~il~~A~~~~yaV~-AfN~---------~n~e~~~avi~AAee~~sPvIiq~~~~~~~~~g~~~~~~~~~~~A~~~~-   74 (284)
T PRK09195          6 TKQMLNNAQRGGYAVP-AFNI---------HNLETMQVVVETAAELHSPVIIAGTPGTFSYAGTEYLLAIVSAAAKQYH-   74 (284)
T ss_pred             HHHHHHHHHHcCceEE-EEEe---------CCHHHHHHHHHHHHHhCCCEEEEcChhHHhhCCHHHHHHHHHHHHHHCC-
Confidence            5677888999998773 3331         46789999999999999774 455442 233444567788888887764 


Q ss_pred             CeEEEEeCCccchHHHHHHHHHHhCCC--EEeeccccCCCCCCCCCCCCCc-cHHHHHHHHHhCC
Q 015894          293 DKLAVHFHDTYGQALSNILASLQMGIS--TVDSSVSGLGGCPYAKGASGNV-ATEDVVYMLNGLG  354 (398)
Q Consensus       293 ~~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGecp~a~graGNa-~lE~vv~~L~~~G  354 (398)
                      +|+.+|  =|.|.-+..+..|+++|.+  ++|+|-..+-+         |. -|-+++.+.+..|
T Consensus        75 VPV~lH--LDHg~~~e~i~~Ai~~GftSVM~DgS~l~~ee---------Ni~~T~~vv~~Ah~~g  128 (284)
T PRK09195         75 HPLALH--LDHHEKFDDIAQKVRSGVRSVMIDGSHLPFAQ---------NISLVKEVVDFCHRFD  128 (284)
T ss_pred             CCEEEE--CCCCCCHHHHHHHHHcCCCEEEeCCCCCCHHH---------HHHHHHHHHHHHHHcC
Confidence            466655  4777778999999999998  66999887766         55 5566666666443

>TIGR00167 cbbA ketose-bisphosphate aldolases

Probab=90.39  E-value=4.4  Score=40.16  Aligned_cols=121  Identities=18%  Similarity=0.229  Sum_probs=84.5

Q ss_pred             HHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEccC-cCc-CCHHHHHHHHHHHHhhC
Q 015894          214 RYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGDT-IGV-GTPGTVIPMLEAVLDAV  290 (398)
Q Consensus       214 ~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~DT-~G~-~~P~~v~~lv~~l~~~~  290 (398)
                      .++++.+.|++.|+-|- .+.+         ++.+.+..+++.+.+.+... |.+... ... ..+..+..++..+.++.
T Consensus         5 ~~k~iL~~A~~~~yAV~-AfN~---------~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~~g~~~~~~~~~~~a~~~   74 (288)
T TIGR00167         5 DVKELLQDAKEEGYAIP-AFNI---------NNLETINAVLEAAAEEKSPVIIQFSNGAAKYIAGLGAISAMVKAMSEAY   74 (288)
T ss_pred             cHHHHHHHHHHCCceEE-EEEE---------CCHHHHHHHHHHHHHHCCCEEEECCcchhhccCCHHHHHHHHHHHHHhc
Confidence            45677889999999775 2331         36788999999999999875 444332 222 33667777887777766


Q ss_pred             C-CCeEEEEeCCccchHHHHHHHHHHhCCC--EEeeccccCCCCCCCCCCCCCc-cHHHHHHHHHhCCC
Q 015894          291 P-VDKLAVHFHDTYGQALSNILASLQMGIS--TVDSSVSGLGGCPYAKGASGNV-ATEDVVYMLNGLGV  355 (398)
Q Consensus       291 p-~~~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGecp~a~graGNa-~lE~vv~~L~~~Gi  355 (398)
                      + .+|+.+|  =|.|.-...+..|+++|.+  ++|+|-..+-+         |. -|-+++...+..|+
T Consensus        75 ~~~VPV~lH--LDHg~~~e~i~~ai~~GftSVMiDgS~lp~ee---------Ni~~T~~vv~~Ah~~gv  132 (288)
T TIGR00167        75 PYGVPVALH--LDHGASEEDCAQAVKAGFSSVMIDGSHEPFEE---------NIELTKKVVERAHKMGV  132 (288)
T ss_pred             cCCCcEEEE--CCCCCCHHHHHHHHHcCCCEEEecCCCCCHHH---------HHHHHHHHHHHHHHcCC
Confidence            2 3566655  4777788999999999998  67999887766         54 45566666654433

fructose-bisphosphate and tagatose-bisphosphate aldolase.

>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase

Probab=90.39  E-value=2.4  Score=44.52  Aligned_cols=72  Identities=13%  Similarity=0.107  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccc
Q 015894          249 KVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVS  326 (398)
Q Consensus       249 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~  326 (398)
                      +..+-++.+.++|++.|.+--+-|  .-..+.+.++.+++.+|+.+|.+    -...-...+..++++||+.|.+++.
T Consensus       224 ~~~~r~~~L~~aG~d~I~vd~a~g--~~~~~~~~i~~i~~~~~~~~vi~----G~v~t~~~a~~l~~aGad~i~vg~g  295 (450)
T TIGR01302       224 FDKERAEALVKAGVDVIVIDSSHG--HSIYVIDSIKEIKKTYPDLDIIA----GNVATAEQAKALIDAGADGLRVGIG  295 (450)
T ss_pred             hHHHHHHHHHHhCCCEEEEECCCC--cHhHHHHHHHHHHHhCCCCCEEE----EeCCCHHHHHHHHHhCCCEEEECCC
Confidence            344556788899999988733333  33578899999999999878777    3344567788899999999999763

This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.

>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional

Probab=90.35  E-value=4.3  Score=38.44  Aligned_cols=70  Identities=13%  Similarity=0.163  Sum_probs=57.9

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          245 VPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       245 ~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      .+++...++++.+.+.|++.|-+.    .-+| ...+.|+.+++.+|+..|+..+=-|.    ..+-.|+++||+++=+
T Consensus        24 ~~~~~a~~i~~al~~~Gi~~iEit----l~~~-~~~~~I~~l~~~~p~~~IGAGTVl~~----~~a~~a~~aGA~Fivs   93 (212)
T PRK05718         24 NKLEDAVPLAKALVAGGLPVLEVT----LRTP-AALEAIRLIAKEVPEALIGAGTVLNP----EQLAQAIEAGAQFIVS   93 (212)
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEe----cCCc-cHHHHHHHHHHHCCCCEEEEeeccCH----HHHHHHHHcCCCEEEC
Confidence            478999999999999999998887    4456 56677899999999888888777666    6678899999997643

>COG0535 Predicted Fe-S oxidoreductases [General function prediction only]

Probab=90.31  E-value=19  Score=35.21  Aligned_cols=139  Identities=17%  Similarity=0.186  Sum_probs=89.0

Q ss_pred             CCCCHHHHHHHHHHHHhcC-CCEEEEecCCCCCcccCC-CCHHHHHHHHHhccCCcEEEEeCC-----HhhHHHHHHcCC
Q 015894          114 NIVPAVVKVELIKLLVSSG-LAVVEATSFVSPKWVPQL-ADAKDVMAAIQNVEGARFPVLTPN-----LKGFEAAVAAGA  186 (398)
Q Consensus       114 ~~~~~~~k~~ia~~L~~aG-v~~IEvG~~~~~~~~p~~-~D~~~v~~~i~~~~~~~l~~l~~n-----~~~ie~a~~~Gv  186 (398)
                      ..+++++..++...+.+.| +..+-++.. .    |-+ .|..++.+.+++..+.++. +..|     ..-++...++|+
T Consensus        46 ~el~~~~~~~~~~~~~~~g~~~~v~~~gG-E----Pll~~d~~ei~~~~~~~~~~~~~-~~TnG~~~~~~~~~~l~~~g~  119 (347)
T COG0535          46 GELSTEEDLRVIDELAELGEIPVVIFTGG-E----PLLRPDLLEIVEYARKKGGIRVS-LSTNGTLLTEEVLEKLKEAGL  119 (347)
T ss_pred             cccCHHHHHHHHHHHHHcCCeeEEEEeCC-C----ccccccHHHHHHHHhhcCCeEEE-EeCCCccCCHHHHHHHHhcCC
Confidence            3567788788999999999 666655432 1    112 3556666666644444433 3333     256677788999


Q ss_pred             CEEEEeccCchHHH-hhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE
Q 015894          187 KEVAIFASASESFS-KSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEI  265 (398)
Q Consensus       187 ~~v~i~~~~Sd~~~-~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I  265 (398)
                      +.|.|.+...+.-. ....  ..+-++++..+.++.+++.|+.+..+...       .+.+.+.+.++++.+.+.|++.+
T Consensus       120 ~~v~iSid~~~~e~hd~~r--g~~g~~~~~~~~i~~~~~~g~~~~~~~~v-------~~~n~~~l~~~~~~~~~~g~~~~  190 (347)
T COG0535         120 DYVSISLDGLDPETHDPIR--GVKGVFKRAVEAIKNLKEAGILVVINTTV-------TKINYDELPEIADLAAELGVDEL  190 (347)
T ss_pred             cEEEEEecCCChhhhhhhc--CCCcHHHHHHHHHHHHHHcCCeeeEEEEE-------ecCcHHHHHHHHHHHHHcCCCEE
Confidence            99998766544221 1111  22346677788889999999975433332       24567888899999999998765


Q ss_pred             EE
Q 015894          266 SL  267 (398)
Q Consensus       266 ~L  267 (398)
                      .+
T Consensus       191 ~~  192 (347)
T COG0535         191 NV  192 (347)
T ss_pred             EE
Confidence            44

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=90.30  E-value=17  Score=35.91  Aligned_cols=77  Identities=16%  Similarity=0.095  Sum_probs=55.2

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEE---c-cC---cC-----cCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHH
Q 015894          245 VPPSKVAYVSKQLYDMGCSEISL---G-DT---IG-----VGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILA  312 (398)
Q Consensus       245 ~~~~~l~~~a~~l~~~Gad~I~L---~-DT---~G-----~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANala  312 (398)
                      .+++.+.++++.+.+.|+|.|.|   | .+   -|     .-.|+.+.++++.+++... +||.+-..-+..--..-+.+
T Consensus       110 ~~~~~~~~~a~~~~~~gad~ielN~sCP~~~~~~~~G~~l~~~~~~~~~iv~~v~~~~~-~Pv~vKl~~~~~~~~~~a~~  188 (299)
T cd02940         110 YNKEDWTELAKLVEEAGADALELNFSCPHGMPERGMGAAVGQDPELVEEICRWVREAVK-IPVIAKLTPNITDIREIARA  188 (299)
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCCchhhccCHHHHHHHHHHHHHhcC-CCeEEECCCCchhHHHHHHH
Confidence            47899999999998899998766   2 22   12     1469999999999998764 46777766554433344455


Q ss_pred             HHHhCCCEEe
Q 015894          313 SLQMGISTVD  322 (398)
Q Consensus       313 Al~aGa~~VD  322 (398)
                      +.++||+.|-
T Consensus       189 ~~~~Gadgi~  198 (299)
T cd02940         189 AKEGGADGVS  198 (299)
T ss_pred             HHHcCCCEEE
Confidence            6789999664

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases

Probab=90.26  E-value=4.3  Score=39.91  Aligned_cols=82  Identities=12%  Similarity=0.077  Sum_probs=65.5

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcC---CHHHHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHHHHHhC
Q 015894          242 EGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVG---TPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILASLQMG  317 (398)
Q Consensus       242 ~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~---~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANalaAl~aG  317 (398)
                      .++.|.+.+.++++.+.+.|++.|.+.-|+|-+   +.++-.++++.+.+... .++|-+|.-.+..-++..+..|-++|
T Consensus        15 dg~iD~~~l~~l~~~l~~~Gv~gi~v~GstGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~t~~~i~~a~~a~~~G   94 (289)
T cd00951          15 DGSFDEDAYRAHVEWLLSYGAAALFAAGGTGEFFSLTPDEYAQVVRAAVEETAGRVPVLAGAGYGTATAIAYAQAAEKAG   94 (289)
T ss_pred             CCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCCEEEecCCCHHHHHHHHHHHHHhC
Confidence            357899999999999999999999999999855   45666667777666653 45666666557778888999999999


Q ss_pred             CCEEee
Q 015894          318 ISTVDS  323 (398)
Q Consensus       318 a~~VD~  323 (398)
                      |+.+=.
T Consensus        95 ad~v~~  100 (289)
T cd00951          95 ADGILL  100 (289)
T ss_pred             CCEEEE
Confidence            998744

The enzyme is involved in glucarate metabolism, and its mechanism presumbly involves a Schiff-base intermediate similar to members of DHDPS family. While in the case of Pseudomonas sp. 5-dehydro-4-deoxy-D-glucarate is degraded by KDGDH to 2,5-dioxopentanoate, in certain species of Enterobacteriaceae it is degraded instead to pyruvate and glycerate.

>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure

Probab=90.20  E-value=12  Score=32.83  Aligned_cols=172  Identities=20%  Similarity=0.146  Sum_probs=92.1

Q ss_pred             HHHHHHHHHHHhcCCCEEEEecCCC-CCcccCCCCHHHHHHHHHhccCCcEEEE--eCCH-hhH----HHHHHcCCCEEE
Q 015894          119 VVKVELIKLLVSSGLAVVEATSFVS-PKWVPQLADAKDVMAAIQNVEGARFPVL--TPNL-KGF----EAAVAAGAKEVA  190 (398)
Q Consensus       119 ~~k~~ia~~L~~aGv~~IEvG~~~~-~~~~p~~~D~~~v~~~i~~~~~~~l~~l--~~n~-~~i----e~a~~~Gv~~v~  190 (398)
                      +.-.++++.+.+.|++.++++.... +....  ....+.+..+....+..+.+-  ..+. ..+    +.+.+.|++.|.
T Consensus        12 ~~~~~~~~~~~~~G~~~v~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~d~v~   89 (200)
T cd04722          12 GDPVELAKAAAEAGADAIIVGTRSSDPEEAE--TDDKEVLKEVAAETDLPLGVQLAINDAAAAVDIAAAAARAAGADGVE   89 (200)
T ss_pred             HHHHHHHHHHHcCCCCEEEEeeEEECcccCC--CccccHHHHHHhhcCCcEEEEEccCCchhhhhHHHHHHHHcCCCEEE
Confidence            5667899999999999999987542 21111  111122333333334443332  2222 222    478889999998


Q ss_pred             EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 015894          191 IFASASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG  268 (398)
Q Consensus       191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~  268 (398)
                      +-...-..             .+...+.++.+++.  ++.+...+..     ..   +.+.    + .+.++|++.|.+.
T Consensus        90 l~~~~~~~-------------~~~~~~~~~~i~~~~~~~~v~~~~~~-----~~---~~~~----~-~~~~~g~d~i~~~  143 (200)
T cd04722          90 IHGAVGYL-------------AREDLELIRELREAVPDVKVVVKLSP-----TG---ELAA----A-AAEEAGVDEVGLG  143 (200)
T ss_pred             EeccCCcH-------------HHHHHHHHHHHHHhcCCceEEEEECC-----CC---ccch----h-hHHHcCCCEEEEc
Confidence            86543110             12234455555554  6665533321     11   1111    0 1678899999887


Q ss_pred             cCcCcCC----HHHHHHHHHHHHhhCCCCeEEEEeCCccchHH-HHHHHHHHhCCCEEee
Q 015894          269 DTIGVGT----PGTVIPMLEAVLDAVPVDKLAVHFHDTYGQAL-SNILASLQMGISTVDS  323 (398)
Q Consensus       269 DT~G~~~----P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~-ANalaAl~aGa~~VD~  323 (398)
                      ...+...    +......+..+++. +..++..    +-|... .++..++++||+.|.+
T Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~pi~~----~GGi~~~~~~~~~~~~Gad~v~v  198 (200)
T cd04722         144 NGGGGGGGRDAVPIADLLLILAKRG-SKVPVIA----GGGINDPEDAAEALALGADGVIV  198 (200)
T ss_pred             CCcCCCCCccCchhHHHHHHHHHhc-CCCCEEE----ECCCCCHHHHHHHHHhCCCEEEe
Confidence            7554322    11112334444433 3345554    345655 7788888889998865

Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.

>PRK08208 coproporphyrinogen III oxidase; Validated

Probab=90.17  E-value=12  Score=39.07  Aligned_cols=87  Identities=14%  Similarity=0.033  Sum_probs=60.5

Q ss_pred             HhhHHHHHHcCCCEEEEecc-CchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcE-EEEEeeeecCCCCCCCCHHHHHH
Q 015894          175 LKGFEAAVAAGAKEVAIFAS-ASESFSKSNINCTIEDSLIRYRDVALAARELSIPV-RGYLSCVVGCPVEGMVPPSKVAY  252 (398)
Q Consensus       175 ~~~ie~a~~~Gv~~v~i~~~-~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v-~~~l~~~fg~~~~~r~~~~~l~~  252 (398)
                      .+-++...++|+..|.+-+- .++-. ...+|+.  ...+.+.++++.+++.|+.+ .+.++  +|.|..   +++.+.+
T Consensus       141 ~e~l~~l~~~G~~rvslGvQS~~~~~-L~~l~R~--~~~~~~~~ai~~l~~~g~~~i~~dlI--~GlP~q---t~e~~~~  212 (430)
T PRK08208        141 AEKLALLAARGVNRLSIGVQSFHDSE-LHALHRP--QKRADVHQALEWIRAAGFPILNIDLI--YGIPGQ---THASWME  212 (430)
T ss_pred             HHHHHHHHHcCCCEEEEecccCCHHH-HHHhCCC--CCHHHHHHHHHHHHHcCCCeEEEEee--cCCCCC---CHHHHHH
Confidence            45678888899999888544 33433 3344443  23456677889999999974 45554  676754   6788888


Q ss_pred             HHHHHHhCCCCEEEEcc
Q 015894          253 VSKQLYDMGCSEISLGD  269 (398)
Q Consensus       253 ~a~~l~~~Gad~I~L~D  269 (398)
                      .++.+.+.|++.|.+-.
T Consensus       213 ~l~~~~~l~~~~is~y~  229 (430)
T PRK08208        213 SLDQALVYRPEELFLYP  229 (430)
T ss_pred             HHHHHHhCCCCEEEEcc
Confidence            89999999998876543

>PRK08444 hypothetical protein; Provisional

Probab=90.08  E-value=1.2  Score=45.46  Aligned_cols=103  Identities=16%  Similarity=0.287  Sum_probs=69.9

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCH----HHHHHHHHHHHhhCCCCeEEEEeCC-----------ccchHH
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTP----GTVIPMLEAVLDAVPVDKLAVHFHD-----------TYGQAL  307 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P----~~v~~lv~~l~~~~p~~~l~~H~Hn-----------d~GlA~  307 (398)
                      ...+++.+.+.++++.+.|+.+|.|.  .| ..|    +.+.++++.+++.+|.+    |.|-           ..|+.+
T Consensus        78 y~ls~eeI~~~a~~a~~~G~~ei~iv--~G-~~p~~~~e~y~e~ir~Ik~~~p~i----~i~a~s~~Ei~~~a~~~g~~~  150 (353)
T PRK08444         78 YTMSHEEILEIVKNSVKRGIKEVHIV--SA-HNPNYGYEWYLEIFKKIKEAYPNL----HVKAMTAAEVDFLSRKFGKSY  150 (353)
T ss_pred             ccCCHHHHHHHHHHHHHCCCCEEEEe--cc-CCCCCCHHHHHHHHHHHHHHCCCc----eEeeCCHHHHHHHHHHcCCCH
Confidence            45788999999999999999999998  23 333    67889999999988863    4444           788888


Q ss_pred             HHHHHHH-HhCCCEEeeccccCCCCCC-----CCCCCCCccHHHHHHH---HHhCCCC
Q 015894          308 SNILASL-QMGISTVDSSVSGLGGCPY-----AKGASGNVATEDVVYM---LNGLGVR  356 (398)
Q Consensus       308 ANalaAl-~aGa~~VD~Sv~GlGecp~-----a~graGNa~lE~vv~~---L~~~Gi~  356 (398)
                      --.+..+ +||++.+..    -|.=-|     ..-.++..+.++.+..   .+++|+.
T Consensus       151 ~e~l~~LkeAGl~~~~g----~~aEi~~~~vr~~I~p~k~~~~~~~~i~~~a~~~Gi~  204 (353)
T PRK08444        151 EEVLEDMLEYGVDSMPG----GGAEIFDEEVRKKICKGKVSSERWLEIHKYWHKKGKM  204 (353)
T ss_pred             HHHHHHHHHhCcccCCC----CCchhcCHHHHhhhCCCCCCHHHHHHHHHHHHHcCCC
Confidence            7777776 589986653    111001     0112445666665555   4456765

>PF00809 Pterin_bind: Pterin binding enzyme This Prosite entry is a subset of the Pfam family; InterPro: IPR000489 The ~250-residue pterin-binding domain has been shown to adopt a (beta/alpha)8 barrel fold, which has the overall shape of a distorted cylinder

Probab=89.91  E-value=16  Score=34.31  Aligned_cols=152  Identities=20%  Similarity=0.210  Sum_probs=84.2

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCC-CCCcccCCCCHHHH----HHHHHhc----cCCcEEEEeCCHhhHHHHHHcC
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFV-SPKWVPQLADAKDV----MAAIQNV----EGARFPVLTPNLKGFEAAVAAG  185 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~-~~~~~p~~~D~~~v----~~~i~~~----~~~~l~~l~~n~~~ie~a~~~G  185 (398)
                      .++.+..++=+..+.+.|.++|++|.-. .|..-+  -+.++.    ...++.+    +++.++.=+++.+-++.+++.|
T Consensus        15 ~~~~~~a~~~a~~~~~~GAdiIDIg~~st~p~~~~--v~~~eE~~rl~~~l~~i~~~~~~~plSIDT~~~~v~~~aL~~g   92 (210)
T PF00809_consen   15 KFSEDEAVKRAREQVEAGADIIDIGAESTRPGATP--VSEEEEMERLVPVLQAIREENPDVPLSIDTFNPEVAEAALKAG   92 (210)
T ss_dssp             HHHHHHHHHHHHHHHHTT-SEEEEESSTSSTTSSS--SHHHHHHHHHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHT
T ss_pred             ccCHHHHHHHHHHHHHhcCCEEEecccccCCCCCc--CCHHHHHHHHHHHHHHHhccCCCeEEEEECCCHHHHHHHHHcC
Confidence            3555666677999999999999999654 232211  122222    2233322    3555555567888899999999


Q ss_pred             CCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHH----HHHHHHHH-----
Q 015894          186 AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPS----KVAYVSKQ-----  256 (398)
Q Consensus       186 v~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~----~l~~~a~~-----  256 (398)
                      ++.|.-..+..+                 ..+++..++++|..+.  +++.-+.|..-..+++    .+.++.+.     
T Consensus        93 ~~~ind~~~~~~-----------------~~~~~~l~a~~~~~vV--~m~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~i  153 (210)
T PF00809_consen   93 ADIINDISGFED-----------------DPEMLPLAAEYGAPVV--LMHSDGNPKGMPETADYRLDIAEEIIEFLEERI  153 (210)
T ss_dssp             SSEEEETTTTSS-----------------STTHHHHHHHHTSEEE--EESESSETTTTTSSHHHSHSHHHHHHHHHHHHH
T ss_pred             cceEEecccccc-----------------cchhhhhhhcCCCEEE--EEecccccccccccchhhhhHHHHHHHHHHHHH
Confidence            997765444321                 2355677888888664  4433322322222222    23333333     


Q ss_pred             --HHhCCC--CEEEEccCcCcC-CHHHHHHHHHHHH
Q 015894          257 --LYDMGC--SEISLGDTIGVG-TPGTVIPMLEAVL  287 (398)
Q Consensus       257 --l~~~Ga--d~I~L~DT~G~~-~P~~v~~lv~~l~  287 (398)
                        +..+|+  +.|.+==-+|.. ++.+-.++++.++
T Consensus       154 ~~l~~~Gi~~~~Ii~DPgigf~~~~~~~~~~l~~i~  189 (210)
T PF00809_consen  154 EALEKAGIPRERIILDPGIGFGKDPEQNLELLRNIE  189 (210)
T ss_dssp             HHHHHTT--GGGEEEETTTTSSTTHHHHHHHHHTHH
T ss_pred             HHHHHcCCCHHHEeeccccCcCCCHHHHHHHHHHHH
Confidence              444898  567665455553 2445555555444

It has eight alpha-helices stacked around the outside of an inner cylinder of parallel beta-strands. The pterin ring binds at the bottom of the (beta/alpha;)8 barrel in a polar cup-like region that is relatively solvent exposed and fairly negatively charged. The pterin ring is partially buried within the (beta/alpha)8 barrel. The pterin binding residues are highly conserved and include aspartate and asparagine residues located at the C terminus of the beta-strands of the barrel, which are predicted to form hydrogen bonds with the nitrogen and oxygen atoms of the pterin ring [, , ]. Some proteins known to contain a pterin-binding domain are listed below: Prokaryotic and eukaryotic B12-dependent methionine synthase (MetH) (2.1.1.13 from EC), a large, modular protein that catalyzes the transfer of a methyl group from methyltetrahydrofolate (CH3-H4folate) to Hcy to form methionine, using cobalamin as an intermediate methyl carrier. Prokaryotic and eukaryotic dihydropteroate synthase (DHPS) (2.5.1.15 from EC). It catalyzes the condensation of para-aminobenzoic acid (pABA) with 7,8- dihydropterin-pyrophosphate (DHPPP), eliminating pyrophosphate to form 7,8- dihydropteroate which is subsequently converted to tetrahydrofolate. Moorella thermoacetica 5-methyltetrahydrofolate corrinoid/iron sulphur protein methyltransferase (MeTr). It transfers the N5-methyl group from CH3-H4folate to a cob(I)amide centre in another protein, the corrinoid iron sulphur protein. ; GO: 0042558 pteridine-containing compound metabolic process; PDB: 2VP8_B 2BMB_A 2Y5S_B 2Y5J_A 3BOF_B 1Q7Q_B 1Q85_B 1Q7Z_A 1Q7M_A 1Q8A_B ....

>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase

Probab=89.73  E-value=14  Score=36.48  Aligned_cols=82  Identities=7%  Similarity=-0.016  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC--CCC--EEEEccCcCcCCHHHHHHHHHHHHhh
Q 015894          214 RYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM--GCS--EISLGDTIGVGTPGTVIPMLEAVLDA  289 (398)
Q Consensus       214 ~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~--Gad--~I~L~DT~G~~~P~~v~~lv~~l~~~  289 (398)
                      ...+.++.|++.|.....     ...|.-...+.+.+.+..+.+.++  +..  .-.++...|...|.+   ++..+.++
T Consensus        83 ~ai~~a~~A~~~Gad~v~-----v~pP~y~~~~~~~l~~~f~~ia~a~~~lpv~iYn~P~~tg~~l~~~---~l~~L~~~  154 (294)
T TIGR02313        83 ETLELTKFAEEAGADAAM-----VIVPYYNKPNQEALYDHFAEVADAVPDFPIIIYNIPGRAAQEIAPK---TMARLRKD  154 (294)
T ss_pred             HHHHHHHHHHHcCCCEEE-----EcCccCCCCCHHHHHHHHHHHHHhccCCCEEEEeCchhcCcCCCHH---HHHHHHhh
Confidence            334556778888886531     224555555667777766666543  333  335566777665533   44455555


Q ss_pred             CCCCeEEE-EeCCccc
Q 015894          290 VPVDKLAV-HFHDTYG  304 (398)
Q Consensus       290 ~p~~~l~~-H~Hnd~G  304 (398)
                      .|++ +++ +.+.|..
T Consensus       155 ~pnv-~giK~ss~d~~  169 (294)
T TIGR02313       155 CPNI-VGAKESNKDFE  169 (294)
T ss_pred             CCCE-EEEEeCCCCHH
Confidence            6764 555 4555543

This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.

>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional

Probab=89.66  E-value=9.6  Score=41.44  Aligned_cols=191  Identities=15%  Similarity=0.096  Sum_probs=101.1

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc--cC--CcEEEEe-CCHhhHHHHHHcCCCEEE
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV--EG--ARFPVLT-PNLKGFEAAVAAGAKEVA  190 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~--~~--~~l~~l~-~n~~~ie~a~~~Gv~~v~  190 (398)
                      -+++..++-+..|.++|.+.+-++.+.       +.+++.+....+.+  .+  +.+.+=. -+.+-...|++. ++.||
T Consensus        38 ~D~~atv~Qi~~l~~aGceiVRvtv~~-------~~~a~~l~~I~~~l~~~G~~iPLVADIHF~~~~A~~a~~~-v~kiR  109 (611)
T PRK02048         38 MDTEACVAQAKRIIDAGGEYVRLTTQG-------VREAENLMNINIGLRSQGYMVPLVADVHFNPKVADVAAQY-AEKVR  109 (611)
T ss_pred             ccHHHHHHHHHHHHHcCCCEEEEcCCC-------HHHHHhHHHHHHHHhhcCCCCCEEEecCCCcHHHHHHHHh-hCCEE
Confidence            456667888899999999999998643       23444333332332  22  3333322 233323445666 88888


Q ss_pred             EeccCchHHH----------hhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC---CC--CCHHHH----H
Q 015894          191 IFASASESFS----------KSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE---GM--VPPSKV----A  251 (398)
Q Consensus       191 i~~~~Sd~~~----------~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~---~r--~~~~~l----~  251 (398)
                      |=-. |=...          ...+....+..-+++..+++.||++|..++..+.  .|+-..   .+  .+|+-+    +
T Consensus       110 INPG-N~~~~~k~f~~~~Ytdeey~~el~~i~e~~~~~v~~ak~~~~~iRIGvN--~GSL~~~i~~~yg~tpe~mVeSAl  186 (611)
T PRK02048        110 INPG-NYVDPGRTFKKLEYTDEEYAQEIQKIRDRFVPFLNICKENHTAIRIGVN--HGSLSDRIMSRYGDTPEGMVESCM  186 (611)
T ss_pred             ECCC-cCCCccccccccccchhhhhhhhhhHHHHHHHHHHHHHHCCCCEEEecC--CcCchHHHHHHhCCChHHHHHHHH
Confidence            8211 10000          0001111233346677899999999999996555  333110   11  244433    3


Q ss_pred             HHHHHHHhCCCCE--EEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHH-HHHHHHHHhCC
Q 015894          252 YVSKQLYDMGCSE--ISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQAL-SNILASLQMGI  318 (398)
Q Consensus       252 ~~a~~l~~~Gad~--I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~-ANalaAl~aGa  318 (398)
                      +.++.+.+.|-+.  |+++.|.-.-.=...+.++..+.+.--+-||+++..-. |... ...-+|+..|.
T Consensus       187 e~~~i~e~~~f~diviS~KsS~~~~~V~AyRlLa~~l~~~g~dyPLHLGvTEA-G~~edg~IKSAigiGa  255 (611)
T PRK02048        187 EFLRICVEEHFTDVVISIKASNTVVMVRTVRLLVAVMEAEGMHYPLHLGVTEA-GDGEDGRIKSAVGIGA  255 (611)
T ss_pred             HHHHHHHHCCCCcEEEEEEeCCcHHHHHHHHHHHHHHHhcCCCCceEEEEecC-CCCcCceehhHHHHHH
Confidence            4566777888763  67777765333344555555554432223466555554 3222 23344444553

>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]

Probab=89.63  E-value=9.7  Score=33.97  Aligned_cols=94  Identities=26%  Similarity=0.379  Sum_probs=63.5

Q ss_pred             HHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCCHhhHHHHHHcCCCEEEEeccCchHHHhh
Q 015894          123 ELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKS  202 (398)
Q Consensus       123 ~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~  202 (398)
                      -++++|.++|+++|-.|.+.+|         +|                     -+++|++..++.|.+. +.+-.    
T Consensus        31 via~~l~d~GfeVi~~g~~~tp---------~e---------------------~v~aA~~~dv~vIgvS-sl~g~----   75 (143)
T COG2185          31 VIARALADAGFEVINLGLFQTP---------EE---------------------AVRAAVEEDVDVIGVS-SLDGG----   75 (143)
T ss_pred             HHHHHHHhCCceEEecCCcCCH---------HH---------------------HHHHHHhcCCCEEEEE-eccch----
Confidence            4788899999999998877653         22                     2346677788877774 33333    


Q ss_pred             hcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccC
Q 015894          203 NINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDT  270 (398)
Q Consensus       203 ~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT  270 (398)
                              ....+..+++.+++.|..-..   ...|    +-.+++.    ...+.++|+++|.-+.|
T Consensus        76 --------h~~l~~~lve~lre~G~~~i~---v~~G----Gvip~~d----~~~l~~~G~~~if~pgt  124 (143)
T COG2185          76 --------HLTLVPGLVEALREAGVEDIL---VVVG----GVIPPGD----YQELKEMGVDRIFGPGT  124 (143)
T ss_pred             --------HHHHHHHHHHHHHHhCCcceE---Eeec----CccCchh----HHHHHHhCcceeeCCCC
Confidence                    356677889999999986431   1122    3345555    44567899999998865

>PRK12857 fructose-1,6-bisphosphate aldolase; Reviewed

Probab=89.62  E-value=3.9  Score=40.50  Aligned_cols=120  Identities=16%  Similarity=0.191  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEccCc-CcCCHHHHHHHHHHHHhhCC
Q 015894          214 RYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGDTI-GVGTPGTVIPMLEAVLDAVP  291 (398)
Q Consensus       214 ~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~DT~-G~~~P~~v~~lv~~l~~~~p  291 (398)
                      .++++.+.|++.++-|- .+.+         ++.+.+..+++.+.+.+... |.+.... ....-..+..++..+.++.+
T Consensus         5 ~~k~iL~~A~~~~yaV~-AfNv---------~n~e~~~avi~AAee~~sPvIlq~~~~~~~~~g~~~~~~~~~~~A~~~~   74 (284)
T PRK12857          5 TVAELLKKAEKGGYAVG-AFNC---------NNMEIVQAIVAAAEAEKSPVIIQASQGAIKYAGIEYISAMVRTAAEKAS   74 (284)
T ss_pred             cHHHHHHHHHHcCCeEE-EEEe---------CCHHHHHHHHHHHHHhCCCEEEEechhHhhhCCHHHHHHHHHHHHHHCC
Confidence            35677888999998764 2321         36788889999999998774 5555432 22233456677777777765


Q ss_pred             CCeEEEEeCCccchHHHHHHHHHHhCCC--EEeeccccCCCCCCCCCCCCCc-cHHHHHHHHHhCCC
Q 015894          292 VDKLAVHFHDTYGQALSNILASLQMGIS--TVDSSVSGLGGCPYAKGASGNV-ATEDVVYMLNGLGV  355 (398)
Q Consensus       292 ~~~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGecp~a~graGNa-~lE~vv~~L~~~Gi  355 (398)
                       +|+.+|  =|.|........|+++|.+  ++|+|-..+-+         |. -|.+++.+.+..|+
T Consensus        75 -VPValH--LDH~~~~e~i~~ai~~GftSVM~DgS~lp~ee---------Ni~~T~~vv~~Ah~~gv  129 (284)
T PRK12857         75 -VPVALH--LDHGTDFEQVMKCIRNGFTSVMIDGSKLPLEE---------NIALTKKVVEIAHAVGV  129 (284)
T ss_pred             -CCEEEE--CCCCCCHHHHHHHHHcCCCeEEEeCCCCCHHH---------HHHHHHHHHHHHHHcCC
Confidence             466655  4777778899999999998  67999988877         65 56778777764433

>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []

Probab=89.62  E-value=2  Score=44.05  Aligned_cols=69  Identities=14%  Similarity=0.156  Sum_probs=44.3

Q ss_pred             hCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCC
Q 015894          259 DMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGG  330 (398)
Q Consensus       259 ~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGe  330 (398)
                      ..|.+.|.-+=.-++-+|+++.++|..||+..|..||++-.=-..+.....+. +.++|+|.|  +|.|-++
T Consensus       170 ~~g~~~iSP~~h~di~s~edl~~~I~~Lr~~~~~~pVgvKl~~~~~~~~~~~~-~~~ag~D~I--tIDG~~G  238 (368)
T PF01645_consen  170 PPGVDLISPPPHHDIYSIEDLAQLIEELRELNPGKPVGVKLVAGRGVEDIAAG-AAKAGADFI--TIDGAEG  238 (368)
T ss_dssp             -TT--EE--SS-TT-SSHHHHHHHHHHHHHH-TTSEEEEEEE-STTHHHHHHH-HHHTT-SEE--EEE-TT-
T ss_pred             CCCCccccCCCCCCcCCHHHHHHHHHHHHhhCCCCcEEEEECCCCcHHHHHHh-hhhccCCEE--EEeCCCC
Confidence            34777888777788889999999999999999888999987666665544443 889999965  3444454

This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.

>TIGR00683 nanA N-acetylneuraminate lyase

Probab=89.61  E-value=3.2  Score=40.91  Aligned_cols=82  Identities=10%  Similarity=0.109  Sum_probs=70.4

Q ss_pred             CCCCCHHHHHHHHHHHHhCC-CCEEEEccCcCc---CCHHHHHHHHHHHHhhCC-CCeEEEEe-CCccchHHHHHHHHHH
Q 015894          242 EGMVPPSKVAYVSKQLYDMG-CSEISLGDTIGV---GTPGTVIPMLEAVLDAVP-VDKLAVHF-HDTYGQALSNILASLQ  315 (398)
Q Consensus       242 ~~r~~~~~l~~~a~~l~~~G-ad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p-~~~l~~H~-Hnd~GlA~ANalaAl~  315 (398)
                      .+..|.+.+.+.++.+.+.| ++.|.+.-|+|-   +++++-.++++.+.+... .++|-+|. |++.--++..+..|-+
T Consensus        15 dg~iD~~~~~~~i~~~i~~G~v~gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~la~~a~~   94 (290)
T TIGR00683        15 DGTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATE   94 (290)
T ss_pred             CCCcCHHHHHHHHHHHHhCCCcCEEEECCcccccccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHH
Confidence            35789999999999999999 999999999885   677888888888887764 46788885 8888999999999999


Q ss_pred             hCCCEEee
Q 015894          316 MGISTVDS  323 (398)
Q Consensus       316 aGa~~VD~  323 (398)
                      +||+.|=.
T Consensus        95 ~Gad~v~v  102 (290)
T TIGR00683        95 LGYDCLSA  102 (290)
T ss_pred             hCCCEEEE
Confidence            99997766

N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.

>PRK14331 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=89.49  E-value=11  Score=39.27  Aligned_cols=143  Identities=14%  Similarity=0.155  Sum_probs=85.3

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEec--C-CCCCcccCCCCHHHHHHHHHhccC---CcEEEEeC---CHhhHHHHHHc-
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATS--F-VSPKWVPQLADAKDVMAAIQNVEG---ARFPVLTP---NLKGFEAAVAA-  184 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~--~-~~~~~~p~~~D~~~v~~~i~~~~~---~~l~~l~~---n~~~ie~a~~~-  184 (398)
                      ..+.+..++-++.|.+.|++.|.+..  + ..++.... ....++++.+.+.++   +++....+   +.+-++...++ 
T Consensus       174 sr~~e~V~~Ei~~l~~~g~~eI~l~d~~~~~y~~~~~~-~~~~~Ll~~l~~~~g~~~i~~~~~~p~~l~~ell~~~~~~~  252 (437)
T PRK14331        174 SRRLGSILDEVQWLVDDGVKEIHLIGQNVTAYGKDIGD-VPFSELLYAVAEIDGVERIRFTTGHPRDLDEDIIKAMADIP  252 (437)
T ss_pred             cCCHHHHHHHHHHHHHCCCeEEEEeeeccccccCCCCC-CCHHHHHHHHhcCCCccEEEEeccCcccCCHHHHHHHHcCC
Confidence            45788888888888889999887742  1 11111100 134556655554443   23333223   22345666666 


Q ss_pred             -CCCEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC
Q 015894          185 -GAKEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM  260 (398)
Q Consensus       185 -Gv~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~  260 (398)
                       |...+++-+ +.|+.-++ .+++.  ...+.+.++++.+++.  |+.+.++++  +|.|.+   +.+.+.+..+.+.+.
T Consensus       253 ~~~~~l~igiqSgsd~vLk-~m~R~--~t~~~~~~~v~~lr~~~~gi~i~~d~I--vG~PgE---T~ed~~~tl~~l~~l  324 (437)
T PRK14331        253 QVCEHLHLPFQAGSDRILK-LMDRG--YTKEEYLEKIELLKEYIPDITFSTDII--VGFPTE---TEEDFEETLDVLKKV  324 (437)
T ss_pred             ccCCceecccccCChHHHH-HcCCC--CCHHHHHHHHHHHHHhCCCCEEecCEE--EECCCC---CHHHHHHHHHHHHhc
Confidence             478787743 44554443 35442  2234555677888887  888776666  676765   567777778888888


Q ss_pred             CCCEEE
Q 015894          261 GCSEIS  266 (398)
Q Consensus       261 Gad~I~  266 (398)
                      +.+.+.
T Consensus       325 ~~~~i~  330 (437)
T PRK14331        325 EFEQVF  330 (437)
T ss_pred             Ccceee
Confidence            877644

>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional

Probab=89.49  E-value=8.4  Score=41.06  Aligned_cols=137  Identities=12%  Similarity=0.104  Sum_probs=88.6

Q ss_pred             HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894          178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL  257 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l  257 (398)
                      ++.-...|.|.+..++-..+      ...+++++-+.+....+.+++.--...-.=...| .+.-|-..++--.+-++.+
T Consensus       108 i~~Q~~iGsDI~~~LD~~t~------~~~~~~~~~~sv~rT~rwa~~~~~~~~~~~~~l~-giVQGg~~~dLR~~sa~~l  180 (487)
T PRK13533        108 LEFQRKIGSDIGVPLDIPTP------PDVDYEEAEEELEETLERLEEAAELIQDGDMLWV-APVQGGTYPDLREESAREA  180 (487)
T ss_pred             HHHHHHhCCCEEeECCccCC------CCCCHHHHHHHHHHHHHHHHHHHHhhhccCccEE-EEecCCCCHHHHHHHHHHH
Confidence            34445578898877754333      2335555555555555544332100000000112 2344556788888899999


Q ss_pred             HhCCCCEEEEccCcCcC---CHHHHHHHHHHHHhhCC-CCeEEEEeCCccchH-HHHHHHHHHhCCCEEeeccc
Q 015894          258 YDMGCSEISLGDTIGVG---TPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQA-LSNILASLQMGISTVDSSVS  326 (398)
Q Consensus       258 ~~~Gad~I~L~DT~G~~---~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA-~ANalaAl~aGa~~VD~Sv~  326 (398)
                      .++|.+.+.|.-.++.+   ...++.+++..++..+| +.|+.+.     |.| ..+...++..|+|.+|++.-
T Consensus       181 ~~~~f~gyaIGgl~~~~e~y~~~~~~~ii~~~~~~Lp~dkPryL~-----GvG~P~~i~~~V~lGvDlFD~v~p  249 (487)
T PRK13533        181 SKLGFDVYPIGAVVPLMERYRYDDLVDVVLAAKRGLGPGAPVHLF-----GAGHPMMFALAVALGCDLFDSAAY  249 (487)
T ss_pred             HhCCCCEEEEcCcccccccCCHHHHHHHHHHHHhhCCCCCceEEe-----CCCCHHHHHHHHHhCCCceeccHH
Confidence            99999999988766555   56889999999999986 5566553     444 46888999999999998753

>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]

Probab=89.47  E-value=16  Score=36.02  Aligned_cols=207  Identities=16%  Similarity=0.126  Sum_probs=125.1

Q ss_pred             CCCccEEEeCC---CcccCCCC----CCCC-CHHHHHHHHHHHHhcCCCEEEEecCC---CCCcccCCCCHHHHHHHHHh
Q 015894           94 VPGFVKIVEVG---PRDGLQNE----KNIV-PAVVKVELIKLLVSSGLAVVEATSFV---SPKWVPQLADAKDVMAAIQN  162 (398)
Q Consensus        94 ~p~~I~i~D~T---LRDG~Q~~----~~~~-~~~~k~~ia~~L~~aGv~~IEvG~~~---~~~~~p~~~D~~~v~~~i~~  162 (398)
                      ..+.+.++|+.   .+.|....    +..+ +.++.+.+|+.+.++|.+.+--|.|-   +|. -.|-.+. +-+..+++
T Consensus        26 ~~~~~tivd~~~~~~g~~~~~~viAGPCsvEs~E~i~~~A~~vk~~Ga~~lRGgafKPRTSPY-sFQGlge-~gL~~l~~  103 (286)
T COG2876          26 VKKEDTIVDVGDVVIGEGRALRVIAGPCSVESEEQVRETAESVKAAGAKALRGGAFKPRTSPY-SFQGLGE-EGLKLLKR  103 (286)
T ss_pred             ccccceeeccccceecCCcceEEEecCcccCCHHHHHHHHHHHHHcchhhccCCcCCCCCCcc-cccccCH-HHHHHHHH
Confidence            34456777765   44443221    2333 67888999999999999999988542   332 1222222 23334443


Q ss_pred             cc-CCcEEEE--eCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecC
Q 015894          163 VE-GARFPVL--TPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGC  239 (398)
Q Consensus       163 ~~-~~~l~~l--~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~  239 (398)
                      .. ..-+.++  +.+.++++.+.+. +|.+.|-.-        |     -+.++    +.+.+-+.+.+|-  +.-    
T Consensus       104 a~~~~Gl~vvtEvm~~~~~e~~~~y-~DilqvGAR--------N-----MQNF~----LLke~G~~~kPvL--LKR----  159 (286)
T COG2876         104 AADETGLPVVTEVMDVRDVEAAAEY-ADILQVGAR--------N-----MQNFA----LLKEVGRQNKPVL--LKR----  159 (286)
T ss_pred             HHHHcCCeeEEEecCHHHHHHHHhh-hhHHHhccc--------c-----hhhhH----HHHHhcccCCCeE--Eec----
Confidence            22 2333344  4688999988887 777776422        0     01222    2233334455553  221    


Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCEEEEccC----cCcCCHHH--HHHHHHHHHhh--CCCCeEEE-EeCCccchHHHHH
Q 015894          240 PVEGMVPPSKVAYVSKQLYDMGCSEISLGDT----IGVGTPGT--VIPMLEAVLDA--VPVDKLAV-HFHDTYGQALSNI  310 (398)
Q Consensus       240 ~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT----~G~~~P~~--v~~lv~~l~~~--~p~~~l~~-H~Hnd~GlA~ANa  310 (398)
                        .--.+.++++..++-+...|...|.||.-    .-..++..  +. -|-.+|+.  +|.+ +.. |.-+..-+-..-+
T Consensus       160 --g~~aTieEwL~AAEYI~s~GN~~vILCERGIRtfe~~TRntLDi~-aV~~~kq~THLPVi-vDpSH~~Grr~lv~pla  235 (286)
T COG2876         160 --GLSATIEEWLNAAEYILSHGNGNVILCERGIRTFEKATRNTLDIS-AVPILKQETHLPVI-VDPSHATGRRDLVEPLA  235 (286)
T ss_pred             --CccccHHHHHHHHHHHHhCCCCcEEEEecccccccccccceechH-HHHHHHhhcCCCEE-ECCCCcccchhhHHHHH
Confidence              11257899999999999999999999862    22233322  22 24445543  4632 333 8888899999999


Q ss_pred             HHHHHhCCCEEeeccccCCC
Q 015894          311 LASLQMGISTVDSSVSGLGG  330 (398)
Q Consensus       311 laAl~aGa~~VD~Sv~GlGe  330 (398)
                      .||+.+||+.+-..+..=-+
T Consensus       236 ~AA~AaGAdglmiEVHp~P~  255 (286)
T COG2876         236 KAAIAAGADGLMIEVHPDPE  255 (286)
T ss_pred             HHHHhccCCeeEEEecCCcc
Confidence            99999999988777764433

>PF03740 PdxJ: Pyridoxal phosphate biosynthesis protein PdxJ; InterPro: IPR004569 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=89.45  E-value=1.4  Score=42.51  Aligned_cols=74  Identities=26%  Similarity=0.386  Sum_probs=47.3

Q ss_pred             HHHHHHHHhc--cCCcEEEEe-CCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHH--HHHHHHHHHHHHHHhCCCc
Q 015894          154 KDVMAAIQNV--EGARFPVLT-PNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIE--DSLIRYRDVALAARELSIP  228 (398)
Q Consensus       154 ~~v~~~i~~~--~~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~--~~l~~~~~~v~~ak~~G~~  228 (398)
                      +.+...++++  .+++++.+. |..++++.|.+.|++.|-++.+   .+....-.....  +.++++..+.++|+++|+.
T Consensus       111 ~~l~~~i~~L~~~gIrvSLFiDP~~~qi~~A~~~Gad~VELhTG---~yA~a~~~~~~~~~ell~~l~~aa~~a~~lGL~  187 (239)
T PF03740_consen  111 DRLKPVIKRLKDAGIRVSLFIDPDPEQIEAAKELGADRVELHTG---PYANAFDDAEEAEEELLERLRDAARYAHELGLG  187 (239)
T ss_dssp             HHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHTT-SEEEEETH---HHHHHSSHHHHHHHHHHHHHHHHHHHHHHTT-E
T ss_pred             HHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHcCCCEEEEehh---HhhhhcCCHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence            4444445433  366777666 6788999999999999999765   222221111112  2369999999999999999


Q ss_pred             EE
Q 015894          229 VR  230 (398)
Q Consensus       229 v~  230 (398)
                      |.
T Consensus       188 Vn  189 (239)
T PF03740_consen  188 VN  189 (239)
T ss_dssp             EE
T ss_pred             Ee
Confidence            87

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. In Escherichia coli, the pdx genes involved in vitamin B6 have been characterised [, , ]. This entry represents PdxJ, which catalyses the condensation of 1-amino-3-oxo-4-(phosphohydroxy)propan-2-one and 1-deoxy-D-xylulose-5-phosphate to form pyridoxine-5'-phosphate. The product of the PdxJ reaction is then oxidized by PdxH to pyridoxal 5'-phosphate.; GO: 0008615 pyridoxine biosynthetic process, 0005737 cytoplasm; PDB: 3F4N_B 3O6D_A 3O6C_A 1M5W_G 1IXQ_D 1IXP_B 1IXN_A 1HO4_C 1HO1_A 1IXO_D ....

>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein

Probab=89.44  E-value=2.8  Score=43.06  Aligned_cols=89  Identities=11%  Similarity=0.135  Sum_probs=59.1

Q ss_pred             HHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccC-------cCcCCHHHHHHHHHH
Q 015894          213 IRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDT-------IGVGTPGTVIPMLEA  285 (398)
Q Consensus       213 ~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT-------~G~~~P~~v~~lv~~  285 (398)
                      +.+.++++.+|+.+..|-  +          |.++..+.++++.+.++|++.|.+-.|       .|...|..+.++++.
T Consensus       119 ~l~~~ii~~vr~a~Vtvk--i----------Rl~~~~~~e~a~~l~eAGad~I~ihgrt~~q~~~sg~~~p~~l~~~i~~  186 (369)
T TIGR01304       119 ELLGERIAEVRDSGVITA--V----------RVSPQNAREIAPIVVKAGADLLVIQGTLVSAEHVSTSGEPLNLKEFIGE  186 (369)
T ss_pred             HHHHHHHHHHHhcceEEE--E----------ecCCcCHHHHHHHHHHCCCCEEEEeccchhhhccCCCCCHHHHHHHHHH
Confidence            445666777777763222  1          234567788999999999999998755       355678766666554


Q ss_pred             HHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894          286 VLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD  322 (398)
Q Consensus       286 l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD  322 (398)
                          ++ +|+- +  .+ -.....++.++++||+.|.
T Consensus       187 ----~~-IPVI-~--G~-V~t~e~A~~~~~aGaDgV~  214 (369)
T TIGR01304       187 ----LD-VPVI-A--GG-VNDYTTALHLMRTGAAGVI  214 (369)
T ss_pred             ----CC-CCEE-E--eC-CCCHHHHHHHHHcCCCEEE
Confidence                33 3443 2  22 3345667888899999988

This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.

>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional

Probab=89.44  E-value=3.3  Score=41.07  Aligned_cols=82  Identities=13%  Similarity=0.081  Sum_probs=66.2

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCEEEEccCcCc---CCHHHHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHHHHHhC
Q 015894          242 EGMVPPSKVAYVSKQLYDMGCSEISLGDTIGV---GTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILASLQMG  317 (398)
Q Consensus       242 ~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANalaAl~aG  317 (398)
                      .++.|.+.+.++++.+.+.|++.|.+.-|+|-   +++++-.++++.+.+... .+++-+|.-.+..-++..+..|-++|
T Consensus        22 dg~iD~~~l~~li~~l~~~Gv~Gi~~~GstGE~~~Lt~eEr~~~~~~~~~~~~~~~pvi~gv~~~t~~~i~~~~~a~~~G  101 (303)
T PRK03620         22 DGSFDEAAYREHLEWLAPYGAAALFAAGGTGEFFSLTPDEYSQVVRAAVETTAGRVPVIAGAGGGTAQAIEYAQAAERAG  101 (303)
T ss_pred             CCCcCHHHHHHHHHHHHHcCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCCHHHHHHHHHHHHHhC
Confidence            35789999999999999999999999999984   567888888887777653 35666666546677888888899999


Q ss_pred             CCEEee
Q 015894          318 ISTVDS  323 (398)
Q Consensus       318 a~~VD~  323 (398)
                      ++.|=.
T Consensus       102 adav~~  107 (303)
T PRK03620        102 ADGILL  107 (303)
T ss_pred             CCEEEE
Confidence            998744

>PRK07379 coproporphyrinogen III oxidase; Provisional

Probab=89.39  E-value=6.2  Score=40.70  Aligned_cols=86  Identities=10%  Similarity=0.004  Sum_probs=59.5

Q ss_pred             HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHHH
Q 015894          175 LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIP-VRGYLSCVVGCPVEGMVPPSKVAYV  253 (398)
Q Consensus       175 ~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~-v~~~l~~~fg~~~~~r~~~~~l~~~  253 (398)
                      .+.++...++|+.+|.+-+-.-+-.....+|+.  ...+.+.++++.+++.|+. +.+.++  +|.|..   +.+.+.+-
T Consensus       115 ~e~l~~l~~~GvnrislGvQS~~d~~L~~l~R~--~~~~~~~~ai~~l~~~G~~~v~~dlI--~GlPgq---t~e~~~~t  187 (400)
T PRK07379        115 LEQLQGYRSLGVNRVSLGVQAFQDELLALCGRS--HRVKDIFAAVDLIHQAGIENFSLDLI--SGLPHQ---TLEDWQAS  187 (400)
T ss_pred             HHHHHHHHHCCCCEEEEEcccCCHHHHHHhCCC--CCHHHHHHHHHHHHHcCCCeEEEEee--cCCCCC---CHHHHHHH
Confidence            456778888999988886544333334445442  2233445667888999998 666666  677754   57888888


Q ss_pred             HHHHHhCCCCEEEE
Q 015894          254 SKQLYDMGCSEISL  267 (398)
Q Consensus       254 a~~l~~~Gad~I~L  267 (398)
                      ++.+.+++++.|.+
T Consensus       188 l~~~~~l~p~~is~  201 (400)
T PRK07379        188 LEAAIALNPTHLSC  201 (400)
T ss_pred             HHHHHcCCCCEEEE
Confidence            88899999988754

>PRK07084 fructose-bisphosphate aldolase; Provisional

Probab=89.32  E-value=2.5  Score=42.55  Aligned_cols=107  Identities=9%  Similarity=0.087  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCC-EEEEccCc-CcCCHHHHHHHH---HHH
Q 015894          212 LIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCS-EISLGDTI-GVGTPGTVIPML---EAV  286 (398)
Q Consensus       212 l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad-~I~L~DT~-G~~~P~~v~~lv---~~l  286 (398)
                      +-.++++.+.|++.|+-|-+ +.         -.+.+.+..+++.+.+.+.. +|.+.... ..+.+..+..++   ..+
T Consensus         9 lv~~k~lL~~A~~~~yAV~A-fN---------~~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~g~~~~~~~~~~~~~~   78 (321)
T PRK07084          9 LVNTREMFAKAVKGGYAIPA-YN---------FNNMEQLQAIIQACVETKSPVILQVSKGARKYANATLLRYMAQGAVEY   78 (321)
T ss_pred             ccCHHHHHHHHHHCCceEEE-EE---------eCCHHHHHHHHHHHHHhCCCEEEEechhHHhhCCchHHHHHHHHHHHH
Confidence            45567888999999997742 22         13678899999999999977 45555433 222222233344   444


Q ss_pred             HhhCC-CCeEEEEeCCccchHHHHHHHHHHhCCC--EEeeccccCCC
Q 015894          287 LDAVP-VDKLAVHFHDTYGQALSNILASLQMGIS--TVDSSVSGLGG  330 (398)
Q Consensus       287 ~~~~p-~~~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGe  330 (398)
                      .+... .+|+.+|.  |.|.-...+..|+++|.+  ++|+|-..+-+
T Consensus        79 a~~a~~~VPV~lHL--DHg~~~e~i~~ai~~GftSVMiD~S~lp~ee  123 (321)
T PRK07084         79 AKELGCPIPIVLHL--DHGDSFELCKDCIDSGFSSVMIDGSHLPYEE  123 (321)
T ss_pred             HHHcCCCCcEEEEC--CCCCCHHHHHHHHHcCCCEEEeeCCCCCHHH
Confidence            44331 35666654  667778899999999998  67999776554

>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis

Probab=89.32  E-value=8.2  Score=37.54  Aligned_cols=99  Identities=13%  Similarity=0.085  Sum_probs=51.4

Q ss_pred             HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894          178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL  257 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l  257 (398)
                      ++.+.+.-.+.+-+++.++..        +.    +...+.++.|++.|.....     ...|.....+.+.+.+..+.+
T Consensus        59 ~~~~~~~~~~~~~vi~gv~~~--------~~----~~~~~~a~~a~~~G~d~v~-----~~~P~~~~~~~~~l~~~~~~i  121 (284)
T cd00950          59 IEAVVEAVNGRVPVIAGTGSN--------NT----AEAIELTKRAEKAGADAAL-----VVTPYYNKPSQEGLYAHFKAI  121 (284)
T ss_pred             HHHHHHHhCCCCcEEeccCCc--------cH----HHHHHHHHHHHHcCCCEEE-----EcccccCCCCHHHHHHHHHHH
Confidence            455555433455566665542        22    3334556778888887431     113444455667777777776


Q ss_pred             HhC-CCCE--EEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEE
Q 015894          258 YDM-GCSE--ISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVH  298 (398)
Q Consensus       258 ~~~-Gad~--I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H  298 (398)
                      .+. +...  ..++...|...+.+   ++..+.+ .|.+ +++.
T Consensus       122 a~~~~~pi~lYn~P~~~g~~ls~~---~~~~L~~-~p~v-~giK  160 (284)
T cd00950         122 AEATDLPVILYNVPGRTGVNIEPE---TVLRLAE-HPNI-VGIK  160 (284)
T ss_pred             HhcCCCCEEEEEChhHhCCCCCHH---HHHHHhc-CCCE-EEEE
Confidence            664 4332  24555566544422   2333333 3653 5664

It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.

>TIGR00674 dapA dihydrodipicolinate synthase

Probab=89.22  E-value=7.3  Score=38.12  Aligned_cols=104  Identities=12%  Similarity=0.027  Sum_probs=54.5

Q ss_pred             HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894          178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL  257 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l  257 (398)
                      ++.+++.-...+.++.+++..            ..+...+.++.|++.|.....     ...|...+.+.+.+.+..+.+
T Consensus        57 ~~~~~~~~~~~~~vi~gv~~~------------s~~~~i~~a~~a~~~Gad~v~-----v~pP~y~~~~~~~i~~~~~~i  119 (285)
T TIGR00674        57 IEFVVDLVNGRVPVIAGTGSN------------ATEEAISLTKFAEDVGADGFL-----VVTPYYNKPTQEGLYQHFKAI  119 (285)
T ss_pred             HHHHHHHhCCCCeEEEeCCCc------------cHHHHHHHHHHHHHcCCCEEE-----EcCCcCCCCCHHHHHHHHHHH
Confidence            455555433455566665432            233344556788888887431     123544555677777766666


Q ss_pred             HhC-CCCE--EEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEE-EeCCcc
Q 015894          258 YDM-GCSE--ISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAV-HFHDTY  303 (398)
Q Consensus       258 ~~~-Gad~--I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~-H~Hnd~  303 (398)
                      .+. +...  ..++...|.-.+.+   ++..+.+ .|++ +++ ..+.|.
T Consensus       120 ~~~~~~pi~lYn~P~~tg~~l~~~---~l~~L~~-~~~v-~giK~s~~d~  164 (285)
T TIGR00674       120 AEEVDLPIILYNVPSRTGVSLYPE---TVKRLAE-EPNI-VAIKEATGNL  164 (285)
T ss_pred             HhcCCCCEEEEECcHHhcCCCCHH---HHHHHHc-CCCE-EEEEeCCCCH
Confidence            553 3333  34555667555433   3333333 4553 566 455443

Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.

>PRK14336 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=89.08  E-value=16  Score=37.96  Aligned_cols=144  Identities=17%  Similarity=0.220  Sum_probs=83.8

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCc---ccCCCCHHHHHHHHHhccC---CcEEEEeCC---HhhHHHHHHc-
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKW---VPQLADAKDVMAAIQNVEG---ARFPVLTPN---LKGFEAAVAA-  184 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~---~p~~~D~~~v~~~i~~~~~---~~l~~l~~n---~~~ie~a~~~-  184 (398)
                      ..+.++.++=++.|.+.|++.|-+.-..-..+   .+......++++.+...++   +++....+.   .+-++...+. 
T Consensus       152 srs~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~i~~ell~~l~~~~  231 (418)
T PRK14336        152 SRSIAEIGCEVAELVRRGSREVVLLGQNVDSYGHDLPEKPCLADLLSALHDIPGLLRIRFLTSHPKDISQKLIDAMAHLP  231 (418)
T ss_pred             cCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCcccHHHHHHHHHhcCCccEEEEeccChhhcCHHHHHHHHhcC
Confidence            57788888888899999999887752210001   1111234455555555443   233333332   2334445553 


Q ss_pred             -CCCEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC
Q 015894          185 -GAKEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM  260 (398)
Q Consensus       185 -Gv~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~  260 (398)
                       +...+++-+ +.||.-++ .+++.  ...+.+.++++.+++.  |+.+.++++  +|.|.+   +.+.+.+.++.+.+.
T Consensus       232 ~~~~~l~lglQSgsd~vLk-~M~R~--~~~~~~~~~i~~lr~~~pgi~i~~d~I--vGfPGE---T~edf~~tl~fi~~~  303 (418)
T PRK14336        232 KVCRSLSLPVQAGDDTILA-AMRRG--YTNQQYRELVERLKTAMPDISLQTDLI--VGFPSE---TEEQFNQSYKLMADI  303 (418)
T ss_pred             ccCCceecCCCcCCHHHHH-HhCCC--CCHHHHHHHHHHHHhhCCCCEEEEEEE--EECCCC---CHHHHHHHHHHHHhc
Confidence             467777643 33444333 34332  1244556778888887  888877776  666765   467777777777888


Q ss_pred             CCCEEE
Q 015894          261 GCSEIS  266 (398)
Q Consensus       261 Gad~I~  266 (398)
                      +.+.+.
T Consensus       304 ~~~~~~  309 (418)
T PRK14336        304 GYDAIH  309 (418)
T ss_pred             CCCEEE
Confidence            877653

>PRK14041 oxaloacetate decarboxylase; Provisional

Probab=89.06  E-value=3.9  Score=43.26  Aligned_cols=17  Identities=12%  Similarity=0.110  Sum_probs=9.2

Q ss_pred             HHHHHHHHHHHHHhCCC
Q 015894          362 RKLMIAGDFICKHLGRT  378 (398)
Q Consensus       362 ~~L~~~~~~v~~~~g~~  378 (398)
                      ..+.++...+.+..+++
T Consensus       182 ~~v~~Lv~~lk~~~~vp  198 (467)
T PRK14041        182 KRAYELVKALKKKFGVP  198 (467)
T ss_pred             HHHHHHHHHHHHhcCCc
Confidence            45555555555555433

>TIGR01125 MiaB-like tRNA modifying enzyme YliG, TIGR01125

Probab=89.06  E-value=25  Score=36.46  Aligned_cols=143  Identities=16%  Similarity=0.086  Sum_probs=82.7

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecC-C--CCCcccCCCCHHHHHHHHHhccCCcEE---EEeC---CHhhHHHHHHcC
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSF-V--SPKWVPQLADAKDVMAAIQNVEGARFP---VLTP---NLKGFEAAVAAG  185 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~-~--~~~~~p~~~D~~~v~~~i~~~~~~~l~---~l~~---n~~~ie~a~~~G  185 (398)
                      ..+.++.++=++.|.+.|++.|.+... .  ...-........++++.+.+.++....   .+-+   +.+-++...++|
T Consensus       163 ~r~~e~Vv~Ei~~l~~~g~k~i~~~~~d~~~~g~d~~~~~~l~~Ll~~i~~~~~i~~~r~~~~~p~~~~~ell~~~~~~~  242 (430)
T TIGR01125       163 SRPIEEILKEAERLVDQGVKEIILIAQDTTAYGKDLYRESKLVDLLEELGKVGGIYWIRMHYLYPDELTDDVIDLMAEGP  242 (430)
T ss_pred             ecCHHHHHHHHHHHHHCCCcEEEEEeECCCccccCCCCcccHHHHHHHHHhcCCccEEEEccCCcccCCHHHHHHHhhCC
Confidence            357788888888888889988875421 1  000000012456677766654433221   1212   234456666764


Q ss_pred             --CCEEEEe-ccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC
Q 015894          186 --AKEVAIF-ASASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM  260 (398)
Q Consensus       186 --v~~v~i~-~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~  260 (398)
                        ...+++- =+.|+.-++ .+++.  ...+.+.++++.++++  |+.+.++++  +|.|.+   +.+.+.+.++.+.+.
T Consensus       243 ~~~~~l~iglES~s~~vLk-~m~k~--~~~~~~~~~i~~l~~~~~~i~i~~~~I--~G~PgE---T~e~~~~t~~fl~~~  314 (430)
T TIGR01125       243 KVLPYLDIPLQHASDRILK-LMRRP--GSGEQQLDFIERLREKCPDAVLRTTFI--VGFPGE---TEEDFQELLDFVEEG  314 (430)
T ss_pred             cccCceEeCCCCCCHHHHh-hCCCC--CCHHHHHHHHHHHHHhCCCCeEeEEEE--EECCCC---CHHHHHHHHHHHHhc
Confidence              6777763 445554333 34442  1235566777888887  455555554  777765   567777888888888


Q ss_pred             CCCEE
Q 015894          261 GCSEI  265 (398)
Q Consensus       261 Gad~I  265 (398)
                      +.+.+
T Consensus       315 ~~~~~  319 (430)
T TIGR01125       315 QFDRL  319 (430)
T ss_pred             CCCEE
Confidence            87654

This clade spans alpha and gamma proteobacteria, cyano bacteria, deinococcus, porphyromonas, aquifex, helicobacter, campylobacter, thermotoga, chlamydia, streptococcus coelicolor and clostridium, but does not include most other gram positive bacteria, archaea or eukaryotes.

>PRK04147 N-acetylneuraminate lyase; Provisional

Probab=89.00  E-value=3.5  Score=40.59  Aligned_cols=83  Identities=13%  Similarity=0.169  Sum_probs=70.3

Q ss_pred             CCCCCHHHHHHHHHHHHh-CCCCEEEEccCcCc---CCHHHHHHHHHHHHhhCC-CCeEEEEe-CCccchHHHHHHHHHH
Q 015894          242 EGMVPPSKVAYVSKQLYD-MGCSEISLGDTIGV---GTPGTVIPMLEAVLDAVP-VDKLAVHF-HDTYGQALSNILASLQ  315 (398)
Q Consensus       242 ~~r~~~~~l~~~a~~l~~-~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p-~~~l~~H~-Hnd~GlA~ANalaAl~  315 (398)
                      .+..|.+-+.++++.+.+ .|++.|.++-|+|-   ++.++-.++++.+.+..+ .++|-++. +++.--++..+..|-+
T Consensus        18 dg~iD~~~~~~li~~l~~~~Gv~gi~v~GstGE~~~Ls~eEr~~~~~~~~~~~~~~~~viagvg~~~t~~ai~~a~~a~~   97 (293)
T PRK04147         18 DGQIDEQGLRRLVRFNIEKQGIDGLYVGGSTGEAFLLSTEEKKQVLEIVAEEAKGKVKLIAQVGSVNTAEAQELAKYATE   97 (293)
T ss_pred             CCCcCHHHHHHHHHHHHhcCCCCEEEECCCccccccCCHHHHHHHHHHHHHHhCCCCCEEecCCCCCHHHHHHHHHHHHH
Confidence            357899999999999999 99999999999986   567777777887777765 36778887 7889999999999999


Q ss_pred             hCCCEEeec
Q 015894          316 MGISTVDSS  324 (398)
Q Consensus       316 aGa~~VD~S  324 (398)
                      +||+.|=+.
T Consensus        98 ~Gad~v~v~  106 (293)
T PRK04147         98 LGYDAISAV  106 (293)
T ss_pred             cCCCEEEEe
Confidence            999977654

>PRK11572 copper homeostasis protein CutC; Provisional

Probab=88.95  E-value=11  Score=36.71  Aligned_cols=136  Identities=18%  Similarity=0.147  Sum_probs=84.9

Q ss_pred             EEEEeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHh-CCCcEEEEEeeeecCCCC--CC
Q 015894          168 FPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARE-LSIPVRGYLSCVVGCPVE--GM  244 (398)
Q Consensus       168 l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~-~G~~v~~~l~~~fg~~~~--~r  244 (398)
                      +-+.+-+..+...|.+.|+++|-+....+.-      |.|+...      .++.+++ ..++|.+-|=     |..  .-
T Consensus         4 lEvcv~s~~~a~~A~~~GAdRiELc~~L~~G------GlTPS~g------~i~~~~~~~~ipv~vMIR-----PR~gdF~   66 (248)
T PRK11572          4 LEICCYSMECALTAQQAGADRIELCAAPKEG------GLTPSLG------VLKSVRERVTIPVHPIIR-----PRGGDFC   66 (248)
T ss_pred             EEEEECCHHHHHHHHHcCCCEEEEccCcCCC------CcCCCHH------HHHHHHHhcCCCeEEEEe-----cCCCCCC
Confidence            3455678889999999999999997654431      3443322      2333333 3676653332     222  24


Q ss_pred             CCHHHHHH---HHHHHHhCCCCEEEE--ccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHH-HHHHhCC
Q 015894          245 VPPSKVAY---VSKQLYDMGCSEISL--GDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNIL-ASLQMGI  318 (398)
Q Consensus       245 ~~~~~l~~---~a~~l~~~Gad~I~L--~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANal-aAl~aGa  318 (398)
                      |+.+++..   -++.+.++|++.|.+  =|.-|...-..+.++++..    .+.++.||-=-|.=.-.-.++ ..++.|+
T Consensus        67 Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~a----~~~~vTFHRAfD~~~d~~~al~~l~~lG~  142 (248)
T PRK11572         67 YSDGEFAAMLEDIATVRELGFPGLVTGVLDVDGHVDMPRMRKIMAAA----GPLAVTFHRAFDMCANPLNALKQLADLGV  142 (248)
T ss_pred             CCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHh----cCCceEEechhhccCCHHHHHHHHHHcCC
Confidence            66665554   466777899997654  4666777777777777665    345788886655433223333 3567899


Q ss_pred             CEEeec
Q 015894          319 STVDSS  324 (398)
Q Consensus       319 ~~VD~S  324 (398)
                      ++|=||
T Consensus       143 ~rILTS  148 (248)
T PRK11572        143 ARILTS  148 (248)
T ss_pred             CEEECC
Confidence            999887

>PRK14327 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=88.90  E-value=21  Score=38.30  Aligned_cols=145  Identities=14%  Similarity=0.146  Sum_probs=83.6

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecC---CCCCcccC-CCCHHHHHHHHHhc--cCCcEEEEeC---CHhhHHHHHHcC
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSF---VSPKWVPQ-LADAKDVMAAIQNV--EGARFPVLTP---NLKGFEAAVAAG  185 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~---~~~~~~p~-~~D~~~v~~~i~~~--~~~~l~~l~~---n~~~ie~a~~~G  185 (398)
                      ..+.++.++-++.|.+.|+..|.+...   ...+.... -....++++.+...  +.+++...-+   +.+-++...+.|
T Consensus       240 sr~~e~Ii~Ei~~l~~~G~keI~L~g~n~~~yg~d~~~~~~~l~~Ll~~I~~~~i~~ir~~s~~P~~i~deli~~m~~~g  319 (509)
T PRK14327        240 SRRPEDIIQEVRHLARQGYKEITLLGQNVNAYGKDFEDIEYGLGDLMDEIRKIDIPRVRFTTSHPRDFDDHLIEVLAKGG  319 (509)
T ss_pred             eCCHHHHHHHHHHHHHCCCcEEEEEeeccccCcccccccchHHHHHHHHHHhCCCceEEEeecCcccCCHHHHHHHHhcC
Confidence            467888898889999999987766421   11110000 01134555555543  2334444333   223456666777


Q ss_pred             --CCEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC
Q 015894          186 --AKEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM  260 (398)
Q Consensus       186 --v~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~  260 (398)
                        +..+++-+ +.|+.-++ .+|+.  -..+.+.++++.+++.  ++.+...++  +|.|.+   +.+.+.+.++.+.+.
T Consensus       320 ~~~~~l~lgvQSgsd~vLk-~M~R~--~t~e~~~~~v~~lr~~~p~i~i~tdiI--vGfPgE---T~edf~~Tl~~v~~l  391 (509)
T PRK14327        320 NLVEHIHLPVQSGSTEVLK-IMARK--YTRESYLELVRKIKEAIPNVALTTDII--VGFPNE---TDEQFEETLSLYREV  391 (509)
T ss_pred             CccceEEeccCCCCHHHHH-hcCCC--CCHHHHHHHHHHHHHhCCCcEEeeeEE--EeCCCC---CHHHHHHHHHHHHHc
Confidence              56788754 34554443 34442  1234556777888887  555555554  777765   467777777778888


Q ss_pred             CCCEEEE
Q 015894          261 GCSEISL  267 (398)
Q Consensus       261 Gad~I~L  267 (398)
                      +.+.+.+
T Consensus       392 ~~d~~~~  398 (509)
T PRK14327        392 GFDHAYT  398 (509)
T ss_pred             CCCeEEE
Confidence            8776543

>PRK03170 dihydrodipicolinate synthase; Provisional

Probab=88.87  E-value=11  Score=36.97  Aligned_cols=104  Identities=12%  Similarity=0.038  Sum_probs=54.4

Q ss_pred             HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894          178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL  257 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l  257 (398)
                      ++.+++.-.+.+-++.+++..        +    .+...+.++.|++.|.....     ...|.-...+.+.+.+..+.+
T Consensus        60 ~~~~~~~~~~~~~vi~gv~~~--------~----~~~~i~~a~~a~~~G~d~v~-----~~pP~~~~~~~~~i~~~~~~i  122 (292)
T PRK03170         60 IRAVVEAVNGRVPVIAGTGSN--------S----TAEAIELTKFAEKAGADGAL-----VVTPYYNKPTQEGLYQHFKAI  122 (292)
T ss_pred             HHHHHHHhCCCCcEEeecCCc--------h----HHHHHHHHHHHHHcCCCEEE-----ECCCcCCCCCHHHHHHHHHHH
Confidence            455555433445555555431        2    23344556778888886431     113544455667777777666


Q ss_pred             HhC-CCCE--EEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEE-eCCcc
Q 015894          258 YDM-GCSE--ISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVH-FHDTY  303 (398)
Q Consensus       258 ~~~-Gad~--I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H-~Hnd~  303 (398)
                      .+. +...  -.++...|...+.   +++..+. ..|.+ +++. .+.|.
T Consensus       123 a~~~~~pv~lYn~P~~~g~~l~~---~~~~~L~-~~p~v-~giK~s~~d~  167 (292)
T PRK03170        123 AEATDLPIILYNVPGRTGVDILP---ETVARLA-EHPNI-VGIKEATGDL  167 (292)
T ss_pred             HhcCCCCEEEEECccccCCCCCH---HHHHHHH-cCCCE-EEEEECCCCH
Confidence            653 3332  2355566765553   3444443 46764 5663 45553

>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis

Probab=88.84  E-value=3.6  Score=40.05  Aligned_cols=83  Identities=14%  Similarity=0.099  Sum_probs=69.0

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcC---cCCHHHHHHHHHHHHhhCC-CCeEEEEeC-CccchHHHHHHHHHHhC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIG---VGTPGTVIPMLEAVLDAVP-VDKLAVHFH-DTYGQALSNILASLQMG  317 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~lv~~l~~~~p-~~~l~~H~H-nd~GlA~ANalaAl~aG  317 (398)
                      +..|.+.+.+.++.+.+.|++.|.+.-|+|   .++.++-.++++.+.+... .++|-+|.- ++..-++..+..|.++|
T Consensus        16 g~iD~~~~~~~i~~l~~~Gv~gl~v~GstGE~~~lt~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~~~~a~~a~~~G   95 (284)
T cd00950          16 GSVDFDALERLIEFQIENGTDGLVVCGTTGESPTLSDEEHEAVIEAVVEAVNGRVPVIAGTGSNNTAEAIELTKRAEKAG   95 (284)
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECCCCcchhhCCHHHHHHHHHHHHHHhCCCCcEEeccCCccHHHHHHHHHHHHHcC
Confidence            578999999999999999999999999998   5667778888888887764 467777775 57888899999999999


Q ss_pred             CCEEeecc
Q 015894          318 ISTVDSSV  325 (398)
Q Consensus       318 a~~VD~Sv  325 (398)
                      ++.|=..-
T Consensus        96 ~d~v~~~~  103 (284)
T cd00950          96 ADAALVVT  103 (284)
T ss_pred             CCEEEEcc
Confidence            99876653

It catalyzes the aldol condensation of L-aspartate-beta- semialdehyde and pyruvate to dihydropicolinic acid via a Schiff base formation between pyruvate and a lysine residue. The functional enzyme is a homotetramer consisting of a dimer of dimers. DHDPS is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways.

>PRK11320 prpB 2-methylisocitrate lyase; Provisional

Probab=88.80  E-value=7.8  Score=38.57  Aligned_cols=134  Identities=18%  Similarity=0.272  Sum_probs=84.7

Q ss_pred             HHHHHHcCCCEEEEecc-Cc-hHHHhhhc-CCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHH
Q 015894          178 FEAAVAAGAKEVAIFAS-AS-ESFSKSNI-NCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVS  254 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~-~S-d~~~~~~~-~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a  254 (398)
                      .+.+.++|.+-+.+.-. ++ -.+-..-. -.+.++.++.++++++.   ..++|.+.+-       .+--++..+...+
T Consensus        30 Ari~e~~Gf~ai~~Sg~~~a~~~lG~PD~g~l~~~e~~~~~~~I~~~---~~iPviaD~d-------~GyG~~~~v~r~V   99 (292)
T PRK11320         30 ALLAERAGFKAIYLSGGGVAAASLGLPDLGITTLDDVLIDVRRITDA---CDLPLLVDID-------TGFGGAFNIARTV   99 (292)
T ss_pred             HHHHHHcCCCEEEeCHHHHHhHhcCCCCCCCCCHHHHHHHHHHHHhc---cCCCEEEECC-------CCCCCHHHHHHHH
Confidence            45566788887766311 11 11000001 23677777777665553   3577754333       2323788899999


Q ss_pred             HHHHhCCCCEEEEccCc-----C------cCCHHHHHHHHHHHHhhCCCCeEEEEe------CCccchHHHHHHHHHHhC
Q 015894          255 KQLYDMGCSEISLGDTI-----G------VGTPGTVIPMLEAVLDAVPVDKLAVHF------HDTYGQALSNILASLQMG  317 (398)
Q Consensus       255 ~~l~~~Gad~I~L~DT~-----G------~~~P~~v~~lv~~l~~~~p~~~l~~H~------Hnd~GlA~ANalaAl~aG  317 (398)
                      +++.++|+-.|.|-|.+     |      +..++++...|++.++.-.+..+-+=.      .+.+--|+.-+.+-.+||
T Consensus       100 ~~~~~aGaagi~IEDq~~pK~cg~~~~~~lv~~ee~~~kI~Aa~~a~~~~d~~IiARTDa~~~~g~deAI~Ra~aY~eAG  179 (292)
T PRK11320        100 KSMIKAGAAAVHIEDQVGAKRCGHRPNKEIVSQEEMVDRIKAAVDARTDPDFVIMARTDALAVEGLDAAIERAQAYVEAG  179 (292)
T ss_pred             HHHHHcCCeEEEEecCCCccccCCCCCCcccCHHHHHHHHHHHHHhccCCCeEEEEecCcccccCHHHHHHHHHHHHHcC
Confidence            99999999999999987     3      345677777787777654222222222      233557888999999999


Q ss_pred             CCEE
Q 015894          318 ISTV  321 (398)
Q Consensus       318 a~~V  321 (398)
                      ||.|
T Consensus       180 AD~i  183 (292)
T PRK11320        180 ADMI  183 (292)
T ss_pred             CCEE
Confidence            9965

>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases

Probab=88.80  E-value=12  Score=35.34  Aligned_cols=121  Identities=21%  Similarity=0.194  Sum_probs=79.0

Q ss_pred             CCHHHHHHHHHHHHhc-CCCEEEEecCCCCCcccCCCCHHHHHHHHHhc--cCCcEEE-EeCCHhhHHHHHHcCCCEEEE
Q 015894          116 VPAVVKVELIKLLVSS-GLAVVEATSFVSPKWVPQLADAKDVMAAIQNV--EGARFPV-LTPNLKGFEAAVAAGAKEVAI  191 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~a-Gv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~--~~~~l~~-l~~n~~~ie~a~~~Gv~~v~i  191 (398)
                      .+.++.++.++.|.+. |.-.|++..  ..          +=+.+++.+  .++++.+ .+-+..+...|+++|++.|..
T Consensus        61 ~~~e~~i~~a~~l~~~~~~~~iKIP~--T~----------~gl~ai~~L~~~gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP  128 (211)
T cd00956          61 TDAEGMVAEARKLASLGGNVVVKIPV--TE----------DGLKAIKKLSEEGIKTNVTAIFSAAQALLAAKAGATYVSP  128 (211)
T ss_pred             CCHHHHHHHHHHHHHhCCCEEEEEcC--cH----------hHHHHHHHHHHcCCceeeEEecCHHHHHHHHHcCCCEEEE
Confidence            5688889999999888 665666632  21          223333322  2555443 456888889999999999888


Q ss_pred             eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 015894          192 FASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG  268 (398)
Q Consensus       192 ~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~  268 (398)
                      |+.--+     +.+.   +.++.++++.+++++.|+....-.        ++-.++..+.+    +..+|+|.+.++
T Consensus       129 ~vgR~~-----~~g~---dg~~~i~~i~~~~~~~~~~tkil~--------As~r~~~ei~~----a~~~Gad~vTv~  185 (211)
T cd00956         129 FVGRID-----DLGG---DGMELIREIRTIFDNYGFDTKILA--------ASIRNPQHVIE----AALAGADAITLP  185 (211)
T ss_pred             ecChHh-----hcCC---CHHHHHHHHHHHHHHcCCCceEEe--------cccCCHHHHHH----HHHcCCCEEEeC
Confidence            766221     2333   456777788899999998866322        12235555444    446999999886

FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.

>TIGR02351 thiH thiazole biosynthesis protein ThiH

Probab=88.78  E-value=8.4  Score=39.27  Aligned_cols=77  Identities=12%  Similarity=0.082  Sum_probs=53.6

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEccCcCc----CCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCE
Q 015894          245 VPPSKVAYVSKQLYDMGCSEISLGDTIGV----GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGIST  320 (398)
Q Consensus       245 ~~~~~l~~~a~~l~~~Gad~I~L~DT~G~----~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~  320 (398)
                      .+++++.+.++.+.+.|+.+|.|. + |.    ..++.+.++++.+++.+|.+.+++.     -+...-...-.++|++.
T Consensus       103 Ls~eEI~~~a~~~~~~Gv~~i~lv-g-Ge~p~~~~~e~l~eii~~Ik~~~p~i~Iei~-----~lt~e~~~~Lk~aGv~r  175 (366)
T TIGR02351       103 LNEEEIEREIEAIKKSGFKEILLV-T-GESEKAAGVEYIAEAIKLAREYFSSLAIEVQ-----PLNEEEYKKLVEAGLDG  175 (366)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEe-e-CCCCCCCCHHHHHHHHHHHHHhCCccccccc-----cCCHHHHHHHHHcCCCE
Confidence            478899999999999999999987 3 43    3356788899999888875433321     13333333334699998


Q ss_pred             EeeccccC
Q 015894          321 VDSSVSGL  328 (398)
Q Consensus       321 VD~Sv~Gl  328 (398)
                      +...+-.+
T Consensus       176 ~~i~lET~  183 (366)
T TIGR02351       176 VTVYQETY  183 (366)
T ss_pred             EEEEeecC
Confidence            88777665

Members this protein family are the ThiH protein of thiamine biosynthesis, a homolog of the BioB protein of biotin biosynthesis. Genes for the this protein generally are found in operons with other thiamin biosynthesis genes.

>TIGR03849 arch_ComA phosphosulfolactate synthase

Probab=88.74  E-value=3.5  Score=39.75  Aligned_cols=107  Identities=13%  Similarity=0.101  Sum_probs=68.4

Q ss_pred             HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894          178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL  257 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l  257 (398)
                      ++.+.+.|.+.|-|....-+.        +.    +.-.+.|+.+++.|+.|-..+---+..+ ....+++.+.+.++..
T Consensus        77 l~~~k~lGf~~IEiS~G~~~i--------~~----~~~~rlI~~~~~~g~~v~~EvG~K~~~~-~~~~~~~~~i~~~~~~  143 (237)
T TIGR03849        77 LNECDELGFEAVEISDGSMEI--------SL----EERCNLIERAKDNGFMVLSEVGKKSPEK-DSELTPDDRIKLINKD  143 (237)
T ss_pred             HHHHHHcCCCEEEEcCCccCC--------CH----HHHHHHHHHHHhCCCeEeccccccCCcc-cccCCHHHHHHHHHHH
Confidence            457888999999997653322        22    3334778999999998854333222111 2247888999999999


Q ss_pred             HhCCCCEE-----------EEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCC
Q 015894          258 YDMGCSEI-----------SLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHD  301 (398)
Q Consensus       258 ~~~Gad~I-----------~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hn  301 (398)
                      .++||+.|           .|.|..|......+..+++    ++|...+-|-.=+
T Consensus       144 LeAGA~~ViiEarEsg~~~Gi~~~~g~~r~d~v~~i~~----~l~~eklifEAp~  194 (237)
T TIGR03849       144 LEAGADYVIIEGRESGKNIGLFDEKGNVKEDELDVLAE----NVDINKVIFEAPQ  194 (237)
T ss_pred             HHCCCcEEEEeehhcCCCcceeCCCCCCchHHHHHHHh----hCChhcEEEECCC
Confidence            99999765           4555566666655555554    4554345554443

This model finds the ComA (Coenzyme M biosynthesis A) protein, phosphosulfolactate synthase, in methanogenic archaea. The ComABC pathway is one of at least two pathways to the intermediate sulfopyruvate. Coenzyme M occurs rarely and sporadically outside of the archaea, as for expoxide metabolism in Xanthobacter autotrophicus Py2, but candidate phosphosulfolactate synthases from that and other species occur fall below the cutoff and outside the scope of this model. This model deliberately is narrower in scope than pfam02679.

>PF04476 DUF556: Protein of unknown function (DUF556); InterPro: IPR007565 The proteins in this entry are functionally uncharacterised

Probab=88.70  E-value=9.2  Score=36.86  Aligned_cols=145  Identities=15%  Similarity=0.145  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHH----HHHHhc-cCCcEEEEeC-C------Hh--h-HHHHH
Q 015894          118 AVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVM----AAIQNV-EGARFPVLTP-N------LK--G-FEAAV  182 (398)
Q Consensus       118 ~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~----~~i~~~-~~~~l~~l~~-n------~~--~-ie~a~  182 (398)
                      +.....-+.....+|+++|-+|++....+    ...-+.+    +.++.. ++.++.+... .      ..  + .+.+.
T Consensus        66 p~~~~~aa~~~a~~GvdyvKvGl~g~~~~----~~a~e~l~~v~~av~~~~~~~~vVAv~yAD~~r~~~~~p~~l~~~a~  141 (235)
T PF04476_consen   66 PGTASLAALGAAATGVDYVKVGLFGCKDY----DEAIEALEAVVRAVKDFDPDKKVVAVGYADAQRVGSISPLDLPEIAA  141 (235)
T ss_pred             chHHHHHHHHHHhcCCCEEEEecCCCCCH----HHHHHHHHHHHHHHhhhCCCcEEEEEEecchhhhcCCCHHHHHHHHH
Confidence            34444445556678999999999854321    1111222    222322 3445544332 1      11  2 35678


Q ss_pred             HcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCC
Q 015894          183 AAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGC  262 (398)
Q Consensus       183 ~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Ga  262 (398)
                      ++|.+.+.+     |...|.+-+..---..+.+.++++.++++|+.+-  +        ++-...+.+    ..+...++
T Consensus       142 ~aG~~gvMl-----DTa~Kdg~~L~d~~~~~~L~~Fv~~ar~~gL~~a--L--------AGSL~~~di----~~L~~l~p  202 (235)
T PF04476_consen  142 EAGFDGVML-----DTADKDGGSLFDHLSEEELAEFVAQARAHGLMCA--L--------AGSLRFEDI----PRLKRLGP  202 (235)
T ss_pred             HcCCCEEEE-----ecccCCCCchhhcCCHHHHHHHHHHHHHccchhh--c--------cccCChhHH----HHHHhcCC
Confidence            899988776     2222332221111235667789999999999764  2        233333443    34556888


Q ss_pred             CEEEE----c---c-CcCcCCHHHHHHHHHH
Q 015894          263 SEISL----G---D-TIGVGTPGTVIPMLEA  285 (398)
Q Consensus       263 d~I~L----~---D-T~G~~~P~~v~~lv~~  285 (398)
                      |.+.+    |   | +.|.+.|+.|..+-+.
T Consensus       203 D~lGfRGAvC~ggdR~~G~id~~~V~~lr~~  233 (235)
T PF04476_consen  203 DILGFRGAVCGGGDRRAGRIDPELVAALRAL  233 (235)
T ss_pred             CEEEechhhCCCCCcCccccCHHHHHHHHHh
Confidence            87643    3   4 3589999988886554

>PRK13758 anaerobic sulfatase-maturase; Provisional

Probab=88.70  E-value=18  Score=36.50  Aligned_cols=161  Identities=12%  Similarity=0.048  Sum_probs=89.5

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCC---HHHHHHHHHhcc--CCcE-EEEeCC-----HhhHHHHHH
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLAD---AKDVMAAIQNVE--GARF-PVLTPN-----LKGFEAAVA  183 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D---~~~v~~~i~~~~--~~~l-~~l~~n-----~~~ie~a~~  183 (398)
                      .++.+.-.++++.+.+.+.....+.+...   .|-+..   ..++++.+++..  +..+ ..+..|     .+-++...+
T Consensus        38 ~m~~~~~~~~i~~~~~~~~~~~~i~~~GG---EPll~~~~~~~~~~~~~~~~~~~~~~~~~~i~TNG~ll~~~~~~~l~~  114 (370)
T PRK13758         38 IMRDEVLESMVKRVLNEAEGHCSFAFQGG---EPTLAGLEFFEELMELQRKHNYKNLKIYNSLQTNGTLIDESWAKFLSE  114 (370)
T ss_pred             CCCHHHHHHHHHHHHhccCCceEEEEECC---ccccCChHHHHHHHHHHHHhccCCCeEEEEEEecCEecCHHHHHHHHH
Confidence            46777777777766554434445554322   233321   235566666432  3332 234333     234556667


Q ss_pred             cCCCEEEEeccCc-hHHHhhhcCCC--HHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC
Q 015894          184 AGAKEVAIFASAS-ESFSKSNINCT--IEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM  260 (398)
Q Consensus       184 ~Gv~~v~i~~~~S-d~~~~~~~~~s--~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~  260 (398)
                      .++ .|.|.+... +.|  ..++..  ....++.+.+.++.+++.|+.+.+...  +     ++.+.+++.++++.+.+.
T Consensus       115 ~~~-~v~iSlDg~~~~h--d~~R~~~~g~~~f~~v~~~i~~l~~~~~~~~i~~~--v-----~~~n~~~l~~i~~~~~~~  184 (370)
T PRK13758        115 NKF-LVGLSMDGPKEIH--NLNRKDCCGLDTFSKVERAAELFKKYKVEFNILCV--V-----TSNTARHVNKIYKYFKEK  184 (370)
T ss_pred             cCc-eEEEeecCCHHHh--ccccCCCCCCccHHHHHHHHHHHHHhCCCceEEEE--e-----ccccccCHHHHHHHHHHc
Confidence            775 677755443 333  122221  235677788888888888887654332  2     123455677788888889


Q ss_pred             CCCEEEEc---cCcC--------cCCHHHHHHHHHHHHh
Q 015894          261 GCSEISLG---DTIG--------VGTPGTVIPMLEAVLD  288 (398)
Q Consensus       261 Gad~I~L~---DT~G--------~~~P~~v~~lv~~l~~  288 (398)
                      |++.+.+.   +..|        .++|.+..+++..+.+
T Consensus       185 g~~~~~~~~~~~p~~~~~~~~~~~l~~~~~~~~~~~l~~  223 (370)
T PRK13758        185 DFKFLQFINCLDPLYEEKGKYNYSLKPKDYTKFLKNLFD  223 (370)
T ss_pred             CCCeEeeeeccCccccccCCCcCccCHHHHHHHHHHHHH
Confidence            99877542   2222        3567777776666544

>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase

Probab=88.66  E-value=4.1  Score=40.19  Aligned_cols=81  Identities=11%  Similarity=0.021  Sum_probs=64.6

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcCc---CCHHHHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHHHHHhCC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGV---GTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILASLQMGI  318 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANalaAl~aGa  318 (398)
                      +..|.+-+.++++.+.+.|++.|.+.-|+|-   ++.++-.++++.+++... ..+|-+|.=.+..-++..+..|.++||
T Consensus        21 g~iD~~~l~~li~~l~~~Gv~gi~v~GstGE~~~Lt~eEr~~v~~~~~~~~~g~~pvi~gv~~~t~~ai~~a~~a~~~Ga  100 (296)
T TIGR03249        21 GSFDEAAYRENIEWLLGYGLEALFAAGGTGEFFSLTPAEYEQVVEIAVSTAKGKVPVYTGVGGNTSDAIEIARLAEKAGA  100 (296)
T ss_pred             CCcCHHHHHHHHHHHHhcCCCEEEECCCCcCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCccHHHHHHHHHHHHHhCC
Confidence            5789999999999999999999999999995   456777777777777654 356666654457778888889999999


Q ss_pred             CEEee
Q 015894          319 STVDS  323 (398)
Q Consensus       319 ~~VD~  323 (398)
                      +.+=.
T Consensus       101 dav~~  105 (296)
T TIGR03249       101 DGYLL  105 (296)
T ss_pred             CEEEE
Confidence            97733

5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.

>PRK07107 inosine 5-monophosphate dehydrogenase; Validated

Probab=88.60  E-value=10  Score=40.50  Aligned_cols=139  Identities=19%  Similarity=0.134  Sum_probs=75.9

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh-ccCCcEEEEe---CCHhhHHHHHHcCCCE
Q 015894          113 KNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN-VEGARFPVLT---PNLKGFEAAVAAGAKE  188 (398)
Q Consensus       113 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~---~n~~~ie~a~~~Gv~~  188 (398)
                      +....+++-.+.++.|.++|++.|++..  ++.+-   .-.-+.++.++. .++ .+.+.+   -+.++.+.++++|+|.
T Consensus       235 ~~av~~~~~~~ra~~Lv~aGvd~i~vd~--a~g~~---~~~~~~i~~ir~~~~~-~~~V~aGnV~t~e~a~~li~aGAd~  308 (502)
T PRK07107        235 GAGINTRDYAERVPALVEAGADVLCIDS--SEGYS---EWQKRTLDWIREKYGD-SVKVGAGNVVDREGFRYLAEAGADF  308 (502)
T ss_pred             eeccChhhHHHHHHHHHHhCCCeEeecC--ccccc---HHHHHHHHHHHHhCCC-CceEEeccccCHHHHHHHHHcCCCE
Confidence            3445556677899999999999999972  32110   001123334443 332 233333   3567899999999999


Q ss_pred             EEEeccCchHHHhh-hc--CCCHHHHHHHHHHHH-HHHHhCCCcEEEEEeeeecCCCCC-CCCHHHHHHHHHHHHhCCCC
Q 015894          189 VAIFASASESFSKS-NI--NCTIEDSLIRYRDVA-LAARELSIPVRGYLSCVVGCPVEG-MVPPSKVAYVSKQLYDMGCS  263 (398)
Q Consensus       189 v~i~~~~Sd~~~~~-~~--~~s~~~~l~~~~~~v-~~ak~~G~~v~~~l~~~fg~~~~~-r~~~~~l~~~a~~l~~~Gad  263 (398)
                      |.+-.+.--+-... ++  +...-.++..+.+++ +++++.|..+.  +..     |.+ |+.    -++++.+ ++|||
T Consensus       309 I~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~--via-----dgGir~~----gdi~KAl-a~GA~  376 (502)
T PRK07107        309 VKVGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIP--ICS-----DGGIVYD----YHMTLAL-AMGAD  376 (502)
T ss_pred             EEECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcce--EEE-----cCCCCch----hHHHHHH-HcCCC
Confidence            98854433111111 22  333333444444444 24556685432  221     333 332    3456544 49999


Q ss_pred             EEEEcc
Q 015894          264 EISLGD  269 (398)
Q Consensus       264 ~I~L~D  269 (398)
                      .+-+..
T Consensus       377 ~vm~G~  382 (502)
T PRK07107        377 FIMLGR  382 (502)
T ss_pred             eeeeCh
Confidence            887664

>TIGR01064 pyruv_kin pyruvate kinase

Probab=88.59  E-value=36  Score=36.11  Aligned_cols=245  Identities=18%  Similarity=0.132  Sum_probs=138.1

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc--cCCcEEEEeCCHhhHHHH---HHcCCCEEE
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV--EGARFPVLTPNLKGFEAA---VAAGAKEVA  190 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~--~~~~l~~l~~n~~~ie~a---~~~Gv~~v~  190 (398)
                      ++.+++..| +.+.+.|++.|-+.+--++      .|...+.+.+...  .++.+.+..-+..+++.+   ++. .|  .
T Consensus       169 ltekD~~Dl-~~~~~~~~d~I~lskV~sa------~dv~~l~~~l~~~~~~~~~Iia~IEt~~av~nl~eI~~~-~d--g  238 (473)
T TIGR01064       169 LSEKDKKDL-KFGVEQGVDMVAASFVRTA------EDVLEVREVLGEKGAKDVKIIAKIENQEGVDNIDEIAEA-SD--G  238 (473)
T ss_pred             CCHHHHHHH-HHHHHCCCCEEEECCCCCH------HHHHHHHHHHHhcCCCCceEEEEECCHHHHHhHHHHHhh-CC--c
Confidence            566666554 5667899999877653332      2334444444432  255666666666555433   222 45  6


Q ss_pred             EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEE---eeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 015894          191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYL---SCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL  267 (398)
Q Consensus       191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l---~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L  267 (398)
                      +++...|.-...  +  .++......+++..|+++|+.+-+.-   .-+...|.-+|.+..++..    +...|+|.|.+
T Consensus       239 i~iG~gDL~~~l--g--~~~l~~~~~~ii~aaraag~pvi~atqmLeSM~~~p~PTRAe~~dv~~----~v~~G~d~v~l  310 (473)
T TIGR01064       239 IMVARGDLGVEI--P--AEEVPIAQKKMIRKCNRAGKPVITATQMLDSMIKNPRPTRAEVSDVAN----AILDGTDAVML  310 (473)
T ss_pred             EEEchHHHHhhc--C--cHHHHHHHHHHHHHHHHcCCCEEEEChhhhhhhcCCCCCcccHHHHHH----HHHcCCCEEEE
Confidence            666666765443  3  25666667889999999999875211   0012356666766655443    45689998877


Q ss_pred             -ccCcCcCCHHHHHHHHHHHHhhCCC-CeEE--E-Ee-------C-CccchHHHHHHHHHHhCCC-EEeeccccCCC---
Q 015894          268 -GDTIGVGTPGTVIPMLEAVLDAVPV-DKLA--V-HF-------H-DTYGQALSNILASLQMGIS-TVDSSVSGLGG---  330 (398)
Q Consensus       268 -~DT~G~~~P~~v~~lv~~l~~~~p~-~~l~--~-H~-------H-nd~GlA~ANalaAl~aGa~-~VD~Sv~GlGe---  330 (398)
                       .||.=.-.|.+....+..+..+.-. ....  + |.       | -.-.+|.+....|-..+++ +|--|-.|--.   
T Consensus       311 s~eta~G~yP~~~v~~m~~I~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~ia~~a~~~a~~~~akaIVv~T~SG~TA~~v  390 (473)
T TIGR01064       311 SGETAKGKYPVEAVKMMAKIAKEAEKALAYLTNFNDRKNSDPKPSTITEAIALSAVEAAEKLDAKAIVVLTESGRTARLL  390 (473)
T ss_pred             cchhhcCCCHHHHHHHHHHHHHHHHhccchhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCEEEEEcCChHHHHHH
Confidence             5677777898888888777764321 0000  0 00       1 1134566666777788887 56666665432   


Q ss_pred             ------CCCCCCCCCCccHHHHHHHHHh-CCCCC------ccChHHHHHHHHHHHHHhCCCCCCC
Q 015894          331 ------CPYAKGASGNVATEDVVYMLNG-LGVRT------NVDIRKLMIAGDFICKHLGRTSGSK  382 (398)
Q Consensus       331 ------cp~a~graGNa~lE~vv~~L~~-~Gi~t------~iDl~~L~~~~~~v~~~~g~~~~~~  382 (398)
                            ||   - -+-.+-+.+...|.- .|+.+      .-|.+.+.+.+.......|.--+..
T Consensus       391 Sr~rp~~P---I-iAvT~~~~v~R~L~L~wGV~Pil~~~~~~~~~~~i~~a~~~l~~~gl~~~GD  451 (473)
T TIGR01064       391 SKYRPNAP---I-IAVTPNERVARQLALYWGVFPFLVDEEPSDTEARVNKALELLKEKGILKKGD  451 (473)
T ss_pred             HhhCCCCC---E-EEEcCCHHHHHHhhccCCcEEEEeCCCCCCHHHHHHHHHHHHHHcCCCCCCC
Confidence                  22   0 123344777666664 46632      1244554444433344455544444

This enzyme is a homotetramer. Some forms are active only in the presence of fructose-1,6-bisphosphate or similar phosphorylated sugars.

>TIGR01431 adm_rel adenosine deaminase-related growth factor

Probab=88.55  E-value=20  Score=38.12  Aligned_cols=159  Identities=14%  Similarity=0.045  Sum_probs=95.0

Q ss_pred             HHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894          179 EAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSI-PVRGYLSCVVGCPVEGMVPPSKVAYVSKQL  257 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~-~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l  257 (398)
                      +.+.+-|+..+-+..+....+...+...+.++.++.+.+.++.+++.+- .+.+.+.++.   . -..+++...+.++.+
T Consensus       204 ~d~~~DgV~Y~ElR~~p~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~fi~~rlI~~~---~-R~~~~~~~~~~~~~a  279 (479)
T TIGR01431       204 EEFYADNVQYLELRSTLFILYELEGTSHDEEDSVRIYKEVTEKFMAEHPDFIGSKLIYSP---L-RNKDKEELDNYIKVA  279 (479)
T ss_pred             HHHHHcCCEEEEEEecCchHhhcCCCCCCHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEc---c-CCCCHHHHHHHHHHH
Confidence            3455678877666655444454555666889999999999988876542 1333344321   1 124667666666666


Q ss_pred             HhC---CCCEEEEccCcCcC----CHHHHHHHHHHHHhhCCCCeEEEEeCCccch---HHHHHHHHHHhCCCEEeecccc
Q 015894          258 YDM---GCSEISLGDTIGVG----TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQ---ALSNILASLQMGISTVDSSVSG  327 (398)
Q Consensus       258 ~~~---Gad~I~L~DT~G~~----~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~Gl---A~ANalaAl~aGa~~VD~Sv~G  327 (398)
                      .++   -.+.|.=-|-+|.=    .|....+.+..+++. .++++.+|+=.+.+.   .-.|...|+..|+++|.=.+. 
T Consensus       280 ~~~k~~~p~~vvGfDL~G~E~~g~pl~~f~~~~~~~~~~-~gl~~t~HAGE~~~~g~~~d~nl~dAIlLg~~RIGHG~~-  357 (479)
T TIGR01431       280 MELKEKYPDFVAGFDLVGQEDKGRSLLDFIDALLGPSDK-EKLPYFFHAGETNWQGTTVDENLIDALLLNTTRIGHGFA-  357 (479)
T ss_pred             HHHHhhCCCeEEEEeccCCCCCCCCHHHHHHHHHHHHHh-CCCCEEEecCCcCCCCCCchhHHHHHHHcCCccccCccc-
Confidence            553   23344444777643    234444444433332 356799999877643   348999999999999854333 


Q ss_pred             CCCCCCCCCCCCCccHHHHHHHHHhCCC
Q 015894          328 LGGCPYAKGASGNVATEDVVYMLNGLGV  355 (398)
Q Consensus       328 lGecp~a~graGNa~lE~vv~~L~~~Gi  355 (398)
                                  .+.-.+++..+++.+|
T Consensus       358 ------------l~~~P~l~~~vke~~I  373 (479)
T TIGR01431       358 ------------LVKHPLVLQMLKERNI  373 (479)
T ss_pred             ------------ccCCHHHHHHHHHhCC
Confidence                        1222456666766555

Members of this family have been described as secreted proteins with growth factor activity and regions of adenosine deaminase homology in insects, mollusks, and vertebrates.

>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain

Probab=88.53  E-value=6.8  Score=38.21  Aligned_cols=38  Identities=21%  Similarity=0.358  Sum_probs=31.5

Q ss_pred             CccccCccCCCCCCCccchhhhhhhccCCCCccEEEeCCCcccCC
Q 015894           66 NGYLSKAHYSSSCTDNSTKDLTSKLLGRVPGFVKIVEVGPRDGLQ  110 (398)
Q Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~I~i~D~TLRDG~Q  110 (398)
                      +.|..+++|+.+    +...++..|...   .|.++|+++..+.+
T Consensus         9 G~q~~~~~f~~~----~~~~ia~~L~~~---GVd~IEvG~~~~~~   46 (266)
T cd07944           9 GGYVNNWDFGDE----FVKAIYRALAAA---GIDYVEIGYRSSPE   46 (266)
T ss_pred             CccccCccCCHH----HHHHHHHHHHHC---CCCEEEeecCCCCc
Confidence            557889999999    888899888865   68999999887754

This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t

>PF13714 PEP_mutase: Phosphoenolpyruvate phosphomutase; PDB: 1ZLP_A 3EOO_C 1UJQ_D 1O5Q_A 2DUA_A 2HJP_A 2HRW_A 2QIW_A 3KZ2_B 3IH1_B

Probab=88.48  E-value=4.9  Score=38.69  Aligned_cols=137  Identities=23%  Similarity=0.240  Sum_probs=80.0

Q ss_pred             hhHHHHHHcCCCEEEEe-ccCchHHHhhh-cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHH
Q 015894          176 KGFEAAVAAGAKEVAIF-ASASESFSKSN-INCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYV  253 (398)
Q Consensus       176 ~~ie~a~~~Gv~~v~i~-~~~Sd~~~~~~-~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~  253 (398)
                      -..+.+..+|.+-+.+. .+++-.+-..- --.|.+|.++.++++++..   .++|.+.+-.-|      --++..+.+.
T Consensus        20 ~SAr~~e~~Gf~ai~~sg~~~a~s~G~pD~~~lt~~e~~~~~~~I~~~~---~iPv~vD~d~Gy------G~~~~~v~~t   90 (238)
T PF13714_consen   20 LSARLAERAGFDAIATSGAGVAASLGYPDGGLLTLTEMLAAVRRIARAV---SIPVIVDADTGY------GNDPENVART   90 (238)
T ss_dssp             HHHHHHHHTT-SEEEEHHHHHHHHTTS-SSS-S-HHHHHHHHHHHHHHS---SSEEEEE-TTTS------SSSHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEechHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhh---cCcEEEEccccc------CchhHHHHHH
Confidence            34455566788876652 11111110000 1236778887776666654   677765443211      1248999999


Q ss_pred             HHHHHhCCCCEEEEccC-cC-----cCCHHHHHHHHHHHHhhC--CCCeEEEEeC------CccchHHHHHHHHHHhCCC
Q 015894          254 SKQLYDMGCSEISLGDT-IG-----VGTPGTVIPMLEAVLDAV--PVDKLAVHFH------DTYGQALSNILASLQMGIS  319 (398)
Q Consensus       254 a~~l~~~Gad~I~L~DT-~G-----~~~P~~v~~lv~~l~~~~--p~~~l~~H~H------nd~GlA~ANalaAl~aGa~  319 (398)
                      ++.+.++|+..|.|-|. .|     +..++++.+.|++.++..  ++.-|-.-+=      ..+--|+.-+.+-.+||||
T Consensus        91 v~~~~~aG~agi~IEDq~~~~~~~~l~~~ee~~~kI~Aa~~a~~~~~~~I~ARTDa~~~~~~~~deaI~R~~aY~eAGAD  170 (238)
T PF13714_consen   91 VRELERAGAAGINIEDQRCGHGGKQLVSPEEMVAKIRAAVDARRDPDFVIIARTDAFLRAEEGLDEAIERAKAYAEAGAD  170 (238)
T ss_dssp             HHHHHHCT-SEEEEESBSTTTSTT-B--HHHHHHHHHHHHHHHSSTTSEEEEEECHHCHHHHHHHHHHHHHHHHHHTT-S
T ss_pred             HHHHHHcCCcEEEeeccccCCCCCceeCHHHHHHHHHHHHHhccCCeEEEEEeccccccCCCCHHHHHHHHHHHHHcCCC
Confidence            99999999999999999 34     456788888888888765  3322222221      1224567778888899999


Q ss_pred             EE
Q 015894          320 TV  321 (398)
Q Consensus       320 ~V  321 (398)
                      .|
T Consensus       171 ~i  172 (238)
T PF13714_consen  171 MI  172 (238)
T ss_dssp             EE
T ss_pred             EE
Confidence            66

...

>TIGR00674 dapA dihydrodipicolinate synthase

Probab=88.48  E-value=4.2  Score=39.80  Aligned_cols=83  Identities=16%  Similarity=0.085  Sum_probs=66.1

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcCcC---CHHHHHHHHHHHHhhCC-CCeEEEEe-CCccchHHHHHHHHHHhC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGVG---TPGTVIPMLEAVLDAVP-VDKLAVHF-HDTYGQALSNILASLQMG  317 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~---~P~~v~~lv~~l~~~~p-~~~l~~H~-Hnd~GlA~ANalaAl~aG  317 (398)
                      +..|.+.+.++++.+.+.|++.|.+.-|+|-.   +.++-.++++.+.+... .+++-+|. +++..-++..+..|-++|
T Consensus        14 g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~G   93 (285)
T TIGR00674        14 GSVDFAALEKLIDFQIENGTDAIVVVGTTGESPTLSHEEHKKVIEFVVDLVNGRVPVIAGTGSNATEEAISLTKFAEDVG   93 (285)
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCccHHHHHHHHHHHHHcC
Confidence            57889999999999999999999999998854   55666677777776653 35666665 567888999999999999


Q ss_pred             CCEEeecc
Q 015894          318 ISTVDSSV  325 (398)
Q Consensus       318 a~~VD~Sv  325 (398)
                      |+.|=..-
T Consensus        94 ad~v~v~p  101 (285)
T TIGR00674        94 ADGFLVVT  101 (285)
T ss_pred             CCEEEEcC
Confidence            99876653

Dihydrodipicolinate synthase is a homotetrameric enzyme of lysine biosynthesis. E. coli has several paralogs closely related to dihydrodipicoline synthase (DapA), as well as the more distant N-acetylneuraminate lyase. In Pyrococcus horikoshii, the bidirectional best hit with E. coli is to an uncharacterized paralog of DapA, not DapA itself, and it is omitted from the seed. The putative members from the Chlamydias (pathogens with a parasitic metabolism) are easily the most divergent members of the multiple alignment.

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=88.44  E-value=9.7  Score=37.39  Aligned_cols=91  Identities=15%  Similarity=0.146  Sum_probs=59.0

Q ss_pred             HhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCC--CCEEEEc----cCc--C---cCCHHHHHHHHHHHHhhCC
Q 015894          223 RELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMG--CSEISLG----DTI--G---VGTPGTVIPMLEAVLDAVP  291 (398)
Q Consensus       223 k~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~G--ad~I~L~----DT~--G---~~~P~~v~~lv~~l~~~~p  291 (398)
                      ++.+..+.+.|+   |      .+++.+.+.++.+.+++  +|.|.|-    -+.  |   ...|+.+.++++++++...
T Consensus        87 ~~~~~pl~~qi~---g------~~~~~~~~~a~~~~~~~~~~d~ielN~~cP~~~~~g~~l~~~~~~~~eiv~~vr~~~~  157 (300)
T TIGR01037        87 EEFPTPLIASVY---G------SSVEEFAEVAEKLEKAPPYVDAYELNLSCPHVKGGGIAIGQDPELSADVVKAVKDKTD  157 (300)
T ss_pred             ccCCCcEEEEee---c------CCHHHHHHHHHHHHhccCccCEEEEECCCCCCCCCccccccCHHHHHHHHHHHHHhcC
Confidence            445555555453   1      35788888888888763  7776552    111  1   2478999999999998763


Q ss_pred             CCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          292 VDKLAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       292 ~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                       .||.+-.-.+..-...-+..+.++|++.|.+
T Consensus       158 -~pv~vKi~~~~~~~~~~a~~l~~~G~d~i~v  188 (300)
T TIGR01037       158 -VPVFAKLSPNVTDITEIAKAAEEAGADGLTL  188 (300)
T ss_pred             -CCEEEECCCChhhHHHHHHHHHHcCCCEEEE
Confidence             4677766434333445555667899998865

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=88.42  E-value=12  Score=34.97  Aligned_cols=133  Identities=17%  Similarity=0.171  Sum_probs=72.0

Q ss_pred             HHHHHHcCCCEEEEeccC-chHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 015894          178 FEAAVAAGAKEVAIFASA-SESFSKSNINCTIEDSLIRYRDVALAAREL-SIPVRGYLSCVVGCPVEGMVPPSKVAYVSK  255 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~-Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~  255 (398)
                      .+.+.++|+|.|.+-++. +....+..+|.+.++-.+.+.++++..++. ++.+.+-+...+       .+.+...++++
T Consensus        73 a~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~~~v~vk~r~~~-------~~~~~~~~~~~  145 (231)
T cd02801          73 AKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVPIPVTVKIRLGW-------DDEEETLELAK  145 (231)
T ss_pred             HHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcCCCEEEEEeecc-------CCchHHHHHHH
Confidence            345567899988774432 122333444555455556666677776654 445554343211       11157888999


Q ss_pred             HHHhCCCCEEEEccCcC---cCCHHHHHHHHHHHHhhCCCCeEEEEeCCccch-HHHHHHHHHHh-CCCEEee
Q 015894          256 QLYDMGCSEISLGDTIG---VGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQ-ALSNILASLQM-GISTVDS  323 (398)
Q Consensus       256 ~l~~~Gad~I~L~DT~G---~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~Gl-A~ANalaAl~a-Ga~~VD~  323 (398)
                      .+.++|++.|.+-+-..   ...|. -.+.++.+++.. .+||..-+    |. ....+..+++. ||+.|-.
T Consensus       146 ~l~~~Gvd~i~v~~~~~~~~~~~~~-~~~~~~~i~~~~-~ipvi~~G----gi~~~~d~~~~l~~~gad~V~i  212 (231)
T cd02801         146 ALEDAGASALTVHGRTREQRYSGPA-DWDYIAEIKEAV-SIPVIANG----DIFSLEDALRCLEQTGVDGVMI  212 (231)
T ss_pred             HHHHhCCCEEEECCCCHHHcCCCCC-CHHHHHHHHhCC-CCeEEEeC----CCCCHHHHHHHHHhcCCCEEEE
Confidence            99999999998865432   11222 234556666543 23444422    21 13344555555 5665543

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>PRK11613 folP dihydropteroate synthase; Provisional

Probab=88.36  E-value=24  Score=34.90  Aligned_cols=126  Identities=17%  Similarity=0.217  Sum_probs=74.3

Q ss_pred             HHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894          179 EAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAREL-SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL  257 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l  257 (398)
                      +..++.|++.|.|-.-.+...   .-..+.++-++++..+++..++. +..+.      +   |.  +.+    ++++++
T Consensus        45 ~~~~~~GAdIIDIGgeSTrPg---~~~v~~eeE~~Rv~pvI~~l~~~~~~~IS------I---DT--~~~----~va~~A  106 (282)
T PRK11613         45 NLMINAGATIIDVGGESTRPG---AAEVSVEEELDRVIPVVEAIAQRFEVWIS------V---DT--SKP----EVIRES  106 (282)
T ss_pred             HHHHHCCCcEEEECCCCCCCC---CCCCCHHHHHHHHHHHHHHHHhcCCCeEE------E---EC--CCH----HHHHHH
Confidence            344678999999964322111   11357888899999999988853 54432      2   32  223    467777


Q ss_pred             HhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccc-----------------hHHHHHHHHHHhCCC-
Q 015894          258 YDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYG-----------------QALSNILASLQMGIS-  319 (398)
Q Consensus       258 ~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~G-----------------lA~ANalaAl~aGa~-  319 (398)
                      .++|++.|  -|..|.-.| .+.+.   +++ +...-+-.|.+.+..                 ......-.|..+|+. 
T Consensus       107 L~~GadiI--NDI~g~~d~-~~~~~---~a~-~~~~vVlmh~~g~p~~~~~~~~y~dv~~~v~~~l~~~i~~a~~~GI~~  179 (282)
T PRK11613        107 AKAGAHII--NDIRSLSEP-GALEA---AAE-TGLPVCLMHMQGNPKTMQEAPKYDDVFAEVNRYFIEQIARCEAAGIAK  179 (282)
T ss_pred             HHcCCCEE--EECCCCCCH-HHHHH---HHH-cCCCEEEEcCCCCCCccccCCCcccHHHHHHHHHHHHHHHHHHcCCCh
Confidence            78899975  566676555 33333   333 322235667542111                 122445567889997 


Q ss_pred             ---EEeeccccCCC
Q 015894          320 ---TVDSSVSGLGG  330 (398)
Q Consensus       320 ---~VD~Sv~GlGe  330 (398)
                         ++|-. .|+|.
T Consensus       180 ~~IilDPG-iGF~k  192 (282)
T PRK11613        180 EKLLLDPG-FGFGK  192 (282)
T ss_pred             hhEEEeCC-CCcCC
Confidence               78995 35555

>PRK09240 thiH thiamine biosynthesis protein ThiH; Reviewed

Probab=88.36  E-value=8.5  Score=39.34  Aligned_cols=79  Identities=10%  Similarity=0.066  Sum_probs=50.8

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcc--CcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHH-HhCCCEE
Q 015894          245 VPPSKVAYVSKQLYDMGCSEISLGD--TIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASL-QMGISTV  321 (398)
Q Consensus       245 ~~~~~l~~~a~~l~~~Gad~I~L~D--T~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl-~aGa~~V  321 (398)
                      .+++.+.+.++.+.+.|+.+|.|.-  +.-...+..+.++++.+++.+|.  +.+|.   ..+ ..+-+..+ ++|++.+
T Consensus       104 ls~eEI~~~a~~~~~~Gv~~i~lvgGe~p~~~~~e~l~~~i~~Ik~~~p~--i~i~~---g~l-t~e~l~~Lk~aGv~r~  177 (371)
T PRK09240        104 LDEEEIEREMAAIKKLGFEHILLLTGEHEAKVGVDYIRRALPIAREYFSS--VSIEV---QPL-SEEEYAELVELGLDGV  177 (371)
T ss_pred             CCHHHHHHHHHHHHhCCCCEEEEeeCCCCCCCCHHHHHHHHHHHHHhCCC--ceecc---CCC-CHHHHHHHHHcCCCEE
Confidence            5778888888888888888887763  22223457788888888877774  22322   223 33333443 6888888


Q ss_pred             eeccccCC
Q 015894          322 DSSVSGLG  329 (398)
Q Consensus       322 D~Sv~GlG  329 (398)
                      +..+--+-
T Consensus       178 ~i~lET~~  185 (371)
T PRK09240        178 TVYQETYN  185 (371)
T ss_pred             EEEEecCC
Confidence            77766653

>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase

Probab=88.34  E-value=17  Score=35.78  Aligned_cols=39  Identities=8%  Similarity=-0.136  Sum_probs=20.8

Q ss_pred             HHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC
Q 015894          217 DVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM  260 (398)
Q Consensus       217 ~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~  260 (398)
                      +.++.|++.|....   +  ...|.-.+.+.+.+.+..+.+.++
T Consensus        90 ~~a~~a~~~Gadav---~--~~pP~y~~~s~~~i~~~f~~v~~a  128 (296)
T TIGR03249        90 EIARLAEKAGADGY---L--LLPPYLINGEQEGLYAHVEAVCES  128 (296)
T ss_pred             HHHHHHHHhCCCEE---E--ECCCCCCCCCHHHHHHHHHHHHhc
Confidence            44566677777643   1  113444445566666666655543

5-dehydro-4-deoxyglucarate dehydratase not only catalyzes the dehydration of the substrate (diol to ketone + water), but causes the decarboxylation of the intermediate product to yield 2-oxoglutarate semialdehyde (2,5-dioxopentanoate). The gene for the enzyme is usually observed in the vicinity of transporters and dehydratases handling D-galactarate and D-gluconate as well as aldehyde dehydrogenases which convert the product to alpha-ketoglutarate.

>cd00408 DHDPS-like Dihydrodipicolinate synthase family

Probab=88.31  E-value=26  Score=33.95  Aligned_cols=191  Identities=19%  Similarity=0.218  Sum_probs=108.8

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH---h-cc-CCcEEEEe--CCHh----hHHHHHH
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ---N-VE-GARFPVLT--PNLK----GFEAAVA  183 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~---~-~~-~~~l~~l~--~n~~----~ie~a~~  183 (398)
                      .++.+.-.++++.|.+.|++.|-+......  .+.+ +.+|..+.++   + .. ++.+.+-+  .+.+    -.+.+.+
T Consensus        14 ~iD~~~~~~~i~~l~~~Gv~gi~~~GstGE--~~~l-s~~Er~~l~~~~~~~~~~~~~vi~gv~~~~~~~~i~~a~~a~~   90 (281)
T cd00408          14 EVDLDALRRLVEFLIEAGVDGLVVLGTTGE--APTL-TDEERKEVIEAVVEAVAGRVPVIAGVGANSTREAIELARHAEE   90 (281)
T ss_pred             CcCHHHHHHHHHHHHHcCCCEEEECCCCcc--cccC-CHHHHHHHHHHHHHHhCCCCeEEEecCCccHHHHHHHHHHHHH
Confidence            578888899999999999999877432221  1112 2344444443   2 22 34433322  2332    2456678


Q ss_pred             cCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 015894          184 AGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCS  263 (398)
Q Consensus       184 ~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad  263 (398)
                      .|+|.+-+..+.   +    +..+.++.++.+.++++.   -++.+..|-.-.+   .....+++.+.+++    + ...
T Consensus        91 ~Gad~v~v~pP~---y----~~~~~~~~~~~~~~ia~~---~~~pi~iYn~P~~---tg~~l~~~~~~~L~----~-~~~  152 (281)
T cd00408          91 AGADGVLVVPPY---Y----NKPSQEGIVAHFKAVADA---SDLPVILYNIPGR---TGVDLSPETIARLA----E-HPN  152 (281)
T ss_pred             cCCCEEEECCCc---C----CCCCHHHHHHHHHHHHhc---CCCCEEEEECccc---cCCCCCHHHHHHHh----c-CCC
Confidence            999999886542   2    224667777776665553   4677765443211   02345677666654    3 457


Q ss_pred             EEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccH
Q 015894          264 EISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVAT  343 (398)
Q Consensus       264 ~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~l  343 (398)
                      .+.++||.  ....++.++++..    ++ .+.+-.=+|     ...+.++..|++   +++.|+          +|.--
T Consensus       153 v~giK~s~--~d~~~~~~~~~~~----~~-~~~v~~G~d-----~~~~~~l~~G~~---G~i~~~----------~n~~p  207 (281)
T cd00408         153 IVGIKDSS--GDLDRLTRLIALL----GP-DFAVLSGDD-----DLLLPALALGAD---GAISGA----------ANVAP  207 (281)
T ss_pred             EEEEEeCC--CCHHHHHHHHHhc----CC-CeEEEEcch-----HHHHHHHHcCCC---EEEehH----------HhhCH
Confidence            89999997  3566666655443    32 244432222     455667888984   444443          35555


Q ss_pred             HHHHHHHH
Q 015894          344 EDVVYMLN  351 (398)
Q Consensus       344 E~vv~~L~  351 (398)
                      +.++...+
T Consensus       208 ~~~~~~~~  215 (281)
T cd00408         208 KLAVALYE  215 (281)
T ss_pred             HHHHHHHH
Confidence            55555554

A member of the class I aldolases, which use an active-site lysine which stablilzes a reaction intermediate via Schiff base formation, and have TIM beta/alpha barrel fold. The dihydrodipicolinate synthase family comprises several pyruvate-dependent class I aldolases that use the same catalytic step to catalyze different reactions in different pathways and includes such proteins as N-acetylneuraminate lyase, MosA protein, 5-keto-4-deoxy-glucarate dehydratase, trans-o-hydroxybenzylidenepyruvate hydratase-aldolase, trans-2'-carboxybenzalpyruvate hydratase-aldolase, and 2-keto-3-deoxy- gluconate aldolase. The family is also referred to as the N-acetylneuraminate lyase (NAL) family.

>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=88.27  E-value=29  Score=36.15  Aligned_cols=144  Identities=15%  Similarity=0.141  Sum_probs=82.7

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCc---ccCCCCHHHHHHHHHhccCCc-E--EEEeCC---HhhHHHHHHcC
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKW---VPQLADAKDVMAAIQNVEGAR-F--PVLTPN---LKGFEAAVAAG  185 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~---~p~~~D~~~v~~~i~~~~~~~-l--~~l~~n---~~~ie~a~~~G  185 (398)
                      ..+.++.++=++.|.+.|+..|.+....-..|   .....+..++++.+..+++.. +  ...-+.   .+-++...+.|
T Consensus       168 sr~~e~Iv~Ei~~l~~~g~kei~l~~~n~~~yg~~~~~~~~l~~Ll~~~~~~~~~~~~~~~~~~p~~~~~ell~~l~~~~  247 (434)
T PRK14330        168 SRPMEDILEEVEKLAKQGYREVTFLGQNVDAYGKDLKDGSSLAKLLEEASKIEGIERIWFLTSYPTDFSDELIEVIANSP  247 (434)
T ss_pred             cCCHHHHHHHHHHHHHCCCcEEEEEEecccccccCCCCCccHHHHHHHHHhcCCceEEEEecCChhhcCHHHHHHHhcCC
Confidence            46788888888888888999876642100001   000112344555444444432 1  111121   23355556666


Q ss_pred             --CCEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC
Q 015894          186 --AKEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM  260 (398)
Q Consensus       186 --v~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~  260 (398)
                        ...+++-+ +.|+--++ .+|+..  ..+.+.++++.+++.  |+.+.++++  +|.|.+   +.+.+.+.++.+.+.
T Consensus       248 ~~~~~l~iglQSgsd~vLk-~M~R~~--~~~~~~~~i~~lr~~~~~i~i~~d~I--vGfPgE---T~edf~~tl~fi~~~  319 (434)
T PRK14330        248 KVAKSIHLPVQSGSNRILK-LMNRRY--TREEYLELIEKIRSKVPDASISSDII--VGFPTE---TEEDFMETVDLVEKA  319 (434)
T ss_pred             cccCceecCcCCCCHHHHH-hcCCCC--CHHHHHHHHHHHHHhCCCCEEEEEEE--EECCCC---CHHHHHHHHHHHHhc
Confidence              56677743 33554333 454432  345566778888886  666776665  677765   567777788888888


Q ss_pred             CCCEEE
Q 015894          261 GCSEIS  266 (398)
Q Consensus       261 Gad~I~  266 (398)
                      +.+.+.
T Consensus       320 ~~~~~~  325 (434)
T PRK14330        320 QFERLN  325 (434)
T ss_pred             CCCEEe
Confidence            887654

>TIGR01574 miaB-methiolase tRNA-N(6)-(isopentenyl)adenosine-37 thiotransferase enzyme MiaB

Probab=88.24  E-value=29  Score=36.15  Aligned_cols=144  Identities=14%  Similarity=0.146  Sum_probs=84.5

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCc-----ccCCCCHHHHHHHHHhccCCc---EEEEeC---CHhhHHHHHH
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKW-----VPQLADAKDVMAAIQNVEGAR---FPVLTP---NLKGFEAAVA  183 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~-----~p~~~D~~~v~~~i~~~~~~~---l~~l~~---n~~~ie~a~~  183 (398)
                      ..+.+..++-++.|.+.|+..|-+....-..|     .+...+..++++.+...++..   +..+-+   +.+-++...+
T Consensus       173 sr~~e~I~~Ei~~l~~~g~~ei~l~~~~~~~y~g~d~~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~l~~ell~~l~~  252 (438)
T TIGR01574       173 SRPFDDILQEVQKLAEKGVREITLLGQNVNAYRGKDFEGKTMDFSDLLRELSTIDGIERIRFTSSHPLDFDDDLIEVFAN  252 (438)
T ss_pred             ccCHHHHHHHHHHHHHcCCeEEEEEecccCCccCCCCCCCcccHHHHHHHHHhcCCceEEEEecCCcccCCHHHHHHHHh
Confidence            57888888888999999998876642110111     001113455566555444432   222223   2344666677


Q ss_pred             cC--CCEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHH
Q 015894          184 AG--AKEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLY  258 (398)
Q Consensus       184 ~G--v~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~  258 (398)
                      +|  ...+++-+ +.|+.-++. +++.  ...+.+.++++.+++.  |+.+.++++  +|.|.+   +++.+.+.++.+.
T Consensus       253 ~g~~~~~l~iglQSgsd~vLk~-m~R~--~t~~~~~~~v~~ir~~~~~i~i~~d~I--vG~PgE---t~ed~~~tl~~i~  324 (438)
T TIGR01574       253 NPKLCKSMHLPVQSGSSEILKL-MKRG--YTREWYLNLVRKLRAACPNVSISTDII--VGFPGE---TEEDFEETLDLLR  324 (438)
T ss_pred             CCCccCceeeCCCcCCHHHHHh-cCCC--CCHHHHHHHHHHHHHhCCCCeEeeCEE--EeCCCC---CHHHHHHHHHHHH
Confidence            77  77777754 445554443 5442  1223445566777766  666665565  676765   5677888888888


Q ss_pred             hCCCCEEE
Q 015894          259 DMGCSEIS  266 (398)
Q Consensus       259 ~~Gad~I~  266 (398)
                      +.+.+.+.
T Consensus       325 ~~~~~~~~  332 (438)
T TIGR01574       325 EVEFDSAF  332 (438)
T ss_pred             hcCCCeee
Confidence            88877554

Hits to this model span all major groups of bacteria and eukaryotes, but not archaea, which are known to lack this particular tRNA modification. The enzyme from Thermotoga maritima has been cloned, expressed, spectroscopically characterized and shown to complement the E. coli MiaB enzyme.

>PLN02417 dihydrodipicolinate synthase

Probab=88.22  E-value=4.4  Score=39.67  Aligned_cols=83  Identities=11%  Similarity=0.112  Sum_probs=68.0

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCEEEEccCcCc---CCHHHHHHHHHHHHhhCC-CCeEEEEe-CCccchHHHHHHHHHHh
Q 015894          242 EGMVPPSKVAYVSKQLYDMGCSEISLGDTIGV---GTPGTVIPMLEAVLDAVP-VDKLAVHF-HDTYGQALSNILASLQM  316 (398)
Q Consensus       242 ~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p-~~~l~~H~-Hnd~GlA~ANalaAl~a  316 (398)
                      .+..|.+-+.++++.+.+.|++.|.+.-|.|-   ++.++-.++++.+.+..+ .++|-+|. +++.--++..+..|-++
T Consensus        16 ~g~iD~~~~~~~i~~l~~~Gv~Gi~~~GstGE~~~ls~~Er~~~~~~~~~~~~~~~pvi~gv~~~~t~~~i~~a~~a~~~   95 (280)
T PLN02417         16 DGRFDLEAYDSLVNMQIENGAEGLIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGKIKVIGNTGSNSTREAIHATEQGFAV   95 (280)
T ss_pred             CCCcCHHHHHHHHHHHHHcCCCEEEECccCcchhhCCHHHHHHHHHHHHHHhCCCCcEEEECCCccHHHHHHHHHHHHHc
Confidence            35789999999999999999999999999995   556777777777777654 35666665 77888999999999999


Q ss_pred             CCCEEeec
Q 015894          317 GISTVDSS  324 (398)
Q Consensus       317 Ga~~VD~S  324 (398)
                      |++.|=..
T Consensus        96 Gadav~~~  103 (280)
T PLN02417         96 GMHAALHI  103 (280)
T ss_pred             CCCEEEEc
Confidence            99977654

>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=88.19  E-value=23  Score=33.77  Aligned_cols=145  Identities=16%  Similarity=0.174  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHhcCCCEEEEecCCCC-CcccCCCCHHHHHHHHHhccCCcEEEEeCCHhhHHHHHHcCCCEEEEeccCchH
Q 015894          120 VKVELIKLLVSSGLAVVEATSFVSP-KWVPQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASES  198 (398)
Q Consensus       120 ~k~~ia~~L~~aGv~~IEvG~~~~~-~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~  198 (398)
                      ...+-|..|.++|++.|-.|--+.+ -..|.. | .++...+.+..  ...+.++....++.....|+.+|.+..+-.+-
T Consensus        55 ~t~~aAl~Lada~vdvI~Y~CtsgS~i~G~~~-d-~ei~~~ie~~~--~v~vvTts~Avv~aL~al~a~ri~vlTPY~~e  130 (238)
T COG3473          55 YTERAALELADAGVDVIVYGCTSGSLIGGPGY-D-KEIAQRIEEAK--GVPVVTTSTAVVEALNALGAQRISVLTPYIDE  130 (238)
T ss_pred             HHHHHHHhcCccccCEEEEeccceeeecCCch-h-HHHHHHHHhcc--CCceeechHHHHHHHHhhCcceEEEeccchhh
Confidence            3355777889999999998732211 000111 3 34555665433  44566666667777788899999998774331


Q ss_pred             HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCC---CCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCC
Q 015894          199 FSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPV---EGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGT  275 (398)
Q Consensus       199 ~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~---~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~  275 (398)
                                     --+..+++..+.|++|.-..+  .|-++   -+|.+|..+.++++++..-++|.|.+.     ++
T Consensus       131 ---------------vn~~e~ef~~~~Gfeiv~~~~--Lgi~dn~eigr~~P~~~y~lAk~~~~~~~DaiFiS-----CT  188 (238)
T COG3473         131 ---------------VNQREIEFLEANGFEIVDFKG--LGITDNLEIGRQEPWAVYRLAKEVFTPDADAIFIS-----CT  188 (238)
T ss_pred             ---------------hhhHHHHHHHhCCeEEEEeec--cCCcccchhcccChHHHHHHHHHhcCCCCCeEEEE-----ee
Confidence                           113456777789998753333  22223   368899999999999998899998886     45


Q ss_pred             HHHHHHHHHHHHhhC
Q 015894          276 PGTVIPMLEAVLDAV  290 (398)
Q Consensus       276 P~~v~~lv~~l~~~~  290 (398)
                      -.+..+.|..+-+..
T Consensus       189 nlRt~eii~~lE~~~  203 (238)
T COG3473         189 NLRTFEIIEKLERDT  203 (238)
T ss_pred             ccccHHHHHHHHHHh
Confidence            556667777776655

>PRK14339 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=88.11  E-value=36  Score=35.40  Aligned_cols=143  Identities=17%  Similarity=0.174  Sum_probs=82.7

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCC---CC-Ccc--cCCCCHHHHHHHHHhccCC---cEEEEeCC---HhhHHHHH
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFV---SP-KWV--PQLADAKDVMAAIQNVEGA---RFPVLTPN---LKGFEAAV  182 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~---~~-~~~--p~~~D~~~v~~~i~~~~~~---~l~~l~~n---~~~ie~a~  182 (398)
                      ..+.++.++-++.|.+.|++.|-+....   .. ++.  +...+..++++.+..+++.   ++..+-+.   .+-++...
T Consensus       155 sr~~e~I~~Ei~~l~~~G~keI~l~~~~~~~yg~d~~~~~~~~~l~~Ll~~l~~~~g~~~ir~~s~~p~~~~~ell~~~~  234 (420)
T PRK14339        155 SIPMDLILKEAEKAVNNGAKEIFLLGQNVNNYGKRFSSEHEKVDFSDLLDKLSEIEGLERIRFTSPHPLHMDDKFLEEFA  234 (420)
T ss_pred             CCCHHHHHHHHHHHHHCCCcEEEEeeeccccccCCCcCCcccccHHHHHHHHhcCCCccEEEECCCChhhcCHHHHHHHH
Confidence            4688999988999999999988774311   11 100  0012355666666554543   32222222   23356666


Q ss_pred             Hc--CCCEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894          183 AA--GAKEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL  257 (398)
Q Consensus       183 ~~--Gv~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l  257 (398)
                      +.  |...+++-+ +.||.-++ .+|+..  ..+.+.++++.+++.  |+.+..+++  +|.|.+   +.+.+.+.++.+
T Consensus       235 ~~~~~~~~l~iglQSgsd~vLk-~M~R~~--t~~~~~~~v~~lr~~~p~i~i~~d~I--vGfPgE---Teedf~~Tl~fl  306 (420)
T PRK14339        235 KNPKICKSIHMPLQSGSSEILK-AMKRGY--TKEWFLNRAEKLRALVPEVSISTDII--VGFPGE---SDKDFEDTMDVL  306 (420)
T ss_pred             cCCCccCceEeCCccCCHHHHH-hccCCC--CHHHHHHHHHHHHHHCCCCEEEEEEE--EECCCC---CHHHHHHHHHHH
Confidence            65  467788754 34554333 344421  234455667777776  666766665  677876   456677777777


Q ss_pred             HhCCCCEE
Q 015894          258 YDMGCSEI  265 (398)
Q Consensus       258 ~~~Gad~I  265 (398)
                      .+.+.+.+
T Consensus       307 ~~l~~~~~  314 (420)
T PRK14339        307 EKVRFEQI  314 (420)
T ss_pred             HhcCCCEE
Confidence            77777654

>PF01261 AP_endonuc_2: Xylose isomerase-like TIM barrel; InterPro: IPR012307 This TIM alpha/beta barrel structure is found in xylose isomerase (P19148 from SWISSPROT) and in endonuclease IV (P12638 from SWISSPROT, 3

Probab=88.06  E-value=10  Score=33.88  Aligned_cols=82  Identities=11%  Similarity=0.073  Sum_probs=48.7

Q ss_pred             HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC---CCCC------HH
Q 015894          178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE---GMVP------PS  248 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~---~r~~------~~  248 (398)
                      ++.+.++|.+.|.+........       .  +....+.++.+.++++|+.+.............   ....      .+
T Consensus         1 l~~~~~~G~~~vE~~~~~~~~~-------~--~~~~~~~~~~~~~~~~gl~i~~~~~~~~~~~~~~~~~~~~~~r~~~~~   71 (213)
T PF01261_consen    1 LEAAAEAGFDGVELRFDDGQPW-------D--EKDDEAEELRRLLEDYGLKIASLHPPTNFWSPDEENGSANDEREEALE   71 (213)
T ss_dssp             HHHHHHTTHSEEEEEHHHHSHH-------T--HHHHHHHHHHHHHHHTTCEEEEEEEEESSSCTGTTSTTSSSHHHHHHH
T ss_pred             ChHHHHcCCCEEEEecCCCccc-------c--cchHHHHHHHHHHHHcCCeEEEEecccccccccccccCcchhhHHHHH
Confidence            4677888999888865421111       0  003455677788889999865322222211110   1122      56


Q ss_pred             HHHHHHHHHHhCCCCEEEEc
Q 015894          249 KVAYVSKQLYDMGCSEISLG  268 (398)
Q Consensus       249 ~l~~~a~~l~~~Gad~I~L~  268 (398)
                      .+.+.++.+..+|++.+.+.
T Consensus        72 ~~~~~i~~a~~lg~~~i~~~   91 (213)
T PF01261_consen   72 YLKKAIDLAKRLGAKYIVVH   91 (213)
T ss_dssp             HHHHHHHHHHHHTBSEEEEE
T ss_pred             HHHHHHHHHHHhCCCceeec
Confidence            77778888888899887776

1.21.2 from EC). This domain is also found in the N termini of bacterial myo-inositol catabolism proteins. These are involved in the myo-inositol catabolism pathway, and is required for growth on myo-inositol in Rhizobium leguminosarum bv. viciae []. ; PDB: 3KWS_B 3DX5_A 3CQH_B 3CQI_A 3CQK_A 3CQJ_B 2G0W_B 1DXI_A 2ZDS_D 3TVA_B ....

>COG2100 Predicted Fe-S oxidoreductase [General function prediction only]

Probab=87.95  E-value=7.2  Score=39.45  Aligned_cols=127  Identities=17%  Similarity=0.269  Sum_probs=73.5

Q ss_pred             EEEeeeecCCCCCC----------CCHHHHHHHHHHHHhCCCCE-EEEccCcCcCCHH---HHHHHHHHHHhhCCC-CeE
Q 015894          231 GYLSCVVGCPVEGM----------VPPSKVAYVSKQLYDMGCSE-ISLGDTIGVGTPG---TVIPMLEAVLDAVPV-DKL  295 (398)
Q Consensus       231 ~~l~~~fg~~~~~r----------~~~~~l~~~a~~l~~~Gad~-I~L~DT~G~~~P~---~v~~lv~~l~~~~p~-~~l  295 (398)
                      ++++|.|.+-|++.          .++|++.+-.+..++..-+. =..=|  |.+.|.   .+.+++.++++. |. ..+
T Consensus       117 CnlnCIfCSVdeGp~SrtR~~dy~Vd~eyLl~w~~kVa~~KgkglEaHlD--GqGEP~lYP~l~~lVqalk~~-~~v~vV  193 (414)
T COG2100         117 CNLNCIFCSVDEGPYSRTRKLDYVVDPEYLLEWFEKVARFKGKGLEAHLD--GQGEPLLYPHLVDLVQALKEH-KGVEVV  193 (414)
T ss_pred             ccceeEEEeccCCcccceeccceEecHHHHHHHHHHHHhhhCCCeEEEec--CCCCCccchhHHHHHHHHhcC-CCceEE
Confidence            35566664444443          57888888877777663222 23334  555664   456667777654 43 235


Q ss_pred             EEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHh
Q 015894          296 AVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHL  375 (398)
Q Consensus       296 ~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~  375 (398)
                      .+.+|-.. |.--.+-+-.+||.++|+.|+..+-.              .++-+|  .|+ ..+|++++.++++++.+ +
T Consensus       194 SmQTng~~-L~~~lv~eLeeAGLdRiNlSv~aLDp--------------k~Ak~L--~G~-~dYdv~kvle~aE~i~~-a  254 (414)
T COG2100         194 SMQTNGVL-LSKKLVDELEEAGLDRINLSVDALDP--------------KLAKML--AGR-KDYDVKKVLEVAEYIAN-A  254 (414)
T ss_pred             EEeeCcee-ccHHHHHHHHHhCCceEEeecccCCH--------------HHHHHh--cCc-cccCHHHHHHHHHHHHh-C
Confidence            55554331 22222333347999999999998876              122122  254 35777777777777776 5


Q ss_pred             CCCC
Q 015894          376 GRTS  379 (398)
Q Consensus       376 g~~~  379 (398)
                      ++.+
T Consensus       255 ~idv  258 (414)
T COG2100         255 GIDV  258 (414)
T ss_pred             CCCE
Confidence            5443

>TIGR00683 nanA N-acetylneuraminate lyase

Probab=87.95  E-value=13  Score=36.66  Aligned_cols=80  Identities=14%  Similarity=0.048  Sum_probs=44.7

Q ss_pred             HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHh-C-CCC--EEEEccCcCcCCHHHHHHHHHHHHhhC
Q 015894          215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYD-M-GCS--EISLGDTIGVGTPGTVIPMLEAVLDAV  290 (398)
Q Consensus       215 ~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~-~-Gad--~I~L~DT~G~~~P~~v~~lv~~l~~~~  290 (398)
                      ..+.++.|++.|..-..     ...|.-...+.+.+....+.+.+ . +..  ...++...|.-.|.+   ++..+.+ .
T Consensus        85 ~i~la~~a~~~Gad~v~-----v~~P~y~~~~~~~i~~yf~~v~~~~~~lpv~lYn~P~~tg~~l~~~---~i~~L~~-~  155 (290)
T TIGR00683        85 AVELGKYATELGYDCLS-----AVTPFYYKFSFPEIKHYYDTIIAETGGLNMIVYSIPFLTGVNMGIE---QFGELYK-N  155 (290)
T ss_pred             HHHHHHHHHHhCCCEEE-----EeCCcCCCCCHHHHHHHHHHHHhhCCCCCEEEEeCccccccCcCHH---HHHHHhc-C
Confidence            34556778888887431     11355555667777777777754 3 333  345566677655533   2333333 5


Q ss_pred             CCCeEEEE-eCCccc
Q 015894          291 PVDKLAVH-FHDTYG  304 (398)
Q Consensus       291 p~~~l~~H-~Hnd~G  304 (398)
                      |++ +++. .+.|..
T Consensus       156 pnv-~giK~s~~d~~  169 (290)
T TIGR00683       156 PKV-LGVKFTAGDFY  169 (290)
T ss_pred             CCE-EEEEeCCCCHH
Confidence            764 5653 555543

N-acetylneuraminate lyase is also known as N-acetylneuraminic acid aldolase, sialic acid aldolase, or sialate lyase. It is an intracellular enzyme. The structure of this homotetrameric enzyme related to dihydrodipicolinate synthase is known. In Clostridium tertium, the enzyme appears to be in an operon with a secreted sialidase that releases sialic acid from host sialoglycoconjugates. In several E. coli strains, however, this enzyme is responsible for N-acetyl-D-neuraminic acid synthesis for capsule production by condensing N-acetyl-D-mannosamine and pyruvate.

>PRK05283 deoxyribose-phosphate aldolase; Provisional

Probab=87.95  E-value=28  Score=34.03  Aligned_cols=135  Identities=13%  Similarity=0.050  Sum_probs=82.6

Q ss_pred             EeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCH---HHHHHHHHHHHhhCC-C----CeEEEEeCCccc
Q 015894          233 LSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTP---GTVIPMLEAVLDAVP-V----DKLAVHFHDTYG  304 (398)
Q Consensus       233 l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P---~~v~~lv~~l~~~~p-~----~~l~~H~Hnd~G  304 (398)
                      ++.+.|.|....++...+.+ ++.+.+.||++|-+.=-.|.+.-   ..+.+-++.+++... +    +.|+...=++..
T Consensus        69 v~tVigFP~G~~~t~~K~~E-a~~Ai~~GAdEiD~Vinig~lk~g~~~~v~~ei~~v~~~~~~~~~lKVIlEt~~L~~ee  147 (257)
T PRK05283         69 IATVTNFPHGNDDIDIALAE-TRAAIAYGADEVDVVFPYRALMAGNEQVGFELVKACKEACAANVLLKVIIETGELKDEA  147 (257)
T ss_pred             EEEEecCCCCCCcHHHHHHH-HHHHHHcCCCEEeeeccHHHHhCCcHHHHHHHHHHHHHHhCCCceEEEEEeccccCCHH
Confidence            44556778755444455555 56777889999988777776655   445566666665433 1    236666566665


Q ss_pred             hHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhC---------CCC--Ccc-ChHHHHHHHHHHH
Q 015894          305 QALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGL---------GVR--TNV-DIRKLMIAGDFIC  372 (398)
Q Consensus       305 lA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~---------Gi~--t~i-Dl~~L~~~~~~v~  372 (398)
                      .=.-.+..|+++||++|=+|-+ .+        .+.+..|++..+.+..         |++  =|| +++...+.-+..+
T Consensus       148 ~i~~a~~~a~~aGADFVKTSTG-f~--------~~gAt~edv~lm~~~i~~~~~~~~vgIKAsGGIrt~~~A~~~i~ag~  218 (257)
T PRK05283        148 LIRKASEIAIKAGADFIKTSTG-KV--------PVNATLEAARIMLEVIRDMGVAKTVGFKPAGGVRTAEDAAQYLALAD  218 (257)
T ss_pred             HHHHHHHHHHHhCCCEEEcCCC-CC--------CCCCCHHHHHHHHHHHHhcccCCCeeEEccCCCCCHHHHHHHHHHHH
Confidence            3344566799999999999865 32        2346777766654431         121  122 2455666666666


Q ss_pred             HHhCC
Q 015894          373 KHLGR  377 (398)
Q Consensus       373 ~~~g~  377 (398)
                      +.+|-
T Consensus       219 ~~lg~  223 (257)
T PRK05283        219 EILGA  223 (257)
T ss_pred             HHhCh
Confidence            76664

>PF02679 ComA: (2R)-phospho-3-sulfolactate synthase (ComA); InterPro: IPR003830 Methanogenic archaea produce methane via the anaerobic reduction of acetate or single carbon compounds []

Probab=87.91  E-value=2.3  Score=41.24  Aligned_cols=170  Identities=17%  Similarity=0.126  Sum_probs=92.4

Q ss_pred             HHHHHHhcC--CCEEEEecCCCCCcccCCCCHHHHHHHHHhc--cCCcEEE--------EeCCH-hh-HHHHHHcCCCEE
Q 015894          124 LIKLLVSSG--LAVVEATSFVSPKWVPQLADAKDVMAAIQNV--EGARFPV--------LTPNL-KG-FEAAVAAGAKEV  189 (398)
Q Consensus       124 ia~~L~~aG--v~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~--~~~~l~~--------l~~n~-~~-ie~a~~~Gv~~v  189 (398)
                      +-..|.-+|  ||.+-+|+..+.     +.+.+.+.+.+...  -++.+..        +.++. ++ ++.+.+.|.+.|
T Consensus        27 ~~dlLe~ag~yID~~K~g~Gt~~-----l~~~~~l~eki~l~~~~gV~v~~GGtl~E~a~~q~~~~~yl~~~k~lGf~~I  101 (244)
T PF02679_consen   27 LEDLLESAGDYIDFLKFGWGTSA-----LYPEEILKEKIDLAHSHGVYVYPGGTLFEVAYQQGKFDEYLEECKELGFDAI  101 (244)
T ss_dssp             HHHHHHHHGGG-SEEEE-TTGGG-----GSTCHHHHHHHHHHHCTT-EEEE-HHHHHHHHHTT-HHHHHHHHHHCT-SEE
T ss_pred             HHHHHHHhhhhccEEEecCceee-----ecCHHHHHHHHHHHHHcCCeEeCCcHHHHHHHhcChHHHHHHHHHHcCCCEE
Confidence            444556666  888888875431     11122333334321  2332211        11332 23 577888999999


Q ss_pred             EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC---CCCCHHHHHHHHHHHHhCCCCEEE
Q 015894          190 AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE---GMVPPSKVAYVSKQLYDMGCSEIS  266 (398)
Q Consensus       190 ~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~---~r~~~~~l~~~a~~l~~~Gad~I~  266 (398)
                      -|....-++        +    .+.-.+.|+.+++.|+.|-.    .+|.-+.   ...+++.+.+.++.-.++||+.|.
T Consensus       102 EiSdGti~l--------~----~~~r~~~I~~~~~~Gf~v~~----EvG~K~~~~~~~~~~~~~i~~~~~dLeAGA~~Vi  165 (244)
T PF02679_consen  102 EISDGTIDL--------P----EEERLRLIRKAKEEGFKVLS----EVGKKDPESDFSLDPEELIEQAKRDLEAGADKVI  165 (244)
T ss_dssp             EE--SSS---------------HHHHHHHHHHHCCTTSEEEE----EES-SSHHHHTT--CCHHHHHHHHHHHHTECEEE
T ss_pred             EecCCceeC--------C----HHHHHHHHHHHHHCCCEEee----cccCCCchhcccCCHHHHHHHHHHHHHCCCCEEE
Confidence            997664332        2    23334678999999998853    2443221   234578889999999999999874


Q ss_pred             ----------EccCcCcCCHHHHHHHHHH------------------HHhhC-CCCeEEEEeCCccchHHHHHHHHHHhC
Q 015894          267 ----------LGDTIGVGTPGTVIPMLEA------------------VLDAV-PVDKLAVHFHDTYGQALSNILASLQMG  317 (398)
Q Consensus       267 ----------L~DT~G~~~P~~v~~lv~~------------------l~~~~-p~~~l~~H~Hnd~GlA~ANalaAl~aG  317 (398)
                                |.|..|......+..+++.                  +.+++ |++.|+.=.|++     .-+|++++.|
T Consensus       166 iEarEsG~~Gi~~~~g~~r~d~v~~i~~~~~~~~lifEAp~k~qq~~~I~~~G~~VNLgNI~~~e-----Vl~LE~LR~G  240 (244)
T PF02679_consen  166 IEARESGKGGIYDNDGEVRTDLVEKIIERLGLEKLIFEAPQKEQQEWFIKRFGPNVNLGNIAPSE-----VLALETLRRG  240 (244)
T ss_dssp             E--TTT--STTB-TTS-B-HHHHHHHHTTS-GGGEEEE--SHHHHHHHHHHH-TT--EEEEEGGG-----HHHHHHHHCT
T ss_pred             EeeeccCCCCccCCCCCccHHHHHHHHHhCCHhHEEEeCCCHhHHHHHHHHhCCCcCcccCCHHH-----HHHHHHHhcc
Confidence                      5777888888888887752                  22333 667776655555     4566777766


Q ss_pred             CC
Q 015894          318 IS  319 (398)
Q Consensus       318 a~  319 (398)
                      .+
T Consensus       241 Lr  242 (244)
T PF02679_consen  241 LR  242 (244)
T ss_dssp             -S
T ss_pred             cc
Confidence            43

Coenzyme M (CoM; 2-mercaptoethanesulphonic acid) serves as the terminal methyl carrier for this process. Previously thought to be unique to methanogenic archaea, CoM has also been found in methylotrophic bacteria. Biosynthesis of CoM begins with the Michael addition of sulphite to phosphoenolpyruvate, forming 2-phospho-3-sulpholactate (PSL). This reaction is catalyzed by members of this family, PSL synthase (ComA) []. Subsequently, PSL is dephosphorylated by phosphosulpholactate phosphatase (ComB) to form 3-sulpholactate [], which is then converted to 3-sulphopyruvate by L-sulpholactate dehydrogenase (ComC; 1.1.1.272 from EC) []. Sulphopyruvate decarboxylase (ComDE; 4.1.1.79 from EC) converts 3-sulphopyruvate to sulphoacetaldehyde []. Reductive thiolation of sulphoacetaldehyde is the final step.; GO: 0019295 coenzyme M biosynthetic process; PDB: 1U83_A 1QWG_A.

>PRK14337 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=87.88  E-value=26  Score=36.73  Aligned_cols=145  Identities=16%  Similarity=0.153  Sum_probs=83.9

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCC----CCcccCCCCHHHHHHHHHhccCC---cEEEEeCC---HhhHHHHHH-
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVS----PKWVPQLADAKDVMAAIQNVEGA---RFPVLTPN---LKGFEAAVA-  183 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~----~~~~p~~~D~~~v~~~i~~~~~~---~l~~l~~n---~~~ie~a~~-  183 (398)
                      ..+.+..++=++.|.+.|++.|.+....-    .+..+......++++.+..+++.   ++..+-++   .+-++...+ 
T Consensus       176 sr~~e~Iv~Ei~~l~~~G~~eI~l~~~~~~~yg~d~~~~~~~l~~Ll~~l~~~~g~~~ir~~~~~p~~i~~ell~~l~~~  255 (446)
T PRK14337        176 SRSSAAVLDECRALVDRGAREITLLGQNVNSYGQDKHGDGTSFAQLLHKVAALPGLERLRFTTPHPKDIAPEVIEAFGEL  255 (446)
T ss_pred             eCCHHHHHHHHHHHHHCCCeEEEEEecCccccccCCCCCCccHHHHHHHHHhcCCCcEEEEccCCcccCCHHHHHHHHhC
Confidence            46788888888889889999888753110    00000001234455555544443   33332232   233555555 


Q ss_pred             -cCCCEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHh
Q 015894          184 -AGAKEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYD  259 (398)
Q Consensus       184 -~Gv~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~  259 (398)
                       .|...+++-+ +.|+.-++ .+|+.  -..+.+.++++.+++.  |+.+..+++  +|.|.+   +.+.+.+.++.+.+
T Consensus       256 ~~~~~~l~iglQSgsd~vLk-~M~R~--~t~e~~~~~v~~lr~~~~~i~i~~d~I--vG~PgE---T~ed~~~tl~~l~~  327 (446)
T PRK14337        256 PNLCPRLHLPLQSGSDRILK-AMGRK--YDMARYLDIVTDLRAARPDIALTTDLI--VGFPGE---TEEDFEQTLEAMRT  327 (446)
T ss_pred             CcccCeEEECCCCCCHHHHH-hCCCC--CCHHHHHHHHHHHHHhCCCCeEEEeEE--EECCCC---CHHHHHHHHHHHHh
Confidence             3567787744 44554443 35542  1234455667777776  566666665  677866   46777888888888


Q ss_pred             CCCCEEEE
Q 015894          260 MGCSEISL  267 (398)
Q Consensus       260 ~Gad~I~L  267 (398)
                      .+.+.+.+
T Consensus       328 ~~~~~~~~  335 (446)
T PRK14337        328 VGFASSFS  335 (446)
T ss_pred             cCCCeeEE
Confidence            88876544

>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase

Probab=87.86  E-value=4.6  Score=39.85  Aligned_cols=82  Identities=15%  Similarity=0.072  Sum_probs=65.6

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCC---HHHHHHHHHHHHhhCC-CCeEEEEe-CCccchHHHHHHHHHHhC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGT---PGTVIPMLEAVLDAVP-VDKLAVHF-HDTYGQALSNILASLQMG  317 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~---P~~v~~lv~~l~~~~p-~~~l~~H~-Hnd~GlA~ANalaAl~aG  317 (398)
                      +..|.+.+.++++.+.+.|++.|.+.-|+|-..   -++-.++++.+.+... .++|-+|. +++.--++..+..|-++|
T Consensus        16 g~iD~~~l~~lv~~~~~~Gv~gi~v~GstGE~~~Ls~~Er~~l~~~~~~~~~g~~pvi~gv~~~~t~~ai~~a~~A~~~G   95 (294)
T TIGR02313        16 GDIDEEALRELIEFQIEGGSHAISVGGTSGEPGSLTLEERKQAIENAIDQIAGRIPFAPGTGALNHDETLELTKFAEEAG   95 (294)
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccCcccccCCHHHHHHHHHHHHHHhCCCCcEEEECCcchHHHHHHHHHHHHHcC
Confidence            578999999999999999999999999999654   5566666666666554 35676665 688888999999999999


Q ss_pred             CCEEeec
Q 015894          318 ISTVDSS  324 (398)
Q Consensus       318 a~~VD~S  324 (398)
                      |+.|=..
T Consensus        96 ad~v~v~  102 (294)
T TIGR02313        96 ADAAMVI  102 (294)
T ss_pred             CCEEEEc
Confidence            9876544

This model represents a subset of the DapA (dihydrodipicolinate synthase) family which has apparently evolved a separate function. The product of DapA, dihydrodipicolinate, results from the non-enzymatic cyclization and dehydration of 6-amino-2,4-dihydroxyhept-2-ene-1,7-dioic acid, which is different from the substrate of this reaction only in the presence of the amino group. In the absence of this amino group, and running the reaction in the opposite direction, the reaction corresponds to the HpaI aldolase component of the 4-hydroxyphenylacetic acid catabolism pathway (see TIGR02311). At present, this variant of DapA is found only in Oceanobacillus iheyensis HTE831 and Thermus thermophilus HB27. In both of these cases, one or more other DapA genes can be found and the one identified by this model is part of an operon for 4-hydroxyphenylacetic acid catabolism.

>cd00945 Aldolase_Class_I Class I aldolases

Probab=87.76  E-value=20  Score=32.02  Aligned_cols=96  Identities=20%  Similarity=0.122  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHHhCCCCEEEEccCcCcCC---HHHHHHHHHHHHhhC-CCCeEEEE--eCCccchHHHH--HHHHHHhCC
Q 015894          247 PSKVAYVSKQLYDMGCSEISLGDTIGVGT---PGTVIPMLEAVLDAV-PVDKLAVH--FHDTYGQALSN--ILASLQMGI  318 (398)
Q Consensus       247 ~~~l~~~a~~l~~~Gad~I~L~DT~G~~~---P~~v~~lv~~l~~~~-p~~~l~~H--~Hnd~GlA~AN--alaAl~aGa  318 (398)
                      .+...+.++.+.++|+|.+.+.-..+...   +..+.+.++.+.+.. ++.++-+.  .+.+.......  +..+.+.|+
T Consensus        64 ~~~~~~~a~~a~~~Gad~i~v~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~pv~iy~~p~~~~~~~~~~~~~~~~~~~g~  143 (201)
T cd00945          64 TEVKVAEVEEAIDLGADEIDVVINIGSLKEGDWEEVLEEIAAVVEAADGGLPLKVILETRGLKTADEIAKAARIAAEAGA  143 (201)
T ss_pred             HHHHHHHHHHHHHcCCCEEEEeccHHHHhCCCHHHHHHHHHHHHHHhcCCceEEEEEECCCCCCHHHHHHHHHHHHHhCC
Confidence            67788889999999999998876665443   578888888888874 23444332  22221222111  223457899


Q ss_pred             CEEeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q 015894          319 STVDSSVSGLGGCPYAKGASGNVATEDVVYMLN  351 (398)
Q Consensus       319 ~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~  351 (398)
                      +.|-.+....         .|+..++.+....+
T Consensus       144 ~~iK~~~~~~---------~~~~~~~~~~~i~~  167 (201)
T cd00945         144 DFIKTSTGFG---------GGGATVEDVKLMKE  167 (201)
T ss_pred             CEEEeCCCCC---------CCCCCHHHHHHHHH
Confidence            9998876432         23455555554444

The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.

>PRK09490 metH B12-dependent methionine synthase; Provisional

Probab=87.69  E-value=62  Score=38.49  Aligned_cols=224  Identities=16%  Similarity=0.165  Sum_probs=0.0

Q ss_pred             HHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-------cCCcEEEEeCCHhh-----------HHHHHH
Q 015894          122 VELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-------EGARFPVLTPNLKG-----------FEAAVA  183 (398)
Q Consensus       122 ~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-------~~~~l~~l~~n~~~-----------ie~a~~  183 (398)
                      .+.++.|.+.|+|.|-+-...+.      .+.+..+.+++..       ..+-+++-+....+           +.....
T Consensus       167 ~eQi~~L~e~GVDllliETi~d~------~EakAal~a~~~~~~~~~~~lPv~vS~T~~d~~Gr~lsG~~~ea~~~~l~~  240 (1229)
T PRK09490        167 REQTRGLIEGGADLILIETIFDT------LNAKAAIFAVEEVFEELGVRLPVMISGTITDASGRTLSGQTTEAFWNSLRH  240 (1229)
T ss_pred             HHHHHHHHhCCCCEEEEeeeCCH------HHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCccCCCCcHHHHHHHHhc


Q ss_pred             cCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecCCC---CCCCCHHHHHHHHHHHHh
Q 015894          184 AGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAREL-SIPVRGYLSCVVGCPV---EGMVPPSKVAYVSKQLYD  259 (398)
Q Consensus       184 ~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~~v~~~l~~~fg~~~---~~r~~~~~l~~~a~~l~~  259 (398)
                      .|++.|.+=++..+               +.+...++...+. ...+.++=.  -|-|.   ....+|+++.+.++.+.+
T Consensus       241 ~~~~avGlNCs~GP---------------~~m~~~l~~l~~~~~~pi~vyPN--AGlP~~~~~yd~tPe~~a~~~~~~~~  303 (1229)
T PRK09490        241 AKPLSIGLNCALGA---------------DELRPYVEELSRIADTYVSAHPN--AGLPNAFGEYDETPEEMAAQIGEFAE  303 (1229)
T ss_pred             CCCCEEEEcCCCcH---------------HHHHHHHHHHHHhcCCeEEEEeC--CCCCCCCCCCCCCHHHHHHHHHHHHH


Q ss_pred             CC-CCEE-EEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeC-------------------------------------
Q 015894          260 MG-CSEI-SLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFH-------------------------------------  300 (398)
Q Consensus       260 ~G-ad~I-~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~H-------------------------------------  300 (398)
                      .| +..| .-|=|    +|++++.+.+.++..-|........+                                     
T Consensus       304 ~G~v~IIGGCCGT----tPeHI~ala~~l~~~~p~~~~~~~~~~~~S~~~~~~~~~~~~~~~IGER~N~~G~k~~~~~i~  379 (1229)
T PRK09490        304 SGFLNIVGGCCGT----TPEHIAAIAEAVAGLPPRKLPEIPVACRLSGLEPLNIDDDSLFVNVGERTNVTGSAKFARLIK  379 (1229)
T ss_pred             cCCCCEEEecCCC----CHHHHHHHHHHHhcCCCCCCCCcCcceeeecceEEeecCCCcccccccccchhccHHHHHHHH


Q ss_pred             -CccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHh----CCCCCccChHHHHHHHHHHHHHh
Q 015894          301 -DTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNG----LGVRTNVDIRKLMIAGDFICKHL  375 (398)
Q Consensus       301 -nd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~----~Gi~t~iDl~~L~~~~~~v~~~~  375 (398)
                       .|+.-++.-+..-+++||++||+.+ |.+.      ..+-..++.++..+..    ..+..-||..+-.-+..-+..+-
T Consensus       380 ~~d~~~al~~A~~qve~GA~iIDVn~-g~~~------id~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~ViEaaLk~~~  452 (1229)
T PRK09490        380 EEDYDEALDVARQQVENGAQIIDINM-DEGM------LDSEAAMVRFLNLIASEPDIARVPIMIDSSKWEVIEAGLKCIQ  452 (1229)
T ss_pred             cCCHHHHHHHHHHHHHCCCCEEEECC-CCCC------CCHHHHHHHHHHHHHhhhccCCceEEEeCCcHHHHHHHHhhcC


Q ss_pred             CCCC
Q 015894          376 GRTS  379 (398)
Q Consensus       376 g~~~  379 (398)
                      |.++
T Consensus       453 G~~I  456 (1229)
T PRK09490        453 GKGI  456 (1229)
T ss_pred             CCCE

>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5

Probab=87.63  E-value=22  Score=36.45  Aligned_cols=140  Identities=12%  Similarity=0.034  Sum_probs=83.3

Q ss_pred             HHHHHcCCCEEEEeccC--------chH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-C--CcEEEEEeeeecCCC--CC
Q 015894          179 EAAVAAGAKEVAIFASA--------SES--FSKSNINCTIEDSLIRYRDVALAAREL-S--IPVRGYLSCVVGCPV--EG  243 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~~--------Sd~--~~~~~~~~s~~~~l~~~~~~v~~ak~~-G--~~v~~~l~~~fg~~~--~~  243 (398)
                      ++|.++|.|.|.|...-        |+.  +++..+|-+.+.-.+.+.++++.+|+. |  +.|.+-++..-+...  .+
T Consensus       151 ~~a~~aGfDgVeih~ahGyLl~qFLSp~~N~RtDeYGGslenR~Rf~~eii~air~~vG~d~~v~vRis~~~~~~~~~~~  230 (361)
T cd04747         151 ADARRLGFDGIELHGAHGYLIDQFFWAGTNRRADGYGGSLAARSRFAAEVVKAIRAAVGPDFPIILRFSQWKQQDYTARL  230 (361)
T ss_pred             HHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEECcccccccccCC
Confidence            46678999988875432        122  244455678888888888999888885 5  345544542100111  11


Q ss_pred             CCCHHHHHHHHHHHHhCCCCEEEEccCcCc-CCHH---HHHHHHHHHHhhCCCCeEEEEeCCccc---------------
Q 015894          244 MVPPSKVAYVSKQLYDMGCSEISLGDTIGV-GTPG---TVIPMLEAVLDAVPVDKLAVHFHDTYG---------------  304 (398)
Q Consensus       244 r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~-~~P~---~v~~lv~~l~~~~p~~~l~~H~Hnd~G---------------  304 (398)
                      -.+++...++++.+.+.|+|.|.+.-  |. ..|.   .-..+...+++.++ +|+...+--+..               
T Consensus       231 g~~~~e~~~~~~~l~~~gvd~i~vs~--g~~~~~~~~~~~~~~~~~~k~~~~-~pv~~~G~i~~~~~~~~~~~~~~~~~~  307 (361)
T cd04747         231 ADTPDELEALLAPLVDAGVDIFHCST--RRFWEPEFEGSELNLAGWTKKLTG-LPTITVGSVGLDGDFIGAFAGDEGASP  307 (361)
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEecC--CCccCCCcCccchhHHHHHHHHcC-CCEEEECCccccccccccccccccccc
Confidence            25788889999999999999887632  21 1221   12345566777665 355555432111               


Q ss_pred             hHHHHHHHHHHhC-CCEE
Q 015894          305 QALSNILASLQMG-ISTV  321 (398)
Q Consensus       305 lA~ANalaAl~aG-a~~V  321 (398)
                      .....+..+++.| ||.|
T Consensus       308 ~~~~~a~~~l~~g~~D~V  325 (361)
T cd04747         308 ASLDRLLERLERGEFDLV  325 (361)
T ss_pred             CCHHHHHHHHHCCCCCee
Confidence            2346677778766 6654

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=87.50  E-value=24  Score=37.69  Aligned_cols=143  Identities=15%  Similarity=0.141  Sum_probs=83.4

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCC---HHHHHHHHHhccCC---cEEEEeC---CHhhHHHHHHcC
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLAD---AKDVMAAIQNVEGA---RFPVLTP---NLKGFEAAVAAG  185 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D---~~~v~~~i~~~~~~---~l~~l~~---n~~~ie~a~~~G  185 (398)
                      ..+.+..++=++.|.+.|+..|.+....-..|.-.+.+   ..++++.+..+++.   ++....+   +.+-++...+.|
T Consensus       185 sr~~e~Vv~Ei~~l~~~g~~ei~l~d~n~~~yG~d~~~~~~l~~Ll~~l~~i~~l~~ir~~~~~p~~~~~ell~~m~~~g  264 (502)
T PRK14326        185 DRRPGDILAEVQALVDEGVLEVTLLGQNVNAYGVSFGDRGAFSKLLRACGEIDGLERVRFTSPHPAEFTDDVIEAMAETP  264 (502)
T ss_pred             cCCHHHHHHHHHHHHHCCCceEEEEeecccccccCCCCHHHHHHHHHHHHhcCCccEEEEeccChhhCCHHHHHHHHhcC
Confidence            46788888888889888999887642110000000112   23444544444443   3332223   223356666776


Q ss_pred             --CCEEEEe-ccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC
Q 015894          186 --AKEVAIF-ASASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM  260 (398)
Q Consensus       186 --v~~v~i~-~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~  260 (398)
                        ...+++- =+.||.-++. +|+.  ...+.+.++++.+++.  |+.+..+++  +|.|.+   +.+.+.+.++.+.+.
T Consensus       265 ~~~~~l~lglQSgsd~iLk~-m~R~--~t~~~~~~~v~~lr~~~~~i~i~~~~I--vGfPgE---T~edf~~Tl~~i~~~  336 (502)
T PRK14326        265 NVCPQLHMPLQSGSDRVLRA-MRRS--YRSERFLGILEKVRAAMPDAAITTDII--VGFPGE---TEEDFQATLDVVREA  336 (502)
T ss_pred             CcCCcEEeccCCCCHHHHHh-cCCC--CCHHHHHHHHHHHHHhCCCCeEEEEEE--EECCCC---CHHHHHHHHHHHHHc
Confidence              6777773 4556655443 5553  2334556677788875  667776666  677876   467777777777788


Q ss_pred             CCCEE
Q 015894          261 GCSEI  265 (398)
Q Consensus       261 Gad~I  265 (398)
                      +.+.+
T Consensus       337 ~~~~~  341 (502)
T PRK14326        337 RFSSA  341 (502)
T ss_pred             CCCEE
Confidence            87643

>TIGR00423 radical SAM domain protein, CofH subfamily

Probab=87.33  E-value=7.4  Score=38.57  Aligned_cols=77  Identities=13%  Similarity=0.253  Sum_probs=56.6

Q ss_pred             CCCHHHHHHHHHHHHhCCCCEEEEccCcC-cCCHHHHHHHHHHHHhhCCCCeEEEEeC---------CccchHHHHHHHH
Q 015894          244 MVPPSKVAYVSKQLYDMGCSEISLGDTIG-VGTPGTVIPMLEAVLDAVPVDKLAVHFH---------DTYGQALSNILAS  313 (398)
Q Consensus       244 r~~~~~l~~~a~~l~~~Gad~I~L~DT~G-~~~P~~v~~lv~~l~~~~p~~~l~~H~H---------nd~GlA~ANalaA  313 (398)
                      ..+++++.+.++.+.+.|+++|+|.+-.. ...+..+.++++.+++..|.  +.+|+=         ...|+...-.+..
T Consensus        35 ~ls~eeI~~~~~~~~~~G~~~i~l~gg~~~~~~~~~~~~i~~~Ik~~~~~--i~~~~~s~~e~~~~~~~~g~~~~e~l~~  112 (309)
T TIGR00423        35 VLSLEEILEKVKEAVAKGATEVCIQGGLNPQLDIEYYEELFRAIKQEFPD--VHIHAFSPMEVYFLAKNEGLSIEEVLKR  112 (309)
T ss_pred             cCCHHHHHHHHHHHHHCCCCEEEEecCCCCCCCHHHHHHHHHHHHHHCCC--ceEEecCHHHHHHHHHHcCCCHHHHHHH
Confidence            46889999999999999999999984322 24557789999999998874  444421         2456666666666


Q ss_pred             H-HhCCCEEe
Q 015894          314 L-QMGISTVD  322 (398)
Q Consensus       314 l-~aGa~~VD  322 (398)
                      + +||++.+.
T Consensus       113 LkeAGl~~i~  122 (309)
T TIGR00423       113 LKKAGLDSMP  122 (309)
T ss_pred             HHHcCCCcCC
Confidence            6 47998774

This protein family includes the CofH protein of coenzyme F(420) biosynthesis from Methanocaldococcus jannaschii, but appears to hit genomes more broadly than just the subset that make coenzyme F(420), so that narrower group is being built as a separate family.

>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain

Probab=87.31  E-value=33  Score=35.24  Aligned_cols=136  Identities=17%  Similarity=0.134  Sum_probs=81.0

Q ss_pred             HHHHHcCCCEEEEeccC---------chH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-C--CcEEEEEeee---ecC--
Q 015894          179 EAAVAAGAKEVAIFASA---------SES--FSKSNINCTIEDSLIRYRDVALAAREL-S--IPVRGYLSCV---VGC--  239 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~~---------Sd~--~~~~~~~~s~~~~l~~~~~~v~~ak~~-G--~~v~~~l~~~---fg~--  239 (398)
                      ++|.++|.|.|.|...-         |+.  ++...+|-+.++-++.+.++++.+|+. |  +.|.+-++..   -+.  
T Consensus       157 ~ra~~AGfDgVEih~ah~GyLl~qFLSp~~N~RtDeyGGslenR~rf~~eii~~vr~~~g~~f~v~vri~~~~~~~~~~~  236 (382)
T cd02931         157 VIAKEAGFDGVEIHAVHEGYLLDQFTISLFNKRTDKYGGSLENRLRFAIEIVEEIKARCGEDFPVSLRYSVKSYIKDLRQ  236 (382)
T ss_pred             HHHHHcCCCEEEEeccccChHHHHhcCCccCCCCCcCCCCHHHHhHHHHHHHHHHHHhcCCCceEEEEEechhhcccccc
Confidence            46678999998886421         111  223345667788788888888888875 3  3454444420   000  


Q ss_pred             ---C----CCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCc-----------C-CHHHHHHHHHHHHhhCCCCeEE-EEe
Q 015894          240 ---P----VEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGV-----------G-TPGTVIPMLEAVLDAVPVDKLA-VHF  299 (398)
Q Consensus       240 ---~----~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~-----------~-~P~~v~~lv~~l~~~~p~~~l~-~H~  299 (398)
                         |    ..+-.++++..++++.+.++|+|.|.+.-  |.           . .+....++++.+++.+.. |+. ...
T Consensus       237 ~~~~~~~~~~~g~~~e~~~~~~~~l~~~gvD~l~vs~--g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~~-pvi~~G~  313 (382)
T cd02931         237 GALPGEEFQEKGRDLEEGLKAAKILEEAGYDALDVDA--GSYDAWYWNHPPMYQKKGMYLPYCKALKEVVDV-PVIMAGR  313 (382)
T ss_pred             ccccccccccCCCCHHHHHHHHHHHHHhCCCEEEeCC--CCCcccccccCCccCCcchhHHHHHHHHHHCCC-CEEEeCC
Confidence               0    01124678999999999999999998741  21           1 112224567778887643 443 333


Q ss_pred             CCccchHHHHHHHHHHhC-CCEE
Q 015894          300 HDTYGQALSNILASLQMG-ISTV  321 (398)
Q Consensus       300 Hnd~GlA~ANalaAl~aG-a~~V  321 (398)
                      .++    ...+..+++.| +|.|
T Consensus       314 i~~----~~~~~~~l~~g~~D~V  332 (382)
T cd02931         314 MED----PELASEAINEGIADMI  332 (382)
T ss_pred             CCC----HHHHHHHHHcCCCCee
Confidence            333    35566778777 5654

Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.

>PRK07807 inosine 5-monophosphate dehydrogenase; Validated

Probab=87.29  E-value=17  Score=38.75  Aligned_cols=132  Identities=18%  Similarity=0.185  Sum_probs=78.6

Q ss_pred             HHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEE-EeCCHhhHHHHHHcCCCEEEEeccCc
Q 015894          119 VVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPV-LTPNLKGFEAAVAAGAKEVAIFASAS  196 (398)
Q Consensus       119 ~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~-l~~n~~~ie~a~~~Gv~~v~i~~~~S  196 (398)
                      ++..+.++.|.+.|++.|-+-.-....     ....+.++.+| +.|+..+.+ =+-+.++.+.++++|+|.|.+-+..-
T Consensus       226 ~~~~~~a~~Lv~aGvd~i~~D~a~~~~-----~~~~~~i~~ik~~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~g  300 (479)
T PRK07807        226 GDVAAKARALLEAGVDVLVVDTAHGHQ-----EKMLEALRAVRALDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPG  300 (479)
T ss_pred             hhHHHHHHHHHHhCCCEEEEeccCCcc-----HHHHHHHHHHHHHCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCC
Confidence            455689999999999987663211110     12234444555 345554333 23467888899999999998755431


Q ss_pred             hH-HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcc
Q 015894          197 ES-FSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGD  269 (398)
Q Consensus       197 d~-~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~D  269 (398)
                      -+ -.+...+.++ -.+..+.++.+.|++.|..|.   +      +.+-.++..   +++ +.++||+.+.+.-
T Consensus       301 sictt~~~~~~~~-p~~~av~~~~~~~~~~~~~vi---a------~ggi~~~~~---~~~-al~~ga~~v~~g~  360 (479)
T PRK07807        301 AMCTTRMMTGVGR-PQFSAVLECAAAARELGAHVW---A------DGGVRHPRD---VAL-ALAAGASNVMIGS  360 (479)
T ss_pred             cccccccccCCch-hHHHHHHHHHHHHHhcCCcEE---e------cCCCCCHHH---HHH-HHHcCCCeeeccH
Confidence            00 0011234444 356777888888889888764   1      344444544   333 3358999887654

>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed

Probab=87.21  E-value=24  Score=34.58  Aligned_cols=138  Identities=19%  Similarity=0.261  Sum_probs=0.0

Q ss_pred             HHHHHhcCCCEEEEecCCC------CCcccCCCCHHHHHHHHHhc------c----CCcEEEEeCCHhh----HHHHHH-
Q 015894          125 IKLLVSSGLAVVEATSFVS------PKWVPQLADAKDVMAAIQNV------E----GARFPVLTPNLKG----FEAAVA-  183 (398)
Q Consensus       125 a~~L~~aGv~~IEvG~~~~------~~~~p~~~D~~~v~~~i~~~------~----~~~l~~l~~n~~~----ie~a~~-  183 (398)
                      ++.++++|++.|=+|....      |+..+  -+.++++..++.+      |    ++.+.....+..+    ..+..+ 
T Consensus        28 Arl~e~aG~d~i~vGds~~~~~lG~~Dt~~--vtl~em~~h~~~V~r~~~~p~vvaD~pfg~y~~~~~~av~~a~r~~~~  105 (264)
T PRK00311         28 AKLFDEAGVDVILVGDSLGMVVLGYDSTLP--VTLDDMIYHTKAVARGAPRALVVADMPFGSYQASPEQALRNAGRLMKE  105 (264)
T ss_pred             HHHHHHcCCCEEEECHHHHHHHcCCCCCCC--cCHHHHHHHHHHHHhcCCCCcEEEeCCCCCccCCHHHHHHHHHHHHHH


Q ss_pred             cCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEE--------------EEEeeeecCCCCCCCC--H
Q 015894          184 AGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVR--------------GYLSCVVGCPVEGMVP--P  247 (398)
Q Consensus       184 ~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~--------------~~l~~~fg~~~~~r~~--~  247 (398)
                      +|++-|.+-.+                  ..+.+.|+.+.+.|++|.              ++..       -+|++  .
T Consensus       106 aGa~aVkiEdg------------------~~~~~~I~al~~agIpV~gHiGL~pq~~~~~gg~~i-------~grt~~~a  160 (264)
T PRK00311        106 AGAHAVKLEGG------------------EEVAETIKRLVERGIPVMGHLGLTPQSVNVLGGYKV-------QGRDEEAA  160 (264)
T ss_pred             hCCeEEEEcCc------------------HHHHHHHHHHHHCCCCEeeeecccceeecccCCeee-------ecCCHHHH


Q ss_pred             HHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEE
Q 015894          248 SKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAV  297 (398)
Q Consensus       248 ~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~  297 (398)
                      +.+.+-++++.++||+.|.+.=     .|.   ++++.+.++++...|++
T Consensus       161 ~~~i~ra~a~~eAGA~~i~lE~-----v~~---~~~~~i~~~l~iP~igi  202 (264)
T PRK00311        161 EKLLEDAKALEEAGAFALVLEC-----VPA---ELAKEITEALSIPTIGI  202 (264)
T ss_pred             HHHHHHHHHHHHCCCCEEEEcC-----CCH---HHHHHHHHhCCCCEEEe

>TIGR01334 modD putative molybdenum utilization protein ModD

Probab=87.21  E-value=21  Score=35.22  Aligned_cols=124  Identities=13%  Similarity=0.033  Sum_probs=74.2

Q ss_pred             HHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHH
Q 015894          179 EAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQ  256 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~  256 (398)
                      +.|+.+|-...|.+--...+.++.|.-.-. ...+.+.+.++.+|+.  +..+.+.+           .+.++    +++
T Consensus       140 k~Av~~GGg~~HR~gLsd~ilikdnHi~~~-g~~~~i~~av~~~r~~~~~~kIeVEv-----------~tlee----a~e  203 (277)
T TIGR01334       140 VKAVLAAGGVIHRIGLSETLLVFANHRTFL-NDNFDWGGAIGRLKQTAPERKITVEA-----------DTIEQ----ALT  203 (277)
T ss_pred             HHHHHhCCCcCeecCCchhheehHHHHHHh-CCcccHHHHHHHHHHhCCCCCEEEEC-----------CCHHH----HHH
Confidence            467778876666543222333333211000 0001344566666665  33343211           13333    555


Q ss_pred             HHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccc
Q 015894          257 LYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVS  326 (398)
Q Consensus       257 l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~  326 (398)
                      +.++|+|.|-|-    -++|+++.+.++.+++..|...+++=+    |.-..|..+=...|+|+|-++-.
T Consensus       204 a~~~GaDiI~lD----n~~~e~l~~~v~~l~~~~~~~~leasG----GI~~~ni~~ya~~GvD~is~gal  265 (277)
T TIGR01334       204 VLQASPDILQLD----KFTPQQLHHLHERLKFFDHIPTLAAAG----GINPENIADYIEAGIDLFITSAP  265 (277)
T ss_pred             HHHcCcCEEEEC----CCCHHHHHHHHHHHhccCCCEEEEEEC----CCCHHHHHHHHhcCCCEEEeCcc
Confidence            668999998776    589999999999998656666666654    55567777777899999866543

The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.

>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase

Probab=87.20  E-value=14  Score=36.65  Aligned_cols=208  Identities=13%  Similarity=0.111  Sum_probs=114.6

Q ss_pred             HHHHHHhcCCCEEEEecCC-C-CCcccC--CCCHHHHHHHHHhccC-CcEEEEeC---------CH-hhHHHHHHcCCCE
Q 015894          124 LIKLLVSSGLAVVEATSFV-S-PKWVPQ--LADAKDVMAAIQNVEG-ARFPVLTP---------NL-KGFEAAVAAGAKE  188 (398)
Q Consensus       124 ia~~L~~aGv~~IEvG~~~-~-~~~~p~--~~D~~~v~~~i~~~~~-~~l~~l~~---------n~-~~ie~a~~~Gv~~  188 (398)
                      =++...++|++.|=++++. + .-.+|.  +-+.++++..++++.+ +.+.+++-         |. +-++...++|+..
T Consensus        27 SAri~e~aGf~ai~~ss~~va~slG~pD~g~l~~~e~~~~~~~I~~~~~lPv~aD~d~GyG~~~~v~~tV~~~~~aGvag  106 (290)
T TIGR02321        27 VAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTVSIPLIADIDTGFGNAVNVHYVVPQYEAAGASA  106 (290)
T ss_pred             HHHHHHHcCCCEEEECHHHHHHHCCCCCcccCCHHHHHHHHHHHHhccCCCEEEECCCCCCCcHHHHHHHHHHHHcCCeE
Confidence            3566788899999997641 1 122342  2466788888876542 33444432         11 2367778899999


Q ss_pred             EEEeccCchHHHhh---h-cC-CCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC--CCCCHHHHHHHHHHHHhCC
Q 015894          189 VAIFASASESFSKS---N-IN-CTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE--GMVPPSKVAYVSKQLYDMG  261 (398)
Q Consensus       189 v~i~~~~Sd~~~~~---~-~~-~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~--~r~~~~~l~~~a~~l~~~G  261 (398)
                      |+|-+.+.+-..-.   + -. .+.++..++++.+.+. + .+..+.  |..=.   |.  .....+..++=++...++|
T Consensus       107 i~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a-~-~~~d~~--I~ART---Da~~~~~g~deAI~Ra~aY~eAG  179 (290)
T TIGR02321       107 IVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAA-R-ADRDFV--VIARV---EALIAGLGQQEAVRRGQAYEEAG  179 (290)
T ss_pred             EEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHh-C-CCCCEE--EEEEe---ccccccCCHHHHHHHHHHHHHcC
Confidence            99988765432110   0 11 3677777777555443 2 333322  11101   11  1123466666788888999


Q ss_pred             CCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhC-CCEEeeccccCCCCCCCCCCCCC
Q 015894          262 CSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMG-ISTVDSSVSGLGGCPYAKGASGN  340 (398)
Q Consensus       262 ad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aG-a~~VD~Sv~GlGecp~a~graGN  340 (398)
                      ||.|.+.=  +.-+|+++..+++.+..  | +|+-+..=.+..+. ...  .-++| +.+|-.....+        ++-.
T Consensus       180 AD~ifv~~--~~~~~~ei~~~~~~~~~--p-~pv~~~~~~~p~~~-~~~--l~~lg~~~~v~~g~~~~--------~aa~  243 (290)
T TIGR02321       180 ADAILIHS--RQKTPDEILAFVKSWPG--K-VPLVLVPTAYPQLT-EAD--IAALSKVGIVIYGNHAI--------RAAV  243 (290)
T ss_pred             CCEEEecC--CCCCHHHHHHHHHhcCC--C-CCeEEecCCCCCCC-HHH--HHHhcCCcEEEEChHHH--------HHHH
Confidence            99999842  34678888888776642  2 23433220111221 122  33456 56533222222        5556


Q ss_pred             ccHHHHHHHHHhCC
Q 015894          341 VATEDVVYMLNGLG  354 (398)
Q Consensus       341 a~lE~vv~~L~~~G  354 (398)
                      .++++.+..+...|
T Consensus       244 ~a~~~~~~~i~~~g  257 (290)
T TIGR02321       244 GAVREVFARIRRDG  257 (290)
T ss_pred             HHHHHHHHHHHHcC
Confidence            67777777776544

This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.

>PRK06843 inosine 5-monophosphate dehydrogenase; Validated

Probab=87.17  E-value=20  Score=37.33  Aligned_cols=132  Identities=11%  Similarity=0.115  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEE-EeCCHhhHHHHHHcCCCEEEEeccCc
Q 015894          119 VVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPV-LTPNLKGFEAAVAAGAKEVAIFASAS  196 (398)
Q Consensus       119 ~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~-l~~n~~~ie~a~~~Gv~~v~i~~~~S  196 (398)
                      .+-.+.++.|.++|+|.|-+-.-...     -....+.++.++ +.|+..+.+ -+.+.++.+.+.++|+|.|.+-...-
T Consensus       152 ~~~~~~v~~lv~aGvDvI~iD~a~g~-----~~~~~~~v~~ik~~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG~g~G  226 (404)
T PRK06843        152 IDTIERVEELVKAHVDILVIDSAHGH-----STRIIELVKKIKTKYPNLDLIAGNIVTKEAALDLISVGADCLKVGIGPG  226 (404)
T ss_pred             HHHHHHHHHHHhcCCCEEEEECCCCC-----ChhHHHHHHHHHhhCCCCcEEEEecCCHHHHHHHHHcCCCEEEECCCCC
Confidence            44678999999999998876321110     012334555555 356765433 45688899999999999998643211


Q ss_pred             hHHH-hhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcc
Q 015894          197 ESFS-KSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGD  269 (398)
Q Consensus       197 d~~~-~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~D  269 (398)
                      -++. +...+.... .+..+..+.+.+++.+++|-   .      +.+-.++..+.+    +.++||+.+.+.-
T Consensus       227 s~c~tr~~~g~g~p-~ltai~~v~~~~~~~~vpVI---A------dGGI~~~~Di~K----ALalGA~aVmvGs  286 (404)
T PRK06843        227 SICTTRIVAGVGVP-QITAICDVYEVCKNTNICII---A------DGGIRFSGDVVK----AIAAGADSVMIGN  286 (404)
T ss_pred             cCCcceeecCCCCC-hHHHHHHHHHHHhhcCCeEE---E------eCCCCCHHHHHH----HHHcCCCEEEEcc
Confidence            0000 111122111 23344445566666676653   1      334345554333    3459999887654

>PLN02389 biotin synthase

Probab=87.17  E-value=13  Score=38.40  Aligned_cols=23  Identities=17%  Similarity=0.349  Sum_probs=12.1

Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEc
Q 015894          246 PPSKVAYVSKQLYDMGCSEISLG  268 (398)
Q Consensus       246 ~~~~l~~~a~~l~~~Gad~I~L~  268 (398)
                      +++.+++.++.+.+.|+.+|++.
T Consensus       117 s~EeIl~~a~~~~~~G~~~~~iv  139 (379)
T PLN02389        117 SKDDVLEAAKRAKEAGSTRFCMG  139 (379)
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEE
Confidence            45555555555555555555553

>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily

Probab=87.15  E-value=9.7  Score=36.17  Aligned_cols=12  Identities=25%  Similarity=0.321  Sum_probs=5.5

Q ss_pred             HHHHHHHhCCCc
Q 015894          217 DVALAARELSIP  228 (398)
Q Consensus       217 ~~v~~ak~~G~~  228 (398)
                      ++++...+.|+.
T Consensus        23 ~i~~~L~~~GV~   34 (265)
T cd03174          23 EIAEALDEAGVD   34 (265)
T ss_pred             HHHHHHHHcCCC
Confidence            334444455554

The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".

>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway

Probab=87.07  E-value=28  Score=33.91  Aligned_cols=146  Identities=18%  Similarity=0.246  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEecCC------CCCcccCCCCHHHHHHHHHhcc-CCcEE-EEe--C-----C-Hhh-H--
Q 015894          118 AVVKVELIKLLVSSGLAVVEATSFV------SPKWVPQLADAKDVMAAIQNVE-GARFP-VLT--P-----N-LKG-F--  178 (398)
Q Consensus       118 ~~~k~~ia~~L~~aGv~~IEvG~~~------~~~~~p~~~D~~~v~~~i~~~~-~~~l~-~l~--~-----n-~~~-i--  178 (398)
                      +.--.--++.++++|++.|=+|...      .|+..  .-+.++++..++.+. .+... +.+  +     + .++ +  
T Consensus        18 ~ayD~~sA~l~e~aG~d~i~vGds~~~~~lG~pDt~--~vtl~em~~~~~~V~r~~~~p~viaD~~fg~y~~~~~~av~~   95 (254)
T cd06557          18 TAYDYPTAKLADEAGVDVILVGDSLGMVVLGYDSTL--PVTLDEMIYHTRAVRRGAPRALVVADMPFGSYQTSPEQALRN   95 (254)
T ss_pred             eCCCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCC--CcCHHHHHHHHHHHHhcCCCCeEEEeCCCCcccCCHHHHHHH
Confidence            3333456788899999999888432      13221  235677776666432 22222 112  2     2 222 2  


Q ss_pred             -HHHH-HcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeee------ec-CCCCCCCC--H
Q 015894          179 -EAAV-AAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCV------VG-CPVEGMVP--P  247 (398)
Q Consensus       179 -e~a~-~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~------fg-~~~~~r~~--~  247 (398)
                       .+.. ++|++-|.+-.+                  ..+.+.|+.+++.|++|.++|-..      +| .-..+|++  .
T Consensus        96 a~r~~~~aGa~aVkiEd~------------------~~~~~~I~al~~agipV~gHiGL~pq~~~~~gg~~~~grt~~~a  157 (254)
T cd06557          96 AARLMKEAGADAVKLEGG------------------AEVAETIRALVDAGIPVMGHIGLTPQSVNQLGGYKVQGKTEEEA  157 (254)
T ss_pred             HHHHHHHhCCeEEEEcCc------------------HHHHHHHHHHHHcCCCeeccccccceeeeccCCceeccCCHHHH
Confidence             2334 499999999754                  134466777788898776443321      11 01123444  3


Q ss_pred             HHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCC
Q 015894          248 SKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVP  291 (398)
Q Consensus       248 ~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p  291 (398)
                      +.+.+-++.+.++||+.|.+.=     .|.   ++++.+.++++
T Consensus       158 ~~~i~ra~a~~~AGA~~i~lE~-----v~~---~~~~~i~~~v~  193 (254)
T cd06557         158 ERLLEDALALEEAGAFALVLEC-----VPA---ELAKEITEALS  193 (254)
T ss_pred             HHHHHHHHHHHHCCCCEEEEcC-----CCH---HHHHHHHHhCC
Confidence            5666778888899999999864     343   35666666654

Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.

>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated

Probab=87.05  E-value=26  Score=32.73  Aligned_cols=160  Identities=17%  Similarity=0.076  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEE--EeCCHhhHHHHHHcCCCEEEEeccCc
Q 015894          119 VVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPV--LTPNLKGFEAAVAAGAKEVAIFASAS  196 (398)
Q Consensus       119 ~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~n~~~ie~a~~~Gv~~v~i~~~~S  196 (398)
                      .+-+++++.+.+.|++.+-+.-..... ...-.+.+ +.+.+.+..+.++.+  -+++.++++.+.+.|++.|.+-... 
T Consensus        30 ~~~~~~a~~~~~~g~~~i~v~dld~~~-~g~~~~~~-~i~~i~~~~~~pv~~~GGI~~~ed~~~~~~~Ga~~vilg~~~-  106 (233)
T PRK00748         30 DDPVAQAKAWEDQGAKWLHLVDLDGAK-AGKPVNLE-LIEAIVKAVDIPVQVGGGIRSLETVEALLDAGVSRVIIGTAA-  106 (233)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEeCCccc-cCCcccHH-HHHHHHHHCCCCEEEcCCcCCHHHHHHHHHcCCCEEEECchH-
Confidence            356889999999999998886421100 00112233 333343333444433  4478999999999999987542221 


Q ss_pred             hHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEE----eeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCc-
Q 015894          197 ESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYL----SCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTI-  271 (398)
Q Consensus       197 d~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l----~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~-  271 (398)
                        +          +..+.+.++++..++. +.+...+    ....|  +. ..+...+.++++.+.+.|++.|.+-|.. 
T Consensus       107 --l----------~~~~~l~ei~~~~~~~-i~vsid~k~~~v~~~g--~~-~~~~~~~~e~~~~~~~~g~~~ii~~~~~~  170 (233)
T PRK00748        107 --V----------KNPELVKEACKKFPGK-IVVGLDARDGKVATDG--WL-ETSGVTAEDLAKRFEDAGVKAIIYTDISR  170 (233)
T ss_pred             --H----------hCHHHHHHHHHHhCCC-ceeeeeccCCEEEEcc--Ce-ecCCCCHHHHHHHHHhcCCCEEEEeeecC
Confidence              1          1112233333332221 2221110    00000  00 0112344567888889999976665443 


Q ss_pred             -CcCCHHHHHHHHHHHHhhCCCCeEEEEe
Q 015894          272 -GVGTPGTVIPMLEAVLDAVPVDKLAVHF  299 (398)
Q Consensus       272 -G~~~P~~v~~lv~~l~~~~p~~~l~~H~  299 (398)
                       |...-. -.++++.+++..+ .|+-..+
T Consensus       171 ~g~~~G~-d~~~i~~l~~~~~-ipvia~G  197 (233)
T PRK00748        171 DGTLSGP-NVEATRELAAAVP-IPVIASG  197 (233)
T ss_pred             cCCcCCC-CHHHHHHHHHhCC-CCEEEeC
Confidence             333321 2456677776655 4555543

>PRK13210 putative L-xylulose 5-phosphate 3-epimerase; Reviewed

Probab=87.02  E-value=24  Score=33.83  Aligned_cols=121  Identities=17%  Similarity=0.080  Sum_probs=59.2

Q ss_pred             hhHHHHHHcCCCEEEEeccCchHHHh-hhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEee------eecCCCCC--CCC
Q 015894          176 KGFEAAVAAGAKEVAIFASASESFSK-SNINCTIEDSLIRYRDVALAARELSIPVRGYLSC------VVGCPVEG--MVP  246 (398)
Q Consensus       176 ~~ie~a~~~Gv~~v~i~~~~Sd~~~~-~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~------~fg~~~~~--r~~  246 (398)
                      +.++.+.++|.+.|-+...  +.+.. ....++.    ..+.++.+.+++.|+.+.. ++.      .++.++..  ...
T Consensus        20 e~~~~~~~~G~~~iEl~~~--~~~~~~~~~~~~~----~~~~~l~~~l~~~Gl~i~~-~~~~~~~~~~~~~~d~~~r~~~   92 (284)
T PRK13210         20 ERLVFAKELGFDFVEMSVD--ESDERLARLDWSK----EERLSLVKAIYETGVRIPS-MCLSGHRRFPFGSRDPATRERA   92 (284)
T ss_pred             HHHHHHHHcCCCeEEEecC--CcccccccccCCH----HHHHHHHHHHHHcCCCceE-EecccccCcCCCCCCHHHHHHH
Confidence            3567778888888777533  11110 0112232    2244556677788887753 111      01111100  001


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEccCcC---cCCHHHHHHHHHHHHhhC-----CCCeEEEEeCCcc
Q 015894          247 PSKVAYVSKQLYDMGCSEISLGDTIG---VGTPGTVIPMLEAVLDAV-----PVDKLAVHFHDTY  303 (398)
Q Consensus       247 ~~~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~lv~~l~~~~-----p~~~l~~H~Hnd~  303 (398)
                      .+++.+.++.+.++|++.|++.....   ...+.....+++.+++..     -++.|.+|.|.+.
T Consensus        93 ~~~~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~~~~  157 (284)
T PRK13210         93 LEIMKKAIRLAQDLGIRTIQLAGYDVYYEEKSEETRQRFIEGLAWAVEQAAAAQVMLAVEIMDTP  157 (284)
T ss_pred             HHHHHHHHHHHHHhCCCEEEECCcccccccccHHHHHHHHHHHHHHHHHHHHhCCEEEEEecCcc
Confidence            24455667777778888887752111   112233444444444321     2467777777543

>PRK02227 hypothetical protein; Provisional

Probab=87.02  E-value=4.7  Score=38.91  Aligned_cols=147  Identities=14%  Similarity=0.059  Sum_probs=88.1

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHH-------Hh-ccCCcEEEEeC---------CH-hh
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAI-------QN-VEGARFPVLTP---------NL-KG  177 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i-------~~-~~~~~l~~l~~---------n~-~~  177 (398)
                      +.......-+.....+|+++|-+|.+...       +.++.++.+       +. .++.++.+...         .. .-
T Consensus        64 ~~p~~~~~aa~~~a~~GvDyVKvGl~~~~-------~~~~~~~~~~~v~~a~~~~~~~~~vVav~yaD~~r~~~~~~~~l  136 (238)
T PRK02227         64 YKPGTISLAALGAAATGADYVKVGLYGGK-------TAEEAVEVMKAVVRAVKDLDPGKIVVAAGYADAHRVGSVSPLSL  136 (238)
T ss_pred             CCchHHHHHHHHHHhhCCCEEEEcCCCCC-------cHHHHHHHHHHHHHhhhhcCCCCeEEEEEecccccccCCChHHH
Confidence            34466677778889999999999987432       122222222       21 23444443221         11 22


Q ss_pred             HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894          178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL  257 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l  257 (398)
                      .+.+.++|.+.+.+     |...|..-+..---..+.+.++++.++++|+..-  +        ++-...+.    +..+
T Consensus       137 ~~~a~~aGf~g~Ml-----DTa~Kdg~~Lfd~l~~~~L~~Fv~~ar~~Gl~~g--L--------AGSL~~~d----ip~L  197 (238)
T PRK02227        137 PAIAADAGFDGAML-----DTAIKDGKSLFDHMDEEELAEFVAEARSHGLMSA--L--------AGSLKFED----IPAL  197 (238)
T ss_pred             HHHHHHcCCCEEEE-----ecccCCCcchHhhCCHHHHHHHHHHHHHcccHhH--h--------cccCchhh----HHHH
Confidence            46778899998877     3333332222222235667889999999999753  2        22222333    3345


Q ss_pred             HhCCCCEEE------Ec-cCcCcCCHHHHHHHHHHHHh
Q 015894          258 YDMGCSEIS------LG-DTIGVGTPGTVIPMLEAVLD  288 (398)
Q Consensus       258 ~~~Gad~I~------L~-DT~G~~~P~~v~~lv~~l~~  288 (398)
                      ...++|.+.      -. |-.|.+.|+.|.++.+.+..
T Consensus       198 ~~l~pD~lGfRgavC~g~dR~~~id~~~V~~~~~~l~~  235 (238)
T PRK02227        198 KRLGPDILGVRGAVCGGGDRTGRIDPELVAELREALRA  235 (238)
T ss_pred             HhcCCCEEEechhccCCCCcccccCHHHHHHHHHHhhc
Confidence            667777653      23 47899999999998887764

>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid)

Probab=86.97  E-value=5.6  Score=38.99  Aligned_cols=81  Identities=14%  Similarity=0.191  Sum_probs=66.4

Q ss_pred             CCCCHHHHHHHHHHHHhC-CCCEEEEccCcCcC---CHHHHHHHHHHHHhhCC-CCeEEEEe-CCccchHHHHHHHHHHh
Q 015894          243 GMVPPSKVAYVSKQLYDM-GCSEISLGDTIGVG---TPGTVIPMLEAVLDAVP-VDKLAVHF-HDTYGQALSNILASLQM  316 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~-Gad~I~L~DT~G~~---~P~~v~~lv~~l~~~~p-~~~l~~H~-Hnd~GlA~ANalaAl~a  316 (398)
                      +..|.+-+.++++.+.+. |++.|.++-|+|-.   +.++-.++++...+... .+++-++. +++.--++..+..|.++
T Consensus        16 g~iD~~~~~~~i~~l~~~~Gv~gi~~~GstGE~~~Lt~~Er~~~~~~~~~~~~~~~~viagv~~~~~~~ai~~a~~a~~~   95 (288)
T cd00954          16 GEINEDVLRAIVDYLIEKQGVDGLYVNGSTGEGFLLSVEERKQIAEIVAEAAKGKVTLIAHVGSLNLKESQELAKHAEEL   95 (288)
T ss_pred             CCCCHHHHHHHHHHHHhcCCCCEEEECcCCcCcccCCHHHHHHHHHHHHHHhCCCCeEEeccCCCCHHHHHHHHHHHHHc
Confidence            578899999999999999 99999999999854   55666777777776654 35777777 78888899999999999


Q ss_pred             CCCEEee
Q 015894          317 GISTVDS  323 (398)
Q Consensus       317 Ga~~VD~  323 (398)
                      ||+.|=.
T Consensus        96 Gad~v~~  102 (288)
T cd00954          96 GYDAISA  102 (288)
T ss_pred             CCCEEEE
Confidence            9997754

It has a widespread application as biocatalyst for the synthesis of sialic acid and its derivatives. This enzyme has been shown to be quite specific for pyruvate as the donor, but flexible to a variety of D- and, to some extent, L-hexoses and pentoses as acceptor substrates. NAL is member of dihydrodipicolinate synthase family that comprises several pyruvate-dependent class I aldolases.

>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed

Probab=86.96  E-value=19  Score=40.38  Aligned_cols=134  Identities=15%  Similarity=0.133  Sum_probs=81.3

Q ss_pred             HHHHHcCCCEEEEecc--------CchH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-C--CcEEEEEeeeecCCCCCCC
Q 015894          179 EAAVAAGAKEVAIFAS--------ASES--FSKSNINCTIEDSLIRYRDVALAAREL-S--IPVRGYLSCVVGCPVEGMV  245 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~--------~Sd~--~~~~~~~~s~~~~l~~~~~~v~~ak~~-G--~~v~~~l~~~fg~~~~~r~  245 (398)
                      ++|.++|.|.|.|...        +|+.  ..+..+|-+.++-+..+.++++.+|+. |  +.|.+-++.. + ...+-.
T Consensus       558 ~~a~~aGfDgveih~ahGyLl~qFlsp~~N~RtD~yGGslenR~r~~~eiv~~ir~~~~~~~~v~~ri~~~-~-~~~~g~  635 (765)
T PRK08255        558 RRAAEAGFDWLELHCAHGYLLSSFISPLTNQRTDEYGGSLENRLRYPLEVFRAVRAVWPAEKPMSVRISAH-D-WVEGGN  635 (765)
T ss_pred             HHHHHcCCCEEEEecccchHHHHhcCCCCCCCCCCCCCCHHHHhHHHHHHHHHHHHhcCCCCeeEEEEccc-c-ccCCCC
Confidence            3567799999988654        2443  344556678887788888888888875 3  4455445531 1 011235


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEccCcCcCC--------HHHHHHHHHHHHhhCCCCeEEEE-eCCccchHHHHHHHHHHh
Q 015894          246 PPSKVAYVSKQLYDMGCSEISLGDTIGVGT--------PGTVIPMLEAVLDAVPVDKLAVH-FHDTYGQALSNILASLQM  316 (398)
Q Consensus       246 ~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~--------P~~v~~lv~~l~~~~p~~~l~~H-~Hnd~GlA~ANalaAl~a  316 (398)
                      +++...++++.+.+.|+|.|.+.  .|...        |.....+.+.+|+.+. +|+..- ..++    ...+..+++.
T Consensus       636 ~~~~~~~~~~~l~~~g~d~i~vs--~g~~~~~~~~~~~~~~~~~~~~~ik~~~~-~pv~~~G~i~~----~~~a~~~l~~  708 (765)
T PRK08255        636 TPDDAVEIARAFKAAGADLIDVS--SGQVSKDEKPVYGRMYQTPFADRIRNEAG-IATIAVGAISE----ADHVNSIIAA  708 (765)
T ss_pred             CHHHHHHHHHHHHhcCCcEEEeC--CCCCCcCCCCCcCccccHHHHHHHHHHcC-CEEEEeCCCCC----HHHHHHHHHc
Confidence            67888999999999999999884  12111        1112345667777664 344333 3333    2445566666


Q ss_pred             C-CCEE
Q 015894          317 G-ISTV  321 (398)
Q Consensus       317 G-a~~V  321 (398)
                      | +|.|
T Consensus       709 g~~D~v  714 (765)
T PRK08255        709 GRADLC  714 (765)
T ss_pred             CCccee
Confidence            6 5554

>PRK09197 fructose-bisphosphate aldolase; Provisional

Probab=86.77  E-value=9.5  Score=38.90  Aligned_cols=120  Identities=15%  Similarity=0.112  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEccCcCc-CC---HHH---------
Q 015894          213 IRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGDTIGV-GT---PGT---------  278 (398)
Q Consensus       213 ~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~DT~G~-~~---P~~---------  278 (398)
                      +.+.++.+.|++.|+-|-+ +.         -.+.+.+..+++.+.+..... |.+....-- +.   -..         
T Consensus         7 ~~~k~~L~~A~~~~yAV~A-fN---------v~n~e~~~avi~AAee~~sPVIlq~s~~~~~~~~g~~~~~~~~~~~~~~   76 (350)
T PRK09197          7 EDYQEMFDRAKENGFALPA-VN---------VVGTDSINAVLEGAAEAKSPVIIQFSNGGAAFIAGKGVKDDGQGAAVLG   76 (350)
T ss_pred             HHHHHHHHHHHHCCceEEE-EE---------eCCHHHHHHHHHHHHHHCCCEEEEcChhhHhhcCCccccccchhhhhhh
Confidence            3466788999999997742 22         146789999999999998774 555443111 11   122         


Q ss_pred             ---HHHHHHHHHhhCCCCeEEEEeCCccchH--HHHHHHHHHhC-----------CC--EEeeccccCCCCCCCCCCCCC
Q 015894          279 ---VIPMLEAVLDAVPVDKLAVHFHDTYGQA--LSNILASLQMG-----------IS--TVDSSVSGLGGCPYAKGASGN  340 (398)
Q Consensus       279 ---v~~lv~~l~~~~p~~~l~~H~Hnd~GlA--~ANalaAl~aG-----------a~--~VD~Sv~GlGecp~a~graGN  340 (398)
                         +..++..+.++.. +|+.+|.  |.|.-  +..+..|+++|           .+  ++|+|-..+-+         |
T Consensus        77 ~~~~~~~v~~~A~~~~-VPValHL--DHg~~~~~~~i~~ai~~g~~~v~~a~~~gftSVMiDgS~lpfEe---------N  144 (350)
T PRK09197         77 AIAGAKHVHEVAEHYG-VPVILHT--DHCAKKLLPWIDGLLDAGEKHFAAGGKPLFSSHMIDLSEEPLEE---------N  144 (350)
T ss_pred             HHHHHHHHHHHHHHCC-CCEEEEC--CCCCCcchHHHHHHHHhhHHHHHhcCCCCceeEEeeCCCCCHHH---------H
Confidence               6677777777774 4677655  55544  55666666665           66  67988877776         6


Q ss_pred             c-cHHHHHHHHHhCC
Q 015894          341 V-ATEDVVYMLNGLG  354 (398)
Q Consensus       341 a-~lE~vv~~L~~~G  354 (398)
                      + -|.+++.+.+..|
T Consensus       145 I~~TkevVe~Ah~~G  159 (350)
T PRK09197        145 IEICSKYLERMAKAG  159 (350)
T ss_pred             HHHHHHHHHHHHHcC
Confidence            5 5667777776443

>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences

Probab=86.71  E-value=15  Score=35.54  Aligned_cols=171  Identities=17%  Similarity=0.250  Sum_probs=84.1

Q ss_pred             HHHHHHHhcCCCEEEEecCC-CCCcccCCCCHHHHHHHHHhccCCcEEEE-----eCCHhh-H---HHHHHc-CCCEEEE
Q 015894          123 ELIKLLVSSGLAVVEATSFV-SPKWVPQLADAKDVMAAIQNVEGARFPVL-----TPNLKG-F---EAAVAA-GAKEVAI  191 (398)
Q Consensus       123 ~ia~~L~~aGv~~IEvG~~~-~~~~~p~~~D~~~v~~~i~~~~~~~l~~l-----~~n~~~-i---e~a~~~-Gv~~v~i  191 (398)
                      .+.+.+..+|.+.+-+..-- .....   .+.+.+++.   ++..++..|     |++.++ +   +.+.+. |.+.|.+
T Consensus        23 ~m~~ai~aSg~evvTvalRR~~~~~~---~~~~~~~~~---i~~~~~~lLPNTaGc~tA~EAv~~A~laRe~~~t~wIKL   96 (247)
T PF05690_consen   23 VMREAIEASGAEVVTVALRRVNLGSK---PGGDNILDY---IDRSGYTLLPNTAGCRTAEEAVRTARLAREAFGTNWIKL   96 (247)
T ss_dssp             HHHHHHHHTT-SEEEEECCGSTTTS----TTCHHCCCC---TTCCTSEEEEE-TT-SSHHHHHHHHHHHHHTTS-SEEEE
T ss_pred             HHHHHHHHhCCcEEEEEEecccCCCC---CCCccHHHH---hcccCCEECCcCCCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence            45678899999999887521 11100   011222222   222222222     344332 3   445564 6789998


Q ss_pred             eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE-EEccC
Q 015894          192 FASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEI-SLGDT  270 (398)
Q Consensus       192 ~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I-~L~DT  270 (398)
                      -+--.+..+.-       +.++.+ ++.+...+.|+.|-+|.+     +     |+    -+++++.++||..+ -++--
T Consensus        97 EVi~D~~~L~P-------D~~etl-~Aae~Lv~eGF~VlPY~~-----~-----D~----v~akrL~d~GcaavMPlgsP  154 (247)
T PF05690_consen   97 EVIGDDKTLLP-------DPIETL-KAAEILVKEGFVVLPYCT-----D-----DP----VLAKRLEDAGCAAVMPLGSP  154 (247)
T ss_dssp             --BS-TTT--B--------HHHHH-HHHHHHHHTT-EEEEEE------S------H----HHHHHHHHTT-SEBEEBSSS
T ss_pred             EEeCCCCCcCC-------ChhHHH-HHHHHHHHCCCEEeecCC-----C-----CH----HHHHHHHHCCCCEEEecccc
Confidence            76655543222       333333 233444467999987765     1     23    47899999999875 44555


Q ss_pred             cCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHH-HHHHHHHHhCCCE--Eeeccc
Q 015894          271 IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQAL-SNILASLQMGIST--VDSSVS  326 (398)
Q Consensus       271 ~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~-ANalaAl~aGa~~--VD~Sv~  326 (398)
                      +|...-..-...++.++++++ +|+-+    |-|++. +-+-.|++.|++-  |+++|.
T Consensus       155 IGSg~Gi~n~~~l~~i~~~~~-vPvIv----DAGiG~pSdaa~AMElG~daVLvNTAiA  208 (247)
T PF05690_consen  155 IGSGRGIQNPYNLRIIIERAD-VPVIV----DAGIGTPSDAAQAMELGADAVLVNTAIA  208 (247)
T ss_dssp             TTT---SSTHHHHHHHHHHGS-SSBEE----ES---SHHHHHHHHHTT-SEEEESHHHH
T ss_pred             cccCcCCCCHHHHHHHHHhcC-CcEEE----eCCCCCHHHHHHHHHcCCceeehhhHHh
Confidence            544433333344555555552 45555    568774 4577899999995  477776

ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.

>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II

Probab=86.68  E-value=36  Score=33.92  Aligned_cols=164  Identities=15%  Similarity=0.162  Sum_probs=91.4

Q ss_pred             HHHHHHHHhcCC-CEEEEecCCCCCcccCCCCHHHH---HHHHHhccCCcEE----EEeCCH-hhHHHHHHcCCCEEEEe
Q 015894          122 VELIKLLVSSGL-AVVEATSFVSPKWVPQLADAKDV---MAAIQNVEGARFP----VLTPNL-KGFEAAVAAGAKEVAIF  192 (398)
Q Consensus       122 ~~ia~~L~~aGv-~~IEvG~~~~~~~~p~~~D~~~v---~~~i~~~~~~~l~----~l~~n~-~~ie~a~~~Gv~~v~i~  192 (398)
                      -+++-+..++|. -.|-.++.          .++++   ++.++...+..+.    .+.+.. +.++.+++.|++.|.+.
T Consensus        25 ~~la~avs~aGglG~l~~~~~----------~~~~l~~~i~~~~~~t~~pfgvn~~~~~~~~~~~~~~~~~~~v~~v~~~   94 (307)
T TIGR03151        25 GSLAAAVSNAGGLGIIGAGNA----------PPDVVRKEIRKVKELTDKPFGVNIMLLSPFVDELVDLVIEEKVPVVTTG   94 (307)
T ss_pred             HHHHHHHHhCCCcceeccccC----------CHHHHHHHHHHHHHhcCCCcEEeeecCCCCHHHHHHHHHhCCCCEEEEc
Confidence            467777777763 33333221          22333   4444443332222    223443 34677889999988763


Q ss_pred             ccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc--cC
Q 015894          193 ASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG--DT  270 (398)
Q Consensus       193 ~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~--DT  270 (398)
                      ...            +       .+.++..|+.|..|.+.+.           +.    +.++.+.++|+|.|.+-  +.
T Consensus        95 ~g~------------p-------~~~i~~lk~~g~~v~~~v~-----------s~----~~a~~a~~~GaD~Ivv~g~ea  140 (307)
T TIGR03151        95 AGN------------P-------GKYIPRLKENGVKVIPVVA-----------SV----ALAKRMEKAGADAVIAEGMES  140 (307)
T ss_pred             CCC------------c-------HHHHHHHHHcCCEEEEEcC-----------CH----HHHHHHHHcCCCEEEEECccc
Confidence            221            1       1356777888987653221           23    34677888999998762  33


Q ss_pred             cCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE--eeccccCCCCCC
Q 015894          271 IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV--DSSVSGLGGCPY  333 (398)
Q Consensus       271 ~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V--D~Sv~GlGecp~  333 (398)
                      -|...+.....++..+++.++ +||-.-+.-..+-.   +.+|+..||+.|  -+.+..--||+.
T Consensus       141 gGh~g~~~~~~ll~~v~~~~~-iPviaaGGI~~~~~---~~~al~~GA~gV~iGt~f~~t~Es~~  201 (307)
T TIGR03151       141 GGHIGELTTMALVPQVVDAVS-IPVIAAGGIADGRG---MAAAFALGAEAVQMGTRFLCAKECNV  201 (307)
T ss_pred             CCCCCCCcHHHHHHHHHHHhC-CCEEEECCCCCHHH---HHHHHHcCCCEeecchHHhcccccCC
Confidence            343222334677788887764 46666655444444   445556799855  444555556543

This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.

>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain

Probab=86.67  E-value=14  Score=36.55  Aligned_cols=90  Identities=16%  Similarity=0.234  Sum_probs=50.8

Q ss_pred             eC-CHhhHH----HHHHcCCCEEEE--eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecCCCCC
Q 015894          172 TP-NLKGFE----AAVAAGAKEVAI--FASASESFSKSNINCTIEDSLIRYRDVALAAREL-SIPVRGYLSCVVGCPVEG  243 (398)
Q Consensus       172 ~~-n~~~ie----~a~~~Gv~~v~i--~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~~v~~~l~~~fg~~~~~  243 (398)
                      .. +.+++.    .+.+.|++.|.+  .++...  .+.+.+....+..+.+.++++.+|+. .++|.+=+.     |   
T Consensus       108 G~~~~~~~~~~a~~~~~~gad~ielN~sCP~~~--~~~~~G~~l~~~~~~~~~iv~~v~~~~~~Pv~vKl~-----~---  177 (299)
T cd02940         108 CEYNKEDWTELAKLVEEAGADALELNFSCPHGM--PERGMGAAVGQDPELVEEICRWVREAVKIPVIAKLT-----P---  177 (299)
T ss_pred             CCCCHHHHHHHHHHHHhcCCCEEEEECCCCCCC--CCCCCchhhccCHHHHHHHHHHHHHhcCCCeEEECC-----C---
Confidence            44 555543    334468887766  333221  11222222222234455666666653 566654332     2   


Q ss_pred             CCCHHHHHHHHHHHHhCCCCEEEEccCcCc
Q 015894          244 MVPPSKVAYVSKQLYDMGCSEISLGDTIGV  273 (398)
Q Consensus       244 r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~  273 (398)
                        +.+.+.++++.+.+.|++.|.+.+|...
T Consensus       178 --~~~~~~~~a~~~~~~Gadgi~~~Nt~~~  205 (299)
T cd02940         178 --NITDIREIARAAKEGGADGVSAINTVNS  205 (299)
T ss_pred             --CchhHHHHHHHHHHcCCCEEEEeccccc
Confidence              2346788899999999999998777643

DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.

>PTZ00300 pyruvate kinase; Provisional

Probab=86.66  E-value=47  Score=35.19  Aligned_cols=200  Identities=13%  Similarity=0.069  Sum_probs=113.2

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-cCCcEEEEeCCHhhHHHHH--HcCCCEEEE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-EGARFPVLTPNLKGFEAAV--AAGAKEVAI  191 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~~~~l~~l~~n~~~ie~a~--~~Gv~~v~i  191 (398)
                      .++..++..| +...+.|++.|=+.|--++      .|..++.+.+... .++.+.+-.-+.++++..-  -.++|.|.|
T Consensus       144 ~ltekD~~dI-~~ald~gvd~I~~SfVrsa------eDv~~vr~~l~~~~~~~~IiaKIEt~eav~nldeI~~~~DgImV  216 (454)
T PTZ00300        144 AVSAKDCADL-QFGVEQGVDMIFASFIRSA------EQVGEVRKALGAKGGDIMIICKIENHQGVQNIDSIIEESDGIMV  216 (454)
T ss_pred             CCChhhHHHH-HHHHHCCCCEEEECCCCCH------HHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHhCCEEEE
Confidence            4666666665 4556789999887653322      3444555555422 2344444445555554332  267887766


Q ss_pred             eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEE-EEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc-c
Q 015894          192 FASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRG-YLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG-D  269 (398)
Q Consensus       192 ~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~-~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~-D  269 (398)
                      .=  -|.    ......++.....+.+++.|+++|..+-+ +=+.. +.-...+.+..++-+++..+. -|+|.+-|. -
T Consensus       217 aR--GDL----gvei~~e~vp~~Qk~Ii~~~~~~gkpvI~ATQmLe-SM~~~p~PTRAEvsDVanAv~-dG~DavMLS~E  288 (454)
T PTZ00300        217 AR--GDL----GVEIPAEKVVVAQKILISKCNVAGKPVICATQMLE-SMTYNPRPTRAEVSDVANAVF-NGADCVMLSGE  288 (454)
T ss_pred             ec--chh----hhhcChHHHHHHHHHHHHHHHHcCCCEEEECchHH-HHhhCCCCCchhHHHHHHHHH-hCCcEEEEech
Confidence            42  233    22234566666778899999999998742 11111 011112344566666665443 699999884 4


Q ss_pred             CcCcCCHHHHHHHHHHHHhhCCC-C----eEEE---EeCC----ccchHHHHHHHHHHhCCC-EEeeccccCC
Q 015894          270 TIGVGTPGTVIPMLEAVLDAVPV-D----KLAV---HFHD----TYGQALSNILASLQMGIS-TVDSSVSGLG  329 (398)
Q Consensus       270 T~G~~~P~~v~~lv~~l~~~~p~-~----~l~~---H~Hn----d~GlA~ANalaAl~aGa~-~VD~Sv~GlG  329 (398)
                      |+=.-.|.+..++++.+....-. .    .+..   +...    ...+|.+...+|...+++ +|=.|-.|--
T Consensus       289 TA~G~yP~eaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~~ia~sa~~~a~~l~a~aIiv~T~sG~t  361 (454)
T PTZ00300        289 TAKGKYPNEVVQYMARICLEAQSAVNEYVFFNSIKKLQPIPMSAEEAVCSSAVNSVYETKAKALVVLSNTGRS  361 (454)
T ss_pred             hcCCCCHHHHHHHHHHHHHHHHhhhchhhhhhhhhccccCCCChHHHHHHHHHHHHHhCCCCEEEEECCCcHH
Confidence            66666788877777777643210 0    0000   0011    235666777778889997 5566666653

>PRK15108 biotin synthase; Provisional

Probab=86.55  E-value=6.8  Score=39.70  Aligned_cols=115  Identities=16%  Similarity=0.103  Sum_probs=72.5

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHH
Q 015894          206 CTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEA  285 (398)
Q Consensus       206 ~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~  285 (398)
                      ++.++.++    .++.+++.|+.-   ++...+.......+.+++.++++.+.+.|+.   ++-|.|.++++.+.++.++
T Consensus        76 ls~eEI~~----~a~~~~~~G~~~---i~i~~~g~~p~~~~~e~i~~~i~~ik~~~i~---v~~s~G~ls~e~l~~LkeA  145 (345)
T PRK15108         76 MEVEQVLE----SARKAKAAGSTR---FCMGAAWKNPHERDMPYLEQMVQGVKAMGLE---TCMTLGTLSESQAQRLANA  145 (345)
T ss_pred             CCHHHHHH----HHHHHHHcCCCE---EEEEecCCCCCcchHHHHHHHHHHHHhCCCE---EEEeCCcCCHHHHHHHHHc
Confidence            34555544    445666788753   2221221111224568999999988887753   4468999998777776554


Q ss_pred             -HHh------hCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCC
Q 015894          286 -VLD------AVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGG  330 (398)
Q Consensus       286 -l~~------~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGe  330 (398)
                       +..      ..|..-=.+|.+.++.--+.....|.++|...--+-+.|+||
T Consensus       146 Gld~~n~~leT~p~~f~~I~~~~~~~~rl~~i~~a~~~G~~v~sg~i~GlgE  197 (345)
T PRK15108        146 GLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIKVCSGGIVGLGE  197 (345)
T ss_pred             CCCEEeeccccChHhcCCCCCCCCHHHHHHHHHHHHHcCCceeeEEEEeCCC
Confidence             320      012110124566678888888888999999766677999998

>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase

Probab=86.43  E-value=11  Score=37.86  Aligned_cols=71  Identities=14%  Similarity=0.170  Sum_probs=51.6

Q ss_pred             HHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccc
Q 015894          250 VAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVS  326 (398)
Q Consensus       250 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~  326 (398)
                      ..+.++.+.++|++.|.+-=+.|  .+..+.++++.+++.+|.+++.+  +|-  .....+..++++||+.|-+.+.
T Consensus        95 ~~~~~~~l~eagv~~I~vd~~~G--~~~~~~~~i~~ik~~~p~v~Vi~--G~v--~t~~~A~~l~~aGaD~I~vg~g  165 (325)
T cd00381          95 DKERAEALVEAGVDVIVIDSAHG--HSVYVIEMIKFIKKKYPNVDVIA--GNV--VTAEAARDLIDAGADGVKVGIG  165 (325)
T ss_pred             HHHHHHHHHhcCCCEEEEECCCC--CcHHHHHHHHHHHHHCCCceEEE--CCC--CCHHHHHHHHhcCCCEEEECCC
Confidence            45667788889999877633333  55788899999999988666665  222  3446678888999999987543

IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.

>TIGR03699 mena_SCO4550 menaquinone biosynthesis protein, SCO4550 family

Probab=86.42  E-value=6.4  Score=39.45  Aligned_cols=77  Identities=16%  Similarity=0.257  Sum_probs=52.7

Q ss_pred             CCCHHHHHHHHHHHHhCCCCEEEEccCcC-cCCHHHHHHHHHHHHhhCCCCeEEEEe---------CCccchHHHHHHHH
Q 015894          244 MVPPSKVAYVSKQLYDMGCSEISLGDTIG-VGTPGTVIPMLEAVLDAVPVDKLAVHF---------HDTYGQALSNILAS  313 (398)
Q Consensus       244 r~~~~~l~~~a~~l~~~Gad~I~L~DT~G-~~~P~~v~~lv~~l~~~~p~~~l~~H~---------Hnd~GlA~ANalaA  313 (398)
                      ..+++.+.+.++.+.+.|+++|+|.+-.. ...+..+.++++.++++.|.  +.+|.         -...|+-+.-.+..
T Consensus        71 ~ls~eei~~~~~~~~~~G~~~i~l~gG~~p~~~~~~~~~li~~Ik~~~~~--i~~~~~s~~ei~~~~~~~g~~~~e~l~~  148 (340)
T TIGR03699        71 VLSVEEILQKIEELVAYGGTQILLQGGVNPDLGLDYYEDLFRAIKARFPH--IHIHSFSPVEIVYIAKKEGLSLREVLER  148 (340)
T ss_pred             CCCHHHHHHHHHHHHHcCCcEEEEecCCCCCCCHHHHHHHHHHHHHHCCC--cCCCCCCHHHHHHHhccCCCCHHHHHHH
Confidence            46889999999999999999999953211 23445677899999988764  34442         11335544455555


Q ss_pred             H-HhCCCEEe
Q 015894          314 L-QMGISTVD  322 (398)
Q Consensus       314 l-~aGa~~VD  322 (398)
                      + +||++.++
T Consensus       149 Lk~aG~~~~~  158 (340)
T TIGR03699       149 LKEAGLDSIP  158 (340)
T ss_pred             HHHcCCCcCC
Confidence            5 58999776

members of this protein family are involved in menaquinone biosynthesis by an alternate pathway via futalosine.

>TIGR00284 dihydropteroate synthase-related protein

Probab=86.38  E-value=6.9  Score=41.81  Aligned_cols=74  Identities=16%  Similarity=0.176  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccc
Q 015894          247 PSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVS  326 (398)
Q Consensus       247 ~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~  326 (398)
                      .+.+.+.++.+.+.|||.|-|.=-.+.-.|..+...|+.+++... .+|.+-+.|-     .-+.+|+++|+++|+ ++.
T Consensus       164 l~~i~~~A~~~~~~GADIIDIG~~st~p~~~~v~~~V~~l~~~~~-~pISIDT~~~-----~v~eaAL~aGAdiIN-sVs  236 (499)
T TIGR00284       164 EDGIEGLAARMERDGADMVALGTGSFDDDPDVVKEKVKTALDALD-SPVIADTPTL-----DELYEALKAGASGVI-MPD  236 (499)
T ss_pred             hHHHHHHHHHHHHCCCCEEEECCCcCCCcHHHHHHHHHHHHhhCC-CcEEEeCCCH-----HHHHHHHHcCCCEEE-ECC
Confidence            377888899999999999999854444455679999999998753 5788866653     566788999999998 555


Q ss_pred             c
Q 015894          327 G  327 (398)
Q Consensus       327 G  327 (398)
                      |
T Consensus       237 ~  237 (499)
T TIGR00284       237 V  237 (499)
T ss_pred             c
Confidence            5

This protein has been found so far only in the Archaea, and in particular in those archaea that lack a bacterial-type dihydropteroate synthase. The central region of this protein shows considerable homology to the amino-terminal half of dihydropteroate synthases, while the carboxyl-terminal region shows homology to the small, uncharacterized protein slr0651 of Synechocystis PCC6803.

>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase

Probab=86.38  E-value=29  Score=32.50  Aligned_cols=180  Identities=16%  Similarity=0.089  Sum_probs=90.7

Q ss_pred             HHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEE--EEeCCHhhHHHHHHcCCCEEEEeccCc
Q 015894          119 VVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFP--VLTPNLKGFEAAVAAGAKEVAIFASAS  196 (398)
Q Consensus       119 ~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~--~l~~n~~~ie~a~~~Gv~~v~i~~~~S  196 (398)
                      .+-+++++.+.+.|++.+=+--...-. -....+. ++++.+.+..+..+.  .-.++.++++.+.++|++.|-+-..  
T Consensus        28 ~dp~~~a~~~~~~g~~~l~v~dl~~~~-~g~~~~~-~~i~~i~~~~~~pi~~ggGI~~~ed~~~~~~~Ga~~vvlgs~--  103 (230)
T TIGR00007        28 DDPVEAAKKWEEEGAERIHVVDLDGAK-EGGPVNL-PVIKKIVRETGVPVQVGGGIRSLEDVEKLLDLGVDRVIIGTA--  103 (230)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEeCCccc-cCCCCcH-HHHHHHHHhcCCCEEEeCCcCCHHHHHHHHHcCCCEEEEChH--
Confidence            356789999999999876662111000 0011122 344444433333333  3447889999999999998754211  


Q ss_pred             hHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEeeeecC--CCCCC-CCHHHHHHHHHHHHhCCCCEEEEccCc-
Q 015894          197 ESFSKSNINCTIEDSLIRYRDVALAARELSI-PVRGYLSCVVGC--PVEGM-VPPSKVAYVSKQLYDMGCSEISLGDTI-  271 (398)
Q Consensus       197 d~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~-~v~~~l~~~fg~--~~~~r-~~~~~l~~~a~~l~~~Gad~I~L~DT~-  271 (398)
                                    .++....+.+.+++.|. .+.+.+-.--|.  ....+ .+.....++++.+.+.|++.|.+-|-. 
T Consensus       104 --------------~l~d~~~~~~~~~~~g~~~i~~sid~~~~~v~~~g~~~~~~~~~~~~~~~~~~~g~~~ii~~~~~~  169 (230)
T TIGR00007       104 --------------AVENPDLVKELLKEYGPERIVVSLDARGGEVAVKGWLEKSEVSLEELAKRLEELGLEGIIYTDISR  169 (230)
T ss_pred             --------------HhhCHHHHHHHHHHhCCCcEEEEEEEECCEEEEcCCcccCCCCHHHHHHHHHhCCCCEEEEEeecC
Confidence                          11222233455566663 233222210000  00011 112344567888899999987765543 


Q ss_pred             -CcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894          272 -GVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       272 -G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                       |...... .++++.+++..+ +|+..-+=-..-   .-...+.+.||+.|
T Consensus       170 ~g~~~g~~-~~~i~~i~~~~~-ipvia~GGi~~~---~di~~~~~~Gadgv  215 (230)
T TIGR00007       170 DGTLSGPN-FELTKELVKAVN-VPVIASGGVSSI---DDLIALKKLGVYGV  215 (230)
T ss_pred             CCCcCCCC-HHHHHHHHHhCC-CCEEEeCCCCCH---HHHHHHHHCCCCEE
Confidence             3333322 556667766543 455554321111   22223345787754

Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).

>PRK08185 hypothetical protein; Provisional

Probab=86.22  E-value=9.1  Score=37.92  Aligned_cols=102  Identities=11%  Similarity=0.165  Sum_probs=72.6

Q ss_pred             HHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEccCcCcCCHHHHHHHHHHHHhhCCCCe
Q 015894          216 RDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGDTIGVGTPGTVIPMLEAVLDAVPVDK  294 (398)
Q Consensus       216 ~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~  294 (398)
                      +++.+.|++.++-|-. +.         -++.+.+..+++.+.+.+... |.+.-..--..|..+..++..+.++.. +|
T Consensus         2 ~~~L~~A~~~~yaV~A-fN---------~~n~e~~~avi~AAee~~sPvIl~~~~~~~~~~~~~~~~~~~~~a~~~~-vP   70 (283)
T PRK08185          2 KELLKVAKEHQFAVGA-FN---------VADSCFLRAVVEEAEANNAPAIIAIHPNELDFLGDNFFAYVRERAKRSP-VP   70 (283)
T ss_pred             HHHHHHHHHcCceEEE-EE---------eCCHHHHHHHHHHHHHhCCCEEEEeCcchhhhccHHHHHHHHHHHHHCC-CC
Confidence            4667889999987742 22         146788999999999999875 444433322234557778877777764 46


Q ss_pred             EEEEeCCccchHHHHHHHHHHhCCC--EEeeccccCCC
Q 015894          295 LAVHFHDTYGQALSNILASLQMGIS--TVDSSVSGLGG  330 (398)
Q Consensus       295 l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGe  330 (398)
                      +.+|  =|.|.-+.....|+++|.+  ++|.|-..+-+
T Consensus        71 V~lH--LDHg~~~e~i~~ai~~Gf~SVM~D~S~l~~ee  106 (283)
T PRK08185         71 FVIH--LDHGATIEDVMRAIRCGFTSVMIDGSLLPYEE  106 (283)
T ss_pred             EEEE--CCCCCCHHHHHHHHHcCCCEEEEeCCCCCHHH
Confidence            6655  5777788899999999987  66888776655

>PLN02951 Molybderin biosynthesis protein CNX2

Probab=86.18  E-value=22  Score=36.39  Aligned_cols=120  Identities=15%  Similarity=0.139  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC-CCCEEEEccCcCcCCHHHHHHHHHHHHhh-CC
Q 015894          214 RYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM-GCSEISLGDTIGVGTPGTVIPMLEAVLDA-VP  291 (398)
Q Consensus       214 ~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~-Gad~I~L~DT~G~~~P~~v~~lv~~l~~~-~p  291 (398)
                      .+.+.++.+++.|+.. +.++   |.+-.-+   ..+.++++.+.+. |...+.+ .|.|.+.+..+.+    +++. +.
T Consensus        94 ei~~~i~~~~~~Gv~~-I~~t---GGEPllr---~dl~eli~~l~~~~gi~~i~i-tTNG~lL~~~~~~----L~~aGld  161 (373)
T PLN02951         94 EIVRLAGLFVAAGVDK-IRLT---GGEPTLR---KDIEDICLQLSSLKGLKTLAM-TTNGITLSRKLPR----LKEAGLT  161 (373)
T ss_pred             HHHHHHHHHHHCCCCE-EEEE---CCCCcch---hhHHHHHHHHHhcCCCceEEE-eeCcchHHHHHHH----HHhCCCC
Confidence            3344556666778743 1232   3222212   2366677767665 7665665 6889887765443    3332 22


Q ss_pred             CCeEEEEeC-----------CccchHHHHHHHHHHhCCCE--EeeccccCCCCCCCCCCCCC-ccHHHHHHHHHhCCC
Q 015894          292 VDKLAVHFH-----------DTYGQALSNILASLQMGIST--VDSSVSGLGGCPYAKGASGN-VATEDVVYMLNGLGV  355 (398)
Q Consensus       292 ~~~l~~H~H-----------nd~GlA~ANalaAl~aGa~~--VD~Sv~GlGecp~a~graGN-a~lE~vv~~L~~~Gi  355 (398)
                      .+.|.++..           .++...+.+.-+|.++|...  |++++.- |.         | -.+++++..+++.|+
T Consensus       162 ~VnISLDsl~~e~~~~itr~~~~~~vl~~I~~a~~~G~~~vkin~vv~~-g~---------N~~Ei~~li~~a~~~gi  229 (373)
T PLN02951        162 SLNISLDTLVPAKFEFLTRRKGHDRVLESIDTAIELGYNPVKVNCVVMR-GF---------NDDEICDFVELTRDKPI  229 (373)
T ss_pred             eEEEeeccCCHHHHHHHhcCCCHHHHHHHHHHHHHcCCCcEEEEEEecC-CC---------CHHHHHHHHHHHHhCCC
Confidence            344555542           12334566666667788643  4444331 22         2 246667666666664

>PF04551 GcpE: GcpE protein; InterPro: IPR004588 This protein previously of unknown biochemical function is essential in Escherichia coli

Probab=86.17  E-value=43  Score=34.30  Aligned_cols=185  Identities=21%  Similarity=0.247  Sum_probs=92.4

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc--cCCcEEEEe---CCHhhHHHHHHcCCCEEE
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV--EGARFPVLT---PNLKGFEAAVAAGAKEVA  190 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~--~~~~l~~l~---~n~~~ie~a~~~Gv~~v~  190 (398)
                      .+.+..++-+..|.++|.+.+-+..+.       +.+++.+.+..+++  .++.+...+   .+.+=.-.|++. ++.||
T Consensus        28 ~Dv~atv~QI~~L~~aGceivRvavp~-------~~~a~al~~I~~~l~~~g~~iPlVADIHFd~~lAl~a~~~-v~kiR   99 (359)
T PF04551_consen   28 RDVEATVAQIKRLEEAGCEIVRVAVPD-------MEAAEALKEIKKRLRALGSPIPLVADIHFDYRLALEAIEA-VDKIR   99 (359)
T ss_dssp             T-HHHHHHHHHHHHHCT-SEEEEEE-S-------HHHHHHHHHHHHHHHCTT-SS-EEEEESTTCHHHHHHHHC--SEEE
T ss_pred             ccHHHHHHHHHHHHHcCCCEEEEcCCC-------HHHHHHHHHHHHhhccCCCCCCeeeecCCCHHHHHHHHHH-hCeEE
Confidence            456667888899999999999998753       23444333333331  233333333   243333345667 99999


Q ss_pred             EeccCchHHHhhhcC-------CCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCC---C--CCHH----HHHHHH
Q 015894          191 IFASASESFSKSNIN-------CTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEG---M--VPPS----KVAYVS  254 (398)
Q Consensus       191 i~~~~Sd~~~~~~~~-------~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~---r--~~~~----~l~~~a  254 (398)
                      |=-.        |+.       .++   -++++++++.||++|+.++..+.  .|+-...   +  .+++    -..+.+
T Consensus       100 INPG--------Ni~~~~~~~~g~~---~~~~~~vv~~ake~~ipIRIGvN--~GSL~~~~~~ky~~t~~amvesA~~~~  166 (359)
T PF04551_consen  100 INPG--------NIVDEFQEELGSI---REKVKEVVEAAKERGIPIRIGVN--SGSLEKDILEKYGPTPEAMVESALEHV  166 (359)
T ss_dssp             E-TT--------TSS----SS-SS----HHHHHHHHHHHHHHT-EEEEEEE--GGGS-HHHHHHHCHHHHHHHHHHHHHH
T ss_pred             ECCC--------cccccccccccch---HHHHHHHHHHHHHCCCCEEEecc--cccCcHHHHhhccchHHHHHHHHHHHH
Confidence            8322        331       122   35567889999999999997776  3432110   0  1112    222356


Q ss_pred             HHHHhCCCC--EEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchH-HHHHHHHH------HhCC-CEEeec
Q 015894          255 KQLYDMGCS--EISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQA-LSNILASL------QMGI-STVDSS  324 (398)
Q Consensus       255 ~~l~~~Gad--~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA-~ANalaAl------~aGa-~~VD~S  324 (398)
                      +.+.++|.+  .|+++.+    .+..+.+..+.+.+.++ -||++..-. -|.. -...-.|+      .-|+ |.|-+|
T Consensus       167 ~~le~~~f~~iviSlKsS----dv~~~i~ayr~la~~~d-yPLHLGvTE-AG~~~~g~IkSsigiG~LL~~GIGDTIRVS  240 (359)
T PF04551_consen  167 RILEELGFDDIVISLKSS----DVPETIEAYRLLAERMD-YPLHLGVTE-AGTGEDGTIKSSIGIGALLLDGIGDTIRVS  240 (359)
T ss_dssp             HHHHHCT-GGEEEEEEBS----SHHHHHHHHHHHHHH---S-EEEEBSS-EESCHHHHHHHHHHHHHHHHTT--SEEEE-
T ss_pred             HHHHHCCCCcEEEEEEeC----ChHHHHHHHHHHHHhcC-CCeEEeecC-CCCcccchhHHHHHHHHHHHcCCCCEEEEE
Confidence            667778987  4677776    44444444444444443 245443322 2221 22222333      3454 677777


Q ss_pred             ccc
Q 015894          325 VSG  327 (398)
Q Consensus       325 v~G  327 (398)
                      +.+
T Consensus       241 Lt~  243 (359)
T PF04551_consen  241 LTG  243 (359)
T ss_dssp             ECS
T ss_pred             CCC
Confidence            763

It has now been characterised as 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase, which converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4CPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate in the sixth step of nonmevalonate terpenoid biosynthesis. The family is largely restricted to bacteria, where it is widely but not universally distributed. No homology can be detected between this family and other proteins.; GO: 0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity, 0016114 terpenoid biosynthetic process, 0055114 oxidation-reduction process; PDB: 2Y0F_C 3NOY_A.

>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase

Probab=86.15  E-value=76  Score=37.68  Aligned_cols=221  Identities=18%  Similarity=0.188  Sum_probs=0.0

Q ss_pred             HHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccC------CcEEEEeC-CHhh--------------HHH
Q 015894          122 VELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEG------ARFPVLTP-NLKG--------------FEA  180 (398)
Q Consensus       122 ~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~------~~l~~l~~-n~~~--------------ie~  180 (398)
                      .+.++.|.+.|+|.|=+-.         +.|..+...++..+..      ..+.+++. ...+              +..
T Consensus       151 ~eq~~~L~~~GvD~iliET---------i~d~~EakAal~a~~~~~~~~~~~lPv~vS~~~~d~~Gr~~~G~~~~~~~~~  221 (1178)
T TIGR02082       151 TEQAKGLLDGGVDLLLIET---------CFDTLNAKAALFAAETVFEEKGRELPIMISGTIVDTSGRTLSGQTIEAFLTS  221 (1178)
T ss_pred             HHHHHHHHhCCCCEEEEec---------cCCHHHHHHHHHHHHHHHhhcCCCCeEEEEEEEECCCCeeCCCCcHHHHHHH


Q ss_pred             HHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecCCC---CCCCCHHHHHHHHHH
Q 015894          181 AVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAREL-SIPVRGYLSCVVGCPV---EGMVPPSKVAYVSKQ  256 (398)
Q Consensus       181 a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~~v~~~l~~~fg~~~---~~r~~~~~l~~~a~~  256 (398)
                      ....+++.|.+=++..+               +.+...++...+. ...+.++=.  -|-|.   ....+|+++.+.++.
T Consensus       222 l~~~~~~avGlNCs~gP---------------~~m~~~l~~l~~~~~~pi~vyPN--AGlP~~~~~yd~~p~~~a~~~~~  284 (1178)
T TIGR02082       222 LEHAGIDMIGLNCALGP---------------DEMRPHLKHLSEHAEAYVSCHPN--AGLPNAFGEYDLTPDELAKALAD  284 (1178)
T ss_pred             HhcCCCCEEEeCCCCCH---------------HHHHHHHHHHHHhcCceEEEEeC--CCCCCCCCcccCCHHHHHHHHHH


Q ss_pred             HHhC-CCCEEE-EccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeC----------------------------------
Q 015894          257 LYDM-GCSEIS-LGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFH----------------------------------  300 (398)
Q Consensus       257 l~~~-Gad~I~-L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~H----------------------------------  300 (398)
                      +.+. |+..|. -|=|    +|++++.+-++++..-|..+...+.+                                  
T Consensus       285 ~~~~ggv~IIGGCCGT----tPeHI~ala~~l~~~~p~~~~~~~~~~~~s~~~~~~~~~~~~~~~IGEr~N~~G~k~~~~  360 (1178)
T TIGR02082       285 FAAEGGLNIVGGCCGT----TPDHIRAIAEAVKNIKPRQRPVLYEPSRLSGLEAITIAQDSNFVNIGERTNVAGSKKFRR  360 (1178)
T ss_pred             HHHhCCCcEEEecCCC----CHHHHHHHHHHhhcCCCCCCCCcccceeecCceEEeecCCCceEEEeeccchhhhHHHHH


Q ss_pred             ----CccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhC----CCCCccChHHHHHHHHHHH
Q 015894          301 ----DTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGL----GVRTNVDIRKLMIAGDFIC  372 (398)
Q Consensus       301 ----nd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~----Gi~t~iDl~~L~~~~~~v~  372 (398)
                          .|+.-++.-+..-+++||++||+.. |...      ..+-..++.++..+...    .+..-||..+-.-+..-++
T Consensus       361 ~i~~~d~~~a~~~A~~qve~GA~iIDVn~-~~~~------vd~~eem~rvv~~i~~~~~~~~vPlsIDS~~~~v~eaaLk  433 (1178)
T TIGR02082       361 LIIAEDYDEALDIAKQQVENGAQILDINV-DYGM------LDGVAAMKRFLNLLASEPDISTVPLMLDSSEWAVLEAGLK  433 (1178)
T ss_pred             HHHcCCHHHHHHHHHHHHHCCCCEEEECC-CCCC------CCHHHHHHHHHHHHHhccCCCCCeEEEeCCcHHHHHHHHH


Q ss_pred             HHhCCCC
Q 015894          373 KHLGRTS  379 (398)
Q Consensus       373 ~~~g~~~  379 (398)
                      .+-|.++
T Consensus       434 ~~~G~~I  440 (1178)
T TIGR02082       434 CIQGKCI  440 (1178)
T ss_pred             hcCCCCE

S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.

>PRK07535 methyltetrahydrofolate:corrinoid/iron-sulfur protein methyltransferase; Validated

Probab=86.14  E-value=33  Score=33.42  Aligned_cols=121  Identities=18%  Similarity=0.191  Sum_probs=70.7

Q ss_pred             HHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894          179 EAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAREL-SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL  257 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l  257 (398)
                      +..++.|++.|.|-..+           +.++-.+++..+++.+++. +..+.      +   |.  ++++    +++.+
T Consensus        32 ~~~~~~GAdiIDVg~~~-----------~~~eE~~r~~~~v~~l~~~~~~pls------I---DT--~~~~----v~eaa   85 (261)
T PRK07535         32 LKQAEAGADYLDVNAGT-----------AVEEEPETMEWLVETVQEVVDVPLC------I---DS--PNPA----AIEAG   85 (261)
T ss_pred             HHHHHCCCCEEEECCCC-----------CchhHHHHHHHHHHHHHHhCCCCEE------E---eC--CCHH----HHHHH
Confidence            34467899999996553           3345678888888888764 55543      2   22  2343    34444


Q ss_pred             HhC--CCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCc---------cchHHHHHHHHHHhCCC----EEe
Q 015894          258 YDM--GCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDT---------YGQALSNILASLQMGIS----TVD  322 (398)
Q Consensus       258 ~~~--Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd---------~GlA~ANalaAl~aGa~----~VD  322 (398)
                      .++  |++.|  -|..|..  .....++..+++ +...-+..|.|+.         ........-.|.++|+.    ++|
T Consensus        86 L~~~~G~~iI--NsIs~~~--~~~~~~~~l~~~-~g~~vv~m~~~~~g~P~t~~~~~~~l~~~v~~a~~~GI~~~~IilD  160 (261)
T PRK07535         86 LKVAKGPPLI--NSVSAEG--EKLEVVLPLVKK-YNAPVVALTMDDTGIPKDAEDRLAVAKELVEKADEYGIPPEDIYID  160 (261)
T ss_pred             HHhCCCCCEE--EeCCCCC--ccCHHHHHHHHH-hCCCEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHcCCCHhHEEEe
Confidence            444  88864  4555543  112233443433 3322467788754         22333344557789995    789


Q ss_pred             eccccCCC
Q 015894          323 SSVSGLGG  330 (398)
Q Consensus       323 ~Sv~GlGe  330 (398)
                      ..+..+|.
T Consensus       161 Pgi~~~~~  168 (261)
T PRK07535        161 PLVLPLSA  168 (261)
T ss_pred             CCCCcccC
Confidence            98886664

>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria

Probab=86.13  E-value=7  Score=37.36  Aligned_cols=137  Identities=17%  Similarity=0.184  Sum_probs=70.5

Q ss_pred             HHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhcc--CCcEEEEeCCHhhHHHH--HHc-CCC--EEEEec
Q 015894          121 KVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVE--GARFPVLTPNLKGFEAA--VAA-GAK--EVAIFA  193 (398)
Q Consensus       121 k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~--~~~l~~l~~n~~~ie~a--~~~-Gv~--~v~i~~  193 (398)
                      --++++.|..+|++.+-++--..-++.     .+-+.+.++.+.  ++...+..++..+..+.  ++. |++  .+....
T Consensus        64 ~~~~~~~L~~~G~d~vslANNH~~D~G-----~~gl~~Tl~~L~~~gi~~~Gag~~~~~a~~p~i~~~~g~kia~l~~t~  138 (250)
T PF09587_consen   64 PPEILDALKDAGFDVVSLANNHIFDYG-----EEGLLDTLEALDKAGIPYVGAGRNLEEARRPAIIEVNGVKIAFLGYTD  138 (250)
T ss_pred             CHHHHHHHHHcCCCEEEecCCCCcccc-----HHHHHHHHHHHHHCCCcEeECcCChHHhcCeEEEEECCEEEEEEEEEc
Confidence            346699999999999988743222221     233444444332  44455544554433221  122 222  122222


Q ss_pred             cCchHHHhhhcC-------------CCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC
Q 015894          194 SASESFSKSNIN-------------CTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM  260 (398)
Q Consensus       194 ~~Sd~~~~~~~~-------------~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~  260 (398)
                      ..+.........             ......++.+.+.|+.+|+ +-.+.+ ++.=||.+.. ..+.++..++++.+.++
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~r~-~~D~vI-v~~HwG~e~~-~~p~~~q~~~a~~lida  215 (250)
T PF09587_consen  139 GENGYSSANGNRPYGFSYRPDKAGLNPNRPGIERIKEDIREARK-KADVVI-VSLHWGIEYE-NYPTPEQRELARALIDA  215 (250)
T ss_pred             CCCCCccccccccccccccccccccccccchHHHHHHHHHHHhc-CCCEEE-EEeccCCCCC-CCCCHHHHHHHHHHHHc
Confidence            221111111000             0011224667777888884 344432 3333666654 34567888899999999


Q ss_pred             CCCEE
Q 015894          261 GCSEI  265 (398)
Q Consensus       261 Gad~I  265 (398)
                      |||.|
T Consensus       216 GaDiI  220 (250)
T PF09587_consen  216 GADII  220 (250)
T ss_pred             CCCEE
Confidence            99876

Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].

>PLN02433 uroporphyrinogen decarboxylase

Probab=86.04  E-value=5.2  Score=40.31  Aligned_cols=72  Identities=14%  Similarity=0.052  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHhCCCCEEEEcc-CcCcCCHHHHHHHHH--------HHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCC
Q 015894          248 SKVAYVSKQLYDMGCSEISLGD-TIGVGTPGTVIPMLE--------AVLDAVPVDKLAVHFHDTYGQALSNILASLQMGI  318 (398)
Q Consensus       248 ~~l~~~a~~l~~~Gad~I~L~D-T~G~~~P~~v~~lv~--------~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa  318 (398)
                      +.+.++++...++|++.+.+.| +.|.++|.+..+++.        .+++..|+.++.+|.+.+.    ...-.-.+.|+
T Consensus       179 ~~~~~~~~~~ieaGa~~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~~ilh~cG~~----~~~~~~~~~~~  254 (345)
T PLN02433        179 DAVIEYVDYQIDAGAQVVQIFDSWAGHLSPVDFEEFSKPYLEKIVDEVKARHPDVPLILYANGSG----GLLERLAGTGV  254 (345)
T ss_pred             HHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCCH----HHHHHHHhcCC


Q ss_pred             CEEee
Q 015894          319 STVDS  323 (398)
Q Consensus       319 ~~VD~  323 (398)
                      +.+..
T Consensus       255 ~~i~~  259 (345)
T PLN02433        255 DVIGL  259 (345)
T ss_pred             CEEEc

>TIGR00432 arcsn_tRNA_tgt tRNA-guanine transglycosylase, archaeosine-15-forming

Probab=86.04  E-value=11  Score=40.65  Aligned_cols=132  Identities=14%  Similarity=0.158  Sum_probs=82.7

Q ss_pred             HHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCC
Q 015894          182 VAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMG  261 (398)
Q Consensus       182 ~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~G  261 (398)
                      ...|.|++..++-..+.      ..+++++-+.+....+.+++.--...-.-...| .+..|-+.++--.+-++.+.++|
T Consensus         8 ~~iGsDI~~~LD~~t~~------~~~~~~a~~sverT~rwa~~~~~~~~~~~~~l~-giVQGG~~~DLR~~Sa~~l~~~~   80 (540)
T TIGR00432         8 RHIGSDIGTPLDIPTPP------DVDYARAESELEITLERARESIELLEGAENLLN-VPVQGSTHPDLRRFAAGEAAKLG   80 (540)
T ss_pred             HHhCCCEEEECCcCCCC------CCCHHHHHHHHHHHHHHHHHHHHHhhcccCcEE-EEEcCCCCHHHHHHHHHHHHhCC
Confidence            34677877776543322      234445555555555444332100000001112 23445567888888899999999


Q ss_pred             CCEEEEccCcCcCC---HHHHHHHHHHHHhhCC-CCeEEEEeCCccchH-HHHHHHHHHhCCCEEeecc
Q 015894          262 CSEISLGDTIGVGT---PGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQA-LSNILASLQMGISTVDSSV  325 (398)
Q Consensus       262 ad~I~L~DT~G~~~---P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA-~ANalaAl~aGa~~VD~Sv  325 (398)
                      .+.+.|.-.+..+.   +.++.+++..++..+| +.|+++.     |.| ..+.+.++..|+|.+|++.
T Consensus        81 f~gyaIGG~v~~~e~y~~~~l~~iv~~~~~~LP~dkPryL~-----GvG~P~~i~~~V~lGvDlFD~v~  144 (540)
T TIGR00432        81 GDIYPIGAVVPLMEAYRYRDLARVILESRSALPPVEPIHLF-----GCGHPMLFALAVALGCDLFDSAA  144 (540)
T ss_pred             CCEEEEcCcChHhhhccHHHHHHHHHHHHhhCCCCcceeec-----CCCCHHHHHHHHHhCCCcccccH
Confidence            99999887664443   4568888888888887 5566554     444 5688889999999999883

This tRNA-guanine transglycosylase (tgt) differs from the tgt of E. coli and other Bacteria in the site of action and the modification that results. It exchanges 7-cyano-7-deazaguanine (preQ0) with guanine at position 15 of archaeal tRNA; this nucleotide is subsequently converted to archaeosine, found exclusively in the Archaea. This enzyme from Haloferax volcanii has been purified, characterized, and partially sequenced and is the basis for identifying this family. In contrast, bacterial tgt catalyzes the exchange of preQ0 or preQ1 for the guanine base at position 34; this nucleotide is subsequently modified to queuosine. Archeoglobus fulgidus has both enzymes, while some other Archaea have just this one.

>PRK05198 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional

Probab=85.97  E-value=37  Score=33.35  Aligned_cols=177  Identities=12%  Similarity=0.092  Sum_probs=103.2

Q ss_pred             CHHHHHHHHHHHHhcC----CCEEEEecCC-----CCCcccCCC--CHHHHHHHHHhccCCcEEEEeCCHhhHHHHHHcC
Q 015894          117 PAVVKVELIKLLVSSG----LAVVEATSFV-----SPKWVPQLA--DAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAG  185 (398)
Q Consensus       117 ~~~~k~~ia~~L~~aG----v~~IEvG~~~-----~~~~~p~~~--D~~~v~~~i~~~~~~~l~~l~~n~~~ie~a~~~G  185 (398)
                      +.++..++++.|.++|    +..+==++|-     +|...-.+.  +-=++++.+++-.+..+..=+.+..+++.+.+. 
T Consensus        22 s~e~~~~~A~~lk~~~~~~~~~~~fK~sf~KapRTSp~sFqG~G~eeGL~~L~~vk~~~GlpvvTeV~~~~~~~~v~~~-  100 (264)
T PRK05198         22 SRDLALRIAEHLKEITDKLGIPYVFKASFDKANRSSIHSFRGPGLEEGLKILQEVKETFGVPVLTDVHEPEQAAPVAEV-  100 (264)
T ss_pred             CHHHHHHHHHHHHHHHHhcCCCeEEeccccCCCCCCCCCCCCCChHHHHHHHHHHHHHHCCceEEEeCCHHHHHHHHhh-
Confidence            6788899999999854    5544444442     222111111  122334444433455444444577888888887 


Q ss_pred             CCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE
Q 015894          186 AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEI  265 (398)
Q Consensus       186 v~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I  265 (398)
                      +|.+.|-.-..                ++ -++++.+.+.|..|-  |-      ..--.++++++..++.+.+.|-+.|
T Consensus       101 ~DilQIgArn~----------------rn-~~LL~a~g~t~kpV~--lK------rG~~~t~~e~~~aaeyi~~~Gn~~v  155 (264)
T PRK05198        101 VDVLQIPAFLC----------------RQ-TDLLVAAAKTGKVVN--IK------KGQFLAPWDMKNVVDKVREAGNDKI  155 (264)
T ss_pred             CcEEEECchhc----------------ch-HHHHHHHhccCCeEE--ec------CCCcCCHHHHHHHHHHHHHcCCCeE
Confidence            89999853211                11 144555556677764  11      1112578999999999999999999


Q ss_pred             EEccC---cCcCCH-HHHHHHHHHHHhhCCCCeEEE---Ee-----------CCccchHHHHHHHHHHhCCCEEe
Q 015894          266 SLGDT---IGVGTP-GTVIPMLEAVLDAVPVDKLAV---HF-----------HDTYGQALSNILASLQMGISTVD  322 (398)
Q Consensus       266 ~L~DT---~G~~~P-~~v~~lv~~l~~~~p~~~l~~---H~-----------Hnd~GlA~ANalaAl~aGa~~VD  322 (398)
                      .||.=   +|+-.- .+++. +..+++ .. .|+-+   |.           =-++-+...-+.||+.+||+.+=
T Consensus       156 ilcERG~tf~y~r~~~D~~~-vp~~k~-~~-lPVi~DpSHsvq~pg~~~~~s~G~r~~v~~la~AAvA~GadGl~  227 (264)
T PRK05198        156 ILCERGTSFGYNNLVVDMRG-LPIMRE-TG-APVIFDATHSVQLPGGQGGSSGGQREFVPVLARAAVAVGVAGLF  227 (264)
T ss_pred             EEEeCCCCcCCCCeeechhh-hHHHhh-CC-CCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHcCCCEEE
Confidence            88873   322211 11211 223332 22 34555   44           33556788999999999999553

>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA)

Probab=85.91  E-value=33  Score=32.81  Aligned_cols=154  Identities=14%  Similarity=0.132  Sum_probs=81.2

Q ss_pred             hHHHHHHcCCCEEEEeccCchHHHhhhc-CCCHHHHH------HHHHHHHHHHHhC-CCcEEEEEeeeecCCCCCCCCHH
Q 015894          177 GFEAAVAAGAKEVAIFASASESFSKSNI-NCTIEDSL------IRYRDVALAAREL-SIPVRGYLSCVVGCPVEGMVPPS  248 (398)
Q Consensus       177 ~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~-~~s~~~~l------~~~~~~v~~ak~~-G~~v~~~l~~~fg~~~~~r~~~~  248 (398)
                      .++...+.|+|.+++=++.||....-.+ ......+|      +..-+.++..|+. .+++  .+|.-+ +|.-     .
T Consensus        19 ~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a~~~al~~g~~~~~~~~~~~~vr~~~~~pv--~lm~y~-n~~~-----~   90 (242)
T cd04724          19 ILKALVEAGADIIELGIPFSDPVADGPVIQAASERALANGVTLKDVLELVKEIRKKNTIPI--VLMGYY-NPIL-----Q   90 (242)
T ss_pred             HHHHHHHCCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHhhcCCCCE--EEEEec-CHHH-----H
Confidence            3556677899999998777765322100 00011122      2445666776654 4443  243211 1110     1


Q ss_pred             H-HHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe-eccc
Q 015894          249 K-VAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD-SSVS  326 (398)
Q Consensus       249 ~-l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD-~Sv~  326 (398)
                      + +.++++.+.++|++.+.++|-    .|++..++++.++++-..  ..+=+=.+.-......+  +....+.|- .|+.
T Consensus        91 ~G~~~fi~~~~~aG~~giiipDl----~~ee~~~~~~~~~~~g~~--~i~~i~P~T~~~~i~~i--~~~~~~~vy~~s~~  162 (242)
T cd04724          91 YGLERFLRDAKEAGVDGLIIPDL----PPEEAEEFREAAKEYGLD--LIFLVAPTTPDERIKKI--AELASGFIYYVSRT  162 (242)
T ss_pred             hCHHHHHHHHHHCCCcEEEECCC----CHHHHHHHHHHHHHcCCc--EEEEeCCCCCHHHHHHH--HhhCCCCEEEEeCC
Confidence            1 245677788999999999995    578888899998875422  22222222222222222  222444332 2333


Q ss_pred             -cCCCCCCCCCCCC-CccHHHHHHHHHh
Q 015894          327 -GLGGCPYAKGASG-NVATEDVVYMLNG  352 (398)
Q Consensus       327 -GlGecp~a~graG-Na~lE~vv~~L~~  352 (398)
                       |-|+      .++ ...+.+.+..+++
T Consensus       163 g~tG~------~~~~~~~~~~~i~~lr~  184 (242)
T cd04724         163 GVTGA------RTELPDDLKELIKRIRK  184 (242)
T ss_pred             CCCCC------ccCCChhHHHHHHHHHh
Confidence             3344      443 4556777777775

TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.

>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase

Probab=85.89  E-value=37  Score=33.32  Aligned_cols=111  Identities=12%  Similarity=0.140  Sum_probs=66.3

Q ss_pred             CCcEEEEe-CCHhhHHHHHHcCCCEEEEeccCchHHH--hhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCC
Q 015894          165 GARFPVLT-PNLKGFEAAVAAGAKEVAIFASASESFS--KSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPV  241 (398)
Q Consensus       165 ~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~--~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~  241 (398)
                      +-++.+++ .+..-.+.+.++|+|.|-+-.++.-.-.  ......|.++.+...+.+.+-++.   .+.  +   ...|+
T Consensus        14 g~~i~m~tayD~~sA~i~~~aG~d~ilvGdSlgm~~lG~~~t~~vtldem~~h~~aV~rg~~~---~~v--v---~DmPf   85 (263)
T TIGR00222        14 EEKIVAITAYDYSFAKLFADAGVDVILVGDSLGMVVLGHDSTLPVTVADMIYHTAAVKRGAPN---CLI--V---TDLPF   85 (263)
T ss_pred             CCcEEEEeccCHHHHHHHHHcCCCEEEECccHhHHhcCCCCCCCcCHHHHHHHHHHHHhhCCC---ceE--E---eCCCc
Confidence            45666665 3445556667899998887544332211  112246778888777665554432   111  1   12355


Q ss_pred             CCCCCHHHHHHHHHHHHh-CCCCEEEEccCcCcCCHHHHHHHHHHHHhh
Q 015894          242 EGMVPPSKVAYVSKQLYD-MGCSEISLGDTIGVGTPGTVIPMLEAVLDA  289 (398)
Q Consensus       242 ~~r~~~~~l~~~a~~l~~-~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~  289 (398)
                      .+-.+++....-+.++.+ .|++.|.|-|.      .++.++++++.+.
T Consensus        86 ~sy~~~e~a~~na~rl~~eaGa~aVkiEgg------~~~~~~i~~l~~~  128 (263)
T TIGR00222        86 MSYATPEQALKNAARVMQETGANAVKLEGG------EWLVETVQMLTER  128 (263)
T ss_pred             CCCCCHHHHHHHHHHHHHHhCCeEEEEcCc------HhHHHHHHHHHHC
Confidence            443357777666666555 99999999995      4466777777653

Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.

>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites

Probab=85.88  E-value=16  Score=34.14  Aligned_cols=111  Identities=18%  Similarity=0.129  Sum_probs=69.0

Q ss_pred             hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 015894          176 KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSK  255 (398)
Q Consensus       176 ~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~  255 (398)
                      +.++.+.++|++.|.+....+                   .+.++.+++.++.+...+           .+.    +.++
T Consensus        71 ~~~~~~~~~g~d~v~l~~~~~-------------------~~~~~~~~~~~i~~i~~v-----------~~~----~~~~  116 (236)
T cd04730          71 ALLEVALEEGVPVVSFSFGPP-------------------AEVVERLKAAGIKVIPTV-----------TSV----EEAR  116 (236)
T ss_pred             HHHHHHHhCCCCEEEEcCCCC-------------------HHHHHHHHHcCCEEEEeC-----------CCH----HHHH
Confidence            357888899999998853311                   133556666777654211           122    2345


Q ss_pred             HHHhCCCCEEEEcc--CcCcCCHH--HHHHHHHHHHhhCCCCeEEEEeCCccchHH-HHHHHHHHhCCCEEeecc
Q 015894          256 QLYDMGCSEISLGD--TIGVGTPG--TVIPMLEAVLDAVPVDKLAVHFHDTYGQAL-SNILASLQMGISTVDSSV  325 (398)
Q Consensus       256 ~l~~~Gad~I~L~D--T~G~~~P~--~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~-ANalaAl~aGa~~VD~Sv  325 (398)
                      .+.+.|++.|.+-.  +.|...+.  ...++++.+++.++ .|+-..+    |... .|+..++.+|++.|.+.-
T Consensus       117 ~~~~~gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~~-~Pvi~~G----GI~~~~~v~~~l~~GadgV~vgS  186 (236)
T cd04730         117 KAEAAGADALVAQGAEAGGHRGTFDIGTFALVPEVRDAVD-IPVIAAG----GIADGRGIAAALALGADGVQMGT  186 (236)
T ss_pred             HHHHcCCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHhC-CCEEEEC----CCCCHHHHHHHHHcCCcEEEEch
Confidence            56678999887633  22444332  34567777777553 3555544    5554 788888999999887753

NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.

>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional

Probab=85.86  E-value=21  Score=35.73  Aligned_cols=92  Identities=17%  Similarity=0.193  Sum_probs=42.6

Q ss_pred             HHHHHHHHHHhCC-CCEEEEccCcCcCCHHHHHHHHHHHHhh-CCCCeEEEEeCC-----------ccchHHHHHHHHHH
Q 015894          249 KVAYVSKQLYDMG-CSEISLGDTIGVGTPGTVIPMLEAVLDA-VPVDKLAVHFHD-----------TYGQALSNILASLQ  315 (398)
Q Consensus       249 ~l~~~a~~l~~~G-ad~I~L~DT~G~~~P~~v~~lv~~l~~~-~p~~~l~~H~Hn-----------d~GlA~ANalaAl~  315 (398)
                      .+.++++.+.+.+ ...+.+ .|.|.+.+.    .+..+++. +..+.|.++..+           ++...+.+.-++.+
T Consensus        77 dl~~li~~i~~~~~l~~i~i-tTNG~ll~~----~~~~L~~aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~  151 (329)
T PRK13361         77 GCDQLVARLGKLPGLEELSL-TTNGSRLAR----FAAELADAGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKA  151 (329)
T ss_pred             cHHHHHHHHHhCCCCceEEE-EeChhHHHH----HHHHHHHcCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHH
Confidence            3445555555554 334444 477766543    33344432 222345554432           22334455555556


Q ss_pred             hCCC--EEeeccccCCCCCCCCCCCCC-ccHHHHHHHHHhCCC
Q 015894          316 MGIS--TVDSSVSGLGGCPYAKGASGN-VATEDVVYMLNGLGV  355 (398)
Q Consensus       316 aGa~--~VD~Sv~GlGecp~a~graGN-a~lE~vv~~L~~~Gi  355 (398)
                      +|..  .|++.+. -|.         | -.+++++..++++|+
T Consensus       152 ~Gi~~v~in~v~~-~g~---------N~~ei~~~~~~~~~~gi  184 (329)
T PRK13361        152 AGFERIKLNAVIL-RGQ---------NDDEVLDLVEFCRERGL  184 (329)
T ss_pred             cCCCceEEEEEEE-CCC---------CHHHHHHHHHHHHhcCC
Confidence            6763  2333332 122         2 245555666666665

>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain

Probab=85.83  E-value=8  Score=36.07  Aligned_cols=79  Identities=24%  Similarity=0.288  Sum_probs=51.6

Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEc----------cCcCcC---CHHHHHHHHHHHHhhCCCCeEEEEeC--Cccc-hHHHH
Q 015894          246 PPSKVAYVSKQLYDMGCSEISLG----------DTIGVG---TPGTVIPMLEAVLDAVPVDKLAVHFH--DTYG-QALSN  309 (398)
Q Consensus       246 ~~~~l~~~a~~l~~~Gad~I~L~----------DT~G~~---~P~~v~~lv~~l~~~~p~~~l~~H~H--nd~G-lA~AN  309 (398)
                      +++.+.+.++.+.++|+|.|.|-          |-.|..   .|..+.++++++++..+ .++.+-.-  .+.. -...-
T Consensus        65 ~~~~~~~aa~~~~~aG~d~ieln~g~p~~~~~~~~~G~~l~~~~~~~~eii~~v~~~~~-~~v~vk~r~~~~~~~~~~~~  143 (231)
T cd02801          65 DPETLAEAAKIVEELGADGIDLNMGCPSPKVTKGGAGAALLKDPELVAEIVRAVREAVP-IPVTVKIRLGWDDEEETLEL  143 (231)
T ss_pred             CHHHHHHHHHHHHhcCCCEEEEeCCCCHHHHhCCCeeehhcCCHHHHHHHHHHHHHhcC-CCEEEEEeeccCCchHHHHH
Confidence            57888888998988999988774          444432   78889999999998876 34444332  2222 22222


Q ss_pred             HHHHHHhCCCEEeecc
Q 015894          310 ILASLQMGISTVDSSV  325 (398)
Q Consensus       310 alaAl~aGa~~VD~Sv  325 (398)
                      +-...++|++.|..+-
T Consensus       144 ~~~l~~~Gvd~i~v~~  159 (231)
T cd02801         144 AKALEDAGASALTVHG  159 (231)
T ss_pred             HHHHHHhCCCEEEECC
Confidence            3333457999886653

Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.

>TIGR00542 hxl6Piso_put hexulose-6-phosphate isomerase, putative

Probab=85.80  E-value=35  Score=32.88  Aligned_cols=75  Identities=13%  Similarity=0.014  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCC-CCCCCH-------HHHHHHHHHHHhCCCCE-EEEccCcCcCCHHH
Q 015894          208 IEDSLIRYRDVALAARELSIPVRGYLSCVVGCPV-EGMVPP-------SKVAYVSKQLYDMGCSE-ISLGDTIGVGTPGT  278 (398)
Q Consensus       208 ~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~-~~r~~~-------~~l~~~a~~l~~~Gad~-I~L~DT~G~~~P~~  278 (398)
                      +++.++.+++.++.|+++|..+.. +   ++... ....+.       +.+.++++.+.++|+.. +-.-++.=..++.+
T Consensus        89 r~~~~~~~~~~i~~a~~lG~~~v~-~---~~~~~~~~~~~~~~~~~~~~~l~~l~~~A~~~Gv~l~lE~~~~~~~~t~~~  164 (279)
T TIGR00542        89 RQQGLEIMEKAIQLARDLGIRTIQ-L---AGYDVYYEEHDEETRRRFREGLKEAVELAARAQVTLAVEIMDTPFMSSISK  164 (279)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCEEE-e---cCcccccCcCCHHHHHHHHHHHHHHHHHHHHcCCEEEEeeCCCchhcCHHH
Confidence            456788999999999999997542 1   22111 011112       34455667777778842 22222222345566


Q ss_pred             HHHHHHHH
Q 015894          279 VIPMLEAV  286 (398)
Q Consensus       279 v~~lv~~l  286 (398)
                      +.++++.+
T Consensus       165 ~~~li~~v  172 (279)
T TIGR00542       165 WLKWDHYL  172 (279)
T ss_pred             HHHHHHHc
Confidence            66665544

This family is conserved at better than 40 % identity among the four known examples from three species: Escherichia coli (SgbU and SgaU), Haemophilus influenzae, and Mycoplasma pneumoniae. The rarity of the family, high level of conservation, and proposed catabolic role suggests lateral transfer may be a part of the evolutionary history of this protein.

>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]

Probab=85.79  E-value=44  Score=34.02  Aligned_cols=233  Identities=20%  Similarity=0.255  Sum_probs=128.5

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEE-EeCCHhhHHHHHHcCCCEEEEeccC
Q 015894          117 PAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPV-LTPNLKGFEAAVAAGAKEVAIFASA  195 (398)
Q Consensus       117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~-l~~n~~~ie~a~~~Gv~~v~i~~~~  195 (398)
                      +.+..++-+..|.++|.+.+-++-+       .+++++.+ ..+++..++.+.+ +-.+.+=.-.+.++|++.+||=-. 
T Consensus        34 Dv~aTv~QI~~L~~aG~dIVRvtv~-------~~e~A~A~-~~Ik~~~~vPLVaDiHf~~rla~~~~~~g~~k~RINPG-  104 (361)
T COG0821          34 DVEATVAQIKALERAGCDIVRVTVP-------DMEAAEAL-KEIKQRLNVPLVADIHFDYRLALEAAECGVDKVRINPG-  104 (361)
T ss_pred             cHHHHHHHHHHHHHcCCCEEEEecC-------CHHHHHHH-HHHHHhCCCCEEEEeeccHHHHHHhhhcCcceEEECCc-
Confidence            3455577788999999999999853       23445433 3444323444443 222433333556789999998322 


Q ss_pred             chHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC------CCCCHHHHHH----HHHHHHhCCCCEE
Q 015894          196 SESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE------GMVPPSKVAY----VSKQLYDMGCSEI  265 (398)
Q Consensus       196 Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~------~r~~~~~l~~----~a~~l~~~Gad~I  265 (398)
                             |++.  +   ++++++|+.||+.|+.++..+.  +|+-+.      +..++|-+.+    -++.+.++|.+.|
T Consensus       105 -------Nig~--~---~~v~~vVe~Ak~~g~piRIGVN--~GSLek~~~~ky~~pt~ealveSAl~~a~~~e~l~f~~i  170 (361)
T COG0821         105 -------NIGF--K---DRVREVVEAAKDKGIPIRIGVN--AGSLEKRLLEKYGGPTPEALVESALEHAELLEELGFDDI  170 (361)
T ss_pred             -------ccCc--H---HHHHHHHHHHHHcCCCEEEecc--cCchhHHHHHHhcCCCHHHHHHHHHHHHHHHHHCCCCcE
Confidence                   3332  2   3788999999999999996665  444221      0123444333    4566777887644


Q ss_pred             EEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCC-ccchHHH------HHHHH-HHhCC-CEEeeccccCCCCCCCCC
Q 015894          266 SLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHD-TYGQALS------NILAS-LQMGI-STVDSSVSGLGGCPYAKG  336 (398)
Q Consensus       266 ~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hn-d~GlA~A------NalaA-l~aGa-~~VD~Sv~GlGecp~a~g  336 (398)
                      .+.  +=...|..+-+-.+.+.+... -||  |.== --|++..      -++.+ +..|+ |.|-+|+.+         
T Consensus       171 ~iS--~K~Sdv~~~v~aYr~lA~~~d-yPL--HLGvTEAG~~~~G~VkSa~alg~LL~eGIGDTIRVSLt~---------  236 (361)
T COG0821         171 KVS--VKASDVQLMVAAYRLLAKRCD-YPL--HLGVTEAGMGFKGIVKSAAALGALLSEGIGDTIRVSLTA---------  236 (361)
T ss_pred             EEE--EEcCCHHHHHHHHHHHHHhcC-CCc--ccceecccCcccceehHHHHHHHHHHhcCCceEEEecCC---------
Confidence            331  222244444444444444331 122  2211 1343322      22222 34565 677777652         


Q ss_pred             CCCCccHHHHHHH---HHhCCCC-CccC-----------hHHHHHHHHHHHHHhCCCCCCCcccccccc
Q 015894          337 ASGNVATEDVVYM---LNGLGVR-TNVD-----------IRKLMIAGDFICKHLGRTSGSKTAIALSKT  390 (398)
Q Consensus       337 raGNa~lE~vv~~---L~~~Gi~-t~iD-----------l~~L~~~~~~v~~~~g~~~~~~~pivG~~~  390 (398)
                         . |+||+...   |+.+|+. .+++           .+-+..+.+..++..+.+.|=+.++.|.=+
T Consensus       237 ---~-P~~EV~V~~eILqslglR~~~v~~iaCP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVV  301 (361)
T COG0821         237 ---D-PVEEVKVAQEILQSLGLRSRGVEVIACPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVV  301 (361)
T ss_pred             ---C-chhhhHHHHHHHHHhCccccCceEEECCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEe
Confidence               1 25666543   4445654 1222           234445566667788888888888888643

>PRK14328 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=85.76  E-value=48  Score=34.57  Aligned_cols=143  Identities=17%  Similarity=0.183  Sum_probs=81.6

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCc---ccCCCCHHHHHHHHHhccCC---cEEEEeC---CHhhHHHHHHcC
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKW---VPQLADAKDVMAAIQNVEGA---RFPVLTP---NLKGFEAAVAAG  185 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~---~p~~~D~~~v~~~i~~~~~~---~l~~l~~---n~~~ie~a~~~G  185 (398)
                      ..+.++.++-++.|.+.|+..|-+....-..+   .+...+..++++.+...++.   ++...-+   +.+-++...++|
T Consensus       175 sr~~e~Iv~Ei~~l~~~G~~ei~l~~~~~~~yg~d~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~P~~i~~ell~~l~~~~  254 (439)
T PRK14328        175 SRKPEDIIAEIKELVSEGYKEVTLLGQNVNSYGKDLEEKIDFADLLRRVNEIDGLERIRFMTSHPKDLSDDLIEAIADCD  254 (439)
T ss_pred             cCCHHHHHHHHHHHHHCCCcEEEEeccccCcCCcCCCCCcCHHHHHHHHHhcCCCcEEEEecCChhhcCHHHHHHHHhCC
Confidence            46788888888889889999887753211111   11112345566666555443   2222223   223455556665


Q ss_pred             --CCEEEEe-ccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC
Q 015894          186 --AKEVAIF-ASASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM  260 (398)
Q Consensus       186 --v~~v~i~-~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~  260 (398)
                        ...+++- =+.|+.-++. +|+.  -..+.+.++++.+++.  ++.+.++++  +|.|.+   +.+.+.+.++.+.++
T Consensus       255 ~~~~~l~iglQSgsd~vLk~-M~R~--~~~~~~~~~i~~lr~~~~~i~i~~d~I--vG~PgE---T~ed~~~tl~~i~~l  326 (439)
T PRK14328        255 KVCEHIHLPVQSGSNRILKK-MNRH--YTREYYLELVEKIKSNIPDVAITTDII--VGFPGE---TEEDFEETLDLVKEV  326 (439)
T ss_pred             CcCceeeeCCCcCCHHHHHh-CCCC--CCHHHHHHHHHHHHHhCCCCEEEEEEE--EECCCC---CHHHHHHHHHHHHhc
Confidence              6777774 4556655443 5542  1123444566777776  555655555  777876   467777777777777


Q ss_pred             CCCEE
Q 015894          261 GCSEI  265 (398)
Q Consensus       261 Gad~I  265 (398)
                      +.+.+
T Consensus       327 ~~~~~  331 (439)
T PRK14328        327 RYDSA  331 (439)
T ss_pred             CCCcc
Confidence            76543

>cd06811 PLPDE_III_yhfX_like Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme yhfX

Probab=85.76  E-value=45  Score=34.18  Aligned_cols=178  Identities=16%  Similarity=0.126  Sum_probs=92.1

Q ss_pred             HHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh-ccCCcEEEEe-CCHhhHHHHHHcCCCEEEEeccCchHH
Q 015894          122 VELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN-VEGARFPVLT-PNLKGFEAAVAAGAKEVAIFASASESF  199 (398)
Q Consensus       122 ~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~~~Sd~~  199 (398)
                      .++++.|.+.|++.+.+..            .+|...+.+. .+...+..+. ....+++.+++.++..+.+.       
T Consensus        67 ~~ia~~l~~~G~~g~~vas------------~~Ea~~lr~aGi~~~~I~~l~~~~~~el~~~v~~~~~~i~V~-------  127 (382)
T cd06811          67 PFLARALLEAGIPGAVAVD------------FKEARALHEAGLPLGHVGHLVQIPRHQVPAVLAMRPEVITVY-------  127 (382)
T ss_pred             HHHHHHHHHcCCCeEeEec------------HHHHHHHHHcCCCHHhEEEccCCCHHHHHHHHHcCCCEEEEC-------
Confidence            4799999999998777753            2344333331 2211333222 24567888888876545442       


Q ss_pred             HhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC-----CCCCHHHHHHHHHHHHhC-CCCEEEEccCcCc
Q 015894          200 SKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE-----GMVPPSKVAYVSKQLYDM-GCSEISLGDTIGV  273 (398)
Q Consensus       200 ~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~-----~r~~~~~l~~~a~~l~~~-Gad~I~L~DT~G~  273 (398)
                                 .++.+..+.+.|++.|..+.+.|..-.|...-     +=.+++.+.++++.+.++ +.+...| =+.+.
T Consensus       128 -----------s~~~l~~L~~~A~~~g~~~~V~LrVdtg~~ri~~g~~~G~~~~e~~~~~~~i~~l~~l~l~Gi-thf~~  195 (382)
T cd06811         128 -----------SLEKAREISDAAVELGRVQDVLLRVYGDEDTLYPGQEGGFPLEELPAVLAAIKALPGIRIAGL-TSFPC  195 (382)
T ss_pred             -----------CHHHHHHHHHHHHHcCCceEEEEEEECCCCccccCccceecHHHHHHHHHHHHcCCCcEEEeE-cccch
Confidence                       13444455566777887766555532221110     014567777777777664 4554444 22222


Q ss_pred             C---------CHHHHHHHHHHHHhhCCC--Ce-EEEEeCCccchHHHHHH-HHHHhCCCEEeeccccCCCCCC
Q 015894          274 G---------TPGTVIPMLEAVLDAVPV--DK-LAVHFHDTYGQALSNIL-ASLQMGISTVDSSVSGLGGCPY  333 (398)
Q Consensus       274 ~---------~P~~v~~lv~~l~~~~p~--~~-l~~H~Hnd~GlA~ANal-aAl~aGa~~VD~Sv~GlGecp~  333 (398)
                      .         .|....+.+..+++.+..  .+ -.+|+.   |...+.++ ...+.|.+.+...+.=+|--|+
T Consensus       196 ~~~d~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~~is~G---ga~ss~~l~~~~~~~~t~vRpG~~LyG~~p~  265 (382)
T cd06811         196 FLYDEEQGDIAPTPNLFTLLKAKELLEKRGIEILQLNAP---SATSCATLPLLAEYGVTHGEPGHALTGTTPL  265 (382)
T ss_pred             hhcccCcccccHHHHHHHHHHHHHHHHHCCCCCeEEccC---CCcchhhHHHHHhCCCcEEeccEEEecCcch
Confidence            1         133222223333333321  11 223332   22223333 4557888888877777776554

This subfamily is composed of the uncharacterized protein yhfX from Escherichia coli K-12 and similar bacterial proteins. These proteins are homologous to bacterial alanine racemases (AR), which are fold type III PLP-dependent enzymes containing an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. AR exists as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. It catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. Members of this subfamily may act as PLP-dependent enzymes.

>TIGR01362 KDO8P_synth 3-deoxy-8-phosphooctulonate synthase

Probab=85.66  E-value=38  Score=33.17  Aligned_cols=69  Identities=19%  Similarity=0.085  Sum_probs=44.5

Q ss_pred             HHHhCCCcEEEEEeeeecCCCCC----CCCHHHHHHHHHHHHhCCCCEE----------EEccCcCcCCHHHHHHHHHHH
Q 015894          221 AARELSIPVRGYLSCVVGCPVEG----MVPPSKVAYVSKQLYDMGCSEI----------SLGDTIGVGTPGTVIPMLEAV  286 (398)
Q Consensus       221 ~ak~~G~~v~~~l~~~fg~~~~~----r~~~~~l~~~a~~l~~~Gad~I----------~L~DT~G~~~P~~v~~lv~~l  286 (398)
                      ..|+.+++|.+.-+.++..|-..    --..+++..+++.+.++|+|.+          .++|-.=.++|.++.++++.+
T Consensus       170 ~~k~~~~PVi~DpSHsvq~pg~~g~~s~G~r~~v~~la~AAvA~GaDGl~iEvHpdP~~AlsDg~q~l~~~~~~~ll~~l  249 (258)
T TIGR01362       170 IMRELGCPVIFDATHSVQQPGGLGGASGGLREFVPTLARAAVAVGIDGLFMETHPDPKNAKSDGPNMLPLSELEGLLEKL  249 (258)
T ss_pred             HHHhcCCCEEEeCCccccCCCCCCCCCCCcHHHHHHHHHHHHHhCCCEEEEEeCCCccccCCCccccCCHHHHHHHHHHH
Confidence            33555666655444442222210    2345778888888888888865          467888888888888888887


Q ss_pred             Hhh
Q 015894          287 LDA  289 (398)
Q Consensus       287 ~~~  289 (398)
                      ++.
T Consensus       250 ~~i  252 (258)
T TIGR01362       250 LAI  252 (258)
T ss_pred             HHH
Confidence            753

In Gram-negative bacteria, this is the first step in the biosynthesis of 3-deoxy-D-manno-octulosonate, part of the oligosaccharide core of lipopolysaccharide.

>TIGR02319 CPEP_Pphonmut carboxyvinyl-carboxyphosphonate phosphorylmutase

Probab=85.65  E-value=13  Score=37.01  Aligned_cols=134  Identities=15%  Similarity=0.159  Sum_probs=82.0

Q ss_pred             HHHHHHcCCCEEEEe-ccCchH-HHhhh-cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHH
Q 015894          178 FEAAVAAGAKEVAIF-ASASES-FSKSN-INCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVS  254 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~-~~~Sd~-~~~~~-~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a  254 (398)
                      .+.+.++|.+-+.+. ..++-. +-..- -..+.++.++.++++++.   ..++|.+.+-.-||       ++..+.+.+
T Consensus        29 Arl~e~aGf~ai~~sg~~~~as~lG~pD~g~l~~~e~~~~~~~I~~~---~~lPv~aD~dtGyG-------~~~~v~r~V   98 (294)
T TIGR02319        29 AKVIQQAGFPAVHMTGSGTSASMLGLPDLGFTSVSEQAINAKNIVLA---VDVPVIMDADAGYG-------NAMSVWRAT   98 (294)
T ss_pred             HHHHHHcCCCEEEecHHHHHHHHcCCCCcCCCCHHHHHHHHHHHHhc---cCCCEEEECCCCCC-------CcHHHHHHH
Confidence            455667888877662 121111 00000 124677777777655554   46777654443222       333477889


Q ss_pred             HHHHhCCCCEEEEccCcC-----------cCCHHHHHHHHHHHHhhC--CCCeE----EEEeCCccchHHHHHHHHHHhC
Q 015894          255 KQLYDMGCSEISLGDTIG-----------VGTPGTVIPMLEAVLDAV--PVDKL----AVHFHDTYGQALSNILASLQMG  317 (398)
Q Consensus       255 ~~l~~~Gad~I~L~DT~G-----------~~~P~~v~~lv~~l~~~~--p~~~l----~~H~Hnd~GlA~ANalaAl~aG  317 (398)
                      +++.++|+..|.|-|..+           +..+++....|++.++.-  ++.-|    ..-....+--|+.-+.+-.++|
T Consensus        99 ~~~~~aGaagi~IEDq~~pK~cg~~~~k~lv~~ee~~~kI~Aa~~A~~~~d~~I~ARTDa~~~~g~deaI~Ra~aY~eAG  178 (294)
T TIGR02319        99 REFERVGIVGYHLEDQVNPKRCGHLEGKRLISTEEMTGKIEAAVEAREDEDFTIIARTDARESFGLDEAIRRSREYVAAG  178 (294)
T ss_pred             HHHHHcCCeEEEEECCCCccccCCCCCccccCHHHHHHHHHHHHHhccCCCeEEEEEecccccCCHHHHHHHHHHHHHhC
Confidence            999999999999999874           345677777777777643  22212    1112234556888889999999


Q ss_pred             CCEE
Q 015894          318 ISTV  321 (398)
Q Consensus       318 a~~V  321 (398)
                      ||.|
T Consensus       179 AD~i  182 (294)
T TIGR02319       179 ADCI  182 (294)
T ss_pred             CCEE
Confidence            9965

This family consists of carboxyvinyl-carboxyphosphonate phosphorylmutase (CPEP phosphonomutase), an unusual enzyme involved in the biosynthesis of the antibiotic bialaphos. So far, it is known only in that pathway and only in Streptomyces hygroscopicus. Some related proteins annotated as being functionally equivalent are likely misannotated examples of methylisocitrate lyase, an enzyme of priopionate utilization.

>PRK08898 coproporphyrinogen III oxidase; Provisional

Probab=85.64  E-value=20  Score=36.80  Aligned_cols=93  Identities=14%  Similarity=0.086  Sum_probs=60.2

Q ss_pred             CCcEEEEe-C---CHhhHHHHHHcCCCEEEEecc-CchHHHhhhcCC--CHHHHHHHHHHHHHHHHhCCCcEEEEEeeee
Q 015894          165 GARFPVLT-P---NLKGFEAAVAAGAKEVAIFAS-ASESFSKSNINC--TIEDSLIRYRDVALAARELSIPVRGYLSCVV  237 (398)
Q Consensus       165 ~~~l~~l~-~---n~~~ie~a~~~Gv~~v~i~~~-~Sd~~~~~~~~~--s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~f  237 (398)
                      +.++++-+ +   +.+.++...++|+.+|.+-+- .+|... ..+|+  +.++    +.++++.+++.+..|.+.++  +
T Consensus       108 ~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~~~~~L-~~l~R~~~~~~----~~~~i~~~~~~~~~v~~dlI--~  180 (394)
T PRK08898        108 DAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSFNDAHL-KALGRIHDGAE----ARAAIEIAAKHFDNFNLDLM--Y  180 (394)
T ss_pred             CCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccCCHHHH-HHhCCCCCHHH----HHHHHHHHHHhCCceEEEEE--c
Confidence            34566555 2   346788889999999988554 334333 33443  4443    44556667776666766665  6


Q ss_pred             cCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 015894          238 GCPVEGMVPPSKVAYVSKQLYDMGCSEISL  267 (398)
Q Consensus       238 g~~~~~r~~~~~l~~~a~~l~~~Gad~I~L  267 (398)
                      |.|..   +.+.+.+-++.+.+++++.|.+
T Consensus       181 GlPgq---t~~~~~~~l~~~~~l~p~~is~  207 (394)
T PRK08898        181 ALPGQ---TLDEALADVETALAFGPPHLSL  207 (394)
T ss_pred             CCCCC---CHHHHHHHHHHHHhcCCCEEEE
Confidence            76653   5677777788889999987653

>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein

Probab=85.58  E-value=38  Score=33.18  Aligned_cols=49  Identities=22%  Similarity=0.290  Sum_probs=33.2

Q ss_pred             HHHHHHHHHHHhC-CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCc
Q 015894          213 IRYRDVALAAREL-SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTI  271 (398)
Q Consensus       213 ~~~~~~v~~ak~~-G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~  271 (398)
                      +.+.++++.+|+. ++.|.+-+.          .+.+...++++.+.++|+|.|.+..|.
T Consensus       143 ~~~~eiv~~vr~~~~~pv~vKi~----------~~~~~~~~~a~~l~~~G~d~i~v~nt~  192 (300)
T TIGR01037       143 ELSADVVKAVKDKTDVPVFAKLS----------PNVTDITEIAKAAEEAGADGLTLINTL  192 (300)
T ss_pred             HHHHHHHHHHHHhcCCCEEEECC----------CChhhHHHHHHHHHHcCCCEEEEEccC
Confidence            4455666666654 666653332          234567888999999999999886554

This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.

>COG0854 PdxJ Pyridoxal phosphate biosynthesis protein [Coenzyme metabolism]

Probab=85.46  E-value=2.4  Score=40.43  Aligned_cols=119  Identities=19%  Similarity=0.238  Sum_probs=69.9

Q ss_pred             HHHHHhc--cCCcEEEEe-CCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCC--CHHH---HHHHHHHHHHHHHhCCCc
Q 015894          157 MAAIQNV--EGARFPVLT-PNLKGFEAAVAAGAKEVAIFASASESFSKSNINC--TIED---SLIRYRDVALAARELSIP  228 (398)
Q Consensus       157 ~~~i~~~--~~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~--s~~~---~l~~~~~~v~~ak~~G~~  228 (398)
                      ...++++  .+++++-+. ++..+++.|.+.|++.|-++...     ..+..-  ..++   .+.++....++|.++|+.
T Consensus       114 ~~~v~~L~~~GirVSLFiD~d~~qi~aa~~~gA~~IELhTG~-----Ya~~~~~~~~~~~~~el~rl~~~a~~A~~lGL~  188 (243)
T COG0854         114 RDAVRRLKNAGIRVSLFIDPDPEQIEAAAEVGAPRIELHTGP-----YADAHDAAEQARADAELERLAKAAKLAAELGLK  188 (243)
T ss_pred             HHHHHHHHhCCCeEEEEeCCCHHHHHHHHHhCCCEEEEeccc-----ccccCChHHHHHHHHHHHHHHHHHHHHHHcCce
Confidence            3444443  357777776 57889999999999999987652     111111  2222   678899999999999999


Q ss_pred             EEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHh
Q 015894          229 VRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLD  288 (398)
Q Consensus       229 v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~  288 (398)
                      |.+      | -+-+-.+..-++++.. +.+..+-.--++|.+=++.+..|.++...++.
T Consensus       189 VnA------G-HgLty~Nv~~~a~~~~-i~ElnIGH~iia~Av~~Gl~~aV~~m~~~~~~  240 (243)
T COG0854         189 VNA------G-HGLTYHNVKPLAAIPP-LAELNIGHSIIARAVFVGLEEAVREMKRLMKR  240 (243)
T ss_pred             Eec------C-CCccccchHHHhcCCc-ceeecccHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            862      1 1111122222222222 22222211223556666778888887776654

>PRK09057 coproporphyrinogen III oxidase; Provisional

Probab=85.40  E-value=40  Score=34.47  Aligned_cols=94  Identities=17%  Similarity=0.111  Sum_probs=59.5

Q ss_pred             CcEEEEe-C---CHhhHHHHHHcCCCEEEEeccCchHHHhhhcCC--CHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecC
Q 015894          166 ARFPVLT-P---NLKGFEAAVAAGAKEVAIFASASESFSKSNINC--TIEDSLIRYRDVALAARELSIPVRGYLSCVVGC  239 (398)
Q Consensus       166 ~~l~~l~-~---n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~--s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~  239 (398)
                      +.+++=+ |   +.+.++...++|+.+|.+-+-.=+-..-..+|+  +.+++    .++++.+++.+..|.+.++  +|-
T Consensus        91 ~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~~d~vL~~l~R~~~~~~~----~~ai~~~~~~~~~v~~dli--~Gl  164 (380)
T PRK09057         91 IEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQALNDADLRFLGRLHSVAEA----LAAIDLAREIFPRVSFDLI--YAR  164 (380)
T ss_pred             ccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccCCHHHHHHcCCCCCHHHH----HHHHHHHHHhCccEEEEee--cCC
Confidence            3555444 3   346688888999998888554322222223443  44444    4566777877777776666  676


Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 015894          240 PVEGMVPPSKVAYVSKQLYDMGCSEISLG  268 (398)
Q Consensus       240 ~~~~r~~~~~l~~~a~~l~~~Gad~I~L~  268 (398)
                      |..   +.+.+.+-.+.+.+.+++.|.+-
T Consensus       165 Pgq---t~~~~~~~l~~~~~l~p~~is~y  190 (380)
T PRK09057        165 PGQ---TLAAWRAELKEALSLAADHLSLY  190 (380)
T ss_pred             CCC---CHHHHHHHHHHHHhcCCCeEEee
Confidence            754   56666666777888999877655

>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ

Probab=85.34  E-value=33  Score=32.24  Aligned_cols=157  Identities=13%  Similarity=0.075  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEE--EeCCHhhHHHHHHcCCCEEEEeccCch
Q 015894          120 VKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPV--LTPNLKGFEAAVAAGAKEVAIFASASE  197 (398)
Q Consensus       120 ~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~n~~~ie~a~~~Gv~~v~i~~~~Sd  197 (398)
                      +-+++++.+.+.|++.|=+.-....... .-.+. +++..+.+..+.++.+  =.++.++++.+.+.|++.|-+-..   
T Consensus        31 dp~~~a~~~~~~g~~~i~i~dl~~~~~~-~~~n~-~~~~~i~~~~~~pv~~~ggi~~~~d~~~~~~~G~~~vilg~~---  105 (232)
T TIGR03572        31 DPVNAARIYNAKGADELIVLDIDASKRG-REPLF-ELISNLAEECFMPLTVGGGIRSLEDAKKLLSLGADKVSINTA---  105 (232)
T ss_pred             CHHHHHHHHHHcCCCEEEEEeCCCcccC-CCCCH-HHHHHHHHhCCCCEEEECCCCCHHHHHHHHHcCCCEEEEChh---
Confidence            6788999999999996666432211100 00122 3444444333333332  236788999999999998765311   


Q ss_pred             HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeee----------ecCCCCCCCCHHHHHHHHHHHHhCCCCEEE
Q 015894          198 SFSKSNINCTIEDSLIRYRDVALAARELSIP-VRGYLSCV----------VGCPVEGMVPPSKVAYVSKQLYDMGCSEIS  266 (398)
Q Consensus       198 ~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~-v~~~l~~~----------fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~  266 (398)
                      .+          +..+.+.++++   ..|.. +.+.+-.-          +...+. ..+.....++++.+.+.|++.|.
T Consensus       106 ~l----------~~~~~~~~~~~---~~~~~~i~vsld~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~G~d~i~  171 (232)
T TIGR03572       106 AL----------ENPDLIEEAAR---RFGSQCVVVSIDVKKELDGSDYKVYSDNGR-RATGRDPVEWAREAEQLGAGEIL  171 (232)
T ss_pred             Hh----------cCHHHHHHHHH---HcCCceEEEEEEeccCCCCCcEEEEECCCc-ccCCCCHHHHHHHHHHcCCCEEE
Confidence            11          11122333332   33322 22112110          000000 11223456788899999999999


Q ss_pred             EccC--cCcCCHHHHHHHHHHHHhhCCCCeEEE
Q 015894          267 LGDT--IGVGTPGTVIPMLEAVLDAVPVDKLAV  297 (398)
Q Consensus       267 L~DT--~G~~~P~~v~~lv~~l~~~~p~~~l~~  297 (398)
                      +-|-  .|.... .-.++++.+++..+ +|+-.
T Consensus       172 i~~i~~~g~~~g-~~~~~~~~i~~~~~-ipvia  202 (232)
T TIGR03572       172 LNSIDRDGTMKG-YDLELIKTVSDAVS-IPVIA  202 (232)
T ss_pred             EeCCCccCCcCC-CCHHHHHHHHhhCC-CCEEE
Confidence            9883  333222 23566777776654 34444

This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr

>TIGR00449 tgt_general tRNA-guanine transglycosylases, various specificities

Probab=85.30  E-value=25  Score=36.03  Aligned_cols=134  Identities=14%  Similarity=0.145  Sum_probs=79.6

Q ss_pred             HHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHh---C-CC-cEEEEEeeeecCCCCCCCCHHHHHHH
Q 015894          179 EAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARE---L-SI-PVRGYLSCVVGCPVEGMVPPSKVAYV  253 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~---~-G~-~v~~~l~~~fg~~~~~r~~~~~l~~~  253 (398)
                      +.-...|.|.+..++-..+.      ..+.+++-+.+....+++++   . .. .-..    .|| +..+-..++.-..-
T Consensus       127 ~~q~~ig~DI~m~LD~~~~~------~~~~~~~~~av~rT~rw~~r~~~~~~~~~~~~----lfg-iVqGg~~~dLR~~s  195 (367)
T TIGR00449       127 EIQYALGSDIIMALDECTPP------PADYDYAEESLERTLRWAEESLEYHKRRNENA----LFG-IVQGGTYPDLRRQS  195 (367)
T ss_pred             HHHHHHCCCEEEECCcCCCC------CCCHHHHHHHHHHHHHHHHHHHHHHhccCCce----EEE-EecCCCCHHHHHHH
Confidence            33345688877766543322      22444444444444444432   1 10 0011    121 22333444444455


Q ss_pred             HHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCC-CCeEEEEeCCccchH-HHHHHHHHHhCCCEEeeccccC
Q 015894          254 SKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQA-LSNILASLQMGISTVDSSVSGL  328 (398)
Q Consensus       254 a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA-~ANalaAl~aGa~~VD~Sv~Gl  328 (398)
                      ++.+.+.+.+.+.|.--...-.+.++.+++..++..+| +.|..+     +|.+ ..+.+.++..|+|.+|++.--.
T Consensus       196 a~~l~~~~~~GyaIGGl~~ge~~~~~~~~l~~~~~~lP~~kPryl-----~Gvg~P~~i~~~v~~GvD~FD~~~ptr  267 (367)
T TIGR00449       196 AEGLAELDFDGYAIGGVSVGEPKRDMLRILEHVAPLLPKDKPRYL-----MGVGTPELLANAVSLGIDMFDCVAPTR  267 (367)
T ss_pred             HHHHhhCCCCeEEEeCcccCCCHHHHHHHHHHHHhhCCcccceEe-----cCCCCHHHHHHHHHcCCCEEeeCCccc
Confidence            88888899999888775322345889999999998887 444433     4555 4789999999999999887543

Different tRNA-guanine transglycosylases catalyze different tRNA base modifications. Two guanine base substitutions by different enzymes described by the model are involved in generating queuosine at position 34 in bacterial tRNAs and archaeosine at position 15 in archaeal tRNAs. This model is designed for fragment searching, so the superfamily is used loosely.

>TIGR03820 lys_2_3_AblA lysine-2,3-aminomutase

Probab=85.19  E-value=53  Score=34.43  Aligned_cols=182  Identities=12%  Similarity=0.080  Sum_probs=108.9

Q ss_pred             hccCCCCccEEEe----------CCCcccCCCCCCCCCHHHHHHHHHHHHh-cCCCEEEEecCCCCCcccCC-CC--HHH
Q 015894           90 LLGRVPGFVKIVE----------VGPRDGLQNEKNIVPAVVKVELIKLLVS-SGLAVVEATSFVSPKWVPQL-AD--AKD  155 (398)
Q Consensus        90 ~~~~~p~~I~i~D----------~TLRDG~Q~~~~~~~~~~k~~ia~~L~~-aGv~~IEvG~~~~~~~~p~~-~D--~~~  155 (398)
                      |.+.+|+.+.+.=          |+-|.........++.++..+++..+.+ .|+..|-++-.-     |-+ .|  .+.
T Consensus       102 l~HrYp~rvLl~vT~~C~~~CryC~R~~~~g~~~~~ls~eei~~~i~yI~~~p~I~~VlLSGGD-----PLll~d~~L~~  176 (417)
T TIGR03820       102 ITHRYPDRVLFLVSNTCAMYCRHCTRKRKVGDRDSIPSKEQILEGIEYIRNTPQIRDVLLSGGD-----PLLLSDDYLDW  176 (417)
T ss_pred             ceeccCCEEEEEEcCCcCCCCcCCCCcccCCcccccCCHHHHHHHHHHHHhcCCCCEEEEeCCc-----cccCChHHHHH
Confidence            4577887766641          2223211111235678888888888877 488777665321     111 23  234


Q ss_pred             HHHHHHhccCCcEEEE-eC------C---HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC
Q 015894          156 VMAAIQNVEGARFPVL-TP------N---LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAREL  225 (398)
Q Consensus       156 v~~~i~~~~~~~l~~l-~~------n---~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~  225 (398)
                      ++..++.+|.++...+ ++      .   .+-++...+.+.  +.+.++.+-          ..|..+...++++..++.
T Consensus       177 iL~~L~~IphV~~IRI~TR~pvv~P~RIT~ell~~Lk~~~~--~~v~~h~nh----------p~Eit~~a~~Al~~L~~a  244 (417)
T TIGR03820       177 ILTELRAIPHVEVIRIGTRVPVVLPQRITDELVAILKKHHP--VWLNTHFNH----------PREITASSKKALAKLADA  244 (417)
T ss_pred             HHHHHhhcCCCceEEEeeccccccccccCHHHHHHHHhcCC--eEEEEeCCC----------hHhChHHHHHHHHHHHHc
Confidence            4566667776653332 22      1   122344455654  444334332          224456677888899999


Q ss_pred             CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCC--CEEEEccCcCcCC----H-HHHHHHHHHHHhhCCC
Q 015894          226 SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGC--SEISLGDTIGVGT----P-GTVIPMLEAVLDAVPV  292 (398)
Q Consensus       226 G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Ga--d~I~L~DT~G~~~----P-~~v~~lv~~l~~~~p~  292 (398)
                      |+.+...-...-|-.    -+++.+.++.+.+.++|+  ..+..+|-+....    | .+..++++.++.+.++
T Consensus       245 GI~l~nQsVLLkGVN----D~~~~l~~L~~~L~~~gV~PYYl~~~d~v~G~~hFrv~~~~g~~I~~~lr~~~sG  314 (417)
T TIGR03820       245 GIPLGNQSVLLAGVN----DCPRIMKKLVHKLVANRVRPYYLYQCDLSEGLSHFRTPVGKGIEIIESLIGHTSG  314 (417)
T ss_pred             CCEEEeeceEECCcC----CCHHHHHHHHHHHHHCCCeeceeeeccCCCCcccccCcHHHHHHHHHHHHHhCCC
Confidence            998753222222211    367889999999999997  4788899776543    3 5678899999998765

This model describes lysine-2,3-aminomutase as found along with beta-lysine acetyltransferase in a two-enzyme pathway for making the compatible solute N-epsilon-acetyl-beta-lysine. This compatible solute, or osmolyte, is known to protect a number of methanogenic archaea against salt stress. The trusted cutoff distinguishes a tight clade with essentially full-length homology from additional homologs that are shorter or highly diverged in the C-terminal region. All members of this family have the radical SAM motif CXXXCXXC, while some but not all have a second copy of the motif in the C-terminal region.

>TIGR02321 Pphn_pyruv_hyd phosphonopyruvate hydrolase

Probab=85.13  E-value=18  Score=35.99  Aligned_cols=134  Identities=19%  Similarity=0.103  Sum_probs=81.5

Q ss_pred             hHHHHHHcCCCEEEEeccCchHHHhhhc----CCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH
Q 015894          177 GFEAAVAAGAKEVAIFASASESFSKSNI----NCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAY  252 (398)
Q Consensus       177 ~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~----~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~  252 (398)
                      ..+.+.++|.+-+.+.-  .-+-....+    ..+.++.++.++++++..   .++|.+.+-.-||       ++..+..
T Consensus        27 SAri~e~aGf~ai~~ss--~~va~slG~pD~g~l~~~e~~~~~~~I~~~~---~lPv~aD~d~GyG-------~~~~v~~   94 (290)
T TIGR02321        27 VAKLAEQAGFGGIWGSG--FELSASYAVPDANILSMSTHLEMMRAIASTV---SIPLIADIDTGFG-------NAVNVHY   94 (290)
T ss_pred             HHHHHHHcCCCEEEECH--HHHHHHCCCCCcccCCHHHHHHHHHHHHhcc---CCCEEEECCCCCC-------CcHHHHH
Confidence            34555667888666521  111100111    246778888776666543   6777654442222       2336888


Q ss_pred             HHHHHHhCCCCEEEEccCc----------C---cCCHHHHHHHHHHHHhhCCCCeEEEEeC-------CccchHHHHHHH
Q 015894          253 VSKQLYDMGCSEISLGDTI----------G---VGTPGTVIPMLEAVLDAVPVDKLAVHFH-------DTYGQALSNILA  312 (398)
Q Consensus       253 ~a~~l~~~Gad~I~L~DT~----------G---~~~P~~v~~lv~~l~~~~p~~~l~~H~H-------nd~GlA~ANala  312 (398)
                      .++++.++|+..|.|-|.+          |   +..++++.+.|++.++.-.+..+-+=.-       ...--|+.-+.+
T Consensus        95 tV~~~~~aGvagi~IEDq~~pk~cg~~~~g~~~l~~~ee~~~kI~Aa~~a~~~~d~~I~ARTDa~~~~~g~deAI~Ra~a  174 (290)
T TIGR02321        95 VVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLGQQEAVRRGQA  174 (290)
T ss_pred             HHHHHHHcCCeEEEEeCCCCCcccccccCCCccccCHHHHHHHHHHHHHhCCCCCEEEEEEeccccccCCHHHHHHHHHH
Confidence            8999999999999999974          2   3466777777877776432212222111       123468888888


Q ss_pred             HHHhCCCEEe
Q 015894          313 SLQMGISTVD  322 (398)
Q Consensus       313 Al~aGa~~VD  322 (398)
                      -.+||||.|=
T Consensus       175 Y~eAGAD~if  184 (290)
T TIGR02321       175 YEEAGADAIL  184 (290)
T ss_pred             HHHcCCCEEE
Confidence            9999999663

This family consists of phosphonopyruvate hydrolase, an enzyme closely related to phosphoenolpyruvate phosphomutase. It cleaves the direct C-P bond of phosphonopyruvate. The characterized example is from Variovorax sp. Pal2.

>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional

Probab=85.12  E-value=19  Score=35.85  Aligned_cols=90  Identities=16%  Similarity=0.211  Sum_probs=59.3

Q ss_pred             HHHHHHHHH-hccCCcEEEEeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEE
Q 015894          153 AKDVMAAIQ-NVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRG  231 (398)
Q Consensus       153 ~~~v~~~i~-~~~~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~  231 (398)
                      ..+.+..++ ..|..++.+-+.+.++++.|+++|+|.|.+ +           |++    .+.++++++..++.+..+. 
T Consensus       186 i~~ai~~~r~~~~~~kIeVEv~tl~ea~eal~~gaDiI~L-D-----------nm~----~e~vk~av~~~~~~~~~v~-  248 (289)
T PRK07896        186 VVAALRAVRAAAPDLPCEVEVDSLEQLDEVLAEGAELVLL-D-----------NFP----VWQTQEAVQRRDARAPTVL-  248 (289)
T ss_pred             HHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHHcCCCEEEe-C-----------CCC----HHHHHHHHHHHhccCCCEE-
Confidence            334444455 356667788889999999999999999987 2           223    3445566666666555543 


Q ss_pred             EEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccC
Q 015894          232 YLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDT  270 (398)
Q Consensus       232 ~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT  270 (398)
                       +..      ++-.+++.+.+++    +.|+|.|...--
T Consensus       249 -iea------SGGI~~~ni~~yA----~tGvD~Is~gal  276 (289)
T PRK07896        249 -LES------SGGLTLDTAAAYA----ETGVDYLAVGAL  276 (289)
T ss_pred             -EEE------ECCCCHHHHHHHH----hcCCCEEEeChh
Confidence             221      2346787777765    589999987543

>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2

Probab=85.07  E-value=26  Score=35.21  Aligned_cols=121  Identities=17%  Similarity=0.205  Sum_probs=73.7

Q ss_pred             CHHHHHHHHHHHHHHHHhCCCcEEEEEeeeec--C------CC------------C-----CCCCH-------HHHHHHH
Q 015894          207 TIEDSLIRYRDVALAARELSIPVRGYLSCVVG--C------PV------------E-----GMVPP-------SKVAYVS  254 (398)
Q Consensus       207 s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg--~------~~------------~-----~r~~~-------~~l~~~a  254 (398)
                      ..++.++.++++++.++++|-.+.+.|...-.  .      +.            .     ...+.       +.+.+.+
T Consensus        76 ~~d~~i~~~~~l~~~vh~~G~~~~~Ql~h~G~~~~~~~~~~~~~ps~~~~~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA  155 (338)
T cd04733          76 ESGEDLEAFREWAAAAKANGALIWAQLNHPGRQSPAGLNQNPVAPSVALDPGGLGKLFGKPRAMTEEEIEDVIDRFAHAA  155 (338)
T ss_pred             CCHHHHHHHHHHHHHHHhcCCEEEEEccCCCcCCCccCCCCCcCCCCCcCcccccccCCCCCcCCHHHHHHHHHHHHHHH
Confidence            34566788888888888888887665554100  0      00            0     01122       3444567


Q ss_pred             HHHHhCCCCEEEE--c-----------------cCcCcC---CHHHHHHHHHHHHhhCC-CCeEEEEeCCc----cchH-
Q 015894          255 KQLYDMGCSEISL--G-----------------DTIGVG---TPGTVIPMLEAVLDAVP-VDKLAVHFHDT----YGQA-  306 (398)
Q Consensus       255 ~~l~~~Gad~I~L--~-----------------DT~G~~---~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd----~GlA-  306 (398)
                      +.+.++|.|.|.|  +                 |-.|..   .+.-+.++|+++|+.++ +.+|.+-.+-+    .|+. 
T Consensus       156 ~ra~~aGfDgVeih~a~gyLl~qFlsp~~N~R~D~yGGslenR~rf~~EiI~aIR~avG~d~~v~vris~~~~~~~g~~~  235 (338)
T cd04733         156 RLAQEAGFDGVQIHAAHGYLLSQFLSPLTNKRTDEYGGSLENRARLLLEIYDAIRAAVGPGFPVGIKLNSADFQRGGFTE  235 (338)
T ss_pred             HHHHHcCCCEEEEchhhhhHHHHhcCCcCCCCCccCCCCHHHHHHHHHHHHHHHHHHcCCCCeEEEEEcHHHcCCCCCCH
Confidence            7778899998876  2                 444532   24557789999999985 56788877621    2332 


Q ss_pred             ---HHHHHHHHHhCCCEEeecccc
Q 015894          307 ---LSNILASLQMGISTVDSSVSG  327 (398)
Q Consensus       307 ---~ANalaAl~aGa~~VD~Sv~G  327 (398)
                         +.-+-..-++|++.|+++...
T Consensus       236 eea~~ia~~Le~~Gvd~iev~~g~  259 (338)
T cd04733         236 EDALEVVEALEEAGVDLVELSGGT  259 (338)
T ss_pred             HHHHHHHHHHHHcCCCEEEecCCC
Confidence               222222235799999988654

Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.

>cd00502 DHQase_I Type I 3-dehydroquinase, (3-dehydroquinate dehydratase or DHQase

Probab=85.05  E-value=34  Score=32.15  Aligned_cols=185  Identities=12%  Similarity=0.116  Sum_probs=103.0

Q ss_pred             CCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCCH-h-------------hHHHHHHcCCCEEEEeccCch
Q 015894          132 GLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNL-K-------------GFEAAVAAGAKEVAIFASASE  197 (398)
Q Consensus       132 Gv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n~-~-------------~ie~a~~~Gv~~v~i~~~~Sd  197 (398)
                      |+|.||+=...-...  ...+..+.++.+++..+..+..-+|.. +             =++.+++.|++.|.+-...  
T Consensus        24 ~aD~vElR~D~~~~~--~~~~~~~~~~~lr~~~~~piI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~d~vDiEl~~--   99 (225)
T cd00502          24 GADAVELRVDLLEDP--SIDDVAEQLSLLRELTPLPIIFTVRTKSEGGNFEGSEEEYLELLEEALKLGPDYVDIELDS--   99 (225)
T ss_pred             CCCEEEEEEeecccc--chHHHHHHHHHHHHhCCCCEEEEEcccccCCCcCCCHHHHHHHHHHHHHHCCCEEEEEecc--
Confidence            999999965321110  011233445555543334444333421 1             1456778889999885432  


Q ss_pred             HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHH
Q 015894          198 SFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPG  277 (398)
Q Consensus       198 ~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~  277 (398)
                                     +...+.++.+++.+.++-+..=. |    ....+.+.+....+.+...|+|.+-++=+.-  .+.
T Consensus       100 ---------------~~~~~~~~~~~~~~~kiI~S~H~-f----~~tp~~~~l~~~~~~~~~~gadivKla~~~~--~~~  157 (225)
T cd00502         100 ---------------ALLEELINSRKKGNTKIIGSYHD-F----SGTPSDEELVSRLEKMAALGADIVKIAVMAN--SIE  157 (225)
T ss_pred             ---------------hHHHHHHHHHHhCCCEEEEEecc-C----CCCcCHHHHHHHHHHHHHhCCCEEEEEecCC--CHH
Confidence                           23445566666777776532211 1    1112467888899999999999988876533  377


Q ss_pred             HHHHHHHHHHhh--CCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q 015894          278 TVIPMLEAVLDA--VPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLN  351 (398)
Q Consensus       278 ~v~~lv~~l~~~--~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~  351 (398)
                      ++.++++...+.  .+..|+-.-.=-..|  ...=+.+-..|....-+++.   + |-   ..|+.+++++...++
T Consensus       158 D~~~ll~~~~~~~~~~~~p~i~~~MG~~G--~~SRil~~~~gs~~t~~~~~---~-~s---ApGQ~~~~~l~~~~~  224 (225)
T cd00502         158 DNLRLLKFTRQVKNLYDIPLIAINMGELG--KLSRILSPVFGSPLTYASLP---E-PS---APGQLSVEELKQALS  224 (225)
T ss_pred             HHHHHHHHHHHHHhcCCCCEEEEEcCCCC--chhhccccccCCcccccCCC---C-CC---CCCCcCHHHHHHHHh
Confidence            777777766543  122344332211122  22333334466666555553   3 33   466999988876653

) Catalyzes the cis-dehydration of 3-dehydroquinate via a covalent imine intermediate to produce dehydroshikimate. Dehydroquinase is the third enzyme in the shikimate pathway, which is involved in the biosynthesis of aromatic amino acids. Type I DHQase exists as a homodimer. Type II 3-dehydroquinase also catalyzes the same overall reaction, but is unrelated in terms of sequence and structure, and utilizes a completely different reaction mechanism.

>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional

Probab=84.98  E-value=35  Score=32.19  Aligned_cols=198  Identities=15%  Similarity=0.099  Sum_probs=104.4

Q ss_pred             HHHHHHHHHHHhcCCCEEEEecCCC-CCcccCCCCHHHHHHHHHhccCCcEEEE--eCCHhhHHHHHHcCCCEEEEeccC
Q 015894          119 VVKVELIKLLVSSGLAVVEATSFVS-PKWVPQLADAKDVMAAIQNVEGARFPVL--TPNLKGFEAAVAAGAKEVAIFASA  195 (398)
Q Consensus       119 ~~k~~ia~~L~~aGv~~IEvG~~~~-~~~~p~~~D~~~v~~~i~~~~~~~l~~l--~~n~~~ie~a~~~Gv~~v~i~~~~  195 (398)
                      ..-+++++.+.+.|++.+-+--... ...  ...+.+.+.+..+. .++.+.+=  .++.++++.++++|++.|.+-...
T Consensus        32 ~~~~e~a~~~~~~G~~~l~i~dl~~~~~~--~~~~~~~i~~i~~~-~~~~l~v~GGi~~~~~~~~~~~~Ga~~v~iGs~~  108 (241)
T PRK13585         32 GDPVEVAKRWVDAGAETLHLVDLDGAFEG--ERKNAEAIEKIIEA-VGVPVQLGGGIRSAEDAASLLDLGVDRVILGTAA  108 (241)
T ss_pred             CCHHHHHHHHHHcCCCEEEEEechhhhcC--CcccHHHHHHHHHH-cCCcEEEcCCcCCHHHHHHHHHcCCCEEEEChHH
Confidence            3567889999999999886642211 100  01223333333332 23444332  267889999999999998874321


Q ss_pred             chHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEeee----ecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccC
Q 015894          196 SESFSKSNINCTIEDSLIRYRDVALAARELSI-PVRGYLSCV----VGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDT  270 (398)
Q Consensus       196 Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~-~v~~~l~~~----fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT  270 (398)
                      -             +..+.+.+++   +..|. .+.+.+.+-    ....+... +...+.++++.+.+.|++.|.+-|+
T Consensus       109 ~-------------~~~~~~~~i~---~~~g~~~i~~sid~~~~~v~~~g~~~~-~~~~~~~~~~~~~~~G~~~i~~~~~  171 (241)
T PRK13585        109 V-------------ENPEIVRELS---EEFGSERVMVSLDAKDGEVVIKGWTEK-TGYTPVEAAKRFEELGAGSILFTNV  171 (241)
T ss_pred             h-------------hChHHHHHHH---HHhCCCcEEEEEEeeCCEEEECCCccc-CCCCHHHHHHHHHHcCCCEEEEEee
Confidence            0             0112222222   33332 222222210    00000000 1124566788888999999998776


Q ss_pred             --cCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHH
Q 015894          271 --IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVY  348 (398)
Q Consensus       271 --~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~  348 (398)
                        .|...+.. .++++.+++..+ +|+-.-+.=..   ..++....++||+.|=+.-.-+.         +.-.+++++.
T Consensus       172 ~~~g~~~g~~-~~~i~~i~~~~~-iPvia~GGI~~---~~di~~~~~~Ga~gv~vgsa~~~---------~~~~~~~~~~  237 (241)
T PRK13585        172 DVEGLLEGVN-TEPVKELVDSVD-IPVIASGGVTT---LDDLRALKEAGAAGVVVGSALYK---------GKFTLEEAIE  237 (241)
T ss_pred             cCCCCcCCCC-HHHHHHHHHhCC-CCEEEeCCCCC---HHHHHHHHHcCCCEEEEEHHHhc---------CCcCHHHHHH
Confidence              55555533 345777777664 46666554331   23444557789987644333232         2445666655


Q ss_pred             HH
Q 015894          349 ML  350 (398)
Q Consensus       349 ~L  350 (398)
                      ++
T Consensus       238 ~~  239 (241)
T PRK13585        238 AV  239 (241)
T ss_pred             Hh
Confidence            54

>PRK05926 hypothetical protein; Provisional

Probab=84.93  E-value=14  Score=37.82  Aligned_cols=77  Identities=12%  Similarity=0.166  Sum_probs=56.5

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcCcC---CHHHHHHHHHHHHhhCCCCeEEEEeC---------CccchHHHHH
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGVG---TPGTVIPMLEAVLDAVPVDKLAVHFH---------DTYGQALSNI  310 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~---~P~~v~~lv~~l~~~~p~~~l~~H~H---------nd~GlA~ANa  310 (398)
                      ...+++++.+.++++ +.|+.+|+|..  |..   ..+.+.++++.+++.+|+  +.+|.-         +..|+...-.
T Consensus        97 ~~ls~eeI~~~a~~a-~~G~~ei~iv~--G~~p~~~~e~~~e~i~~Ik~~~p~--i~i~a~s~~Ei~~~~~~~~~~~~e~  171 (370)
T PRK05926         97 WFYTPDQLVQSIKEN-PSPITETHIVA--GCFPSCNLAYYEELFSKIKQNFPD--LHIKALTAIEYAYLSKLDNLPVKEV  171 (370)
T ss_pred             ccCCHHHHHHHHHHH-hcCCCEEEEEe--CcCCCCCHHHHHHHHHHHHHhCCC--eeEEECCHHHHHHHHhhcCCCHHHH
Confidence            346789999999988 79999999994  554   236678899999999986  455533         3445666776


Q ss_pred             HHHHH-hCCCEEeec
Q 015894          311 LASLQ-MGISTVDSS  324 (398)
Q Consensus       311 laAl~-aGa~~VD~S  324 (398)
                      +..++ ||++.+...
T Consensus       172 l~~LkeAGl~~~~g~  186 (370)
T PRK05926        172 LQTLKIAGLDSIPGG  186 (370)
T ss_pred             HHHHHHcCcCccCCC
Confidence            77775 799877643

>TIGR00433 bioB biotin synthetase

Probab=84.88  E-value=4  Score=39.73  Aligned_cols=21  Identities=19%  Similarity=0.430  Sum_probs=11.6

Q ss_pred             HHHHHHhCCCEEeeccccCCC
Q 015894          310 ILASLQMGISTVDSSVSGLGG  330 (398)
Q Consensus       310 alaAl~aGa~~VD~Sv~GlGe  330 (398)
                      .-.+.++|....-.-+.|+|+
T Consensus       164 i~~l~~~Gi~v~~~~i~Gl~e  184 (296)
T TIGR00433       164 LENAKKAGLKVCSGGIFGLGE  184 (296)
T ss_pred             HHHHHHcCCEEEEeEEEeCCC
Confidence            334446777644444667765

Catalyzes the last step of the biotin biosynthesis pathway.

>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2

Probab=84.81  E-value=12  Score=34.14  Aligned_cols=89  Identities=22%  Similarity=0.258  Sum_probs=55.7

Q ss_pred             CHHHHHHHHHh-ccCC-cEEEEeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcE
Q 015894          152 DAKDVMAAIQN-VEGA-RFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPV  229 (398)
Q Consensus       152 D~~~v~~~i~~-~~~~-~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v  229 (398)
                      +..+....+++ .|.. ++.+=+.+.++++.++++|+|.|++= ..           ++    +.++++++..++.+..+
T Consensus        65 ~i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~~g~d~I~lD-~~-----------~~----~~~~~~v~~l~~~~~~v  128 (169)
T PF01729_consen   65 GIEEAVKAARQAAPEKKKIEVEVENLEEAEEALEAGADIIMLD-NM-----------SP----EDLKEAVEELRELNPRV  128 (169)
T ss_dssp             SHHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHTT-SEEEEE-S------------CH----HHHHHHHHHHHHHTTTS
T ss_pred             CHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHHhCCCEEEec-Cc-----------CH----HHHHHHHHHHhhcCCcE
Confidence            44555666664 4544 35555689999999999999999982 22           22    45567777777776665


Q ss_pred             EEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 015894          230 RGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG  268 (398)
Q Consensus       230 ~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~  268 (398)
                      ...++        +-.+++.+.+++    +.|+|.|.+.
T Consensus       129 ~ie~S--------GGI~~~ni~~ya----~~gvD~isvg  155 (169)
T PF01729_consen  129 KIEAS--------GGITLENIAEYA----KTGVDVISVG  155 (169)
T ss_dssp             EEEEE--------SSSSTTTHHHHH----HTT-SEEEEC
T ss_pred             EEEEE--------CCCCHHHHHHHH----hcCCCEEEcC
Confidence            53333        224566655554    5899988765

4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....

>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional

Probab=84.78  E-value=39  Score=35.66  Aligned_cols=144  Identities=14%  Similarity=0.110  Sum_probs=81.5

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEec-----C-CC-CCc-ccCCCCHHHHHHHHHhc-cCC--cEEEEeCC---HhhHHH
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATS-----F-VS-PKW-VPQLADAKDVMAAIQNV-EGA--RFPVLTPN---LKGFEA  180 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~-----~-~~-~~~-~p~~~D~~~v~~~i~~~-~~~--~l~~l~~n---~~~ie~  180 (398)
                      ..+.+..++-++.|.+.|+..|-+..     + .. ... .+...+..++++.+... ++.  ++.+..+.   .+-++.
T Consensus       196 srs~e~Vv~Ei~~l~~~g~~eI~l~~~~~~~y~~d~~~~~~~~~~~l~~Ll~~l~~~~~~~~ir~~~~~p~~l~~ell~~  275 (467)
T PRK14329        196 SRDPESILNEVRDLFAKGYKEVTLLGQNVDSYLWYGGGLKKDEAVNFAQLLEMVAEAVPDMRIRFSTSHPKDMTDDVLEV  275 (467)
T ss_pred             cCCHHHHHHHHHHHHHCCCeEEEEEeecccccccccCCccccccccHHHHHHHHHhcCCCcEEEEecCCcccCCHHHHHH
Confidence            46788888888889888998776531     1 10 000 00012344555555432 333  33333232   334566


Q ss_pred             HHHc--CCCEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 015894          181 AVAA--GAKEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSK  255 (398)
Q Consensus       181 a~~~--Gv~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~  255 (398)
                      ..+.  |...|++-+ +.||.-++ .+|+.  -..+.+.++++.+++.  ++.+..+++  +|.|.+   +.+.+.+.++
T Consensus       276 m~~~~~g~~~i~iglQSgsd~vLk-~m~R~--~t~~~~~~~i~~ir~~~~~~~i~~d~I--vGfPgE---T~edf~~tl~  347 (467)
T PRK14329        276 MAKYDNICKHIHLPVQSGSDRILK-LMNRK--YTREWYLDRIDAIRRIIPDCGISTDMI--AGFPTE---TEEDHQDTLS  347 (467)
T ss_pred             HHhCCCCCCeEEeCCCcCCHHHHH-hcCCC--CCHHHHHHHHHHHHHhCCCCEEEEeEE--EeCCCC---CHHHHHHHHH
Confidence            6665  788888854 44444333 34442  1123445566777776  455665555  777865   5677777788


Q ss_pred             HHHhCCCCEEE
Q 015894          256 QLYDMGCSEIS  266 (398)
Q Consensus       256 ~l~~~Gad~I~  266 (398)
                      .+.+.+.+.+.
T Consensus       348 ~i~~l~~~~~~  358 (467)
T PRK14329        348 LMEEVGYDFAF  358 (467)
T ss_pred             HHHhhCCCeEe
Confidence            88888877643

>TIGR00262 trpA tryptophan synthase, alpha subunit

Probab=84.75  E-value=40  Score=32.70  Aligned_cols=151  Identities=17%  Similarity=0.162  Sum_probs=88.5

Q ss_pred             HHHHHHcCCCEEEEeccCchHHHh-----------hhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCC
Q 015894          178 FEAAVAAGAKEVAIFASASESFSK-----------SNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGM  244 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~Sd~~~~-----------~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r  244 (398)
                      ++...+.|+|.|-+-++.||....           ..-|.+.++.+    +.++..|+.  .+++. .+++ + +|.. .
T Consensus        30 ~~~l~~~Gad~iElGiPfsDP~aDGpvIq~a~~~al~~G~~~~~~~----~~v~~ir~~~~~~plv-~m~Y-~-Npi~-~  101 (256)
T TIGR00262        30 IKTLIEAGADALELGVPFSDPLADGPTIQAADLRALRAGMTPEKCF----ELLKKVRQKHPNIPIG-LLTY-Y-NLIF-R  101 (256)
T ss_pred             HHHHHHcCCCEEEECCCCCCCCCcCHHHHHHHHHHHHcCCCHHHHH----HHHHHHHhcCCCCCEE-EEEe-c-cHHh-h
Confidence            455677899999999988886211           12234444444    344555543  55543 2332 2 2211 1


Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894          245 VPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       245 ~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S  324 (398)
                      +.   +.++++.+.++|++.|.+.|-    .+++..++++.+++.-.  .+.+=+-.+.-..-...+++...|.-++= |
T Consensus       102 ~G---~e~f~~~~~~aGvdgviipDl----p~ee~~~~~~~~~~~gl--~~i~lv~P~T~~eri~~i~~~~~gfiy~v-s  171 (256)
T TIGR00262       102 KG---VEEFYAKCKEVGVDGVLVADL----PLEESGDLVEAAKKHGV--KPIFLVAPNADDERLKQIAEKSQGFVYLV-S  171 (256)
T ss_pred             hh---HHHHHHHHHHcCCCEEEECCC----ChHHHHHHHHHHHHCCC--cEEEEECCCCCHHHHHHHHHhCCCCEEEE-E
Confidence            11   234677788999999999994    55788889999887632  33444444444444455555555665543 3


Q ss_pred             cccCCCCCCCCCCC--CCccHHHHHHHHHh
Q 015894          325 VSGLGGCPYAKGAS--GNVATEDVVYMLNG  352 (398)
Q Consensus       325 v~GlGecp~a~gra--GNa~lE~vv~~L~~  352 (398)
                      +.|..+      ..  =+..+.+.+..+++
T Consensus       172 ~~G~TG------~~~~~~~~~~~~i~~lr~  195 (256)
T TIGR00262       172 RAGVTG------ARNRAASALNELVKRLKA  195 (256)
T ss_pred             CCCCCC------CcccCChhHHHHHHHHHh
Confidence            457765      32  23567777777775

Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.

>TIGR02631 xylA_Arthro xylose isomerase, Arthrobacter type

Probab=84.69  E-value=52  Score=33.93  Aligned_cols=219  Identities=17%  Similarity=0.154  Sum_probs=103.3

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCH---HHHHHHHHh-c--cCCcEEEEeCCHhhHHHHHHcCCCEEE
Q 015894          117 PAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADA---KDVMAAIQN-V--EGARFPVLTPNLKGFEAAVAAGAKEVA  190 (398)
Q Consensus       117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~---~~v~~~i~~-~--~~~~l~~l~~n~~~ie~a~~~Gv~~v~  190 (398)
                      +.-+-.+.++.+.++|++.||+....   ..|--.+.   +...+.+++ +  .+.++.+++.|...-.. ...|    .
T Consensus        30 ~~~~~~e~i~~la~~GfdgVE~~~~d---l~P~~~~~~e~~~~~~~lk~~L~~~GL~v~~v~~nl~~~~~-~~~g----~  101 (382)
T TIGR02631        30 TALDPVEAVHKLAELGAYGVTFHDDD---LIPFGAPPQERDQIVRRFKKALDETGLKVPMVTTNLFSHPV-FKDG----G  101 (382)
T ss_pred             CCcCHHHHHHHHHHhCCCEEEecccc---cCCCCCChhHHHHHHHHHHHHHHHhCCeEEEeeccccCCcc-ccCC----C
Confidence            33455788999999999999986311   11110111   111223331 1  24555555444210000 0001    1


Q ss_pred             EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCH--------HHHHHHHHHHHhCCC
Q 015894          191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPP--------SKVAYVSKQLYDMGC  262 (398)
Q Consensus       191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~--------~~l~~~a~~l~~~Ga  262 (398)
                      + .+.++-        .++.+++.+++.+++|+++|-+..+.+....+.+.....+.        +.+..+++.+.+.|.
T Consensus       102 l-as~d~~--------vR~~ai~~~kraId~A~eLGa~~v~v~~G~~g~~~~~~~d~~~a~~~~~e~L~~lae~A~~~G~  172 (382)
T TIGR02631       102 F-TSNDRS--------VRRYALRKVLRNMDLGAELGAETYVVWGGREGAEYDGAKDVRAALDRMREALNLLAAYAEDQGY  172 (382)
T ss_pred             C-CCCCHH--------HHHHHHHHHHHHHHHHHHhCCCEEEEccCCCCCcCccccCHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            1 111111        24678899999999999999975322221111010111111        223334444455442


Q ss_pred             C-EEEEccC-----cC--cCCHHHHHHHHHHHHhhCCC---CeEEE-EeCCccchHHHHHHHHHHhCCCEEeeccccC-C
Q 015894          263 S-EISLGDT-----IG--VGTPGTVIPMLEAVLDAVPV---DKLAV-HFHDTYGQALSNILASLQMGISTVDSSVSGL-G  329 (398)
Q Consensus       263 d-~I~L~DT-----~G--~~~P~~v~~lv~~l~~~~p~---~~l~~-H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~Gl-G  329 (398)
                      . .|.|-=.     .+  +-++.++..+++.+-  .|+   +.+.+ |. +-.|.-++.+++-...+-+.+++=++.. |
T Consensus       173 GV~laLEp~p~~~~~~~ll~T~~~al~li~~v~--~pn~vgl~lDvgH~-~~~g~n~~~~i~~~l~~~kl~HvhlnD~~g  249 (382)
T TIGR02631       173 GLRFALEPKPNEPRGDILLPTVGHALAFIETLE--RPELFGLNPETGHE-QMAGLNFTHGIAQALWAGKLFHIDLNGQRG  249 (382)
T ss_pred             CcEEEEccCCCCCCcceecCCHHHHHHHHHHcC--CccceeEEEechhH-hhcCCCHHHHHHHHHhCCCEEEEecCCCCC
Confidence            2 3444211     11  345566777776653  243   12333 32 3344444555542222445555555542 2


Q ss_pred             C---CCCCCCCCCCccHH-HHHHHHHhCCCC
Q 015894          330 G---CPYAKGASGNVATE-DVVYMLNGLGVR  356 (398)
Q Consensus       330 e---cp~a~graGNa~lE-~vv~~L~~~Gi~  356 (398)
                      +   .-.+. +.|+.... +++..|++.|++
T Consensus       250 ~~~D~hL~~-G~G~l~~~~~~l~~L~~~GY~  279 (382)
T TIGR02631       250 IKFDQDLRF-GHGDLKAAFFLVDLLESGGYQ  279 (382)
T ss_pred             CCccCCcCC-CCCCHHHHHHHHHHHHHCCCC
Confidence            1   11122 48899988 599999987664

This model describes a D-xylose isomerase that is also active as a D-glucose isomerase. It is tetrameric and dependent on a divalent cation Mg2+, Co2+ or Mn2+ as characterized in Arthrobacter. Members of this family differ substantially from the D-xylose isomerases of family TIGR02630.

>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial

Probab=84.65  E-value=31  Score=34.38  Aligned_cols=122  Identities=20%  Similarity=0.208  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC-CCCEEEEccCcCcCCHHHHHHHHHHHHhh-C
Q 015894          213 IRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM-GCSEISLGDTIGVGTPGTVIPMLEAVLDA-V  290 (398)
Q Consensus       213 ~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~-Gad~I~L~DT~G~~~P~~v~~lv~~l~~~-~  290 (398)
                      +.+.++++.+.+.|+.. +.++  -|-|. -+   ..+.++++.+.+. |...+.+ -|.|.+.+.    .+..+++. +
T Consensus        46 eei~~~i~~~~~~gv~~-V~lt--GGEPl-l~---~~l~~li~~i~~~~gi~~v~i-tTNG~ll~~----~~~~L~~~gl  113 (334)
T TIGR02666        46 EEIERLVRAFVGLGVRK-VRLT--GGEPL-LR---KDLVELVARLAALPGIEDIAL-TTNGLLLAR----HAKDLKEAGL  113 (334)
T ss_pred             HHHHHHHHHHHHCCCCE-EEEE--Ccccc-cc---CCHHHHHHHHHhcCCCCeEEE-EeCchhHHH----HHHHHHHcCC
Confidence            34455667777778642 2232  23332 12   2355566666553 6656666 678887765    34444443 2


Q ss_pred             CCCeEEEEeCCc------------cchHHHHHHHHHHhCCC--EEeeccccCCCCCCCCCCCCCc-cHHHHHHHHHhCCC
Q 015894          291 PVDKLAVHFHDT------------YGQALSNILASLQMGIS--TVDSSVSGLGGCPYAKGASGNV-ATEDVVYMLNGLGV  355 (398)
Q Consensus       291 p~~~l~~H~Hnd------------~GlA~ANalaAl~aGa~--~VD~Sv~GlGecp~a~graGNa-~lE~vv~~L~~~Gi  355 (398)
                      ..+.|.+|+.+.            +...+.+...+.++|..  .+++.+. -|.         |. .+++++..+++.|+
T Consensus       114 ~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~G~~~v~in~vv~-~g~---------n~~ei~~l~~~~~~~gv  183 (334)
T TIGR02666       114 KRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAAGLEPVKLNTVVM-RGV---------NDDEIVDLAEFAKERGV  183 (334)
T ss_pred             CeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHcCCCcEEEEEEEe-CCC---------CHHHHHHHHHHHHhcCC
Confidence            234566665332            23345555566678876  3343322 222         33 46677777777776


Q ss_pred             C
Q 015894          356 R  356 (398)
Q Consensus       356 ~  356 (398)
                      +
T Consensus       184 ~  184 (334)
T TIGR02666       184 T  184 (334)
T ss_pred             e
Confidence            4

The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.

>PRK09058 coproporphyrinogen III oxidase; Provisional

Probab=84.52  E-value=23  Score=37.18  Aligned_cols=107  Identities=15%  Similarity=0.118  Sum_probs=66.7

Q ss_pred             HHHHHHHHh-cc---CCcEEEEeC----CHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC
Q 015894          154 KDVMAAIQN-VE---GARFPVLTP----NLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAREL  225 (398)
Q Consensus       154 ~~v~~~i~~-~~---~~~l~~l~~----n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~  225 (398)
                      ..+++.+++ .+   +..+++=++    +.+-++...++|+.+|.+-+-.-+-...+.+|+.  ...+.+.+.++.+++.
T Consensus       134 ~~ll~~i~~~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf~d~vLk~lgR~--~~~~~~~~~i~~l~~~  211 (449)
T PRK09058        134 ARLITALREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQSFNTQVRRRAGRK--DDREEVLARLEELVAR  211 (449)
T ss_pred             HHHHHHHHHhCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcCCHHHHHHhCCC--CCHHHHHHHHHHHHhC
Confidence            445555553 22   445555442    3456788889999998885543222233334442  1233445667888888


Q ss_pred             C-CcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE
Q 015894          226 S-IPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL  267 (398)
Q Consensus       226 G-~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L  267 (398)
                      | ..|.+.++  +|.|..   +.+.+.+-++.+.+.|++.|.+
T Consensus       212 g~~~v~~DlI--~GlPgq---T~e~~~~~l~~~~~l~~~~is~  249 (449)
T PRK09058        212 DRAAVVCDLI--FGLPGQ---TPEIWQQDLAIVRDLGLDGVDL  249 (449)
T ss_pred             CCCcEEEEEE--eeCCCC---CHHHHHHHHHHHHhcCCCEEEE
Confidence            8 56766665  777754   5677888888889999987754

>PRK14024 phosphoribosyl isomerase A; Provisional

Probab=84.48  E-value=39  Score=32.29  Aligned_cols=196  Identities=15%  Similarity=0.138  Sum_probs=102.8

Q ss_pred             HHHHHHHHHHhcCCCEEEEecC-CCCCcccCCCCHHHHHHHHHhccCCcEEE--EeCCHhhHHHHHHcCCCEEEEeccCc
Q 015894          120 VKVELIKLLVSSGLAVVEATSF-VSPKWVPQLADAKDVMAAIQNVEGARFPV--LTPNLKGFEAAVAAGAKEVAIFASAS  196 (398)
Q Consensus       120 ~k~~ia~~L~~aGv~~IEvG~~-~~~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~n~~~ie~a~~~Gv~~v~i~~~~S  196 (398)
                      +-+++++.+.+.|++.|=+-=. .....    .+..+++..+.+..+.++++  =.++.++++.+++.|++.+.+-..  
T Consensus        33 dp~~~a~~~~~~g~~~l~ivDLd~~~g~----~~n~~~i~~i~~~~~~pv~vgGGirs~edv~~~l~~Ga~kvviGs~--  106 (241)
T PRK14024         33 SPLDAALAWQRDGAEWIHLVDLDAAFGR----GSNRELLAEVVGKLDVKVELSGGIRDDESLEAALATGCARVNIGTA--  106 (241)
T ss_pred             CHHHHHHHHHHCCCCEEEEEeccccCCC----CccHHHHHHHHHHcCCCEEEcCCCCCHHHHHHHHHCCCCEEEECch--
Confidence            5678999999999886555311 11111    11224444443323444443  347899999999999998765322  


Q ss_pred             hHHHhhhcCCCHHHHHHHHHHHHHHHHhC---CCcEEE-EEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccC--
Q 015894          197 ESFSKSNINCTIEDSLIRYRDVALAAREL---SIPVRG-YLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDT--  270 (398)
Q Consensus       197 d~~~~~~~~~s~~~~l~~~~~~v~~ak~~---G~~v~~-~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT--  270 (398)
                       ..          +..+.+.++++...+.   ++.+.. .+.  .   .....+...+.++++.+.+.|++.|.+-|-  
T Consensus       107 -~l----------~~p~l~~~i~~~~~~~i~vsld~~~~~v~--~---~Gw~~~~~~~~~~~~~l~~~G~~~iiv~~~~~  170 (241)
T PRK14024        107 -AL----------ENPEWCARVIAEHGDRVAVGLDVRGHTLA--A---RGWTRDGGDLWEVLERLDSAGCSRYVVTDVTK  170 (241)
T ss_pred             -Hh----------CCHHHHHHHHHHhhhhEEEEEEEeccEec--c---CCeeecCccHHHHHHHHHhcCCCEEEEEeecC
Confidence             11          1123334444433322   111210 111  0   001112346678888999999998877665  


Q ss_pred             cCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHH-hCCCEEeeccccCCCCCCCCCCCCCccHHHHHHH
Q 015894          271 IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQ-MGISTVDSSVSGLGGCPYAKGASGNVATEDVVYM  349 (398)
Q Consensus       271 ~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~-aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~  349 (398)
                      .|.+.+. -.++++.+++..+ +|+-.-+.    .....-+..+. .-...+|+.+.|-+-      -.|..++++++..
T Consensus       171 ~g~~~G~-d~~~i~~i~~~~~-ipviasGG----i~s~~D~~~l~~~~~~GvdgV~igra~------~~g~~~~~~~~~~  238 (241)
T PRK14024        171 DGTLTGP-NLELLREVCARTD-APVVASGG----VSSLDDLRALAELVPLGVEGAIVGKAL------YAGAFTLPEALAV  238 (241)
T ss_pred             CCCccCC-CHHHHHHHHhhCC-CCEEEeCC----CCCHHHHHHHhhhccCCccEEEEeHHH------HcCCCCHHHHHHH
Confidence            3444443 3566777777653 45665432    22222222221 111224455555555      5677778877554

>PRK06354 pyruvate kinase; Provisional

Probab=84.48  E-value=68  Score=35.13  Aligned_cols=250  Identities=12%  Similarity=0.107  Sum_probs=138.4

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh--ccCCcEEEEeCCHhhH---HHHHHcCCCEE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN--VEGARFPVLTPNLKGF---EAAVAAGAKEV  189 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~--~~~~~l~~l~~n~~~i---e~a~~~Gv~~v  189 (398)
                      .++..++..| +.-.+.|+|+|-+.|--+.      .|..++.+.+.+  -.++.+.+-.-+.+++   +.-++. +|.|
T Consensus       175 ~ltekD~~di-~f~~~~~vD~ia~SFVr~~------~dv~~~r~~l~~~~~~~~~iiaKIEt~eav~nldeI~~~-~DgI  246 (590)
T PRK06354        175 AITEKDREDL-IFGLEQGVDWIALSFVRNP------SDVLEIRELIEEHNGKHIPIIAKIEKQEAIDNIDAILEL-CDGL  246 (590)
T ss_pred             CCCHHHHHHH-HHHHHcCCCEEEEcCCCCH------HHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHh-cCEE
Confidence            3666666654 6777999999988764332      344444455532  2244455555555444   333444 7766


Q ss_pred             EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEE-EEeee--ecCCCCCCCCHHHHHHHHHHHHhCCCCEEE
Q 015894          190 AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRG-YLSCV--VGCPVEGMVPPSKVAYVSKQLYDMGCSEIS  266 (398)
Q Consensus       190 ~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~-~l~~~--fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~  266 (398)
                      .|.  -.|.    ...+..++.....+++++.|+++|..|-+ +=+..  ...|   +.+..++-+++..+. -|+|.+-
T Consensus       247 mVa--RGDL----gve~g~e~v~~~qk~ii~~~~~~gkpvI~ATqmLeSM~~~p---~PTRAEvsDVaNav~-DG~DavM  316 (590)
T PRK06354        247 MVA--RGDL----GVEIPAEEVPLLQKRLIKKANRLGKPVITATQMLDSMQRNP---RPTRAEASDVANAIL-DGTDAVM  316 (590)
T ss_pred             EEc--cchh----hcccCcHHHHHHHHHHHHHHHHcCCCEEEEchhHHHHhhCC---CCCchhhHHHHHHhh-hCCcEEE
Confidence            553  2243    22234566777788999999999998752 11111  1123   344566666665443 7999998


Q ss_pred             Ec-cCcCcCCHHHHHHHHHHHHhhCCC-CeEEEE--e----CCcc--chHHHHHHHHHHhCCC-EEeeccccCCC-----
Q 015894          267 LG-DTIGVGTPGTVIPMLEAVLDAVPV-DKLAVH--F----HDTY--GQALSNILASLQMGIS-TVDSSVSGLGG-----  330 (398)
Q Consensus       267 L~-DT~G~~~P~~v~~lv~~l~~~~p~-~~l~~H--~----Hnd~--GlA~ANalaAl~aGa~-~VD~Sv~GlGe-----  330 (398)
                      |. -|+=.-.|.+..+.++.+.+..-. .....+  .    +++.  .+|.+....|-..+++ +|=.|-.|--.     
T Consensus       317 LS~ETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~ia~aa~~~a~~~~a~~Iv~~T~sG~ta~~vsk  396 (590)
T PRK06354        317 LSNETAAGDYPVEAVQTMATIAVRIEKDLPYRDILSKRPEFTTTITNAISQAVSHIALQLDAAAIVTLTKSGATARNVSK  396 (590)
T ss_pred             ecccccCCCCHHHHHHHHHHHHHHHHhccchhhhhhhccccCCCHHHHHHHHHHHHHhhcCCCEEEEECCChHHHHHHHh
Confidence            87 566677898888888777654311 000001  0    1222  2444455567788887 55666665432     


Q ss_pred             ----CCCCCCCCCCccHHHHHHHHHh-CCCCC-----ccChHHHHHHHHHHHHHhCCCCCCCcccc
Q 015894          331 ----CPYAKGASGNVATEDVVYMLNG-LGVRT-----NVDIRKLMIAGDFICKHLGRTSGSKTAIA  386 (398)
Q Consensus       331 ----cp~a~graGNa~lE~vv~~L~~-~Gi~t-----~iDl~~L~~~~~~v~~~~g~~~~~~~piv  386 (398)
                          ||.    -.-.+-+.+..-|.- .|+.+     ..+.+.+.+.+....+..|.--+....++
T Consensus       397 ~Rp~~pI----~a~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~~~~~~~~~g~~~~gd~vv~  458 (590)
T PRK06354        397 YRPKTPI----LAVTPNESVARRLQLVWGVTPLLVLDAPSTDETFDAAINVAQESGLLKQGDLVVI  458 (590)
T ss_pred             hCCCCCE----EEECCCHHHHHHhhcccCcEEEEeCCCCCHHHHHHHHHHHHHHcCCCCCCCEEEE
Confidence                331    112234666655554 25432     23555666655555555666555554443

>PRK00164 moaA molybdenum cofactor biosynthesis protein A; Reviewed

Probab=84.42  E-value=32  Score=34.14  Aligned_cols=120  Identities=21%  Similarity=0.211  Sum_probs=61.9

Q ss_pred             HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC-CCCEEEEccCcCcCCHHHHHHHHHHHHhhC-CC
Q 015894          215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM-GCSEISLGDTIGVGTPGTVIPMLEAVLDAV-PV  292 (398)
Q Consensus       215 ~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~-Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~-p~  292 (398)
                      +.+.++.+.+.|+.. +.++  -|-|. -+   ..+.++++.+.+. |...|.+ -|.|.+.+.    .+..+++.- ..
T Consensus        54 i~~~i~~~~~~gi~~-I~~t--GGEPl-l~---~~l~~li~~i~~~~~~~~i~i-tTNG~ll~~----~~~~L~~agl~~  121 (331)
T PRK00164         54 IERLVRAFVALGVRK-VRLT--GGEPL-LR---KDLEDIIAALAALPGIRDLAL-TTNGYLLAR----RAAALKDAGLDR  121 (331)
T ss_pred             HHHHHHHHHHCCCCE-EEEE--CCCCc-Cc---cCHHHHHHHHHhcCCCceEEE-EcCchhHHH----HHHHHHHcCCCE
Confidence            344556666777643 2232  23332 22   2355666666665 4556666 688876553    344554432 23


Q ss_pred             CeEEEEeCCc-----------cchHHHHHHHHHHhCCCE--EeeccccCCCCCCCCCCCCC-ccHHHHHHHHHhCCCC
Q 015894          293 DKLAVHFHDT-----------YGQALSNILASLQMGIST--VDSSVSGLGGCPYAKGASGN-VATEDVVYMLNGLGVR  356 (398)
Q Consensus       293 ~~l~~H~Hnd-----------~GlA~ANalaAl~aGa~~--VD~Sv~GlGecp~a~graGN-a~lE~vv~~L~~~Gi~  356 (398)
                      +.|++|..+.           +-..+.+.-.+.++|...  ++..+. -|.         | -.+++++..+++.|++
T Consensus       122 i~ISlds~~~e~~~~i~~~~~~~~vl~~i~~~~~~g~~~v~i~~vv~-~g~---------n~~ei~~l~~~~~~~gv~  189 (331)
T PRK00164        122 VNVSLDSLDPERFKAITGRDRLDQVLAGIDAALAAGLTPVKVNAVLM-KGV---------NDDEIPDLLEWAKDRGIQ  189 (331)
T ss_pred             EEEEeccCCHHHhccCCCCCCHHHHHHHHHHHHHCCCCcEEEEEEEE-CCC---------CHHHHHHHHHHHHhCCCe
Confidence            4566665332           223344445555777732  333332 132         3 3677777777777764

>TIGR01520 FruBisAldo_II_A fructose-bisphosphate aldolase, class II, yeast/E

Probab=84.36  E-value=21  Score=36.51  Aligned_cols=118  Identities=11%  Similarity=0.081  Sum_probs=78.2

Q ss_pred             HHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEccCc-CcCC---------------
Q 015894          213 IRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGDTI-GVGT---------------  275 (398)
Q Consensus       213 ~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~DT~-G~~~---------------  275 (398)
                      +++.++.+.|++.++-|-+ +.+         ++.+.+..+++.+.+..... |.+.... ..+.               
T Consensus        13 ~~~~~lL~~A~~~~yAVgA-fNv---------~n~e~~~Avi~AAEe~~sPvIlq~s~~~~~~~~g~~~~~~~~~~~~~~   82 (357)
T TIGR01520        13 DDVHKLFQYAKENNFAIPA-INC---------TSSSTINAALEAAADVKSPIIIQFSNGGAAFIAGKGVKDEVPQGASIL   82 (357)
T ss_pred             HHHHHHHHHHHHCCceEEE-EEe---------CCHHHHHHHHHHHHHhCCCEEEEcCcchhhhcCCcccccccchhhhhh
Confidence            4567788999999997742 321         46788999999999998775 4443311 1111               


Q ss_pred             -HHHHHHHHHHHHhhCCCCeEEEEeCCccchHH--HHHHHHHHhC-----------CC--EEeeccccCCCCCCCCCCCC
Q 015894          276 -PGTVIPMLEAVLDAVPVDKLAVHFHDTYGQAL--SNILASLQMG-----------IS--TVDSSVSGLGGCPYAKGASG  339 (398)
Q Consensus       276 -P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~--ANalaAl~aG-----------a~--~VD~Sv~GlGecp~a~graG  339 (398)
                       +..+..++..+.++.+ +|+.+|.  |.|.-.  .....|+++|           .+  ++|+|-..+-+         
T Consensus        83 ~~~~~~~~v~~~Ae~a~-VPValHL--DHg~~~~~~~i~~ai~ag~~~~~~~g~~gftSVMiDgS~lpfeE---------  150 (357)
T TIGR01520        83 GAIAGAHHVHSIAEHYG-VPVVLHT--DHCAKKLLPWVDGLLEAGEKYFSAHGKPLFSSHMIDLSEEPIEE---------  150 (357)
T ss_pred             hHHHHHHHHHHHHHHCC-CCEEEEC--CCCCCcchHHHHHHHHhhhhhhhhcCCCCCceEEeeCCCCCHHH---------
Confidence             2336777787777774 4677665  445444  4466677775           65  77999888887         


Q ss_pred             Cc-cHHHHHHHHHh
Q 015894          340 NV-ATEDVVYMLNG  352 (398)
Q Consensus       340 Na-~lE~vv~~L~~  352 (398)
                      |. -|.+++...+.
T Consensus       151 NI~~TrevVe~Ah~  164 (357)
T TIGR01520       151 NIEICVKYLKRMAK  164 (357)
T ss_pred             HHHHHHHHHHHHHH
Confidence            66 56677776663

coli subtype. This model represents one of two deeply split, architecturally distinct clades of the family that includes class II fructose-bisphosphate aldolases, tagatose-bisphosphate aldolases, and related uncharacterized proteins. This family is well-conserved and includes characterized FBA from Saccharomyces cerevisiae, Escherichia coli, and Corynebacterium glutamicum. Proteins outside the scope of this model may also be designated as class II fructose-bisphosphate aldolases, but are well separated in an alignment-based phylogenetic tree.

>PRK05927 hypothetical protein; Provisional

Probab=84.31  E-value=2.9  Score=42.49  Aligned_cols=78  Identities=14%  Similarity=0.166  Sum_probs=58.1

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcCcC---CHHHHHHHHHHHHhhCCCCeE------EE-EeCCccchHHHHHHH
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGVG---TPGTVIPMLEAVLDAVPVDKL------AV-HFHDTYGQALSNILA  312 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~---~P~~v~~lv~~l~~~~p~~~l------~~-H~Hnd~GlA~ANala  312 (398)
                      ...+++.+.+.++++.+.|+.+|.|  +.|.-   ..+.+.++++.+++.+|++.+      ++ |.--..|+.+-..+.
T Consensus        74 y~ls~eei~~~a~~~~~~G~~~i~i--~gG~~p~~~~e~~~~~i~~ik~~~p~l~~~~~s~~ei~~~~~~~G~~~~e~l~  151 (350)
T PRK05927         74 YLLSFDEFRSLMQRYVSAGVKTVLL--QGGVHPQLGIDYLEELVRITVKEFPSLHPHFFSAVEIAHAAQVSGISTEQALE  151 (350)
T ss_pred             cccCHHHHHHHHHHHHHCCCCEEEE--eCCCCCCCCHHHHHHHHHHHHHHCCCCcccCCCHHHHHHHHHhcCCCHHHHHH
Confidence            3568899999999999999999998  44443   235788899999999886311      11 344557999999999


Q ss_pred             HHH-hCCCEEe
Q 015894          313 SLQ-MGISTVD  322 (398)
Q Consensus       313 Al~-aGa~~VD  322 (398)
                      .++ ||++.+.
T Consensus       152 ~Lk~aGl~~l~  162 (350)
T PRK05927        152 RLWDAGQRTIP  162 (350)
T ss_pred             HHHHcCcccCC
Confidence            886 9997544

>PLN02925 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase

Probab=84.29  E-value=53  Score=36.56  Aligned_cols=176  Identities=7%  Similarity=-0.028  Sum_probs=92.8

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc----cCCcEEEEe-CCHhhHHHHHHcCCCEE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV----EGARFPVLT-PNLKGFEAAVAAGAKEV  189 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~----~~~~l~~l~-~n~~~ie~a~~~Gv~~v  189 (398)
                      .-+++..++-+..|.++|.+.+-++.+.       ..+++.+...-+.+    -++.+.+=. -+.+-...|++. ++.|
T Consensus       106 T~D~eatv~Qi~~l~~aGceiVRvtv~~-------~~~A~al~~I~~~L~~~g~~iPLVADIHF~~~~Al~a~~~-vdki  177 (733)
T PLN02925        106 TKDVEATVDQVMRIADKGADIVRITVQG-------KKEADACFEIKNTLVQKGYNIPLVADIHFAPSVALRVAEC-FDKI  177 (733)
T ss_pred             cccHHHHHHHHHHHHHcCCCEEEEcCCC-------HHHHHhHHHHHHHHhhcCCCCCEEEecCCCHHHHHHHHHh-cCCe
Confidence            3566777888999999999999998643       23443332222221    123333322 243333345566 8888


Q ss_pred             EEeccCchHHHhhhc------CCCHHHHHHHH----HHHHHHHHhCCCcEEEEEeeeecCCCC---CC--CCHHH----H
Q 015894          190 AIFASASESFSKSNI------NCTIEDSLIRY----RDVALAARELSIPVRGYLSCVVGCPVE---GM--VPPSK----V  250 (398)
Q Consensus       190 ~i~~~~Sd~~~~~~~------~~s~~~~l~~~----~~~v~~ak~~G~~v~~~l~~~fg~~~~---~r--~~~~~----l  250 (398)
                      ||=-. |=...++.+      .-..++-++++    ..+|+.||++|..++..+.  .|+-..   .+  .+|+-    .
T Consensus       178 RINPG-N~~~~~k~F~~~eYtdeeY~~Ele~i~e~f~~~v~~ak~~~~~iRIGvN--~GSLs~ri~~~yGdtp~gmVeSA  254 (733)
T PLN02925        178 RVNPG-NFADRRAQFEKLEYTEDDYQKELEHIEEVFTPLVEKCKKYGRAMRIGTN--HGSLSDRIMSYYGDSPRGMVESA  254 (733)
T ss_pred             EECCc-ccCCccccccccccchhhhhhhHHHHHHHHHHHHHHHHHCCCCEEEecC--CcCchHHHHHHhCCChHHHHHHH
Confidence            87211 100000000      00123344444    4599999999999996554  232110   01  13433    3


Q ss_pred             HHHHHHHHhCCCCE--EEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCC
Q 015894          251 AYVSKQLYDMGCSE--ISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHD  301 (398)
Q Consensus       251 ~~~a~~l~~~Gad~--I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hn  301 (398)
                      .+.++.+.++|-+.  |+++.|.=...=...+.++..+.+.--+-||+++.--
T Consensus       255 le~~~i~e~~~f~diviS~KsSn~~~~V~AyR~La~~L~~~g~~yPLhLgvTE  307 (733)
T PLN02925        255 FEFARICRKLDYHNFVFSMKASNPVVMVQAYRLLVAEMYVLGWDYPLHLGVTE  307 (733)
T ss_pred             HHHHHHHHHCCCCcEEEEEEcCChHHHHHHHHHHHHHHHhcCCCCceEEEEec
Confidence            34667777888874  6677764444444555555665544222345444433

>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]

Probab=84.12  E-value=38  Score=34.74  Aligned_cols=142  Identities=21%  Similarity=0.122  Sum_probs=84.6

Q ss_pred             HHHHHcCCCEEEEecc--------CchH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-CCc--EEEEEeeeecCCCCCCC
Q 015894          179 EAAVAAGAKEVAIFAS--------ASES--FSKSNINCTIEDSLIRYRDVALAAREL-SIP--VRGYLSCVVGCPVEGMV  245 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~--------~Sd~--~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~~--v~~~l~~~fg~~~~~r~  245 (398)
                      ++|+++|.|.|-|...        +|+.  +++..+|-|.|+=+....++++.+|+. |..  |..-++..- .....-.
T Consensus       156 ~rA~~AGFDgVEIH~AhGYLi~qFlsp~tN~RtD~YGGSlENR~Rf~~EVv~aVr~~vg~~~~vg~Rls~~d-~~~~~g~  234 (363)
T COG1902         156 RRAKEAGFDGVEIHGAHGYLLSQFLSPLTNKRTDEYGGSLENRARFLLEVVDAVREAVGADFPVGVRLSPDD-FFDGGGL  234 (363)
T ss_pred             HHHHHcCCCEEEEeeccchHHHHhcCCccCCCCCccCCcHHHHHHHHHHHHHHHHHHhCCCceEEEEECccc-cCCCCCC
Confidence            5778899998887532        1111  233445667787788888888888765 443  555555321 1122235


Q ss_pred             CHHHHHHHHHHHHhCC-CCEEEEccCcC----cCC---HHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhC
Q 015894          246 PPSKVAYVSKQLYDMG-CSEISLGDTIG----VGT---PGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMG  317 (398)
Q Consensus       246 ~~~~l~~~a~~l~~~G-ad~I~L~DT~G----~~~---P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aG  317 (398)
                      +++...++++.+.+.| ++.|.+.--.-    ...   |.....+...++......-+.+-.    ......+..+++.|
T Consensus       235 ~~~e~~~la~~L~~~G~~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~pvi~~G~----i~~~~~Ae~~l~~g  310 (363)
T COG1902         235 TIEEAVELAKALEEAGLVDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAVRIPVIAVGG----INDPEQAEEILASG  310 (363)
T ss_pred             CHHHHHHHHHHHHhcCCccEEEeecccccCCCCccccccchhHHHHHHHHHhcCCCEEEeCC----CCCHHHHHHHHHcC
Confidence            7889999999999999 68766543211    111   333445556666554311122222    44456677888888


Q ss_pred             -CCEEeeccccCCC
Q 015894          318 -ISTVDSSVSGLGG  330 (398)
Q Consensus       318 -a~~VD~Sv~GlGe  330 (398)
                       ||.|     |||.
T Consensus       311 ~aDlV-----a~gR  319 (363)
T COG1902         311 RADLV-----AMGR  319 (363)
T ss_pred             CCCEE-----Eech
Confidence             6644     6665

>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function

Probab=84.10  E-value=5.7  Score=33.67  Aligned_cols=78  Identities=13%  Similarity=0.021  Sum_probs=43.3

Q ss_pred             HHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEE
Q 015894          219 ALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVH  298 (398)
Q Consensus       219 v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H  298 (398)
                      ++.+++.|++..+++-     |+.-..+.-....+.+.+.++|...+.++=+.|..++..+..+.+.+.+ .|. |+-+|
T Consensus        20 ~~~la~~GfktVInlR-----pd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~~~~~~v~~f~~~l~~-~~~-Pvl~h   92 (110)
T PF04273_consen   20 LAQLAAQGFKTVINLR-----PDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGAITEEDVEAFADALES-LPK-PVLAH   92 (110)
T ss_dssp             HHHHHHCT--EEEE-S------TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT--HHHHHHHHHHHHT-TTT-SEEEE
T ss_pred             HHHHHHCCCcEEEECC-----CCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCCCCHHHHHHHHHHHHh-CCC-CEEEE
Confidence            3456789998765443     3422111123344566788999999999999999999999998877765 565 67777


Q ss_pred             eCCcc
Q 015894          299 FHDTY  303 (398)
Q Consensus       299 ~Hnd~  303 (398)
                      |....
T Consensus        93 C~sG~   97 (110)
T PF04273_consen   93 CRSGT   97 (110)
T ss_dssp             -SCSH
T ss_pred             CCCCh
Confidence            66543

; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.

>PRK00230 orotidine 5'-phosphate decarboxylase; Reviewed

Probab=84.07  E-value=39  Score=32.08  Aligned_cols=163  Identities=12%  Similarity=0.093  Sum_probs=81.8

Q ss_pred             HHHHHHHhcC--CCEEEEec--CCCCCcccCCCCHHHHHHHHHhccCCcEEE------EeCCH-hhHHHHHHcCCCEEEE
Q 015894          123 ELIKLLVSSG--LAVVEATS--FVSPKWVPQLADAKDVMAAIQNVEGARFPV------LTPNL-KGFEAAVAAGAKEVAI  191 (398)
Q Consensus       123 ~ia~~L~~aG--v~~IEvG~--~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~------l~~n~-~~ie~a~~~Gv~~v~i  191 (398)
                      +.++.+.++|  +..+++|.  |++  +     - .+.++.+++. +..+..      +..+. ..++.+.++|++.+.+
T Consensus        16 ~~l~~~~~~~~~~~~ikvg~~~f~~--~-----G-~~~i~~l~~~-~~~i~~D~Kl~Di~~t~~~~i~~~~~~gad~itv   86 (230)
T PRK00230         16 EALAFLDQLDPAVLFVKVGMELFTA--G-----G-PQFVRELKQR-GFKVFLDLKLHDIPNTVAKAVRALAKLGVDMVNV   86 (230)
T ss_pred             HHHHHHHhcCCcccEEEEcHHHHHh--c-----C-HHHHHHHHhc-CCCEEEEeehhhccccHHHHHHHHHHcCCCEEEE
Confidence            3444555555  67899985  332  1     1 1344455533 222211      22233 3467788999999888


Q ss_pred             eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCC----CCCC-HHHHHHHHHHHHhCCCCE
Q 015894          192 FASASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVE----GMVP-PSKVAYVSKQLYDMGCSE  264 (398)
Q Consensus       192 ~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~----~r~~-~~~l~~~a~~l~~~Gad~  264 (398)
                      .....+               +.++.+++.+++.  +..+.+.+....+..+.    ...+ .+.+..+++.+.+.|++.
T Consensus        87 H~~ag~---------------~~i~~~~~~~~~~~~~~~~~V~~lts~~~~~l~~~~~~~~~~~~v~~~a~~a~~~g~dg  151 (230)
T PRK00230         87 HASGGP---------------RMMKAAREALEPKSRPLLIAVTVLTSMDEEDLAELGINLSLEEQVLRLAKLAQEAGLDG  151 (230)
T ss_pred             cccCCH---------------HHHHHHHHHhhccCCCeEEEEEECCCCCHHHHHhCcCCCCHHHHHHHHHHHHHHcCCeE
Confidence            654332               3344445555543  34454444432211000    0111 245556777788889987


Q ss_pred             EEEccCcCcCCHHHHHHHHHHHHhhC--------CCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894          265 ISLGDTIGVGTPGTVIPMLEAVLDAV--------PVDKLAVHFHDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       265 I~L~DT~G~~~P~~v~~lv~~l~~~~--------p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                      +...       |.+    +..+|+.+        |+++.. -...+..--+...-.|+++|++.|
T Consensus       152 vv~~-------~~~----~~~ir~~~~~~~~~v~pGI~~~-g~~~~dq~~~~~~~~ai~~Gad~i  204 (230)
T PRK00230        152 VVCS-------AQE----AAAIREATGPDFLLVTPGIRPA-GSDAGDQKRVMTPAQAIAAGSDYI  204 (230)
T ss_pred             EEeC-------hHH----HHHHHhhcCCceEEEcCCcCCC-CCCcchHHHHhCHHHHHHcCCCEE
Confidence            6443       222    23333332        443310 111133334557788889999977

>PRK00115 hemE uroporphyrinogen decarboxylase; Validated

Probab=84.04  E-value=5.9  Score=39.88  Aligned_cols=72  Identities=11%  Similarity=0.082  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHhCCCCEEEEcc-CcCcCCHHH--------HHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCC
Q 015894          248 SKVAYVSKQLYDMGCSEISLGD-TIGVGTPGT--------VIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGI  318 (398)
Q Consensus       248 ~~l~~~a~~l~~~Gad~I~L~D-T~G~~~P~~--------v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa  318 (398)
                      +.+.++++...++|++.|.+.| +.+.++|..        ..+++..+++..|+.++-.|+.++..+    .-.-.+.|+
T Consensus       186 ~~~~~~~~~~~eaGad~i~i~d~~~~~lsp~~f~ef~~P~~k~i~~~i~~~~~~~~ilh~cg~~~~~----~~~~~~~~~  261 (346)
T PRK00115        186 DATIAYLNAQIEAGAQAVQIFDSWAGALSPADYREFVLPYMKRIVAELKREHPDVPVILFGKGAGEL----LEAMAETGA  261 (346)
T ss_pred             HHHHHHHHHHHHcCCCEEEEecCccccCCHHHHHHHHHHHHHHHHHHHHHhCCCCCEEEEcCCcHHH----HHHHHhcCC


Q ss_pred             CEEee
Q 015894          319 STVDS  323 (398)
Q Consensus       319 ~~VD~  323 (398)
                      +.+..
T Consensus       262 ~~is~  266 (346)
T PRK00115        262 DVVGL  266 (346)
T ss_pred             CEEee

>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases

Probab=83.87  E-value=39  Score=31.84  Aligned_cols=150  Identities=14%  Similarity=0.205  Sum_probs=88.6

Q ss_pred             CHhhHHHHHHcCC-CEEEEeccCchHHHhhhcCC-CHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHH
Q 015894          174 NLKGFEAAVAAGA-KEVAIFASASESFSKSNINC-TIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVA  251 (398)
Q Consensus       174 n~~~ie~a~~~Gv-~~v~i~~~~Sd~~~~~~~~~-s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~  251 (398)
                      +.+.++.+.+.|. +.    +.+||....+. +. +.++.+..+.+.+      ...|.+.+   ++      .+.+...
T Consensus         8 ~~~ei~~~~~~~~i~G----vTTNPsll~k~-~~~~~~~~~~~i~~~~------~~~v~~qv---~~------~~~e~~i   67 (211)
T cd00956           8 DLEEIKKASETGLLDG----VTTNPSLIAKS-GRIDFEAVLKEICEII------DGPVSAQV---VS------TDAEGMV   67 (211)
T ss_pred             CHHHHHHHHhcCCcCc----cccCHHHHHhc-CCcCHHHHHHHHHHhc------CCCEEEEE---Ee------CCHHHHH
Confidence            4566777777663 32    34577666542 44 5555555444433      12333222   11      4678888


Q ss_pred             HHHHHHHhC-CCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCC
Q 015894          252 YVSKQLYDM-GCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGG  330 (398)
Q Consensus       252 ~~a~~l~~~-Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGe  330 (398)
                      +.++.+.+. |--.|-|+=|.      .-.+.++.|++.      +++++-+.=+....+++|.++||++|---++=+-.
T Consensus        68 ~~a~~l~~~~~~~~iKIP~T~------~gl~ai~~L~~~------gi~v~~T~V~s~~Qa~~Aa~AGA~yvsP~vgR~~~  135 (211)
T cd00956          68 AEARKLASLGGNVVVKIPVTE------DGLKAIKKLSEE------GIKTNVTAIFSAAQALLAAKAGATYVSPFVGRIDD  135 (211)
T ss_pred             HHHHHHHHhCCCEEEEEcCcH------hHHHHHHHHHHc------CCceeeEEecCHHHHHHHHHcCCCEEEEecChHhh
Confidence            889988887 43345566543      333445555543      33444455567788999999999998777766543


Q ss_pred             CCCCCCCCCCccHHHHHHHHHhCCCCCcc
Q 015894          331 CPYAKGASGNVATEDVVYMLNGLGVRTNV  359 (398)
Q Consensus       331 cp~a~graGNa~lE~vv~~L~~~Gi~t~i  359 (398)
                          .|..|..-++++...++.+|+++.+
T Consensus       136 ----~g~dg~~~i~~i~~~~~~~~~~tki  160 (211)
T cd00956         136 ----LGGDGMELIREIRTIFDNYGFDTKI  160 (211)
T ss_pred             ----cCCCHHHHHHHHHHHHHHcCCCceE
Confidence                1235555556777777777776544

FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.

>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP)

Probab=83.81  E-value=23  Score=32.66  Aligned_cols=156  Identities=15%  Similarity=0.141  Sum_probs=80.8

Q ss_pred             CCHhhHHHHHHcCCCEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHH
Q 015894          173 PNLKGFEAAVAAGAKEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVA  251 (398)
Q Consensus       173 ~n~~~ie~a~~~Gv~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~  251 (398)
                      ++.++++.+.+.|++.|.+-. ..|+.+.      +    ++.++++.+.++..-..|-+.+.          -+++.+.
T Consensus         7 ~~~ed~~~a~~~Gvd~ig~i~~~~s~R~v------~----~~~a~~l~~~~~~~~~~V~v~vn----------~~~~~i~   66 (203)
T cd00405           7 TTLEDALAAAEAGADAIGFIFAPKSPRYV------S----PEQAREIVAALPPFVKRVGVFVN----------EDLEEIL   66 (203)
T ss_pred             CCHHHHHHHHHcCCCEEEEecCCCCCCCC------C----HHHHHHHHHhCCCCCcEEEEEeC----------CCHHHHH
Confidence            467789999999999998854 3333221      1    34445555555442122321111          1345544


Q ss_pred             HHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCC-CCe--EEEEeCCccchHHHHHHHHHHhCCCEE--eeccc
Q 015894          252 YVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVP-VDK--LAVHFHDTYGQALSNILASLQMGISTV--DSSVS  326 (398)
Q Consensus       252 ~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p-~~~--l~~H~Hnd~GlA~ANalaAl~aGa~~V--D~Sv~  326 (398)
                      ++   +.+.|+|.|-|-..-   .|.    .++.+++.++ ..-  ++++.|++..     ...+...|++++  |+..-
T Consensus        67 ~i---a~~~~~d~Vqlhg~e---~~~----~~~~l~~~~~~~~i~~i~~~~~~~~~-----~~~~~~~~aD~il~dt~~~  131 (203)
T cd00405          67 EI---AEELGLDVVQLHGDE---SPE----YCAQLRARLGLPVIKAIRVKDEEDLE-----KAAAYAGEVDAILLDSKSG  131 (203)
T ss_pred             HH---HHhcCCCEEEECCCC---CHH----HHHHHHhhcCCcEEEEEecCChhhHH-----HhhhccccCCEEEEcCCCC
Confidence            44   557899999997542   333    4555565543 223  4444444422     245566788855  66544


Q ss_pred             cCCCCCCCCCCCCCccHHHHHHHHH-hC--CCCCccChHHHHHHHH
Q 015894          327 GLGGCPYAKGASGNVATEDVVYMLN-GL--GVRTNVDIRKLMIAGD  369 (398)
Q Consensus       327 GlGecp~a~graGNa~lE~vv~~L~-~~--Gi~t~iDl~~L~~~~~  369 (398)
                      +.++      ++|.+---+++..+. ..  -+--|++.+.+.++.+
T Consensus       132 ~~~G------g~g~~~~~~~l~~~~~~~PvilaGGI~~~Nv~~~i~  171 (203)
T cd00405         132 GGGG------GTGKTFDWSLLRGLASRKPVILAGGLTPDNVAEAIR  171 (203)
T ss_pred             CCCC------CCcceEChHHhhccccCCCEEEECCCChHHHHHHHH
Confidence            4333      455543333333332 11  1112567766666554

Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.

>PLN02424 ketopantoate hydroxymethyltransferase

Probab=83.80  E-value=41  Score=34.11  Aligned_cols=149  Identities=20%  Similarity=0.237  Sum_probs=84.7

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCC------CCCcccCCCCHHHHHHHHHhcc-CCcEEEEe---C------CHhh--
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFV------SPKWVPQLADAKDVMAAIQNVE-GARFPVLT---P------NLKG--  177 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~------~~~~~p~~~D~~~v~~~i~~~~-~~~l~~l~---~------n~~~--  177 (398)
                      +.+.--..-++.++++|+|.|-+|...      .++-.|  -+.++++.-++.+. ++....++   +      +.++  
T Consensus        39 mlTAyD~~sA~i~d~aGvD~ILVGDSlgmv~lG~~~T~~--Vtld~mi~H~~aV~Rga~~a~vVaDmPfgSY~~s~e~av  116 (332)
T PLN02424         39 MVTAYDYPSAVHVDSAGIDVCLVGDSAAMVVHGHDTTLP--ITLDEMLVHCRAVARGANRPLLVGDLPFGSYESSTDQAV  116 (332)
T ss_pred             EEecCCHHHHHHHHHcCCCEEEECCcHHHHhcCCCCCCC--cCHHHHHHHHHHHhccCCCCEEEeCCCCCCCCCCHHHHH
Confidence            333334567889999999999998421      122222  24556665554332 22222211   2      2222  


Q ss_pred             --HHHH-HHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeee------ecC-CCCCCCC-
Q 015894          178 --FEAA-VAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCV------VGC-PVEGMVP-  246 (398)
Q Consensus       178 --ie~a-~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~------fg~-~~~~r~~-  246 (398)
                        ..+. .+.|++-|.+-...                 ....+.|+...+.|+.|.++|-..      +|. -.-++.. 
T Consensus       117 ~nA~rl~~eaGa~aVKlEGg~-----------------~~~~~~I~~l~~~GIPV~gHiGLtPQs~~~lGGykvqGr~~~  179 (332)
T PLN02424        117 ESAVRMLKEGGMDAVKLEGGS-----------------PSRVTAAKAIVEAGIAVMGHVGLTPQAISVLGGFRPQGRTAE  179 (332)
T ss_pred             HHHHHHHHHhCCcEEEECCCc-----------------HHHHHHHHHHHHcCCCEEEeecccceeehhhcCccccCCCHH
Confidence              2233 56899999996441                 112355666678999998666532      111 1122321 


Q ss_pred             -HHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCC
Q 015894          247 -PSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVP  291 (398)
Q Consensus       247 -~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p  291 (398)
                       ...+.+-++.+.++||..|.|.=     .|..+..   .+-+.++
T Consensus       180 ~a~~li~dA~ale~AGAf~ivLE~-----Vp~~la~---~It~~l~  217 (332)
T PLN02424        180 SAVKVVETALALQEAGCFAVVLEC-----VPAPVAA---AITSALQ  217 (332)
T ss_pred             HHHHHHHHHHHHHHcCCcEEEEcC-----CcHHHHH---HHHHhCC
Confidence             23666778888999999999864     6766444   4444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	398
2cw6_A	298	Crystal Structure Of Human Hmg-Coa Lyase: Insights		1e-99
3mp4_A	298	Crystal Structure Of Human Lyase R41m Mutant Length		7e-99
2ftp_A	302	Crystal Structure Of Hydroxymethylglutaryl-Coa Lyas		3e-86
1ydn_A	295	Crystal Structure Of The Hmg-Coa Lyase From Brucell		1e-71
1ydo_A	307	Crystal Structure Of The Bacillis Subtilis Hmg-Coa		7e-63
2nx9_A	464	Crystal Structure Of The Carboxyltransferase Domain		6e-09
1u5j_A	539	Propionibacterium Shermanii Transcarboxylase 5s Sub		7e-07
1rqe_A	539	Propionibacterium Shermanii Transcarboxylase 5s Sub		7e-07
1s3h_A	539	Propionibacterium Shermanii Transcarboxylase 5s Sub		7e-07
3ivs_A	423	Homocitrate Synthase Lys4 Length = 423		5e-06
3ivt_A	423	Homocitrate Synthase Lys4 Bound To 2-Og Length = 42		5e-06
1rr2_A	473	Propionibacterium Shermanii Transcarboxylase 5s Sub		2e-05
1rqh_A	472	Propionibacterium Shermanii Transcarboxylase 5s Sub		2e-05
3eeg_A	325	Crystal Structure Of A 2-Isopropylmalate Synthase F		3e-05
1rqb_A	539	Propionibacterium Shermanii Transcarboxylase 5s Sub		1e-04
3rmj_A	370	Crystal Structure Of Truncated Alpha-Isopropylmalat		4e-04
3ewb_X	293	Crystal Structure Of N-Terminal Domain Of Putative		4e-04
2ztj_A	382	Crystal Structure Of Homocitrate Synthase From Ther		7e-04
3a9i_A	376	Crystal Structure Of Homocitrate Synthase From Ther		7e-04
3ble_A	337	Crystal Structure Of The Catalytic Domain Of Licms		8e-04

>pdb|2CW6|A Chain A, Crystal Structure Of Human Hmg-Coa Lyase: Insights Into Catalysis And The Molecular Basis For Hydroxymethylglutaric Aciduria Length = 298

Iteration: 1
 Score =  359 bits (922), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 173/296 (58%), Positives = 216/296 (72%)
Query: 94  VPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADA 153
           +P  VKIVEVGPRDGLQNEKNIV   VK++LI +L  +GL+V+E TSFVSPKWVPQ+ D 
Sbjct: 2   LPKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDH 61
Query: 154 KDVMAAIQNVEGARFPVLTPNLXXXXXXXXXXXXXXXXXXSASESFSKSNINCTIEDSLI 213
            +V+  IQ   G  +PVLTPNL                  +ASE F+K NINC+IE+S  
Sbjct: 62  TEVLKGIQKFPGINYPVLTPNLKGFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQ 121
Query: 214 RYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGV 273
           R+  +  AA+  +I VRGY+SC +GCP EG + P+KVA V+K+ Y MGC EISLGDTIGV
Sbjct: 122 RFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYEISLGDTIGV 181
Query: 274 GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPY 333
           GTPG +  ML AV+  VP+  LAVH HDTYGQAL+N L +LQMG+S VDSSV+GLGGCPY
Sbjct: 182 GTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQMGVSVVDSSVAGLGGCPY 241
Query: 334 AKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSK 389
           A+GASGN+ATED+VYML GLG+ T V+++KL+ AG+FIC+ L R + SK A A  K
Sbjct: 242 AQGASGNLATEDLVYMLEGLGIHTGVNLQKLLEAGNFICQALNRKTSSKVAQATCK 297

>pdb|3MP4|A Chain A, Crystal Structure Of Human Lyase R41m Mutant Length = 298

Iteration: 1
 Score =  357 bits (915), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 172/296 (58%), Positives = 215/296 (72%)
Query: 94  VPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADA 153
           +P  VKIVEVGP DGLQNEKNIV   VK++LI +L  +GL+V+E TSFVSPKWVPQ+ D 
Sbjct: 2   LPKRVKIVEVGPMDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDH 61
Query: 154 KDVMAAIQNVEGARFPVLTPNLXXXXXXXXXXXXXXXXXXSASESFSKSNINCTIEDSLI 213
            +V+  IQ   G  +PVLTPNL                  +ASE F+K NINC+IE+S  
Sbjct: 62  TEVLKGIQKFPGINYPVLTPNLKGFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQ 121
Query: 214 RYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGV 273
           R+  +  AA+  +I VRGY+SC +GCP EG + P+KVA V+K+ Y MGC EISLGDTIGV
Sbjct: 122 RFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYEISLGDTIGV 181
Query: 274 GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPY 333
           GTPG +  ML AV+  VP+  LAVH HDTYGQAL+N L +LQMG+S VDSSV+GLGGCPY
Sbjct: 182 GTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQMGVSVVDSSVAGLGGCPY 241
Query: 334 AKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSK 389
           A+GASGN+ATED+VYML GLG+ T V+++KL+ AG+FIC+ L R + SK A A  K
Sbjct: 242 AQGASGNLATEDLVYMLEGLGIHTGVNLQKLLEAGNFICQALNRKTSSKVAQATCK 297

>pdb|2FTP|A Chain A, Crystal Structure Of Hydroxymethylglutaryl-Coa Lyase From Pseudomonas Aeruginosa Length = 302

Iteration: 1
 Score =  315 bits (807), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 153/289 (52%), Positives = 202/289 (69%)
Query: 94  VPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADA 153
           +P  V++VEVGPRDGLQNEK  +    K+ L+  L ++GL  +E  SFVSPKWVPQ+A +
Sbjct: 5   LPKKVRLVEVGPRDGLQNEKQPIEVADKIRLVDDLSAAGLDYIEVGSFVSPKWVPQMAGS 64
Query: 154 KDVMAAIQNVEGARFPVLTPNLXXXXXXXXXXXXXXXXXXSASESFSKSNINCTIEDSLI 213
            +V A I+   G  +  L PNL                  +ASE+FS+ NINC+I+DSL 
Sbjct: 65  AEVFAGIRQRPGVTYAALAPNLKGFEAALESGVKEVAVFAAASEAFSQRNINCSIKDSLE 124
Query: 214 RYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGV 273
           R+  V  AAR+  + VRGY+SCV+GCP +G V P +VA+V+++L  MGC E+SLGDTIGV
Sbjct: 125 RFVPVLEAARQHQVRVRGYISCVLGCPYDGDVDPRQVAWVARELQQMGCYEVSLGDTIGV 184
Query: 274 GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPY 333
           GT G    ++EAV   VP ++LA HFHDTYGQAL+NI ASL  GI+  DSSV+GLGGCPY
Sbjct: 185 GTAGATRRLIEAVASEVPRERLAGHFHDTYGQALANIYASLLEGIAVFDSSVAGLGGCPY 244
Query: 334 AKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSK 382
           AKGA+GNVA+EDV+Y+LNGL + T VD+  L+ AG  IC  LG+++GS+
Sbjct: 245 AKGATGNVASEDVLYLLNGLEIHTGVDMHALVDAGQRICAVLGKSNGSR 293

>pdb|1YDN|A Chain A, Crystal Structure Of The Hmg-Coa Lyase From Brucella Melitensis, Northeast Structural Genomics Target Lr35. Length = 295

Iteration: 1
 Score =  267 bits (682), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 140/273 (51%), Positives = 172/273 (63%)
Query: 98  VKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVM 157
           V+IVE   RDGLQNEK  VP   K+ LI  L   G A +EATSFVSPKWVPQLAD+++V 
Sbjct: 5   VEIVEXAARDGLQNEKRFVPTADKIALINRLSDCGYARIEATSFVSPKWVPQLADSREVX 64
Query: 158 AAIQNVEGARFPVLTPNLXXXXXXXXXXXXXXXXXXSASESFSKSNINCTIEDSLIRYRD 217
           A I+  +G R+ VL PN                   SASE FSK+NINCTI +S+ R   
Sbjct: 65  AGIRRADGVRYSVLVPNXKGYEAAAAAHADEIAVFISASEGFSKANINCTIAESIERLSP 124
Query: 218 VALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPG 277
           V  AA    + +RGY+SCVV CP +G V P  VA V++QL+ +GC E+SLGDTIG GTP 
Sbjct: 125 VIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEVSLGDTIGRGTPD 184
Query: 278 TVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGA 337
           TV   L+AVL   P   LA H+HDT G+AL NI  SL+ G+   D+SV GLGGCP+A GA
Sbjct: 185 TVAAXLDAVLAIAPAHSLAGHYHDTGGRALDNIRVSLEKGLRVFDASVGGLGGCPFAPGA 244
Query: 338 SGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDF 370
            GNV T  VV  L+  G  T +D+ +L  AG F
Sbjct: 245 KGNVDTVAVVEXLHEXGFETGLDLDRLRSAGLF 277

>pdb|1YDO|A Chain A, Crystal Structure Of The Bacillis Subtilis Hmg-Coa Lyase, Northeast Structural Genomics Target Sr181. Length = 307

Iteration: 1
 Score =  237 bits (605), Expect = 7e-63,   Method: Compositional matrix adjust.
 Identities = 124/283 (43%), Positives = 167/283 (59%)
Query: 95  PGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAK 154
           P  V I EVGPRDGLQNE   +    K+  I  L  +GL+ +E TSFV PKW+P L DA 
Sbjct: 4   PKKVTIKEVGPRDGLQNEPVWIATEDKITWINQLSRTGLSYIEITSFVHPKWIPALRDAI 63
Query: 155 DVMAAIQNVEGARFPVLTPNLXXXXXXXXXXXXXXXXXXSASESFSKSNINCTIEDSLIR 214
           DV   I   +G  +  L PN                   SASE+ ++ NIN +  +SL  
Sbjct: 64  DVAKGIDREKGVTYAALVPNQRGLENALEGGINEACVFXSASETHNRKNINKSTSESLHI 123
Query: 215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVG 274
            + V   A++ ++  R YLS V GCP E  VP  +V  +S+ L++ G SE+SLGDTIG  
Sbjct: 124 LKQVNNDAQKANLTTRAYLSTVFGCPYEKDVPIEQVIRLSEALFEFGISELSLGDTIGAA 183
Query: 275 TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYA 334
            P  V  +LEA+L   P +++A+HFHDT G AL+N + +LQ GI+  D S  GLGGCPYA
Sbjct: 184 NPAQVETVLEALLARFPANQIALHFHDTRGTALANXVTALQXGITVFDGSAGGLGGCPYA 243
Query: 335 KGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGR 377
            G+SGN ATED+VY L    ++TNV + KL+ A  +I +  G+
Sbjct: 244 PGSSGNAATEDIVYXLEQXDIKTNVKLEKLLSAAKWIEEKXGK 286

>pdb|2NX9|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of The Oxaloacetate Decarboxylase Na+ Pump From Vibrio Cholerae Length = 464

Iteration: 1
 Score = 58.5 bits (140), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/151 (31%), Positives = 74/151 (49%), Gaps = 12/151 (7%)
Query: 221 AARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVI 280
           A +++    +G L C    PV  +     VA   +QL ++G   I+L D  G+ TP    
Sbjct: 135 AVKKMGAHAQGTL-CYTTSPVHNLQTWVDVA---QQLAELGVDSIALKDMAGILTPYAAE 190
Query: 281 PMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGN 340
            ++  +   V V+ L +H H T G A   +L +++ G+  VD+++S + G        G+
Sbjct: 191 ELVSTLKKQVDVE-LHLHCHSTAGLADMTLLKAIEAGVDRVDTAISSMSGT------YGH 243
Query: 341 VATEDVVYMLNGLGVRTNVDIRKL-MIAGDF 370
            ATE +V  L G G  T +DI KL  IA  F
Sbjct: 244 PATESLVATLQGTGYDTGLDIAKLEQIAAYF 274

>pdb|1U5J|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit, Met186ile Length = 539

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 7/110 (6%)
Query: 256 QLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAV-PVDKLAVHFHDTYGQALSNILASL 314
           QL DMG   I+L D   +  P     +++A+ D      ++ +H H T G    +++ ++
Sbjct: 183 QLLDMGADSIALXDIAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAI 242
Query: 315 QMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKL 364
           + G+  VD+++S +   P      G+  TE V  ML G G  TN+D  +L
Sbjct: 243 EAGVDVVDTAISSMSLGP------GHNPTESVAEMLEGTGYTTNLDYDRL 286

>pdb|1RQE|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit Bound To Oxaloacetate Length = 539

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 7/110 (6%)
Query: 256 QLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAV-PVDKLAVHFHDTYGQALSNILASL 314
           QL DMG   I+L D   +  P     +++A+ D      ++ +H H T G    +++ ++
Sbjct: 183 QLLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAI 242
Query: 315 QMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKL 364
           + G+  VD+++S +   P      G+  TE V  ML G G  TN+D  +L
Sbjct: 243 EAGVDVVDTAISSMSLGP------GHNPTESVAEMLEGTGYTTNLDYDRL 286

>pdb|1S3H|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit A59t Length = 539

Iteration: 1
 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 55/110 (50%), Gaps = 7/110 (6%)
Query: 256 QLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAV-PVDKLAVHFHDTYGQALSNILASL 314
           QL DMG   I+L D   +  P     +++A+ D      ++ +H H T G    +++ ++
Sbjct: 183 QLLDMGADSIALXDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAI 242
Query: 315 QMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKL 364
           + G+  VD+++S +   P      G+  TE V  ML G G  TN+D  +L
Sbjct: 243 EAGVDVVDTAISSMSLGP------GHNPTESVAEMLEGTGYTTNLDYDRL 286

>pdb|3IVS|A Chain A, Homocitrate Synthase Lys4 Length = 423

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 260 MGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGIS 319
           +G + + + DT+G  TP  V  ++  +   V  D +  HFH+  G A++N   +L+ G +
Sbjct: 192 IGVNRVGIADTVGCATPRQVYDLIRTLRGVVSCD-IECHFHNDTGXAIANAYCALEAGAT 250
Query: 320 TVDSSVSGLG 329
            +D+S+ G+G
Sbjct: 251 HIDTSILGIG 260

>pdb|3IVT|A Chain A, Homocitrate Synthase Lys4 Bound To 2-Og Length = 423

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 260 MGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGIS 319
           +G + + + DT+G  TP  V  ++  +   V  D +  HFH+  G A++N   +L+ G +
Sbjct: 192 IGVNRVGIADTVGCATPRQVYDLIRTLRGVVSCD-IECHFHNDTGMAIANAYCALEAGAT 250
Query: 320 TVDSSVSGLG 329
            +D+S+ G+G
Sbjct: 251 HIDTSILGIG 260

>pdb|3EEG|A Chain A, Crystal Structure Of A 2-Isopropylmalate Synthase From Cytophaga Hutchinsonii Length = 325

Iteration: 1
 Score = 46.6 bits (109), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 13/134 (9%)
Query: 239 CPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVP-VDK--L 295
           C   G    + +A   + + + G   +++ DT G   P      ++ + D V  +DK  L
Sbjct: 142 CEDAGRADQAFLARXVEAVIEAGADVVNIPDTTGYXLPWQYGERIKYLXDNVSNIDKAIL 201
Query: 296 AVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYML----N 351
           + H H+  G A +N LA+LQ G   V+ +++G+G        +GN A E+VV        
Sbjct: 202 SAHCHNDLGLATANSLAALQNGARQVECTINGIG------ERAGNTALEEVVXAXECHKE 255
Query: 352 GLGVRTNVDIRKLM 365
            LG+ T ++ +KL+
Sbjct: 256 TLGLETGINHKKLV 269

>pdb|1RQB|A Chain A, Propionibacterium Shermanii Transcarboxylase 5s Subunit Length = 539

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 31/117 (26%), Positives = 52/117 (44%), Gaps = 7/117 (5%)
Query: 256 QLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAV-PVDKLAVHFHDTYGQALSNILASL 314
           QL D G   I+L D   +  P     +++A+ D      ++ +H H T G    ++  ++
Sbjct: 183 QLLDXGADSIALXDXAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLXKAI 242
Query: 315 QMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFI 371
           + G+  VD+++S     P      G+  TE V   L G G  TN+D  +L    D  
Sbjct: 243 EAGVDVVDTAISSXSLGP------GHNPTESVAEXLEGTGYTTNLDYDRLHKIRDHF 293

>pdb|3RMJ|A Chain A, Crystal Structure Of Truncated Alpha-Isopropylmalate Synthase From Neisseria Meningitidis Length = 370

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/123 (25%), Positives = 59/123 (47%), Gaps = 13/123 (10%)
Query: 250 VAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAV---HFHDTYGQA 306
           +A +   + + G + I++ DT+G   P         ++   P     V   H H+  G A
Sbjct: 159 LAEICGAVIEAGATTINIPDTVGYSIPYKTEEFFRELIAKTPNGGKVVWSAHCHNDLGLA 218
Query: 307 LSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYML----NGLGVRTNVDIR 362
           ++N LA+L+ G   V+ +V+GLG        +GN + E++V  L    +  G+ T +D  
Sbjct: 219 VANSLAALKGGARQVECTVNGLG------ERAGNASVEEIVMALKVRHDLFGLETGIDTT 272
Query: 363 KLM 365
           +++
Sbjct: 273 QIV 275

>pdb|3EWB|X Chain X, Crystal Structure Of N-Terminal Domain Of Putative 2- Isopropylmalate Synthase From Listeria Monocytogenes Length = 293

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 55/122 (45%), Gaps = 13/122 (10%)
Query: 259 DMGCSEISLGDTIGVGTP---GTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQ 315
           D G + I++ DT+G   P   G +   L   +        A H HD  G A +N LA+++
Sbjct: 161 DAGATVINIPDTVGYTNPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGXATANALAAIE 220
Query: 316 MGISTVDSSVSGLGGCPYAKGASGNVATEDVVYML----NGLGVRTNVDIRKLMIAGDFI 371
            G   V+ +++G+G        +GN A E+V   L    +     TN+ + +   + D I
Sbjct: 221 NGARRVEGTINGIG------ERAGNTALEEVAVALHIRKDFYQAETNIVLNQFKNSSDLI 274
Query: 372 CK 373
            +
Sbjct: 275 SR 276

>pdb|2ZTJ|A Chain A, Crystal Structure Of Homocitrate Synthase From Thermus Thermophilus Complexed With Alpha-Ketoglutarate Length = 382

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 265 ISLGDTIGVGTPGTVIPMLEAVLDAV-PVDKLAVHFHDTYGQALSNILASLQMGISTVDS 323
           + L DT+GV TP  V  ++  V   V P   +  H H+  G A++N   +++ G + VD+
Sbjct: 161 VGLADTVGVATPRQVYALVREVRRVVGPRVDIEFHGHNDTGCAIANAYEAIEAGATHVDT 220
Query: 324 SVSGLG 329
           ++ G+G
Sbjct: 221 TILGIG 226

>pdb|3A9I|A Chain A, Crystal Structure Of Homocitrate Synthase From Thermus Thermophilus Complexed With Lys Length = 376

Iteration: 1
 Score = 41.6 bits (96), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 265 ISLGDTIGVGTPGTVIPMLEAVLDAV-PVDKLAVHFHDTYGQALSNILASLQMGISTVDS 323
           + L DT+GV TP  V  ++  V   V P   +  H H+  G A++N   +++ G + VD+
Sbjct: 161 VGLADTVGVATPRQVYALVREVRRVVGPRVDIEFHGHNDTGCAIANAYEAIEAGATHVDT 220
Query: 324 SVSGLG 329
           ++ G+G
Sbjct: 221 TILGIG 226

>pdb|3BLE|A Chain A, Crystal Structure Of The Catalytic Domain Of Licms In Complexed With Malonate Length = 337

Iteration: 1
 Score = 41.6 bits (96), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 21/83 (25%), Positives = 42/83 (50%)
Query: 247 PSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQA 306
           P  V  + + L       I L DT+GV +P      +++++   P      H H+ Y  +
Sbjct: 168 PDYVKSLVEHLSKEHIERIFLPDTLGVLSPEETFQGVDSLIQKYPDIHFEFHGHNDYDLS 227
Query: 307 LSNILASLQMGISTVDSSVSGLG 329
           ++N L +++ G+  + +S++GLG
Sbjct: 228 VANSLQAIRAGVKGLHASINGLG 250

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	398
2cw6_A	298	Hydroxymethylglutaryl-COA lyase, mitochondrial; HM	0.0
1ydo_A	307	HMG-COA lyase; TIM-barrel protein, structural geno	0.0
2ftp_A	302	Hydroxymethylglutaryl-COA lyase; structural genomi	0.0
1ydn_A	295	Hydroxymethylglutaryl-COA lyase; TIM-barrel protei	1e-180
1nvm_A	345	HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered	8e-17
3dxi_A	320	Putative aldolase; TIM barrel, 11107N, PSI2, NYSGX	1e-14
3ivs_A	423	Homocitrate synthase, mitochondrial; TIM barrel, m	3e-09
1rqb_A	539	Transcarboxylase 5S subunit; TIM-barrel, carbamyla	1e-08
2ztj_A	382	Homocitrate synthase; (beta/alpha)8 TIM barrel, su	2e-08
2nx9_A	464	Oxaloacetate decarboxylase 2, subunit alpha; carbo	3e-08
3ble_A	337	Citramalate synthase from leptospira interrogans;	9e-08
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
3eeg_A	325	2-isopropylmalate synthase; 11106D, beta barrel, P	1e-05
3rmj_A	370	2-isopropylmalate synthase; LEUA, truncation, neis	1e-05
3ewb_X	293	2-isopropylmalate synthase; LEUA, structural genom	3e-05
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	4e-05
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	2e-04

>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* Length = 298

 Score =  515 bits (1328), Expect = 0.0
 Identities = 189/295 (64%), Positives = 231/295 (78%)

Query: 95  PGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAK 154
           P  VKIVEVGPRDGLQNEKNIV   VK++LI +L  +GL+V+E TSFVSPKWVPQ+ D  
Sbjct: 3   PKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDHT 62

Query: 155 DVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIR 214
           +V+  IQ   G  +PVLTPNLKGFEAAVAAGAKEV IF +ASE F+K NINC+IE+S  R
Sbjct: 63  EVLKGIQKFPGINYPVLTPNLKGFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQR 122

Query: 215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVG 274
           +  +  AA+  +I VRGY+SC +GCP EG + P+KVA V+K+ Y MGC EISLGDTIGVG
Sbjct: 123 FDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAEVTKKFYSMGCYEISLGDTIGVG 182

Query: 275 TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYA 334
           TPG +  ML AV+  VP+  LAVH HDTYGQAL+N L +LQMG+S VDSSV+GLGGCPYA
Sbjct: 183 TPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQMGVSVVDSSVAGLGGCPYA 242

Query: 335 KGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSK 389
           +GASGN+ATED+VYML GLG+ T V+++KL+ AG+FIC+ L R + SK A A  K
Sbjct: 243 QGASGNLATEDLVYMLEGLGIHTGVNLQKLLEAGNFICQALNRKTSSKVAQATCK 297

>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} Length = 307

 Score =  513 bits (1323), Expect = 0.0
 Identities = 132/296 (44%), Positives = 183/296 (61%)

Query: 95  PGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAK 154
           P  V I EVGPRDGLQNE   +    K+  I  L  +GL+ +E TSFV PKW+P L DA 
Sbjct: 4   PKKVTIKEVGPRDGLQNEPVWIATEDKITWINQLSRTGLSYIEITSFVHPKWIPALRDAI 63

Query: 155 DVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIR 214
           DV   I   +G  +  L PN +G E A+  G  E  +F SASE+ ++ NIN +  +SL  
Sbjct: 64  DVAKGIDREKGVTYAALVPNQRGLENALEGGINEACVFMSASETHNRKNINKSTSESLHI 123

Query: 215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVG 274
            + V   A++ ++  R YLS V GCP E  VP  +V  +S+ L++ G SE+SLGDTIG  
Sbjct: 124 LKQVNNDAQKANLTTRAYLSTVFGCPYEKDVPIEQVIRLSEALFEFGISELSLGDTIGAA 183

Query: 275 TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYA 334
            P  V  +LEA+L   P +++A+HFHDT G AL+N++ +LQMGI+  D S  GLGGCPYA
Sbjct: 184 NPAQVETVLEALLARFPANQIALHFHDTRGTALANMVTALQMGITVFDGSAGGLGGCPYA 243

Query: 335 KGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKT 390
            G+SGN ATED+VYML  + ++TNV + KL+ A  +I + +G+   S+       +
Sbjct: 244 PGSSGNAATEDIVYMLEQMDIKTNVKLEKLLSAAKWIEEKMGKPLPSRNLQVFKSS 299

>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} Length = 302

 Score =  510 bits (1315), Expect = 0.0
 Identities = 169/293 (57%), Positives = 220/293 (75%)

Query: 95  PGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAK 154
           P  V++VEVGPRDGLQNEK  +    K+ L+  L ++GL  +E  SFVSPKWVPQ+A + 
Sbjct: 6   PKKVRLVEVGPRDGLQNEKQPIEVADKIRLVDDLSAAGLDYIEVGSFVSPKWVPQMAGSA 65

Query: 155 DVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIR 214
           +V A I+   G  +  L PNLKGFEAA+ +G KEVA+FA+ASE+FS+ NINC+I+DSL R
Sbjct: 66  EVFAGIRQRPGVTYAALAPNLKGFEAALESGVKEVAVFAAASEAFSQRNINCSIKDSLER 125

Query: 215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVG 274
           +  V  AAR+  + VRGY+SCV+GCP +G V P +VA+V+++L  MGC E+SLGDTIGVG
Sbjct: 126 FVPVLEAARQHQVRVRGYISCVLGCPYDGDVDPRQVAWVARELQQMGCYEVSLGDTIGVG 185

Query: 275 TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYA 334
           T G    ++EAV   VP ++LA HFHDTYGQAL+NI ASL  GI+  DSSV+GLGGCPYA
Sbjct: 186 TAGATRRLIEAVASEVPRERLAGHFHDTYGQALANIYASLLEGIAVFDSSVAGLGGCPYA 245

Query: 335 KGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIAL 387
           KGA+GNVA+EDV+Y+LNGL + T VD+  L+ AG  IC  LG+++GS+ A AL
Sbjct: 246 KGATGNVASEDVLYLLNGLEIHTGVDMHALVDAGQRICAVLGKSNGSRAAKAL 298

>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} Length = 295

 Score =  502 bits (1296), Expect = e-180
 Identities = 155/294 (52%), Positives = 195/294 (66%), Gaps = 1/294 (0%)

Query: 95  PGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAK 154
              V+IVE+  RDGLQNEK  VP   K+ LI  L   G A +EATSFVSPKWVPQLAD++
Sbjct: 2   AEHVEIVEMAARDGLQNEKRFVPTADKIALINRLSDCGYARIEATSFVSPKWVPQLADSR 61

Query: 155 DVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIR 214
           +VMA I+  +G R+ VL PN+KG+EAA AA A E+A+F SASE FSK+NINCTI +S+ R
Sbjct: 62  EVMAGIRRADGVRYSVLVPNMKGYEAAAAAHADEIAVFISASEGFSKANINCTIAESIER 121

Query: 215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVG 274
              V  AA    + +RGY+SCVV CP +G V P  VA V++QL+ +GC E+SLGDTIG G
Sbjct: 122 LSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASVTEQLFSLGCHEVSLGDTIGRG 181

Query: 275 TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYA 334
           TP TV  ML+AVL   P   LA H+HDT G+AL NI  SL+ G+   D+SV GLGGCP+A
Sbjct: 182 TPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRALDNIRVSLEKGLRVFDASVGGLGGCPFA 241

Query: 335 KGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALS 388
            GA GNV T  VV ML+ +G  T +D+ +L  AG F    L +   +       
Sbjct: 242 PGAKGNVDTVAVVEMLHEMGFETGLDLDRLRSAGLFTQA-LRQDKAALEHHHHH 294

>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 Length = 345

 Score = 80.0 bits (198), Expect = 8e-17
 Identities = 55/283 (19%), Positives = 106/283 (37%), Gaps = 37/283 (13%)

Query: 98  VKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEAT------SFVSPKWVPQLA 151
           + I +V  RDG    ++         + + L  + +  +E                 +  
Sbjct: 9   LYISDVTLRDGSHAIRHQYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHT 68

Query: 152 DAKDVMAAIQNVEGARFPVLTPNLKG----FEAAVAAGAKEVAIFASASESFSKSNINCT 207
           D + + A    +  A+   L     G     + A  AGA+ V +             +CT
Sbjct: 69  DLEYIEAVAGEISHAQIATLLLPGIGSVHDLKNAYQAGARVVRVA-----------THCT 117

Query: 208 IEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL 267
             D   ++ +    AR L +   G+        +  M+P  K+A   K +   G + I +
Sbjct: 118 EADVSKQHIE---YARNLGMDTVGF------LMMSHMIPAEKLAEQGKLMESYGATCIYM 168

Query: 268 GDTIGVGTPGTVIPMLEAVLDAVPVD-KLAVHFHDTYGQALSNILASLQMGISTVDSSVS 326
            D+ G  +   +   + A    +  + ++ +H H      ++N + +++ G   VD+S++
Sbjct: 169 ADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEGCDRVDASLA 228

Query: 327 GLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGD 369
           G+G      GA GN   E  + +   LG     D+  LM A D
Sbjct: 229 GMG-----AGA-GNAPLEVFIAVAERLGWNHGTDLYTLMDAAD 265

>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482} Length = 320

 Score = 73.2 bits (180), Expect = 1e-14
 Identities = 52/278 (18%), Positives = 89/278 (32%), Gaps = 57/278 (20%)

Query: 98  VKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVM 157
           +  +EVG R+    E         V ++K L             +S K +  + + K+  
Sbjct: 38  IDYLEVGYRNKPSKEYMGKFGYTPVSVLKHL-----------RNISTKKIAIMLNEKNTT 86

Query: 158 AAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRD 217
                           +L      +      + I           NI+  I   L +   
Sbjct: 87  PE--------------DLNHLLLPIIGLVDMIRIA------IDPQNIDRAIV--LAKA-- 122

Query: 218 VALAARELSIPVRGYLSCVVGCPVEGM--VPPSKVAYVSKQLYDMGCSEISLGDTIGVGT 275
                + +     G+    VG  V  M             +  D       + D+ G  T
Sbjct: 123 ----IKTM-----GFE---VGFNVMYMSKWAEMNGFLSKLKAIDKIADLFCMVDSFGGIT 170

Query: 276 PGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAK 335
           P  V  +L+ V     V  +  H HD     L N + ++  GI  +D++++G+G     +
Sbjct: 171 PKEVKNLLKEVRKYTHVP-VGFHGHDNLQLGLINSITAIDDGIDFIDATITGMG-----R 224

Query: 336 GASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICK 373
           GA GN+  E ++  LN      NVD   L         
Sbjct: 225 GA-GNLKMELLLTYLN-KHHGLNVDFNVLGNIITTFTP 260

>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A* Length = 423

 Score = 57.6 bits (140), Expect = 3e-09
 Identities = 52/280 (18%), Positives = 102/280 (36%), Gaps = 38/280 (13%)

Query: 98  VKIVEVGPRDGLQNEKNIVPAVV-----KVELIKLLVSSGLAVVEATS-FVSPKWVPQLA 151
             I+E   R+G Q               K+++ K L + G+  +E TS   S        
Sbjct: 40  FSIIESTLREGEQ-----FANAFFDTEKKIQIAKALDNFGVDYIELTSPVASE------Q 88

Query: 152 DAKDVMAAIQNVEGARFPVLT-PNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIED 210
             +D  A  +     +       ++     AV  G   V +    S+   K +    +  
Sbjct: 89  SRQDCEAICKLGLKCKILTHIRCHMDDARVAVETGVDGVDVVIGTSQYLRKYSHGKDMTY 148

Query: 211 SLIRYRDVALAARELSIPVRGYLSCVVGCPVE--GMVPPSKVAYVSKQLYDMGCSEISLG 268
            +    +V    +   I VR   S       E         +  + K +  +G + + + 
Sbjct: 149 IIDSATEVINFVKSKGIEVR--FSS------EDSFRSDLVDLLSLYKAVDKIGVNRVGIA 200

Query: 269 DTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGL 328
           DT+G  TP  V  ++  +   V  D +  HFH+  G A++N   +L+ G + +D+S+ G+
Sbjct: 201 DTVGCATPRQVYDLIRTLRGVVSCD-IECHFHNDTGMAIANAYCALEAGATHIDTSILGI 259

Query: 329 GGCPYAKGASGNVATEDVV---YMLNGLGVRTNVDIRKLM 365
           G        +G      ++   Y+ +   +     + +L 
Sbjct: 260 G------ERNGITPLGALLARMYVTDREYITHKYKLNQLR 293

>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* Length = 539

 Score = 55.7 bits (135), Expect = 1e-08
 Identities = 33/122 (27%), Positives = 51/122 (41%), Gaps = 21/122 (17%)

Query: 252 YVS--KQLYDMGCSEISLGDTIGVGTPGT----VIPMLEAVLDAVPVDKLAVHFHDTYGQ 305
           YV    QL DMG   I+L D   +  P      +  + +       ++   +H H T G 
Sbjct: 177 YVKLAGQLLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQIN---LHCHSTTGV 233

Query: 306 ALSNILASLQMGISTVD---SSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIR 362
              +++ +++ G+  VD   SS+S   G            TE V  ML G G  TN+D  
Sbjct: 234 TEVSLMKAIEAGVDVVDTAISSMSLGPGHN---------PTESVAEMLEGTGYTTNLDYD 284

Query: 363 KL 364
           +L
Sbjct: 285 RL 286

>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A* Length = 382

 Score = 54.5 bits (132), Expect = 2e-08
 Identities = 26/112 (23%), Positives = 46/112 (41%), Gaps = 12/112 (10%)

Query: 259 DMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDK--LAVHFHDTYGQALSNILASLQM 316
                 + L DT+GV TP  V  ++  V   V   +  +  H H+  G A++N   +++ 
Sbjct: 155 APYVDRVGLADTVGVATPRQVYALVREVRRVVG-PRVDIEFHGHNDTGCAIANAYEAIEA 213

Query: 317 GISTVDSSVSGLGGCPYAKGASGNVATEDVV---YMLNGLGVRTNVDIRKLM 365
           G + VD+++ G+G        +G       +   Y L    VR    +  L 
Sbjct: 214 GATHVDTTILGIG------ERNGITPLGGFLARMYTLQPEYVRRKYKLEMLP 259

>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} Length = 464

 Score = 54.5 bits (132), Expect = 3e-08
 Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 21/121 (17%)

Query: 252 YVS--KQLYDMGCSEISLGDTIGVGTP---GTVIPMLEAVLDAVPVDKLAVHFHDTYGQA 306
           +V   +QL ++G   I+L D  G+ TP     ++  L+  +D V +    +H H T G A
Sbjct: 160 WVDVAQQLAELGVDSIALKDMAGILTPYAAEELVSTLKKQVD-VELH---LHCHSTAGLA 215

Query: 307 LSNILASLQMGISTVD---SSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRK 363
              +L +++ G+  VD   SS+SG  G P         ATE +V  L G G  T +DI K
Sbjct: 216 DMTLLKAIEAGVDRVDTAISSMSGTYGHP---------ATESLVATLQGTGYDTGLDIAK 266

Query: 364 L 364
           L
Sbjct: 267 L 267

>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* Length = 337

 Score = 52.5 bits (127), Expect = 9e-08
 Identities = 24/108 (22%), Positives = 51/108 (47%), Gaps = 7/108 (6%)

Query: 259 DMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGI 318
                 I L DT+GV +P      +++++   P      H H+ Y  +++N L +++ G+
Sbjct: 180 KEHIERIFLPDTLGVLSPEETFQGVDSLIQKYPDIHFEFHGHNDYDLSVANSLQAIRAGV 239

Query: 319 STVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGL-GVRTNVDIRKLM 365
             + +S++GLG        +GN   E +V  ++     +TN++   + 
Sbjct: 240 KGLHASINGLG------ERAGNTPLEALVTTIHDKSNSKTNINEIAIT 281

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A Length = 718

 Score = 50.8 bits (122), Expect = 5e-07
 Identities = 24/118 (20%), Positives = 47/118 (39%), Gaps = 14/118 (11%)

Query: 252 YVS--KQLYDMGCSEISLGDTIGVGTP---GTVIPMLEAVLDAVPVDKLAVHFHDTYGQA 306
           Y+   ++L   G   + + D  G+  P     ++  L      +P+    +H HDT G  
Sbjct: 263 YMGLAEELVRAGTHILCIKDMAGLLKPTACTMLVSSLRDRFPDLPLH---IHTHDTSGAG 319

Query: 307 LSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKL 364
           ++ +LA  Q G   VD +   + G       +   +   +V    G  + T V + ++
Sbjct: 320 VAAMLACAQAGADVVDVAADSMSGM------TSQPSMGALVACTRGTPLDTEVPMERV 371

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.9 bits (118), Expect = 1e-06
 Identities = 63/341 (18%), Positives = 117/341 (34%), Gaps = 89/341 (26%)

Query: 80  DNSTKDLTSKLLGRVPGFVKIVEVG-----PRDGLQNE--KNIVPAVVKVE----LIKLL 128
               KD+ S        FV   +       P+  L  E   +I+ +   V     L   L
Sbjct: 15  QYQYKDILSVFE---DAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTL 71

Query: 129 VSSGLAVVEATSFVSPKWVPQLADAKD---VMAAIQNVEGARFPVLTPNLKGFEAAVAAG 185
           +S    +V+   FV            +   +M+ I+     R P  +   + +       
Sbjct: 72  LSKQEEMVQK--FVEE------VLRINYKFLMSPIKTE--QRQP--SMMTRMYI------ 113

Query: 186 AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMV 245
            ++     + ++ F+K N+  +     ++ R    A  EL  P +     V+   ++G++
Sbjct: 114 -EQRDRLYNDNQVFAKYNV--SRLQPYLKLRQ---ALLELR-PAKN----VL---IDGVL 159

Query: 246 PPSK---VAYVSKQLYDMGCSE------ISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLA 296
              K      V    Y + C        ++L +     +P TV+ ML+         KL 
Sbjct: 160 GSGKTWVALDVCLS-YKVQCKMDFKIFWLNLKN---CNSPETVLEMLQ---------KLL 206

Query: 297 VHFHDTYGQALSNILASLQMGISTVDSSVSGL-GGCPYAKGASGNVATEDVVYMLNGLGV 355
               D    + S+  +++++ I ++ + +  L    PY                 N L V
Sbjct: 207 YQI-DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE----------------NCLLV 249

Query: 356 RTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANAS 396
             NV   K   A +  CK L  T   +    LS  +T + S
Sbjct: 250 LLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS 290

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 4e-04
 Identities = 58/330 (17%), Positives = 104/330 (31%), Gaps = 88/330 (26%)

Query: 23  KESLGVAKFASVGVNSLKGGNLDYTREKTISRKQVRNVSCTNLNGYLSKAHYSSSCTDNS 82
           K+   V KF    V  +   N  +      + ++  ++          + +      DN 
Sbjct: 74  KQEEMVQKF----VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLY-----NDN- 123

Query: 83  TKDLTSKL-LGRVPGFVKIVEVGPRDGLQN---EKNIVPAVV-------KVELIKLLVSS 131
              + +K  + R+  ++K+     R  L      KN++   +       K  +  L V  
Sbjct: 124 --QVFAKYNVSRLQPYLKL-----RQALLELRPAKNVL---IDGVLGSGKTWVA-LDVCL 172

Query: 132 GLAVVEATSF-VSPKW--VPQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKE 188
              V     F +   W  +      + V+  +Q +       + PN              
Sbjct: 173 SYKVQCKMDFKIF--WLNLKNCNSPETVLEMLQKL----LYQIDPNWT------------ 214

Query: 189 VAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSC------V------ 236
                  S S   SNI   I    I+        R L +  + Y +C      V      
Sbjct: 215 -------SRSDHSSNIKLRIHS--IQAEL-----RRL-LKSKPYENCLLVLLNVQNAKAW 259

Query: 237 ----VGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPV 292
               + C +  ++  ++   V+  L     + ISL       TP  V  +L   LD    
Sbjct: 260 NAFNLSCKI--LLT-TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD-CRP 315

Query: 293 DKLAVHFHDTYGQALSNILASLQMGISTVD 322
             L      T  + LS I  S++ G++T D
Sbjct: 316 QDLPREVLTTNPRRLSIIAESIRDGLATWD 345

>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} Length = 325

 Score = 45.6 bits (109), Expect = 1e-05
 Identities = 34/112 (30%), Positives = 59/112 (52%), Gaps = 13/112 (11%)

Query: 261 GCSEISLGDTIGVGTPGTVIPMLEAVLDAVP-VDK--LAVHFHDTYGQALSNILASLQMG 317
           G   +++ DT G   P      ++ ++D V  +DK  L+ H H+  G A +N LA+LQ G
Sbjct: 164 GADVVNIPDTTGYMLPWQYGERIKYLMDNVSNIDKAILSAHCHNDLGLATANSLAALQNG 223

Query: 318 ISTVDSSVSGLGGCPYAKGASGNVATEDVVYML----NGLGVRTNVDIRKLM 365
              V+ +++G+G        +GN A E+VV  +      LG+ T ++ +KL+
Sbjct: 224 ARQVECTINGIG------ERAGNTALEEVVMAMECHKETLGLETGINHKKLV 269

>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} Length = 370

 Score = 46.0 bits (110), Expect = 1e-05
 Identities = 30/114 (26%), Positives = 55/114 (48%), Gaps = 13/114 (11%)

Query: 259 DMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVP-VDK--LAVHFHDTYGQALSNILASLQ 315
           + G + I++ DT+G   P         ++   P   K   + H H+  G A++N LA+L+
Sbjct: 168 EAGATTINIPDTVGYSIPYKTEEFFRELIAKTPNGGKVVWSAHCHNDLGLAVANSLAALK 227

Query: 316 MGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLN----GLGVRTNVDIRKLM 365
            G   V+ +V+GLG        +GN + E++V  L       G+ T +D  +++
Sbjct: 228 GGARQVECTVNGLG------ERAGNASVEEIVMALKVRHDLFGLETGIDTTQIV 275

>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} Length = 293

 Score = 44.4 bits (106), Expect = 3e-05
 Identities = 28/112 (25%), Positives = 51/112 (45%), Gaps = 13/112 (11%)

Query: 261 GCSEISLGDTIGVGTPGTVIPMLEAVLDAVP-VDK--LAVHFHDTYGQALSNILASLQMG 317
           G + I++ DT+G   P     + + +   +   D    A H HD  G A +N LA+++ G
Sbjct: 163 GATVINIPDTVGYTNPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGMATANALAAIENG 222

Query: 318 ISTVDSSVSGLGGCPYAKGASGNVATEDVVYML----NGLGVRTNVDIRKLM 365
              V+ +++G+G        +GN A E+V   L    +     TN+ + +  
Sbjct: 223 ARRVEGTINGIG------ERAGNTALEEVAVALHIRKDFYQAETNIVLNQFK 268

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 3hb9_A* Length = 1150

 Score = 45.0 bits (107), Expect = 4e-05
 Identities = 25/114 (21%), Positives = 52/114 (45%), Gaps = 11/114 (9%)

Query: 253 VSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAV--PVDKLAVHFHDTYGQALSNI 310
           ++K+L   G   +++ D  G+  P     ++  +  AV  P+    +H HDT G  L   
Sbjct: 697 LAKELEREGFHILAIKDMAGLLKPKAAYELIGELKSAVDLPIH---LHTHDTSGNGLLTY 753

Query: 311 LASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKL 364
             ++  G+  +D++V+ + G   ++ ++ +     + Y LNG       DI  +
Sbjct: 754 KQAIDAGVDIIDTAVASMSGL-TSQPSANS-----LYYALNGFPRHLRTDIEGM 801

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Length = 1165

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 27/114 (23%), Positives = 53/114 (46%), Gaps = 11/114 (9%)

Query: 253 VSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAV--PVDKLAVHFHDTYGQALSNI 310
           ++ +L   G   I++ D  G+  P     + +A+ +A   P+     H HDT G A + +
Sbjct: 714 LAVELEKAGAHIIAVKDMAGLLKPAAAKVLFKALREATGLPIH---FHTHDTSGIAAATV 770

Query: 311 LASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKL 364
           LA+++ G+  VD+++  L G   ++   G      +V  L+G      +D   +
Sbjct: 771 LAAVEAGVDAVDAAMDALSGN-TSQPCLG-----SIVEALSGSERDPGLDPAWI 818

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	398
1ydo_A	307	HMG-COA lyase; TIM-barrel protein, structural geno	100.0
2cw6_A	298	Hydroxymethylglutaryl-COA lyase, mitochondrial; HM	100.0
2ftp_A	302	Hydroxymethylglutaryl-COA lyase; structural genomi	100.0
3rmj_A	370	2-isopropylmalate synthase; LEUA, truncation, neis	100.0
3eeg_A	325	2-isopropylmalate synthase; 11106D, beta barrel, P	100.0
1ydn_A	295	Hydroxymethylglutaryl-COA lyase; TIM-barrel protei	100.0
3ble_A	337	Citramalate synthase from leptospira interrogans;	100.0
3ivs_A	423	Homocitrate synthase, mitochondrial; TIM barrel, m	100.0
2ztj_A	382	Homocitrate synthase; (beta/alpha)8 TIM barrel, su	100.0
3ewb_X	293	2-isopropylmalate synthase; LEUA, structural genom	100.0
3hq1_A	644	2-isopropylmalate synthase; LEUA, mycobacterium tu	100.0
1rqb_A	539	Transcarboxylase 5S subunit; TIM-barrel, carbamyla	100.0
1nvm_A	345	HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered	100.0
2nx9_A	464	Oxaloacetate decarboxylase 2, subunit alpha; carbo	100.0
3dxi_A	320	Putative aldolase; TIM barrel, 11107N, PSI2, NYSGX	100.0
3bg3_A	718	Pyruvate carboxylase, mitochondrial; TIM barrel, A	100.0
2qf7_A	1165	Pyruvate carboxylase protein; multi-domain, multi-	100.0
3hbl_A	1150	Pyruvate carboxylase; TIM barrel, ligase; HET: BTI	100.0
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	98.74
3t7v_A	350	Methylornithine synthase PYLB; TIM-barrel fold, mu	98.69
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	98.29
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	98.23
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	98.22
3f4w_A	211	Putative hexulose 6 phosphate synthase; humps, mal	98.15
3iix_A	348	Biotin synthetase, putative; adoMet radical, SAM r	98.07
1rd5_A	262	Tryptophan synthase alpha chain, chloroplast; hydr	97.89
1r30_A	369	Biotin synthase; SAM radical protein, TIM barrel,	97.71
3lab_A	217	Putative KDPG (2-keto-3-deoxy-6-phosphogluconate)	97.57
3txv_A	450	Probable tagatose 6-phosphate kinase; structural g	97.46
3tha_A	252	Tryptophan synthase alpha chain; structural genomi	97.44
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	97.44
1wa3_A	205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	97.43
1eye_A	280	DHPS 1, dihydropteroate synthase I; alpha-beta bar	97.23
2isw_A	323	Putative fructose-1,6-bisphosphate aldolase; class	97.17
3r12_A	260	Deoxyribose-phosphate aldolase; TIM beta/alpha-bar	97.09
1geq_A	248	Tryptophan synthase alpha-subunit; hyperthermophIl	97.09
3oa3_A	288	Aldolase; structural genomics, seattle structural	97.08
2dqw_A	294	Dihydropteroate synthase; dimer, structural genomi	97.07
1w8s_A	263	FBP aldolase, fructose-bisphosphate aldolase class	96.94
1rvg_A	305	Fructose-1,6-bisphosphate aldolase; class II aldol	96.92
1h1y_A	228	D-ribulose-5-phosphate 3-epimerase; oxidative pent	96.91
3q94_A	288	Fructose-bisphosphate aldolase, class II; structur	96.85
4h3d_A	258	3-dehydroquinate dehydratase; structural genomics,	96.83
1tqj_A	230	Ribulose-phosphate 3-epimerase; beta-alpha barrel	96.83
1aj0_A	282	DHPS, dihydropteroate synthase; antibiotic, resist	96.82
1n7k_A	234	Deoxyribose-phosphate aldolase; A.pernix, tetramer	96.8
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	96.77
3ctl_A	231	D-allulose-6-phosphate 3-epimerase; D-glucitol 6-p	96.74
3ngj_A	239	Deoxyribose-phosphate aldolase; lyase, structural	96.71
2yw3_A	207	4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deox	96.71
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	96.7
3noy_A	366	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	96.69
1vli_A	385	Spore coat polysaccharide biosynthesis protein SP;	96.67
1h5y_A	253	HISF; histidine biosynthesis, TIM-barrel; 2.0A {Py	96.66
1p1x_A	260	Deoxyribose-phosphate aldolase; alpha-beta barrel,	96.64
3ngf_A	269	AP endonuclease, family 2; structural genomics, se	96.63
1to3_A	304	Putative aldolase YIHT; beta-alpha barrel, structu	96.62
1ub3_A	220	Aldolase protein; schiff base, deoxyribose phospha	96.58
1gvf_A	286	Tagatose-bisphosphate aldolase AGAY; lyase, zinc.;	96.51
1mxs_A	225	KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate a	96.51
2wqp_A	349	Polysialic acid capsule biosynthesis protein SIAC;	96.5
1rpx_A	230	Protein (ribulose-phosphate 3-epimerase); chloropl	96.49
1tx2_A	297	DHPS, dihydropteroate synthase; folate biosynthesi	96.46
3ndo_A	231	Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid	96.46
2y5s_A	294	DHPS, dihydropteroate synthase; transferase, folat	96.43
2vp8_A	318	Dihydropteroate synthase 2; RV1207 transferase, fo	96.39
2h9a_B	310	CO dehydrogenase/acetyl-COA synthase, iron- sulfur	96.39
3n9r_A	307	Fructose-bisphosphate aldolase; FBP aldolase, clas	96.39
3o1n_A	276	3-dehydroquinate dehydratase; structural genomics,	96.38
3k13_A	300	5-methyltetrahydrofolate-homocysteine methyltrans;	96.37
3tr9_A	314	Dihydropteroate synthase; biosynthesis of cofactor	96.34
1vhc_A	224	Putative KHG/KDPG aldolase; structural genomics, u	96.32
1vcv_A	226	Probable deoxyribose-phosphate aldolase; DERA, hyp	96.27
1f6y_A	262	5-methyltetrahydrofolate corrinoid/iron sulfur PR	96.25
3kws_A	287	Putative sugar isomerase; structural genomics, joi	96.24
1wbh_A	214	KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli}	96.19
1k77_A	260	EC1530, hypothetical protein YGBM; TIM barrel, str	96.19
2yci_X	271	5-methyltetrahydrofolate corrinoid/iron sulfur PR	96.11
1qtw_A	285	Endonuclease IV; DNA repair enzyme, TIM barrel, tr	96.1
3inp_A	246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	96.07
2qjg_A	273	Putative aldolase MJ0400; beta-alpha barrel, lyase	96.02
3jr2_A	218	Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulon	95.96
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	95.84
1mzh_A	225	Deoxyribose-phosphate aldolase; alpha-beta barrel,	95.79
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	95.76
4hb7_A	270	Dihydropteroate synthase; transferase; 1.95A {Stap	95.74
2vef_A	314	Dihydropteroate synthase; antibiotic resistance, t	95.67
2a4a_A	281	Deoxyribose-phosphate aldolase; lyase, TIM beta/al	95.47
3qja_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	95.43
3tva_A	290	Xylose isomerase domain protein TIM barrel; struct	95.36
2v82_A	212	2-dehydro-3-deoxy-6-phosphogalactonate aldolase; l	95.35
3glc_A	295	Aldolase LSRF; TIM barrel, lyase, schiff base; HET	95.35
4eiv_A	297	Deoxyribose-phosphate aldolase; chemotherapy, brai	95.35
3qxb_A	316	Putative xylose isomerase; structural genomics, jo	95.33
1ka9_F	252	Imidazole glycerol phosphtate synthase; riken stru	95.3
1sfl_A	238	3-dehydroquinate dehydratase; 3-dehydroquinase, en	95.27
3pm6_A	306	Putative fructose-bisphosphate aldolase; structura	95.23
2qgq_A	304	Protein TM_1862; alpha-beta protein, structural ge	95.2
3cu2_A	237	Ribulose-5-phosphate 3-epimerase; YP_718263.1, rib	95.18
1q7z_A	566	5-methyltetrahydrofolate S-homocysteine methyltran	95.11
3ih1_A	305	Methylisocitrate lyase; alpha-beta structure, TIM-	95.08
2fli_A	220	Ribulose-phosphate 3-epimerase; (beta/alpha)8-barr	95.06
3vni_A	294	Xylose isomerase domain protein TIM barrel; D-psic	95.06
3nvt_A	385	3-deoxy-D-arabino-heptulosonate 7-phosphate synth;	95.04
1tqx_A	227	D-ribulose-5-phosphate 3-epimerase, putative; stru	95.01
1thf_D	253	HISF protein; thermophIle, TIM-barrel, histidine b	95.0
3sz8_A	285	2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgci	94.95
1vzw_A	244	Phosphoribosyl isomerase A; histidine biosynthesis	94.84
3cqj_A	295	L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barre	94.67
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	94.67
3lmz_A	257	Putative sugar isomerase; structural genomics, joi	94.64
1tv8_A	340	MOAA, molybdenum cofactor biosynthesis protein A;	94.64
3g8r_A	350	Probable spore coat polysaccharide biosynthesis P;	94.5
2q02_A	272	Putative cytoplasmic protein; structural genomics,	94.48
2qul_A	290	D-tagatose 3-epimerase; beta/alpha barrel, isomera	94.48
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	94.43
3lye_A	307	Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre	94.42
2w6r_A	266	Imidazole glycerol phosphate synthase subunit HISF	94.21
1zco_A	262	2-dehydro-3-deoxyphosphoheptonate aldolase; arabin	94.19
3fa4_A	302	2,3-dimethylmalate lyase; alpha/beta barrel, helix	94.18
3hgj_A	349	Chromate reductase; TIM barrel, oxidoreductase; HE	94.0
3aam_A	270	Endonuclease IV, endoiv; DNA repair, base excision	93.99
3n9r_A	307	Fructose-bisphosphate aldolase; FBP aldolase, clas	93.98
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	93.97
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	93.92
2yr1_A	257	3-dehydroquinate dehydratase; amino acid biosynthe	93.89
3qc0_A	275	Sugar isomerase; TIM barrel, structural genomics,	93.88
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	93.85
2tps_A	227	Protein (thiamin phosphate synthase); thiamin bios	93.74
3rys_A	343	Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2	93.73
1olt_A	457	Oxygen-independent coproporphyrinogen III oxidase;	93.67
3aal_A	303	Probable endonuclease 4; endoiv, DNA repair, base	93.62
1ujp_A	271	Tryptophan synthase alpha chain; riken structural	93.6
2gou_A	365	Oxidoreductase, FMN-binding; OLD yeallow enzyme, f	93.57
3iwp_A	287	Copper homeostasis protein CUTC homolog; conserved	93.56
2ekc_A	262	AQ_1548, tryptophan synthase alpha chain; structur	93.53
3eoo_A	298	Methylisocitrate lyase; seattle structural genomic	93.44
1vs1_A	276	3-deoxy-7-phosphoheptulonate synthase; (beta/alpha	93.43
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	93.4
3mcm_A	442	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine	93.36
1qwg_A	251	PSL synthase;, (2R)-phospho-3-sulfolactate synthas	93.31
1vr6_A	350	Phospho-2-dehydro-3-deoxyheptonate aldolase; TM034	93.17
2hk0_A	309	D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00	93.12
2isw_A	323	Putative fructose-1,6-bisphosphate aldolase; class	93.07
2a4a_A	281	Deoxyribose-phosphate aldolase; lyase, TIM beta/al	93.05
2y88_A	244	Phosphoribosyl isomerase A; aromatic amino acid bi	93.03
3fok_A	307	Uncharacterized protein CGL0159; CGL0159 ,brevibac	93.0
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	92.86
3elf_A	349	Fructose-bisphosphate aldolase; zinc enzyme, dihyd	92.86
3obe_A	305	Sugar phosphate isomerase/epimerase; structural ge	92.8
3r12_A	260	Deoxyribose-phosphate aldolase; TIM beta/alpha-bar	92.75
2r14_A	377	Morphinone reductase; H-tunnelling, flavoprotein,	92.64
1ep3_A	311	Dihydroorotate dehydrogenase B (PYRD subunit); het	92.44
3l5l_A	363	Xenobiotic reductase A; TIM barrel, oxidoreductase	92.44
2e6f_A	314	Dihydroorotate dehydrogenase; chagas disease, pyri	92.44
3iwp_A	287	Copper homeostasis protein CUTC homolog; conserved	92.29
1rd5_A	262	Tryptophan synthase alpha chain, chloroplast; hydr	92.28
3q94_A	288	Fructose-bisphosphate aldolase, class II; structur	92.26
1gvf_A	286	Tagatose-bisphosphate aldolase AGAY; lyase, zinc.;	92.21
3dx5_A	286	Uncharacterized protein ASBF; beta-alpha barrel, p	92.1
3l23_A	303	Sugar phosphate isomerase/epimerase; structural ge	92.0
2ze3_A	275	DFA0005; organic waste LEFT-OVER decomposition, al	92.0
3vnd_A	267	TSA, tryptophan synthase alpha chain; psychrophili	91.97
1xg4_A	295	Probable methylisocitrate lyase; 2-methylisocitrat	91.89
3iv3_A	332	Tagatose 1,6-diphosphate aldolase 2; TIM barrel, p	91.81
1vyr_A	364	Pentaerythritol tetranitrate reductase; oxidoreduc	91.81
3nav_A	271	Tryptophan synthase alpha chain; alpha subunit, st	91.77
3l21_A	304	DHDPS, dihydrodipicolinate synthase; DAPA, dimer,	91.77
3pao_A	326	Adenosine deaminase; structural genomics, PSI-2, p	91.61
4ab4_A	362	Xenobiotic reductase B; oxidoreductase, OLD yellow	91.61
1vyr_A	364	Pentaerythritol tetranitrate reductase; oxidoreduc	91.61
2pgf_A	371	Adenosine deaminase; metallo-dependent hydrolase,	91.61
1xi3_A	215	Thiamine phosphate pyrophosphorylase; structural g	91.59
2zvr_A	290	Uncharacterized protein TM_0416; hyperthermophIle,	91.58
3bdk_A	386	D-mannonate dehydratase; xylose isomerase-like TIM	91.53
3eoo_A	298	Methylisocitrate lyase; seattle structural genomic	91.51
3qm3_A	357	Fructose-bisphosphate aldolase; structural genomic	91.5
2c6q_A	351	GMP reductase 2; TIM barrel, metal-binding, NADP,	91.44
1ydn_A	295	Hydroxymethylglutaryl-COA lyase; TIM-barrel protei	91.37
3lgd_A	508	Adenosine deaminase CECR1; TIM barrel, dimerizatio	91.37
1rvg_A	305	Fructose-1,6-bisphosphate aldolase; class II aldol	91.36
3gka_A	361	N-ethylmaleimide reductase; decode biostructures,	91.36
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	91.31
3oa3_A	288	Aldolase; structural genomics, seattle structural	91.25
3fs2_A	298	2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid,	91.24
3ih1_A	305	Methylisocitrate lyase; alpha-beta structure, TIM-	91.22
1m5w_A	243	Pyridoxal phosphate biosynthetic protein PDXJ; TIM	91.2
1q7z_A	566	5-methyltetrahydrofolate S-homocysteine methyltran	91.19
1f8m_A	429	Isocitrate lyase, ICL; alpha-beta barrel, helix-sw	91.17
4djd_D	323	C/Fe-SP, corrinoid/iron-sulfur protein small subun	91.13
3lye_A	307	Oxaloacetate acetyl hydrolase; (alpha/beta)8 barre	91.09
2qiw_A	255	PEP phosphonomutase; structural genomics, joint ce	91.09
1dos_A	358	Aldolase class II; lyase, classii fructose 1,6-bis	91.01
1zlp_A	318	PSR132, petal death protein; TIM-barrel, helix swa	90.97
1eep_A	404	Inosine 5'-monophosphate dehydrogenase; alpha-beta	90.89
1o60_A	292	2-dehydro-3-deoxyphosphooctonate aldolase; structu	90.84
3kru_A	343	NADH:flavin oxidoreductase/NADH oxidase; homotetra	90.82
3eol_A	433	Isocitrate lyase; seattle structural center for in	90.77
3gr7_A	340	NADPH dehydrogenase; flavin, FMN, beta-alpha-barre	90.77
1icp_A	376	OPR1, 12-oxophytodienoate reductase 1; beta-alpha-	90.69
2z6i_A	332	Trans-2-enoyl-ACP reductase II; fatty acid synthes	90.67
2x7v_A	287	Probable endonuclease 4; DNA repair protein, metal	90.65
3dz1_A	313	Dihydrodipicolinate synthase; lysine biosynthesis,	90.65
3tak_A	291	DHDPS, dihydrodipicolinate synthase; TIM barrel, l	90.62
2vp8_A	318	Dihydropteroate synthase 2; RV1207 transferase, fo	90.6
1p1x_A	260	Deoxyribose-phosphate aldolase; alpha-beta barrel,	90.6
1zlp_A	318	PSR132, petal death protein; TIM-barrel, helix swa	90.56
3flu_A	297	DHDPS, dihydrodipicolinate synthase; TIM barrel, b	90.53
1z41_A	338	YQJM, probable NADH-dependent flavin oxidoreductas	90.5
1nvm_A	345	HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered	90.48
1ypf_A	336	GMP reductase; GUAC, purines, pyrimidines, nucleos	90.43
3tml_A	288	2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid,	90.43
3igs_A	232	N-acetylmannosamine-6-phosphate 2-epimerase 2; ene	90.39
3tsm_A	272	IGPS, indole-3-glycerol phosphate synthase; struct	90.37
3gk0_A	278	PNP synthase, pyridoxine 5'-phosphate synthase; de	90.36
3ngj_A	239	Deoxyribose-phosphate aldolase; lyase, structural	90.3
2hsa_B	402	12-oxophytodienoate reductase 3; alpha beta 8 barr	90.25
3i4e_A	439	Isocitrate lyase; structural genomics, seattle str	90.18
3iix_A	348	Biotin synthetase, putative; adoMet radical, SAM r	90.11
2qw5_A	335	Xylose isomerase-like TIM barrel; putative sugar p	90.08
2p10_A	286	MLL9387 protein; putative phosphonopyruvate hydrol	90.02
3cny_A	301	Inositol catabolism protein IOLE; xylose isomerase	90.01
3dz1_A	313	Dihydrodipicolinate synthase; lysine biosynthesis,	89.87
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	89.81
3fkr_A	309	L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f	89.8
2hjp_A	290	Phosphonopyruvate hydrolase; phosporus-Ca cleavage	89.8
3b8i_A	287	PA4872 oxaloacetate decarboxylase; alpha/beta barr	89.79
3noy_A	366	4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth;	89.78
4avf_A	490	Inosine-5'-monophosphate dehydrogenase; oxidoreduc	89.76
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	89.74
2r14_A	377	Morphinone reductase; H-tunnelling, flavoprotein,	89.71
3b4u_A	294	Dihydrodipicolinate synthase; structural genomics,	89.63
3inp_A	246	D-ribulose-phosphate 3-epimerase; IDP02542, isomer	89.61
3fa4_A	302	2,3-dimethylmalate lyase; alpha/beta barrel, helix	89.6
3s5o_A	307	4-hydroxy-2-oxoglutarate aldolase, mitochondrial;	89.54
1bxb_A	387	Xylose isomerase; xylose metabolism; 2.20A {Thermu	89.51
3m5v_A	301	DHDPS, dihydrodipicolinate synthase; TIM barrel, c	89.5
3m5v_A	301	DHDPS, dihydrodipicolinate synthase; TIM barrel, c	89.48
2gou_A	365	Oxidoreductase, FMN-binding; OLD yeallow enzyme, f	89.48
4fxs_A	496	Inosine-5'-monophosphate dehydrogenase; structural	89.45
2ze3_A	275	DFA0005; organic waste LEFT-OVER decomposition, al	89.4
3iar_A	367	Adenosine deaminase; purine metabolism structural	89.38
2wkj_A	303	N-acetylneuraminate lyase; directed evolution, sia	89.35
1viz_A	240	PCRB protein homolog; structural genomics, unknown	89.24
3aty_A	379	Tcoye, prostaglandin F2A synthase; alpha/beta barr	89.08
3ovp_A	228	Ribulose-phosphate 3-epimerase; iron binding, isom	89.06
3q58_A	229	N-acetylmannosamine-6-phosphate 2-epimerase; TIM b	88.98
3qfe_A	318	Putative dihydrodipicolinate synthase family PROT;	88.98
2a5h_A	416	L-lysine 2,3-aminomutase; radical SAM, four-iron-f	88.88
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	88.79
1u83_A	276	Phosphosulfolactate synthase; structural genomics,	88.76
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	88.75
2fiq_A	420	Putative tagatose 6-phosphate kinase 1; structural	88.71
4dpp_A	360	DHDPS 2, dihydrodipicolinate synthase 2, chloropla	88.71
2qiw_A	255	PEP phosphonomutase; structural genomics, joint ce	88.6
3qtg_A	461	Pyruvate kinase, PK; TIM barrel, glycolysis, trans	88.58
4gxw_A	380	Adenosine deaminase; amidohydrolase, COG1816, EFI,	88.54
3ktc_A	333	Xylose isomerase; putative sugar isomerase, struct	88.54
3si9_A	315	DHDPS, dihydrodipicolinate synthase; structural ge	88.52
2f6u_A	234	GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate sy	88.51
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	88.47
2bmb_A	545	Folic acid synthesis protein FOL1; folate biosynth	88.41
3daq_A	292	DHDPS, dihydrodipicolinate synthase; lysine biosyn	88.38
3hgj_A	349	Chromate reductase; TIM barrel, oxidoreductase; HE	88.29
1mzh_A	225	Deoxyribose-phosphate aldolase; alpha-beta barrel,	88.24
3ayv_A	254	Putative uncharacterized protein TTHB071; structur	88.09
2h9a_A	445	Carbon monoxide dehydrogenase corrinoid/iron- sulf	88.08
1qwg_A	251	PSL synthase;, (2R)-phospho-3-sulfolactate synthas	87.99
3tak_A	291	DHDPS, dihydrodipicolinate synthase; TIM barrel, l	87.99
3flu_A	297	DHDPS, dihydrodipicolinate synthase; TIM barrel, b	87.95
1y0e_A	223	Putative N-acetylmannosamine-6-phosphate 2-epimer;	87.94
3tdn_A	247	FLR symmetric alpha-beta TIM barrel; symmetric sup	87.93
4fo4_A	366	Inosine 5'-monophosphate dehydrogenase; structural	87.92
3u0h_A	281	Xylose isomerase domain protein; structural genomi	87.77
3pm6_A	306	Putative fructose-bisphosphate aldolase; structura	87.71
3qze_A	314	DHDPS, dihydrodipicolinate synthase; alpha beta ba	87.7
1ub3_A	220	Aldolase protein; schiff base, deoxyribose phospha	87.62
3qze_A	314	DHDPS, dihydrodipicolinate synthase; alpha beta ba	87.62
1yxy_A	234	Putative N-acetylmannosamine-6-phosphate 2-epimer;	87.6
2wkj_A	303	N-acetylneuraminate lyase; directed evolution, sia	87.59
1fob_A	334	Beta-1,4-galactanase; B/A barrel, glycosyl hydrola	87.58
3p6l_A	262	Sugar phosphate isomerase/epimerase; TIM barrel, s	87.56
1ur4_A	399	Galactanase; hydrolase, beta-1, glycoside hydrolas	87.55
3ndo_A	231	Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid	87.55
1yx1_A	264	Hypothetical protein PA2260; structural genomics,	87.51
3b4u_A	294	Dihydrodipicolinate synthase; structural genomics,	87.45
1xg4_A	295	Probable methylisocitrate lyase; 2-methylisocitrat	87.44
1vcv_A	226	Probable deoxyribose-phosphate aldolase; DERA, hyp	87.43
3e96_A	316	Dihydrodipicolinate synthase; structural genomics,	87.41
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	87.35
1s2w_A	295	Phosphoenolpyruvate phosphomutase; phosphonopyruva	87.28
3m0z_A	249	Putative aldolase; MCSG, PSI-2, structural genomic	87.19
1xky_A	301	Dihydrodipicolinate synthase; TIM barrel, , lysine	87.18
3txv_A	450	Probable tagatose 6-phosphate kinase; structural g	87.15
1s2w_A	295	Phosphoenolpyruvate phosphomutase; phosphonopyruva	87.14
1icp_A	376	OPR1, 12-oxophytodienoate reductase 1; beta-alpha-	87.07
3h5d_A	311	DHDPS, dihydrodipicolinate synthase; lysine biosyn	87.04
1ps9_A	671	2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel	86.99
1ceo_A	343	Cellulase CELC; glycosyl hydrolase, family A/5 of	86.96
3khj_A	361	Inosine-5-monophosphate dehydrogenase; enzyme-inhi	86.95
3na8_A	315	Putative dihydrodipicolinate synthetase; lyase; HE	86.95
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	86.91
3bo9_A	326	Putative nitroalkan dioxygenase; TM0800, structura	86.89
3na8_A	315	Putative dihydrodipicolinate synthetase; lyase; HE	86.84
3w01_A	235	Heptaprenylglyceryl phosphate synthase; biosynthes	86.68
3zwt_A	367	Dihydroorotate dehydrogenase (quinone), mitochond;	86.68
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	86.62
3usb_A	511	Inosine-5'-monophosphate dehydrogenase; structural	86.59
2r8w_A	332	AGR_C_1641P; APC7498, dihydrodipicolinate synthase	86.56
4hb7_A	270	Dihydropteroate synthase; transferase; 1.95A {Stap	86.48
1eye_A	280	DHPS 1, dihydropteroate synthase I; alpha-beta bar	86.35
1xm3_A	264	Thiazole biosynthesis protein THIG; structural gen	86.3
1qop_A	268	Tryptophan synthase alpha chain; lyase, carbon-oxy	86.26
1vc4_A	254	Indole-3-glycerol phosphate synthase; lyase, trypt	86.18
2zds_A	340	Putative DNA-binding protein; TIM-barrel fold, str	86.16
3d0c_A	314	Dihydrodipicolinate synthase; lysine biosynthesis,	86.03
1aj0_A	282	DHPS, dihydropteroate synthase; antibiotic, resist	86.02
1o66_A	275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	86.0
3m6y_A	275	4-hydroxy-2-oxoglutarate aldolase; structural geno	85.99
1xky_A	301	Dihydrodipicolinate synthase; TIM barrel, , lysine	85.99
2v9d_A	343	YAGE; dihydrodipicolinic acid synthase, N-acetyl n	85.97
3cpr_A	304	Dihydrodipicolinate synthetase; (beta/alpha)8-barr	85.89
3l21_A	304	DHDPS, dihydrodipicolinate synthase; DAPA, dimer,	85.88
3si9_A	315	DHDPS, dihydrodipicolinate synthase; structural ge	85.87
1qo2_A	241	Molecule: N-((5-phosphoribosyl)-formimino)-5-amino	85.78
1jcn_A	514	Inosine monophosphate dehydrogenase I; IMPD, IMPDH	85.76
2yxg_A	289	DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b	85.66
2ehh_A	294	DHDPS, dihydrodipicolinate synthase; structural ge	85.64
2nuw_A	288	2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a	85.64
2yxg_A	289	DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b	85.6
4gj1_A	243	1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) me	85.56
2r91_A	286	2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM	85.54
3a5f_A	291	Dihydrodipicolinate synthase; TIM barrel, enzyme,	85.42
3civ_A	343	Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.	85.32
1f6k_A	293	N-acetylneuraminate lyase; beta barrel; 1.60A {Hae	85.28
1tx2_A	297	DHPS, dihydropteroate synthase; folate biosynthesi	85.15
3l5l_A	363	Xenobiotic reductase A; TIM barrel, oxidoreductase	85.12
3lmz_A	257	Putative sugar isomerase; structural genomics, joi	85.1
2r8w_A	332	AGR_C_1641P; APC7498, dihydrodipicolinate synthase	84.96
1w3i_A	293	EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m	84.92
2cw6_A	298	Hydroxymethylglutaryl-COA lyase, mitochondrial; HM	84.81
1twd_A	256	Copper homeostasis protein CUTC; TIM-like protein,	84.74
2bdq_A	224	Copper homeostasis protein CUTC; alpha beta protei	84.72
3daq_A	292	DHDPS, dihydrodipicolinate synthase; lysine biosyn	84.7
3lg3_A	435	Isocitrate lyase; conserved, CD, proteomics eviden	84.59
3fst_A	304	5,10-methylenetetrahydrofolate reductase; TIM barr	84.58
3ajx_A	207	3-hexulose-6-phosphate synthase; HPS, OMPDC supraf	84.56
2ftp_A	302	Hydroxymethylglutaryl-COA lyase; structural genomi	84.52
3eb2_A	300	Putative dihydrodipicolinate synthetase; lysine bi	84.42
2r91_A	286	2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM	84.42
2qkf_A	280	3-deoxy-D-manno-octulosonic acid 8- phosphate SYN;	84.38
4eiv_A	297	Deoxyribose-phosphate aldolase; chemotherapy, brai	84.32
3o6c_A	260	PNP synthase, pyridoxine 5'-phosphate synthase; st	84.31
2v9d_A	343	YAGE; dihydrodipicolinic acid synthase, N-acetyl n	84.25
3l23_A	303	Sugar phosphate isomerase/epimerase; structural ge	84.22
3tva_A	290	Xylose isomerase domain protein TIM barrel; struct	84.17
2ojp_A	292	DHDPS, dihydrodipicolinate synthase; dimer, lysine	84.12
3lab_A	217	Putative KDPG (2-keto-3-deoxy-6-phosphogluconate)	84.1
1e0t_A	470	Pyruvate kinase, PK; phosphotransferase, glycolysi	84.05
1ydo_A	307	HMG-COA lyase; TIM-barrel protein, structural geno	83.91
1zfj_A	491	Inosine monophosphate dehydrogenase; IMPDH, CBS do	83.8
1o5k_A	306	DHDPS, dihydrodipicolinate synthase; TM1521, struc	83.8
3fkr_A	309	L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f	83.72
2eja_A	338	URO-D, UPD, uroporphyrinogen decarboxylase; dimer,	83.72
1gte_A	1025	Dihydropyrimidine dehydrogenase; electron transfer	83.61
3m47_A	228	Orotidine 5'-phosphate decarboxylase; orotidine 5'	83.58
1i60_A	278	IOLI protein; beta barrel, structural genomics, PS	83.55
1hjs_A	332	Beta-1,4-galactanase; 4-galactanases, family 53 gl	83.46
1o5k_A	306	DHDPS, dihydrodipicolinate synthase; TM1521, struc	83.4
3vii_A	487	Beta-glucosidase; cellulases, glycosyl hydrolase,	83.38
3vav_A	275	3-methyl-2-oxobutanoate hydroxymethyltransferase;	83.36
1xim_A	393	D-xylose isomerase; isomerase(intramolecular oxido	83.34
3d0c_A	314	Dihydrodipicolinate synthase; lysine biosynthesis,	83.31
1jub_A	311	Dihydroorotate dehydrogenase A; homodimer, alpha-b	83.31
3t7v_A	350	Methylornithine synthase PYLB; TIM-barrel fold, mu	83.29
3kru_A	343	NADH:flavin oxidoreductase/NADH oxidase; homotetra	83.28
3p6l_A	262	Sugar phosphate isomerase/epimerase; TIM barrel, s	83.25
4djd_C	446	C/Fe-SP, corrinoid/iron-sulfur protein large subun	83.19
1wa3_A	205	2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG,	83.05
2hsa_B	402	12-oxophytodienoate reductase 3; alpha beta 8 barr	82.92
2rfg_A	297	Dihydrodipicolinate synthase; beta barrel, amino-a	82.91
3b8i_A	287	PA4872 oxaloacetate decarboxylase; alpha/beta barr	82.69
2y7e_A	282	3-keto-5-aminohexanoate cleavage enzyme; lyase, al	82.69
2vc6_A	292	MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar	82.64
3eb2_A	300	Putative dihydrodipicolinate synthetase; lysine bi	82.63
4e38_A	232	Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho	82.5
1tv8_A	340	MOAA, molybdenum cofactor biosynthesis protein A;	82.4
2ocz_A	231	3-dehydroquinate dehydratase; structural genomics,	82.24
3ffs_A	400	Inosine-5-monophosphate dehydrogenase; beta-alpha	82.2
1vrd_A	494	Inosine-5'-monophosphate dehydrogenase; TM1347, st	82.14
1pv8_A	330	Delta-aminolevulinic acid dehydratase; porphobilin	82.09
3e96_A	316	Dihydrodipicolinate synthase; structural genomics,	81.97
2ehh_A	294	DHDPS, dihydrodipicolinate synthase; structural ge	81.97
3cpr_A	304	Dihydrodipicolinate synthetase; (beta/alpha)8-barr	81.93
2rfg_A	297	Dihydrodipicolinate synthase; beta barrel, amino-a	81.81
3b0p_A	350	TRNA-dihydrouridine synthase; TIM barrel, oxidored	81.8
3gnh_A	403	L-lysine, L-arginine carboxypeptidase CC2672; N-me	81.73
3a5f_A	291	Dihydrodipicolinate synthase; TIM barrel, enzyme,	81.72
2g0w_A	296	LMO2234 protein; putative sugar isomerase, structu	81.67
3r2g_A	361	Inosine 5'-monophosphate dehydrogenase; structural	81.65
1twd_A	256	Copper homeostasis protein CUTC; TIM-like protein,	81.63
3gg8_A	511	Pyruvate kinase; malaria, genomics, proteomics, gl	81.61
3apt_A	310	Methylenetetrahydrofolate reductase; TIM barrel, o	81.49
2yx0_A	342	Radical SAM enzyme; predicted tRNA modification en	81.45
3gd6_A	391	Muconate cycloisomerase; structural genomics, NYSG	81.41
4ab4_A	362	Xenobiotic reductase B; oxidoreductase, OLD yellow	81.41
2pgw_A	384	Muconate cycloisomerase; enolase superfamily, octa	81.39
3vzx_A	228	Heptaprenylglyceryl phosphate synthase; biosynthes	81.36
2nuw_A	288	2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a	81.23
4ay7_A	348	Methylcobalamin\: coenzyme M methyltransferase; TI	81.19
2x7v_A	287	Probable endonuclease 4; DNA repair protein, metal	81.09
3obe_A	305	Sugar phosphate isomerase/epimerase; structural ge	81.04
2qr6_A	393	IMP dehydrogenase/GMP reductase; NP_599840.1, G re	81.02
3khd_A	520	Pyruvate kinase; malaria, structural genomics, str	80.75
3vni_A	294	Xylose isomerase domain protein TIM barrel; D-psic	80.63
3f5l_A	481	Beta-glucosidase; beta-alpha-barrels, glycosidase,	80.61
3bo9_A	326	Putative nitroalkan dioxygenase; TM0800, structura	80.53
1f6k_A	293	N-acetylneuraminate lyase; beta barrel; 1.60A {Hae	80.42
1gnx_A	479	Beta-glucosidase; hydrolase, glycosyltransferase,	80.4
1r3s_A	367	URO-D, uroporphyrinogen decarboxylase, UPD; uropor	80.4
2zad_A	345	Muconate cycloisomerase; muconate lactonizing enzy	80.39
3gka_A	361	N-ethylmaleimide reductase; decode biostructures,	80.37
3qfe_A	318	Putative dihydrodipicolinate synthase family PROT;	80.18

>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}

Probab=100.00  E-value=4e-74  Score=565.74  Aligned_cols=299  Identities=44%  Similarity=0.742  Sum_probs=289.9

Q ss_pred             CCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC
Q 015894           94 VPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP  173 (398)
Q Consensus        94 ~p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~  173 (398)
                      ||++|+|+|||||||+|+++..|++++|++|++.|+++||+.||+|+|++|+++|++.|.+++++.+++.+++++++|++
T Consensus         3 ~~~~v~i~DtTlRDG~Q~~~~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~l~~   82 (307)
T 1ydo_A            3 YPKKVTIKEVGPRDGLQNEPVWIATEDKITWINQLSRTGLSYIEITSFVHPKWIPALRDAIDVAKGIDREKGVTYAALVP   82 (307)
T ss_dssp             CCSBCEEEECHHHHTGGGSSSCCCHHHHHHHHHHHHTTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCTTCEEEEECC
T ss_pred             CCCceEEEECCCCCCcCCCCCCCCHHHHHHHHHHHHHcCCCEEEECCCcCcccccccCCHHHHHHHhhhcCCCeEEEEeC
Confidence            78899999999999999999999999999999999999999999999999999999999998888887668999999999


Q ss_pred             CHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHH
Q 015894          174 NLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYV  253 (398)
Q Consensus       174 n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~  253 (398)
                      |.+|+++++++|++.|++|.++||.|.+.|+|+|++++++.+.+++++||++|++|+++++++|+||+.++++++++.++
T Consensus        83 ~~~~i~~a~~~g~~~v~i~~~~sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~v~~~i~~~~~~~~~~~~~~~~~~~~  162 (307)
T 1ydo_A           83 NQRGLENALEGGINEACVFMSASETHNRKNINKSTSESLHILKQVNNDAQKANLTTRAYLSTVFGCPYEKDVPIEQVIRL  162 (307)
T ss_dssp             SHHHHHHHHHHTCSEEEEEEESSHHHHHTTTCSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHHH
T ss_pred             CHHhHHHHHhCCcCEEEEEeecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEecCCcCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCC
Q 015894          254 SKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPY  333 (398)
Q Consensus       254 a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~  333 (398)
                      ++++.++|+++|+|+||+|.++|.+++++++.+++++|+++|++|+|||+|||+||+++|+++||++||+|++|||||||
T Consensus       163 ~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~l~~H~Hnd~Gla~AN~laAv~aGa~~vd~tv~GlGecp~  242 (307)
T 1ydo_A          163 SEALFEFGISELSLGDTIGAANPAQVETVLEALLARFPANQIALHFHDTRGTALANMVTALQMGITVFDGSAGGLGGCPY  242 (307)
T ss_dssp             HHHHHHHTCSCEEEECSSCCCCHHHHHHHHHHHHTTSCGGGEEEECBGGGSCHHHHHHHHHHHTCCEEEEBGGGCCEETT
T ss_pred             HHHHHhcCCCEEEEcCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCchHHHHHHHHHHhCCCEEEEcccccCCCCC
Confidence            99999999999999999999999999999999999999889999999999999999999999999999999999999999


Q ss_pred             CCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCCCCCCCcccccccccc
Q 015894          334 AKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTST  392 (398)
Q Consensus       334 a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~f~  392 (398)
                      ||||+||++||+|+++|+.+|+++++|+++|.++++++++.+|+++|++.|.+|.....
T Consensus       243 a~graGN~~~E~lv~~L~~~g~~t~idl~~L~~~~~~v~~~~~~~~~~~~~~~~~~~~~  301 (307)
T 1ydo_A          243 APGSSGNAATEDIVYMLEQMDIKTNVKLEKLLSAAKWIEEKMGKPLPSRNLQVFKSSLE  301 (307)
T ss_dssp             EEEEECBCBHHHHHHHHHHTTCBCCCCHHHHHHHHHHHHHHHTSCCCCHHHHHHTC---
T ss_pred             CCCCCCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHCCCCchhhHHHHHHhhh
Confidence            99999999999999999999999999999999999999999999999999999988766

>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*

Probab=100.00  E-value=1.3e-71  Score=545.30  Aligned_cols=297  Identities=64%  Similarity=1.045  Sum_probs=289.0

Q ss_pred             CCCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe
Q 015894           93 RVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT  172 (398)
Q Consensus        93 ~~p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~  172 (398)
                      +||++|+|+|||||||+|+++..|++++|++|++.|+++||+.||+|+|++|+++|++.|.+++++.+++.+++++.+++
T Consensus         1 ~~~~~v~i~D~tlRDG~Q~~~~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~d~~~~~~~~~~~~~~~~~~l~   80 (298)
T 2cw6_A            1 TLPKRVKIVEVGPRDGLQNEKNIVSTPVKIKLIDMLSEAGLSVIETTSFVSPKWVPQMGDHTEVLKGIQKFPGINYPVLT   80 (298)
T ss_dssp             CCCSBCEEEECTTTHHHHTCSSCCCHHHHHHHHHHHHHTTCSEECCEECCCTTTCGGGTTHHHHHHHSCCCTTCBCCEEC
T ss_pred             CCCCceEEEECCCCcccCCCCCCCCHHHHHHHHHHHHHcCcCEEEECCCcCcccccccCCHHHHHHHHhhCCCCEEEEEc
Confidence            47889999999999999999999999999999999999999999999999999999999999888888877889999999


Q ss_pred             CCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH
Q 015894          173 PNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAY  252 (398)
Q Consensus       173 ~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~  252 (398)
                      +|.+++++++++|++.|+++.++||.|.+.|++++++++++.+.+++++||++|+.|+++++++|+||+.++++++++.+
T Consensus        81 ~~~~~i~~a~~ag~~~v~i~~~~sd~~~~~~~~~~~~e~l~~~~~~i~~a~~~G~~v~~~l~~~~~~~~~~~~~~~~~~~  160 (298)
T 2cw6_A           81 PNLKGFEAAVAAGAKEVVIFGAASELFTKKNINCSIEESFQRFDAILKAAQSANISVRGYVSCALGCPYEGKISPAKVAE  160 (298)
T ss_dssp             CSHHHHHHHHHTTCSEEEEEEESCHHHHHHHHSCCHHHHHHHHHHHHHHHHHTTCEEEEEEETTTCBTTTBSCCHHHHHH
T ss_pred             CCHHhHHHHHHCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCC
Q 015894          253 VSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCP  332 (398)
Q Consensus       253 ~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp  332 (398)
                      +++++.++|+++|+|+||+|.++|.+++++++.+++++|+++|++|+|||+|||+||+++|+++||++||+|++|+||||
T Consensus       161 ~~~~~~~~Ga~~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~i~~H~Hn~~Gla~An~laA~~aGa~~vd~tv~GlG~cp  240 (298)
T 2cw6_A          161 VTKKFYSMGCYEISLGDTIGVGTPGIMKDMLSAVMQEVPLAALAVHCHDTYGQALANTLMALQMGVSVVDSSVAGLGGCP  240 (298)
T ss_dssp             HHHHHHHTTCSEEEEEETTSCCCHHHHHHHHHHHHHHSCGGGEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBTTSCCCCT
T ss_pred             HHHHHHHcCCCEEEecCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCCchHHHHHHHHHHhCCCEEEeecccccCCC
Confidence            99999999999999999999999999999999999999988999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCCCCCCCccccccc
Q 015894          333 YAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSK  389 (398)
Q Consensus       333 ~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~  389 (398)
                      |||||+||++||+++++|+.+|+++++|+++|.++++++++.+|+++|+++|.+|.+
T Consensus       241 ~a~g~aGN~~~E~lv~~l~~~g~~~~idl~~l~~~~~~~~~~~~~~~~~~~~~~~~~  297 (298)
T 2cw6_A          241 YAQGASGNLATEDLVYMLEGLGIHTGVNLQKLLEAGNFICQALNRKTSSKVAQATCK  297 (298)
T ss_dssp             TSCSSCCBCBHHHHHHHHHHHTCBCCCCHHHHHHHHHHHHHHTTCCCCCHHHHHHC-
T ss_pred             CCCCCcCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHCCCCchhhhhhhcc
Confidence            999999999999999999999999999999999999999999999999999999864

>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}

Probab=100.00  E-value=1.7e-70  Score=538.52  Aligned_cols=295  Identities=57%  Similarity=0.956  Sum_probs=286.7

Q ss_pred             CCCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe
Q 015894           93 RVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT  172 (398)
Q Consensus        93 ~~p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~  172 (398)
                      +||++|+|+|||||||+|++++.|++++|++|++.|+++|+++||+|+|++|+++|++.|.+++++.+.+.+++++++|+
T Consensus         4 ~~~~~v~i~D~tlRDG~Q~~~~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l~   83 (302)
T 2ftp_A            4 NLPKKVRLVEVGPRDGLQNEKQPIEVADKIRLVDDLSAAGLDYIEVGSFVSPKWVPQMAGSAEVFAGIRQRPGVTYAALA   83 (302)
T ss_dssp             CCCSBCEEEECTTTHHHHTSSSCCCHHHHHHHHHHHHHTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCTTSEEEEEC
T ss_pred             CCCCCcEEEeCCCCCCccCCCCCCCHHHHHHHHHHHHHcCcCEEEECCCcCccccccccCHHHHHHHhhhcCCCEEEEEe
Confidence            37889999999999999999999999999999999999999999999999999999999998887777766789999999


Q ss_pred             CCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH
Q 015894          173 PNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAY  252 (398)
Q Consensus       173 ~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~  252 (398)
                      +|.+++++++++|++.|++|+++||.|.+.|+|++++++++.+++++++||++|+.|+++|+++|+||+.++++++++.+
T Consensus        84 ~~~~~i~~a~~aG~~~v~i~~~~s~~~~~~~~~~s~ee~l~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~  163 (302)
T 2ftp_A           84 PNLKGFEAALESGVKEVAVFAAASEAFSQRNINCSIKDSLERFVPVLEAARQHQVRVRGYISCVLGCPYDGDVDPRQVAW  163 (302)
T ss_dssp             CSHHHHHHHHHTTCCEEEEEEESCHHHHHHHHSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCBTTTBCCCHHHHHH
T ss_pred             CCHHHHHHHHhCCcCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCeEEEEEEEEeeCCcCCCCCHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCC
Q 015894          253 VSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCP  332 (398)
Q Consensus       253 ~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp  332 (398)
                      +++.+.++|+++|+|+||.|.++|.+++++++.+++++|+++|++|+|||+|||+||+++|+++||++||+|++||||||
T Consensus       164 ~~~~~~~~G~d~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~An~laAv~aGa~~vd~tv~GlG~cp  243 (302)
T 2ftp_A          164 VARELQQMGCYEVSLGDTIGVGTAGATRRLIEAVASEVPRERLAGHFHDTYGQALANIYASLLEGIAVFDSSVAGLGGCP  243 (302)
T ss_dssp             HHHHHHHTTCSEEEEEESSSCCCHHHHHHHHHHHTTTSCGGGEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCCBCG
T ss_pred             HHHHHHHcCCCEEEEeCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEeCCCccHHHHHHHHHHHhCCCEEEecccccCCCC
Confidence            99999999999999999999999999999999999999888999999999999999999999999999999999999999


Q ss_pred             CCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCCCCCCCccccc
Q 015894          333 YAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIAL  387 (398)
Q Consensus       333 ~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG  387 (398)
                      |||||+||++||+|+++|+.+|+++++|+++|.++++++++.+|+++|+++|.++
T Consensus       244 ~a~gr~GN~~~E~lv~~l~~~g~~~~idl~~l~~~~~~~~~~~~~~~~~~~~~~~  298 (302)
T 2ftp_A          244 YAKGATGNVASEDVLYLLNGLEIHTGVDMHALVDAGQRICAVLGKSNGSRAAKAL  298 (302)
T ss_dssp             GGTTCBCBCBHHHHHHHHHHTTCBCCCCHHHHHHHHHHHHHHHCCCCSCHHHHHH
T ss_pred             CCCCCCCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCCccchhhc
Confidence            9999999999999999999999999999999999999999999999999999874

>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis}

Probab=100.00  E-value=8.6e-68  Score=532.45  Aligned_cols=287  Identities=21%  Similarity=0.290  Sum_probs=266.1

Q ss_pred             CCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC
Q 015894           94 VPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP  173 (398)
Q Consensus        94 ~p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~  173 (398)
                      +|++|+|+|||||||+|+++..|++++|++|++.|+++||++||+|||++.   |  .|.+.+.+..+..+++++++|+|
T Consensus         9 ~~~~v~I~DtTLRDG~Q~~~~~~~~~~Kl~ia~~L~~~Gv~~IE~g~p~~~---~--~d~e~v~~i~~~~~~~~i~~l~r   83 (370)
T 3rmj_A            9 QTNRVIIFDTTLRDGEQSPGAAMTKEEKIRVARQLEKLGVDIIEAGFAAAS---P--GDFEAVNAIAKTITKSTVCSLSR   83 (370)
T ss_dssp             -CCBCEEEECCCCCCTTSTTCCCCHHHHHHHHHHHHHHTCSEEEEEEGGGC---H--HHHHHHHHHHTTCSSSEEEEEEE
T ss_pred             CCCCEEEEECCCCccccCCCCCcCHHHHHHHHHHHHHcCCCEEEEeCCCCC---H--HHHHHHHHHHHhCCCCeEEEEec
Confidence            588999999999999999999999999999999999999999999998753   2  35666666556678999999997


Q ss_pred             -CHhhHHHHHH----cCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHH
Q 015894          174 -NLKGFEAAVA----AGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPS  248 (398)
Q Consensus       174 -n~~~ie~a~~----~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~  248 (398)
                       +.+|++++++    +|++.|++|+++||.|.+.|+|+|++++++.+.+++++||++|..|.      |+||++++++++
T Consensus        84 ~~~~di~~a~~al~~ag~~~v~if~~~Sd~h~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~------~~~ed~~r~~~~  157 (370)
T 3rmj_A           84 AIERDIRQAGEAVAPAPKKRIHTFIATSPIHMEYKLKMKPKQVIEAAVKAVKIAREYTDDVE------FSCEDALRSEID  157 (370)
T ss_dssp             SSHHHHHHHHHHHTTSSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHTTTCSCEE------EEEETGGGSCHH
T ss_pred             CCHHHHHHHHHHHhhCCCCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCEEE------EecCCCCccCHH
Confidence             7899999988    89999999999999999999999999999999999999999999876      678899999999


Q ss_pred             HHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCC---CeEEEEeCCccchHHHHHHHHHHhCCCEEeecc
Q 015894          249 KVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPV---DKLAVHFHDTYGQALSNILASLQMGISTVDSSV  325 (398)
Q Consensus       249 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~---~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv  325 (398)
                      ++.++++++.++|+++|+||||+|+++|.+++++|+.+++++|+   ++|++|+|||+|||+||+++|+++||++||+|+
T Consensus       158 ~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~~~~l~~H~Hnd~GlAvAN~laAv~aGa~~vd~tv  237 (370)
T 3rmj_A          158 FLAEICGAVIEAGATTINIPDTVGYSIPYKTEEFFRELIAKTPNGGKVVWSAHCHNDLGLAVANSLAALKGGARQVECTV  237 (370)
T ss_dssp             HHHHHHHHHHHHTCCEEEEECSSSCCCHHHHHHHHHHHHHHSTTGGGSEEEEECBCTTSCHHHHHHHHHHTTCCEEEEBG
T ss_pred             HHHHHHHHHHHcCCCEEEecCccCCcCHHHHHHHHHHHHHhCCCcCceEEEEEeCCCCChHHHHHHHHHHhCCCEEEEec
Confidence            99999999999999999999999999999999999999999986   799999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCccHHHHHHHHHh----CCCCCccChHHHHHHHHHHHHHhCCCCCCCcccccccccccccCCC
Q 015894          326 SGLGGCPYAKGASGNVATEDVVYMLNG----LGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANASKL  398 (398)
Q Consensus       326 ~GlGecp~a~graGNa~lE~vv~~L~~----~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~f~~~~s~~  398 (398)
                      +||||      |+||++||+|+++|+.    +|+++++|+++|.++++++++++|+++|+++|+||+++|+ |+|||
T Consensus       238 ~GlGe------raGN~~lE~vv~~L~~~~~~~g~~tgidl~~L~~~s~~v~~~~g~~~~~~~p~vG~~aF~-h~sGi  307 (370)
T 3rmj_A          238 NGLGE------RAGNASVEEIVMALKVRHDLFGLETGIDTTQIVPSSKLVSTITGYPVQPNKAIVGANAFS-HESGI  307 (370)
T ss_dssp             GGCSS------TTCBCBHHHHHHHHHHTHHHHCCBCCCCGGGHHHHHHHHHHHHTCCCCSSCTTTSTTTTC------
T ss_pred             cccCc------ccccccHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCccchhHHH-hcccc
Confidence            99999      9999999999999974    5999999999999999999999999999999999999999 99997

>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406}

Probab=100.00  E-value=4.7e-68  Score=526.33  Aligned_cols=288  Identities=23%  Similarity=0.271  Sum_probs=238.6

Q ss_pred             CCCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe
Q 015894           93 RVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT  172 (398)
Q Consensus        93 ~~p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~  172 (398)
                      +||++|+|+|||||||+|+++..|++++|++|++.|+++||+.||+|||...   |  .|.+.+.+..+..+++++++|+
T Consensus         2 ~~~~~v~I~DttlRDG~Q~~~~~~~~~~Kl~ia~~L~~~Gv~~IE~g~p~~~---~--~d~e~v~~i~~~~~~~~i~~l~   76 (325)
T 3eeg_A            2 SLGKRIFVFDTTLRDGEQVPGCQLNTEEKIIVAKALDELGVDVIEAGFPVSS---P--GDFNSVVEITKAVTRPTICALT   76 (325)
T ss_dssp             --CEECEEEECGGGCC-------CCTTHHHHHHHHHHHHTCSEEEEECTTSC---H--HHHHHHHHHHHHCCSSEEEEEC
T ss_pred             CCCCceEEEECCCCCcccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC---H--hHHHHHHHHHHhCCCCEEEEee
Confidence            4788999999999999999999999999999999999999999999998632   2  2444444444567899999999


Q ss_pred             C-CHhhHHHHHHc----CCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCH
Q 015894          173 P-NLKGFEAAVAA----GAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPP  247 (398)
Q Consensus       173 ~-n~~~ie~a~~~----Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~  247 (398)
                      | +.+|+++++++    |+++|++|+++||.|.+.|+|+|++++++.+.+++++||++|+.|.      |+||+.+++++
T Consensus        77 r~~~~~i~~a~~al~~ag~~~v~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~a~~~g~~v~------f~~~d~~~~~~  150 (325)
T 3eeg_A           77 RAKEADINIAGEALRFAKRSRIHTGIGSSDIHIEHKLRSTRENILEMAVAAVKQAKKVVHEVE------FFCEDAGRADQ  150 (325)
T ss_dssp             CSCHHHHHHHHHHHTTCSSEEEEEEEECSHHHHC----CCCTTGGGTTHHHHHHHHTTSSEEE------EEEETGGGSCH
T ss_pred             cCCHHHHHHHHHhhcccCCCEEEEEecccHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEE------EEccccccchH
Confidence            7 67899999988    9999999999999999999999999999999999999999999875      67899999999


Q ss_pred             HHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCC---CeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894          248 SKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPV---DKLAVHFHDTYGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       248 ~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~---~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S  324 (398)
                      +++.++++++.++|+++|+|+||+|+++|.+++++++.+++++|+   ++|++|+|||+|||+||+++|+++||++||+|
T Consensus       151 ~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~~~i~~H~Hnd~GlA~AN~laA~~aGa~~vd~t  230 (325)
T 3eeg_A          151 AFLARMVEAVIEAGADVVNIPDTTGYMLPWQYGERIKYLMDNVSNIDKAILSAHCHNDLGLATANSLAALQNGARQVECT  230 (325)
T ss_dssp             HHHHHHHHHHHHHTCSEEECCBSSSCCCHHHHHHHHHHHHHHCSCGGGSEEEECBCCTTSCHHHHHHHHHHHTCCEEEEB
T ss_pred             HHHHHHHHHHHhcCCCEEEecCccCCcCHHHHHHHHHHHHHhCCCCCceEEEEEeCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence            999999999999999999999999999999999999999999986   79999999999999999999999999999999


Q ss_pred             cccCCCCCCCCCCCCCccHHHHHHHHHh----CCCCCccChHHHHHHHHHHHHHhCCCCCCCcccccccccccccCCC
Q 015894          325 VSGLGGCPYAKGASGNVATEDVVYMLNG----LGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANASKL  398 (398)
Q Consensus       325 v~GlGecp~a~graGNa~lE~vv~~L~~----~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~f~~~~s~~  398 (398)
                      ++||||      |+||++||+|+++|+.    +|+++++|+++|.++++++++++|+++|+++|+||+++|+ |+|||
T Consensus       231 v~GlGe------r~GN~~lE~vv~~L~~~~~~~g~~tgidl~~L~~~s~~v~~~~g~~~~~~~p~vG~~af~-h~sGi  301 (325)
T 3eeg_A          231 INGIGE------RAGNTALEEVVMAMECHKETLGLETGINHKKLVPISHLVSTLMRMQVQSNKAIVGRNAFA-HSSGI  301 (325)
T ss_dssp             GGGCCS------TTCCCBHHHHHHHHHHTHHHHCEECCCCGGGHHHHHHHHHHHTTC---------------------
T ss_pred             cccccc------cccchhHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCccchhHHH-Hhccc
Confidence            999999      9999999999999984    6999999999999999999999999999999999999999 99996

>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}

Probab=100.00  E-value=2.1e-66  Score=507.19  Aligned_cols=290  Identities=53%  Similarity=0.841  Sum_probs=276.3

Q ss_pred             CCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC
Q 015894           94 VPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP  173 (398)
Q Consensus        94 ~p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~  173 (398)
                      ||++|+|+|||||||+|+++..|++++|++|++.|+++|++.||+|+|++++|+|+|+|.+++++.+++.++++++++++
T Consensus         1 ~~~~v~i~d~tlRDG~Q~~~~~~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~~~p~~~~~~e~~~~i~~~~~~~v~~l~~   80 (295)
T 1ydn_A            1 MAEHVEIVEMAARDGLQNEKRFVPTADKIALINRLSDCGYARIEATSFVSPKWVPQLADSREVMAGIRRADGVRYSVLVP   80 (295)
T ss_dssp             -CCBCEEEECTTTHHHHTSSSCCCHHHHHHHHHHHTTTTCSEEEEEECSCTTTCGGGTTHHHHHHHSCCCSSSEEEEECS
T ss_pred             CCCceEEEECCCCccccCCCCCcCHHHHHHHHHHHHHcCcCEEEEccCcCccccccccCHHHHHHHHHhCCCCEEEEEeC
Confidence            57899999999999999999999999999999999999999999999999999999999998888887667899999999


Q ss_pred             CHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHH
Q 015894          174 NLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYV  253 (398)
Q Consensus       174 n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~  253 (398)
                      |.+++++++++|++.|++++++||.|.+.|++++.+++++++++++++||+.|+.|+++|+++||||+.++++++++.++
T Consensus        81 n~~~i~~a~~~G~~~V~i~~~~S~~h~~~~~~~~~~e~~~~~~~~v~~a~~~G~~V~~~l~~~~~~e~~~~~~~~~~~~~  160 (295)
T 1ydn_A           81 NMKGYEAAAAAHADEIAVFISASEGFSKANINCTIAESIERLSPVIGAAINDGLAIRGYVSCVVECPYDGPVTPQAVASV  160 (295)
T ss_dssp             SHHHHHHHHHTTCSEEEEEEESCHHHHHHHTSSCHHHHHHHHHHHHHHHHHTTCEEEEEEECSSEETTTEECCHHHHHHH
T ss_pred             CHHHHHHHHHCCCCEEEEEEecCHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCeEEEEEEEEecCCcCCCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCC
Q 015894          254 SKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPY  333 (398)
Q Consensus       254 a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~  333 (398)
                      ++.+.++|+++|+|+||.|.++|.++.++++.+++.+|.++|++|+|||+|+|+||+++|+++||+.||+|++|||||||
T Consensus       161 ~~~~~~~G~d~i~l~Dt~G~~~P~~~~~lv~~l~~~~~~~~l~~H~Hn~~Gla~an~l~Ai~aG~~~vd~sv~GlG~cp~  240 (295)
T 1ydn_A          161 TEQLFSLGCHEVSLGDTIGRGTPDTVAAMLDAVLAIAPAHSLAGHYHDTGGRALDNIRVSLEKGLRVFDASVGGLGGCPF  240 (295)
T ss_dssp             HHHHHHHTCSEEEEEETTSCCCHHHHHHHHHHHHTTSCGGGEEEEEBCTTSCHHHHHHHHHHHTCCEEEEBTTCCSCBTT
T ss_pred             HHHHHhcCCCEEEecCCCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCcchHHHHHHHHHHhCCCEEEeccccCCCCCC
Confidence            99999999999999999999999999999999999998778999999999999999999999999999999999999999


Q ss_pred             CCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCCCCCCCc
Q 015894          334 AKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKT  383 (398)
Q Consensus       334 a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~  383 (398)
                      ||||+||++||+++.+|+.+|+++++|+++|.+++++++++.+...+..+
T Consensus       241 a~g~~GN~~~e~lv~~l~~~g~~~~id~~~l~~~~~~~~~~~~~~~~~~~  290 (295)
T 1ydn_A          241 APGAKGNVDTVAVVEMLHEMGFETGLDLDRLRSAGLFTQALRQDKAALEH  290 (295)
T ss_dssp             BTTSCCBCBHHHHHHHHHHTTCBCCCCHHHHHHHHHHHHHHHCC------
T ss_pred             CCCCcCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHCCCCCccc
Confidence            99999999999999999999999999999999999999999999887543

>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A*

Probab=100.00  E-value=5.9e-66  Score=513.66  Aligned_cols=289  Identities=20%  Similarity=0.233  Sum_probs=264.3

Q ss_pred             CCCccEEEeCCCcccCCCCCCCCCHHHHHHHHH-HHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-------hccC
Q 015894           94 VPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIK-LLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-------NVEG  165 (398)
Q Consensus        94 ~p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~-~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-------~~~~  165 (398)
                      +|++|+|+|||||||+|++++.|++++|++|++ .|+++||+.||+|+|++.+      +.++.++.++       .+++
T Consensus        16 ~~~~v~I~DtTlRDG~Q~~~~~~~~~~k~~i~~~~L~~~Gv~~IE~g~~~~~~------~~~~~v~~~~~~~~~~~~~~~   89 (337)
T 3ble_A           16 VETRLEILDVTLRDGEQTRGVSFSTSEKLNIAKFLLQKLNVDRVEIASARVSK------GELETVQKIMEWAATEQLTER   89 (337)
T ss_dssp             ---CCEEEECHHHHHTTSTTCCCCHHHHHHHHHHHHHTTCCSEEEEEETTSCT------THHHHHHHHHHHHHHTTCGGG
T ss_pred             CCCceEEEECCCCCCCCCCCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCCCCh------hHHHHHHHHHhhhhhhccCCC
Confidence            788999999999999999999999999999999 9999999999999998521      2223333333       3578


Q ss_pred             CcEEEEeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCC
Q 015894          166 ARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMV  245 (398)
Q Consensus       166 ~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~  245 (398)
                      +++++|+++.+++++++++|++.|++|+++||.|.+.++|+|+++.++.+.+++++||++|++|++++++   |++.+++
T Consensus        90 ~~i~~l~~~~~~i~~a~~~g~~~v~i~~~~s~~~~~~~~~~s~~e~l~~~~~~v~~ak~~G~~v~~~~~~---~~~~~~~  166 (337)
T 3ble_A           90 IEILGFVDGNKTVDWIKDSGAKVLNLLTKGSLHHLEKQLGKTPKEFFTDVSFVIEYAIKSGLKINVYLED---WSNGFRN  166 (337)
T ss_dssp             EEEEEESSTTHHHHHHHHHTCCEEEEEEECSHHHHHHHTCCCHHHHHHHHHHHHHHHHHTTCEEEEEEET---HHHHHHH
T ss_pred             CeEEEEccchhhHHHHHHCCCCEEEEEEecCHHHHHHHhCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEE---CCCCCcC
Confidence            8999999998899999999999999999999999999999999999999999999999999999977764   4457889


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeecc
Q 015894          246 PPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSV  325 (398)
Q Consensus       246 ~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv  325 (398)
                      +++++.++++++.++|+++|+|+||+|+++|.+++++++.+++++|+++|++|+|||+|||+||+++|+++||++||+|+
T Consensus       167 ~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~p~~~i~~H~Hnd~GlA~AN~laAv~aGa~~vd~tv  246 (337)
T 3ble_A          167 SPDYVKSLVEHLSKEHIERIFLPDTLGVLSPEETFQGVDSLIQKYPDIHFEFHGHNDYDLSVANSLQAIRAGVKGLHASI  246 (337)
T ss_dssp             CHHHHHHHHHHHHTSCCSEEEEECTTCCCCHHHHHHHHHHHHHHCTTSCEEEECBCTTSCHHHHHHHHHHTTCSEEEEBG
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEecCCCCcCHHHHHHHHHHHHHhcCCCeEEEEecCCcchHHHHHHHHHHhCCCEEEEec
Confidence            99999999999999999999999999999999999999999999988899999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCccHHHHHHHHHhC-CCCCccChHHHHHHHHHHHHHhCCCCCCCcccccccccccccCCC
Q 015894          326 SGLGGCPYAKGASGNVATEDVVYMLNGL-GVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANASKL  398 (398)
Q Consensus       326 ~GlGecp~a~graGNa~lE~vv~~L~~~-Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~f~~~~s~~  398 (398)
                      +||||      |+||++||+|+++|+.. |+++++|+++|.++++++++++|+++|+++|++|+++|+ |+|||
T Consensus       247 ~GlG~------~aGN~~~E~lv~~L~~~~g~~tgidl~~L~~~~~~v~~~~~~~~~~~~~~vg~~~f~-h~~Gi  313 (337)
T 3ble_A          247 NGLGE------RAGNTPLEALVTTIHDKSNSKTNINEIAITEASRLVEVFSGKRISANRPIVGEDVFT-QTAGV  313 (337)
T ss_dssp             GGCSS------TTCBCBHHHHHHHHHHHSSCCCCCCGGGHHHHHHHHHHHHCCCCCTTCTTTSTTTTC-C----
T ss_pred             ccccc------cccchhHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHHCCCCCCCccchhhhhhh-eeccc
Confidence            99999      99999999999999986 999999999999999999999999999999999999999 99986

>3ivs_A Homocitrate synthase, mitochondrial; TIM barrel, metalloprotein, transferase, claisen condensatio acid biosynthesis; 2.24A {Schizosaccharomyces pombe} PDB: 3ivt_A* 3ivu_A* 3mi3_A*

Probab=100.00  E-value=2.1e-63  Score=506.61  Aligned_cols=286  Identities=18%  Similarity=0.201  Sum_probs=246.6

Q ss_pred             CCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC
Q 015894           94 VPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP  173 (398)
Q Consensus        94 ~p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~  173 (398)
                      |+++|+|+|||||||+|.++..|++++|++|++.|+++||+.||+|+|.+   .|+  |.+.+....+...+.++.++++
T Consensus        36 ~~~~V~I~DtTLRDG~Q~~~~~~s~eeKl~Ia~~L~~~Gv~~IEvG~P~a---sp~--d~~~~~~i~~~~~~~~v~~~~r  110 (423)
T 3ivs_A           36 RVNNFSIIESTLREGEQFANAFFDTEKKIQIAKALDNFGVDYIELTSPVA---SEQ--SRQDCEAICKLGLKCKILTHIR  110 (423)
T ss_dssp             CTTSCEEEECTTTGGGGSTTCCCCHHHHHHHHHHHHHHTCSEEEECCTTS---CHH--HHHHHHHHHTSCCSSEEEEEEE
T ss_pred             CCCcEEEEECCCCCCCCCCCCCcCHHHHHHHHHHHHHcCCCEEEEeeccc---CHH--HHHHHHHHHhcCCCCEEEEeec
Confidence            56789999999999999999999999999999999999999999998653   344  2333333333333566666664


Q ss_pred             -CHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH
Q 015894          174 -NLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAY  252 (398)
Q Consensus       174 -n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~  252 (398)
                       +.+|+++++++|++.|++|+++||.|.+.++++|+++.++.+.+++++||++|+.|+++.+      +.++++++++.+
T Consensus       111 ~~~~di~~A~~aG~~~V~i~~s~Sd~~~~~~l~~s~~e~l~~~~~~v~~ak~~G~~V~~~~e------da~r~d~~~~~~  184 (423)
T 3ivs_A          111 CHMDDARVAVETGVDGVDVVIGTSQYLRKYSHGKDMTYIIDSATEVINFVKSKGIEVRFSSE------DSFRSDLVDLLS  184 (423)
T ss_dssp             SCHHHHHHHHHTTCSEEEEEEEC-------------CHHHHHHHHHHHHHHTTTCEEEEEEE------SGGGSCHHHHHH
T ss_pred             cChhhHHHHHHcCCCEEEEEeeccHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCCEEEEEEc------cCcCCCHHHHHH
Confidence             7899999999999999999999999999999999999999999999999999999985544      567899999999


Q ss_pred             HHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCC
Q 015894          253 VSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCP  332 (398)
Q Consensus       253 ~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp  332 (398)
                      +++++.++|+++|+|+||+|+++|.+++++++.++++.+ ++|++|+|||+|||+||+++|+++||++||+|++|+||  
T Consensus       185 v~~~~~~~Ga~~i~l~DTvG~~~P~~v~~lv~~l~~~~~-~~i~~H~Hnd~GlAvAN~laAv~aGa~~vd~ti~GlGE--  261 (423)
T 3ivs_A          185 LYKAVDKIGVNRVGIADTVGCATPRQVYDLIRTLRGVVS-CDIECHFHNDTGMAIANAYCALEAGATHIDTSILGIGE--  261 (423)
T ss_dssp             HHHHHHHHCCSEEEEEETTSCCCHHHHHHHHHHHHHHCS-SEEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSS--
T ss_pred             HHHHHHHhCCCccccCCccCcCCHHHHHHHHHHHHhhcC-CeEEEEECCCCchHHHHHHHHHHhCCCEEEEecccccC--
Confidence            999999999999999999999999999999999999875 68999999999999999999999999999999999999  


Q ss_pred             CCCCCCCCccHHHHHHHHHh---CCCCCccChHHHHHHHHHHHHHhCCCCCCCcccccccccccccCCC
Q 015894          333 YAKGASGNVATEDVVYMLNG---LGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANASKL  398 (398)
Q Consensus       333 ~a~graGNa~lE~vv~~L~~---~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~f~~~~s~~  398 (398)
                          |+||++||+|+++|..   +++++++|+++|.++++++++++|+++|+|+|+||+++|+ |+|||
T Consensus       262 ----RaGNa~Le~vv~~L~~~~~~~~~~~idl~~L~~is~~v~~~~~~~v~~~kpivG~~aFa-h~sGi  325 (423)
T 3ivs_A          262 ----RNGITPLGALLARMYVTDREYITHKYKLNQLRELENLVADAVEVQIPFNNYITGMCAFT-HKAGI  325 (423)
T ss_dssp             ----TTCBCBHHHHHHHHHHHCHHHHHHHSCGGGHHHHHHHHHHHTTCCCCTTCTTTSTTTTE-EECSG
T ss_pred             ----cccchhHHHHHHHHHhhcccCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCchhHhHHH-hhcch
Confidence                9999999999998864   3678999999999999999999999999999999999999 99996

>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A*

Probab=100.00  E-value=9.3e-62  Score=490.84  Aligned_cols=281  Identities=21%  Similarity=0.236  Sum_probs=248.4

Q ss_pred             ccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEEEeC-C
Q 015894           97 FVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPVLTP-N  174 (398)
Q Consensus        97 ~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~-n  174 (398)
                      +|+|+|||||||+|++++.|++++|++|++.|+++||+.||+|+|..   .|++  .+ ..+.++ ..+++++.++.| +
T Consensus         3 ~v~I~DtTLRDG~Q~~~~~~~~~~k~~ia~~L~~~Gv~~IE~g~p~~---~~~~--~~-~~~~i~~~~~~~~v~~~~r~~   76 (382)
T 2ztj_A            3 EWKIIDSTLREGEQFEKANFSTQDKVEIAKALDEFGIEYIEVTTPVA---SPQS--RK-DAEVLASLGLKAKVVTHIQCR   76 (382)
T ss_dssp             CCEEEEEEETGGGGSTTCCCCHHHHHHHHHHHHHHTCSEEEECCTTS---CHHH--HH-HHHHHHTSCCSSEEEEEEESC
T ss_pred             ceEEEECCCCcccCCCCCCcCHHHHHHHHHHHHHcCcCEEEEcCCcC---CHHH--HH-HHHHHHhcCCCcEEEEEcccC
Confidence            59999999999999999999999999999999999999999998653   3433  22 233344 345678888887 5


Q ss_pred             HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCC--CcEEEEEeeeecCCCCCCCCHHHHHH
Q 015894          175 LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELS--IPVRGYLSCVVGCPVEGMVPPSKVAY  252 (398)
Q Consensus       175 ~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G--~~v~~~l~~~fg~~~~~r~~~~~l~~  252 (398)
                      .+++++++++|++.|++|+++||.|.+ ++++|++++++.+.+++++||++|  +.|++++      ++.++++++++.+
T Consensus        77 ~~di~~a~~~g~~~v~i~~~~s~~~~~-~~~~s~~e~l~~~~~~v~~ak~~g~~~~v~~~~------ed~~~~~~~~~~~  149 (382)
T 2ztj_A           77 LDAAKVAVETGVQGIDLLFGTSKYLRA-PHGRDIPRIIEEAKEVIAYIREAAPHVEVRFSA------EDTFRSEEQDLLA  149 (382)
T ss_dssp             HHHHHHHHHTTCSEEEEEECC---------CCCHHHHHHHHHHHHHHHHHHCTTSEEEEEE------TTTTTSCHHHHHH
T ss_pred             hhhHHHHHHcCCCEEEEEeccCHHHHH-HhCCCHHHHHHHHHHHHHHHHHcCCCEEEEEEE------EeCCCCCHHHHHH
Confidence            789999999999999999999999999 999999999999999999999999  7776433      4677999999999


Q ss_pred             HHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhC-CCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCC
Q 015894          253 VSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAV-PVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGC  331 (398)
Q Consensus       253 ~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~-p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGec  331 (398)
                      +++++.++ +++|+|+||+|+++|.+++++|+.+++.+ |+++|++|+|||+|||+||+++|+++||++||+|++|||| 
T Consensus       150 ~~~~~~~~-a~~i~l~DT~G~~~P~~~~~lv~~l~~~~~~~~~i~~H~Hnd~GlAvAN~laAv~aGa~~vd~tv~GlGe-  227 (382)
T 2ztj_A          150 VYEAVAPY-VDRVGLADTVGVATPRQVYALVREVRRVVGPRVDIEFHGHNDTGCAIANAYEAIEAGATHVDTTILGIGE-  227 (382)
T ss_dssp             HHHHHGGG-CSEEEEEETTSCCCHHHHHHHHHHHHHHHTTTSEEEEEEBCTTSCHHHHHHHHHHTTCCEEEEBGGGCSS-
T ss_pred             HHHHHHHh-cCEEEecCCCCCCCHHHHHHHHHHHHHhcCCCCeEEEEeCCCccHHHHHHHHHHHhCCCEEEEccccccc-
Confidence            99999999 99999999999999999999999999976 6789999999999999999999999999999999999999 


Q ss_pred             CCCCCCCCCccHHHHHHHHHh---CCCCCccChHHHHHHHHHHHHHhCCCCCCCcccccccccccccCCC
Q 015894          332 PYAKGASGNVATEDVVYMLNG---LGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANASKL  398 (398)
Q Consensus       332 p~a~graGNa~lE~vv~~L~~---~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~f~~~~s~~  398 (398)
                           |+||++||+++++|+.   +|+++++|+++|.++++++++++|+++|+++|++|.++|+ |+|||
T Consensus       228 -----raGN~~lE~vv~~L~~~~~~g~~t~idl~~L~~~s~~v~~~~~~~~~~~~p~vG~~~f~-h~sGi  291 (382)
T 2ztj_A          228 -----RNGITPLGGFLARMYTLQPEYVRRKYKLEMLPELDRMVARMVGVEIPFNNYITGETAFS-HKAGM  291 (382)
T ss_dssp             -----TTCBCBHHHHHHHHHHHCHHHHHHHSCGGGHHHHHHHHHHHHTCCCCTTCTTTSTTTTE-ECCHH
T ss_pred             -----cccchhHHHHHHHHHhhcCCcccCCCCHHHHHHHHHHHHHHhCCCCCcCCCcCCcchhh-eeccc
Confidence                 9999999999999975   3588999999999999999999999999999999999999 99985

>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str}

Probab=100.00  E-value=9e-61  Score=467.94  Aligned_cols=272  Identities=21%  Similarity=0.244  Sum_probs=237.5

Q ss_pred             CccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCC-
Q 015894           96 GFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPN-  174 (398)
Q Consensus        96 ~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n-  174 (398)
                      ++|+|+|||||||+|+++..|++++|++|++.|+++||+.||+|+|.+.   |  .|.+.+.+..+..+++++++|+|+ 
T Consensus         4 ~~v~I~DttlRDG~Q~~~~~~~~~~K~~i~~~L~~~Gv~~IE~g~p~~~---~--~d~e~v~~i~~~~~~~~i~~l~~~~   78 (293)
T 3ewb_X            4 KKIQFFDTTLRDGEQTPGVNFDVKEKIQIALQLEKLGIDVIEAGFPISS---P--GDFECVKAIAKAIKHCSVTGLARCV   78 (293)
T ss_dssp             EEEEEEECTTTCCC-----CCCHHHHHHHHHHHHHHTCSEEEEECGGGC---H--HHHHHHHHHHHHCCSSEEEEEEESS
T ss_pred             CeeEEEECCCCCcCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC---c--cHHHHHHHHHHhcCCCEEEEEecCC
Confidence            3699999999999999999999999999999999999999999997642   2  355555555556789999999986 


Q ss_pred             HhhHHHHHH----cCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHH
Q 015894          175 LKGFEAAVA----AGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKV  250 (398)
Q Consensus       175 ~~~ie~a~~----~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l  250 (398)
                      .+|++++++    +|++.|++|+++||.|.+.|+|+|++++++.+.+++++||++|..|++      ++++.++++++++
T Consensus        79 ~~di~~a~~~~~~ag~~~v~i~~~~Sd~~~~~nl~~s~~e~l~~~~~~v~~a~~~g~~v~~------~~~d~~~~~~~~~  152 (293)
T 3ewb_X           79 EGDIDRAEEALKDAVSPQIHIFLATSDVHMEYKLKMSRAEVLASIKHHISYARQKFDVVQF------SPEDATRSDRAFL  152 (293)
T ss_dssp             HHHHHHHHHHHTTCSSEEEEEEEECSHHHHHHTTCCCHHHHHHHHHHHHHHHHTTCSCEEE------EEETGGGSCHHHH
T ss_pred             HHHHHHHHHHHhhcCCCEEEEEecCcHHHHHHHhCCCHHHHHHHHHHHHHHHHhCCCEEEE------EeccCCCCCHHHH
Confidence            578998887    599999999999999999999999999999999999999999999873      3457789999999


Q ss_pred             HHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCC---CeEEEEeCCccchHHHHHHHHHHhCCCEEeecccc
Q 015894          251 AYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPV---DKLAVHFHDTYGQALSNILASLQMGISTVDSSVSG  327 (398)
Q Consensus       251 ~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~---~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~G  327 (398)
                      .++++++.++|+++|+|+||+|.++|.+++++++.+++++|+   ++|++|+|||+|||+||+++|+++||++||+|++|
T Consensus       153 ~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~~~~l~~H~Hnd~Gla~AN~laA~~aGa~~vd~sv~G  232 (293)
T 3ewb_X          153 IEAVQTAIDAGATVINIPDTVGYTNPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGMATANALAAIENGARRVEGTING  232 (293)
T ss_dssp             HHHHHHHHHTTCCEEEEECSSSCCCHHHHHHHHHHHHHHCTTGGGSEEEEECBCTTSCHHHHHHHHHHTTCCEEEEBGGG
T ss_pred             HHHHHHHHHcCCCEEEecCCCCCCCHHHHHHHHHHHHHhcCCccCceEEEEeCCCcChHHHHHHHHHHhCCCEEEeeccc
Confidence            999999999999999999999999999999999999999985   67999999999999999999999999999999999


Q ss_pred             CCCCCCCCCCCCCccHHHHHHHHHh----CCCCCccChHHHHHHHHHHHHHhCCCCCCCcc
Q 015894          328 LGGCPYAKGASGNVATEDVVYMLNG----LGVRTNVDIRKLMIAGDFICKHLGRTSGSKTA  384 (398)
Q Consensus       328 lGecp~a~graGNa~lE~vv~~L~~----~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~p  384 (398)
                      |||      |+||++||+|+++|+.    +|++|++|+++|.++++++++++|+++|+|.-
T Consensus       233 lGe------raGN~~~E~vv~~L~~~~~~~g~~tgidl~~L~~~s~~v~~~~g~~~~~~~~  287 (293)
T 3ewb_X          233 IGE------RAGNTALEEVAVALHIRKDFYQAETNIVLNQFKNSSDLISRLSGMPVPRNEG  287 (293)
T ss_dssp             CCT------TTCBCBHHHHHHHHHHTHHHHCEEECCCGGGHHHHHHHHHHC----------
T ss_pred             ccc------ccccHhHHHHHHHHHhhhhhcCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCC
Confidence            999      9999999999999985    69999999999999999999999999999864

>3hq1_A 2-isopropylmalate synthase; LEUA, mycobacterium tuberculosis inhibition, bromopyruvate, amino-acid biosynthesis; HET: FLC; 1.70A {Mycobacterium tuberculosis} PDB: 1sr9_A 3hpz_A 3hps_A* 3fig_A 3u6w_A 3hpx_A

Probab=100.00  E-value=1.1e-59  Score=497.21  Aligned_cols=293  Identities=16%  Similarity=0.077  Sum_probs=262.6

Q ss_pred             CCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc---cCCcEEE
Q 015894           94 VPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV---EGARFPV  170 (398)
Q Consensus        94 ~p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~---~~~~l~~  170 (398)
                      +.+.++|+|+|||||+|+++..|++++|++|++.|+++||++||+|||.+.   |  .|.+.+.+..+..   +++++++
T Consensus        68 ~~~~p~i~DtTLRDGeQ~~g~~~s~eeKl~Ia~~L~~lGVd~IEaGfP~as---p--~D~e~v~~i~~~~l~~~~~~i~a  142 (644)
T 3hq1_A           68 IDRAPLWCAVDLRDGNQALIDPMSPARKRRMFDLLVRMGYKEIEVGFPSAS---Q--TDFDFVREIIEQGAIPDDVTIQV  142 (644)
T ss_dssp             CCSCCEEEECCCCCCGGGCSSCCCHHHHHHHHHHHHHHTCSEEEEECTTTC---H--HHHHHHHHHHHTTCSCTTCEEEE
T ss_pred             cCCCCEEEECCCCccccCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCC---h--hHHHHHHHHHhcCCCCCCeEEEE
Confidence            455788999999999999999999999999999999999999999997643   2  4666665555542   4899999


Q ss_pred             EeCCHh-hHHHHHH----cCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecCCCCCC
Q 015894          171 LTPNLK-GFEAAVA----AGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIP-VRGYLSCVVGCPVEGM  244 (398)
Q Consensus       171 l~~n~~-~ie~a~~----~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~-v~~~l~~~fg~~~~~r  244 (398)
                      |+++.+ +++++++    +|.+.|++|.++||.|++.++|+|++++++.+.++++++++++.. +.+.+.+.|++++.+|
T Consensus       143 L~r~~~~did~a~eal~~a~~~~Vhif~stSd~h~~~~l~~s~eevle~~~~~v~~a~~~~~~~~~~~~~v~fs~Edasr  222 (644)
T 3hq1_A          143 LTQCRPELIERTFQACSGAPRAIVHFYNSTSILQRRVVFRANRAEVQAIATDGARKCVEQAAKYPGTQWRFEYSPESYTG  222 (644)
T ss_dssp             EEESCHHHHHHHHHHHTTCSEEEEEEEEECCHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHSCSSEEEEEEEEETGGG
T ss_pred             EecCCHhhHHHHHHHHhcCCCCEEEEEecCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhhhccCceEEEEEcCcccCC
Confidence            999865 5887764    677899999999999999999999999999999999888877532 1112344477788999


Q ss_pred             CCHHHHHHHHHHHHhC---CCC---EEEEccCcCcCCHHHHHHHHHHHHhhCC---CCeEEEEeCCccchHHHHHHHHHH
Q 015894          245 VPPSKVAYVSKQLYDM---GCS---EISLGDTIGVGTPGTVIPMLEAVLDAVP---VDKLAVHFHDTYGQALSNILASLQ  315 (398)
Q Consensus       245 ~~~~~l~~~a~~l~~~---Gad---~I~L~DT~G~~~P~~v~~lv~~l~~~~p---~~~l~~H~Hnd~GlA~ANalaAl~  315 (398)
                      ++++|++++++.+.++   |++   +|+|+||+|+++|..++++|+.+++++|   .++|++|+|||+|||+||+++|++
T Consensus       223 td~dfl~ev~~aa~eaG~~Gad~~~~I~LpDTvG~~tP~~~~~li~~l~~~v~~~~~v~l~vH~HND~GlAvANslaAv~  302 (644)
T 3hq1_A          223 TELEYAKQVCDAVGEVIAPTPERPIIFNLPATVEMTTPNVYADSIEWMSRNLANRESVILSLHPHNDRGTAVAAAELGFA  302 (644)
T ss_dssp             SCHHHHHHHHHHHHHHHCCCSSSCEEEEEEESSCCSCHHHHHHHHHHHHHHSTTGGGEEEEEEEBCTTSCHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCceeEEEecCCCcccCHHHHHHHHHHHHHhcccccCceEEEecCCCCCcHHHHHHHHHH
Confidence            9999999999999985   677   8999999999999999999999999997   478999999999999999999999


Q ss_pred             hCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCCCCCCCccccccccccccc
Q 015894          316 MGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANA  395 (398)
Q Consensus       316 aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~f~~~~  395 (398)
                      +||++||+|++|+||      |+||++||+|+++|+.+|+++++|+++|.++++++++++|+++|+|+|+||+++|+ |+
T Consensus       303 AGA~~Vdgti~G~GE------RaGNa~LE~lv~~L~~~Gi~tgidl~~L~~is~~ve~~~g~~v~~~kpiVG~~aFa-h~  375 (644)
T 3hq1_A          303 AGADRIEGCLFGNGE------RTGNVCLVTLGLNLFSRGVDPQIDFSNIDEIRRTVEYCNQLPVHERHPYGGDLVYT-AF  375 (644)
T ss_dssp             TTCCEEEEBGGGCSS------TTCBCBHHHHHHHHHTTTCCCSSCCTTHHHHHHHHHHHHSCCCCTTCTTTSTTTTE-EC
T ss_pred             hCCCEEEecCCCCCc------cccCccHHHHHHHHHhcccCCccCHHHHHHHHHHHHHHhCCCCCCCccccccccee-ec
Confidence            999999999999999      99999999999999999999999999999999999999999999999999999999 99


Q ss_pred             CCC
Q 015894          396 SKL  398 (398)
Q Consensus       396 s~~  398 (398)
                      |||
T Consensus       376 SGi  378 (644)
T 3hq1_A          376 SGS  378 (644)
T ss_dssp             CHH
T ss_pred             ccc
Confidence            985

>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A*

Probab=100.00  E-value=1.2e-53  Score=445.81  Aligned_cols=275  Identities=19%  Similarity=0.246  Sum_probs=251.4

Q ss_pred             CCccEEEeCCCcccCCCCC-CCCCHHHHHHHHHHHHhcCCCEEEEecCCC---C-CcccCCCCHHHHHHHHH-hccCCcE
Q 015894           95 PGFVKIVEVGPRDGLQNEK-NIVPAVVKVELIKLLVSSGLAVVEATSFVS---P-KWVPQLADAKDVMAAIQ-NVEGARF  168 (398)
Q Consensus        95 p~~I~i~D~TLRDG~Q~~~-~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~---~-~~~p~~~D~~~v~~~i~-~~~~~~l  168 (398)
                      +++|+|+|||||||+|+.+ ..|++++|++|++.|+++|+++||+|++.+   + +++  ..|.+++++.++ .++++++
T Consensus        22 ~~~V~I~DtTLRDG~Qs~~~~~~~tedKl~Ia~~L~~~Gv~~IE~G~patF~~~~rfl--~~d~~e~lr~l~~~~~~~~l   99 (539)
T 1rqb_A           22 PREVGITELVLRDAHQSLMATRMAMEDMVGACADIDAAGYWSVECWGGATYDSCIRFL--NEDPWERLRTFRKLMPNSRL   99 (539)
T ss_dssp             SEECEEEECTTTHHHHHHSTTCCCGGGTGGGHHHHHHTTCSEEEEEETTHHHHHHHTS--CCCHHHHHHHHHHHCTTSCE
T ss_pred             CCceEEEECCCCchhccCCCCCCCHHHHHHHHHHHHHcCCCEEEeCcccccccchhcc--CCCHHHHHHHHHHhCCCCEE
Confidence            4579999999999999996 589999999999999999999999998543   1 222  357888888887 4689999


Q ss_pred             EEEeC--CH------------hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEe
Q 015894          169 PVLTP--NL------------KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLS  234 (398)
Q Consensus       169 ~~l~~--n~------------~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~  234 (398)
                      ++|+|  |.            .+++++.++|++.|+||.++||.              +++.+++++||++|..|+++++
T Consensus       100 ~~L~R~~N~~G~~~ypddv~~~~ve~a~~aGvd~vrIf~s~sd~--------------~ni~~~i~~ak~~G~~v~~~i~  165 (539)
T 1rqb_A          100 QMLLRGQNLLGYRHYNDEVVDRFVDKSAENGMDVFRVFDAMNDP--------------RNMAHAMAAVKKAGKHAQGTIC  165 (539)
T ss_dssp             EEEECGGGTTSSSCCCHHHHHHHHHHHHHTTCCEEEECCTTCCT--------------HHHHHHHHHHHHTTCEEEEEEE
T ss_pred             EEEeccccccCcccCcccccHHHHHHHHhCCCCEEEEEEehhHH--------------HHHHHHHHHHHHCCCeEEEEEE
Confidence            99995  32            34689999999999999999986              4577899999999999999998


Q ss_pred             eeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHHH
Q 015894          235 CVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILAS  313 (398)
Q Consensus       235 ~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANalaA  313 (398)
                      ++++    .++++++++++++++.++|+++|+|+||+|+++|.+++++|+.+++++| +++|++|+|||+|||+||+++|
T Consensus       166 ~~~~----~~~~~e~~~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~i~I~~H~Hnd~GlAvAN~laA  241 (539)
T 1rqb_A          166 YTIS----PVHTVEGYVKLAGQLLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKA  241 (539)
T ss_dssp             CCCS----TTCCHHHHHHHHHHHHHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHHCTTCCEEEEEBCTTSCHHHHHHHH
T ss_pred             eeeC----CCCCHHHHHHHHHHHHHcCCCEEEeCCCCCCcCHHHHHHHHHHHHHhcCCCceEEEEeCCCCChHHHHHHHH
Confidence            7654    5679999999999999999999999999999999999999999999998 7899999999999999999999


Q ss_pred             HHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCCCCCCCccc-ccccccc
Q 015894          314 LQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAI-ALSKTST  392 (398)
Q Consensus       314 l~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pi-vG~~~f~  392 (398)
                      +++||++||+|++|+|+      |+||++||+++.+|+.+|+++++|+++|.+++++++++.+...|.+.|+ +|.++|.
T Consensus       242 veAGa~~VD~ti~g~Ge------rtGN~~lE~lv~~L~~~g~~tgidl~~L~~is~~v~~~~~~~~~~~~~~~~~~~v~~  315 (539)
T 1rqb_A          242 IEAGVDVVDTAISSMSL------GPGHNPTESVAEMLEGTGYTTNLDYDRLHKIRDHFKAIRPKYKKFESKTLVDTSIFK  315 (539)
T ss_dssp             HHTTCSEEEEBCGGGCS------TTSBCBHHHHHHHTTTSSEECCCCHHHHHHHHHHHHHHGGGGGGGCCSCSCCCTHHH
T ss_pred             HHhCCCEEEEeccccCC------CccChhHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHHhCCCcCCCCCccCCCceEE
Confidence            99999999999999999      9999999999999999999999999999999999999999999999999 9999999


Q ss_pred             cccC
Q 015894          393 ANAS  396 (398)
Q Consensus       393 ~~~s  396 (398)
                       |++
T Consensus       316 -he~  318 (539)
T 1rqb_A          316 -SQI  318 (539)
T ss_dssp             -HCC
T ss_pred             -ecC
Confidence             874

>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5

Probab=100.00  E-value=1.6e-52  Score=418.09  Aligned_cols=257  Identities=21%  Similarity=0.280  Sum_probs=235.8

Q ss_pred             CCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEe----cCC-CCCcccCCCCHHHHHHHHH-hccCCcE
Q 015894           95 PGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEAT----SFV-SPKWVPQLADAKDVMAAIQ-NVEGARF  168 (398)
Q Consensus        95 p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG----~~~-~~~~~p~~~D~~~v~~~i~-~~~~~~l  168 (398)
                      +++|+|+|||||||+|++++.|++++|++|++.|+++|++.||+|    +|. +|++.|++.+.+++++.++ ..+++++
T Consensus         6 ~~~v~i~DttlRDG~Q~~~~~~~~e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~~~~~~~e~l~~i~~~~~~~~i   85 (345)
T 1nvm_A            6 SKKLYISDVTLRDGSHAIRHQYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQI   85 (345)
T ss_dssp             CCBCEEEECTTTHHHHHTTTCCCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSEE
T ss_pred             CCCcEEEECCCCcccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcccCCCCCHHHHHHHHHhhCCCCEE
Confidence            357999999999999999999999999999999999999999997    664 6888888899888887776 4689999


Q ss_pred             EEE-eC---CHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC
Q 015894          169 PVL-TP---NLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGM  244 (398)
Q Consensus       169 ~~l-~~---n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r  244 (398)
                      ++| .+   +.++++++.++|++.|+|++++|+.              +.+.+++++||++|+.++++++      +..+
T Consensus        86 ~~l~~p~~~~~~~i~~a~~aGvd~v~I~~~~s~~--------------~~~~~~i~~ak~~G~~v~~~~~------~a~~  145 (345)
T 1nvm_A           86 ATLLLPGIGSVHDLKNAYQAGARVVRVATHCTEA--------------DVSKQHIEYARNLGMDTVGFLM------MSHM  145 (345)
T ss_dssp             EEEECBTTBCHHHHHHHHHHTCCEEEEEEETTCG--------------GGGHHHHHHHHHHTCEEEEEEE------STTS
T ss_pred             EEEecCCcccHHHHHHHHhCCcCEEEEEEeccHH--------------HHHHHHHHHHHHCCCEEEEEEE------eCCC
Confidence            999 44   4789999999999999999998874              3457889999999999997776      3467


Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          245 VPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       245 ~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      ++++++.++++.+.++|+++|+|+||+|.++|.+++++|+.+++++| +++|++|+|||+|||+||+++|+++||++||+
T Consensus       146 ~~~e~~~~ia~~~~~~Ga~~i~l~DT~G~~~P~~v~~lv~~l~~~~~~~~pi~~H~Hn~~G~avAn~laA~~aGa~~vd~  225 (345)
T 1nvm_A          146 IPAEKLAEQGKLMESYGATCIYMADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEGCDRVDA  225 (345)
T ss_dssp             SCHHHHHHHHHHHHHHTCSEEEEECTTCCCCHHHHHHHHHHHHHHSCTTSEEEEECBCTTSCHHHHHHHHHHTTCCEEEE
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCCcCccCHHHHHHHHHHHHHhcCCCceEEEEECCCccHHHHHHHHHHHcCCCEEEe
Confidence            89999999999999999999999999999999999999999999996 78999999999999999999999999999999


Q ss_pred             ccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHH-hCC
Q 015894          324 SVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKH-LGR  377 (398)
Q Consensus       324 Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~-~g~  377 (398)
                      |++||||      |+||++||+++++|+.+|+++++|+++|.++++++++. .+.
T Consensus       226 tv~GlG~------~aGN~~le~lv~~L~~~g~~~~idl~~l~~~~~~~~~~~~~~  274 (345)
T 1nvm_A          226 SLAGMGA------GAGNAPLEVFIAVAERLGWNHGTDLYTLMDAADDIVRPLQDR  274 (345)
T ss_dssp             BGGGCSS------TTCBCBHHHHHHHHHHHTCBCCSCHHHHHHHHHHTTGGGCSS
T ss_pred             cchhccC------CccCcCHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHhcC
Confidence            9999999      99999999999999999999999999999999999876 444

>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae}

Probab=100.00  E-value=4.5e-52  Score=428.39  Aligned_cols=269  Identities=21%  Similarity=0.256  Sum_probs=241.9

Q ss_pred             CCccEEEeCCCcccCCCCC-CCCCHHHHHHHHHHHHhcCCCEEEEecCCC---C-CcccCCCCHHHHHHHHHh-ccCCcE
Q 015894           95 PGFVKIVEVGPRDGLQNEK-NIVPAVVKVELIKLLVSSGLAVVEATSFVS---P-KWVPQLADAKDVMAAIQN-VEGARF  168 (398)
Q Consensus        95 p~~I~i~D~TLRDG~Q~~~-~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~---~-~~~p~~~D~~~v~~~i~~-~~~~~l  168 (398)
                      +++|+|+|||||||+|+++ ..|++++|++|++.|+++|++.||+|++.+   + +++  ..|.++.++.+++ ++++++
T Consensus         5 ~~~V~I~DtTLRDG~Qs~~~~~~~~~dkl~Ia~~L~~~Gv~~IE~g~~atF~~~~r~~--~~d~~e~l~~i~~~~~~~~l   82 (464)
T 2nx9_A            5 IKRVGVTDVVLRDAHQSLFATRLRIDDMLPIAQQLDQIGYWSLECWGGATFDSCIRFL--GEDPWQRLRLLKQAMPNTPL   82 (464)
T ss_dssp             CCCCEEEECTTTHHHHHHSTTCCCGGGTGGGHHHHHTSCCSEEEEEETTHHHHHHHTT--CCCHHHHHHHHHHHCSSSCE
T ss_pred             CCCcEEEECCccccccCCCCcCCCHHHHHHHHHHHHHcCCCEEEeCcCccccchhhcc--CCCHHHHHHHHHHhCCCCeE
Confidence            4579999999999999986 589999999999999999999999998542   1 222  2578888888874 689999


Q ss_pred             EEEeC--CH------------hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEe
Q 015894          169 PVLTP--NL------------KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLS  234 (398)
Q Consensus       169 ~~l~~--n~------------~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~  234 (398)
                      ++|+|  |.            .++++++++|++.|+||.++||.              +++.+++++||+.|+.|+++++
T Consensus        83 ~~l~R~~N~~G~~~~~ddv~~~~v~~a~~~Gvd~i~if~~~sd~--------------~ni~~~i~~ak~~G~~v~~~i~  148 (464)
T 2nx9_A           83 QMLLRGQNLLGYRHYADDVVDTFVERAVKNGMDVFRVFDAMNDV--------------RNMQQALQAVKKMGAHAQGTLC  148 (464)
T ss_dssp             EEEECGGGTTSSSCCCHHHHHHHHHHHHHTTCCEEEECCTTCCT--------------HHHHHHHHHHHHTTCEEEEEEE
T ss_pred             EEEeccccccCcccccchhhHHHHHHHHhCCcCEEEEEEecCHH--------------HHHHHHHHHHHHCCCEEEEEEE
Confidence            99996  32            34689999999999999999986              4567899999999999999998


Q ss_pred             eeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHH
Q 015894          235 CVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASL  314 (398)
Q Consensus       235 ~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl  314 (398)
                      ++++    .++++++++++++++.++||++|+||||+|+++|.+++++|+.+++++ +++|++|+|||+|||+||+++|+
T Consensus       149 ~~~~----~~~~~e~~~~~a~~l~~~Gad~I~l~DT~G~~~P~~v~~lv~~l~~~~-~~~i~~H~Hnd~GlAvAN~laAv  223 (464)
T 2nx9_A          149 YTTS----PVHNLQTWVDVAQQLAELGVDSIALKDMAGILTPYAAEELVSTLKKQV-DVELHLHCHSTAGLADMTLLKAI  223 (464)
T ss_dssp             CCCC----TTCCHHHHHHHHHHHHHTTCSEEEEEETTSCCCHHHHHHHHHHHHHHC-CSCEEEEECCTTSCHHHHHHHHH
T ss_pred             eeeC----CCCCHHHHHHHHHHHHHCCCCEEEEcCCCCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCChHHHHHHHHH
Confidence            7664    457999999999999999999999999999999999999999999998 47899999999999999999999


Q ss_pred             HhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCCCCCCCcccccccc
Q 015894          315 QMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKT  390 (398)
Q Consensus       315 ~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~  390 (398)
                      ++||++||+|++|+|+      |+||++||+++.+|+.+|+++++|+++|.+++++++++.+...|...+.+|.+.
T Consensus       224 ~AGa~~VD~ti~g~ge------rtGN~~lE~lv~~L~~~g~~tgidl~~L~~is~~v~~~~~~~~~~~~~~~g~~~  293 (464)
T 2nx9_A          224 EAGVDRVDTAISSMSG------TYGHPATESLVATLQGTGYDTGLDIAKLEQIAAYFRDVRKKYHAFEGMMKGSDA  293 (464)
T ss_dssp             HTTCSEEEEBCGGGCS------TTSCCBHHHHHHHHTTSTTCCCCCHHHHHHHHHHHHHHHHHTGGGCCSCCSCCT
T ss_pred             HhCCCEEEEeccccCC------CCcCHHHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHHhhcccccCCCcCCcC
Confidence            9999999999999999      999999999999999999999999999999999999999997776667777654

>3dxi_A Putative aldolase; TIM barrel, 11107N, PSI2, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Bacteroides vulgatus atcc 8482}

Probab=100.00  E-value=3.8e-52  Score=411.09  Aligned_cols=265  Identities=17%  Similarity=0.128  Sum_probs=230.1

Q ss_pred             ccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcc----cCCCCHHHHHHHHHhccCCcEEEEe
Q 015894           97 FVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWV----PQLADAKDVMAAIQNVEGARFPVLT  172 (398)
Q Consensus        97 ~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~----p~~~D~~~v~~~i~~~~~~~l~~l~  172 (398)
                      +|+|+|||||||+|++++.|++++|++|++.|+++|+++||+|+|++|++.    |++.+ +++++.+++.|++++++|+
T Consensus         2 ~V~I~DtTlRDG~Qs~~~~~~~~~k~~ia~~L~~aGv~~IEvg~~~~p~~~f~~~~~~~~-~e~l~~i~~~~~~~~~~L~   80 (320)
T 3dxi_A            2 SLKILDCTLRDGGYYTNWDFNSKIVDAYILAMNELPIDYLEVGYRNKPSKEYMGKFGYTP-VSVLKHLRNISTKKIAIML   80 (320)
T ss_dssp             -CEEEECHHHHHGGGGTTCCCHHHHHHHHHHHHTTTCCEEEEEECCSCCSSCCCHHHHCC-HHHHHHHHHHCCSEEEEEE
T ss_pred             eEEEEECCcCccccCCCCcCCHHHHHHHHHHHHHhCCCEEEEecccCCccccccccccCh-HHHHHHHhhccCCeEEEEe
Confidence            589999999999999999999999999999999999999999999988875    77765 6677777778999999999


Q ss_pred             CCH----hhHH---HHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCC
Q 015894          173 PNL----KGFE---AAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMV  245 (398)
Q Consensus       173 ~n~----~~ie---~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~  245 (398)
                      |+.    ++++   .+.++|++.|+++....              .++.+.+++++||++|+.|+++++++  +|..   
T Consensus        81 r~~~~~~~dv~~~~~a~~~Gvd~~ri~~~~~--------------nle~~~~~v~~ak~~G~~v~~~~~~~--~~~~---  141 (320)
T 3dxi_A           81 NEKNTTPEDLNHLLLPIIGLVDMIRIAIDPQ--------------NIDRAIVLAKAIKTMGFEVGFNVMYM--SKWA---  141 (320)
T ss_dssp             EGGGCCGGGHHHHHGGGTTTCSEEEEEECGG--------------GHHHHHHHHHHHHTTTCEEEEEECCT--TTGG---
T ss_pred             cCCCCChhhHHHHHHhhhcCCCEEEEEecHH--------------HHHHHHHHHHHHHHCCCEEEEEEEeC--CCCC---
Confidence            752    2444   44668999999997532              26777889999999999999888852  3322   


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeecc
Q 015894          246 PPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSV  325 (398)
Q Consensus       246 ~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv  325 (398)
                      ++++++..+.+ .++|++.|+|+||+|.++|.+++++++.+++++| ++|++|+|||+|||+||+++|+++||++||+|+
T Consensus       142 ~~~~~l~~~~~-~~~G~~~i~l~Dt~G~~~P~~~~~lv~~l~~~~~-~~i~~H~Hn~~G~a~an~laA~~aGa~~vd~si  219 (320)
T 3dxi_A          142 EMNGFLSKLKA-IDKIADLFCMVDSFGGITPKEVKNLLKEVRKYTH-VPVGFHGHDNLQLGLINSITAIDDGIDFIDATI  219 (320)
T ss_dssp             GSTTSGGGGGG-GTTTCSEEEEECTTSCCCHHHHHHHHHHHHHHCC-SCEEEECBCTTSCHHHHHHHHHHTTCSEEEEBG
T ss_pred             CHHHHHHHHHH-hhCCCCEEEECcccCCCCHHHHHHHHHHHHHhCC-CeEEEEeCCCCccHHHHHHHHHHhCCCEEEEec
Confidence            33334444444 3679999999999999999999999999999997 689999999999999999999999999999999


Q ss_pred             ccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCCCCCCCcccccccccccccCC
Q 015894          326 SGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSKTSTANASK  397 (398)
Q Consensus       326 ~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~~f~~~~s~  397 (398)
                      +|||+      ++||++||+++++|+. ++++++|++.|.++.++++++.      +++++|.++|. |+||
T Consensus       220 ~GlG~------~~GN~~~E~lv~~L~~-~~~~~~dl~~l~~~~~~~~~~~------~~~~~g~~~~~-~~sg  277 (320)
T 3dxi_A          220 TGMGR------GAGNLKMELLLTYLNK-HHGLNVDFNVLGNIITTFTPLL------EKYQWGTNLPY-MLSG  277 (320)
T ss_dssp             GGCSS------TTCBCBHHHHHHHHHH-HSCCCCCHHHHHHHHHHHHHHH------HHHCCSCCHHH-HHHH
T ss_pred             cccCC------cccchhHHHHHHHHHh-ccCCCcCHHHHHHHHHHHHHHH------HhcCCCCchhh-HHHh
Confidence            99999      9999999999999998 5667999999999999999986      78999999998 8875

>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A

Probab=100.00  E-value=4.9e-50  Score=431.24  Aligned_cols=281  Identities=17%  Similarity=0.136  Sum_probs=245.2

Q ss_pred             CCccEEEeCCCcccCCCCCC-CCCHHHHHHHHHHHHhcC--CCEEEEecCCCCC-cccC-CCCHHHHHHHHH-hccCCcE
Q 015894           95 PGFVKIVEVGPRDGLQNEKN-IVPAVVKVELIKLLVSSG--LAVVEATSFVSPK-WVPQ-LADAKDVMAAIQ-NVEGARF  168 (398)
Q Consensus        95 p~~I~i~D~TLRDG~Q~~~~-~~~~~~k~~ia~~L~~aG--v~~IEvG~~~~~~-~~p~-~~D~~~v~~~i~-~~~~~~l  168 (398)
                      +++|+|+|||||||+|+++. +|++++|++|++.|+++|  ++.||+|...+-+ .+|. -.++++.++.++ .+|++++
T Consensus       100 ~~~I~I~DTTLRDG~Qs~~~~r~~~edkl~Ia~~Ld~~Gvg~~~IE~gGGatfd~~~~f~~e~p~e~l~~l~~~~~~~~l  179 (718)
T 3bg3_A          100 HPGLLLMDTTFRDAHQSLLATRVRTHDLKKIAPYVAHNFSKLFSMENWGGATFDVAMRFLYECPWRRLQELRELIPNIPF  179 (718)
T ss_dssp             CCSCEEEECTTTHHHHHHSTTCCCHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHTSCCCHHHHHHHHHHHCSSSCE
T ss_pred             cCCeEEeecCCChhhCCCCCcCCCHHHHHHHHHHHHHhcCCCcEEEecCCcchhhccccCCCCHHHHHHHHHHHcccchH
Confidence            35799999999999999975 599999999999999995  6669998111100 0000 146777777765 6789999


Q ss_pred             EEEeCC--------------HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEe
Q 015894          169 PVLTPN--------------LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLS  234 (398)
Q Consensus       169 ~~l~~n--------------~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~  234 (398)
                      ++|.|.              ..++++++++|++.|+||.++|+              +++++..++++++.|..|+++++
T Consensus       180 ~~l~R~~n~vgy~~~p~~~~~~~i~~a~~~Gvd~irIf~s~n~--------------l~~l~~~i~~ak~~G~~v~~~i~  245 (718)
T 3bg3_A          180 QMLLRGANAVGYTNYPDNVVFKFCEVAKENGMDVFRVFDSLNY--------------LPNMLLGMEAAGSAGGVVEAAIS  245 (718)
T ss_dssp             EEEECGGGTTSSSCCCHHHHHHHHHHHHHHTCCEEEEECSSCC--------------HHHHHHHHHHHHTTTSEEEEEEE
T ss_pred             HHHhcccccccccccCCcchHHHHHHHHhcCcCEEEEEecHHH--------------HHHHHHHHHHHHHcCCeEEEEEE
Confidence            999863              25789999999999999999875              35778889999999999999999


Q ss_pred             ee--ecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHH
Q 015894          235 CV--VGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILA  312 (398)
Q Consensus       235 ~~--fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANala  312 (398)
                      +.  |.+|..+.+++++++++++++.++||++|+|+||+|+++|.+++++|+++++++|+++|++|+|||+|||+||+++
T Consensus       246 ~~~d~~dp~r~~~~~e~~~~~a~~l~~~Ga~~I~l~DT~G~~~P~~v~~lV~~lk~~~p~~~I~~H~Hnd~GlAvANsla  325 (718)
T 3bg3_A          246 YTGDVADPSRTKYSLQYYMGLAEELVRAGTHILCIKDMAGLLKPTACTMLVSSLRDRFPDLPLHIHTHDTSGAGVAAMLA  325 (718)
T ss_dssp             CCSCTTCTTCCTTCHHHHHHHHHHHHHHTCSEEEEECTTSCCCHHHHHHHHHHHHHHSTTCCEEEECCCTTSCHHHHHHH
T ss_pred             eeccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCcCCCcCHHHHHHHHHHHHHhCCCCeEEEEECCCccHHHHHHHH
Confidence            76  3455444569999999999999999999999999999999999999999999999889999999999999999999


Q ss_pred             HHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCCCCCCC--cccccc--
Q 015894          313 SLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSK--TAIALS--  388 (398)
Q Consensus       313 Al~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~--~pivG~--  388 (398)
                      |+++||++||+|++||||      |+||++||+++++|+.+|+++++|+++|.+++++++++.+.+.|.+  .+++|.  
T Consensus       326 AveAGa~~VD~ti~GlGe------rtGN~~lE~vv~~L~~~g~~tgidl~~L~~~s~~v~~~~~~~~~~~~~~~~~g~~~  399 (718)
T 3bg3_A          326 CAQAGADVVDVAADSMSG------MTSQPSMGALVACTRGTPLDTEVPMERVFDYSEYWEGARGLYAAFDCTATMKSGNS  399 (718)
T ss_dssp             HHHTTCSEEEEBCGGGCS------TTSCCBHHHHHHHHTTSTTCCCCCHHHHHHHHHHHHHHHHHTGGGCGGGTCCSCCT
T ss_pred             HHHhCCCEEEecCccccc------ccCchhHHHHHHHHHhcCCCcccCHHHHHHHHHHHHHHhCCCcCCcCCcccccccc
Confidence            999999999999999999      9999999999999999999999999999999999999999999988  999998  


Q ss_pred             cccccccC
Q 015894          389 KTSTANAS  396 (398)
Q Consensus       389 ~~f~~~~s  396 (398)
                      ++|. |+.
T Consensus       400 ~v~~-~e~  406 (718)
T 3bg3_A          400 DVYE-NEI  406 (718)
T ss_dssp             THHH-HCC
T ss_pred             ceee-ccC
Confidence            5676 653

>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A*

Probab=100.00  E-value=2.6e-46  Score=421.90  Aligned_cols=277  Identities=16%  Similarity=0.121  Sum_probs=240.2

Q ss_pred             CCccEEEeCCCcccCCCCCC-CCCHHHHHHHHHHHHhcCCC--EEEEe----cCCCCCcccCCCCHHHHHHHHH-hccCC
Q 015894           95 PGFVKIVEVGPRDGLQNEKN-IVPAVVKVELIKLLVSSGLA--VVEAT----SFVSPKWVPQLADAKDVMAAIQ-NVEGA  166 (398)
Q Consensus        95 p~~I~i~D~TLRDG~Q~~~~-~~~~~~k~~ia~~L~~aGv~--~IEvG----~~~~~~~~p~~~D~~~v~~~i~-~~~~~  166 (398)
                      +++|+|+|||||||+|+++. .|++++|++|++.|+++|++  .||+|    |++.-.+.  ..++++.++.++ .+|++
T Consensus       548 ~~~v~i~DtTLRDG~Qs~~~~~~~~~dkl~ia~~L~~~gv~~~~iE~~gga~f~~~~~f~--~~~p~e~l~~~~~~~~~~  625 (1165)
T 2qf7_A          548 EKRVLLTDTTMRDGHQSLLATRMRTYDIARIAGTYSHALPNLLSLECWGGATFDVSMRFL--TEDPWERLALIREGAPNL  625 (1165)
T ss_dssp             CSSCEEEECTTTHHHHHHHTTCCCHHHHHHHHHHHHHHCTTCSEEEEEETTHHHHHHHHH--CCCHHHHHHHHHHHCTTS
T ss_pred             CCceEEEecccccccccCCcccCCHHHHHHHHHHHHHhCCCceEEEeCCCCccHHHHhhc--CCCHHHHHHHHHHHchhh
Confidence            35799999999999999975 69999999999999999655  59984    33210010  146777777766 67899


Q ss_pred             cEEEEeCC--------------HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEE
Q 015894          167 RFPVLTPN--------------LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGY  232 (398)
Q Consensus       167 ~l~~l~~n--------------~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~  232 (398)
                      ++++|.|.              ..++++++++|++.|+||.++|+              +++++..++++++.|..|+++
T Consensus       626 ~~~~l~R~~n~vg~~~~~~~~~~~~i~~a~~~g~d~irif~sl~~--------------~~~~~~~i~~~~~~g~~v~~~  691 (1165)
T 2qf7_A          626 LLQMLLRGANGVGYTNYPDNVVKYFVRQAAKGGIDLFRVFDCLNW--------------VENMRVSMDAIAEENKLCEAA  691 (1165)
T ss_dssp             EEEEEEETTTBTCSSCCCHHHHHHHHHHHHHHTCCEEEEECTTCC--------------GGGGHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHhccccccccccCCchhHHHHHHHHHhcCcCEEEEEeeHHH--------------HHHHHHHHHHHHhccceEEEE
Confidence            99999752              25789999999999999998875              356778899999999999999


Q ss_pred             Eeee--ecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHH
Q 015894          233 LSCV--VGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNI  310 (398)
Q Consensus       233 l~~~--fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANa  310 (398)
                      ++++  |.+|..+.++++|++++++++.++|+++|+||||+|+++|.+++++|+.+++++ +++|++|+|||+|||+||+
T Consensus       692 i~~~~~~~d~~r~~~~~~~~~~~~~~~~~~Ga~~i~l~DT~G~~~P~~~~~lv~~l~~~~-~~~i~~H~Hnd~GlAvAn~  770 (1165)
T 2qf7_A          692 ICYTGDILNSARPKYDLKYYTNLAVELEKAGAHIIAVKDMAGLLKPAAAKVLFKALREAT-GLPIHFHTHDTSGIAAATV  770 (1165)
T ss_dssp             EECCSCTTCTTSGGGCHHHHHHHHHHHHHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHC-SSCEEEEECBTTSCHHHHH
T ss_pred             EEEeccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCccCCcCHHHHHHHHHHHHHhc-CCeEEEEECCCCCHHHHHH
Confidence            9876  344433448999999999999999999999999999999999999999999999 5789999999999999999


Q ss_pred             HHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCCCCCCCccccccc-
Q 015894          311 LASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSK-  389 (398)
Q Consensus       311 laAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~-  389 (398)
                      ++|+++||++||+|++||||      |+||++||+++++|+.+|+++++|+++|.+++++++++.+...|...+++|.+ 
T Consensus       771 laAv~aGa~~vd~ti~GlGe------~~Gn~~le~vv~~L~~~g~~tgidl~~L~~~s~~~~~~~~~~~~~~~~~~~~~~  844 (1165)
T 2qf7_A          771 LAAVEAGVDAVDAAMDALSG------NTSQPCLGSIVEALSGSERDPGLDPAWIRRISFYWEAVRNQYAAFESDLKGPAS  844 (1165)
T ss_dssp             HHHHHTTCSEEEEBCGGGCS------BTSCCBHHHHHHHHTTSTTCCCCCHHHHHHHHHHHHHHHGGGGGGCCCCCSCCT
T ss_pred             HHHHHhCCCEEEecccccCC------CccchhHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHhhhccCCCCCccCCcc
Confidence            99999999999999999999      99999999999999999999999999999999999999999888777888854 


Q ss_pred             -cccccc
Q 015894          390 -TSTANA  395 (398)
Q Consensus       390 -~f~~~~  395 (398)
                       ++. |+
T Consensus       845 ~v~~-~~  850 (1165)
T 2qf7_A          845 EVYL-HE  850 (1165)
T ss_dssp             THHH-HC
T ss_pred             ceEe-cc
Confidence             455 44

>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A*

Probab=100.00  E-value=3.5e-45  Score=412.07  Aligned_cols=277  Identities=16%  Similarity=0.158  Sum_probs=243.2

Q ss_pred             CCccEEEeCCCcccCCCCCCC-CCHHHHHHHHHHHHhc--CCCEEEEecCCC-CCcccCC-CCHHHHHHHHH-hccCCcE
Q 015894           95 PGFVKIVEVGPRDGLQNEKNI-VPAVVKVELIKLLVSS--GLAVVEATSFVS-PKWVPQL-ADAKDVMAAIQ-NVEGARF  168 (398)
Q Consensus        95 p~~I~i~D~TLRDG~Q~~~~~-~~~~~k~~ia~~L~~a--Gv~~IEvG~~~~-~~~~p~~-~D~~~v~~~i~-~~~~~~l  168 (398)
                      .++|+|+|||||||+|++++. |++++|++|++.|+++  |+..||++.... .-.+|++ .|+++.++.++ .+|++++
T Consensus       530 ~~~v~I~DtTlRDG~Qs~~~~r~~~~~kl~ia~~L~~~~~G~~~lE~~Gga~~e~~~~~~~e~~~e~l~~l~~~~~~~~~  609 (1150)
T 3hbl_A          530 QDDVLLTDTTFRDAHQSLLATRVRTKDMINIASKTADVFKDGFSLEMWGGATFDVAYNFLKENPWERLERLRKAIPNVLF  609 (1150)
T ss_dssp             CSSBEEEECTTTHHHHHHSTTCCCHHHHHHHHHHHHHHTTTCSEEEEEETTHHHHHHHTSCCCHHHHHHHHHHHCCSSEE
T ss_pred             CCceEEEECccchhhccCCCcCCCHHHHHHHHHHHHHhhCCCcEEeecCCceEEecccccCCCHHHHHHHHHHhCCCCeE
Confidence            357999999999999999875 9999999999999999  999999962211 1112344 58888888887 5789999


Q ss_pred             EEEeCC--------------HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEe
Q 015894          169 PVLTPN--------------LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLS  234 (398)
Q Consensus       169 ~~l~~n--------------~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~  234 (398)
                      ++|+|.              .+++++|.++|++.||+|+++||.|..              +..++.+++.|..+++.+|
T Consensus       610 ~~l~R~~n~vgy~~~pd~v~~~~v~~a~~~Gvd~irif~~~sd~~~~--------------~~~~~~~~e~g~~~~~~i~  675 (1150)
T 3hbl_A          610 QMLLRASNAVGYKNYPDNVIHKFVQESAKAGIDVFRIFDSLNWVDQM--------------KVANEAVQEAGKISEGTIC  675 (1150)
T ss_dssp             EEEEETTTBTCSSCCCHHHHHHHHHHHHHTTCCEEEEECTTCCGGGG--------------HHHHHHHHHTTCEEEEEEE
T ss_pred             EEEeccccccccccCCchhHHHHHHHHHhCCcCEEEEEeeCCHHHHH--------------HHHHHHHHHHhhheeEEEe
Confidence            999963              235889999999999999999998643              3567788889999999999


Q ss_pred             ee---ecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHH
Q 015894          235 CV---VGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNIL  311 (398)
Q Consensus       235 ~~---fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANal  311 (398)
                      ++   ++.++.++++++|+.++++++.++|+++|+|+||+|+++|.+++++|+.+++++ +++|++|+|||+|||+||++
T Consensus       676 ~~~~~~~pe~~~~~~~~~~~~~a~~~~~~Ga~~i~l~Dt~G~~~P~~~~~lv~~l~~~~-~~~i~~H~Hnt~G~a~An~l  754 (1150)
T 3hbl_A          676 YTGDILNPERSNIYTLEYYVKLAKELEREGFHILAIKDMAGLLKPKAAYELIGELKSAV-DLPIHLHTHDTSGNGLLTYK  754 (1150)
T ss_dssp             CCSCTTCTTTCSSSSHHHHHHHHHHHHHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHC-CSCEEEEECBTTSCHHHHHH
T ss_pred             ecccccChhhcCCCCHHHHHHHHHHHHHcCCCeeeEcCccCCCCHHHHHHHHHHHHHhc-CCeEEEEeCCCCcHHHHHHH
Confidence            87   655667789999999999999999999999999999999999999999999997 57999999999999999999


Q ss_pred             HHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCCCCCCCccccccc--
Q 015894          312 ASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALSK--  389 (398)
Q Consensus       312 aAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~~--  389 (398)
                      +|+++||++||+|++||||      ++||++||+++++|+.+|+++++|+++|.+++++++++.+.-.|...++.|.+  
T Consensus       755 aA~~aGa~~vD~ai~GlG~------~~gn~~lE~lv~~L~~~g~~tgidl~~l~~~~~~~~~~~~~y~~~~~~~~~~~~~  828 (1150)
T 3hbl_A          755 QAIDAGVDIIDTAVASMSG------LTSQPSANSLYYALNGFPRHLRTDIEGMESLSHYWSTVRTYYSDFESDIKSPNTE  828 (1150)
T ss_dssp             HHHHTTCSEEEEBCGGGCS------BTSCCBHHHHHHHTTTSSCCBCSCHHHHHHHHHHHHHHHGGGGGGCCSCCSCCTT
T ss_pred             HHHHhCCCEEEEeccccCC------CCCCccHHHHHHHHHhcCCCcCccHHHHHHHHHHHHHHHhhhccccCCCCCCccc
Confidence            9999999999999999999      99999999999999999999999999999999999999987766666666654  


Q ss_pred             ccc
Q 015894          390 TST  392 (398)
Q Consensus       390 ~f~  392 (398)
                      ++.
T Consensus       829 v~~  831 (1150)
T 3hbl_A          829 IYQ  831 (1150)
T ss_dssp             HHH
T ss_pred             eEE
Confidence            455

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=98.74  E-value=1.4e-07  Score=90.02  Aligned_cols=173  Identities=13%  Similarity=0.129  Sum_probs=111.2

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCH-----------------HHH---HHHHHh-ccCCcEEEEeC
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADA-----------------KDV---MAAIQN-VEGARFPVLTP  173 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~-----------------~~v---~~~i~~-~~~~~l~~l~~  173 (398)
                      ..+.+..+++++.|.+.|+|.||+|.|.+.+    ++|.                 +.+   .+.+++ .|++.+..+..
T Consensus        27 ~p~~~~~~~~~~~l~~~G~D~IElG~P~sdP----~adgp~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pi~~m~y  102 (262)
T 2ekc_A           27 YPDYETSLKAFKEVLKNGTDILEIGFPFSDP----VADGPTIQVAHEVALKNGIRFEDVLELSETLRKEFPDIPFLLMTY  102 (262)
T ss_dssp             SSCHHHHHHHHHHHHHTTCSEEEEECCCSCC----TTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEECC
T ss_pred             CCChHHHHHHHHHHHHcCCCEEEECCCCCCc----ccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCEEEEec
Confidence            4667889999999999999999999876532    1221                 112   333332 33666666643


Q ss_pred             -C-------HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCC
Q 015894          174 -N-------LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMV  245 (398)
Q Consensus       174 -n-------~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~  245 (398)
                       |       .+.++.+.++|++.+.+..-            .    ++.+.+.++.++++|+.+.. ++    .|.   +
T Consensus       103 ~n~v~~~g~~~f~~~~~~aG~dgvii~dl------------~----~ee~~~~~~~~~~~gl~~i~-l~----~p~---t  158 (262)
T 2ekc_A          103 YNPIFRIGLEKFCRLSREKGIDGFIVPDL------------P----PEEAEELKAVMKKYVLSFVP-LG----APT---S  158 (262)
T ss_dssp             HHHHHHHCHHHHHHHHHHTTCCEEECTTC------------C----HHHHHHHHHHHHHTTCEECC-EE----CTT---C
T ss_pred             CcHHHHhhHHHHHHHHHHcCCCEEEECCC------------C----HHHHHHHHHHHHHcCCcEEE-Ee----CCC---C
Confidence             3       23467888999998777421            1    24466778999999987531 11    232   4


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHH---HHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894          246 PPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGT---VIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       246 ~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~---v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                      +++.+..+++..... +..+.+.+++|..+|..   +.++++.+++.. +.|+.+    .+|...++.++++.+||+.|
T Consensus       159 ~~~rl~~ia~~a~gf-iy~vs~~g~TG~~~~~~~~~~~~~v~~vr~~~-~~pv~v----G~GI~t~e~~~~~~~gADgv  231 (262)
T 2ekc_A          159 TRKRIKLICEAADEM-TYFVSVTGTTGAREKLPYERIKKKVEEYRELC-DKPVVV----GFGVSKKEHAREIGSFADGV  231 (262)
T ss_dssp             CHHHHHHHHHHCSSC-EEEESSCC---------CHHHHHHHHHHHHHC-CSCEEE----ESSCCSHHHHHHHHTTSSEE
T ss_pred             CHHHHHHHHHhCCCC-EEEEecCCccCCCCCcCcccHHHHHHHHHhhc-CCCEEE----eCCCCCHHHHHHHHcCCCEE
Confidence            567777776544211 34556678999998855   889999999876 456777    88999889999999999854

>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}

Probab=98.69  E-value=1.5e-06  Score=85.49  Aligned_cols=228  Identities=12%  Similarity=0.095  Sum_probs=149.6

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe--CCHhhHHHHHHcCCCEEEE
Q 015894          114 NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT--PNLKGFEAAVAAGAKEVAI  191 (398)
Q Consensus       114 ~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~n~~~ie~a~~~Gv~~v~i  191 (398)
                      ..++.++.++.++.+.+.|+..|-++....|.+.+...+..++++.+++..+..+..-.  .+.+.++...++|++.+.+
T Consensus        89 ~~ls~eei~~~~~~~~~~G~~~i~l~gGe~p~~~~~~~~~~~l~~~ik~~~~i~i~~s~g~~~~e~l~~L~~aG~~~i~i  168 (350)
T 3t7v_A           89 YRLTMEEIKETCKTLKGAGFHMVDLTMGEDPYYYEDPNRFVELVQIVKEELGLPIMISPGLMDNATLLKAREKGANFLAL  168 (350)
T ss_dssp             CBCCHHHHHHHHHHHTTSCCSEEEEEECCCHHHHHSTHHHHHHHHHHHHHHCSCEEEECSSCCHHHHHHHHHTTEEEEEC
T ss_pred             eeCCHHHHHHHHHHHHHCCCCEEEEeeCCCCccccCHHHHHHHHHHHHhhcCceEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence            34799999999999999999998886544332211111223444444432244443211  2567789999999998887


Q ss_pred             eccCc-hH-HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE--
Q 015894          192 FASAS-ES-FSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL--  267 (398)
Q Consensus       192 ~~~~S-d~-~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L--  267 (398)
                      ..-.. +- +.+..-+.+.    +...++++.+++.|+.+..+++  +|. .   -+++.+.+.++.+.+++++.+.+  
T Consensus       169 ~lEt~~~~~~~~i~~~~~~----~~~l~~i~~a~~~Gi~v~~~~i--~Gl-g---et~e~~~~~l~~l~~l~~~~v~~~~  238 (350)
T 3t7v_A          169 YQETYDTELYRKLRVGQSF----DGRVNARRFAKQQGYCVEDGIL--TGV-G---NDIESTILSLRGMSTNDPDMVRVMT  238 (350)
T ss_dssp             CCBCSCHHHHHHHSTTCCH----HHHHHHHHHHHHHTCEEEEEEE--ESS-S---CCHHHHHHHHHHHHHTCCSEEEEEE
T ss_pred             eeecCCHHHHHHhCCCCCH----HHHHHHHHHHHHcCCeEccceE--eec-C---CCHHHHHHHHHHHHhCCCCEEEecc
Confidence            55543 32 2222223344    4455667889999999876666  553 1   25788889999999999987654  


Q ss_pred             ----ccCc----CcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCC-CC
Q 015894          268 ----GDTI----GVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKG-AS  338 (398)
Q Consensus       268 ----~DT~----G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~g-ra  338 (398)
                          ++|-    ...++.++.++++..|-.+|...|-.-.   .-++......|+.+||+.+.+++..--   .+.| ..
T Consensus       239 f~p~~gT~l~~~~~~~~~e~l~~ia~~Rl~lp~~~I~a~~---~~~g~~~~~~~l~~Gan~~~~~~~~~~---~~ag~~~  312 (350)
T 3t7v_A          239 FLPQEGTPLEGFRDKSNLSELKIISVLRLMFPKRLIPASL---DLEGIDGMVLRLNAGANIVTSILPPDS---QLEGVAN  312 (350)
T ss_dssp             CCCCTTSTTTTCCCCCCCCHHHHHHHHHHHSTTSBCEEEH---HHHHHHHHHHHHHTTCCEEEEECCSSC---CCCCSSC
T ss_pred             eeeCCCCcCccCCCCChHHHHHHHHHHHHhCCCcCccccc---cccChhHHHHHHhcCCceecCCCCCCC---CCCCCCC
Confidence                2331    2345678889999999888875444322   233446788999999999999987662   1112 11


Q ss_pred             -------CCccHHHHHHHHHhCCCCC
Q 015894          339 -------GNVATEDVVYMLNGLGVRT  357 (398)
Q Consensus       339 -------GNa~lE~vv~~L~~~Gi~t  357 (398)
                             ++.+.++++..++..|+.+
T Consensus       313 ~~~~~~~~~~~~~~~~~~i~~~G~~~  338 (350)
T 3t7v_A          313 YDRDLEERDRDIKSVVRRLEIMGMKP  338 (350)
T ss_dssp             TTTTCSSCCCCHHHHHHHHHHHTCEE
T ss_pred             CcccchhccCCHHHHHHHHHHcCCcc
Confidence                   3678999999999988743

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=98.29  E-value=5e-06  Score=79.93  Aligned_cols=176  Identities=16%  Similarity=0.169  Sum_probs=109.2

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcc--cCCC-----------CHHHHHHHHH---hc-cCCcEEEEeC-CH-
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWV--PQLA-----------DAKDVMAAIQ---NV-EGARFPVLTP-NL-  175 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~--p~~~-----------D~~~v~~~i~---~~-~~~~l~~l~~-n~-  175 (398)
                      ..+.+.-+++++.|.+.|+|.||+|.|.+.+..  |...           ..+.+++.++   +. +++.+..|+. |. 
T Consensus        30 dP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v  109 (271)
T 3nav_A           30 DPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAKTTPDICFELIAQIRARNPETPIGLLMYANLV  109 (271)
T ss_dssp             SSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTSCEEEEECHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHH
Confidence            346788899999999999999999988763211  1110           1223344444   22 5667776763 42 


Q ss_pred             --hh----HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHH
Q 015894          176 --KG----FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSK  249 (398)
Q Consensus       176 --~~----ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~  249 (398)
                        -+    ++.+.++|++.+-+.+-.            .    +...+.++.++++|+.+.. ++    .|   .++++.
T Consensus       110 ~~~g~~~f~~~~~~aGvdGvIipDlp------------~----ee~~~~~~~~~~~gl~~I~-lv----ap---~t~~er  165 (271)
T 3nav_A          110 YARGIDDFYQRCQKAGVDSVLIADVP------------T----NESQPFVAAAEKFGIQPIF-IA----PP---TASDET  165 (271)
T ss_dssp             HHTCHHHHHHHHHHHTCCEEEETTSC------------G----GGCHHHHHHHHHTTCEEEE-EE----CT---TCCHHH
T ss_pred             HHHhHHHHHHHHHHCCCCEEEECCCC------------H----HHHHHHHHHHHHcCCeEEE-EE----CC---CCCHHH
Confidence              12    567889999998884321            1    2245778899999998532 22    12   245666


Q ss_pred             HHHHHHHHHhCC-CCEEEEccCcCcCC--HHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHH-HHHhCCCEE
Q 015894          250 VAYVSKQLYDMG-CSEISLGDTIGVGT--PGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILA-SLQMGISTV  321 (398)
Q Consensus       250 l~~~a~~l~~~G-ad~I~L~DT~G~~~--P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANala-Al~aGa~~V  321 (398)
                      +..+++..  -| +..+.+.++.|...  |..+.++++.+|+.. +.|+.+    .+|........ ++.+||+.|
T Consensus       166 i~~i~~~~--~gfiY~vs~~GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~v----GfGIst~e~~~~~~~~gADgv  234 (271)
T 3nav_A          166 LRAVAQLG--KGYTYLLSRAGVTGAETKANMPVHALLERLQQFD-APPALL----GFGISEPAQVKQAIEAGAAGA  234 (271)
T ss_dssp             HHHHHHHC--CSCEEECCCC--------CCHHHHHHHHHHHHTT-CCCEEE----CSSCCSHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHC--CCeEEEEeccCCCCcccCCchhHHHHHHHHHHhc-CCCEEE----ECCCCCHHHHHHHHHcCCCEE
Confidence            65555431  12 23344567788764  778999999999876 356666    67777677777 899999855

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=98.23  E-value=6e-06  Score=79.21  Aligned_cols=174  Identities=18%  Similarity=0.193  Sum_probs=108.6

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcc--c--CC---------CCHHHHHHHH---Hhc-cCCcEEEEeC-CH-
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWV--P--QL---------ADAKDVMAAI---QNV-EGARFPVLTP-NL-  175 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~--p--~~---------~D~~~v~~~i---~~~-~~~~l~~l~~-n~-  175 (398)
                      ..+.+.-.++++.|.+.|+|.||+|.|.+.+..  |  |.         ...+.+++.+   |+. .++.+..++. |. 
T Consensus        28 dP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv  107 (267)
T 3vnd_A           28 DPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAGTTSSDCFDIITKVRAQHPDMPIGLLLYANLV  107 (267)
T ss_dssp             SSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCCEEEEECHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecCcHH
Confidence            456788899999999999999999987653211  1  00         0112333333   332 4566666664 53 


Q ss_pred             --hh----HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHH
Q 015894          176 --KG----FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSK  249 (398)
Q Consensus       176 --~~----ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~  249 (398)
                        -+    ++.+.++|++.+-+.+-.                ++...+.++.++++|+.+.. ++    .|   .++++.
T Consensus       108 ~~~g~e~f~~~~~~aGvdgvii~Dlp----------------~ee~~~~~~~~~~~gl~~i~-li----aP---~t~~er  163 (267)
T 3vnd_A          108 FANGIDEFYTKAQAAGVDSVLIADVP----------------VEESAPFSKAAKAHGIAPIF-IA----PP---NADADT  163 (267)
T ss_dssp             HHHCHHHHHHHHHHHTCCEEEETTSC----------------GGGCHHHHHHHHHTTCEEEC-EE----CT---TCCHHH
T ss_pred             HHhhHHHHHHHHHHcCCCEEEeCCCC----------------HhhHHHHHHHHHHcCCeEEE-EE----CC---CCCHHH
Confidence              12    567889999998885321                12345778899999998642 21    12   245566


Q ss_pred             HHHHHHHHHhCCCCEEE---EccCcCcCC--HHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHH-HHHhCCCEE
Q 015894          250 VAYVSKQLYDMGCSEIS---LGDTIGVGT--PGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILA-SLQMGISTV  321 (398)
Q Consensus       250 l~~~a~~l~~~Gad~I~---L~DT~G~~~--P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANala-Al~aGa~~V  321 (398)
                      +..+++    .+-.-|+   +..+.|...  |..+.++++.+|+... .|+.+    .+|........ ++.+||+.|
T Consensus       164 i~~i~~----~~~gfvY~vS~~GvTG~~~~~~~~~~~~v~~vr~~~~-~pv~v----GfGI~~~e~~~~~~~~gADgv  232 (267)
T 3vnd_A          164 LKMVSE----QGEGYTYLLSRAGVTGTESKAGEPIENILTQLAEFNA-PPPLL----GFGIAEPEQVRAAIKAGAAGA  232 (267)
T ss_dssp             HHHHHH----HCCSCEEESCCCCCC--------CHHHHHHHHHTTTC-CCEEE----CSSCCSHHHHHHHHHTTCSEE
T ss_pred             HHHHHH----hCCCcEEEEecCCCCCCccCCcHHHHHHHHHHHHhcC-CCEEE----ECCcCCHHHHHHHHHcCCCEE
Confidence            555544    3333344   466677663  6779999999998753 56776    77777666666 999999865

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=98.22  E-value=8.7e-06  Score=77.74  Aligned_cols=173  Identities=14%  Similarity=0.093  Sum_probs=110.6

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHH--------------------HHHHHHHhc-cCCcEEEEe-
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAK--------------------DVMAAIQNV-EGARFPVLT-  172 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~--------------------~v~~~i~~~-~~~~l~~l~-  172 (398)
                      .++.+...++++.|.++|+|.||+|.|.+.+.    .|..                    ++++.+++. +++.+..++ 
T Consensus        27 dp~~~~~~~~~~~l~~~GaD~ieig~P~sdp~----~DG~~i~~a~~~al~~G~~~~~~~~~v~~ir~~~~~~Pv~lm~y  102 (268)
T 1qop_A           27 DPGIEQSLKIIDTLIDAGADALELGVPFSDPL----ADGPTIQNANLRAFAAGVTPAQCFEMLAIIREKHPTIPIGLLMY  102 (268)
T ss_dssp             SSCHHHHHHHHHHHHHTTCSSEEEECCCSCCT----TCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSSSCEEEEEC
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEECCCCCCcc----CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEEc
Confidence            56678899999999999999999998765321    1211                    234444444 455655554 


Q ss_pred             CC-------HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCC
Q 015894          173 PN-------LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMV  245 (398)
Q Consensus       173 ~n-------~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~  245 (398)
                      .|       .+.++.+.++|++.+.+..-..                +.+.+.++.++++|+.+.. ++    .|.   +
T Consensus       103 ~n~v~~~g~~~~~~~~~~aGadgii~~d~~~----------------e~~~~~~~~~~~~g~~~i~-l~----~p~---t  158 (268)
T 1qop_A          103 ANLVFNNGIDAFYARCEQVGVDSVLVADVPV----------------EESAPFRQAALRHNIAPIF-IC----PPN---A  158 (268)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTCCEEEETTCCG----------------GGCHHHHHHHHHTTCEEEC-EE----CTT---C
T ss_pred             ccHHHHhhHHHHHHHHHHcCCCEEEEcCCCH----------------HHHHHHHHHHHHcCCcEEE-EE----CCC---C
Confidence            23       2457788999999887753321                3345677889999987632 11    232   4


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEccCcCcCCH--HHHHHHHHHHHhhCCCCeEEEEeCCccchHHHH-HHHHHHhCCCEE
Q 015894          246 PPSKVAYVSKQLYDMGCSEISLGDTIGVGTP--GTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSN-ILASLQMGISTV  321 (398)
Q Consensus       246 ~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P--~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~AN-alaAl~aGa~~V  321 (398)
                      +.+.+..+++..... +..+.+..+.|..+|  ..+.++++.+++.. +.+|.+    +.|...++ +..++.+||+.|
T Consensus       159 ~~~~i~~i~~~~~g~-v~~~s~~G~tG~~~~~~~~~~~~i~~lr~~~-~~pi~v----ggGI~t~e~~~~~~~agAD~v  231 (268)
T 1qop_A          159 DDDLLRQVASYGRGY-TYLLSRSGVTGAENRGALPLHHLIEKLKEYH-AAPALQ----GFGISSPEQVSAAVRAGAAGA  231 (268)
T ss_dssp             CHHHHHHHHHHCCSC-EEEESSSSCCCSSSCC--CCHHHHHHHHHTT-CCCEEE----ESSCCSHHHHHHHHHTTCSEE
T ss_pred             CHHHHHHHHhhCCCc-EEEEecCCcCCCccCCCchHHHHHHHHHhcc-CCcEEE----ECCCCCHHHHHHHHHcCCCEE
Confidence            566666665442211 223345567787544  55778899998865 456776    78888555 445599999855

>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0

Probab=98.15  E-value=8.3e-06  Score=74.33  Aligned_cols=170  Identities=14%  Similarity=0.118  Sum_probs=109.4

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-cCCcEEE---EeCCHhh-HHHHHHcCCCEE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-EGARFPV---LTPNLKG-FEAAVAAGAKEV  189 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~~~~l~~---l~~n~~~-ie~a~~~Gv~~v  189 (398)
                      ..+.++.+++++.|. .|++.||+|.+.+-      ....++++.+++. ++..+.+   +....+. ++.++++|++.|
T Consensus         9 ~~~~~~~~~~~~~~~-~~~diie~G~p~~~------~~g~~~i~~ir~~~~~~~i~~~~~~~~~~~~~~~~~~~~Gad~v   81 (211)
T 3f4w_A            9 ELTLPEAMVFMDKVV-DDVDIIEVGTPFLI------REGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYV   81 (211)
T ss_dssp             SCCHHHHHHHHHHHG-GGCSEEEECHHHHH------HHTTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEE
T ss_pred             CCCHHHHHHHHHHhh-cCccEEEeCcHHHH------hccHHHHHHHHHhCCCCEEEEEEEeccchHHHHHHHHhcCCCEE
Confidence            356788899999996 69999999974210      1112456666654 6665532   2233444 889999999999


Q ss_pred             EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcc
Q 015894          190 AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGD  269 (398)
Q Consensus       190 ~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~D  269 (398)
                      .+.....+               +.+.++++.++++|+.+.+.+.    +|    .++   .+.++.+.+.|++.|++. 
T Consensus        82 ~v~~~~~~---------------~~~~~~~~~~~~~g~~~~v~~~----~~----~t~---~~~~~~~~~~g~d~i~v~-  134 (211)
T 3f4w_A           82 TVLGVTDV---------------LTIQSCIRAAKEAGKQVVVDMI----CV----DDL---PARVRLLEEAGADMLAVH-  134 (211)
T ss_dssp             EEETTSCH---------------HHHHHHHHHHHHHTCEEEEECT----TC----SSH---HHHHHHHHHHTCCEEEEE-
T ss_pred             EEeCCCCh---------------hHHHHHHHHHHHcCCeEEEEec----CC----CCH---HHHHHHHHHcCCCEEEEc-
Confidence            98654321               3345678888899987753211    12    222   345667778999998773 


Q ss_pred             CcCc---CCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          270 TIGV---GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       270 T~G~---~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                       .|.   ..+....+.++.+++.+|..++.+    +.|....|+..++++||+.|=+
T Consensus       135 -~g~~g~~~~~~~~~~i~~l~~~~~~~~i~~----~gGI~~~~~~~~~~~Gad~vvv  186 (211)
T 3f4w_A          135 -TGTDQQAAGRKPIDDLITMLKVRRKARIAV----AGGISSQTVKDYALLGPDVVIV  186 (211)
T ss_dssp             -CCHHHHHTTCCSHHHHHHHHHHCSSCEEEE----ESSCCTTTHHHHHTTCCSEEEE
T ss_pred             -CCCcccccCCCCHHHHHHHHHHcCCCcEEE----ECCCCHHHHHHHHHcCCCEEEE
Confidence             221   111123467788888776667766    4555567888889999996643

>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*

Probab=98.07  E-value=0.00058  Score=66.47  Aligned_cols=230  Identities=16%  Similarity=0.111  Sum_probs=140.0

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe--CCHhhHHHHHHcCCCEEEEe
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT--PNLKGFEAAVAAGAKEVAIF  192 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~n~~~ie~a~~~Gv~~v~i~  192 (398)
                      .++.++.++.++.+.+.|+..|-++..-.|. .+ ..+..++++.+++. +..+..-.  .+.+.++...++|++.+.+.
T Consensus        83 ~ls~eei~~~i~~~~~~g~~~i~~~gGe~p~-~~-~~~~~~li~~i~~~-~~~i~~s~g~l~~e~l~~L~~ag~~~v~i~  159 (348)
T 3iix_A           83 RMTPEEIVERARLAVQFGAKTIVLQSGEDPY-XM-PDVISDIVKEIKKM-GVAVTLSLGEWPREYYEKWKEAGADRYLLR  159 (348)
T ss_dssp             BCCHHHHHHHHHHHHHTTCSEEEEEESCCGG-GT-THHHHHHHHHHHTT-SCEEEEECCCCCHHHHHHHHHHTCCEEECC
T ss_pred             eCCHHHHHHHHHHHHHCCCCEEEEEeCCCCC-cc-HHHHHHHHHHHHhc-CceEEEecCCCCHHHHHHHHHhCCCEEeee
Confidence            4789999999999999999998886533221 11 11233444444433 44443111  24677889999999999876


Q ss_pred             ccCc-hHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----
Q 015894          193 ASAS-ESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL----  267 (398)
Q Consensus       193 ~~~S-d~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L----  267 (398)
                      +-.. +-..+ .++...  ..+...+.++.+++.|+.+...++  +|.|..   +.+.+.+.++.+.++|++.+.+    
T Consensus       160 let~~~~~~~-~i~~~~--~~~~~~~~i~~~~~~Gi~v~~~~i--~G~p~e---t~e~~~~~~~~l~~l~~~~i~i~~~~  231 (348)
T 3iix_A          160 HETANPVLHR-KLRPDT--SFENRLNCLLTLKELGYETGAGSM--VGLPGQ---TIDDLVDDLLFLKEHDFDMVGIGPFI  231 (348)
T ss_dssp             CBCSCHHHHH-HHSTTS--CHHHHHHHHHHHHHTTCEEEECBE--ESCTTC---CHHHHHHHHHHHHHHTCSEECCEECC
T ss_pred             eeeCCHHHHH-HhCCCc--CHHHHHHHHHHHHHhCCeeccceE--EeCCCC---CHHHHHHHHHHHHhcCCCEEeeeeee
Confidence            5544 32222 232211  345556677889999998775554  665543   6788888899999989886543    


Q ss_pred             --ccCc----CcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccch---HHHHHHHHHHhCCCEEee--ccccCCCCCCC--
Q 015894          268 --GDTI----GVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQ---ALSNILASLQMGISTVDS--SVSGLGGCPYA--  334 (398)
Q Consensus       268 --~DT~----G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~Gl---A~ANalaAl~aGa~~VD~--Sv~GlGecp~a--  334 (398)
                        ++|-    ...++.++..+++.+|..+|...|-    .+.+.   .......|+.+||+.|-.  |..+.-+ .|.  
T Consensus       232 p~~gt~l~~~~~~~~~e~~~~~a~~R~~lp~~~i~----~~~~~~~~~~~~~~~~l~~Gan~i~~~~~~~~~~~-~~~~~  306 (348)
T 3iix_A          232 PHPDTPLANEKKGDFTLTLKMVALTRILLPDSNIP----ATTAMGTIVPGGREITLRCGANVIMPNWTPSPYRQ-LYQLY  306 (348)
T ss_dssp             CCTTSTTTTSCCCCHHHHHHHHHHHHHHSTTSBCB----CCHHHHHHSTTHHHHHHTTTCCEECCBCCCTTTGG-GCCSS
T ss_pred             cCCCCCcccCCCCCHHHHHHHHHHHHHHCCCCCch----hcchhhhcCHHHHHHHHhcCCcEEeCCCCchhccc-ccccC
Confidence              3332    2345688889999999888874222    22221   223356788999998863  3333211 000  


Q ss_pred             -C----CCCCCccHHHHHHHHHhCCCCCccC
Q 015894          335 -K----GASGNVATEDVVYMLNGLGVRTNVD  360 (398)
Q Consensus       335 -~----graGNa~lE~vv~~L~~~Gi~t~iD  360 (398)
                       .    +-.-.-+.++++..++..|+.+.++
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  337 (348)
T 3iix_A          307 PGKICVFEKDTACIPCVMKMIELLGRKPGRD  337 (348)
T ss_dssp             SCCTTTTSCTTCHHHHHHHHHHHTTCEECSS
T ss_pred             CCCcccCCCchhhHHHHHHHHHHcCCEeCCC
Confidence             0    1112345777888888777755443

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A

Probab=97.89  E-value=0.0002  Score=67.73  Aligned_cols=176  Identities=14%  Similarity=0.163  Sum_probs=108.2

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCc-----cc--------CCCCHHHH---HHHHHhccCCcEEEEeC-CH--
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKW-----VP--------QLADAKDV---MAAIQNVEGARFPVLTP-NL--  175 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~-----~p--------~~~D~~~v---~~~i~~~~~~~l~~l~~-n~--  175 (398)
                      .++.+...++++.|.+.|++.||+|.+.+.+.     ++        .-.+.+..   .+.+++..++.+..+.. |.  
T Consensus        28 ~~~~~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~~~~~~~i~~ir~~~~~Pv~~m~~~~~~~  107 (262)
T 1rd5_A           28 DPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIM  107 (262)
T ss_dssp             SSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCEEEECCSHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecCcHHH
Confidence            34568889999999999999999997654210     00        00123323   33444444555555543 42  


Q ss_pred             -hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHH
Q 015894          176 -KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVS  254 (398)
Q Consensus       176 -~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a  254 (398)
                       .+++.+.++|++.|.+..-..                +.+.+.++.++++|+.+...++     |   .++.+.+..+.
T Consensus       108 ~~~~~~a~~aGadgv~v~d~~~----------------~~~~~~~~~~~~~g~~~i~~~a-----~---~t~~e~~~~~~  163 (262)
T 1rd5_A          108 FRSLAKMKEAGVHGLIVPDLPY----------------VAAHSLWSEAKNNNLELVLLTT-----P---AIPEDRMKEIT  163 (262)
T ss_dssp             SCCTHHHHHTTCCEEECTTCBT----------------TTHHHHHHHHHHTTCEECEEEC-----T---TSCHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEcCCCh----------------hhHHHHHHHHHHcCCceEEEEC-----C---CCCHHHHHHHH
Confidence             256779999999988743211                2345677888999988542222     2   23455544443


Q ss_pred             HHHHhCCCCEEEE---ccCcCc--CCHHHHHHHHHHHHhhCCCCeEEEEeCCccchH-HHHHHHHHHhCCCEEee
Q 015894          255 KQLYDMGCSEISL---GDTIGV--GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQA-LSNILASLQMGISTVDS  323 (398)
Q Consensus       255 ~~l~~~Gad~I~L---~DT~G~--~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA-~ANalaAl~aGa~~VD~  323 (398)
                      .    .+.+.+++   ..+.|.  ..|....++++.+++... +||.+    +.|.. ..|+.+.+.+||+.|-+
T Consensus       164 ~----~~~g~v~~~s~~G~tG~~~~~~~~~~~~i~~v~~~~~-~pI~v----gGGI~~~e~~~~~~~~GAdgvvV  229 (262)
T 1rd5_A          164 K----ASEGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVTN-KPVAV----GFGISKPEHVKQIAQWGADGVII  229 (262)
T ss_dssp             H----HCCSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHCS-SCEEE----ESCCCSHHHHHHHHHTTCSEEEE
T ss_pred             h----cCCCeEEEecCCCCCCCCcCCCchHHHHHHHHHhhcC-CeEEE----ECCcCCHHHHHHHHHcCCCEEEE
Confidence            3    33333433   344555  334567788999988753 46666    78888 67777778899997653

>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster, transferase; HET: SAM DTB; 3.40A {Escherichia coli} SCOP: c.1.28.1

Probab=97.71  E-value=0.0054  Score=60.51  Aligned_cols=218  Identities=15%  Similarity=0.060  Sum_probs=139.3

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCC-CCCcccCCCCHHHHHHHHHhc--cCCcEEEEeC---CHhhHHHHHHcCCCE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFV-SPKWVPQLADAKDVMAAIQNV--EGARFPVLTP---NLKGFEAAVAAGAKE  188 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~-~~~~~p~~~D~~~v~~~i~~~--~~~~l~~l~~---n~~~ie~a~~~Gv~~  188 (398)
                      .++.++.++.++.+.+.|+..|-++... .|.    ..+.+.+.+.++.+  .+..+. +..   +.+.++...++|++.
T Consensus        98 ~~s~eei~~~~~~~~~~g~~~i~~~gg~~~p~----~~~~~~l~~ll~~ik~~g~~i~-~t~G~l~~e~l~~L~~aGvd~  172 (369)
T 1r30_A           98 LMEVEQVLESARKAKAAGSTRFCMGAAWKNPH----ERDMPYLEQMVQGVKAMGLEAC-MTLGTLSESQAQRLANAGLDY  172 (369)
T ss_dssp             CCCHHHHHHHHHHHHHTTCSEEEEEECCSSCC----TTTHHHHHHHHHHHHHTTSEEE-EECSSCCHHHHHHHHHHCCCE
T ss_pred             cCCHHHHHHHHHHHHHcCCcEEEEEeCCCCCC----cCCHHHHHHHHHHHHHcCCeEE-EecCCCCHHHHHHHHHCCCCE
Confidence            4789999999999999999998886432 121    12344455555432  244543 332   456788889999999


Q ss_pred             EEEeccCchHHHhhhcC-CCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCC--CCEE
Q 015894          189 VAIFASASESFSKSNIN-CTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMG--CSEI  265 (398)
Q Consensus       189 v~i~~~~Sd~~~~~~~~-~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~G--ad~I  265 (398)
                      +.+-+..++-..+...+ .+.+    ...+.++.+++.|+.+...++  +|. .   -+.+.+.+.++.+.+++  ++.|
T Consensus       173 v~i~les~~e~~~~i~~~~~~~----~~l~~i~~a~~~Gi~v~~~~I--~Gl-~---et~ed~~~~l~~l~~l~~~~~~i  242 (369)
T 1r30_A          173 YNHNLDTSPEFYGNIITTRTYQ----ERLDTLEKVRDAGIKVCSGGI--VGL-G---ETVKDRAGLLLQLANLPTPPESV  242 (369)
T ss_dssp             EECCCBSCHHHHHHHCCSSCHH----HHHHHHHHHHHHHCEEECCEE--ECS-S---CCHHHHHHHHHHHHSSSSCCSEE
T ss_pred             EeecCcCCHHHHHHhCCCCCHH----HHHHHHHHHHHcCCeeeeeeE--eeC-C---CCHHHHHHHHHHHHhhcCCCCEE
Confidence            99876666544333222 2444    445566778888998765544  443 1   25788889999999988  7766


Q ss_pred             EE------ccC----cCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCcc-chHHHHHHHHHHhCCCEEeeccccCCCCCCC
Q 015894          266 SL------GDT----IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTY-GQALSNILASLQMGISTVDSSVSGLGGCPYA  334 (398)
Q Consensus       266 ~L------~DT----~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~-GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a  334 (398)
                      .+      ++|    ....++.++.++++..+..+|..  .+|.-.-. .+.-.....++.+||+.+-   .  |+ .|.
T Consensus       243 ~~~~l~p~~gT~l~~~~~~~~~~~~~~~~~~r~~l~~~--~i~i~~~~~~l~~~~~~~~l~~Gan~~~---~--g~-~~~  314 (369)
T 1r30_A          243 PINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTS--YVRLSAGREQMNEQTQAMCFMAGANSIF---Y--GC-KLL  314 (369)
T ss_dssp             EEEECCCCTTSTTSSCCCCCHHHHHHHHHHHHHHCTTS--EEEEESSGGGSCHHHHHHHHHHTCCEEE---C--SS-BSS
T ss_pred             EeeeeeecCCCcCCCCCCCCHHHHHHHHHHHHHhCCCC--ceEeecchhhcChHHHHHHhhCCCceEE---e--CC-eee
Confidence            54      333    12345688889999999888863  33322111 1223345668899999432   2  22 111


Q ss_pred             CCCCCCccHHHHHHHHHhCCCCC
Q 015894          335 KGASGNVATEDVVYMLNGLGVRT  357 (398)
Q Consensus       335 ~graGNa~lE~vv~~L~~~Gi~t  357 (398)
                        .++|...++.+..+++.|..+
T Consensus       315 --t~~~~~~~~~~~~i~~~g~~~  335 (369)
T 1r30_A          315 --TTPNPEEDKDLQLFRKLGLNP  335 (369)
T ss_dssp             --SSBCCCHHHHHHHHHHTTCCS
T ss_pred             --CCCCCCHHHHHHHHHHcCCCe
Confidence              346788999999999988754

>3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti}

Probab=97.46  E-value=0.0047  Score=62.89  Aligned_cols=209  Identities=12%  Similarity=0.052  Sum_probs=125.2

Q ss_pred             cEEEeCCCcccCCCCCC-CCCHHHHHHHHHHH-HhcCCCE--EEEecCCC-C-CcccCCCCHHHHHHHHHhccCCcEEEE
Q 015894           98 VKIVEVGPRDGLQNEKN-IVPAVVKVELIKLL-VSSGLAV--VEATSFVS-P-KWVPQLADAKDVMAAIQNVEGARFPVL  171 (398)
Q Consensus        98 I~i~D~TLRDG~Q~~~~-~~~~~~k~~ia~~L-~~aGv~~--IEvG~~~~-~-~~~p~~~D~~~v~~~i~~~~~~~l~~l  171 (398)
                      ..|+.+|-....|.-|. .++.+....++..+ .++||+.  |=++.... | .|  |..++++-++.            
T Consensus        47 PVIIe~t~~qv~~~gGYtG~~p~~f~~~V~~~A~~~~vPv~pV~LhlDHg~~~~w--~~~~~~~am~~------------  112 (450)
T 3txv_A           47 PVLIEATCNQVNQDGGYTGMTPEDFTRFVGAIADRIEFPREKILLGGDHLGPNPW--KHLPADEAMAK------------  112 (450)
T ss_dssp             CEEEEEETTTSCTTCTTTTCCHHHHHHHHHHHHHHTTCCGGGEEEEEEEESSGGG--TTSCHHHHHHH------------
T ss_pred             CEEEEcChhhHhhcCCCCCCCHHHHHHHHHHHHHHcCcCcccEEEECCCCCCccc--ccccHHHHHHH------------
Confidence            34555665544443221 35555555555544 5567774  44432211 1 12  11233332222            


Q ss_pred             eCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEE-EEeeeecCCCC--------
Q 015894          172 TPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRG-YLSCVVGCPVE--------  242 (398)
Q Consensus       172 ~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~-~l~~~fg~~~~--------  242 (398)
                        ..+.+..++++|...|.+=.|..+.  +.|...|.+-..++..+++++|.+.+..+.+ .+.++.|.++.        
T Consensus       113 --a~e~i~~aI~AGFtSVMiD~S~~p~--eeNi~lt~evva~rtaeL~~~A~~~~~~~g~~e~~yviGtEvpvpGGa~~~  188 (450)
T 3txv_A          113 --AEAMITAYAKAGFTKLHLDTSMGCA--GEPTALPDATTAARAARLAAVAEDAVGGRGGVLPVYIIGTEVPIPGGALEE  188 (450)
T ss_dssp             --HHHHHHHHHTTTCCEEEECCCBCCS--SSCSBCCHHHHHHHHHHHHHHHHHTC------CCEEEEECC----------
T ss_pred             --HHHHHHHHHHcCCCEEEECCCCCch--hhccchhHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeeeecCCCCccccc
Confidence              2346789999999999985554442  5678889999999999999999987554421 23444566441        


Q ss_pred             ----CCCCHHHHHHHHHH----HHhCCCC-----EEEEccCcCcCCH-----HHHHHHHHHHHhhCCCCe-EEEEeCCcc
Q 015894          243 ----GMVPPSKVAYVSKQ----LYDMGCS-----EISLGDTIGVGTP-----GTVIPMLEAVLDAVPVDK-LAVHFHDTY  303 (398)
Q Consensus       243 ----~r~~~~~l~~~a~~----l~~~Gad-----~I~L~DT~G~~~P-----~~v~~lv~~l~~~~p~~~-l~~H~Hnd~  303 (398)
                          .-++|+...++++.    +.+.|++     .+.|+=..|+..-     .-=.+.++.|++.+++.| |.+|+|++.
T Consensus       189 ~~~~~~T~PeeA~~fv~~~~~~f~~~gld~~w~~v~~lvVqpGt~f~~~~v~~y~~e~~~~L~~~v~~~P~LVlhghStD  268 (450)
T 3txv_A          189 LDTLEVTAPEAAIETVRVHRAAFEEAGAAGAFSRVVGAVVQPGVEFGNENVIAYDRARAEKLSATLGQLHGMVFEAHSTD  268 (450)
T ss_dssp             ---CCCCCHHHHHHHHHHHHHHHHHHTCHHHHTTEEEEECCCSCEECSSCEECCCTTTTSHHHHGGGTSTTCEEEESCCT
T ss_pred             cccCCCCCHHHHHHHHHHHHHHHHHhCcccccCceeEEEecCCcccCCCCCCCCCHHHHHHHHHHhccCCCEEEecCCCC
Confidence                25788887776654    4455663     3455555554431     100113444454444445 999999999


Q ss_pred             chHHHHHHHHHHhCCCEEeec
Q 015894          304 GQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       304 GlA~ANalaAl~aGa~~VD~S  324 (398)
                      |..-.+...+++.|+..+++.
T Consensus       269 y~~~e~l~~~V~~GiaklNVg  289 (450)
T 3txv_A          269 YQTPDALRELVADGFAILKVG  289 (450)
T ss_dssp             TCCHHHHHHHHHTTEEEEEEC
T ss_pred             CCCHHHHHHHHHcCCcEEEEC
Confidence            999999999999999998873

>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}

Probab=97.44  E-value=0.00095  Score=63.38  Aligned_cols=174  Identities=13%  Similarity=0.084  Sum_probs=108.6

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCc--cc--CC---------CCHHHHHHHHHhcc-CCcEEEEeC-CH---h
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKW--VP--QL---------ADAKDVMAAIQNVE-GARFPVLTP-NL---K  176 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~--~p--~~---------~D~~~v~~~i~~~~-~~~l~~l~~-n~---~  176 (398)
                      .-+.+.-+++++.|.+.|.|.||+|.|.+.+.  .|  |-         .+.+.+++.++++. .+.+..|+. |.   .
T Consensus        24 ~P~~~~t~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~g~~~~~~~~~~~~~r~~~Pivlm~Y~N~i~~~  103 (252)
T 3tha_A           24 YPNLQTSEAFLQRLDQSPIDILELGVAYSDPIADGEIIADAAKIALDQGVDIHSVFELLARIKTKKALVFMVYYNLIFSY  103 (252)
T ss_dssp             SSCHHHHHHHHHTGGGSSCSEEEEECCCSCCCSCCCHHHHHHHHHHHTTCCHHHHHHHHHHCCCSSEEEEECCHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCcHHHHHHHHHHHHCCCCHHHHHHHHHHHhcCCCEEEEeccCHHHHh
Confidence            35678889999999999999999999876321  12  10         12345666666543 345555553 52   2


Q ss_pred             h----HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH
Q 015894          177 G----FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAY  252 (398)
Q Consensus       177 ~----ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~  252 (398)
                      |    ++.+.++|++.+-+.+-.            .    +...+..+.++++|+.... ++    .|   .++++.+..
T Consensus       104 G~e~F~~~~~~aGvdG~IipDLP------------~----eE~~~~~~~~~~~Gl~~I~-lv----aP---~t~~eRi~~  159 (252)
T 3tha_A          104 GLEKFVKKAKSLGICALIVPELS------------F----EESDDLIKECERYNIALIT-LV----SV---TTPKERVKK  159 (252)
T ss_dssp             CHHHHHHHHHHTTEEEEECTTCC------------G----GGCHHHHHHHHHTTCEECE-EE----ET---TSCHHHHHH
T ss_pred             hHHHHHHHHHHcCCCEEEeCCCC------------H----HHHHHHHHHHHHcCCeEEE-Ee----CC---CCcHHHHHH
Confidence            4    356788999988875321            1    2235667889999998642 22    12   234555554


Q ss_pred             HHHHHHhCCCCEEEEcc---CcCcCCH--HHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894          253 VSKQLYDMGCSEISLGD---TIGVGTP--GTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       253 ~a~~l~~~Gad~I~L~D---T~G~~~P--~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                      ++    +.+-.-||+..   +.|.-.+  ..+.++++.+|+.. +.|+.+    -+|.......+++..+||.|
T Consensus       160 ia----~~a~gFiY~Vs~~GvTG~~~~~~~~~~~~v~~vr~~~-~~Pv~v----GfGIst~e~a~~~~~~ADGV  224 (252)
T 3tha_A          160 LV----KHAKGFIYLLASIGITGTKSVEEAILQDKVKEIRSFT-NLPIFV----GFGIQNNQDVKRMRKVADGV  224 (252)
T ss_dssp             HH----TTCCSCEEEECCSCSSSCSHHHHHHHHHHHHHHHTTC-CSCEEE----ESSCCSHHHHHHHTTTSSEE
T ss_pred             HH----HhCCCeEEEEecCCCCCcccCCCHHHHHHHHHHHHhc-CCcEEE----EcCcCCHHHHHHHHhcCCEE
Confidence            44    34434455554   5566543  45889999999875 356666    45666666666666677644

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=97.44  E-value=0.0019  Score=60.58  Aligned_cols=151  Identities=23%  Similarity=0.157  Sum_probs=104.6

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEEE-eCCHhhHHHHHHcCCCEEEEec
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPVL-TPNLKGFEAAVAAGAKEVAIFA  193 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l-~~n~~~ie~a~~~Gv~~v~i~~  193 (398)
                      -+.++-++++++|.+.|++.||+++-. |       +..+.++.++ +.++..+.+= +.+.++++.++++|++.|..-.
T Consensus        43 ~~~~~a~~~a~al~~gGi~~iEvt~~t-~-------~a~e~I~~l~~~~~~~~iGaGTVlt~~~a~~Ai~AGA~fIvsP~  114 (232)
T 4e38_A           43 DNAEDIIPLGKVLAENGLPAAEITFRS-D-------AAVEAIRLLRQAQPEMLIGAGTILNGEQALAAKEAGATFVVSPG  114 (232)
T ss_dssp             SSGGGHHHHHHHHHHTTCCEEEEETTS-T-------THHHHHHHHHHHCTTCEEEEECCCSHHHHHHHHHHTCSEEECSS
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEeCCC-C-------CHHHHHHHHHHhCCCCEEeECCcCCHHHHHHHHHcCCCEEEeCC
Confidence            345677999999999999999998642 2       3445666666 4676544432 2468899999999999886311


Q ss_pred             cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCc
Q 015894          194 SASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGV  273 (398)
Q Consensus       194 ~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~  273 (398)
                        .+                  .++++++++.|+.+...           -.+++++.    ++.++|+|.|.+      
T Consensus       115 --~~------------------~~vi~~~~~~gi~~ipG-----------v~TptEi~----~A~~~Gad~vK~------  153 (232)
T 4e38_A          115 --FN------------------PNTVRACQEIGIDIVPG-----------VNNPSTVE----AALEMGLTTLKF------  153 (232)
T ss_dssp             --CC------------------HHHHHHHHHHTCEEECE-----------ECSHHHHH----HHHHTTCCEEEE------
T ss_pred             --CC------------------HHHHHHHHHcCCCEEcC-----------CCCHHHHH----HHHHcCCCEEEE------
Confidence              11                  35678888999987522           13566544    356799999876      


Q ss_pred             CCHHHH---HHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCE
Q 015894          274 GTPGTV---IPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGIST  320 (398)
Q Consensus       274 ~~P~~v---~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~  320 (398)
                       .|.+.   .++++.++..+|++++-.    +=|....|+-..+++|+..
T Consensus       154 -FPa~~~gG~~~lkal~~p~p~ip~~p----tGGI~~~n~~~~l~aGa~~  198 (232)
T 4e38_A          154 -FPAEASGGISMVKSLVGPYGDIRLMP----TGGITPSNIDNYLAIPQVL  198 (232)
T ss_dssp             -CSTTTTTHHHHHHHHHTTCTTCEEEE----BSSCCTTTHHHHHTSTTBC
T ss_pred             -CcCccccCHHHHHHHHHHhcCCCeee----EcCCCHHHHHHHHHCCCeE
Confidence             33221   378899998888777664    4455567889999999853

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A

Probab=97.43  E-value=0.011  Score=53.16  Aligned_cols=155  Identities=17%  Similarity=0.182  Sum_probs=102.5

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh-cc-CCcEEE-EeCCHhhHHHHHHcCCCEEEEe
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN-VE-GARFPV-LTPNLKGFEAAVAAGAKEVAIF  192 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~-~~-~~~l~~-l~~n~~~ie~a~~~Gv~~v~i~  192 (398)
                      .+.++-.++++.+.+.|++.||+.+-. +       +..+.++.+|+ .+ +..+.+ .+.+.++++.+.+.|+|.| +.
T Consensus        19 ~~~~~~~~~~~~~~~~G~~~iev~~~~-~-------~~~~~i~~ir~~~~~~~~ig~~~v~~~~~~~~a~~~Gad~i-v~   89 (205)
T 1wa3_A           19 NSVEEAKEKALAVFEGGVHLIEITFTV-P-------DADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFI-VS   89 (205)
T ss_dssp             SSHHHHHHHHHHHHHTTCCEEEEETTS-T-------THHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCSEE-EC
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEeCCC-h-------hHHHHHHHHHHHCCCCcEEEecccCCHHHHHHHHHcCCCEE-Ec
Confidence            467778899999999999999997642 1       23445666664 34 444444 3467888999999999999 43


Q ss_pred             ccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcC
Q 015894          193 ASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIG  272 (398)
Q Consensus       193 ~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G  272 (398)
                      ...           +        .++++++++.|+.+.+.+           .++++    +..+.++|+|.|.+-..  
T Consensus        90 ~~~-----------~--------~~~~~~~~~~g~~vi~g~-----------~t~~e----~~~a~~~Gad~vk~~~~--  133 (205)
T 1wa3_A           90 PHL-----------D--------EEISQFCKEKGVFYMPGV-----------MTPTE----LVKAMKLGHTILKLFPG--  133 (205)
T ss_dssp             SSC-----------C--------HHHHHHHHHHTCEEECEE-----------CSHHH----HHHHHHTTCCEEEETTH--
T ss_pred             CCC-----------C--------HHHHHHHHHcCCcEECCc-----------CCHHH----HHHHHHcCCCEEEEcCc--
Confidence            221           1        246678888999875311           23444    44567899998876321  


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894          273 VGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD  322 (398)
Q Consensus       273 ~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD  322 (398)
                        .+. -.++++.+++.+|++++..=+--+    ..|+...+++|++.|-
T Consensus       134 --~~~-g~~~~~~l~~~~~~~pvia~GGI~----~~~~~~~~~~Ga~~v~  176 (205)
T 1wa3_A          134 --EVV-GPQFVKAMKGPFPNVKFVPTGGVN----LDNVCEWFKAGVLAVG  176 (205)
T ss_dssp             --HHH-HHHHHHHHHTTCTTCEEEEBSSCC----TTTHHHHHHHTCSCEE
T ss_pred             --ccc-CHHHHHHHHHhCCCCcEEEcCCCC----HHHHHHHHHCCCCEEE
Confidence              112 235677777777667776655443    2577888899998654

>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1

Probab=97.23  E-value=0.074  Score=51.02  Aligned_cols=203  Identities=14%  Similarity=0.082  Sum_probs=116.0

Q ss_pred             EEEeCCC---cccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCC-CCCcccC--CCCHHHHHHHHHhcc--CCcEEE
Q 015894           99 KIVEVGP---RDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFV-SPKWVPQ--LADAKDVMAAIQNVE--GARFPV  170 (398)
Q Consensus        99 ~i~D~TL---RDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~-~~~~~p~--~~D~~~v~~~i~~~~--~~~l~~  170 (398)
                      -|+.+|+   =||++    .++.+..++.++.+.+.|.+.|++|.-. .|...|.  -++.+.+...++.+.  ++.++.
T Consensus        10 gilN~TpDSFsdgg~----~~~~~~a~~~a~~~v~~GAdiIDIGgestrpga~~v~~~eE~~Rv~pvi~~l~~~~~piSI   85 (280)
T 1eye_A           10 GVLNVTDDSFSDGGC----YLDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQGITVSI   85 (280)
T ss_dssp             EEEECSCCTTCSSCC----CCSHHHHHHHHHHHHHTTCSEEEEECC--------------HHHHHHHHHHHHHTTCCEEE
T ss_pred             EEEeCCCCCcCCCcc----cCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCCHHHHHHHHHHHHHHhhcCCCEEEE
Confidence            3555555   45544    4688999999999999999999999632 2321111  112222333333332  666777


Q ss_pred             EeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC-----C
Q 015894          171 LTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGM-----V  245 (398)
Q Consensus       171 l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r-----~  245 (398)
                      =+.+.+-+++|+++|++.|.=.....         .        ..++.+.++++|..+.  ++..-|.|..-.     +
T Consensus        86 DT~~~~va~aAl~aGa~iINdvsg~~---------~--------d~~m~~~~a~~~~~vV--lmh~~G~p~tm~~~~~~y  146 (280)
T 1eye_A           86 DTMRADVARAALQNGAQMVNDVSGGR---------A--------DPAMGPLLAEADVPWV--LMHWRAVSADTPHVPVRY  146 (280)
T ss_dssp             ECSCHHHHHHHHHTTCCEEEETTTTS---------S--------CTTHHHHHHHHTCCEE--EECCCCSCTTCTTSCCCC
T ss_pred             eCCCHHHHHHHHHcCCCEEEECCCCC---------C--------CHHHHHHHHHhCCeEE--EEcCCCCCcchhhcCcch
Confidence            67888899999999998775322110         0        0134566778888775  454444443211     1


Q ss_pred             -C-----HHHHHHHHHHHHhCCCC--EEEEccCcCcC-CHHHHHHHHHHHHhhC-CCCeEEEEeCC--------------
Q 015894          246 -P-----PSKVAYVSKQLYDMGCS--EISLGDTIGVG-TPGTVIPMLEAVLDAV-PVDKLAVHFHD--------------  301 (398)
Q Consensus       246 -~-----~~~l~~~a~~l~~~Gad--~I~L~DT~G~~-~P~~v~~lv~~l~~~~-p~~~l~~H~Hn--------------  301 (398)
                       +     .+++.+.++.+.++|++  .|.|==-+|.. +..+-.++++.+..-- ++.|+-+=.-|              
T Consensus       147 ~dv~~~v~~~l~~~i~~a~~~Gi~~~~IilDPg~Gf~k~~~~n~~ll~~l~~~~~~g~Pvl~G~Srksfi~~~~~~~~g~  226 (280)
T 1eye_A          147 GNVVAEVRADLLASVADAVAAGVDPARLVLDPGLGFAKTAQHNWAILHALPELVATGIPVLVGASRKRFLGALLAGPDGV  226 (280)
T ss_dssp             SSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTHHHHHTTSSCBEECCTTCHHHHHHTCCSSSC
T ss_pred             hHHHHHHHHHHHHHHHHHHHcCCChhhEEEECCCCcccCHHHHHHHHHHHHHhhcCCCCEEEEecchHHHHhhhccccCC
Confidence             1     56777788888999987  45443233332 3456666666665321 33343331111              


Q ss_pred             ------ccchHHHHHHHHHHhCCCEEeec
Q 015894          302 ------TYGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       302 ------d~GlA~ANalaAl~aGa~~VD~S  324 (398)
                            ..+.-.+-+..|+..|+++|.+.
T Consensus       227 ~~~~~~R~~~t~a~~~~a~~~Ga~Ivrvh  255 (280)
T 1eye_A          227 MRPTDGRDTATAVISALAALHGAWGVRVH  255 (280)
T ss_dssp             CCCGGGGHHHHHHHHHHHHHTTCSEEEES
T ss_pred             CCCcccchHHHHHHHHHHHHcCCCEEEeC
Confidence                  12223555667788888877653

>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*

Probab=97.17  E-value=0.015  Score=57.06  Aligned_cols=191  Identities=16%  Similarity=0.176  Sum_probs=128.0

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH----hccCCcEEEEe---CCHhhHHHHHHcCCC
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ----NVEGARFPVLT---PNLKGFEAAVAAGAK  187 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~----~~~~~~l~~l~---~n~~~ie~a~~~Gv~  187 (398)
                      ....+....++++-.+.+-+.|=-.+...-++.    ..+.+...++    ...++.+....   .+.+.+..++++|..
T Consensus        25 v~n~e~~~Ail~AAee~~sPvIlq~s~g~~~y~----g~~~~~~~v~~aa~~~~~VPValHlDHg~~~e~i~~ai~~GFt  100 (323)
T 2isw_A           25 VNNMEQIQGIMKAVVQLKSPVILQCSRGALKYS----DMIYLKKLCEAALEKHPDIPICIHLDHGDTLESVKMAIDLGFS  100 (323)
T ss_dssp             CCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHT----TTHHHHHHHHHHHHHCTTSCEEEEEEEECSHHHHHHHHHTTCS
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEECChhHHHhC----CHHHHHHHHHHHHHhcCCCcEEEECCCCCCHHHHHHHHHcCCC
Confidence            567888889999999999998765543221111    1122222222    21445554433   467889999999999


Q ss_pred             EEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC-----CCCCHHHHHHHHHHHHhCCC
Q 015894          188 EVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE-----GMVPPSKVAYVSKQLYDMGC  262 (398)
Q Consensus       188 ~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~-----~r~~~~~l~~~a~~l~~~Ga  262 (398)
                      .|.+=.|          ..+.+|+++.-++++++|++.|+.|++.|-..-|.++.     ..++|+...++++   +.|+
T Consensus       101 SVMiDgS----------~~p~eENi~~Tk~vv~~ah~~gvsVEaELG~vgg~Ed~v~~~~~yTdPeea~~Fv~---~Tgv  167 (323)
T 2isw_A          101 SVMIDAS----------HHPFDENVRITKEVVAYAHARSVSVEAELGTLGGIEEDVQNTVQLTEPQDAKKFVE---LTGV  167 (323)
T ss_dssp             EEEECCT----------TSCHHHHHHHHHHHHHHHHTTTCEEEEEESCC----------CCCCCHHHHHHHHH---HHCC
T ss_pred             eEEecCC----------CCCHHHHHHHHHHHHHHHHHcCCeEEEEeCCccCCccCcccccccCCHHHHHHHHH---HHCC
Confidence            8876332          23678999999999999999999999888876544431     2488998888776   4699


Q ss_pred             CEEEE--ccCcCcCC-HHHHH-----HHHHHHHhhCCCCeEEEEe-------------------CCccchHHHHHHHHHH
Q 015894          263 SEISL--GDTIGVGT-PGTVI-----PMLEAVLDAVPVDKLAVHF-------------------HDTYGQALSNILASLQ  315 (398)
Q Consensus       263 d~I~L--~DT~G~~~-P~~v~-----~lv~~l~~~~p~~~l~~H~-------------------Hnd~GlA~ANalaAl~  315 (398)
                      |.+.+  .-+=|.-. |....     ++++.+++.++ +||.+|+                   +++.|........|++
T Consensus       168 D~LAvaiGt~HG~Yk~~~~p~~~L~~~~L~~I~~~~~-vpLVlHGgSsvp~~~~~~~~~~gg~~~~~~Gvp~e~i~~ai~  246 (323)
T 2isw_A          168 DALAVAIGTSHGAYKFKSESDIRLAIDRVKTISDLTG-IPLVMHGSSSVPKDVKDMINKYGGKMPDAVGVPIESIVHAIG  246 (323)
T ss_dssp             SEEEECSSCCSSSBCCCC----CCCCHHHHHHHHHHC-SCEEECSCCCCCHHHHHHHHHTTCCCTTCBCCCHHHHHHHHH
T ss_pred             CEEEEecCccccccCCCCCcccccCHHHHHHHHHHhC-CCeEEECCCCCCHHHHHHHHHhccccccCCCCCHHHHHHHHH
Confidence            96544  34434332 22222     57777887774 6899999                   4488999999999999


Q ss_pred             hCCCEEee
Q 015894          316 MGISTVDS  323 (398)
Q Consensus       316 aGa~~VD~  323 (398)
                      .|+.-|+.
T Consensus       247 ~GV~KiNi  254 (323)
T 2isw_A          247 EGVCKINV  254 (323)
T ss_dssp             TTEEEEEE
T ss_pred             CCCeEEEE
Confidence            99876643

>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*

Probab=97.09  E-value=0.035  Score=52.74  Aligned_cols=190  Identities=14%  Similarity=0.064  Sum_probs=120.2

Q ss_pred             EEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe--C---
Q 015894           99 KIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT--P---  173 (398)
Q Consensus        99 ~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~---  173 (398)
                      ..+|-|+=      +-.-+.++..++++...+.|+..+-+    +|.|+|      ...+.++ -.++++.+.+  |   
T Consensus        45 ~~IDhTlL------~p~~t~~~I~~lc~eA~~~~~aaVCV----~p~~V~------~a~~~L~-gs~v~v~tVigFP~G~  107 (260)
T 3r12_A           45 SAIEHTNL------KPFATPDDIKKLCLEARENRFHGVCV----NPCYVK------LAREELE-GTDVKVVTVVGFPLGA  107 (260)
T ss_dssp             HHEEEEEC------CTTCCHHHHHHHHHHHHHTTCSEEEE----CGGGHH------HHHHHHT-TSCCEEEEEESTTTCC
T ss_pred             HhcCcccC------CCCCCHHHHHHHHHHHHhcCCcEEEE----CHHHHH------HHHHHhc-CCCCeEEEEecCCCCC
Confidence            35666661      22567888889999999999998887    344443      2223332 2346666544  2   


Q ss_pred             C-----HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHH
Q 015894          174 N-----LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPS  248 (398)
Q Consensus       174 n-----~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~  248 (398)
                      +     ....+.|++.|+++|.+.+.+....     .-+.+...+.+..+++.+.  |..+-  +....     +..+.+
T Consensus       108 ~~~~~Kv~Ea~~Ai~~GAdEIDmViNig~lk-----~g~~~~v~~eI~~v~~a~~--~~~lK--VIlEt-----~~Lt~e  173 (260)
T 3r12_A          108 NETRTKAHEAIFAVESGADEIDMVINVGMLK-----AKEWEYVYEDIRSVVESVK--GKVVK--VIIET-----CYLDTE  173 (260)
T ss_dssp             SCHHHHHHHHHHHHHHTCSEEEEECCHHHHH-----TTCHHHHHHHHHHHHHHTT--TSEEE--EECCG-----GGCCHH
T ss_pred             CcHHHHHHHHHHHHHcCCCEEEEEeehhhhc-----cccHHHHHHHHHHHHHhcC--CCcEE--EEEeC-----CCCCHH
Confidence            1     1356789999999999988754321     2256777888877777654  44443  22222     345788


Q ss_pred             HHHHHHHHHHhCCCCEEEEcc--CcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeecc
Q 015894          249 KVAYVSKQLYDMGCSEISLGD--TIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSV  325 (398)
Q Consensus       249 ~l~~~a~~l~~~Gad~I~L~D--T~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv  325 (398)
                      .+...++.+.++|+|.|--.-  ..|..+++++.-+-+.+..     ++++-.==-.- -...+++-+++||++|-+|.
T Consensus       174 ei~~A~~ia~eaGADfVKTSTGf~~~GAT~edV~lm~~~vg~-----~v~VKaAGGIr-t~~~al~mi~aGA~RiGtS~  246 (260)
T 3r12_A          174 EKIAACVISKLAGAHFVKTSTGFGTGGATAEDVHLMKWIVGD-----EMGVKASGGIR-TFEDAVKMIMYGADRIGTSS  246 (260)
T ss_dssp             HHHHHHHHHHHTTCSEEECCCSSSSCCCCHHHHHHHHHHHCT-----TSEEEEESSCC-SHHHHHHHHHTTCSEEEESC
T ss_pred             HHHHHHHHHHHhCcCEEEcCCCCCCCCCCHHHHHHHHHHhCC-----CceEEEeCCCC-CHHHHHHHHHcCCceeecch
Confidence            899999999999999886662  1245677777766555432     23333211111 12667777999999987663

>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A

Probab=97.09  E-value=0.034  Score=51.39  Aligned_cols=173  Identities=17%  Similarity=0.176  Sum_probs=102.0

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCC-Ccc----c-----------CCCCHHHHHHHHHhccCCcEEEEeC-C---
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSP-KWV----P-----------QLADAKDVMAAIQNVEGARFPVLTP-N---  174 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~-~~~----p-----------~~~D~~~v~~~i~~~~~~~l~~l~~-n---  174 (398)
                      .++.+.-.++++.+.+. ++.||++.|.+. ..-    +           .+....++++.+++..+..+..+.. |   
T Consensus        15 ~~~~~~~~~~a~~~~~~-ad~iel~~p~sdp~~DG~~~~~~~~~al~~g~~~~~~~~~i~~i~~~~~~pv~~~~~~~~~~   93 (248)
T 1geq_A           15 DPDKQSTLNFLLALDEY-AGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIY   93 (248)
T ss_dssp             SSCHHHHHHHHHHHGGG-BSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEEEEECHHHHH
T ss_pred             CCCHHHHHHHHHHHHHc-CCEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCCCEEEEeccchhh
Confidence            34557888999999999 999999976542 210    0           0001123444455444555665653 4   


Q ss_pred             ----HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHH
Q 015894          175 ----LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKV  250 (398)
Q Consensus       175 ----~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l  250 (398)
                          .+.++.++++|++.|.+..-..                +...++++.++++|..+...++     |   .++.+.+
T Consensus        94 ~~~~~~~~~~~~~~Gad~v~~~~~~~----------------~~~~~~~~~~~~~g~~~~~~i~-----~---~t~~e~~  149 (248)
T 1geq_A           94 RAGVRNFLAEAKASGVDGILVVDLPV----------------FHAKEFTEIAREEGIKTVFLAA-----P---NTPDERL  149 (248)
T ss_dssp             HHCHHHHHHHHHHHTCCEEEETTCCG----------------GGHHHHHHHHHHHTCEEEEEEC-----T---TCCHHHH
T ss_pred             hcCHHHHHHHHHHCCCCEEEECCCCh----------------hhHHHHHHHHHHhCCCeEEEEC-----C---CCHHHHH
Confidence                3578899999999999853211                1234667888899987653222     1   1233333


Q ss_pred             HHHHHHHHhCCCC-EEEEccCcCcC-----CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHH-HHHHHHHHhCCCEEe
Q 015894          251 AYVSKQLYDMGCS-EISLGDTIGVG-----TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQAL-SNILASLQMGISTVD  322 (398)
Q Consensus       251 ~~~a~~l~~~Gad-~I~L~DT~G~~-----~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~-ANalaAl~aGa~~VD  322 (398)
                      ..+.    +. ++ .|++....|..     .+....++++.+++... .+|.+    .-|... .|+...+.+||+.|-
T Consensus       150 ~~~~----~~-~d~~i~~~~~~G~~g~~~~~~~~~~~~i~~l~~~~~-~pi~~----~GGI~~~e~i~~~~~~Gad~vi  218 (248)
T 1geq_A          150 KVID----DM-TTGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRICR-NKVAV----GFGVSKREHVVSLLKEGANGVV  218 (248)
T ss_dssp             HHHH----HH-CSSEEEEECCC-------CCCHHHHHHHHHHHHHCS-SCEEE----ESCCCSHHHHHHHHHTTCSEEE
T ss_pred             HHHH----hc-CCCeEEEEECCccCCCCCCCChhHHHHHHHHHhhcC-CCEEE----EeecCCHHHHHHHHHcCCCEEE
Confidence            3332    22 45 66665554422     23455678888887653 34444    345555 677777789998664

>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}

Probab=97.08  E-value=0.069  Score=51.47  Aligned_cols=194  Identities=13%  Similarity=0.096  Sum_probs=120.6

Q ss_pred             cEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe--C--
Q 015894           98 VKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT--P--  173 (398)
Q Consensus        98 I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~--  173 (398)
                      ..++|-|+      .+-.-+.++..++++...+.|+..+-+-    |.|++      ...+.++. .++++...+  |  
T Consensus        59 a~~IDhTl------L~p~~T~~dI~~lc~eA~~~g~aaVCV~----P~~V~------~a~~~L~~-s~V~V~tVigFP~G  121 (288)
T 3oa3_A           59 AQIIDHTQ------LSLSATGSQIDVLCAEAKEYGFATVCVR----PDYVS------RAVQYLQG-TQVGVTCVIGFHEG  121 (288)
T ss_dssp             GGGEEEEC------CCTTCCHHHHHHHHHHHHHHTCSEEEEC----GGGHH------HHHHHTTT-SSCEEEEEESTTTS
T ss_pred             HHhcCccc------CCCCCCHHHHHHHHHHHHhcCCcEEEEC----HHHHH------HHHHHcCC-CCCeEEEEeCCCCC
Confidence            34667776      2235678888899999999999988873    43432      22223321 246666554  2  


Q ss_pred             -C-----HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCH
Q 015894          174 -N-----LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPP  247 (398)
Q Consensus       174 -n-----~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~  247 (398)
                       +     ...++.|++.|+++|.+.+.....     ..-+.+...+.+..+.+.|.+..++|    ...     .+..+.
T Consensus       122 ~~~~~~Kv~Ea~~Ai~~GAdEIDmVINig~l-----k~g~~~~v~~eI~~V~~a~~~~~lKV----IlE-----t~~Lt~  187 (288)
T 3oa3_A          122 TYSTDQKVSEAKRAMQNGASELDMVMNYPWL-----SEKRYTDVFQDIRAVRLAAKDAILKV----ILE-----TSQLTA  187 (288)
T ss_dssp             CSCHHHHHHHHHHHHHTTCSEEEEECCHHHH-----HTTCHHHHHHHHHHHHHHTTTSEEEE----ECC-----GGGCCH
T ss_pred             CCcHHHHHHHHHHHHHcCCCEEEEEeehhhh-----cCCcHHHHHHHHHHHHHHhcCCCceE----EEE-----CCCCCH
Confidence             1     235778999999999998765432     12356777888877777765432222    222     123567


Q ss_pred             HHHHHHHHHHHhCCCCEEEEcc--CcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeecc
Q 015894          248 SKVAYVSKQLYDMGCSEISLGD--TIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSV  325 (398)
Q Consensus       248 ~~l~~~a~~l~~~Gad~I~L~D--T~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv  325 (398)
                      +.+...++.+.++|+|.|--.-  +.|..+++++.-+-+.+ +..+. ++.+-.=--.- -...+++.+++||++|-+|.
T Consensus       188 eei~~A~~ia~eaGADfVKTSTGf~~~GAT~edv~lmr~~v-~~~g~-~v~VKAAGGIr-t~edAl~mi~aGA~RiGtS~  264 (288)
T 3oa3_A          188 DEIIAGCVLSSLAGADYVKTSTGFNGPGASIENVSLMSAVC-DSLQS-ETRVKASGGIR-TIEDCVKMVRAGAERLGASA  264 (288)
T ss_dssp             HHHHHHHHHHHHTTCSEEECCCSSSSCCCCHHHHHHHHHHH-HHSSS-CCEEEEESSCC-SHHHHHHHHHTTCSEEEESC
T ss_pred             HHHHHHHHHHHHcCCCEEEcCCCCCCCCCCHHHHHHHHHHH-HHhCC-CceEEEeCCCC-CHHHHHHHHHcCCceeehhh
Confidence            8888899999999999887662  23467788876554444 33221 23332211111 12778888999999876653

>2dqw_A Dihydropteroate synthase; dimer, structural genomics; 1.65A {Thermus thermophilus} PDB: 2dza_A* 2dzb_A*

Probab=97.07  E-value=0.042  Score=53.15  Aligned_cols=205  Identities=13%  Similarity=0.183  Sum_probs=109.7

Q ss_pred             cEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCC-CCCccc--CCCCHHHHHHHHHhcc--CCcEEEEe
Q 015894           98 VKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFV-SPKWVP--QLADAKDVMAAIQNVE--GARFPVLT  172 (398)
Q Consensus        98 I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~-~~~~~p--~~~D~~~v~~~i~~~~--~~~l~~l~  172 (398)
                      +-|+-+|. |-..--|..++.+..++.++.+.+.|.+.|++|.-. .|...+  .-++.+.+...++.+.  ++.++.=+
T Consensus        32 MGIlNvTP-DSFsdgg~~~~~~~a~~~a~~~v~~GAdIIDIGgeSTrPga~~v~~~eE~~Rv~pvI~~l~~~~vpiSIDT  110 (294)
T 2dqw_A           32 LGVLNLTP-DSFSDGGRYLDPERALERAREMVAEGADILDLGAESTRPGAAPVPVEEEKRRLLPVLEAVLSLGVPVSVDT  110 (294)
T ss_dssp             EEEEECCC--------------CCHHHHHHHHHHTCSEEEEECC-----------CCHHHHHHHHHHHHHTTCSCEEEEC
T ss_pred             EEEEeCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhCCCeEEEEC
Confidence            44666665 333322334567778889999999999999999733 232111  1112222333344333  56666666


Q ss_pred             CCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeee-cCCCCC----CCC-
Q 015894          173 PNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVV-GCPVEG----MVP-  246 (398)
Q Consensus       173 ~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~f-g~~~~~----r~~-  246 (398)
                      .+.+-+++|+++|++.|.   ++|-.               ...++.+.++++|..+.  ++..- |.|..-    .++ 
T Consensus       111 ~~~~Va~aAl~aGa~iIN---dVsg~---------------~d~~m~~v~a~~~~~vV--lmh~~eG~p~tm~~~~~y~d  170 (294)
T 2dqw_A          111 RKPEVAEEALKLGAHLLN---DVTGL---------------RDERMVALAARHGVAAV--VMHMPVPDPATMMAHARYRD  170 (294)
T ss_dssp             SCHHHHHHHHHHTCSEEE---CSSCS---------------CCHHHHHHHHHHTCEEE--EECCSSSCTTTGGGGCCCSS
T ss_pred             CCHHHHHHHHHhCCCEEE---ECCCC---------------CChHHHHHHHHhCCCEE--EEcCCCCCCccccccCcccc
Confidence            788889999999999664   22210               01244567778888764  44432 333210    111 


Q ss_pred             -----HHHHHHHHHHHHhCCCCEEEEccCcCcCC-HHHHHHHHHHHHhhC-CCCeEEEEeC---------------Cccc
Q 015894          247 -----PSKVAYVSKQLYDMGCSEISLGDTIGVGT-PGTVIPMLEAVLDAV-PVDKLAVHFH---------------DTYG  304 (398)
Q Consensus       247 -----~~~l~~~a~~l~~~Gad~I~L~DT~G~~~-P~~v~~lv~~l~~~~-p~~~l~~H~H---------------nd~G  304 (398)
                           .+++.+.++.+.++|++.|.|==-+|... ..+-.++++.+++.. ++.|+-+=.-               +-..
T Consensus       171 v~~ev~~~l~~~i~~a~~~Gi~~IilDPG~Gf~kt~~~n~~ll~~l~~~~~~g~Pvl~G~Srksfig~l~g~p~~~~R~~  250 (294)
T 2dqw_A          171 VVAEVKAFLEAQARRALSAGVPQVVLDPGFGFGKLLEHNLALLRRLDEIVALGHPVLVGLSRKRTIGELSGVEDPAQRVH  250 (294)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCSCEEEECCTTSSCCHHHHHHHHHTHHHHHTTSSCBEECCTTCHHHHHHHTCCSGGGCHH
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCcEEEcCCCCcccCHHHHHHHHHHHHHHhcCCCCEEEEeccchhhhhhcCCCchhhhHH
Confidence                 34677778888899998655533334444 566777777775431 3334333111               1122


Q ss_pred             hHHHHHHHHHHhCCCEEee
Q 015894          305 QALSNILASLQMGISTVDS  323 (398)
Q Consensus       305 lA~ANalaAl~aGa~~VD~  323 (398)
                      ...+-+..|+..|+++|.+
T Consensus       251 ~t~a~~~~a~~~Ga~IvRv  269 (294)
T 2dqw_A          251 GSVAAHLFAVMKGVRLLRV  269 (294)
T ss_dssp             HHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHHHHHHHcCCcEEEc
Confidence            2336666777888877754

>1w8s_A FBP aldolase, fructose-bisphosphate aldolase class I; TIM barrel, glycolytic, archaeal, catalytic mechanism, reaction intermediate, lyase; HET: FBP; 1.85A {Thermoproteus tenax} SCOP: c.1.10.1 PDB: 1w8r_A* 2yce_A* 1ojx_A 1ok4_A 1ok6_A

Probab=96.94  E-value=0.018  Score=54.57  Aligned_cols=177  Identities=17%  Similarity=0.135  Sum_probs=112.5

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEE----E----eC--C---HhhHHHHHH
Q 015894          117 PAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPV----L----TP--N---LKGFEAAVA  183 (398)
Q Consensus       117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~----l----~~--n---~~~ie~a~~  183 (398)
                      +.++..++++...+.|++.+-+..    .|+          +... ..++.+.+    .    .+  +   ...++.|++
T Consensus        39 ~~~di~~~~~~a~~~~~~av~v~~----~~v----------~~~~-~~~~~liv~~~~~~~~~g~~~~~~~~~~ve~Ai~  103 (263)
T 1w8s_A           39 DSADPEYILRLARDAGFDGVVFQR----GIA----------EKYY-DGSVPLILKLNGKTTLYNGEPVSVANCSVEEAVS  103 (263)
T ss_dssp             GGGCHHHHHHHHHHHTCSEEEECH----HHH----------HHHC-CSSSCEEEECEECCTTCCSSCCCEESSCHHHHHH
T ss_pred             chhhHHHHHHHHHhhCCCEEEECH----HHH----------HHhh-cCCCcEEEEEeCCCCcCCCCccchHHHHHHHHHH
Confidence            566778899999999999998752    111          1111 22222111    1    11  1   146889999


Q ss_pred             cCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 015894          184 AGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCS  263 (398)
Q Consensus       184 ~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad  263 (398)
                      .|++.|.+.....        ..+..+.++.+.++++.++++|+.+... ++.-|.......+++.+...++.+.++|+|
T Consensus       104 ~Ga~~v~~~~nig--------~~~~~~~~~~~~~v~~~~~~~~~~vIi~-~~~~G~~~~~~~s~~~i~~a~~~a~~~GAD  174 (263)
T 1w8s_A          104 LGASAVGYTIYPG--------SGFEWKMFEELARIKRDAVKFDLPLVVE-SFPRGGKVVNETAPEIVAYAARIALELGAD  174 (263)
T ss_dssp             TTCSEEEEEECTT--------STTHHHHHHHHHHHHHHHHHHTCCEEEE-ECCCSTTCCCTTCHHHHHHHHHHHHHHTCS
T ss_pred             CCCCEEEEEEecC--------CcCHHHHHHHHHHHHHHHHHcCCeEEEE-eeCCCCccccCCCHHHHHHHHHHHHHcCCC
Confidence            9999987765222        1245678899999999999999987532 222111111112678888888999999999


Q ss_pred             EEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCC--ccchHHHHHHHHHHhCCCEEee
Q 015894          264 EISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHD--TYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       264 ~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hn--d~GlA~ANalaAl~aGa~~VD~  323 (398)
                      .|-.. +.|  .|+.++.+.+.. ...|.  +..=+=.  |...+++|.-.++++||+.+-+
T Consensus       175 ~vkt~-~~~--~~e~~~~~~~~~-~~~pV--~asGGi~~~~~~~~l~~i~~~~~aGA~Gvsv  230 (263)
T 1w8s_A          175 AMKIK-YTG--DPKTFSWAVKVA-GKVPV--LMSGGPKTKTEEDFLKQVEGVLEAGALGIAV  230 (263)
T ss_dssp             EEEEE-CCS--SHHHHHHHHHHT-TTSCE--EEECCSCCSSHHHHHHHHHHHHHTTCCEEEE
T ss_pred             EEEEc-CCC--CHHHHHHHHHhC-CCCeE--EEEeCCCCCCHHHHHHHHHHHHHcCCeEEEE
Confidence            98888 432  566666655443 22242  2222333  7889999999999999985443

>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*

Probab=96.92  E-value=0.028  Score=54.60  Aligned_cols=190  Identities=18%  Similarity=0.203  Sum_probs=131.9

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH---hccCCcEEEEe---CCHhhHHHHHHcCCCE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ---NVEGARFPVLT---PNLKGFEAAVAAGAKE  188 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~---~~~~~~l~~l~---~n~~~ie~a~~~Gv~~  188 (398)
                      ....+....++++-.+.+-+.|=-.+...-++.    ..+.+...++   + .++.+....   .+.+.+..|+++|...
T Consensus        24 v~n~e~~~Ail~AAee~~sPvIlq~s~g~~~y~----g~~~~~~~v~~~a~-~~VPValHlDHg~~~e~~~~ai~~GFtS   98 (305)
T 1rvg_A           24 VNNMEFLQAVLEAAEEQRSPVILALSEGAMKYG----GRALTLMAVELAKE-ARVPVAVHLDHGSSYESVLRALRAGFTS   98 (305)
T ss_dssp             CCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHH----HHHHHHHHHHHHHH-CSSCEEEEEEEECSHHHHHHHHHTTCSE
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEECChhHHhhC----CHHHHHHHHHHHHh-CCCcEEEECCCCCCHHHHHHHHHcCCCe
Confidence            567888889999999999998766543221111    1122222222   3 444444433   4678899999999998


Q ss_pred             EEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC--------CCCCHHHHHHHHHHHHhC
Q 015894          189 VAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE--------GMVPPSKVAYVSKQLYDM  260 (398)
Q Consensus       189 v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~--------~r~~~~~l~~~a~~l~~~  260 (398)
                      |.+=.|          ..+.+|+++.-++++++|++.|+.|++.|-..-|.++.        -.++|+...+++++   .
T Consensus        99 VMiDgS----------~~p~eENi~~Tk~vv~~ah~~gvsVEaELG~vgg~Ed~~~~~~~~~~yT~Peea~~Fv~~---T  165 (305)
T 1rvg_A           99 VMIDKS----------HEDFETNVRETRRVVEAAHAVGVTVEAELGRLAGIEEHVAVDEKDALLTNPEEARIFMER---T  165 (305)
T ss_dssp             EEECCT----------TSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCCCSCC------CCTTCCCHHHHHHHHHH---H
T ss_pred             eeeCCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCccCCccccccccccCCHHHHHHHHHH---H
Confidence            877332          23678999999999999999999999888876554542        13889988887764   5


Q ss_pred             CCCEEEE--ccCcCcCC----HHHHHHHHHHHHhhCCCCeEEEEeCC-------------------ccchHHHHHHHHHH
Q 015894          261 GCSEISL--GDTIGVGT----PGTVIPMLEAVLDAVPVDKLAVHFHD-------------------TYGQALSNILASLQ  315 (398)
Q Consensus       261 Gad~I~L--~DT~G~~~----P~~v~~lv~~l~~~~p~~~l~~H~Hn-------------------d~GlA~ANalaAl~  315 (398)
                      |+|.+.+  .-+=|.-.    |.==.++++.+++.+| +||.+|+=.                   +.|........|++
T Consensus       166 gvD~LAvaiGt~HG~Yk~~g~p~L~~~~L~~I~~~~~-vpLVlHGgSsv~~~~~~~~~~~gg~~~~~~G~p~e~i~~ai~  244 (305)
T 1rvg_A          166 GADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLVP-APLVLHGASAVPPELVERFRASGGEIGEAAGIHPEDIKKAIS  244 (305)
T ss_dssp             CCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHCC-SCEEECSCCCCCHHHHHHHHHTTCCCCSCBCCCHHHHHHHHH
T ss_pred             CCCEEEEecCccccccCCCCCCccCHHHHHHHHHhcC-CCEEEeCCCCCcHHHHHHHHhhccccccCCCCCHHHHHHHHH
Confidence            9996443  34444433    3223467888888888 689999866                   56888888999999


Q ss_pred             hCCCEEee
Q 015894          316 MGISTVDS  323 (398)
Q Consensus       316 aGa~~VD~  323 (398)
                      .|+.-|+.
T Consensus       245 ~GV~KiNi  252 (305)
T 1rvg_A          245 LGIAKINT  252 (305)
T ss_dssp             TTEEEEEE
T ss_pred             CCCeEEEE
Confidence            99876543

>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A

Probab=96.91  E-value=0.019  Score=52.96  Aligned_cols=171  Identities=15%  Similarity=0.144  Sum_probs=103.2

Q ss_pred             HHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEE--EEeCCH-hhHHHHHHcCCCEEEEeccCc
Q 015894          120 VKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFP--VLTPNL-KGFEAAVAAGAKEVAIFASAS  196 (398)
Q Consensus       120 ~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~--~l~~n~-~~ie~a~~~Gv~~v~i~~~~S  196 (398)
                      .-.+.++.+.+.|++.|++...- ..++|.+....+..+.+++..+..+.  .++.+. +-++.+.++|+|.|.+....+
T Consensus        20 ~l~~~i~~~~~~Gad~i~l~i~D-g~fv~~~~~~~~~~~~lr~~~~~~~~v~lmv~d~~~~i~~~~~agad~v~vH~~~~   98 (228)
T 1h1y_A           20 NLAAEADRMVRLGADWLHMDIMD-GHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVS   98 (228)
T ss_dssp             GHHHHHHHHHHTTCSEEEEEEEB-SSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSCGGGGHHHHHHHTCSEEEEEGGGC
T ss_pred             HHHHHHHHHHHcCCCEEEEEEec-CCcCcchhhCHHHHHHHHhhcCCcEEEEEEecCHHHHHHHHHHcCCCEEEECCCCc
Confidence            34567788899999999887321 11122222223455666654443443  344443 358899999999998876544


Q ss_pred             hHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC--CCCEEEEc----cC
Q 015894          197 ESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM--GCSEISLG----DT  270 (398)
Q Consensus       197 d~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~--Gad~I~L~----DT  270 (398)
                      +.            .   +.+.++.+++.|+.+...+.     |.   ++.+.+    +.+.+.  ++|.|.+.    -+
T Consensus        99 ~~------------~---~~~~~~~i~~~g~~igv~~~-----p~---t~~e~~----~~~~~~~~~~d~vl~~sv~pg~  151 (228)
T 1h1y_A           99 RD------------N---WQELIQSIKAKGMRPGVSLR-----PG---TPVEEV----FPLVEAENPVELVLVMTVEPGF  151 (228)
T ss_dssp             TT------------T---HHHHHHHHHHTTCEEEEEEC-----TT---SCGGGG----HHHHHSSSCCSEEEEESSCTTC
T ss_pred             cc------------H---HHHHHHHHHHcCCCEEEEEe-----CC---CCHHHH----HHHHhcCCCCCEEEEEeecCCC
Confidence            31            0   13556777888987763221     21   233332    333455  89988772    12


Q ss_pred             cCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894          271 IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD  322 (398)
Q Consensus       271 ~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD  322 (398)
                      .|.-.+....+.++.+++..+..++.+    +-|....|+-.++++||+.|=
T Consensus       152 ~g~~~~~~~l~~i~~~~~~~~~~pi~v----~GGI~~~ni~~~~~aGaD~vv  199 (228)
T 1h1y_A          152 GGQKFMPEMMEKVRALRKKYPSLDIEV----DGGLGPSTIDVAASAGANCIV  199 (228)
T ss_dssp             SSCCCCGGGHHHHHHHHHHCTTSEEEE----ESSCSTTTHHHHHHHTCCEEE
T ss_pred             CcccCCHHHHHHHHHHHHhcCCCCEEE----ECCcCHHHHHHHHHcCCCEEE
Confidence            244445666777888888775556665    456666788888889998653

>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0

Probab=96.85  E-value=0.044  Score=52.89  Aligned_cols=197  Identities=17%  Similarity=0.166  Sum_probs=130.5

Q ss_pred             cCCCCC--CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH---h--ccCCcEEEEe---CCHhh
Q 015894          108 GLQNEK--NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ---N--VEGARFPVLT---PNLKG  177 (398)
Q Consensus       108 G~Q~~~--~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~---~--~~~~~l~~l~---~n~~~  177 (398)
                      +.+..+  +....+....++++-.+.+-+.|=-.++..-++   +...+.+...++   +  -.++.+....   .+.+.
T Consensus        19 ~~yAV~AfNv~n~e~~~avi~AAee~~sPvIlq~s~~~~~~---~~g~~~~~~~v~~~A~~~~~~VPValHlDHg~~~e~   95 (288)
T 3q94_A           19 GKYAVGQFNMNNLEWTQAILAAAEEEKSPVILGVSEGAARH---MTGFKTVVAMVKALIEEMNITVPVAIHLDHGSSFEK   95 (288)
T ss_dssp             HTCCEEEEECCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHH---TSCHHHHHHHHHHHHHHTTCCSCEEEEEEEECSHHH
T ss_pred             CCcEEEEEeeCCHHHHHHHHHHHHHhCCCEEEECChhhhhh---cCCHHHHHHHHHHHHHhcCCCCcEEEECCCCCCHHH
Confidence            444443  357888888999999999999776544321111   012222323333   2  2234444432   46788


Q ss_pred             HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC------CCCCHHHHH
Q 015894          178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE------GMVPPSKVA  251 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~------~r~~~~~l~  251 (398)
                      +..|+++|...|.+=.|  .        .+.+|+++.-++++++|++.|+.|++.|-..-|.++.      ..++|+...
T Consensus        96 i~~ai~~GFtSVMiDgS--~--------~p~eeNi~~Tk~vv~~ah~~gvsVEaElG~vgG~Ed~~~~~~~~yT~Peea~  165 (288)
T 3q94_A           96 CKEAIDAGFTSVMIDAS--H--------HPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEGVIYADPAECK  165 (288)
T ss_dssp             HHHHHHHTCSEEEECCT--T--------SCHHHHHHHHHHHHHHHHTTTCEEEEEESBCBCSCSSCGGGGCBCCCHHHHH
T ss_pred             HHHHHHcCCCeEEEeCC--C--------CCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeccccCCcCCccccCCCHHHHH
Confidence            99999999998887333  1        3578999999999999999999999888876555543      258898877


Q ss_pred             HHHHHHHhCCCCEEEEc--cCcCcC--CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          252 YVSKQLYDMGCSEISLG--DTIGVG--TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       252 ~~a~~l~~~Gad~I~L~--DT~G~~--~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      ++++   +.|+|.+.++  -.=|.-  .|.==.++++.+++..| +||.+|+=.  |..-.....|++.|+.-|+.
T Consensus       166 ~Fv~---~TgvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~v~-vpLVlHGgS--G~~~e~i~~ai~~Gv~KiNi  235 (288)
T 3q94_A          166 HLVE---ATGIDCLAPALGSVHGPYKGEPNLGFAEMEQVRDFTG-VPLVLHGGT--GIPTADIEKAISLGTSKINV  235 (288)
T ss_dssp             HHHH---HHCCSEEEECSSCBSSCCSSSCCCCHHHHHHHHHHHC-SCEEECCCT--TCCHHHHHHHHHTTEEEEEE
T ss_pred             HHHH---HHCCCEEEEEcCcccCCcCCCCccCHHHHHHHHHhcC-CCEEEeCCC--CCCHHHHHHHHHcCCeEEEE
Confidence            7765   5688865443  222321  13222345666777666 688888754  78888999999999876644

>4h3d_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, aldolase class I; HET: PGE SHL; 1.95A {Clostridium difficile} PDB: 3js3_A*

Probab=96.83  E-value=0.16  Score=48.09  Aligned_cols=226  Identities=11%  Similarity=0.045  Sum_probs=138.0

Q ss_pred             CCCCccEEEeCCCcccCCCCC---CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh----ccC
Q 015894           93 RVPGFVKIVEVGPRDGLQNEK---NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN----VEG  165 (398)
Q Consensus        93 ~~p~~I~i~D~TLRDG~Q~~~---~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~----~~~  165 (398)
                      .|.+.|+|-++++-+|.-.--   ..-+.++.++-++.+...|.|.||+-...-.    ...|.+++...+..    +.+
T Consensus         3 ~m~~~v~v~~~~ig~g~PkIcvpl~~~t~~e~l~~a~~~~~~~aD~vElR~D~l~----~~~~~~~v~~~l~~lr~~~~~   78 (258)
T 4h3d_A            3 AMKRKVQVKNITIGEGRPKICVPIIGKNKKDIIKEAKELKDACLDIIEWRVDFFE----NVENIKEVKEVLYELRSYIHD   78 (258)
T ss_dssp             -CCCCEEETTEEETSSSCEEEEEECCSSHHHHHHHHHHHTTSSCSEEEEEGGGCT----TTTCHHHHHHHHHHHHHHCTT
T ss_pred             CCcceEEEcCEEeCCCCCEEEEEeCCCCHHHHHHHHHHHhhcCCCEEEEeecccc----ccCCHHHHHHHHHHHHHhcCC
Confidence            478889999999987743211   1235677777788888999999999753211    12345555544432    234


Q ss_pred             CcEEEEeCCH-hh-------------HHHHHHcC-CCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEE
Q 015894          166 ARFPVLTPNL-KG-------------FEAAVAAG-AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVR  230 (398)
Q Consensus       166 ~~l~~l~~n~-~~-------------ie~a~~~G-v~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~  230 (398)
                      ..+..-+|.. +|             ++.+.+.| ++.|.+-....+               +...++++.+++.|..+-
T Consensus        79 lPiI~T~Rt~~EGG~~~~~~~~~~~ll~~~~~~~~~d~iDvEl~~~~---------------~~~~~l~~~a~~~~~kiI  143 (258)
T 4h3d_A           79 IPLLFTFRSVVEGGEKLISRDYYTTLNKEISNTGLVDLIDVELFMGD---------------EVIDEVVNFAHKKEVKVI  143 (258)
T ss_dssp             SCEEEECCCGGGTCSCCCCHHHHHHHHHHHHHTTCCSEEEEEGGGCH---------------HHHHHHHHHHHHTTCEEE
T ss_pred             CCEEEEEechhhCCCCCCCHHHHHHHHHHHHhcCCchhhHHhhhccH---------------HHHHHHHHHHHhCCCEEE
Confidence            4444444532 11             34556666 899999765433               223466788888888775


Q ss_pred             EEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHh---hCCCCeEEEEeCCccchHH
Q 015894          231 GYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLD---AVPVDKLAVHFHDTYGQAL  307 (398)
Q Consensus       231 ~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~---~~p~~~l~~H~Hnd~GlA~  307 (398)
                      +..=. |    ....+.+.+.....++.+.|+|.+-|+=|.  -++.++.+++....+   ..++.|+-.-.=-..  +.
T Consensus       144 ~S~Hd-f----~~TP~~~el~~~~~~~~~~gaDIvKia~~~--~~~~D~l~Ll~~~~~~~~~~~~~P~I~~~MG~~--G~  214 (258)
T 4h3d_A          144 ISNHD-F----NKTPKKEEIVSRLCRMQELGADLPKIAVMP--QNEKDVLVLLEATNEMFKIYADRPIITMSMSGM--GV  214 (258)
T ss_dssp             EEEEE-S----SCCCCHHHHHHHHHHHHHTTCSEEEEEECC--SSHHHHHHHHHHHHHHHHHTCSSCBEEEECTGG--GG
T ss_pred             EEEec-C----CCCCCHHHHHHHHHHHHHhCCCEEEEEEcc--CCHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCC--Ch
Confidence            32211 1    222345788888999999999998887653  367788777766543   345555543322222  23


Q ss_pred             HHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhC
Q 015894          308 SNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGL  353 (398)
Q Consensus       308 ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~  353 (398)
                      -.=+.+-..|-....+++.   + +-   ..|+.+++++-..|+-+
T Consensus       215 ~SRi~~~~fGS~lTf~~~~---~-~s---APGQl~~~el~~~l~lL  253 (258)
T 4h3d_A          215 ISRLCGEIFGSALTFGAAK---S-VS---APGQISFKELNSVLNLL  253 (258)
T ss_dssp             GGGTCHHHHCBCEEECBCC----------CTTCCBHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCceEeccCC---C-CC---CCCCCCHHHHHHHHHHH
Confidence            3344555668777777753   2 33   45699999998877643

>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2

Probab=96.83  E-value=0.0079  Score=55.89  Aligned_cols=170  Identities=21%  Similarity=0.217  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEE--EeCCH-hhHHHHHHcCCCEEEEecc-
Q 015894          119 VVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPV--LTPNL-KGFEAAVAAGAKEVAIFAS-  194 (398)
Q Consensus       119 ~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~n~-~~ie~a~~~Gv~~v~i~~~-  194 (398)
                      ..-.+.++.+.+.|++.+++.... ..++|.+....++.+.+++..+..+.+  ++.|. +-++.+.++|+|.|.+..- 
T Consensus        17 ~~l~~~i~~~~~~Gad~ihldi~D-G~fvp~~~~g~~~v~~lr~~~~~~~~vhlmv~dp~~~i~~~~~aGadgv~vh~e~   95 (230)
T 1tqj_A           17 SRLGEEIKAVDEAGADWIHVDVMD-GRFVPNITIGPLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHVEH   95 (230)
T ss_dssp             GGHHHHHHHHHHTTCSEEEEEEEB-SSSSSCBCBCHHHHHHHGGGCCSEEEEEEESSSGGGTHHHHHHHTCSEEEEECST
T ss_pred             hHHHHHHHHHHHcCCCEEEEEEEe-cCCCcchhhhHHHHHHHHhhcCCcEEEEEEccCHHHHHHHHHHcCCCEEEECccc
Confidence            344567888899999999987532 223344443346677777655555543  34443 3578999999999988754 


Q ss_pred             -CchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccC---
Q 015894          195 -ASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDT---  270 (398)
Q Consensus       195 -~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT---  270 (398)
                       ..+                ...+.++.+++.|..+.+.+.     |.   ++.+.+..+.     .++|.|.+.=.   
T Consensus        96 ~~~~----------------~~~~~~~~i~~~g~~~gv~~~-----p~---t~~e~~~~~~-----~~~D~v~~msv~pg  146 (230)
T 1tqj_A           96 NASP----------------HLHRTLCQIRELGKKAGAVLN-----PS---TPLDFLEYVL-----PVCDLILIMSVNPG  146 (230)
T ss_dssp             TTCT----------------THHHHHHHHHHTTCEEEEEEC-----TT---CCGGGGTTTG-----GGCSEEEEESSCC-
T ss_pred             ccch----------------hHHHHHHHHHHcCCcEEEEEe-----CC---CcHHHHHHHH-----hcCCEEEEEEeccc
Confidence             332                123567788899998764332     21   2233322222     37887744322   


Q ss_pred             -cCcCCHHHHHHHHHHHHhhCC----CCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894          271 -IGVGTPGTVIPMLEAVLDAVP----VDKLAVHFHDTYGQALSNILASLQMGISTVD  322 (398)
Q Consensus       271 -~G~~~P~~v~~lv~~l~~~~p----~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD  322 (398)
                       .|.-.+....+.++.+++..+    +.+|.+    +.|....|+-...++||+.+=
T Consensus       147 ~ggq~~~~~~~~~i~~lr~~~~~~~~~~~I~v----~GGI~~~~~~~~~~aGad~vv  199 (230)
T 1tqj_A          147 FGGQSFIPEVLPKIRALRQMCDERGLDPWIEV----DGGLKPNNTWQVLEAGANAIV  199 (230)
T ss_dssp             ---CCCCGGGHHHHHHHHHHHHHHTCCCEEEE----ESSCCTTTTHHHHHHTCCEEE
T ss_pred             cCCccCcHHHHHHHHHHHHHHHhcCCCCcEEE----ECCcCHHHHHHHHHcCCCEEE
Confidence             233334456666777776552    456766    667777888888999998653

>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A

Probab=96.82  E-value=0.18  Score=48.30  Aligned_cols=169  Identities=16%  Similarity=0.192  Sum_probs=100.5

Q ss_pred             cEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCC-CCCcccCCCCHHHH---HHHHHhc---cCCcEEE
Q 015894           98 VKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFV-SPKWVPQLADAKDV---MAAIQNV---EGARFPV  170 (398)
Q Consensus        98 I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~-~~~~~p~~~D~~~v---~~~i~~~---~~~~l~~  170 (398)
                      +-|+.+|. |-.+--|...+.+..++.++.+.+.|.+.|++|.-. .|...|.. ..+|+   ...++.+   .++.++.
T Consensus        18 mGilN~Tp-dSFsdgg~~~~~~~a~~~a~~~v~~GAdiIDIGgestrPga~~v~-~~eE~~rv~pvi~~l~~~~~~piSI   95 (282)
T 1aj0_A           18 MGILNVTP-DSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAEVS-VEEELQRVIPVVEAIAQRFEVWISV   95 (282)
T ss_dssp             EEEEECCT-TTSCCCCCCTHHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCC-HHHHHHHHHHHHHHHHHHCCCEEEE
T ss_pred             EEEEeCCC-CccccccccCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCC-HHHHHHHHHHHHHHHHhhcCCeEEE
Confidence            44566666 333222334678888999999999999999999733 35432221 12233   2233322   2666666


Q ss_pred             EeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCC--C--CC
Q 015894          171 LTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEG--M--VP  246 (398)
Q Consensus       171 l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~--r--~~  246 (398)
                      =+.+.+-+++|+++|++.|.=.....                  ..++++.++++|..+.  ++..-|.|..-  +  ++
T Consensus        96 DT~~~~va~aAl~aGa~iINdvsg~~------------------d~~~~~~~a~~~~~vV--lmh~~G~p~tm~~~~~y~  155 (282)
T 1aj0_A           96 DTSKPEVIRESAKVGAHIINDIRSLS------------------EPGALEAAAETGLPVC--LMHMQGNPKTMQEAPKYD  155 (282)
T ss_dssp             ECCCHHHHHHHHHTTCCEEEETTTTC------------------STTHHHHHHHHTCCEE--EECCSSCTTCCSCCCCCS
T ss_pred             eCCCHHHHHHHHHcCCCEEEECCCCC------------------CHHHHHHHHHhCCeEE--EEccCCCCccccccCccc
Confidence            67788899999999999876322111                  1244566778888775  44433333211  1  11


Q ss_pred             ------HHHHHHHHHHHHhCCCC--EEEEccCcCcC-CHHHHHHHHHHHHh
Q 015894          247 ------PSKVAYVSKQLYDMGCS--EISLGDTIGVG-TPGTVIPMLEAVLD  288 (398)
Q Consensus       247 ------~~~l~~~a~~l~~~Gad--~I~L~DT~G~~-~P~~v~~lv~~l~~  288 (398)
                            .+++.+.++.+.++|++  .|.|==-+|.. ++.+-.++++.+..
T Consensus       156 d~~~ev~~~l~~~i~~a~~~Gi~~~~IilDPg~gf~k~~~~n~~ll~~l~~  206 (282)
T 1aj0_A          156 DVFAEVNRYFIEQIARCEQAGIAKEKLLLDPGFGFGKNLSHNYSLLARLAE  206 (282)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTGGG
T ss_pred             hHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCCcccCHHHHHHHHHHHHH
Confidence                  56777888888999987  45543222322 34555666666653

>1n7k_A Deoxyribose-phosphate aldolase; A.pernix, tetramer, alpha-beta TIM barrel, riken S genomics/proteomics initiative, RSGI, structural genomics,; 2.00A {Aeropyrum pernix} SCOP: c.1.10.1

Probab=96.80  E-value=0.32  Score=45.43  Aligned_cols=185  Identities=11%  Similarity=0.100  Sum_probs=119.2

Q ss_pred             EEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe--CC--
Q 015894           99 KIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT--PN--  174 (398)
Q Consensus        99 ~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~n--  174 (398)
                      ..+|-|+      .+-.-+.++..++++...+.|+..+-+.    |.|+       ...+.++..+++++.+.+  |.  
T Consensus        22 ~~iDht~------L~p~~t~~~i~~l~~~a~~~~~~aVcv~----p~~v-------~a~~~l~~~~~v~v~tvigFP~G~   84 (234)
T 1n7k_A           22 SRIDSTL------LSPRATEEDVRNLVREASDYGFRCAVLT----PVYT-------VKISGLAEKLGVKLCSVIGFPLGQ   84 (234)
T ss_dssp             TTEEEEC------CCTTCCHHHHHHHHHHHHHHTCSEEEEC----HHHH-------HHHHHHHHHHTCCEEEEESTTTCC
T ss_pred             HHhceec------cCCCCCHHHHHHHHHHHHHhCCCEEEEc----hHHh-------eeehHhCCCCCceEEEEeCCCCCC
Confidence            3456666      1224578899999999999999998874    2211       112222222256776655  31  


Q ss_pred             ------HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHH
Q 015894          175 ------LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPS  248 (398)
Q Consensus       175 ------~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~  248 (398)
                            ...++.|++.|++.|.+.+.....         .++.++.+..+++.|.+.|..+-+-+.  .     ...+++
T Consensus        85 ~~~~~k~~e~~~Av~~GAdEID~vinig~~---------~~~v~~ei~~v~~a~~~~g~~lKvIlE--t-----~~L~~e  148 (234)
T 1n7k_A           85 APLEVKLVEAQTVLEAGATELDVVPHLSLG---------PEAVYREVSGIVKLAKSYGAVVKVILE--A-----PLWDDK  148 (234)
T ss_dssp             SCHHHHHHHHHHHHHHTCCEEEECCCGGGC---------HHHHHHHHHHHHHHHHHTTCEEEEECC--G-----GGSCHH
T ss_pred             CcHHHHHHHHHHHHHcCCCEEEEeccchHH---------HHHHHHHHHHHHHHHhhcCCeEEEEEe--c-----cCCCHH
Confidence                  136789999999999998765432         227788888999999988887643232  2     123578


Q ss_pred             HHHHHHHHHHhCCCCEEEEccCc---CcCCHHHHHHHHHHHHhhCCCCeEEEEe--CCccchHHHHHHHHHHhCCCEEee
Q 015894          249 KVAYVSKQLYDMGCSEISLGDTI---GVGTPGTVIPMLEAVLDAVPVDKLAVHF--HDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       249 ~l~~~a~~l~~~Gad~I~L~DT~---G~~~P~~v~~lv~~l~~~~p~~~l~~H~--Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      .+...++.+.++|+|.|--.-..   |..+++++.-  +++++... ++|-.=+  + +    ...+++-+++|+++|-+
T Consensus       149 ~i~~a~ria~eaGADfVKTsTG~~~~~gAt~~dv~l--~~m~~~v~-v~VKaaGGir-t----~~~al~~i~aGa~RiG~  220 (234)
T 1n7k_A          149 TLSLLVDSSRRAGADIVKTSTGVYTKGGDPVTVFRL--ASLAKPLG-MGVKASGGIR-S----GIDAVLAVGAGADIIGT  220 (234)
T ss_dssp             HHHHHHHHHHHTTCSEEESCCSSSCCCCSHHHHHHH--HHHHGGGT-CEEEEESSCC-S----HHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHHHhCCCEEEeCCCCCCCCCCCHHHHHH--HHHHHHHC-CCEEEecCCC-C----HHHHHHHHHcCccccch
Confidence            89999999999999988765321   4456666554  11344333 3333322  2 2    36677777999998866


Q ss_pred             c
Q 015894          324 S  324 (398)
Q Consensus       324 S  324 (398)
                      |
T Consensus       221 S  221 (234)
T 1n7k_A          221 S  221 (234)
T ss_dssp             T
T ss_pred             H
Confidence            5

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A

Probab=96.77  E-value=0.01  Score=55.25  Aligned_cols=166  Identities=13%  Similarity=0.119  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHhcCCCEEEE----ecCCCCCcccCCCCHHHHHHHHHhc--cCCcEEE--EeCCH-hhHHHHHHcCCCEE
Q 015894          119 VVKVELIKLLVSSGLAVVEA----TSFVSPKWVPQLADAKDVMAAIQNV--EGARFPV--LTPNL-KGFEAAVAAGAKEV  189 (398)
Q Consensus       119 ~~k~~ia~~L~~aGv~~IEv----G~~~~~~~~p~~~D~~~v~~~i~~~--~~~~l~~--l~~n~-~~ie~a~~~Gv~~v  189 (398)
                      ..-.+-++.+.++|.+.+-+    |.|+     |.+.--..+.+.+|+.  ++..+-+  ++.+. +-++.+.++|+|.|
T Consensus        17 ~~l~~~i~~l~~~g~d~~h~DVmDg~Fv-----pn~~~G~~~v~~ir~~~~~~~~~dvhLmv~~p~~~i~~~~~aGad~i   91 (228)
T 3ovp_A           17 ANLGAECLRMLDSGADYLHLDVMDGHFV-----PNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQWVKPMAVAGANQY   91 (228)
T ss_dssp             GGHHHHHHHHHHTTCSCEEEEEEBSSSS-----SCBCBCHHHHHHHHHHHCSSSCEEEEEECSCGGGGHHHHHHHTCSEE
T ss_pred             hhHHHHHHHHHHcCCCEEEEEecCCCcC-----cccccCHHHHHHHHHhhCCCCcEEEEEEeCCHHHHHHHHHHcCCCEE
Confidence            33456677888999995555    4554     3333233566777754  5655544  34444 34788899999999


Q ss_pred             EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE--
Q 015894          190 AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL--  267 (398)
Q Consensus       190 ~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L--  267 (398)
                      .+..-..                +.+.+.++.+|++|..+.+.+.     |.   ++.+.+.++.    + .+|.|.+  
T Consensus        92 tvH~Ea~----------------~~~~~~i~~i~~~G~k~gval~-----p~---t~~e~l~~~l----~-~~D~Vl~ms  142 (228)
T 3ovp_A           92 TFHLEAT----------------ENPGALIKDIRENGMKVGLAIK-----PG---TSVEYLAPWA----N-QIDMALVMT  142 (228)
T ss_dssp             EEEGGGC----------------SCHHHHHHHHHHTTCEEEEEEC-----TT---SCGGGTGGGG----G-GCSEEEEES
T ss_pred             EEccCCc----------------hhHHHHHHHHHHcCCCEEEEEc-----CC---CCHHHHHHHh----c-cCCeEEEee
Confidence            9864322                2234667888999998765443     21   3344443333    1 3676643  


Q ss_pred             --ccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894          268 --GDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD  322 (398)
Q Consensus       268 --~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD  322 (398)
                        +...|.-.-.+..+.++.+|+..++.+|.+    |-|.-..|+-.++++||+.+=
T Consensus       143 v~pGf~Gq~f~~~~l~ki~~lr~~~~~~~I~V----dGGI~~~t~~~~~~aGAd~~V  195 (228)
T 3ovp_A          143 VEPGFGGQKFMEDMMPKVHWLRTQFPSLDIEV----DGGVGPDTVHKCAEAGANMIV  195 (228)
T ss_dssp             SCTTTCSCCCCGGGHHHHHHHHHHCTTCEEEE----ESSCSTTTHHHHHHHTCCEEE
T ss_pred             ecCCCCCcccCHHHHHHHHHHHHhcCCCCEEE----eCCcCHHHHHHHHHcCCCEEE
Confidence              223333222344556888888877666766    455656888899999999653

>3ctl_A D-allulose-6-phosphate 3-epimerase; D-glucitol 6-phosphate, (beta/alpha)8 barrel, carbohydrate metabolism, isomerase; HET: S6P; 2.20A {Escherichia coli} PDB: 3ct7_A*

Probab=96.74  E-value=0.011  Score=55.07  Aligned_cols=166  Identities=12%  Similarity=0.098  Sum_probs=101.1

Q ss_pred             HHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEE--EeCCHh-hHHHHHHcCCCEEEEeccC-ch
Q 015894          122 VELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPV--LTPNLK-GFEAAVAAGAKEVAIFASA-SE  197 (398)
Q Consensus       122 ~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~n~~-~ie~a~~~Gv~~v~i~~~~-Sd  197 (398)
                      .+-++.+ +.|++.+.+.... ..++|.+.--..+.+.+|+..+..+-+  ++.+.. -++.+.++|++.|.+..-. ++
T Consensus        16 ~~~i~~~-~~gad~lHvDvmD-G~fvpn~t~G~~~v~~lr~~~~~~~dvhLmv~dp~~~i~~~~~aGAd~itvh~Ea~~~   93 (231)
T 3ctl_A           16 KEQIEFI-DSHADYFHIDIMD-GHFVPNLTLSPFFVSQVKKLATKPLDCHLMVTRPQDYIAQLARAGADFITLHPETING   93 (231)
T ss_dssp             HHHHHHH-HTTCSCEEEEEEC-SSSSSCCCBCHHHHHHHHTTCCSCEEEEEESSCGGGTHHHHHHHTCSEEEECGGGCTT
T ss_pred             HHHHHHH-HcCCCEEEEEEEe-CccCccchhcHHHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcCCCEEEECcccCCc
Confidence            3455666 8999986664321 112343332335677778655554444  344543 3788999999999886433 22


Q ss_pred             HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc----cCcCc
Q 015894          198 SFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG----DTIGV  273 (398)
Q Consensus       198 ~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~----DT~G~  273 (398)
                                      .+.++++.+|++|..+.+.+.     |.   ++.+.+.++.     .++|.|.+.    -..|.
T Consensus        94 ----------------~~~~~i~~i~~~G~k~gv~ln-----p~---tp~~~~~~~l-----~~~D~VlvmsV~pGfggQ  144 (231)
T 3ctl_A           94 ----------------QAFRLIDEIRRHDMKVGLILN-----PE---TPVEAMKYYI-----HKADKITVMTVDPGFAGQ  144 (231)
T ss_dssp             ----------------THHHHHHHHHHTTCEEEEEEC-----TT---CCGGGGTTTG-----GGCSEEEEESSCTTCSSC
T ss_pred             ----------------cHHHHHHHHHHcCCeEEEEEE-----CC---CcHHHHHHHH-----hcCCEEEEeeeccCcCCc
Confidence                            134678888999999875443     22   2334443332     268877642    22343


Q ss_pred             CCHHHHHHHHHHHHhhCC----CCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894          274 GTPGTVIPMLEAVLDAVP----VDKLAVHFHDTYGQALSNILASLQMGISTVD  322 (398)
Q Consensus       274 ~~P~~v~~lv~~l~~~~p----~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD  322 (398)
                      .....+.+.++.+|+..+    +.+|++    |-|.-..|+-.++++||+.+=
T Consensus       145 ~f~~~~l~kI~~lr~~~~~~~~~~~I~V----dGGI~~~~~~~~~~aGAd~~V  193 (231)
T 3ctl_A          145 PFIPEMLDKLAELKAWREREGLEYEIEV----DGSCNQATYEKLMAAGADVFI  193 (231)
T ss_dssp             CCCTTHHHHHHHHHHHHHHHTCCCEEEE----ESCCSTTTHHHHHHHTCCEEE
T ss_pred             cccHHHHHHHHHHHHHHhccCCCceEEE----ECCcCHHHHHHHHHcCCCEEE
Confidence            344456666777776542    345666    678778889999999998663

>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}

Probab=96.71  E-value=0.08  Score=49.69  Aligned_cols=189  Identities=17%  Similarity=0.151  Sum_probs=122.3

Q ss_pred             EEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe--C---C
Q 015894          100 IVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT--P---N  174 (398)
Q Consensus       100 i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~---n  174 (398)
                      ++|-|+=      +-.-+.++..++++...+.|+..+-+    +|.|+|      ...+.++ -.++++...+  |   +
T Consensus        30 ~IDhTlL------~p~~t~~~i~~lc~eA~~~~~~aVcV----~p~~v~------~a~~~L~-~s~v~v~tVigFP~G~~   92 (239)
T 3ngj_A           30 YIDHTLL------KADATEEQIRKLCSEAAEYKFASVCV----NPTWVP------LCAELLK-GTGVKVCTVIGFPLGAT   92 (239)
T ss_dssp             TEEEEEC------CTTCCHHHHHHHHHHHHHHTCSEEEE----CGGGHH------HHHHHHT-TSSCEEEEEESTTTCCS
T ss_pred             hcCcccC------CCCCCHHHHHHHHHHHHhcCCcEEEE----CHHHHH------HHHHHhC-CCCCeEEEEeccCCCCC
Confidence            5676761      22567888889999999999998887    344443      2223332 2346666554  2   1


Q ss_pred             -----HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHH
Q 015894          175 -----LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSK  249 (398)
Q Consensus       175 -----~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~  249 (398)
                           ....+.|++.|+++|.+.+.+....     .-+++..++.+..+++.+..  ..+-  +....     +..+.+.
T Consensus        93 ~~~~Kv~Ea~~Ai~~GAdEIDmViNig~lk-----~g~~~~v~~eI~~v~~a~~~--~~lK--VIlEt-----~~Lt~ee  158 (239)
T 3ngj_A           93 PSEVKAYETKVAVEQGAEEVDMVINIGMVK-----AKKYDDVEKDVKAVVDASGK--ALTK--VIIEC-----CYLTNEE  158 (239)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEEECCHHHHH-----TTCHHHHHHHHHHHHHHHTT--SEEE--EECCG-----GGSCHHH
T ss_pred             chHHHHHHHHHHHHcCCCEEEEEeehHHhc-----cccHHHHHHHHHHHHHHhcC--CceE--EEEec-----CCCCHHH
Confidence                 1356789999999999988765321     23567788888888888753  3332  22222     2357888


Q ss_pred             HHHHHHHHHhCCCCEEEEcc--CcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeecc
Q 015894          250 VAYVSKQLYDMGCSEISLGD--TIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSV  325 (398)
Q Consensus       250 l~~~a~~l~~~Gad~I~L~D--T~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv  325 (398)
                      +...++.+.++|+|.|--.-  +.|..++++++.+-+.+...+     .+-.==-.- -...+++-+++||++|-+|-
T Consensus       159 i~~a~~ia~~aGADfVKTSTGf~~ggAt~~dv~lmr~~vg~~v-----~VKasGGIr-t~~da~~~i~aGA~riGtS~  230 (239)
T 3ngj_A          159 KVEVCKRCVAAGAEYVKTSTGFGTHGATPEDVKLMKDTVGDKA-----LVKAAGGIR-TFDDAMKMINNGASRIGASA  230 (239)
T ss_dssp             HHHHHHHHHHHTCSEEECCCSSSSCCCCHHHHHHHHHHHGGGS-----EEEEESSCC-SHHHHHHHHHTTEEEEEESC
T ss_pred             HHHHHHHHHHHCcCEEECCCCCCCCCCCHHHHHHHHHhhCCCc-----eEEEeCCCC-CHHHHHHHHHhcccceeccc
Confidence            99999999999999886652  246678888877666553332     222211111 12678888899999886663

>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A

Probab=96.71  E-value=0.019  Score=52.46  Aligned_cols=152  Identities=18%  Similarity=0.171  Sum_probs=97.7

Q ss_pred             HHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEE-eCCHhhHHHHHHcCCCEEEEeccCch
Q 015894          119 VVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVL-TPNLKGFEAAVAAGAKEVAIFASASE  197 (398)
Q Consensus       119 ~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l-~~n~~~ie~a~~~Gv~~v~i~~~~Sd  197 (398)
                      ++-+++++.+.+.|++.||++.-. +       +..+.++.+++ ++....+= +-+.++++.|+++|++.++.- . .+
T Consensus        25 ~~~~~~~~~l~~gGv~~iel~~k~-~-------~~~~~i~~~~~-~~~~~gag~vl~~d~~~~A~~~GAd~v~~~-~-~d   93 (207)
T 2yw3_A           25 EDLLGLARVLEEEGVGALEITLRT-E-------KGLEALKALRK-SGLLLGAGTVRSPKEAEAALEAGAAFLVSP-G-LL   93 (207)
T ss_dssp             CCHHHHHHHHHHTTCCEEEEECSS-T-------HHHHHHHHHTT-SSCEEEEESCCSHHHHHHHHHHTCSEEEES-S-CC
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCC-h-------HHHHHHHHHhC-CCCEEEeCeEeeHHHHHHHHHcCCCEEEcC-C-CC
Confidence            345789999999999999998532 1       23455666666 65443322 225578999999999998753 1 11


Q ss_pred             HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHH
Q 015894          198 SFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPG  277 (398)
Q Consensus       198 ~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~  277 (398)
                                        .++++.+++.|..+...           -.+++++    .++.++|+|.|.+   .. ..+.
T Consensus        94 ------------------~~v~~~~~~~g~~~i~G-----------~~t~~e~----~~A~~~Gad~v~~---fp-a~~~  136 (207)
T 2yw3_A           94 ------------------EEVAALAQARGVPYLPG-----------VLTPTEV----ERALALGLSALKF---FP-AEPF  136 (207)
T ss_dssp             ------------------HHHHHHHHHHTCCEEEE-----------ECSHHHH----HHHHHTTCCEEEE---TT-TTTT
T ss_pred             ------------------HHHHHHHHHhCCCEEec-----------CCCHHHH----HHHHHCCCCEEEE---ec-Cccc
Confidence                              25567778888875421           1245553    3455789999888   11 1111


Q ss_pred             HHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894          278 TVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD  322 (398)
Q Consensus       278 ~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD  322 (398)
                      .=.++++.++..+|.+|+-.=+    |....|+-.-+.+|++.|-
T Consensus       137 gG~~~lk~l~~~~~~ipvvaiG----GI~~~n~~~~l~aGa~~va  177 (207)
T 2yw3_A          137 QGVRVLRAYAEVFPEVRFLPTG----GIKEEHLPHYAALPNLLAV  177 (207)
T ss_dssp             THHHHHHHHHHHCTTCEEEEBS----SCCGGGHHHHHTCSSBSCE
T ss_pred             cCHHHHHHHHhhCCCCcEEEeC----CCCHHHHHHHHhCCCcEEE
Confidence            0126678888888776665433    4445688888999998543

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=96.70  E-value=0.099  Score=46.81  Aligned_cols=165  Identities=17%  Similarity=0.131  Sum_probs=96.8

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-cCCcEEE--EeCC-Hhh-HHHHHHcCCCEEE
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-EGARFPV--LTPN-LKG-FEAAVAAGAKEVA  190 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~~~~l~~--l~~n-~~~-ie~a~~~Gv~~v~  190 (398)
                      .+.++-+++++.+.+ |++.||+|.+..-      .+..++++.+++. ++..+.+  .+.+ ... ++.+.++|+|.|.
T Consensus        10 ~~~~~~~~~~~~~~~-~v~~iev~~~~~~------~~g~~~i~~l~~~~~~~~i~~~l~~~di~~~~~~~a~~~Gad~v~   82 (207)
T 3ajx_A           10 LSTEAALELAGKVAE-YVDIIELGTPLIK------AEGLSVITAVKKAHPDKIVFADMKTMDAGELEADIAFKAGADLVT   82 (207)
T ss_dssp             SCHHHHHHHHHHHGG-GCSEEEECHHHHH------HHCTHHHHHHHHHSTTSEEEEEEEECSCHHHHHHHHHHTTCSEEE
T ss_pred             CCHHHHHHHHHHhhc-cCCEEEECcHHHH------hhCHHHHHHHHHhCCCCeEEEEEEecCccHHHHHHHHhCCCCEEE
Confidence            467888999999988 9999999864310      0112345556643 4555443  3345 344 7889999999998


Q ss_pred             EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc--
Q 015894          191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG--  268 (398)
Q Consensus       191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~--  268 (398)
                      +.....+               +.+.++++.+++.|..+.  +++      .+..+|+..   ++.+.+.|+|.+.+.  
T Consensus        83 vh~~~~~---------------~~~~~~~~~~~~~g~~~g--v~~------~s~~~p~~~---~~~~~~~g~d~v~~~~~  136 (207)
T 3ajx_A           83 VLGSADD---------------STIAGAVKAAQAHNKGVV--VDL------IGIEDKATR---AQEVRALGAKFVEMHAG  136 (207)
T ss_dssp             EETTSCH---------------HHHHHHHHHHHHHTCEEE--EEC------TTCSSHHHH---HHHHHHTTCSEEEEECC
T ss_pred             EeccCCh---------------HHHHHHHHHHHHcCCceE--EEE------ecCCChHHH---HHHHHHhCCCEEEEEec
Confidence            7655432               123456677778888753  221      122245542   334456789988332  


Q ss_pred             cC---cCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894          269 DT---IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD  322 (398)
Q Consensus       269 DT---~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD  322 (398)
                      -+   .| ..|..  +.++.++..  ..++.+=+    |....|.-.++++||+.|=
T Consensus       137 ~~~~~~g-~~~~~--~~i~~~~~~--~~pi~v~G----GI~~~~~~~~~~aGad~vv  184 (207)
T 3ajx_A          137 LDEQAKP-GFDLN--GLLAAGEKA--RVPFSVAG----GVKVATIPAVQKAGAEVAV  184 (207)
T ss_dssp             HHHHTST-TCCTH--HHHHHHHHH--TSCEEEES----SCCGGGHHHHHHTTCSEEE
T ss_pred             ccccccC-CCchH--HHHHHhhCC--CCCEEEEC----CcCHHHHHHHHHcCCCEEE
Confidence            11   23 23444  556666542  23344422    3333488888999999664

>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}

Probab=96.69  E-value=0.56  Score=46.36  Aligned_cols=229  Identities=17%  Similarity=0.136  Sum_probs=136.8

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe-CCHhhHHHHHHcCCCEEEEecc
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT-PNLKGFEAAVAAGAKEVAIFAS  194 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~~  194 (398)
                      .+.+..++-+..|.++|.+.|.++.+.       .+++ +.+..+++.-++.+.+=. -+.+-...++++|++.+||   
T Consensus        43 ~D~~atv~Qi~~l~~aG~diVRvavp~-------~~~a-~al~~I~~~~~vPlvaDiHf~~~lal~a~e~G~dklRI---  111 (366)
T 3noy_A           43 HDVEATLNQIKRLYEAGCEIVRVAVPH-------KEDV-EALEEIVKKSPMPVIADIHFAPSYAFLSMEKGVHGIRI---  111 (366)
T ss_dssp             TCHHHHHHHHHHHHHTTCCEEEEECCS-------HHHH-HHHHHHHHHCSSCEEEECCSCHHHHHHHHHTTCSEEEE---
T ss_pred             cCHHHHHHHHHHHHHcCCCEEEeCCCC-------hHHH-HHHHHHHhcCCCCEEEeCCCCHHHHHHHHHhCCCeEEE---
Confidence            567788889999999999999999753       1222 334444433345554432 4666666789999999998   


Q ss_pred             CchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC------CCCCHHH----HHHHHHHHHhCCCCE
Q 015894          195 ASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE------GMVPPSK----VAYVSKQLYDMGCSE  264 (398)
Q Consensus       195 ~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~------~r~~~~~----l~~~a~~l~~~Gad~  264 (398)
                       |+-    |++.     -++++++++.||++|..++.-+.  +|+-+.      +..+++.    .++.++.+.++|.+.
T Consensus       112 -NPG----Nig~-----~~~~~~vv~~ak~~~~piRIGvN--~GSL~~~ll~~yg~~~~eamVeSAl~~~~~~e~~gf~~  179 (366)
T 3noy_A          112 -NPG----NIGK-----EEIVREIVEEAKRRGVAVRIGVN--SGSLEKDLLEKYGYPSAEALAESALRWSEKFEKWGFTN  179 (366)
T ss_dssp             -CHH----HHSC-----HHHHHHHHHHHHHHTCEEEEEEE--GGGCCHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCCC
T ss_pred             -CCc----ccCc-----hhHHHHHHHHHHHcCCCEEEecC--CcCCCHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCCCe
Confidence             332    4542     24567899999999999997666  454221      1124443    334667788889874


Q ss_pred             --EEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchH------HHHHHHHHH-hCC-CEEeeccccCCCCCCC
Q 015894          265 --ISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQA------LSNILASLQ-MGI-STVDSSVSGLGGCPYA  334 (398)
Q Consensus       265 --I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA------~ANalaAl~-aGa-~~VD~Sv~GlGecp~a  334 (398)
                        |.++-+    .+..+-...+.+.+.. +-||++-.-+- |..      -+-.+-++. .|. |.|-+|+.   +    
T Consensus       180 iviS~K~S----~v~~~i~ayr~la~~~-dyPLHlGvTEA-G~~~~G~ikSsigiG~LL~dGIGDTIRVSLt---~----  246 (366)
T 3noy_A          180 YKVSIKGS----DVLQNVRANLIFAERT-DVPLHIGITEA-GMGTKGIIKSSVGIGILLYMGIGDTVRVSLT---D----  246 (366)
T ss_dssp             EEEEEECS----SHHHHHHHHHHHHHHC-CCCEEECCSSC-CSHHHHHHHHHHHHHHHHHTTCCSEECCCCS---S----
T ss_pred             EEEeeecC----ChHHHHHHHHHHHhcc-CCCEEEccCCC-CCCcceeeehHHHHHHHHHhcccceEEEeCC---C----
Confidence              444443    3444444444444443 34565554443 443      333444555 375 67777766   1    


Q ss_pred             CCCCCCccHHHHHHHH---HhCCC--------------CCccChHHHHHHHHHHHHHh-CCCCCCCccccccc
Q 015894          335 KGASGNVATEDVVYML---NGLGV--------------RTNVDIRKLMIAGDFICKHL-GRTSGSKTAIALSK  389 (398)
Q Consensus       335 ~graGNa~lE~vv~~L---~~~Gi--------------~t~iDl~~L~~~~~~v~~~~-g~~~~~~~pivG~~  389 (398)
                            .|.||+-.+.   +.+|+              ++.+|+   .++++.+++.+ +++.|-+.++.|.-
T Consensus       247 ------~p~~Ev~va~~ILqslglR~~g~~~ISCPtCGRt~~dl---~~~~~~ie~~l~~~~~~lkVAVMGCv  310 (366)
T 3noy_A          247 ------DPVVEVETAYEILKSLGLRRRGVEIVACPTCGRIEVDL---PKVVKEVQEKLSGVKTPLKVAVMGCV  310 (366)
T ss_dssp             ------CHHHHHHHHHHHHHHTTSCCSSCEEEECCCCTTCCSCH---HHHHHHHHHHTTTCCSCCEEEEESSS
T ss_pred             ------CcHHHHHHHHHHHHhcCCCcCCCEEEECCCCCCccccH---HHHHHHHHHHHhCCCCCCEEEEEccc
Confidence                  2577775443   33333              355666   45555666555 34556677777653

>1vli_A Spore coat polysaccharide biosynthesis protein SP; 2636322, JCSG, protein structure initiative, BS SPSE, PSI; 2.38A {Bacillus subtilis} SCOP: b.85.1.1 c.1.10.6

Probab=96.67  E-value=0.095  Score=52.48  Aligned_cols=181  Identities=12%  Similarity=0.082  Sum_probs=116.7

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCC-----CCCc---c-cC-----C-------CCHHHHHHHHH-hccCCcEEEEe-
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFV-----SPKW---V-PQ-----L-------ADAKDVMAAIQ-NVEGARFPVLT-  172 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~-----~~~~---~-p~-----~-------~D~~~v~~~i~-~~~~~~l~~l~-  172 (398)
                      =+.++-.++++...++|.+.+-.+.+-     +|..   . +.     +       .-.++-+..+. .....-+..++ 
T Consensus        41 Gsle~A~~li~~Ak~aGAdavKfQ~~k~~tl~s~~~~~fq~~~~~~~~~ye~~~~~~l~~e~~~~L~~~~~~~Gi~~~st  120 (385)
T 1vli_A           41 GKLDQAFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWILPLLDYCREKQVIFLST  120 (385)
T ss_dssp             TCHHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGGGHHHHHHHHHHTTCEEECB
T ss_pred             ccHHHHHHHHHHHHHhCCCEEeeeeeccCcccCcchhhhccCCCCCccHHHHHHhcCCCHHHHHHHHHHHHHcCCcEEEc
Confidence            478899999999999999999998542     2321   0 00     0       00011111111 11112233343 


Q ss_pred             -CCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHH
Q 015894          173 -PNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVA  251 (398)
Q Consensus       173 -~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~  251 (398)
                       ....+++...+.|++.+.|...  +.              .+ ..+++++-+.|.+|-  |+       .+..+.+++.
T Consensus       121 pfD~~svd~l~~~~vd~~KIgS~--~~--------------~N-~pLL~~va~~gKPVi--LS-------tGmaTl~Ei~  174 (385)
T 1vli_A          121 VCDEGSADLLQSTSPSAFKIASY--EI--------------NH-LPLLKYVARLNRPMI--FS-------TAGAEISDVH  174 (385)
T ss_dssp             CCSHHHHHHHHTTCCSCEEECGG--GT--------------TC-HHHHHHHHTTCSCEE--EE-------CTTCCHHHHH
T ss_pred             cCCHHHHHHHHhcCCCEEEECcc--cc--------------cC-HHHHHHHHhcCCeEE--EE-------CCCCCHHHHH
Confidence             4677888888889999888532  11              11 134566666799875  33       2446899999


Q ss_pred             HHHHHHHhCCCCEEEEcc-CcCcCCHHHHHHH--HHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894          252 YVSKQLYDMGCSEISLGD-TIGVGTPGTVIPM--LEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       252 ~~a~~l~~~Gad~I~L~D-T~G~~~P~~v~~l--v~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S  324 (398)
                      ..++.+.+.|.+.|.|+- +.++=+|....+|  |..+++.+|..+|++=.|-. |- .+-++||+.+||++|+.=
T Consensus       175 ~Ave~i~~~Gn~~iiLlhc~s~YPtp~~~~nL~aI~~Lk~~f~~lpVG~SdHt~-G~-~~~~~AAvAlGA~iIEkH  248 (385)
T 1vli_A          175 EAWRTIRAEGNNQIAIMHCVAKYPAPPEYSNLSVIPMLAAAFPEAVIGFSDHSE-HP-TEAPCAAVRLGAKLIEKH  248 (385)
T ss_dssp             HHHHHHHTTTCCCEEEEEECSSSSCCGGGCCTTHHHHHHHHSTTSEEEEEECCS-SS-SHHHHHHHHTTCSEEEEE
T ss_pred             HHHHHHHHCCCCcEEEEeccCCCCCChhhcCHHHHHHHHHHcCCCCEEeCCCCC-Cc-hHHHHHHHHcCCCEEEeC
Confidence            999999999986666642 4445455554444  78888989778899866653 42 778899999999988654

>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1

Probab=96.66  E-value=0.066  Score=48.84  Aligned_cols=222  Identities=17%  Similarity=0.103  Sum_probs=116.1

Q ss_pred             CCCccc--CCCCCCCCC----HHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe--CC
Q 015894          103 VGPRDG--LQNEKNIVP----AVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT--PN  174 (398)
Q Consensus       103 ~TLRDG--~Q~~~~~~~----~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~n  174 (398)
                      .-+|||  .-..++.+.    .++-.++++.+.+.|++.|++.-.....  +......+.++.+++..++.+.+..  .+
T Consensus        11 id~~~g~~~~v~g~~~~~~~~~~~~~~~a~~~~~~G~d~i~v~~~~~~~--~~~~~~~~~i~~i~~~~~ipvi~~g~i~~   88 (253)
T 1h5y_A           11 LDIDGGAKVVVKGVNFQGIREVGDPVEMAVRYEEEGADEIAILDITAAP--EGRATFIDSVKRVAEAVSIPVLVGGGVRS   88 (253)
T ss_dssp             EEECGGGCEECTTCCCHHHHEEECHHHHHHHHHHTTCSCEEEEECCCCT--TTHHHHHHHHHHHHHHCSSCEEEESSCCS
T ss_pred             EEEcCCceEEEEcccccceeecccHHHHHHHHHHcCCCEEEEEeCCccc--cCCcccHHHHHHHHHhcCCCEEEECCCCC
Confidence            345777  333333332    2345789999999999999986432211  0000112334444433345554432  46


Q ss_pred             HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeee------ecCCCCCC-CC
Q 015894          175 LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIP-VRGYLSCV------VGCPVEGM-VP  246 (398)
Q Consensus       175 ~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~-v~~~l~~~------fg~~~~~r-~~  246 (398)
                      ..+++.++++|++.|.+-..                .+.....+.+.++++|.. +...+..-      .-....+. .+
T Consensus        89 ~~~~~~~~~~Gad~V~i~~~----------------~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~~~~~~~  152 (253)
T 1h5y_A           89 LEDATTLFRAGADKVSVNTA----------------AVRNPQLVALLAREFGSQSTVVAIDAKWNGEYYEVYVKGGREAT  152 (253)
T ss_dssp             HHHHHHHHHHTCSEEEESHH----------------HHHCTHHHHHHHHHHCGGGEEEEEEEEECSSSEEEEETTTTEEE
T ss_pred             HHHHHHHHHcCCCEEEEChH----------------HhhCcHHHHHHHHHcCCCcEEEEEEeecCCCcEEEEEeCCeecC
Confidence            78889999999999988532                111111223344555642 22222210      00000010 00


Q ss_pred             HHHHHHHHHHHHhCCCCEEEE--ccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchH-HHHHHHHHHhCCCEEee
Q 015894          247 PSKVAYVSKQLYDMGCSEISL--GDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQA-LSNILASLQMGISTVDS  323 (398)
Q Consensus       247 ~~~l~~~a~~l~~~Gad~I~L--~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA-~ANalaAl~aGa~~VD~  323 (398)
                      .....+.++.+.+.|++.|.+  .+..|..... -.++++.+++.. .+|+..=    -|.. ..++..++++||+.|=+
T Consensus       153 ~~~~~e~~~~~~~~G~d~i~~~~~~~~g~~~~~-~~~~i~~l~~~~-~~pvia~----GGi~~~~~~~~~~~~Ga~~v~v  226 (253)
T 1h5y_A          153 GLDAVKWAKEVEELGAGEILLTSIDRDGTGLGY-DVELIRRVADSV-RIPVIAS----GGAGRVEHFYEAAAAGADAVLA  226 (253)
T ss_dssp             EEEHHHHHHHHHHHTCSEEEEEETTTTTTCSCC-CHHHHHHHHHHC-SSCEEEE----SCCCSHHHHHHHHHTTCSEEEE
T ss_pred             CCCHHHHHHHHHhCCCCEEEEecccCCCCcCcC-CHHHHHHHHHhc-CCCEEEe----CCCCCHHHHHHHHHcCCcHHHH
Confidence            012334567778899999887  4443333221 134556666554 2344443    3443 36777788899986643


Q ss_pred             ccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCC
Q 015894          324 SVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRT  357 (398)
Q Consensus       324 Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t  357 (398)
                      .-.=+..         ..+++++...|++.|++.
T Consensus       227 gsal~~~---------~~~~~~~~~~l~~~g~~~  251 (253)
T 1h5y_A          227 ASLFHFR---------VLSIAQVKRYLKERGVEV  251 (253)
T ss_dssp             SHHHHTT---------SSCHHHHHHHHHHTTCBC
T ss_pred             HHHHHcC---------CCCHHHHHHHHHHcCCCC
Confidence            3211211         235789999998888753

>1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A

Probab=96.64  E-value=0.08  Score=50.30  Aligned_cols=194  Identities=15%  Similarity=0.126  Sum_probs=121.0

Q ss_pred             CCCHHHHHHHHHHHHhc--CCCEEEEecCCCCCcccCCCCHHHHHHHHH--hccCCcEEEEe--C----C----HhhHHH
Q 015894          115 IVPAVVKVELIKLLVSS--GLAVVEATSFVSPKWVPQLADAKDVMAAIQ--NVEGARFPVLT--P----N----LKGFEA  180 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~a--Gv~~IEvG~~~~~~~~p~~~D~~~v~~~i~--~~~~~~l~~l~--~----n----~~~ie~  180 (398)
                      .-+.++..++++...+.  |+..+-+    +|.|+|      ...+.++  ..+++++.+.+  |    +    ...++.
T Consensus        24 ~~t~~~i~~lc~eA~~~~~~~~aVcV----~p~~v~------~a~~~L~~~g~~~v~v~tVigFP~G~~~~~~Kv~E~~~   93 (260)
T 1p1x_A           24 DDTDEKVIALCHQAKTPVGNTAAICI----YPRFIP------IARKTLKEQGTPEIRIATVTNFPHGNDDIDIALAETRA   93 (260)
T ss_dssp             TCCHHHHHHHHHHTEETTEECSEEEC----CGGGHH------HHHHHHHHTTCTTSEEEEEESTTTCCSCHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhccCCceEEEE----CHHHHH------HHHHHhhhcCCCCceEEEEeCCCCCCCcHHHHHHHHHH
Confidence            45788888888888887  8887765    454443      2334444  22256776555  2    1    136788


Q ss_pred             HHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC
Q 015894          181 AVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM  260 (398)
Q Consensus       181 a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~  260 (398)
                      |++.|+++|.+.+.....     ..-..+...+.+..+.+.|.+.|..+-+-|...      ..++++.+...++...++
T Consensus        94 Av~~GAdEIDmVinig~l-----~~g~~~~v~~ei~~v~~a~~~~g~~lKvIlEt~------~L~d~e~i~~a~~ia~ea  162 (260)
T 1p1x_A           94 AIAYGADEVDVVFPYRAL-----MAGNEQVGFDLVKACKEACAAANVLLKVIIETG------ELKDEALIRKASEISIKA  162 (260)
T ss_dssp             HHHHTCSEEEEECCHHHH-----HTTCCHHHHHHHHHHHHHHHHTTCEEEEECCHH------HHCSHHHHHHHHHHHHHT
T ss_pred             HHHcCCCEEEEeccHHhh-----hCCCHHHHHHHHHHHHHHhcccCCeEEEEEecc------cCCcHHHHHHHHHHHHHh
Confidence            999999999998875432     123456788889888998887777655434321      124556577889999999


Q ss_pred             CCCEEEEcc--CcCcCCHHHHHHHHHHHHhhC-CCCeEEEEeC---CccchHHHHHHHHH-HhCCCEEeeccccCCC
Q 015894          261 GCSEISLGD--TIGVGTPGTVIPMLEAVLDAV-PVDKLAVHFH---DTYGQALSNILASL-QMGISTVDSSVSGLGG  330 (398)
Q Consensus       261 Gad~I~L~D--T~G~~~P~~v~~lv~~l~~~~-p~~~l~~H~H---nd~GlA~ANalaAl-~aGa~~VD~Sv~GlGe  330 (398)
                      |+|.|--.-  +.|..+|++++-+.+.+++.. .. ++++..-   .++--|++-..++. ..|.+|++....=+|-
T Consensus       163 GADfVKTSTGf~~~gAt~e~v~lm~~~I~~~~~g~-~v~VKaaGGIrt~~~al~~i~aga~~lG~~w~~~~~~RiGt  238 (260)
T 1p1x_A          163 GADFIKTSTGKVAVNATPESARIMMEVIRDMGVEK-TVGFKPAGGVRTAEDAQKYLAIADELFGADWADARHYRFGA  238 (260)
T ss_dssp             TCSEEECCCSCSSCCCCHHHHHHHHHHHHHHTCTT-TCEEECBSSCCSHHHHHHHHHHHHHHHCTTSCSTTTBCEEE
T ss_pred             CCCEEEeCCCCCCCCCCHHHHHHHHHHHHHhcCCC-CceEEEeCCCCCHHHHHHHHHhhhhhccccccccCceEeec
Confidence            999876552  235669999998888777543 21 2444322   12223333322222 2466677666665554

>3ngf_A AP endonuclease, family 2; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 1.80A {Brucella melitensis biovar abortus} SCOP: c.1.15.0

Probab=96.63  E-value=0.035  Score=51.59  Aligned_cols=185  Identities=13%  Similarity=0.073  Sum_probs=104.8

Q ss_pred             HHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe-C--C----------------------H
Q 015894          121 KVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT-P--N----------------------L  175 (398)
Q Consensus       121 k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~-~--n----------------------~  175 (398)
                      -.+.++.+.++|++.||+..+..       .+.+++.+.+++ .++++.++. +  +                      .
T Consensus        25 ~~~~l~~~~~~G~~~vEl~~~~~-------~~~~~~~~~l~~-~gl~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~   96 (269)
T 3ngf_A           25 FLERFRLAAEAGFGGVEFLFPYD-------FDADVIARELKQ-HNLTQVLFNMPPGDWAAGERGMAAISGREQEFRDNVD   96 (269)
T ss_dssp             HHHHHHHHHHTTCSEEECSCCTT-------SCHHHHHHHHHH-TTCEEEEEECCCSCTTTTCCBCTTCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEecCCcc-------CCHHHHHHHHHH-cCCcEEEEecCCCccccCCCCcCCCccHHHHHHHHHH
Confidence            34577788899999999986421       356666666653 255555432 1  0                      0


Q ss_pred             hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCH----HHHHHHHHHHHHHHHhCCCcEEEEEeeeec--CCCCCCCCHHH
Q 015894          176 KGFEAAVAAGAKEVAIFASASESFSKSNINCTI----EDSLIRYRDVALAARELSIPVRGYLSCVVG--CPVEGMVPPSK  249 (398)
Q Consensus       176 ~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~----~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg--~~~~~r~~~~~  249 (398)
                      +.++.|.+.|++.|.+... .+      .+.+.    +...+.+.++.++|++.|+.+.  +...-.  -|...-.+++.
T Consensus        97 ~~i~~A~~lGa~~v~~~~g-~~------~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~--lE~~n~~~~~~~~~~~~~~  167 (269)
T 3ngf_A           97 IALHYALALDCRTLHAMSG-IT------EGLDRKACEETFIENFRYAADKLAPHGITVL--VEPLNTRNMPGYFIVHQLE  167 (269)
T ss_dssp             HHHHHHHHTTCCEEECCBC-BC------TTSCHHHHHHHHHHHHHHHHHHHGGGTCEEE--ECCCCTTTSTTBSCCCHHH
T ss_pred             HHHHHHHHcCCCEEEEccC-CC------CCCCHHHHHHHHHHHHHHHHHHHHHcCCEEE--EeeCCcccCccchhcCHHH
Confidence            1255677889999987554 21      12233    3455556678888899998764  221000  00111246666


Q ss_pred             HHHHHHHHHhCCCCEEE-EccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccC
Q 015894          250 VAYVSKQLYDMGCSEIS-LGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGL  328 (398)
Q Consensus       250 l~~~a~~l~~~Gad~I~-L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~Gl  328 (398)
                      +.++++.+   +.+.+. .-|+.=...-.  .+....++. +.+--..+|++|..|                        
T Consensus       168 ~~~l~~~v---~~~~vg~~~D~~h~~~~g--~d~~~~l~~-~~~~i~~vHl~D~~~------------------------  217 (269)
T 3ngf_A          168 AVGLVKRV---NRPNVAVQLDLYHAQIMD--GDLTRLIEK-MNGAFSHVQIASVPD------------------------  217 (269)
T ss_dssp             HHHHHHHH---CCTTEEEEEEHHHHHHHT--CCHHHHHHH-TTTSEEEEEECCTTT------------------------
T ss_pred             HHHHHHHh---CCCCCCeEEEhhhHHhhC--CCHHHHHHH-hhhhEEEEEEecCCC------------------------
Confidence            66666544   433332 33543111100  022333333 333347899999753                        


Q ss_pred             CCCCCCCCCCCCccHHHHHHHHHhCCCC
Q 015894          329 GGCPYAKGASGNVATEDVVYMLNGLGVR  356 (398)
Q Consensus       329 Gecp~a~graGNa~lE~vv~~L~~~Gi~  356 (398)
                       .+  .+| .|..+...++..|++.|++
T Consensus       218 -r~--~~G-~G~id~~~~~~~L~~~gy~  241 (269)
T 3ngf_A          218 -RH--EPD-EGELNYPYLFSVLESVGYR  241 (269)
T ss_dssp             -CC--CTT-SSSBCHHHHHHHHHHTTCC
T ss_pred             -CC--CCC-CCccCHHHHHHHHHHcCCC
Confidence             11  133 7899999999999998875

>1to3_A Putative aldolase YIHT; beta-alpha barrel, structural genomics, PSI, protein structure initiative; 2.70A {Salmonella typhimurium} SCOP: c.1.10.1

Probab=96.62  E-value=0.072  Score=51.60  Aligned_cols=139  Identities=10%  Similarity=0.014  Sum_probs=93.7

Q ss_pred             hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCH-HHHHHHH
Q 015894          176 KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPP-SKVAYVS  254 (398)
Q Consensus       176 ~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~-~~l~~~a  254 (398)
                      ..++.+++.|++.|.+.+....       ..+..+.++.+.++++.|++.|+.+.+.+- .-|.......++ +.+.+.+
T Consensus       112 ~~ve~a~~~GAdaV~vlv~~~~-------d~~~~~~~~~i~~v~~~~~~~G~p~lv~~~-~~g~~v~~~~~~~~~v~~aa  183 (304)
T 1to3_A          112 INAQAVKRDGAKALKLLVLWRS-------DEDAQQRLNMVKEFNELCHSNGLLSIIEPV-VRPPRCGDKFDREQAIIDAA  183 (304)
T ss_dssp             CCHHHHHHTTCCEEEEEEEECT-------TSCHHHHHHHHHHHHHHHHTTTCEEEEEEE-ECCCSSCSCCCHHHHHHHHH
T ss_pred             hhHHHHHHcCCCEEEEEEEcCC-------CccHHHHHHHHHHHHHHHHHcCCcEEEEEE-CCCCccccCCChhHHHHHHH
Confidence            5688999999998875432211       012357889999999999999999765432 222222222456 8888889


Q ss_pred             HHHHhCCCCEEEEccC-cCcCCHHHHHHHHHHHHhhCCCCe-EEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          255 KQLYDMGCSEISLGDT-IGVGTPGTVIPMLEAVLDAVPVDK-LAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       255 ~~l~~~Gad~I~L~DT-~G~~~P~~v~~lv~~l~~~~p~~~-l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      +++.++|+|.|.+.=+ .|...++.+.++++......+ .| |.+=+=.+.-..+.+.-.++++|++.|-+
T Consensus       184 ~~a~~lGaD~iKv~~~~~~~g~~~~~~~vv~~~~~~~~-~P~Vv~aGG~~~~~~~~~~~~a~~aGa~Gv~v  253 (304)
T 1to3_A          184 KELGDSGADLYKVEMPLYGKGARSDLLTASQRLNGHIN-MPWVILSSGVDEKLFPRAVRVAMEAGASGFLA  253 (304)
T ss_dssp             HHHTTSSCSEEEECCGGGGCSCHHHHHHHHHHHHHTCC-SCEEECCTTSCTTTHHHHHHHHHHTTCCEEEE
T ss_pred             HHHHHcCCCEEEeCCCcCCCCCHHHHHHHHHhccccCC-CCeEEEecCCCHHHHHHHHHHHHHcCCeEEEE
Confidence            9999999999877553 233478888888887555433 24 33322225556667888889999976643

>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*

Probab=96.58  E-value=0.1  Score=48.32  Aligned_cols=177  Identities=16%  Similarity=0.132  Sum_probs=115.4

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe--C----C----HhhHHHHHHc
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT--P----N----LKGFEAAVAA  184 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~----n----~~~ie~a~~~  184 (398)
                      .-+.++..++++...+.|++.+-+.    |.|++      ...+.++. .++++...+  |    +    ...++.|++.
T Consensus        15 ~~t~~~i~~l~~~a~~~~~~aVcv~----p~~v~------~~~~~l~~-~~v~v~~vigFP~G~~~~~~k~~e~~~Ai~~   83 (220)
T 1ub3_A           15 TATLEEVAKAAEEALEYGFYGLCIP----PSYVA------WVRARYPH-APFRLVTVVGFPLGYQEKEVKALEAALACAR   83 (220)
T ss_dssp             TCCHHHHHHHHHHHHHHTCSEEECC----GGGHH------HHHHHCTT-CSSEEEEEESTTTCCSCHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHhCCCEEEEC----HHHHH------HHHHHhCC-CCceEEEEecCCCCCCchHHHHHHHHHHHHc
Confidence            4578889999999999999988863    43332      11222221 235555443  2    1    1367899999


Q ss_pred             CCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE
Q 015894          185 GAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE  264 (398)
Q Consensus       185 Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~  264 (398)
                      |++.|.+.+.....     ..-+.++.++.+..+++.+.+.+++|-  +.  .     ...+++.+...++.+.++|+|.
T Consensus        84 GAdevd~vinig~~-----~~g~~~~v~~ei~~v~~a~~~~~lkvI--le--t-----~~l~~e~i~~a~~ia~eaGADf  149 (220)
T 1ub3_A           84 GADEVDMVLHLGRA-----KAGDLDYLEAEVRAVREAVPQAVLKVI--LE--T-----GYFSPEEIARLAEAAIRGGADF  149 (220)
T ss_dssp             TCSEEEEECCHHHH-----HTTCHHHHHHHHHHHHHHSTTSEEEEE--CC--G-----GGSCHHHHHHHHHHHHHHTCSE
T ss_pred             CCCEEEecccchhh-----hCCCHHHHHHHHHHHHHHHcCCCceEE--Ee--c-----CCCCHHHHHHHHHHHHHhCCCE
Confidence            99999998765432     122567788888888888765444442  21  1     2346888999999999999998


Q ss_pred             EEEcc--CcCcCCHHHHHHHHHHHHhhCCCCeEEEEe--CCccchHHHHHHHHHHhCCCEEeec
Q 015894          265 ISLGD--TIGVGTPGTVIPMLEAVLDAVPVDKLAVHF--HDTYGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       265 I~L~D--T~G~~~P~~v~~lv~~l~~~~p~~~l~~H~--Hnd~GlA~ANalaAl~aGa~~VD~S  324 (398)
                      |--.=  +.|..+|+++..+.+.+...   ++|-.=+  + |.    ..+++-+++|+++|-+|
T Consensus       150 VKTsTGf~~~gat~~dv~~m~~~vg~~---v~VkaaGGir-t~----~~al~~i~aGa~RiG~S  205 (220)
T 1ub3_A          150 LKTSTGFGPRGASLEDVALLVRVAQGR---AQVKAAGGIR-DR----ETALRMLKAGASRLGTS  205 (220)
T ss_dssp             EECCCSSSSCCCCHHHHHHHHHHHTTS---SEEEEESSCC-SH----HHHHHHHHTTCSEEEET
T ss_pred             EEeCCCCCCCCCCHHHHHHHHHhhCCC---CeEEEECCCC-CH----HHHHHHHHCCCcccchh
Confidence            86552  34667888888877665222   2332222  2 32    56667778999988665

>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2

Probab=96.51  E-value=0.085  Score=50.81  Aligned_cols=189  Identities=14%  Similarity=0.153  Sum_probs=125.8

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh---ccCCcEEEE---eCCHhhHHHHHHcCCCE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN---VEGARFPVL---TPNLKGFEAAVAAGAKE  188 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~---~~~~~l~~l---~~n~~~ie~a~~~Gv~~  188 (398)
                      ....+....++++-.+.+-+.|=-.++..-++.    ..+.+...++.   ..++.+...   +.+.+.+..++++|...
T Consensus        25 v~n~e~~~avl~AAe~~~sPvIlq~s~~~~~y~----g~~~~~~~v~~~a~~~~VPValHlDHg~~~e~i~~ai~~GFtS  100 (286)
T 1gvf_A           25 IHNAETIQAILEVCSEMRSPVILAGTPGTFKHI----ALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRS  100 (286)
T ss_dssp             CCSHHHHHHHHHHHHHHTCCCEEEECTTHHHHS----CHHHHHHHHHHHHHHTTSCBEEEEEEECCHHHHHHHHHTTCCE
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEECChhHHhhc----CHHHHHHHHHHHHHhCCCcEEEEcCCCCCHHHHHHHHHcCCCe
Confidence            567888888999999999998766554321221    23333333332   123444443   24678899999999988


Q ss_pred             EEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC--------CCCCHHHHHHHHHHHHhC
Q 015894          189 VAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE--------GMVPPSKVAYVSKQLYDM  260 (398)
Q Consensus       189 v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~--------~r~~~~~l~~~a~~l~~~  260 (398)
                      |.+=.|          ..+.+|+++.-++++++|++.|+.|++.|-..-|.++.        ..++|+...++++   +.
T Consensus       101 VMiDgS----------~lp~eeNi~~Tk~vv~~ah~~gvsVEaElG~vgg~ed~~~~~~~~~~~T~Peea~~Fv~---~T  167 (286)
T 1gvf_A          101 AMIDGS----------HFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVE---LT  167 (286)
T ss_dssp             EEECCT----------TSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCC-----------CCSSCCHHHHHHHHH---HH
T ss_pred             EEECCC----------CCCHHHHHHHHHHHHHHHHHcCCEEEEEEeeccCcccCcccccccccCCCHHHHHHHHH---HH
Confidence            876322          23578999999999999999999999888776443432        2388988877765   47


Q ss_pred             CCCEEEEc--cCcCcC--CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          261 GCSEISLG--DTIGVG--TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       261 Gad~I~L~--DT~G~~--~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      |+|.+.++  -.=|.-  .|.==.++++.+++..+ +||.+|+=  -|........|++.|+.-|+.
T Consensus       168 gvD~LAvaiGt~HG~Y~~~p~Ld~~~L~~I~~~~~-vpLVlHGg--SG~~~e~i~~ai~~Gv~KiNi  231 (286)
T 1gvf_A          168 GVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVD-VPLVLHGA--SDVPDEFVRRTIELGVTKVNV  231 (286)
T ss_dssp             CCSEEEECSSCCSSCCSSCCCCCHHHHHHHHHHCC-SCEEECCC--TTCCHHHHHHHHHTTEEEEEE
T ss_pred             CCCEEEeecCccccCcCCCCccCHHHHHHHHHhcC-CCEEEECC--CCCCHHHHHHHHHCCCeEEEE
Confidence            89954433  222221  23333456777888776 57888874  477778899999999876643

>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1

Probab=96.51  E-value=0.12  Score=47.77  Aligned_cols=152  Identities=18%  Similarity=0.183  Sum_probs=101.0

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHH-HhccCCcEEEE-eCCHhhHHHHHHcCCCEEEEecc
Q 015894          117 PAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAI-QNVEGARFPVL-TPNLKGFEAAVAAGAKEVAIFAS  194 (398)
Q Consensus       117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i-~~~~~~~l~~l-~~n~~~ie~a~~~Gv~~v~i~~~  194 (398)
                      +.++-+++++.|.+.|++.||++.-. +       +..+.++.+ ++.++..+.+= +-+.++++.|+++|++.|+.-  
T Consensus        36 ~~~~~~~~~~al~~gGv~~iel~~k~-~-------~~~~~i~~l~~~~~~~~igagtvl~~d~~~~A~~aGAd~v~~p--  105 (225)
T 1mxs_A           36 REEDILPLADALAAGGIRTLEVTLRS-Q-------HGLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVVTP--  105 (225)
T ss_dssp             CGGGHHHHHHHHHHTTCCEEEEESSS-T-------HHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEECS--
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEecCC-c-------cHHHHHHHHHHhCcccEEeeCeEeeHHHHHHHHHCCCCEEEeC--
Confidence            45566899999999999999999532 1       233445534 35666554332 235688999999999999742  


Q ss_pred             CchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcC
Q 015894          195 ASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVG  274 (398)
Q Consensus       195 ~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~  274 (398)
                      -.+                  .++++.++++|...-.      |     -.+++++    .++.++|+|.|.+       
T Consensus       106 ~~d------------------~~v~~~~~~~g~~~i~------G-----~~t~~e~----~~A~~~Gad~vk~-------  145 (225)
T 1mxs_A          106 GIT------------------EDILEAGVDSEIPLLP------G-----ISTPSEI----MMGYALGYRRFKL-------  145 (225)
T ss_dssp             SCC------------------HHHHHHHHHCSSCEEC------E-----ECSHHHH----HHHHTTTCCEEEE-------
T ss_pred             CCC------------------HHHHHHHHHhCCCEEE------e-----eCCHHHH----HHHHHCCCCEEEE-------
Confidence            111                  2567888899987642      1     1345543    4456899999988       


Q ss_pred             CHHH-H--HHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHH-hCCCEEe
Q 015894          275 TPGT-V--IPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQ-MGISTVD  322 (398)
Q Consensus       275 ~P~~-v--~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~-aGa~~VD  322 (398)
                      .|.. +  .++++.++..+|.+|+-.=    =|.-..|+-.-+. +|++.|=
T Consensus       146 FPa~~~~G~~~lk~i~~~~~~ipvvai----GGI~~~N~~~~l~~~Ga~~v~  193 (225)
T 1mxs_A          146 FPAEISGGVAAIKAFGGPFGDIRFCPT----GGVNPANVRNYMALPNVMCVG  193 (225)
T ss_dssp             TTHHHHTHHHHHHHHHTTTTTCEEEEB----SSCCTTTHHHHHHSTTBCCEE
T ss_pred             ccCccccCHHHHHHHHhhCCCCeEEEE----CCCCHHHHHHHHhccCCEEEE
Confidence            4533 3  4778888888877676442    3444567777888 6888664

>2wqp_A Polysialic acid capsule biosynthesis protein SIAC; NEUB, inhibitor, TIM barrel, sialic acid synthase, transfera; HET: WQP; 1.75A {Neisseria meningitidis} PDB: 2zdr_A 1xuz_A* 1xuu_A 3cm4_A

Probab=96.50  E-value=0.12  Score=50.99  Aligned_cols=179  Identities=15%  Similarity=0.145  Sum_probs=117.4

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCC-----CCCc---cc-----CC-------CCHHHHHHHHH---hccCCcEEEEe
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFV-----SPKW---VP-----QL-------ADAKDVMAAIQ---NVEGARFPVLT  172 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~-----~~~~---~p-----~~-------~D~~~v~~~i~---~~~~~~l~~l~  172 (398)
                      =+.++-.++++...++|.+.+-.+.|-     +|..   .+     +.       .-.++-+..+.   +-.++.+..=.
T Consensus        32 gs~e~a~~li~~ak~aGadavKfq~~k~~tl~s~~~~~fq~~~~~~~~y~~~~~~~l~~e~~~~L~~~~~~~Gi~~~st~  111 (349)
T 2wqp_A           32 GSLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEYVESKGMIFISTL  111 (349)
T ss_dssp             TCHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             CCHHHHHHHHHHHHHhCCCEEeeeecccccccCcchhccccCCCCccHHHHHHHhCCCHHHHHHHHHHHHHhCCeEEEee
Confidence            378999999999999999999998542     2221   10     00       00122222222   12344444444


Q ss_pred             CCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH
Q 015894          173 PNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAY  252 (398)
Q Consensus       173 ~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~  252 (398)
                      ....+++...+.|++.+.|...  +.        +   .+    .+++++-+.|.+|-  |+       .+..+.+++..
T Consensus       112 ~d~~svd~l~~~~v~~~KI~S~--~~--------~---n~----~LL~~va~~gkPvi--Ls-------tGmat~~Ei~~  165 (349)
T 2wqp_A          112 FSRAAALRLQRMDIPAYKIGSG--EC--------N---NY----PLIKLVASFGKPII--LS-------TGMNSIESIKK  165 (349)
T ss_dssp             CSHHHHHHHHHHTCSCEEECGG--GT--------T---CH----HHHHHHHTTCSCEE--EE-------CTTCCHHHHHH
T ss_pred             CCHHHHHHHHhcCCCEEEECcc--cc--------c---CH----HHHHHHHhcCCeEE--EE-------CCCCCHHHHHH
Confidence            5788899888899999998532  11        1   11    34566666788875  33       24458999999


Q ss_pred             HHHHHHhCCCCEEEEc-cCcCcCCHHHHHHH--HHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894          253 VSKQLYDMGCSEISLG-DTIGVGTPGTVIPM--LEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       253 ~a~~l~~~Gad~I~L~-DT~G~~~P~~v~~l--v~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S  324 (398)
                      .++.+.+.|.+ |.|+ =+.++=+|....+|  |..+++.+|..+|++=.|-. |  .+-++||+.+||++|+.=
T Consensus       166 Ave~i~~~G~~-iiLlhc~s~Yp~~~~~~nL~ai~~lk~~f~~lpVg~sdHt~-G--~~~~~AAvAlGA~iIEkH  236 (349)
T 2wqp_A          166 SVEIIREAGVP-YALLHCTNIYPTPYEDVRLGGMNDLSEAFPDAIIGLSDHTL-D--NYACLGAVALGGSILERH  236 (349)
T ss_dssp             HHHHHHHHTCC-EEEEECCCCSSCCGGGCCTHHHHHHHHHCTTSEEEEECCSS-S--SHHHHHHHHHTCCEEEEE
T ss_pred             HHHHHHHcCCC-EEEEeccCCCCCChhhcCHHHHHHHHHHCCCCCEEeCCCCC-c--HHHHHHHHHhCCCEEEeC
Confidence            99999999984 4443 24445445554443  78888888778999866653 4  788899999999988543

>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2

Probab=96.49  E-value=0.028  Score=51.51  Aligned_cols=171  Identities=13%  Similarity=0.162  Sum_probs=97.6

Q ss_pred             HHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEE--EeCCH-hhHHHHHHcCCCEEEEecc-
Q 015894          119 VVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPV--LTPNL-KGFEAAVAAGAKEVAIFAS-  194 (398)
Q Consensus       119 ~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~n~-~~ie~a~~~Gv~~v~i~~~-  194 (398)
                      ....+.++.+.+.|++.|+++.... .++|.+....+..+.+++..+..+.+  ++.+. +.++.+.++|++.|.+... 
T Consensus        23 ~~~~~~i~~~~~~G~d~i~l~~~dg-~f~~~~~~~~~~i~~l~~~~~~~~~v~l~vnd~~~~v~~~~~~Gad~v~vh~~~  101 (230)
T 1rpx_A           23 SKLGEQVKAIEQAGCDWIHVDVMDG-RFVPNITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQ  101 (230)
T ss_dssp             GGHHHHHHHHHHTTCCCEEEEEEBS-SSSSCBCCCHHHHHHHGGGCCSCEEEEEESSSHHHHHHHHHHTTCSEEEEECST
T ss_pred             HHHHHHHHHHHHCCCCEEEEeeccC-CcccccccCHHHHHHHHhccCCcEEEEEEecCHHHHHHHHHHcCCCEEEEEecC
Confidence            3556788899999999999984110 01122222234555566443433333  22333 4688899999999988654 


Q ss_pred             -CchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcC-
Q 015894          195 -ASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIG-  272 (398)
Q Consensus       195 -~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G-  272 (398)
                       .++.                ..+.++.+++.|+.+...+.     |.   ++.+.+..+     ..++|.| +.++++ 
T Consensus       102 ~~~~~----------------~~~~~~~~~~~g~~ig~~~~-----p~---t~~e~~~~~-----~~~~d~v-l~~~~~p  151 (230)
T 1rpx_A          102 SSTIH----------------LHRTINQIKSLGAKAGVVLN-----PG---TPLTAIEYV-----LDAVDLV-LIMSVNP  151 (230)
T ss_dssp             TTCSC----------------HHHHHHHHHHTTSEEEEEEC-----TT---CCGGGGTTT-----TTTCSEE-EEESSCT
T ss_pred             ccchh----------------HHHHHHHHHHcCCcEEEEeC-----CC---CCHHHHHHH-----HhhCCEE-EEEEEcC
Confidence             3221                23456777788887653332     11   223332222     2578855 355543 


Q ss_pred             -c---CCHHHHHHHHHHHHhhCC----CCeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894          273 -V---GTPGTVIPMLEAVLDAVP----VDKLAVHFHDTYGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       273 -~---~~P~~v~~lv~~l~~~~p----~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S  324 (398)
                       .   -.+....+.++.+++..+    ..++.+    +.|....|+-.++++|++.|.+.
T Consensus       152 g~~g~~~~~~~~~~i~~l~~~~~~~~~~~pi~v----~GGI~~~n~~~~~~aGad~vvvg  207 (230)
T 1rpx_A          152 GFGGQSFIESQVKKISDLRKICAERGLNPWIEV----DGGVGPKNAYKVIEAGANALVAG  207 (230)
T ss_dssp             TCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEE----ESSCCTTTHHHHHHHTCCEEEES
T ss_pred             CCCCccccHHHHHHHHHHHHHHHhcCCCceEEE----ECCCCHHHHHHHHHcCCCEEEEC
Confidence             2   123344455666665442    445544    44555578888889999988876

>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...

Probab=96.46  E-value=0.16  Score=49.06  Aligned_cols=200  Identities=16%  Similarity=0.124  Sum_probs=114.6

Q ss_pred             cEEEeCCC---cccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCC-CCCcccCCCCHHHHHHHH---Hhc---cCCc
Q 015894           98 VKIVEVGP---RDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFV-SPKWVPQLADAKDVMAAI---QNV---EGAR  167 (398)
Q Consensus        98 I~i~D~TL---RDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~-~~~~~p~~~D~~~v~~~i---~~~---~~~~  167 (398)
                      +-|+.+|+   -||++    .++.+..++.++.+.+.|.+.|++|.-. .|...+ ....+|+.+.+   +.+   .++.
T Consensus        43 MgilNvTPDSFsdgg~----~~~~~~a~~~a~~~v~~GAdiIDIGgeStrPga~~-v~~~eE~~RvvpvI~~l~~~~~vp  117 (297)
T 1tx2_A           43 MGILNVTPDSFSDGGS----YNEVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAK-VSVEEEIKRVVPMIQAVSKEVKLP  117 (297)
T ss_dssp             EEECCCCCCTTCSSCB----HHHHHHHHHHHHHHHHTTCSEEEEESCC----CCC-CCHHHHHHHHHHHHHHHHHHSCSC
T ss_pred             EEEEeCCCCccccCCc----cCCHHHHHHHHHHHHHcCCCEEEECCCcCCCCCCC-CCHHHHHHHHHHHHHHHHhcCCce
Confidence            45666666   44443    4567888999999999999999999643 233222 11223333333   322   2666


Q ss_pred             EEEEeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCC-
Q 015894          168 FPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVP-  246 (398)
Q Consensus       168 l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~-  246 (398)
                      ++.=+.+.+-+++|+++|++.|.=   +|..      +.        ..++.+.+++.|..+.  ++..-|.|. + .+ 
T Consensus       118 iSIDT~~~~V~~aAl~aGa~iINd---vsg~------~~--------d~~m~~~aa~~g~~vV--lmh~~G~p~-y-~d~  176 (297)
T 1tx2_A          118 ISIDTYKAEVAKQAIEAGAHIIND---IWGA------KA--------EPKIAEVAAHYDVPII--LMHNRDNMN-Y-RNL  176 (297)
T ss_dssp             EEEECSCHHHHHHHHHHTCCEEEE---TTTT------SS--------CTHHHHHHHHHTCCEE--EECCCSCCC-C-SSH
T ss_pred             EEEeCCCHHHHHHHHHcCCCEEEE---CCCC------CC--------CHHHHHHHHHhCCcEE--EEeCCCCCC-c-chH
Confidence            777677888899999999998743   2210      00        1244566778887765  443323332 1 01 


Q ss_pred             ----HHHHHHHHHHHHhCCCC--EEEEccCcCc-CCHHHHHHHHHHHHhhC-CCCeEEEEeC--------------Cccc
Q 015894          247 ----PSKVAYVSKQLYDMGCS--EISLGDTIGV-GTPGTVIPMLEAVLDAV-PVDKLAVHFH--------------DTYG  304 (398)
Q Consensus       247 ----~~~l~~~a~~l~~~Gad--~I~L~DT~G~-~~P~~v~~lv~~l~~~~-p~~~l~~H~H--------------nd~G  304 (398)
                          .+++.+.++.+.++|++  .|.|==-+|. -+.++-.++++.++..- .+.|+-+=..              +...
T Consensus       177 v~ev~~~l~~~i~~a~~~GI~~~~IilDPg~Gfgk~~~~n~~ll~~l~~l~~lg~Pvl~G~Srksfig~~~g~~~~~r~~  256 (297)
T 1tx2_A          177 MADMIADLYDSIKIAKDAGVRDENIILDPGIGFAKTPEQNLEAMRNLEQLNVLGYPVLLGTSRKSFIGHVLDLPVEERLE  256 (297)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTGGGGGGGCSCBEEECTTCHHHHHHHTCCGGGCHH
T ss_pred             HHHHHHHHHHHHHHHHHcCCChhcEEEeCCCCcCCCHHHHHHHHHHHHHHHhCCCCEEEEeccchhhhhhcCCCHHHhHH
Confidence                25677778888899987  4544322222 23455556666665321 1233333222              2223


Q ss_pred             hHHHHHHHHHHhCCCEEee
Q 015894          305 QALSNILASLQMGISTVDS  323 (398)
Q Consensus       305 lA~ANalaAl~aGa~~VD~  323 (398)
                      -.++.+..|+..|+++|.+
T Consensus       257 ~t~a~~~~a~~~ga~Ivrv  275 (297)
T 1tx2_A          257 GTGATVCLGIEKGCEFVRV  275 (297)
T ss_dssp             HHHHHHHHHHHTTCSEEEE
T ss_pred             HHHHHHHHHHHCCCcEEEe
Confidence            3345666677888998876

>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A

Probab=96.46  E-value=0.12  Score=48.33  Aligned_cols=192  Identities=18%  Similarity=0.168  Sum_probs=120.8

Q ss_pred             EEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe--C---C
Q 015894          100 IVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT--P---N  174 (398)
Q Consensus       100 i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~---n  174 (398)
                      ++|-|+      .+-.-+.++..++++...+.|+..+-+    +|.|+|      ... .++ -.++++...+  |   +
T Consensus        16 ~IDhTl------L~p~~t~~~i~~lc~eA~~~~~~aVcV----~p~~v~------~a~-~l~-~~~v~v~tVigFP~G~~   77 (231)
T 3ndo_A           16 LVDHTL------LKPEATPSDVTALVDEAADLGVFAVCV----SPPLVS------VAA-GVA-PSGLAIAAVAGFPSGKH   77 (231)
T ss_dssp             TEEEEC------CCTTCCHHHHHHHHHHHHHHTCSEEEE----CGGGHH------HHH-HHC-CTTCEEEEEESTTTCCS
T ss_pred             hcCccc------CCCCCCHHHHHHHHHHHHHhCCcEEEE----CHHHHH------HHH-Hhc-CCCCeEEEEecCCCCCC
Confidence            466666      122567888889999999999998887    344443      112 222 1345665544  2   1


Q ss_pred             -----HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHH
Q 015894          175 -----LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSK  249 (398)
Q Consensus       175 -----~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~  249 (398)
                           ....+.|++.|+++|.+.+......     .-+.+...+.+..+++.+.  |..+-  +....+ ......+++.
T Consensus        78 ~~~~K~~E~~~Ai~~GAdEIDmVinig~lk-----~g~~~~v~~ei~~v~~a~~--~~~lK--vIiEt~-~L~~~~t~ee  147 (231)
T 3ndo_A           78 VPGIKATEAELAVAAGATEIDMVIDVGAAL-----AGDLDAVSADITAVRKAVR--AATLK--VIVESA-ALLEFSGEPL  147 (231)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEEECCHHHHH-----TTCHHHHHHHHHHHHHHTT--TSEEE--EECCHH-HHHHHTCHHH
T ss_pred             cHHHHHHHHHHHHHcCCCEEEEEeehHhhh-----cccHHHHHHHHHHHHHHcc--CCceE--EEEECc-ccCCCCCHHH
Confidence                 1356789999999999988754321     2356778888888887774  44443  222221 1100127888


Q ss_pred             HHHHHHHHHhCCCCEEEEcc--C-cCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeecc
Q 015894          250 VAYVSKQLYDMGCSEISLGD--T-IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSV  325 (398)
Q Consensus       250 l~~~a~~l~~~Gad~I~L~D--T-~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv  325 (398)
                      +...++.+.++|+|.|--.-  + .|..++++++.+-+.+...     +.+..-=-.- -...+++-+++||++|-+|.
T Consensus       148 i~~a~~ia~~aGADfVKTSTGf~~~~gAt~edv~lm~~~v~~~-----v~VKaaGGIr-t~~~a~~~i~aGa~RiGtS~  220 (231)
T 3ndo_A          148 LADVCRVARDAGADFVKTSTGFHPSGGASVQAVEIMARTVGER-----LGVKASGGIR-TAEQAAAMLDAGATRLGLSG  220 (231)
T ss_dssp             HHHHHHHHHHTTCSEEECCCSCCTTCSCCHHHHHHHHHHHTTT-----SEEEEESSCC-SHHHHHHHHHTTCSEEEESS
T ss_pred             HHHHHHHHHHHCcCEEEcCCCCCCCCCCCHHHHHHHHHHhCCC-----ceEEEeCCCC-CHHHHHHHHHhcchhcccch
Confidence            99999999999999886553  2 4677888887766665432     3332211111 12677888899999987763

>2y5s_A DHPS, dihydropteroate synthase; transferase, folate biosynthesis; HET: 78H; 1.95A {Burkholderia cenocepacia} PDB: 2y5j_A*

Probab=96.43  E-value=0.27  Score=47.45  Aligned_cols=202  Identities=16%  Similarity=0.178  Sum_probs=112.9

Q ss_pred             cEEEeCCC---cccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCC-CCCcccCCCCHHHHHHHH---Hhcc--CCcE
Q 015894           98 VKIVEVGP---RDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFV-SPKWVPQLADAKDVMAAI---QNVE--GARF  168 (398)
Q Consensus        98 I~i~D~TL---RDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~-~~~~~p~~~D~~~v~~~i---~~~~--~~~l  168 (398)
                      +-|+-+|+   =||++    .++.+..++.+..+.+.|.+.|++|.-. .|..-| ....+|+.+.+   +.+.  ++.+
T Consensus        26 MgilNvTPDSFsdgg~----~~~~~~a~~~a~~~v~~GAdiIDIGgeSTrPga~~-v~~~eE~~Rv~pvi~~l~~~~vpi  100 (294)
T 2y5s_A           26 MGILNATPDSFSDGGR----FLARDDALRRAERMIAEGADLLDIGGESTRPGAPP-VPLDEELARVIPLVEALRPLNVPL  100 (294)
T ss_dssp             EEEEECCC--------------CTTHHHHHHHHHHHTTCSEEEEESSCCSTTCCC-CCHHHHHHHHHHHHHHHGGGCSCE
T ss_pred             EEEEeCCCCCCCCCCC----cCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCC-CCHHHHHHHHHHHHHHHhhCCCeE
Confidence            45666666   45554    3677888999999999999999999733 232211 21223333333   3333  5666


Q ss_pred             EEEeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCC-----
Q 015894          169 PVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEG-----  243 (398)
Q Consensus       169 ~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~-----  243 (398)
                      +.=+.+.+-+++|+++|++.|.=....+                  ..++.+.++++|..+.  ++..-|.|..-     
T Consensus       101 SIDT~~~~Va~aAl~aGa~iINdVsg~~------------------d~~m~~~~a~~~~~vV--lmh~~G~p~tm~~~~~  160 (294)
T 2y5s_A          101 SIDTYKPAVMRAALAAGADLINDIWGFR------------------QPGAIDAVRDGNSGLC--AMHMLGEPQTMQVGEP  160 (294)
T ss_dssp             EEECCCHHHHHHHHHHTCSEEEETTTTC------------------STTHHHHHSSSSCEEE--EECCCEETTTTEECCC
T ss_pred             EEECCCHHHHHHHHHcCCCEEEECCCCC------------------chHHHHHHHHhCCCEE--EECCCCCCccccccCC
Confidence            6666788889999999998775322111                  1244567788888765  45443333321     


Q ss_pred             CC-C-----HHHHHHHHHHHHhCCCC--EEEEccCcCcC-CH-HHHHHHHHHHHhh------CCCCeEEEEeCC------
Q 015894          244 MV-P-----PSKVAYVSKQLYDMGCS--EISLGDTIGVG-TP-GTVIPMLEAVLDA------VPVDKLAVHFHD------  301 (398)
Q Consensus       244 r~-~-----~~~l~~~a~~l~~~Gad--~I~L~DT~G~~-~P-~~v~~lv~~l~~~------~p~~~l~~H~Hn------  301 (398)
                      .+ +     .+++.+.++.+.++|++  .|.|==-+|.. ++ ++-.++++.+.+-      .++.|+-+=.-|      
T Consensus       161 ~y~dv~~ev~~~l~~~i~~a~~~Gi~~~~IilDPG~Gf~kt~~~~n~~ll~~l~~l~~~~~~~~g~Pvl~G~Srksfig~  240 (294)
T 2y5s_A          161 DYGDVVTDVRDFLAARAQALRDAGVAAERICVDPGFGFGKAVVDDNYALLAALPDTAPARPDGRAYPILAGMSRKSMLGA  240 (294)
T ss_dssp             CCSSHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSSCTTHHHHHHHHTGGGGSCBCTTSSBCCBEEECTTCHHHHT
T ss_pred             ccccHHHHHHHHHHHHHHHHHHcCCChhhEEEeCCCcccccchHHHHHHHHHHHHHHhccccCCCCCEEEEecccHHhhh
Confidence            11 1     45677778888899986  45443222221 34 5566666666542      233333332211      


Q ss_pred             ----c-----cchHHHHHHHHHHhCCCEEeec
Q 015894          302 ----T-----YGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       302 ----d-----~GlA~ANalaAl~aGa~~VD~S  324 (398)
                          +     ...-.+-+..|+..|+++|.+.
T Consensus       241 l~g~~~~~~R~~~t~a~~~~a~~~Ga~IvrvH  272 (294)
T 2y5s_A          241 VIGGKPPLERVAASVAAALCAVERGAAIVRVH  272 (294)
T ss_dssp             TTTSCCGGGCHHHHHHHHHHHHHTTCSEEEES
T ss_pred             hcCCCchhhhhHHHHHHHHHHHHcCCcEEEcC
Confidence                1     1233555566778888877653

>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}

Probab=96.39  E-value=0.09  Score=51.39  Aligned_cols=200  Identities=17%  Similarity=0.145  Sum_probs=99.5

Q ss_pred             cEEEeCCC---cccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCC-CCcccCCCCHHHHHHH---HHhc----cCC
Q 015894           98 VKIVEVGP---RDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVS-PKWVPQLADAKDVMAA---IQNV----EGA  166 (398)
Q Consensus        98 I~i~D~TL---RDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~-~~~~p~~~D~~~v~~~---i~~~----~~~  166 (398)
                      +-|+.+|.   =||++.    ++.+..++.++.+.+.|.+.|++|.-.. |.  +.....+|+.+.   ++.+    +++
T Consensus        45 MGIlNvTPDSFsdgg~~----~~~~~a~~~A~~~v~~GAdIIDIGgeSTrPG--~~v~~~eEl~Rv~pvI~~l~~~~~~v  118 (318)
T 2vp8_A           45 MAIVNRTPDSFYDKGAT----FSDAAARDAVHRAVADGADVIDVGGVKAGPG--ERVDVDTEITRLVPFIEWLRGAYPDQ  118 (318)
T ss_dssp             EEEEC------------------CHHHHHHHHHHHHTTCSEEEEC------------CHHHHHHHHHHHHHHHHHHSTTC
T ss_pred             EEEEeCCCCcccCCCcc----CCHHHHHHHHHHHHHCCCCEEEECCCcCCCC--CCCCHHHHHHHHHHHHHHHHhhCCCC
Confidence            44566655   566654    5778889999999999999999996432 32  112223333333   3322    366


Q ss_pred             cEEEEeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecC-CCCC--
Q 015894          167 RFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGC-PVEG--  243 (398)
Q Consensus       167 ~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~-~~~~--  243 (398)
                      .++.=+.+.+-+++|+++|++.|.=.....                  ..++.+.++++|..+.  ++..-|. |..-  
T Consensus       119 pISIDT~~~~VaeaAl~aGa~iINDVsg~~------------------d~~m~~vaa~~g~~vV--lmh~~G~~p~tmq~  178 (318)
T 2vp8_A          119 LISVDTWRAQVAKAACAAGADLINDTWGGV------------------DPAMPEVAAEFGAGLV--CAHTGGALPRTRPF  178 (318)
T ss_dssp             EEEEECSCHHHHHHHHHHTCCEEEETTSSS------------------STTHHHHHHHHTCEEE--EECC----------
T ss_pred             eEEEeCCCHHHHHHHHHhCCCEEEECCCCC------------------chHHHHHHHHhCCCEE--EECCCCCCcccccc
Confidence            666666788889999999999665322111                  1244566778887764  4543333 3210  


Q ss_pred             C--CC----------HHHHHHHHHHHHhCCCC--EEEEccCcCcC-CHHHHHHHHHHHHhh----CCCC----eEEE---
Q 015894          244 M--VP----------PSKVAYVSKQLYDMGCS--EISLGDTIGVG-TPGTVIPMLEAVLDA----VPVD----KLAV---  297 (398)
Q Consensus       244 r--~~----------~~~l~~~a~~l~~~Gad--~I~L~DT~G~~-~P~~v~~lv~~l~~~----~p~~----~l~~---  297 (398)
                      +  |.          .+++.+.++.+.++|++  .|.|==-+|.. +.++-.++++.+.+-    +|.+    +..|   
T Consensus       179 ~~~y~~~~~dv~~ev~~~l~~~i~~a~~aGI~~~~IilDPG~GF~Kt~~~nl~ll~~l~~l~~lg~PvL~G~SrKsfig~  258 (318)
T 2vp8_A          179 RVSYGTTTRGVVDAVISQVTAAAERAVAAGVAREKVLIDPAHDFGKNTFHGLLLLRHVADLVMTGWPVLMALSNKDVVGE  258 (318)
T ss_dssp             ---CCSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEETTTTCCTTSHHHHHHHHTHHHHHTTSSCBEECCC-------
T ss_pred             ccccccccccHHHHHHHHHHHHHHHHHHcCCChhhEEEcCCCCcccCHHHHHHHHHHHHHHHhCCCCEEEEeCcchhhhh
Confidence            1  10          15666677888899986  45442222322 345556666665532    2311    0111   


Q ss_pred             ----EeCCccchHHHHHHHHHHhCCCEEee
Q 015894          298 ----HFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       298 ----H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                          -..+-..-.++.+..|+..|+++|.+
T Consensus       259 ~~g~~~~~r~~~t~a~~~~a~~~Ga~IvRv  288 (318)
T 2vp8_A          259 TLGVDLTERLEGTLAATALAAAAGARMFRV  288 (318)
T ss_dssp             --------CHHHHHHHHHHHHHTTCCEEEE
T ss_pred             hcCCChHHhHHHHHHHHHHHHHCCCeEEEc
Confidence                11222333344556667777777754

>2h9a_B CO dehydrogenase/acetyl-COA synthase, iron- sulfur protein; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_B*

Probab=96.39  E-value=0.059  Score=52.49  Aligned_cols=142  Identities=15%  Similarity=0.116  Sum_probs=90.8

Q ss_pred             ccEEEeCCCc---cc--CCCCCCCCCH-HHHHHHHHHHHhcCCCEEEEecC-CCCCcccCCCCHHHHHHHHHhc---cCC
Q 015894           97 FVKIVEVGPR---DG--LQNEKNIVPA-VVKVELIKLLVSSGLAVVEATSF-VSPKWVPQLADAKDVMAAIQNV---EGA  166 (398)
Q Consensus        97 ~I~i~D~TLR---DG--~Q~~~~~~~~-~~k~~ia~~L~~aGv~~IEvG~~-~~~~~~p~~~D~~~v~~~i~~~---~~~  166 (398)
                      -+-|+|+|.=   ||  .+.    .+. +..++.++.+.+.|.+.|++|.- ..|...+  .+.++..+.++.+   .++
T Consensus        50 ~m~I~n~tpdsf~d~i~~~~----~~~~~~~~~~A~~~v~~GAdiIDIg~~StrP~~~~--vs~eee~~vV~~v~~~~~v  123 (310)
T 2h9a_B           50 ALEVFDTPPTDWPDILVEPF----KDVINDPVAWAKKCVEYGADIVALRLVSAHPDGQN--RSGAELAEVCKAVADAIDV  123 (310)
T ss_dssp             EEEEESSCCSSCCHHHHGGG----TTTTTCHHHHHHHHHHTTCSEEEEECGGGCTTTTC--CCHHHHHHHHHHHHHHCSS
T ss_pred             EEEEeeCCCcccchhhhhhh----ccHHHHHHHHHHHHHHcCCcEEEEeCccCCCCCCC--CCHHHHHHHHHHHHHhCCc
Confidence            3568898874   66  333    222 56778888899999999999974 3343222  3455556555533   356


Q ss_pred             cEEE-Ee----CCHhhHHHHHHcCCC---EEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeec
Q 015894          167 RFPV-LT----PNLKGFEAAVAAGAK---EVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVG  238 (398)
Q Consensus       167 ~l~~-l~----~n~~~ie~a~~~Gv~---~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg  238 (398)
                      .++. =+    .+.+-+++++++|.+   .|.   ++|.               .+..++...|+++|..+.  ++.   
T Consensus       124 plsI~DT~~~~~~~~V~eaal~aga~~k~iIN---dvs~---------------~~~~~~~~~aa~~g~~vv--~m~---  180 (310)
T 2h9a_B          124 PLMIIGCGVEEKDAEIFPVIGEALSGRNCLLS---SATK---------------DNYKPIVATCMVHGHSVV--ASA---  180 (310)
T ss_dssp             CEEEECCSCHHHHHHHHHHHHHHTTTSCCEEE---EECT---------------TTHHHHHHHHHHHTCEEE--EEC---
T ss_pred             eEEEECCCCCCCCHHHHHHHHHhCCCCCCEEE---ECCC---------------CccHHHHHHHHHhCCCEE--EEC---
Confidence            6666 34    334567899999987   443   2221               013455677788898765  231   


Q ss_pred             CCCCCCCCHHHHHHHHHHHHhCCC--CEEEEccCcC
Q 015894          239 CPVEGMVPPSKVAYVSKQLYDMGC--SEISLGDTIG  272 (398)
Q Consensus       239 ~~~~~r~~~~~l~~~a~~l~~~Ga--d~I~L~DT~G  272 (398)
                       +    -+.+++.+..+.+.++|+  +.|.|==.+|
T Consensus       181 -~----~dv~~l~~~~~~a~~~Gi~~e~IilDPg~g  211 (310)
T 2h9a_B          181 -P----LDINLSKQLNIMIMEMNLAPNRIIMDPLIG  211 (310)
T ss_dssp             -S----SCHHHHHHHHHHHHTTTCCGGGEEEECCCC
T ss_pred             -h----hHHHHHHHHHHHHHHCCCChhhEEEeCCCc
Confidence             1    157889999999999998  5676655555

>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*

Probab=96.39  E-value=0.056  Score=52.54  Aligned_cols=191  Identities=17%  Similarity=0.158  Sum_probs=125.9

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH---hc-cCCcEEEEe---CCHhhHHHHHHcCCC
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ---NV-EGARFPVLT---PNLKGFEAAVAAGAK  187 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~---~~-~~~~l~~l~---~n~~~ie~a~~~Gv~  187 (398)
                      ....+....++++-.+.+-+.|=-.+...-++.    ..+.+...++   +. .++.+....   .+.+.+..|+++|..
T Consensus        24 v~n~e~~~avi~AAee~~sPvIlq~s~g~~~y~----g~~~~~~~v~~aa~~~~~VPValHLDHg~~~e~~~~ai~~GFt   99 (307)
T 3n9r_A           24 FVNFEMLNAIFEAGNEENSPLFIQASEGAIKYM----GIDMAVGMVKIMCERYPHIPVALHLDHGTTFESCEKAVKAGFT   99 (307)
T ss_dssp             CSSHHHHHHHHHHHHHHTCCEEEEEEHHHHHHH----CHHHHHHHHHHHHHHSTTSCEEEEEEEECSHHHHHHHHHHTCS
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEEcChhhhhhC----CHHHHHHHHHHHHHhcCCCcEEEECCCCCCHHHHHHHHHhCCC
Confidence            467888888999999999997765543211111    1222222332   21 345544433   467889999999998


Q ss_pred             EEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC--------CCCCHHHHHHHHHHHHh
Q 015894          188 EVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE--------GMVPPSKVAYVSKQLYD  259 (398)
Q Consensus       188 ~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~--------~r~~~~~l~~~a~~l~~  259 (398)
                      .|.+=.|  .        .+.+|+++.-++++++|++.|+.|++.|-..-|.++.        ..++|+...++++   +
T Consensus       100 SVMiDgS--~--------~p~eeNi~~Tk~vv~~ah~~gvsVEaELG~igG~Ed~~~~~~~~~~yT~Peea~~Fv~---~  166 (307)
T 3n9r_A          100 SVMIDAS--H--------HAFEENLELTSKVVKMAHNAGVSVEAELGRLMGIEDNISVDEKDAVLVNPKEAEQFVK---E  166 (307)
T ss_dssp             EEEECCT--T--------SCHHHHHHHHHHHHHHHHHTTCEEEEEESCCCCC----------CCSCCHHHHHHHHH---H
T ss_pred             cEEEECC--C--------CCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeccccCCcccccccccCCCHHHHHHHHH---H
Confidence            8877322  1        2578999999999999999999999888765454432        2478998888765   4


Q ss_pred             CCCCEEEEc--cCcCcC----CHHHHHHHHHHHHhhCCCCeEEEEe-------------------CCccchHHHHHHHHH
Q 015894          260 MGCSEISLG--DTIGVG----TPGTVIPMLEAVLDAVPVDKLAVHF-------------------HDTYGQALSNILASL  314 (398)
Q Consensus       260 ~Gad~I~L~--DT~G~~----~P~~v~~lv~~l~~~~p~~~l~~H~-------------------Hnd~GlA~ANalaAl  314 (398)
                      .|+|.+.++  -.=|.-    .|.==.++++.+++ .+++||.+|+                   +++.|........|+
T Consensus       167 TgvD~LAvaiGt~HG~Yk~~~~p~Ld~~~L~~I~~-~~~~PLVlHGgS~vp~~~~~~~~~~gg~~~~~~G~p~e~i~~ai  245 (307)
T 3n9r_A          167 SQVDYLAPAIGTSHGAFKFKGEPKLDFERLQEVKR-LTNIPLVLHGASAIPDNVRKSYLDAGGDLKGSKGVPFEFLQESV  245 (307)
T ss_dssp             HCCSEEEECSSCCSSSBCCSSSCCCCHHHHHHHHH-HHCSCEEESSCCCCCHHHHHHHHHTTCCCTTCBCCCHHHHHHHH
T ss_pred             HCCCEEEEecCCcccccCCCCCCccCHHHHHHHHh-cCCCCeEEeCCCCcchHHHHHHHHhcCccCCCCCCCHHHHHHHH
Confidence            699975443  333332    23212233444443 4457899997                   447799999999999


Q ss_pred             HhCCCEEee
Q 015894          315 QMGISTVDS  323 (398)
Q Consensus       315 ~aGa~~VD~  323 (398)
                      +.|+.-|+.
T Consensus       246 ~~GV~KiNi  254 (307)
T 3n9r_A          246 KGGINKVNT  254 (307)
T ss_dssp             HTTEEEEEE
T ss_pred             HcCceEEEe
Confidence            999886654

>3o1n_A 3-dehydroquinate dehydratase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, lyase; 1.03A {Salmonella enterica subsp} PDB: 3s42_A 3l2i_A* 3lb0_A 4guf_A 4gug_A* 4guh_A* 3nnt_A* 4guj_A* 3m7w_A 3oex_A 4gfs_A* 4gui_A* 1gqn_A 1l9w_A* 1qfe_A*

Probab=96.38  E-value=0.72  Score=43.94  Aligned_cols=221  Identities=12%  Similarity=0.057  Sum_probs=137.6

Q ss_pred             ccEEEeCCCcccCCCCCC---CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHH---HHhc-cCCcEE
Q 015894           97 FVKIVEVGPRDGLQNEKN---IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAA---IQNV-EGARFP  169 (398)
Q Consensus        97 ~I~i~D~TLRDG~Q~~~~---~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~---i~~~-~~~~l~  169 (398)
                      .|+|-++++-+|.-.--.   .-+.++.+..++.+...|.|.||+-...-..    ..+.+++.+.   +|+. .+..+.
T Consensus        27 ~v~v~~~~~g~g~p~i~v~l~~~~~~e~~~~~~~~~~~gaD~VElRvD~l~~----~~~~~~v~~~l~~lr~~~~~~PiI  102 (276)
T 3o1n_A           27 TVTVRDLVVGEGAPKIIVSLMGKTITDVKSEALAYREADFDILEWRVDHFAN----VTTAESVLEAAGAIREIITDKPLL  102 (276)
T ss_dssp             CEEETTEEETSSSCEEEEEECCSSHHHHHHHHHHHTTSCCSEEEEEGGGCTT----TTCHHHHHHHHHHHHHHCCSSCEE
T ss_pred             EEEECCEEeCCCCcEEEEEeCCCCHHHHHHHHHHHhhCCCCEEEEEeccccc----cCcHHHHHHHHHHHHHhcCCCCEE
Confidence            477777777776433221   2245566667777778999999996532211    1233444444   4432 345544


Q ss_pred             EEeCCH-h-------------hHHHHHHcC-CCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEe
Q 015894          170 VLTPNL-K-------------GFEAAVAAG-AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLS  234 (398)
Q Consensus       170 ~l~~n~-~-------------~ie~a~~~G-v~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~  234 (398)
                      .-+|.. +             =++.+++.| ++.|.|-....+               +.+.++++.|++.|.++-+..=
T Consensus       103 ~T~Rt~~eGG~~~~~~~~~~~ll~~~l~~g~~dyIDvEl~~~~---------------~~~~~l~~~a~~~~~kvI~S~H  167 (276)
T 3o1n_A          103 FTFRSAKEGGEQALTTGQYIDLNRAAVDSGLVDMIDLELFTGD---------------DEVKATVGYAHQHNVAVIMSNH  167 (276)
T ss_dssp             EECCBGGGTCSBCCCHHHHHHHHHHHHHHTCCSEEEEEGGGCH---------------HHHHHHHHHHHHTTCEEEEEEE
T ss_pred             EEEEEhhhCCCCCCCHHHHHHHHHHHHhcCCCCEEEEECcCCH---------------HHHHHHHHHHHhCCCEEEEEee
Confidence            444421 1             145677889 899999665332               2345667888888888753322


Q ss_pred             eeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHh---hCCCCeEEEEeCCccchHHHHHH
Q 015894          235 CVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLD---AVPVDKLAVHFHDTYGQALSNIL  311 (398)
Q Consensus       235 ~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~---~~p~~~l~~H~Hnd~GlA~ANal  311 (398)
                      . |    ....+.+.+....+++.++|||.+-|+=+.  -++.++.+++....+   .++..|+-.-.  .-.++.-.-+
T Consensus       168 d-f----~~tP~~~el~~~~~~~~~~GaDIvKia~~a--~s~~Dvl~Ll~~~~~~~~~~~~~PlIa~~--MG~~G~~SRi  238 (276)
T 3o1n_A          168 D-F----HKTPAAEEIVQRLRKMQELGADIPKIAVMP--QTKADVLTLLTATVEMQERYADRPIITMS--MSKTGVISRL  238 (276)
T ss_dssp             E-S----SCCCCHHHHHHHHHHHHHTTCSEEEEEECC--SSHHHHHHHHHHHHHHHHHTCCSCCEEEE--CSGGGTHHHH
T ss_pred             c-C----CCCcCHHHHHHHHHHHHHcCCCEEEEEecC--CChHHHHHHHHHHHHHHhcCCCCCEEEEE--CCCchhhHHH
Confidence            1 2    122345788899999999999999888553  467788887776543   24544554432  3334445556


Q ss_pred             HHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q 015894          312 ASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNG  352 (398)
Q Consensus       312 aAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~  352 (398)
                      .+-..|-...-+++   |+ |-   ..|+.+++++-..|+.
T Consensus       239 ~~~~~GS~vTf~~l---~~-~s---APGQl~~~~l~~~l~~  272 (276)
T 3o1n_A          239 AGEVFGSAATFGAV---KK-AS---APGAISVADLRTVLTI  272 (276)
T ss_dssp             CHHHHTCCEEECBS---SC-CS---STTCCBHHHHHHHHHH
T ss_pred             HHHHhCCceEecCC---CC-CC---CCCCCCHHHHHHHHHH
Confidence            66677988888887   33 33   4669999999887764

>3k13_A 5-methyltetrahydrofolate-homocysteine methyltrans; 5-methyltetrahydrofolate,methyltransferase, TIM barrel, STRU genomics, PSI-2; HET: MSE THH GOL; 2.00A {Bacteroides thetaiotaomicron}

Probab=96.37  E-value=0.41  Score=46.27  Aligned_cols=235  Identities=12%  Similarity=0.131  Sum_probs=128.1

Q ss_pred             EeCC----CcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCH-HHHHHHHHhc------cCCcEE
Q 015894          101 VEVG----PRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADA-KDVMAAIQNV------EGARFP  169 (398)
Q Consensus       101 ~D~T----LRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~-~~v~~~i~~~------~~~~l~  169 (398)
                      +.+|    ++||.+.    .+.+..++.++.+.+.|.+.|++|....+      -|. +++.+.++.+      .++.++
T Consensus        19 iNvTg~~sf~~~~~~----~~~~~a~~~A~~~v~~GAdiIDIg~g~~~------v~~~eem~rvv~~i~~~~~~~~vpis   88 (300)
T 3k13_A           19 CNVAGSRKFLRLVNE----KKYDEALSIARQQVEDGALVIDVNMDDGL------LDARTEMTTFLNLIMSEPEIARVPVM   88 (300)
T ss_dssp             EETTTCHHHHHHHHT----TCHHHHHHHHHHHHHTTCSEEEEECCCTT------SCHHHHHHHHHHHHHTCHHHHTSCEE
T ss_pred             ccCCCCHHHHHHHhc----CCHHHHHHHHHHHHHCCCCEEEECCCCCC------CCHHHHHHHHHHHHHHhhhcCCCeEE
Confidence            4566    7777775    46789999999999999999999974322      233 3444444322      355555


Q ss_pred             EEeCCHhhHHHHHH--cCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeee--ecCCCCCCC
Q 015894          170 VLTPNLKGFEAAVA--AGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCV--VGCPVEGMV  245 (398)
Q Consensus       170 ~l~~n~~~ie~a~~--~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~--fg~~~~~r~  245 (398)
                      .=+.+.+-++++++  .|.+.|.=. +..          ..+   +++.++...++++|..+.  ++..  -|.|.    
T Consensus        89 IDT~~~~V~eaaL~~~~Ga~iINdI-s~~----------~~d---~~~~~~~~l~a~~ga~vV--~mh~d~~G~p~----  148 (300)
T 3k13_A           89 IDSSKWEVIEAGLKCLQGKSIVNSI-SLK----------EGE---EVFLEHARIIKQYGAATV--VMAFDEKGQAD----  148 (300)
T ss_dssp             EECSCHHHHHHHHHHCSSCCEEEEE-CST----------TCH---HHHHHHHHHHHHHTCEEE--EESEETTEECC----
T ss_pred             EeCCCHHHHHHHHHhcCCCCEEEeC-Ccc----------cCC---hhHHHHHHHHHHhCCeEE--EEeeCCCCCCC----
Confidence            55677788899998  798866432 111          011   233456777888898764  3332  12222    


Q ss_pred             CHHH----HHHHHHHH-HhCCC--CEEEEccC---cCcCCHH------HHHHHHHHHHhhCCCCeEEEEeCC-ccchH--
Q 015894          246 PPSK----VAYVSKQL-YDMGC--SEISLGDT---IGVGTPG------TVIPMLEAVLDAVPVDKLAVHFHD-TYGQA--  306 (398)
Q Consensus       246 ~~~~----l~~~a~~l-~~~Ga--d~I~L~DT---~G~~~P~------~v~~lv~~l~~~~p~~~l~~H~Hn-d~GlA--  306 (398)
                      +.+.    ..++.+.+ .++|+  +.|.|==-   +|.....      ++-+-++.+++.+|+.|+-+=..| .+|+-  
T Consensus       149 t~~~~~~i~~r~~~~~~~~~Gi~~~~IilDPgig~~gk~~~~~~~~~~~~l~~l~~lk~~lPg~pvl~G~SnkSfglp~~  228 (300)
T 3k13_A          149 TAARKIEVCERAYRLLVDKVGFNPHDIIFDPNVLAVATGIEEHNNYAVDFIEATGWIRKNLPGAHVSGGVSNLSFSFRGN  228 (300)
T ss_dssp             SHHHHHHHHHHHHHHHHHHTCCCGGGEEEECCCCCCSSSCGGGTTHHHHHHHHHHHHHHHSTTCEECCBGGGGGGGGTTC
T ss_pred             CHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCCCccCCChHHhhHHHHHHHHHHHHHHHhCCCCCEEEEECcccccCCCC
Confidence            2333    33344443 67898  34554222   2332222      244445555667887666654444 24542  


Q ss_pred             --------HHHHHHHHHhCCC--EEeeccccCCCCCCCCCCCCCccHHHHHHHHHh-CCCCCccChHHHHHHHHHHHHHh
Q 015894          307 --------LSNILASLQMGIS--TVDSSVSGLGGCPYAKGASGNVATEDVVYMLNG-LGVRTNVDIRKLMIAGDFICKHL  375 (398)
Q Consensus       307 --------~ANalaAl~aGa~--~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~-~Gi~t~iDl~~L~~~~~~v~~~~  375 (398)
                              -+-...|+++|.+  +||.+-..+=.         ..+-|+.-..... ++.+. =..+.|.+.++.++...
T Consensus       229 ~~~R~~~n~~fl~~ai~~Gld~~Ivn~~~~~~~~---------~i~~~~~~~~~~~i~~~~~-~~~~~~~~~~~~~~~~~  298 (300)
T 3k13_A          229 NYIREAMHAVFLYHAIQQGMDMGIVNPGTSVLYS---------DIPADTLEKIEDVVLNRRP-DAAERLIELAEALKETM  298 (300)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCCEEEECCC-CCCGG---------GSCHHHHHHHHHHHTTCST-THHHHHHHHHHHHC---
T ss_pred             cchhHHHHHHHHHHHHHcCCCEEecCcchhhHHh---------hcCHHHHHHHHHHHhCCCc-chHHHHHHHHHHHhhcc
Confidence                    2234567899988  55655443322         3343432222221 33321 23578888777765543

>3tr9_A Dihydropteroate synthase; biosynthesis of cofactors, prosthetic groups, and carriers, transferase; HET: PT1; 1.90A {Coxiella burnetii}

Probab=96.34  E-value=0.42  Score=46.51  Aligned_cols=204  Identities=13%  Similarity=0.117  Sum_probs=117.3

Q ss_pred             CCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCC-CCCcc----cCCCCHHHHH---HHHHhc---
Q 015894           95 PGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFV-SPKWV----PQLADAKDVM---AAIQNV---  163 (398)
Q Consensus        95 p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~-~~~~~----p~~~D~~~v~---~~i~~~---  163 (398)
                      |.=+-|+-+|. |-..-  ...+.+..++.++.+.+.|.+.|++|.-. .|...    | ....+|+.   ..++.+   
T Consensus        28 ~~vMGIlNvTp-DSFsd--~~~~~~~al~~A~~~v~~GAdIIDIGgeSTrPga~~~~~~-V~~~eE~~Rv~pvI~~l~~~  103 (314)
T 3tr9_A           28 PAVMGIINVSP-NSFYH--PHLDLNSALRTAEKMVDEGADILDIGGEATNPFVDIKTDS-PSTQIELDRLLPVIDAIKKR  103 (314)
T ss_dssp             CEEEEEEECST-TCSBC--BCCSHHHHHHHHHHHHHTTCSEEEEECCCSCTTC-----C-HHHHHHHHHHHHHHHHHHHH
T ss_pred             cEEEEEEeCCC-Cchhh--ccCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCcccccCC-CCHHHHHHHHHHHHHHHHhh
Confidence            33355777776 33332  35688999999999999999999999643 33211    1 11123322   222222   


Q ss_pred             cCCcEEEEeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCC
Q 015894          164 EGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEG  243 (398)
Q Consensus       164 ~~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~  243 (398)
                      .++.++.=+.+.+-+++|+++|++.|.=.....                  ..++.+.+++.|..+.  ++..-|.|..-
T Consensus       104 ~~vpISIDT~~~~Va~aAl~aGa~iINDVsg~~------------------~~~m~~v~a~~g~~vV--lMh~~G~P~tm  163 (314)
T 3tr9_A          104 FPQLISVDTSRPRVMREAVNTGADMINDQRALQ------------------LDDALTTVSALKTPVC--LMHFPSETRKP  163 (314)
T ss_dssp             CCSEEEEECSCHHHHHHHHHHTCCEEEETTTTC------------------STTHHHHHHHHTCCEE--EECCCCTTCCT
T ss_pred             CCCeEEEeCCCHHHHHHHHHcCCCEEEECCCCC------------------chHHHHHHHHhCCeEE--EECCCCCCccc
Confidence            355555556778888999999998775322111                  1134566677887765  55444433221


Q ss_pred             CCC---------HHHHHHHHHHHHhCCCC--EEEEccC-cC---c-CCHHHHHHHHHHHHhh-CCCCeEEE-E-------
Q 015894          244 MVP---------PSKVAYVSKQLYDMGCS--EISLGDT-IG---V-GTPGTVIPMLEAVLDA-VPVDKLAV-H-------  298 (398)
Q Consensus       244 r~~---------~~~l~~~a~~l~~~Gad--~I~L~DT-~G---~-~~P~~v~~lv~~l~~~-~p~~~l~~-H-------  298 (398)
                      ...         .+++.+.++.+.++|++  .|.| |- +|   . -++.+-.++++.+..- ..+.|+-+ .       
T Consensus       164 q~~~~ydvv~ev~~~l~~~i~~a~~~GI~~~~Iil-DPG~G~~~F~Kt~~~n~~lL~~l~~l~~lg~PvL~G~SRKsfig  242 (314)
T 3tr9_A          164 GSTTHFYFLQSVKKELQESIQRCKKAGISEDRIII-DPGFGQGNYGKNVSENFYLLNKLPEFVAMGLPVLSGWSRKSMIG  242 (314)
T ss_dssp             TSSCHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEE-ECCCCSGGGCCCHHHHHHHHHTTHHHHTTSSCBEECCTTCHHHH
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHcCCCHhHEEE-eCCCCchhhcCCHHHHHHHHHHHHHHhcCCCCEEEEechhhhhh
Confidence            111         35666777888899986  4554 43 44   2 2456666666665432 12223322 1       


Q ss_pred             ------eCCccchHHHHHHHHHHhCCCEEee
Q 015894          299 ------FHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       299 ------~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                            ..+..+-.+|.+..|+..||++|-+
T Consensus       243 ~~~~~~~~~R~~~t~a~~~~a~~~Ga~IvRv  273 (314)
T 3tr9_A          243 DVLNQPPENRLFGSIAADVLAVYHGASIIRT  273 (314)
T ss_dssp             HHHTCCGGGCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             hhcCCChHHhHHHHHHHHHHHHHcCCcEEEe
Confidence                  2233444456677788899998754

>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1

Probab=96.32  E-value=0.094  Score=48.57  Aligned_cols=153  Identities=22%  Similarity=0.240  Sum_probs=99.1

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHH-HhccCCcEEEE-eCCHhhHHHHHHcCCCEEEEec
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAI-QNVEGARFPVL-TPNLKGFEAAVAAGAKEVAIFA  193 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i-~~~~~~~l~~l-~~n~~~ie~a~~~Gv~~v~i~~  193 (398)
                      .+.++-+++++.|.+.|++.||++.-. +       +..+.++.+ ++.++..+.+= +-..++++.|+++|+|.|+.- 
T Consensus        26 ~~~~~~~~~~~al~~gGv~~iel~~k~-~-------~~~~~i~~l~~~~~~l~vgaGtvl~~d~~~~A~~aGAd~v~~p-   96 (224)
T 1vhc_A           26 DNADDILPLADTLAKNGLSVAEITFRS-E-------AAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVTP-   96 (224)
T ss_dssp             SSGGGHHHHHHHHHHTTCCEEEEETTS-T-------THHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEECS-
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEeccC-c-------hHHHHHHHHHHhCcCcEEeeCcEeeHHHHHHHHHCCCCEEEEC-
Confidence            345566899999999999999999532 1       234455544 35665544321 225688999999999999542 


Q ss_pred             cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCc
Q 015894          194 SASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGV  273 (398)
Q Consensus       194 ~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~  273 (398)
                       -.+                  .++++.++++|..+..      |     -.+++++    .++.++|+|.|.+      
T Consensus        97 -~~d------------------~~v~~~ar~~g~~~i~------G-----v~t~~e~----~~A~~~Gad~vk~------  136 (224)
T 1vhc_A           97 -GLN------------------PKIVKLCQDLNFPITP------G-----VNNPMAI----EIALEMGISAVKF------  136 (224)
T ss_dssp             -SCC------------------HHHHHHHHHTTCCEEC------E-----ECSHHHH----HHHHHTTCCEEEE------
T ss_pred             -CCC------------------HHHHHHHHHhCCCEEe------c-----cCCHHHH----HHHHHCCCCEEEE------
Confidence             111                  3567888899987642      1     1245553    3466899999888      


Q ss_pred             CCHHH-H--HHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHh-CCCEEe
Q 015894          274 GTPGT-V--IPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQM-GISTVD  322 (398)
Q Consensus       274 ~~P~~-v--~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~a-Ga~~VD  322 (398)
                       .|.. +  .++++.++..+|.+|+-.    .=|.-..|+-.-+++ |+..|-
T Consensus       137 -Fpa~~~gG~~~lk~l~~~~~~ipvva----iGGI~~~N~~~~l~agga~~v~  184 (224)
T 1vhc_A          137 -FPAEASGGVKMIKALLGPYAQLQIMP----TGGIGLHNIRDYLAIPNIVACG  184 (224)
T ss_dssp             -TTTTTTTHHHHHHHHHTTTTTCEEEE----BSSCCTTTHHHHHTSTTBCCEE
T ss_pred             -eeCccccCHHHHHHHHhhCCCCeEEE----ECCcCHHHHHHHHhcCCCEEEE
Confidence             3311 1  467888888787666643    234445677777887 666443

>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1

Probab=96.27  E-value=0.39  Score=44.56  Aligned_cols=179  Identities=13%  Similarity=0.058  Sum_probs=113.7

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe--C----C----HhhHHHHHHc
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT--P----N----LKGFEAAVAA  184 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~----n----~~~ie~a~~~  184 (398)
                      ..+.++..++++...+.|+..+-+-    |.|+|         ...+.+.++++.+.+  |    +    ...++. ++.
T Consensus        13 ~~t~~~i~~l~~~A~~~~~~aVcv~----p~~v~---------~a~~~l~gv~v~tvigFP~G~~~~~~k~~E~~~-i~~   78 (226)
T 1vcv_A           13 YLTVDEAVAGARKAEELGVAAYCVN----PIYAP---------VVRPLLRKVKLCVVADFPFGALPTASRIALVSR-LAE   78 (226)
T ss_dssp             TCCHHHHHHHHHHHHHHTCSEEEEC----GGGHH---------HHGGGCSSSEEEEEESTTTCCSCHHHHHHHHHH-HTT
T ss_pred             CCCHHHHHHHHHHHHHhCCCEEEEC----HHHHH---------HHHHHhCCCeEEEEeCCCCCCCchHHHHHHHHH-HHC
Confidence            4578899999999999999998873    43332         111223346665554  2    1    135678 999


Q ss_pred             CCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE
Q 015894          185 GAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE  264 (398)
Q Consensus       185 Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~  264 (398)
                      |+++|.+.+.....     ..-..+...+.+..+++.|.+.+++|-  |.  .     ...+++.....++.+.++|+|.
T Consensus        79 GAdEID~Vinig~~-----~~g~~~~v~~ei~~v~~a~~~~~lKvI--lE--t-----~~Lt~eei~~a~~ia~eaGADf  144 (226)
T 1vcv_A           79 VADEIDVVAPIGLV-----KSRRWAEVRRDLISVVGAAGGRVVKVI--TE--E-----PYLRDEERYTLYDIIAEAGAHF  144 (226)
T ss_dssp             TCSEEEEECCHHHH-----HTTCHHHHHHHHHHHHHHTTTSEEEEE--CC--G-----GGCCHHHHHHHHHHHHHHTCSE
T ss_pred             CCCEEEEecchhhh-----cCCCHHHHHHHHHHHHHHHcCCCceEE--Ee--c-----cCCCHHHHHHHHHHHHHcCCCE
Confidence            99999998875432     123567788888888887765444443  22  1     2235788999999999999998


Q ss_pred             EEEc--cC----------cCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHh---CCC----EEeec
Q 015894          265 ISLG--DT----------IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQM---GIS----TVDSS  324 (398)
Q Consensus       265 I~L~--DT----------~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~a---Ga~----~VD~S  324 (398)
                      |--.  =+          .|..+|+++.-+-+.++..-+.  +++..-=-.-. ...+++-+++   |++    +|-+|
T Consensus       145 VKTSTGf~~~~~~~~~~~~~gAt~~dv~lm~~~i~~~g~~--v~vKaaGGirt-~~~al~~i~a~~~Ga~~~~fRiGtS  220 (226)
T 1vcv_A          145 IKSSTGFAEEAYAARQGNPVHSTPERAAAIARYIKEKGYR--LGVKMAGGIRT-REQAKAIVDAIGWGEDPARVRLGTS  220 (226)
T ss_dssp             EECCCSCCCHHHHHHTTCCSSCCHHHHHHHHHHHHHHTCC--CEEEEESSCCS-HHHHHHHHHHHCSCSCTTTEEEEES
T ss_pred             EEeCCCCCccccccccCCCCCCCHHHHHHHHHHHHHhCCC--ceEEEeCCCCC-HHHHHHHHHHHHCCCCcCCceEecC
Confidence            8765  23          4678888987666655543232  33322111111 3445555555   999    88766

>1f6y_A 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; carbon dioxide fixation, cobalamin, methyltatrahydrofolate; 2.20A {Moorella thermoacetica} SCOP: c.1.21.2 PDB: 2e7f_A* 4djd_A* 4dje_A* 4djf_A* 2ogy_A*

Probab=96.25  E-value=0.15  Score=48.25  Aligned_cols=170  Identities=11%  Similarity=0.074  Sum_probs=100.1

Q ss_pred             CcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc---cCCcEEEEeCCHhhHHHH
Q 015894          105 PRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV---EGARFPVLTPNLKGFEAA  181 (398)
Q Consensus       105 LRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~~n~~~ie~a  181 (398)
                      +.||.+.    .+.+..++.++.+.+.|.+.|++|....+     ....+++.+.++.+   .++.++.=+.+.+-+++|
T Consensus        15 Fsdgg~~----~~~~~a~~~a~~~v~~GAdiIDIg~g~~~-----v~~~ee~~rvv~~i~~~~~~pisIDT~~~~v~~aA   85 (262)
T 1f6y_A           15 IKRAIQE----RDPAPVQEWARRQEEGGARALDLNVGPAV-----QDKVSAMEWLVEVTQEVSNLTLCLDSTNIKAIEAG   85 (262)
T ss_dssp             HHHHHHH----TCHHHHHHHHHHHHHHTCSEEEEBCC---------CHHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHH
T ss_pred             HHHhhhc----CCHHHHHHHHHHHHHCCCcEEEECCCCCC-----CChHHHHHHHHHHHHHhCCCeEEEeCCCHHHHHHH
Confidence            5667654    57888899999999999999999974322     12344555555533   355555556777888999


Q ss_pred             HHc--CCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeee--ecCCCCCCCCHHHHHHHHHHH
Q 015894          182 VAA--GAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCV--VGCPVEGMVPPSKVAYVSKQL  257 (398)
Q Consensus       182 ~~~--Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~--fg~~~~~r~~~~~l~~~a~~l  257 (398)
                      +++  |++.|.=....             +   +.+.++...++++|..+.  ++..  -|.|....-.++++.+.++.+
T Consensus        86 l~a~~Ga~iINdvs~~-------------~---d~~~~~~~~~a~~~~~vv--lmh~~~~G~p~t~~~~~~~~~~~~~~a  147 (262)
T 1f6y_A           86 LKKCKNRAMINSTNAE-------------R---EKVEKLFPLAVEHGAALI--GLTMNKTGIPKDSDTRLAFAMELVAAA  147 (262)
T ss_dssp             HHHCSSCEEEEEECSC-------------H---HHHHHHHHHHHHTTCEEE--EESCCSSCSCSSHHHHHHHHHHHHHHH
T ss_pred             HhhCCCCCEEEECCCC-------------c---ccHHHHHHHHHHhCCcEE--EEcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            998  98777522110             1   334456777888998654  4432  122211111135666777788


Q ss_pred             HhCCCC--EEEEccCcC---cCC--HHHHHHHHHHHHhhC-CCCeEEEEeCC
Q 015894          258 YDMGCS--EISLGDTIG---VGT--PGTVIPMLEAVLDAV-PVDKLAVHFHD  301 (398)
Q Consensus       258 ~~~Gad--~I~L~DT~G---~~~--P~~v~~lv~~l~~~~-p~~~l~~H~Hn  301 (398)
                      .++|++  .|.|==.+|   ...  ..++-+.+..+++.+ |+.|+-+=.+|
T Consensus       148 ~~~Gi~~~~IilDPg~g~~g~~~~~~~~~l~~l~~l~~~~~pg~pvl~G~Sr  199 (262)
T 1f6y_A          148 DEFGLPMEDLYIDPLILPANVAQDHAPEVLKTLQQIKMLADPAPKTVLGLSN  199 (262)
T ss_dssp             HHHTCCGGGEEEECCCCCTTTCTTHHHHHHHHHHHHHTCCSSCCEEEEEGGG
T ss_pred             HHCCCCcccEEEeCCCCcCCCChHHHHHHHHHHHHHHHHhCCCCCEEEeecC
Confidence            889985  454432333   211  234444555666556 66676664444

>3kws_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.68A {Parabacteroides distasonis atcc 8503}

Probab=96.24  E-value=0.64  Score=43.12  Aligned_cols=226  Identities=10%  Similarity=-0.016  Sum_probs=121.2

Q ss_pred             CCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC
Q 015894           94 VPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP  173 (398)
Q Consensus        94 ~p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~  173 (398)
                      |+-++-+...++++        .+   -.+.++.+.++|++.||+.....+      .+.+++.+.+++ .++++.++..
T Consensus        24 m~mklg~~~~~~~~--------~~---~~~~l~~~~~~G~~~vEl~~~~~~------~~~~~~~~~l~~-~gl~v~~~~~   85 (287)
T 3kws_A           24 LELKLSFQEGIAPG--------ES---LNEKLDFMEKLGVVGFEPGGGGLA------GRVNEIKQALNG-RNIKVSAICA   85 (287)
T ss_dssp             CCCEEEEETTSSCC--------SS---HHHHHHHHHHTTCCEEECBSTTCG------GGHHHHHHHHTT-SSCEECEEEC
T ss_pred             ceeeEEEEecccCC--------CC---HHHHHHHHHHcCCCEEEecCCchH------HHHHHHHHHHHH-cCCeEEEEec
Confidence            44456677777765        12   346777888999999999865211      245555555542 3455544321


Q ss_pred             ---------CH-----------hhHHHHHHcCCCEEEEeccCchHHHhh--hcCCCHHHHHHHHHHHHHHHHhCCCcEEE
Q 015894          174 ---------NL-----------KGFEAAVAAGAKEVAIFASASESFSKS--NINCTIEDSLIRYRDVALAARELSIPVRG  231 (398)
Q Consensus       174 ---------n~-----------~~ie~a~~~Gv~~v~i~~~~Sd~~~~~--~~~~s~~~~l~~~~~~v~~ak~~G~~v~~  231 (398)
                               +.           +.++.|.+.|++.|.+...... +...  ......+...+.+.++.++|++.|+.+..
T Consensus        86 ~~~~~l~~~d~~~r~~~~~~~~~~i~~a~~lGa~~v~~~~g~~~-~~~~~p~~~~~~~~~~~~l~~l~~~a~~~Gv~l~l  164 (287)
T 3kws_A           86 GFKGFILSTDPAIRKECMDTMKEIIAAAGELGSTGVIIVPAFNG-QVPALPHTMETRDFLCEQFNEMGTFAAQHGTSVIF  164 (287)
T ss_dssp             CCCSCTTBSSHHHHHHHHHHHHHHHHHHHHTTCSEEEECSCCTT-CCSBCCSSHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred             CCCCcCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEecCcCC-cCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEE
Confidence                     11           1245677889999887533111 0000  00012345667777888999999987652


Q ss_pred             EEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEE-EccCcCcCC-HHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHH
Q 015894          232 YLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEIS-LGDTIGVGT-PGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSN  309 (398)
Q Consensus       232 ~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~-L~DT~G~~~-P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~AN  309 (398)
                      .-...+  +...-.+++.+.++++.+   +.+.+. .-||.=... -.+..+.++.+.   + --.++|++|..+     
T Consensus       165 E~~~~~--~~~~~~~~~~~~~ll~~v---~~~~vg~~~D~~h~~~~g~d~~~~l~~~~---~-~i~~vHlkD~~~-----  230 (287)
T 3kws_A          165 EPLNRK--ECFYLRQVADAASLCRDI---NNPGVRCMGDFWHMTWEETSDMGAFISGG---E-YLQHVHVASRKR-----  230 (287)
T ss_dssp             CCCCTT--TCSSCCCHHHHHHHHHHH---CCTTEEEEEEHHHHHHHCSCHHHHHHHHG---G-GEEEEEECCTTT-----
T ss_pred             EecCcc--cCcccCCHHHHHHHHHHc---CCCCeeEEeehHHHHhcCCCHHHHHHHhh---h-hEEEEEeCCCCC-----
Confidence            111000  011123566666666543   433232 335421110 012223333332   2 247899999751     


Q ss_pred             HHHHHHhCCCEEeeccccCCCCCCCCCCCCC--ccHHHHHHHHHhCCCCCcc--------C-hHHHHHHHHHHHHHh
Q 015894          310 ILASLQMGISTVDSSVSGLGGCPYAKGASGN--VATEDVVYMLNGLGVRTNV--------D-IRKLMIAGDFICKHL  375 (398)
Q Consensus       310 alaAl~aGa~~VD~Sv~GlGecp~a~graGN--a~lE~vv~~L~~~Gi~t~i--------D-l~~L~~~~~~v~~~~  375 (398)
                                          .+  .+ +.|+  .+...++..|++.|++-.+        | .+.+....+++.+.+
T Consensus       231 --------------------r~--~p-G~G~d~id~~~i~~~L~~~gy~g~i~lE~~~~~~~~~~~~~s~~~l~~~~  284 (287)
T 3kws_A          231 --------------------RS--MP-GEDGDADNYINGFKGLKMIGYNNYVSFECGCQGDRNVVVPAAVKLLREQW  284 (287)
T ss_dssp             --------------------SC--ST-TTTGGGCCCHHHHHHHHHTTCCSEEEECCCCSSCHHHHHHHHHHHHHHHH
T ss_pred             --------------------CC--CC-CCCCCCcCHHHHHHHHHHcCCCccEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence                                11  12 3788  9999999999987764211        1 245555556665543

>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*

Probab=96.19  E-value=0.15  Score=46.82  Aligned_cols=152  Identities=21%  Similarity=0.184  Sum_probs=98.5

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHH-HhccCCcEEE-EeCCHhhHHHHHHcCCCEEEEecc
Q 015894          117 PAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAI-QNVEGARFPV-LTPNLKGFEAAVAAGAKEVAIFAS  194 (398)
Q Consensus       117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i-~~~~~~~l~~-l~~n~~~ie~a~~~Gv~~v~i~~~  194 (398)
                      +.++-+++++.|.+.|++.||++.-. +       +..+.++.+ ++.++..+.+ .+-+.++++.|+++|+|.|+.- .
T Consensus        26 ~~~~~~~~~~al~~gGv~~iel~~k~-~-------~~~~~i~~l~~~~~~~~vgagtvi~~d~~~~A~~aGAd~v~~p-~   96 (214)
T 1wbh_A           26 KLEHAVPMAKALVAGGVRVLNVTLRT-E-------CAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISP-G   96 (214)
T ss_dssp             SGGGHHHHHHHHHHTTCCEEEEESCS-T-------THHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEES-S
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEeCCC-h-------hHHHHHHHHHHHCcCCEEeeCEEEEHHHHHHHHHcCCCEEEcC-C
Confidence            45566899999999999999999532 1       234455544 3566544332 1235588999999999999753 1


Q ss_pred             CchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcC
Q 015894          195 ASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVG  274 (398)
Q Consensus       195 ~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~  274 (398)
                       .+                  .++++.++++|..+-..           -.+++++    .++.++|+|.|.+       
T Consensus        97 -~d------------------~~v~~~~~~~g~~~i~G-----------~~t~~e~----~~A~~~Gad~v~~-------  135 (214)
T 1wbh_A           97 -LT------------------EPLLKAATEGTIPLIPG-----------ISTVSEL----MLGMDYGLKEFKF-------  135 (214)
T ss_dssp             -CC------------------HHHHHHHHHSSSCEEEE-----------ESSHHHH----HHHHHTTCCEEEE-------
T ss_pred             -CC------------------HHHHHHHHHhCCCEEEe-----------cCCHHHH----HHHHHCCCCEEEE-------
Confidence             11                  25678888999876421           1245553    4456799999887       


Q ss_pred             CHHH-H--HHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHh-CCCEEe
Q 015894          275 TPGT-V--IPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQM-GISTVD  322 (398)
Q Consensus       275 ~P~~-v--~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~a-Ga~~VD  322 (398)
                      .|.. +  .++++.++..+|.+|+-.=    =|.-..|+-.-+++ |+..|-
T Consensus       136 Fpa~~~gG~~~lk~i~~~~~~ipvvai----GGI~~~n~~~~l~agg~~~v~  183 (214)
T 1wbh_A          136 FPAEANGGVKALQAIAGPFSQVRFCPT----GGISPANYRDYLALKSVLCIG  183 (214)
T ss_dssp             TTTTTTTHHHHHHHHHTTCTTCEEEEB----SSCCTTTHHHHHTSTTBSCEE
T ss_pred             ecCccccCHHHHHHHhhhCCCCeEEEE----CCCCHHHHHHHHhcCCCeEEE
Confidence            2211 1  4678888888877666442    24445577777887 665443

>1k77_A EC1530, hypothetical protein YGBM; TIM barrel, structural genomics, PSI, structure initiative; 1.63A {Escherichia coli} SCOP: c.1.15.5

Probab=96.19  E-value=0.16  Score=46.38  Aligned_cols=184  Identities=10%  Similarity=0.041  Sum_probs=99.7

Q ss_pred             HHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe-C-------------C-----------Hhh
Q 015894          123 ELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT-P-------------N-----------LKG  177 (398)
Q Consensus       123 ~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~-~-------------n-----------~~~  177 (398)
                      +.++.+.++|++.||+..+..       .+.+++.+.++. .+.++.++. +             +           .+.
T Consensus        19 ~~l~~~~~~G~~~vEl~~~~~-------~~~~~~~~~l~~-~gl~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~   90 (260)
T 1k77_A           19 ERFAAARKAGFDAVEFLFPYN-------YSTLQIQKQLEQ-NHLTLALFNTAPGDINAGEWGLSALPGREHEAHADIDLA   90 (260)
T ss_dssp             GHHHHHHHHTCSEEECSCCTT-------SCHHHHHHHHHH-TTCEEEEEECCCCCGGGTCSCSTTCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCEEEecCCCC-------CCHHHHHHHHHH-cCCceEEEecCCcccccccCCCCCChhHHHHHHHHHHHH
Confidence            345667788999999986321       345666655553 245544332 1             0           112


Q ss_pred             HHHHHHcCCCEEEEeccCchHHHhhhcCCCHH----HHHHHHHHHHHHHHhCCCcEEEEEeeeecC--CCCCCCCHHHHH
Q 015894          178 FEAAVAAGAKEVAIFASASESFSKSNINCTIE----DSLIRYRDVALAARELSIPVRGYLSCVVGC--PVEGMVPPSKVA  251 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~----~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~--~~~~r~~~~~l~  251 (398)
                      ++.|.+.|++.|.+.....+      -+.+.+    ...+.+.++.++|++.|+.+.  +...-..  |...-.+++.+.
T Consensus        91 i~~a~~lG~~~v~~~~g~~~------~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~--~E~~~~~~~~~~~~~~~~~~~  162 (260)
T 1k77_A           91 LEYALALNCEQVHVMAGVVP------AGEDAERYRAVFIDNIRYAADRFAPHGKRIL--VEALSPGVKPHYLFSSQYQAL  162 (260)
T ss_dssp             HHHHHHTTCSEEECCCCBCC------TTSCHHHHHHHHHHHHHHHHHHHGGGTCEEE--ECCCCTTTSTTBSCCSHHHHH
T ss_pred             HHHHHHcCCCEEEECcCCCC------CCCCHHHHHHHHHHHHHHHHHHHHHcCCEEE--EEeCCccCCCcCccCCHHHHH
Confidence            56677899999877543211      112333    445566777788889998764  3211000  111124566666


Q ss_pred             HHHHHHHhCCCCEE-EEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCC
Q 015894          252 YVSKQLYDMGCSEI-SLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGG  330 (398)
Q Consensus       252 ~~a~~l~~~Gad~I-~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGe  330 (398)
                      ++++.+   +.+.+ ..-|+.=...-.  .+....+++ +.+--.++|+||..|                         .
T Consensus       163 ~l~~~~---~~~~~g~~~D~~h~~~~~--~d~~~~l~~-~~~~i~~vH~~D~~~-------------------------r  211 (260)
T 1k77_A          163 AIVEEV---ARDNVFIQLDTFHAQKVD--GNLTHLIRD-YAGKYAHVQIAGLPD-------------------------R  211 (260)
T ss_dssp             HHHHHH---CCTTEEEEEEHHHHHHHT--CCHHHHHHH-TTTSEEEEEECCTTT-------------------------C
T ss_pred             HHHHHh---CCCCEEEEeeHHHHHhhC--CCHHHHHHH-hhhheeEEEECCCCC-------------------------C
Confidence            665543   43322 233542111000  012233333 333347889998753                         1


Q ss_pred             CCCCCCCCCCccHHHHHHHHHhCCCC
Q 015894          331 CPYAKGASGNVATEDVVYMLNGLGVR  356 (398)
Q Consensus       331 cp~a~graGNa~lE~vv~~L~~~Gi~  356 (398)
                      ++  +| .|..+...++..|++.|++
T Consensus       212 ~~--~G-~G~id~~~~~~~L~~~gy~  234 (260)
T 1k77_A          212 HE--PD-DGEINYPWLFRLFDEVGYQ  234 (260)
T ss_dssp             CC--SS-SSSSCHHHHHHHHHHTTCC
T ss_pred             CC--CC-CCccCHHHHHHHHHHcCCC
Confidence            11  22 6889999999999987775

>2yci_X 5-methyltetrahydrofolate corrinoid/iron sulfur PR methyltransferase; 1.78A {Carboxydothermus hydrogenoformans} PDB: 2ycj_A* 2yck_X*

Probab=96.11  E-value=0.11  Score=49.64  Aligned_cols=173  Identities=9%  Similarity=0.013  Sum_probs=106.1

Q ss_pred             EEeCCC---cccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh---ccCCcEEEEeC
Q 015894          100 IVEVGP---RDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN---VEGARFPVLTP  173 (398)
Q Consensus       100 i~D~TL---RDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~---~~~~~l~~l~~  173 (398)
                      ++++|.   .||.+.    .+.+..++.++.+.+.|.+.|++|.-.+..     .+.+.+...++.   ..++.++.=+.
T Consensus        16 ilN~Tpdsf~dg~~~----~~~~~a~~~a~~~v~~GAdiIDIg~~s~~~-----eE~~rv~~vi~~l~~~~~~pisIDT~   86 (271)
T 2yci_X           16 RINGMFKDIREAILN----KDPRPIQEWARRQAEKGAHYLDVNTGPTAD-----DPVRVMEWLVKTIQEVVDLPCCLDST   86 (271)
T ss_dssp             EEETTSHHHHHHHHT----TCCHHHHHHHHHHHHTTCSEEEEECCSCSS-----CHHHHHHHHHHHHHHHCCCCEEEECS
T ss_pred             ecCCChhhHHHhhhh----CCHHHHHHHHHHHHHCCCCEEEEcCCcCch-----hHHHHHHHHHHHHHHhCCCeEEEeCC
Confidence            566773   355554    456888899999999999999999765321     223444444443   23666766677


Q ss_pred             CHhhHHHHHHc--CCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCC----H
Q 015894          174 NLKGFEAAVAA--GAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVP----P  247 (398)
Q Consensus       174 n~~~ie~a~~~--Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~----~  247 (398)
                      +.+-+++++++  |.+.|.=....              +  +++.++...++++|..+.  ++.. . +.....+    .
T Consensus        87 ~~~v~~aal~a~~Ga~iINdvs~~--------------~--d~~~~~~~~~a~~~~~vv--~m~~-d-~~G~p~t~~~~~  146 (271)
T 2yci_X           87 NPDAIEAGLKVHRGHAMINSTSAD--------------Q--WKMDIFFPMAKKYEAAII--GLTM-N-EKGVPKDANDRS  146 (271)
T ss_dssp             CHHHHHHHHHHCCSCCEEEEECSC--------------H--HHHHHHHHHHHHHTCEEE--EESC-B-TTBCCCSHHHHH
T ss_pred             CHHHHHHHHHhCCCCCEEEECCCC--------------c--cccHHHHHHHHHcCCCEE--EEec-C-CCCCCCCHHHHH
Confidence            88888999998  99887622111              0  334566777888888664  3322 0 0111234    4


Q ss_pred             HHHHHHHHHHHhCCCCE--EEEccCcCc--CCHHHHHHHHHHHH---hhC-CCCeEEEEeCC
Q 015894          248 SKVAYVSKQLYDMGCSE--ISLGDTIGV--GTPGTVIPMLEAVL---DAV-PVDKLAVHFHD  301 (398)
Q Consensus       248 ~~l~~~a~~l~~~Gad~--I~L~DT~G~--~~P~~v~~lv~~l~---~~~-p~~~l~~H~Hn  301 (398)
                      +++.+.++.+.++|++.  |.|==.+|.  -+.++-.++++.++   +.. |+.|+-+=.+|
T Consensus       147 ~~l~~~~~~a~~~Gi~~~~IilDPg~gfigk~~~~~~~~l~~l~~~~~~~~p~~p~l~G~Sn  208 (271)
T 2yci_X          147 QLAMELVANADAHGIPMTELYIDPLILPVNVAQEHAVEVLETIRQIKLMANPAPRTVLGLSN  208 (271)
T ss_dssp             HHHHHHHHHHHHTTCCGGGEEEECCCCCTTTSTHHHHHHHHHHHHHTTSSSSCCEEEEEGGG
T ss_pred             HHHHHHHHHHHHCCCCcccEEEecCCCccccCHHHHHHHHHHHHHHHHhCCCCCCEEEeeCc
Confidence            56666777888899863  655334443  13455556666655   344 56666664444

>1qtw_A Endonuclease IV; DNA repair enzyme, TIM barrel, trinuclear Zn cluster, hydrolase; 1.02A {Escherichia coli} SCOP: c.1.15.1 PDB: 1qum_A* 2nqh_A 2nqj_A* 2nq9_A*

Probab=96.10  E-value=0.64  Score=42.75  Aligned_cols=168  Identities=11%  Similarity=0.111  Sum_probs=90.4

Q ss_pred             HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHH--HHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 015894          178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALA--ARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSK  255 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~--ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~  255 (398)
                      ++.|.+.|++.|.+......      ...+.++.++++.+.++.  +++.|+.+.  +....+.+..--.+++.+.++++
T Consensus        95 i~~A~~lGa~~v~~~~g~~~------~~~~~~~~~~~~~~~l~~l~a~~~gv~l~--lEn~~~~~~~~~~~~~~~~~l~~  166 (285)
T 1qtw_A           95 MQRCEQLGLSLLNFHPGSHL------MQISEEDCLARIAESINIALDKTQGVTAV--IENTAGQGSNLGFKFEHLAAIID  166 (285)
T ss_dssp             HHHHHHTTCCEEEECCCBCT------TTSCHHHHHHHHHHHHHHHHHHCSSCEEE--EECCCCCTTBCCSSHHHHHHHHH
T ss_pred             HHHHHHcCCCEEEECcCCCC------CCCCHHHHHHHHHHHHHHHHhccCCCEEE--EecCCCCCCcccCCHHHHHHHHH
Confidence            45677889999877544211      112556666655554443  344566543  43221111111236777777765


Q ss_pred             HHHhCCCCEE-EEccC-----cC--cCCHHHHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccc
Q 015894          256 QLYDMGCSEI-SLGDT-----IG--VGTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILASLQMGISTVDSSVS  326 (398)
Q Consensus       256 ~l~~~Gad~I-~L~DT-----~G--~~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~  326 (398)
                      .+.  +.+.+ ..-||     .|  ...|..+.+.++.+.+..+ +-..++|+||..+-          .|..       
T Consensus       167 ~v~--~~~~~g~~~D~~H~~~~g~~~~~~~~~~~~~~~~~~~~g~~~i~~vH~~D~~~~----------~~~~-------  227 (285)
T 1qtw_A          167 GVE--DKSRVGVCIDTCHAFAAGYDLRTPAECEKTFADFARTVGFKYLRGMHLNDAKST----------FGSR-------  227 (285)
T ss_dssp             HCS--CGGGEEEEEEHHHHHHHTCCCSSHHHHHHHHHHHHHHTCGGGEEEEEECEESSC----------TTCC-------
T ss_pred             hhc--CccceEEEEEhHhHHHcCCCcCChHHHHHHHHHHHHhcCccceeEEEEecCCCc----------ccCC-------
Confidence            441  32222 22355     22  2345567777888776664 44578999987642          0110       


Q ss_pred             cCCCCCCCCCCCCCccHHHHHHHHHhCCCCCcc-------ChHHHHHHHHHHHHHhC
Q 015894          327 GLGGCPYAKGASGNVATEDVVYMLNGLGVRTNV-------DIRKLMIAGDFICKHLG  376 (398)
Q Consensus       327 GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~i-------Dl~~L~~~~~~v~~~~g  376 (398)
                       -.+ ...+ +.|..+.+.++..|++.|++ ++       +.+.+.+..+++++..+
T Consensus       228 -~~~-h~~~-G~G~id~~~~~~~L~~~gy~-g~~~~lE~~~~~~~~~s~~~lr~~~~  280 (285)
T 1qtw_A          228 -VDR-HHSL-GEGNIGHDAFRWIMQDDRFD-GIPLILETINPDIWAEEIAWLKAQQT  280 (285)
T ss_dssp             -CCC-EECT-TTSSSCSHHHHHHHTCGGGT-TSEEEECCSCGGGHHHHHHHHHHHTT
T ss_pred             -ccc-ccCC-CCCCCCHHHHHHHHhccCcC-CCCEEEecCCCcchHHHHHHHHHHHh
Confidence             000 0111 35788999999999875542 21       34566666677776654

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}

Probab=96.07  E-value=0.0073  Score=57.04  Aligned_cols=166  Identities=16%  Similarity=0.144  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHhcCCCEEEE----ecCCCCCcccCCCCHHHHHHHHHhc-cCCcEEE--EeCCH-hhHHHHHHcCCCEEE
Q 015894          119 VVKVELIKLLVSSGLAVVEA----TSFVSPKWVPQLADAKDVMAAIQNV-EGARFPV--LTPNL-KGFEAAVAAGAKEVA  190 (398)
Q Consensus       119 ~~k~~ia~~L~~aGv~~IEv----G~~~~~~~~p~~~D~~~v~~~i~~~-~~~~l~~--l~~n~-~~ie~a~~~Gv~~v~  190 (398)
                      ..-.+-++.+.++|++.+-+    |.|+     |.+.--..+.+.+|+. |+..+-+  ++.+. +-++.++++|++.|.
T Consensus        40 ~~L~~~i~~l~~~G~d~lHvDVmDg~FV-----pnit~G~~~v~~lr~~~p~~~ldvHLmv~~p~~~i~~~~~aGAd~it  114 (246)
T 3inp_A           40 ARLGDDVKAVLAAGADNIHFDVMDNHYV-----PNLTFGPMVLKALRDYGITAGMDVHLMVKPVDALIESFAKAGATSIV  114 (246)
T ss_dssp             GGHHHHHHHHHHTTCCCEEEEEEBSSSS-----SCBCCCHHHHHHHHHHTCCSCEEEEEECSSCHHHHHHHHHHTCSEEE
T ss_pred             hhHHHHHHHHHHcCCCEEEEEecCCCcC-----cchhcCHHHHHHHHHhCCCCeEEEEEeeCCHHHHHHHHHHcCCCEEE
Confidence            33456678888999996555    5554     3333334567777754 3665555  23343 447888999999999


Q ss_pred             EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE---
Q 015894          191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL---  267 (398)
Q Consensus       191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L---  267 (398)
                      +..-..                +.+.+.++.+|++|.++.+.+.     |.   ++.+.+.++..     ++|.|.+   
T Consensus       115 vH~Ea~----------------~~~~~~i~~ir~~G~k~Gvaln-----p~---Tp~e~l~~~l~-----~vD~VlvMsV  165 (246)
T 3inp_A          115 FHPEAS----------------EHIDRSLQLIKSFGIQAGLALN-----PA---TGIDCLKYVES-----NIDRVLIMSV  165 (246)
T ss_dssp             ECGGGC----------------SCHHHHHHHHHTTTSEEEEEEC-----TT---CCSGGGTTTGG-----GCSEEEEECS
T ss_pred             Eccccc----------------hhHHHHHHHHHHcCCeEEEEec-----CC---CCHHHHHHHHh-----cCCEEEEeee
Confidence            864322                2245667888999998875444     21   23444433332     4777654   


Q ss_pred             -ccCcCcCCHHHHHHHHHHHHhhC----CCCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894          268 -GDTIGVGTPGTVIPMLEAVLDAV----PVDKLAVHFHDTYGQALSNILASLQMGISTVD  322 (398)
Q Consensus       268 -~DT~G~~~P~~v~~lv~~l~~~~----p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD  322 (398)
                       +...|...-....+.++.+|+..    ++.+|++    |-|....|+-.++++||+.+=
T Consensus       166 ~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~I~V----DGGI~~~ti~~~~~aGAD~~V  221 (246)
T 3inp_A          166 NPGFGGQKFIPAMLDKAKEISKWISSTDRDILLEI----DGGVNPYNIAEIAVCGVNAFV  221 (246)
T ss_dssp             CTTC--CCCCTTHHHHHHHHHHHHHHHTSCCEEEE----ESSCCTTTHHHHHTTTCCEEE
T ss_pred             cCCCCCcccchHHHHHHHHHHHHHHhcCCCeeEEE----ECCcCHHHHHHHHHcCCCEEE
Confidence             33344322233444466666543    3345665    556667788899999999753

>2qjg_A Putative aldolase MJ0400; beta-alpha barrel, lyase; HET: F2P; 2.60A {Methanocaldococcus jannaschii} PDB: 2qjh_A 2qji_A

Probab=96.02  E-value=0.43  Score=44.57  Aligned_cols=172  Identities=13%  Similarity=0.121  Sum_probs=104.6

Q ss_pred             HHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh-cc-CCcEEEEe---C-------C---HhhHHHHHH
Q 015894          119 VVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN-VE-GARFPVLT---P-------N---LKGFEAAVA  183 (398)
Q Consensus       119 ~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~-~~-~~~l~~l~---~-------n---~~~ie~a~~  183 (398)
                      ++..++++.+.+.|++.|.+..    .+          ...+.+ .. +..+..-.   .       .   ...++.+++
T Consensus        45 ~~~~~~~~~~~~~g~~~i~~~~----~~----------~~~~~~~~~~~~~~~v~~~~~~~~~~d~~~~~~~~~v~~a~~  110 (273)
T 2qjg_A           45 IDIRKTVNDVAEGGANAVLLHK----GI----------VRHGHRGYGKDVGLIIHLSGGTAISPNPLKKVIVTTVEEAIR  110 (273)
T ss_dssp             SSHHHHHHHHHHHTCSEEEECH----HH----------HHSCCCSSSCCCEEEEECEECCTTSSSTTCCEECSCHHHHHH
T ss_pred             hhHHHHHHHHHhcCCCEEEeCH----HH----------HHHHHHhhcCCCCEEEEEcCCCcCCCCcccchHHHHHHHHHH
Confidence            3445899999999999998632    11          111111 11 12121111   1       1   457889999


Q ss_pred             cCCCEE--EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCC
Q 015894          184 AGAKEV--AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMG  261 (398)
Q Consensus       184 ~Gv~~v--~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~G  261 (398)
                      .|++.|  .+.....          +.++.++.++++++.+++.|+.+.+.+. ..|.......+++.+.++++.+.+.|
T Consensus       111 ~Ga~~v~~~l~~~~~----------~~~~~~~~~~~v~~~~~~~g~~viv~~~-~~G~~l~~~~~~~~~~~~a~~a~~~G  179 (273)
T 2qjg_A          111 MGADAVSIHVNVGSD----------EDWEAYRDLGMIAETCEYWGMPLIAMMY-PRGKHIQNERDPELVAHAARLGAELG  179 (273)
T ss_dssp             TTCSEEEEEEEETST----------THHHHHHHHHHHHHHHHHHTCCEEEEEE-ECSTTCSCTTCHHHHHHHHHHHHHTT
T ss_pred             cCCCEEEEEEecCCC----------CHHHHHHHHHHHHHHHHHcCCCEEEEeC-CCCcccCCCCCHhHHHHHHHHHHHcC
Confidence            999999  5544321          4557788889999999999998865321 22211001145667777778899999


Q ss_pred             CCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCc---cchHHHHHHHHHHhCCCEEee
Q 015894          262 CSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDT---YGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       262 ad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd---~GlA~ANalaAl~aGa~~VD~  323 (398)
                      +|.|.+.-+   ..+    ++++.+++..+ +|+-.|+=-+   .--++.....++++||+.|-+
T Consensus       180 ad~i~~~~~---~~~----~~l~~i~~~~~-ipvva~GGi~~~~~~~~~~~~~~~~~~Ga~gv~v  236 (273)
T 2qjg_A          180 ADIVKTSYT---GDI----DSFRDVVKGCP-APVVVAGGPKTNTDEEFLQMIKDAMEAGAAGVAV  236 (273)
T ss_dssp             CSEEEECCC---SSH----HHHHHHHHHCS-SCEEEECCSCCSSHHHHHHHHHHHHHHTCSEEEC
T ss_pred             CCEEEECCC---CCH----HHHHHHHHhCC-CCEEEEeCCCCCCHHHHHHHHHHHHHcCCcEEEe
Confidence            999888742   233    34455555554 4677776333   333444467777899986654

>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*

Probab=95.96  E-value=0.041  Score=50.25  Aligned_cols=166  Identities=13%  Similarity=0.050  Sum_probs=93.2

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-cCCcEEEEe---CCH-hhHHHHHHcCCCEEE
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-EGARFPVLT---PNL-KGFEAAVAAGAKEVA  190 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~~~~l~~l~---~n~-~~ie~a~~~Gv~~v~  190 (398)
                      .+.++-+++++.+ +.|++.+|+|++..-..      ..++++.+++. ++..+....   ... .-++.+.++|++.+.
T Consensus        16 ~~~~~~~~~~~~~-~~~vd~ie~g~~~~~~~------G~~~i~~lr~~~~~~~i~ld~~l~d~p~~~~~~~~~aGad~i~   88 (218)
T 3jr2_A           16 TNLTDAVAVASNV-ASYVDVIEVGTILAFAE------GMKAVSTLRHNHPNHILVCDMKTTDGGAILSRMAFEAGADWIT   88 (218)
T ss_dssp             SSHHHHHHHHHHH-GGGCSEEEECHHHHHHH------TTHHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHHTCSEEE
T ss_pred             CCHHHHHHHHHHh-cCCceEEEeCcHHHHhc------CHHHHHHHHHhCCCCcEEEEEeecccHHHHHHHHHhcCCCEEE
Confidence            4677888999997 66999999997421100      11455666644 555443321   222 346888999999998


Q ss_pred             EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc--
Q 015894          191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG--  268 (398)
Q Consensus       191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~--  268 (398)
                      +.....+               +.+.++++.++++|..+.+.+   .+ +    .+++...    .+.+.|+|.+.+.  
T Consensus        89 vh~~~~~---------------~~~~~~~~~~~~~g~~~~~d~---l~-~----~T~~~~~----~~~~~g~d~v~~~~~  141 (218)
T 3jr2_A           89 VSAAAHI---------------ATIAACKKVADELNGEIQIEI---YG-N----WTMQDAK----AWVDLGITQAIYHRS  141 (218)
T ss_dssp             EETTSCH---------------HHHHHHHHHHHHHTCEEEEEC---CS-S----CCHHHHH----HHHHTTCCEEEEECC
T ss_pred             EecCCCH---------------HHHHHHHHHHHHhCCccceee---ee-c----CCHHHHH----HHHHcCccceeeeec
Confidence            8654322               224466777888898764211   21 1    2454433    3445699976551  


Q ss_pred             ---cCcCc-CCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894          269 ---DTIGV-GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD  322 (398)
Q Consensus       269 ---DT~G~-~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD  322 (398)
                         ...|. ..|..+ +.++.++.  ++.++.+=+    |.-..|+-.++++||+.|=
T Consensus       142 ~~~~~~g~~~~~~~l-~~i~~~~~--~~~pi~v~G----GI~~~~~~~~~~aGAd~vv  192 (218)
T 3jr2_A          142 RDAELAGIGWTTDDL-DKMRQLSA--LGIELSITG----GIVPEDIYLFEGIKTKTFI  192 (218)
T ss_dssp             HHHHHHTCCSCHHHH-HHHHHHHH--TTCEEEEES----SCCGGGGGGGTTSCEEEEE
T ss_pred             cccccCCCcCCHHHH-HHHHHHhC--CCCCEEEEC----CCCHHHHHHHHHcCCCEEE
Confidence               11132 233333 33444442  334555433    3334455678899988653

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=95.84  E-value=0.34  Score=44.85  Aligned_cols=157  Identities=14%  Similarity=0.082  Sum_probs=98.0

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEE------------EeCCHhhHHHHHH
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPV------------LTPNLKGFEAAVA  183 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~------------l~~n~~~ie~a~~  183 (398)
                      .+.....++++...+.|...|+++.            . +.++.+++..+..+.+            +.+..++++.+.+
T Consensus        33 ~~~~~~~~~A~a~~~~Ga~~i~~~~------------~-~~i~~ir~~v~~Pvig~~k~~~~~~~~~I~~~~~~i~~~~~   99 (229)
T 3q58_A           33 DKPEIVAAMAQAAASAGAVAVRIEG------------I-ENLRTVRPHLSVPIIGIIKRDLTGSPVRITPYLQDVDALAQ   99 (229)
T ss_dssp             CSHHHHHHHHHHHHHTTCSEEEEES------------H-HHHHHHGGGCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHCCCcEEEECC------------H-HHHHHHHHhcCCCEEEEEeecCCCCceEeCccHHHHHHHHH
Confidence            4678889999999999999999964            1 3355666544443322            2245567889999


Q ss_pred             cCCCEEEEeccC--chHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCC
Q 015894          184 AGAKEVAIFASA--SESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMG  261 (398)
Q Consensus       184 ~Gv~~v~i~~~~--Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~G  261 (398)
                      +|+|.|.+-...  ++               +.+.++++.++++|+.+.+.+           .+.++    ++.+.+.|
T Consensus       100 aGad~I~l~~~~~~~p---------------~~l~~~i~~~~~~g~~v~~~v-----------~t~ee----a~~a~~~G  149 (229)
T 3q58_A          100 AGADIIAFDASFRSRP---------------VDIDSLLTRIRLHGLLAMADC-----------STVNE----GISCHQKG  149 (229)
T ss_dssp             HTCSEEEEECCSSCCS---------------SCHHHHHHHHHHTTCEEEEEC-----------SSHHH----HHHHHHTT
T ss_pred             cCCCEEEECccccCCh---------------HHHHHHHHHHHHCCCEEEEec-----------CCHHH----HHHHHhCC
Confidence            999988664332  11               234567788888898775321           23433    56677899


Q ss_pred             CCEEEE--cc-CcC--cCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchH-HHHHHHHHHhCCCEEee
Q 015894          262 CSEISL--GD-TIG--VGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQA-LSNILASLQMGISTVDS  323 (398)
Q Consensus       262 ad~I~L--~D-T~G--~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA-~ANalaAl~aGa~~VD~  323 (398)
                      +|.|.+  -+ |.+  ...| . .++++.+++.  ++|+-.=+    |.. ..++..++++||+.|=+
T Consensus       150 ad~Ig~~~~g~t~~~~~~~~-~-~~li~~l~~~--~ipvIA~G----GI~t~~d~~~~~~~GadgV~V  209 (229)
T 3q58_A          150 IEFIGTTLSGYTGPITPVEP-D-LAMVTQLSHA--GCRVIAEG----RYNTPALAANAIEHGAWAVTV  209 (229)
T ss_dssp             CSEEECTTTTSSSSCCCSSC-C-HHHHHHHHTT--TCCEEEES----SCCSHHHHHHHHHTTCSEEEE
T ss_pred             CCEEEecCccCCCCCcCCCC-C-HHHHHHHHHc--CCCEEEEC----CCCCHHHHHHHHHcCCCEEEE
Confidence            999953  11 111  1122 2 2566666654  34444432    442 56777788889886644

>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1

Probab=95.79  E-value=0.46  Score=43.68  Aligned_cols=172  Identities=15%  Similarity=0.074  Sum_probs=97.3

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe--C---CH-----hhHHHHHHc
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT--P---NL-----KGFEAAVAA  184 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~---n~-----~~ie~a~~~  184 (398)
                      ..+.++..++++...+.|+..+-+    .|.+++      ...+.++   ++++...+  |   +.     ...+.|++.
T Consensus        16 ~~t~~~i~~l~~~a~~~g~~~v~v----~~~~v~------~~~~~l~---~v~v~~v~~~P~g~~~~~~k~~~~~~A~~~   82 (225)
T 1mzh_A           16 HLSEKEIEEFVLKSEELGIYAVCV----NPYHVK------LASSIAK---KVKVCCVIGFPLGLNKTSVKVKEAVEAVRD   82 (225)
T ss_dssp             TCCHHHHHHHHHHHHHTTCSEEEE----CGGGHH------HHHHHCS---SSEEEEEESTTTCCSCHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHHhCCeEEEE----CHHHHH------HHHHHhc---CCceeeEecCCCCccchhhhHHHHHHHHHc
Confidence            468888889999999999998774    333221      1122222   45554433  2   11     235688899


Q ss_pred             CCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE
Q 015894          185 GAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE  264 (398)
Q Consensus       185 Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~  264 (398)
                      |++.|.+.+..+-.  +   ....+..++.+..+.+.+.  ++.+.  +...  .   ...+++...++++.+.++|+|.
T Consensus        83 Gad~Id~viN~g~~--~---~~~~~~~~~~i~~v~~a~~--pv~vK--vi~e--~---~~l~~~~~~~~a~~a~eaGad~  148 (225)
T 1mzh_A           83 GAQELDIVWNLSAF--K---SEKYDFVVEELKEIFRETP--SAVHK--VIVE--T---PYLNEEEIKKAVEICIEAGADF  148 (225)
T ss_dssp             TCSEEEEECCHHHH--H---TTCHHHHHHHHHHHHHTCT--TSEEE--EECC--G---GGCCHHHHHHHHHHHHHHTCSE
T ss_pred             CCCEEEEEecHHHH--h---cCChHHHHHHHHHHHHHhc--CceEE--EEEe--C---CCCCHHHHHHHHHHHHHhCCCE
Confidence            99999987665441  1   1133444444333333222  33332  3211  1   1246778999999999999999


Q ss_pred             EEEccC---cCcCCHHHHHHHHHHHHhhCCCCeEEEEe-CCccchHHHHHHHHHHhCCCEE
Q 015894          265 ISLGDT---IGVGTPGTVIPMLEAVLDAVPVDKLAVHF-HDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       265 I~L~DT---~G~~~P~~v~~lv~~l~~~~p~~~l~~H~-Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                      | -..|   .|..++..++.+.+.+...   +||-.=+ =.+    ...+++.+++||+.|
T Consensus       149 I-~tstg~~~gga~~~~i~~v~~~v~~~---ipVia~GGI~t----~~da~~~l~aGA~~i  201 (225)
T 1mzh_A          149 I-KTSTGFAPRGTTLEEVRLIKSSAKGR---IKVKASGGIRD----LETAISMIEAGADRI  201 (225)
T ss_dssp             E-ECCCSCSSSCCCHHHHHHHHHHHTTS---SEEEEESSCCS----HHHHHHHHHTTCSEE
T ss_pred             E-EECCCCCCCCCCHHHHHHHHHHhCCC---CcEEEECCCCC----HHHHHHHHHhCchHH
Confidence            9 3344   2334555555544443222   3333322 122    366777888999965

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=95.76  E-value=0.41  Score=44.36  Aligned_cols=159  Identities=13%  Similarity=0.103  Sum_probs=97.7

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEE------------EeCCHhhHHHHHH
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPV------------LTPNLKGFEAAVA  183 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~------------l~~n~~~ie~a~~  183 (398)
                      .+.....++++...+.|...|+++.            . +.++.+++..+..+.+            +.+..++++.+++
T Consensus        33 ~~~~~~~~~A~a~~~~Ga~~i~~~~------------~-~~i~~ir~~v~~Pvig~~k~d~~~~~~~I~~~~~~i~~~~~   99 (232)
T 3igs_A           33 DKPEIVAAMALAAEQAGAVAVRIEG------------I-DNLRMTRSLVSVPIIGIIKRDLDESPVRITPFLDDVDALAQ   99 (232)
T ss_dssp             CSHHHHHHHHHHHHHTTCSEEEEES------------H-HHHHHHHTTCCSCEEEECBCCCSSCCCCBSCSHHHHHHHHH
T ss_pred             CCcchHHHHHHHHHHCCCeEEEECC------------H-HHHHHHHHhcCCCEEEEEeecCCCcceEeCccHHHHHHHHH
Confidence            4678889999999999999999963            1 3455666544444322            1245567889999


Q ss_pred             cCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 015894          184 AGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCS  263 (398)
Q Consensus       184 ~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad  263 (398)
                      .|+|.|.+-...-         .++    +.+.++++.++++|+.+.+.+           .+.++    ++.+.+.|+|
T Consensus       100 ~Gad~V~l~~~~~---------~~p----~~l~~~i~~~~~~g~~v~~~v-----------~t~ee----a~~a~~~Gad  151 (232)
T 3igs_A          100 AGAAIIAVDGTAR---------QRP----VAVEALLARIHHHHLLTMADC-----------SSVDD----GLACQRLGAD  151 (232)
T ss_dssp             HTCSEEEEECCSS---------CCS----SCHHHHHHHHHHTTCEEEEEC-----------CSHHH----HHHHHHTTCS
T ss_pred             cCCCEEEECcccc---------CCH----HHHHHHHHHHHHCCCEEEEeC-----------CCHHH----HHHHHhCCCC
Confidence            9999887644320         001    234567788888898775321           23433    5667789999


Q ss_pred             EEEE--ccC-cC--cCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchH-HHHHHHHHHhCCCEEee
Q 015894          264 EISL--GDT-IG--VGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQA-LSNILASLQMGISTVDS  323 (398)
Q Consensus       264 ~I~L--~DT-~G--~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA-~ANalaAl~aGa~~VD~  323 (398)
                      .|.+  -+- .+  ...|  -.++++.+++.  ++|+-.=    -|.. ..++..++++||+.|=+
T Consensus       152 ~Ig~~~~g~t~~~~~~~~--~~~~i~~l~~~--~ipvIA~----GGI~t~~d~~~~~~~GadgV~V  209 (232)
T 3igs_A          152 IIGTTMSGYTTPDTPEEP--DLPLVKALHDA--GCRVIAE----GRYNSPALAAEAIRYGAWAVTV  209 (232)
T ss_dssp             EEECTTTTSSSSSCCSSC--CHHHHHHHHHT--TCCEEEE----SCCCSHHHHHHHHHTTCSEEEE
T ss_pred             EEEEcCccCCCCCCCCCC--CHHHHHHHHhc--CCcEEEE----CCCCCHHHHHHHHHcCCCEEEE
Confidence            9963  111 11  1122  12456666654  3344432    3443 57777888899986644

>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*

Probab=95.74  E-value=0.65  Score=44.27  Aligned_cols=202  Identities=14%  Similarity=0.127  Sum_probs=110.0

Q ss_pred             cEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCC-CCCcccCCCCHHHHHHHHH---hc--cCCcEEEE
Q 015894           98 VKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFV-SPKWVPQLADAKDVMAAIQ---NV--EGARFPVL  171 (398)
Q Consensus        98 I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~-~~~~~p~~~D~~~v~~~i~---~~--~~~~l~~l  171 (398)
                      +-|+-+|+ |-..--|..++.+..++-++.|.+.|.+.|++|--. .|...| ....+|+.+.++   .+  +++.+++=
T Consensus        10 MGIlNvTP-DSFsDGG~~~~~~~a~~~a~~m~~~GAdiIDIGgeSTRPga~~-vs~eeE~~Rv~pvi~~l~~~~v~iSID   87 (270)
T 4hb7_A           10 MGILNVTP-DSFSDGGKFNNVETAINRVKAMIDEGADIIDVGGVSTRPGHEM-VTLEEELNRVLPVVEAIVGFDVKISVD   87 (270)
T ss_dssp             EEEEECC-----------CHHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCC-CCHHHHHHHHHHHHHHHTTSSSEEEEE
T ss_pred             EEEEeCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCC-CchHHHHHHHHHHHHHhhcCCCeEEEE
Confidence            44666665 333322334678888999999999999999999643 243222 112233333333   33  34555544


Q ss_pred             eCCHhhHHHHHHcCCCEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCC---H
Q 015894          172 TPNLKGFEAAVAAGAKEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVP---P  247 (398)
Q Consensus       172 ~~n~~~ie~a~~~Gv~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~---~  247 (398)
                      +...+-.+.|+++|++.|.=.. ...|                  .++.+.+.+.+..+.  +|..-+.|.....-   .
T Consensus        88 T~~~~Va~~al~aGa~iINDVs~g~~d------------------~~m~~~va~~~~~~v--lMH~~~~p~~~~vv~ev~  147 (270)
T 4hb7_A           88 TFRSEVAEACLKLGVDMINDQWAGLYD------------------HRMFQIVAKYDAEII--LMHNGNGNRDEPVVEEML  147 (270)
T ss_dssp             CSCHHHHHHHHHHTCCEEEETTTTSSC------------------THHHHHHHHTTCEEE--EECCCSSCCSSCHHHHHH
T ss_pred             CCCHHHHHHHHHhccceeccccccccc------------------hhHHHHHHHcCCCeE--EeccccCCccccchhHHH
Confidence            5667778899999999876321 1111                  134456677887664  66554444211100   1


Q ss_pred             HHHHHHHHHHHhCCCC--EEEEccCcCcC-CHHHHHHHHHHHHhh----CCCCeEEE-------E--eCC-----ccchH
Q 015894          248 SKVAYVSKQLYDMGCS--EISLGDTIGVG-TPGTVIPMLEAVLDA----VPVDKLAV-------H--FHD-----TYGQA  306 (398)
Q Consensus       248 ~~l~~~a~~l~~~Gad--~I~L~DT~G~~-~P~~v~~lv~~l~~~----~p~~~l~~-------H--~Hn-----d~GlA  306 (398)
                      +++.+-++.+.++|++  .|.|==-.|.+ ++++-.++++.+.+-    +|. -+++       +  ..+     ...-.
T Consensus       148 ~~l~~~i~~a~~aGI~~~~IilDPGiGFgKt~~~N~~ll~~l~~~~~lg~Pv-LvG~SRKsfig~~lg~~~~~~~R~~gt  226 (270)
T 4hb7_A          148 TSLLAQAHQAKIAGIPSNKIWLDPGIGFAKTRNEEAEVMARLDELVATEYPV-LLATSRKRFTKEMMGYDTTPVERDEVT  226 (270)
T ss_dssp             HHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHTCHHHHHTTCSCB-EECCTTSHHHHHHHCSCCCSGGGHHHH
T ss_pred             HHHHHHHHHHHHcCCCCceEEEeCCCCcccccccHHHHHhhHHHHhcCCCCE-EEEecHHHHHHHHhCCCCChHHhhHHH
Confidence            3445556677889984  56664455554 356666777666532    342 1221       0  111     12223


Q ss_pred             HHHHHHHHHhCCCEEe
Q 015894          307 LSNILASLQMGISTVD  322 (398)
Q Consensus       307 ~ANalaAl~aGa~~VD  322 (398)
                      +|.+..|+..||++|=
T Consensus       227 ~a~~~~a~~~Ga~ivR  242 (270)
T 4hb7_A          227 AATTAYGIMKGVRAVR  242 (270)
T ss_dssp             HHHHHHHHHHTCCEEE
T ss_pred             HHHHHHHHHCCCCEEE
Confidence            5566677888998773

>2vef_A Dihydropteroate synthase; antibiotic resistance, transferase, folate biosynthesis; 1.8A {Streptococcus pneumoniae} PDB: 2veg_A*

Probab=95.67  E-value=0.75  Score=44.70  Aligned_cols=206  Identities=15%  Similarity=0.129  Sum_probs=109.4

Q ss_pred             ccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCC-CCCcccCCCCHHHHHHHH---Hhc---cCCcEE
Q 015894           97 FVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFV-SPKWVPQLADAKDVMAAI---QNV---EGARFP  169 (398)
Q Consensus        97 ~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~-~~~~~p~~~D~~~v~~~i---~~~---~~~~l~  169 (398)
                      =+-|+-+|+ |-..--|..++.+..++.+..+.+.|.+.|++|.-. .|...+ ....+|+.+.+   +.+   .++.++
T Consensus        12 iMGIlNvTP-DSFsdgg~~~~~~~a~~~a~~~v~~GAdIIDIGgeSTrPGa~~-v~~~eE~~Rv~pvI~~l~~~~~vpiS   89 (314)
T 2vef_A           12 ICGIINVTP-DSFSDGGQFFALEQALQQARKLIAEGASMLDIGGESTRPGSSY-VEIEEEIQRVVPVIKAIRKESDVLIS   89 (314)
T ss_dssp             EEEEEECCC----------CHHHHHHHHHHHHHHTTCSEEEEECCC-----CH-HHHHHHHHHHHHHHHHHHHHCCCEEE
T ss_pred             EEEEEeCCC-CCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCC-CCHHHHHHHHHHHHHHHHhhCCceEE
Confidence            345666665 333332334678889999999999999999999743 232111 11113333222   222   255555


Q ss_pred             EEeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeee--cCCCCCC---
Q 015894          170 VLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVV--GCPVEGM---  244 (398)
Q Consensus       170 ~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~f--g~~~~~r---  244 (398)
                      .=+.+.+-+++|+++|++.|.=.   |-      ...+        .++.+.++++|..+.  ++..=  |.|....   
T Consensus        90 IDT~~~~Va~aAl~aGa~iINDV---sg------~~~d--------~~m~~v~a~~~~~vv--lmh~~~~g~p~~~~~~~  150 (314)
T 2vef_A           90 IDTWKSQVAEAALAAGADLVNDI---TG------LMGD--------EKMPHVVAEARAQVV--IMFNPVMARPQHPSSLI  150 (314)
T ss_dssp             EECSCHHHHHHHHHTTCCEEEET---TT------TCSC--------TTHHHHHHHHTCEEE--EECCHHHHCTTSTTTTT
T ss_pred             EeCCCHHHHHHHHHcCCCEEEEC---CC------CCCC--------hHHHHHHHHcCCCEE--EEecCCCCCCCCccccc
Confidence            55677888999999999877532   21      1111        133455677887664  44321  1121100   


Q ss_pred             ---------CC-----------H-----HHHHHHHHHHHhCCCC--EEEEccC-cCc-CCHHHHHHHHHHHHhhC-CCCe
Q 015894          245 ---------VP-----------P-----SKVAYVSKQLYDMGCS--EISLGDT-IGV-GTPGTVIPMLEAVLDAV-PVDK  294 (398)
Q Consensus       245 ---------~~-----------~-----~~l~~~a~~l~~~Gad--~I~L~DT-~G~-~~P~~v~~lv~~l~~~~-p~~~  294 (398)
                               .+           .     +++.+.++.+.++|++  .|.| |. +|. -+.++-.++++.+++.. ++.|
T Consensus       151 ~~~~~~g~~~~~~~~~~y~d~~v~e~v~~~l~~~i~~a~~~GI~~~~Iil-DPGiGF~kt~~~nl~ll~~l~~l~~~g~P  229 (314)
T 2vef_A          151 FPHFGFGQAFTEEELADFETLPIEELMEAFFERALARAAEAGIAPENILL-DPGIGFGLTKKENLLLLRDLDKLHQKGYP  229 (314)
T ss_dssp             SCCCCC--CCCC--CHHHHHSCHHHHHHHHHHHHHHHHHHHTCCGGGEEE-ECCTTSSCCHHHHHHHHHTHHHHHTTSSC
T ss_pred             ccccccccccccccccccccchHHHHHHHHHHHHHHHHHHcCCChhhEEE-eCCCCcccchHHHHHHHHHHHHhhcCCCC
Confidence                     00           1     3344556677789984  4554 54 343 34566677777776542 3444


Q ss_pred             EEEEeCC------------------------ccchH-HHHHHHHHHhCCCEEeec
Q 015894          295 LAVHFHD------------------------TYGQA-LSNILASLQMGISTVDSS  324 (398)
Q Consensus       295 l~~H~Hn------------------------d~GlA-~ANalaAl~aGa~~VD~S  324 (398)
                      +-+=.-|                        +...+ .+-+..|+..|+++|.+.
T Consensus       230 vL~G~SrKsfig~~~~~~g~~~~p~tel~~~~R~~~t~a~~~~a~~~Ga~IvRvH  284 (314)
T 2vef_A          230 IFLGVSRKRFVINILEENGFEVNPETELGFRNRDTASAHVTSIAARQGVEVVRVH  284 (314)
T ss_dssp             BEEECSSCHHHHHHHHHTTCCCCTTSHHHHHHHHHHHHHHHHHHHHTTCSEEEES
T ss_pred             EEEEeCccHHHhhhhccccccCCcccccchhhhhHHHHHHHHHHHHcCCcEEEeC
Confidence            4442222                        11122 344566788999888654

>2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1

Probab=95.47  E-value=0.32  Score=46.66  Aligned_cols=200  Identities=16%  Similarity=0.116  Sum_probs=116.7

Q ss_pred             EEeCCCcccCCCCCCCCCHHHHHHHHHHHHhc--CCCEEEEecCCCCCcccCCCCHHHHHHHHH--hcc-CCcEEEEe--
Q 015894          100 IVEVGPRDGLQNEKNIVPAVVKVELIKLLVSS--GLAVVEATSFVSPKWVPQLADAKDVMAAIQ--NVE-GARFPVLT--  172 (398)
Q Consensus       100 i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~a--Gv~~IEvG~~~~~~~~p~~~D~~~v~~~i~--~~~-~~~l~~l~--  172 (398)
                      .+|-|+=      +-.-+.++..++++...+.  |+..+-+    +|.|+|      ...+.++  ..+ ++++.+.+  
T Consensus        35 ~IDhTlL------~p~~T~~dI~~lc~eA~~~~~~~aaVCV----~p~~V~------~a~~~L~~~gs~~~v~v~tVigF   98 (281)
T 2a4a_A           35 LTDHTFL------DENGTEDDIRELCNESVKTCPFAAAVCV----YPKFVK------FINEKIKQEINPFKPKIACVINF   98 (281)
T ss_dssp             TEEEECC------CTTCCHHHHHHHHHHHHSSSSCCSEEEE----CGGGHH------HHHHHHHHHSSSCCSEEEEEEST
T ss_pred             HcchhcC------CCCCCHHHHHHHHHHHHhccCCccEEEE----CHHHHH------HHHHHhhccCCCCCceEEEEeCC
Confidence            4566663      2245788889999999999  9999876    344443      3334444  223 56776655  


Q ss_pred             C----C----HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHH---HHHHHHHHHHHHHHhCCCcEEEEEeeeecCCC
Q 015894          173 P----N----LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIE---DSLIRYRDVALAARELSIPVRGYLSCVVGCPV  241 (398)
Q Consensus       173 ~----n----~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~---~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~  241 (398)
                      |    +    ...++.|++.|+++|.+.+.......     -..+   +..+.+..+.+.|.  +..+-+-|.  .+   
T Consensus        99 P~G~~~~~~Kv~E~~~Av~~GAdEIDmVinig~lks-----g~~~~~~~v~~eI~~v~~a~~--~~~lKVIlE--t~---  166 (281)
T 2a4a_A           99 PYGTDSMEKVLNDTEKALDDGADEIDLVINYKKIIE-----NTDEGLKEATKLTQSVKKLLT--NKILKVIIE--VG---  166 (281)
T ss_dssp             TTCCSCHHHHHHHHHHHHHHTCSEEEEECCHHHHHH-----SHHHHHHHHHHHHHHHHTTCT--TSEEEEECC--HH---
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCEEEEecchHhhhC-----CChhHHHHHHHHHHHHHHHhc--CCceEEEEe--cc---
Confidence            2    1    13678899999999999887553311     1223   44555554444443  333332232  21   


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCEEEEc--cCcCcCCHHHHHHHHHHHHhh-------CCCCeEEEEeC---CccchHHHH
Q 015894          242 EGMVPPSKVAYVSKQLYDMGCSEISLG--DTIGVGTPGTVIPMLEAVLDA-------VPVDKLAVHFH---DTYGQALSN  309 (398)
Q Consensus       242 ~~r~~~~~l~~~a~~l~~~Gad~I~L~--DT~G~~~P~~v~~lv~~l~~~-------~p~~~l~~H~H---nd~GlA~AN  309 (398)
                       ...+.+.+...++.+.++|+|.|--.  =+.|..+|+++.-+.+.+++.       -+  ++++-.=   .|+--|++-
T Consensus       167 -~L~d~e~i~~A~~ia~eaGADfVKTSTGf~~~gAT~edv~lm~~~v~~~~~~~~~tg~--~vgVKaaGGIrt~e~al~~  243 (281)
T 2a4a_A          167 -ELKTEDLIIKTTLAVLNGNADFIKTSTGKVQINATPSSVEYIIKAIKEYIKNNPEKNN--KIGLKVSGGISDLNTASHY  243 (281)
T ss_dssp             -HHCSHHHHHHHHHHHHTTTCSEEECCCSCSSCCCCHHHHHHHHHHHHHHHHHCGGGTT--CCEEEEESSCCSHHHHHHH
T ss_pred             -cCCcHHHHHHHHHHHHHhCCCEEEeCCCCCCCCCCHHHHHHHHHHHHHhhcccccCCC--CceEEEeCCCCCHHHHHHH
Confidence             22456667788999999999988755  234678999999888887642       12  2333211   155555544


Q ss_pred             HHHHH-HhCCCEEeeccccCCC
Q 015894          310 ILASL-QMGISTVDSSVSGLGG  330 (398)
Q Consensus       310 alaAl-~aGa~~VD~Sv~GlGe  330 (398)
                      ..++. ..|.+|++....=+|-
T Consensus       244 i~aga~~lG~~w~~~~~~RiGt  265 (281)
T 2a4a_A          244 ILLARRFLSSLACHPDNFRIGS  265 (281)
T ss_dssp             HHHHHHHTC------CCEEEEE
T ss_pred             HHHhhhhccccccccCceEEec
Confidence            44433 3677788777777776

>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*

Probab=95.43  E-value=0.43  Score=45.40  Aligned_cols=163  Identities=12%  Similarity=0.076  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEE--EeCCHhhHHHHHHcCCCEEEEeccCch
Q 015894          120 VKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPV--LTPNLKGFEAAVAAGAKEVAIFASASE  197 (398)
Q Consensus       120 ~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~n~~~ie~a~~~Gv~~v~i~~~~Sd  197 (398)
                      +-.++++...+.|...|.+-..  +++.   .-..+.++.+++..+..+..  +..+..+++.|.++|+|.|.+-...-+
T Consensus        73 ~p~~~A~~y~~~GA~~isvltd--~~~f---~Gs~~~l~~ir~~v~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l~  147 (272)
T 3qja_A           73 DPAKLAQAYQDGGARIVSVVTE--QRRF---QGSLDDLDAVRASVSIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALE  147 (272)
T ss_dssp             CHHHHHHHHHHTTCSEEEEECC--GGGH---HHHHHHHHHHHHHCSSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGSC
T ss_pred             CHHHHHHHHHHcCCCEEEEecC--hhhc---CCCHHHHHHHHHhCCCCEEECccccCHHHHHHHHHcCCCEEEEecccCC
Confidence            4478999999999999998421  1111   11123445555433332221  223566789999999999998544211


Q ss_pred             HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHH
Q 015894          198 SFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPG  277 (398)
Q Consensus       198 ~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~  277 (398)
                                    .+.+.++++.++++|+.+-+.+           .+++++.    .+.++|++.|.+.-......+.
T Consensus       148 --------------~~~l~~l~~~a~~lGl~~lvev-----------~t~ee~~----~A~~~Gad~IGv~~r~l~~~~~  198 (272)
T 3qja_A          148 --------------QSVLVSMLDRTESLGMTALVEV-----------HTEQEAD----RALKAGAKVIGVNARDLMTLDV  198 (272)
T ss_dssp             --------------HHHHHHHHHHHHHTTCEEEEEE-----------SSHHHHH----HHHHHTCSEEEEESBCTTTCCB
T ss_pred             --------------HHHHHHHHHHHHHCCCcEEEEc-----------CCHHHHH----HHHHCCCCEEEECCCccccccc
Confidence                          1345677888999999864211           2455543    3446799998887433222222


Q ss_pred             HHHHHHHHHHhhCC-CCeEEEEeCCccchH-HHHHHHHHHhCCCEE
Q 015894          278 TVIPMLEAVLDAVP-VDKLAVHFHDTYGQA-LSNILASLQMGISTV  321 (398)
Q Consensus       278 ~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA-~ANalaAl~aGa~~V  321 (398)
                      .+ +.+..+++.+| +.++-.=    -|.. ..++....++|++.|
T Consensus       199 dl-~~~~~l~~~v~~~~pvVae----gGI~t~edv~~l~~~Gadgv  239 (272)
T 3qja_A          199 DR-DCFARIAPGLPSSVIRIAE----SGVRGTADLLAYAGAGADAV  239 (272)
T ss_dssp             CT-THHHHHGGGSCTTSEEEEE----SCCCSHHHHHHHHHTTCSEE
T ss_pred             CH-HHHHHHHHhCcccCEEEEE----CCCCCHHHHHHHHHcCCCEE
Confidence            22 23445555565 4444432    2333 467777788998855

>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}

Probab=95.36  E-value=0.63  Score=43.17  Aligned_cols=143  Identities=15%  Similarity=0.114  Sum_probs=76.0

Q ss_pred             HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894          178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL  257 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l  257 (398)
                      ++.|.+.|++.|.+..+..+.    ...-..+...+.+.++.++|++.|+.+.  +..      . ..+++.+.++++.+
T Consensus       108 i~~a~~lG~~~v~~~~G~~~~----~~~~~~~~~~~~l~~l~~~a~~~Gv~l~--lE~------~-~~~~~~~~~l~~~~  174 (290)
T 3tva_A          108 SDFASWVGCPAIGLHIGFVPE----SSSPDYSELVRVTQDLLTHAANHGQAVH--LET------G-QESADHLLEFIEDV  174 (290)
T ss_dssp             HHHHHHHTCSEEEECCCCCCC----TTSHHHHHHHHHHHHHHHHHHTTTCEEE--EEC------C-SSCHHHHHHHHHHH
T ss_pred             HHHHHHcCCCEEEEcCCCCcc----cchHHHHHHHHHHHHHHHHHHHcCCEEE--Eec------C-CCCHHHHHHHHHhc
Confidence            556777899998886442110    0111245567777888899999998754  221      1 13566666665543


Q ss_pred             HhCCCCEE-EEccCcCcCC-H-HHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCC
Q 015894          258 YDMGCSEI-SLGDTIGVGT-P-GTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYA  334 (398)
Q Consensus       258 ~~~Gad~I-~L~DT~G~~~-P-~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a  334 (398)
                         +.+.+ ..-|+.=... - .+..+.++.+..    --.++|+||..+-..      -.-|..+-.-.  .+      
T Consensus       175 ---~~~~~g~~~D~~h~~~~g~~d~~~~l~~~~~----~i~~vHl~D~~~~~~------~~~g~~~~~~~--~~------  233 (290)
T 3tva_A          175 ---NRPNLGINFDPANMILYGTGNPIEALRKVAR----YVRSIHCKDALWAPV------NERGKSWGQEV--AL------  233 (290)
T ss_dssp             ---CCTTEEEEECHHHHHHTTCSCHHHHHHHHGG----GEEEEEECEEECCCG------GGBTTBCCEEE--ST------
T ss_pred             ---CCCCEEEEeccHHHHHhCCCCHHHHHHHHHh----hheEEEeccccCCCc------ccccccccccc--CC------
Confidence               43322 3335422211 0 122333444332    247889998754210      00111110001  11      


Q ss_pred             CCCCCCccHHHHHHHHHhCCCC
Q 015894          335 KGASGNVATEDVVYMLNGLGVR  356 (398)
Q Consensus       335 ~graGNa~lE~vv~~L~~~Gi~  356 (398)
                        +.|..+...++..|++.|++
T Consensus       234 --G~G~id~~~~~~~L~~~gy~  253 (290)
T 3tva_A          234 --GTGDVGMEAYLTTLWEIGYR  253 (290)
T ss_dssp             --TSSSSCHHHHHHHHHHTTCC
T ss_pred             --CCceeCHHHHHHHHHHcCCC
Confidence              36789999999999987664

>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*

Probab=95.35  E-value=0.88  Score=40.74  Aligned_cols=156  Identities=12%  Similarity=0.123  Sum_probs=94.9

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEE---EeCCHhhHHHHHHcCCCEEEEe
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPV---LTPNLKGFEAAVAAGAKEVAIF  192 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~---l~~n~~~ie~a~~~Gv~~v~i~  192 (398)
                      .+.++-.++++.+.+.|++.|++.... +.      ..+.+.+..+.. +..+.+   -+.+...++.++++|++.|++ 
T Consensus        16 ~d~~~~~~~~~~~~~~G~~~i~l~~~~-~~------~~~~i~~i~~~~-~~~l~vg~g~~~~~~~i~~a~~~Gad~V~~-   86 (212)
T 2v82_A           16 ITPDEALAHVGAVIDAGFDAVEIPLNS-PQ------WEQSIPAIVDAY-GDKALIGAGTVLKPEQVDALARMGCQLIVT-   86 (212)
T ss_dssp             CCHHHHHHHHHHHHHHTCCEEEEETTS-TT------HHHHHHHHHHHH-TTTSEEEEECCCSHHHHHHHHHTTCCEEEC-
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEeCCC-hh------HHHHHHHHHHhC-CCCeEEEeccccCHHHHHHHHHcCCCEEEe-
Confidence            456777899999999999999997542 11      122222222222 232221   124567899999999999873 


Q ss_pred             ccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcC
Q 015894          193 ASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIG  272 (398)
Q Consensus       193 ~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G  272 (398)
                       +..+                  .++++.++++|..+.+      |     -.+++.+    ..+.+.|+|.|.+--|. 
T Consensus        87 -~~~~------------------~~~~~~~~~~g~~~~~------g-----~~t~~e~----~~a~~~G~d~v~v~~t~-  131 (212)
T 2v82_A           87 -PNIH------------------SEVIRRAVGYGMTVCP------G-----CATATEA----FTALEAGAQALKIFPSS-  131 (212)
T ss_dssp             -SSCC------------------HHHHHHHHHTTCEEEC------E-----ECSHHHH----HHHHHTTCSEEEETTHH-
T ss_pred             -CCCC------------------HHHHHHHHHcCCCEEe------e-----cCCHHHH----HHHHHCCCCEEEEecCC-
Confidence             2111                  1346777888987531      1     1245543    34567999998873221 


Q ss_pred             cCCHHHHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          273 VGTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       273 ~~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                         |. -.+.++.+++.+| ++++..=+    |....|....+++||+.|-+
T Consensus       132 ---~~-g~~~~~~l~~~~~~~ipvia~G----GI~~~~i~~~~~~Ga~gv~v  175 (212)
T 2v82_A          132 ---AF-GPQYIKALKAVLPSDIAVFAVG----GVTPENLAQWIDAGCAGAGL  175 (212)
T ss_dssp             ---HH-CHHHHHHHHTTSCTTCEEEEES----SCCTTTHHHHHHHTCSEEEE
T ss_pred             ---CC-CHHHHHHHHHhccCCCeEEEeC----CCCHHHHHHHHHcCCCEEEE
Confidence               11 2356667776666 45665533    34446777888899997754

>3glc_A Aldolase LSRF; TIM barrel, lyase, schiff base; HET: R5P; 2.50A {Escherichia coli} PDB: 3gnd_A* 3gkf_O

Probab=95.35  E-value=0.52  Score=45.44  Aligned_cols=125  Identities=16%  Similarity=0.123  Sum_probs=83.4

Q ss_pred             hHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHH
Q 015894          177 GFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQ  256 (398)
Q Consensus       177 ~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~  256 (398)
                      .++.|++.|++.|.+.+...+        -...+.++.+.++++.|+++|+.+..  +...|...  ..+++.+...++.
T Consensus       130 ~ve~Av~~GAdaV~~~i~~Gs--------~~~~~~l~~i~~v~~~a~~~GlpvIi--e~~~G~~~--~~d~e~i~~aari  197 (295)
T 3glc_A          130 SMDDAVRLNSCAVAAQVYIGS--------EYEHQSIKNIIQLVDAGMKVGMPTMA--VTGVGKDM--VRDQRYFSLATRI  197 (295)
T ss_dssp             CHHHHHHTTCSEEEEEECTTS--------TTHHHHHHHHHHHHHHHHTTTCCEEE--EECC------CCSHHHHHHHHHH
T ss_pred             HHHHHHHCCCCEEEEEEECCC--------CcHHHHHHHHHHHHHHHHHcCCEEEE--ECCCCCcc--CCCHHHHHHHHHH
Confidence            588999999998877543321        13456888899999999999998753  22222111  2567777888999


Q ss_pred             HHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEe--CCccchHHHHHHHHHHhCCCEEee
Q 015894          257 LYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHF--HDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       257 l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~--Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      +.++|+|.|-..=|     +..+    +.+.+..+ +|+-+=+  +-+.--.+.++-.|+++||+.+-+
T Consensus       198 A~elGAD~VKt~~t-----~e~~----~~vv~~~~-vPVv~~GG~~~~~~~~l~~v~~ai~aGA~Gv~v  256 (295)
T 3glc_A          198 AAEMGAQIIKTYYV-----EKGF----ERIVAGCP-VPIVIAGGKKLPEREALEMCWQAIDQGASGVDM  256 (295)
T ss_dssp             HHHTTCSEEEEECC-----TTTH----HHHHHTCS-SCEEEECCSCCCHHHHHHHHHHHHHTTCSEEEE
T ss_pred             HHHhCCCEEEeCCC-----HHHH----HHHHHhCC-CcEEEEECCCCCHHHHHHHHHHHHHhCCeEEEe
Confidence            99999999888733     2333    44444443 3444433  223456688888999999985543

>4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A*

Probab=95.35  E-value=1.1  Score=43.16  Aligned_cols=205  Identities=13%  Similarity=0.069  Sum_probs=124.5

Q ss_pred             EEeCCCcccCCCCCCCCCHHHHHHHHHHHH-hcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc----cCCcEEEEe--
Q 015894          100 IVEVGPRDGLQNEKNIVPAVVKVELIKLLV-SSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV----EGARFPVLT--  172 (398)
Q Consensus       100 i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~-~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~----~~~~l~~l~--  172 (398)
                      ++|-|+      .+..-+.++..++++.-. +.++..+-+    +|.|+|      ...+.++..    .++++.+.+  
T Consensus        29 ~IDhTl------L~p~~T~e~I~~lc~eA~~~~~~aaVCV----~P~~V~------~a~~~L~~~~~~~s~v~V~tVigF   92 (297)
T 4eiv_A           29 FFEVAA------LTDGETNESVAAVCKIAAKDPAIVGVSV----RPAFVR------FIRQELVKSAPEVAGIKVCAAVNF   92 (297)
T ss_dssp             TEEEEE------CSTTCCHHHHHHHHHHHHSSSCCSEEEE----CGGGHH------HHHHTGGGTCGGGGGSEEEEEEST
T ss_pred             hcCccC------CCCCCCHHHHHHHHHHHHhhcCcEEEEE----CHHHHH------HHHHHhcccCcCCCCCeEEEEecC
Confidence            566666      233567788888888777 778777766    444443      223334321    356766654  


Q ss_pred             C---C-----HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC
Q 015894          173 P---N-----LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGM  244 (398)
Q Consensus       173 ~---n-----~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r  244 (398)
                      |   +     ....+.|++.|+++|.+.+.......  +..-..+...+.+..+.+.+.  +..+-+-|.  .    ..-
T Consensus        93 P~G~~~~e~K~~Ea~~Av~~GAdEIDmVinig~lk~--~~~g~~~~V~~eI~~v~~a~~--~~~lKVIlE--t----~~L  162 (297)
T 4eiv_A           93 PEGTGTPDTVSLEAVGALKDGADEIECLIDWRRMNE--NVADGESRIRLLVSEVKKVVG--PKTLKVVLS--G----GEL  162 (297)
T ss_dssp             TTCCCCHHHHHHHHHHHHHTTCSEEEEECCTHHHHH--CHHHHHHHHHHHHHHHHHHHT--TSEEEEECC--S----SCC
T ss_pred             CCCCCCHHHHHHHHHHHHHcCCCEEEeeeeHHHHhc--ccCCcHHHHHHHHHHHHHHhc--CCceEEEEe--c----ccC
Confidence            3   1     13567889999999999988755322  111134456666666666663  333332222  1    122


Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEccC--cCcCCHHHHHHHHHHHHhhC---C--------------CCeEEEEeC----C
Q 015894          245 VPPSKVAYVSKQLYDMGCSEISLGDT--IGVGTPGTVIPMLEAVLDAV---P--------------VDKLAVHFH----D  301 (398)
Q Consensus       245 ~~~~~l~~~a~~l~~~Gad~I~L~DT--~G~~~P~~v~~lv~~l~~~~---p--------------~~~l~~H~H----n  301 (398)
                      .+.+.....++.+.++|+|-|--.--  .|.++|++++-+.+.+++.+   |              ...+++-.-    .
T Consensus       163 t~~e~i~~A~~ia~~AGADFVKTSTGf~~~gAT~edV~lM~~~v~~~~~~~~~~~~~~~~~~~~~tg~~vgvKAs~GGIr  242 (297)
T 4eiv_A          163 QGGDIISRAAVAALEGGADFLQTSSGLGATHATMFTVHLISIALREYMVRENERIRVEGINREGAAVRCIGIKIEVGDVH  242 (297)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEECCCSSSSCCCCHHHHHHHHHHHHHHHCC------------------CCEEEEECTTCC
T ss_pred             CcHHHHHHHHHHHHHhCCCEEEcCCCCCCCCCCHHHHHHHHHHHHHHhccccccccccccccccccCCceeEEecCCCCC
Confidence            34555678888899999997755443  24689999999999987432   1              123566555    5


Q ss_pred             ccchHHHHHHHHHHhCCCEEeeccccCCC
Q 015894          302 TYGQALSNILASLQMGISTVDSSVSGLGG  330 (398)
Q Consensus       302 d~GlA~ANalaAl~aGa~~VD~Sv~GlGe  330 (398)
                      |+--|.+-.-++-+.|-++++....=+|.
T Consensus       243 t~e~A~~~i~~~~elG~~wl~~~~fRiGa  271 (297)
T 4eiv_A          243 MAETADFLMQMIFENGPRSIVRDKFRVGG  271 (297)
T ss_dssp             HHHHHHHHHHHHHHHCGGGCSTTTEEEEE
T ss_pred             CHHHHHHHHHHHHHhCccccCCCceEecc
Confidence            55566655555555777777766666665

>3qxb_A Putative xylose isomerase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology; 1.90A {Rhodospirillum rubrum}

Probab=95.33  E-value=0.35  Score=45.80  Aligned_cols=203  Identities=14%  Similarity=0.048  Sum_probs=107.1

Q ss_pred             HHHHHHHhcCCCEEEEecCCCCCcccC-C--CCHHHHHHHHHhccCCcEEEEeC--------C-----H-----------
Q 015894          123 ELIKLLVSSGLAVVEATSFVSPKWVPQ-L--ADAKDVMAAIQNVEGARFPVLTP--------N-----L-----------  175 (398)
Q Consensus       123 ~ia~~L~~aGv~~IEvG~~~~~~~~p~-~--~D~~~v~~~i~~~~~~~l~~l~~--------n-----~-----------  175 (398)
                      .+.+.+.++|++.||+.......+.|. .  .+.+++.+.+++ .++++.++..        |     .           
T Consensus        39 ~~~~~a~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gl~i~~~~~~~~~~~~~~l~~~d~~~r~~~~~~~~  117 (316)
T 3qxb_A           39 LAGLVRDDLGLEYVQYTYDLTDPWWPDIERDRRAIAYAKAFRK-AGLTIESTFGGLASYTYNHFLAPTLELQSLGYQHLK  117 (316)
T ss_dssp             HHHHHHHTSCCCEEEEETTTSCTTSCHHHHHHHHHHHHHHHHH-TTCEEEEEECCHHHHTSCBTTCSSHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEeeccccCccccccchhhHHHHHHHHHHH-cCCeEEEeeccccccccccCCCCCHHHHHHHHHHHH
Confidence            456777899999999986432111110 0  022333333332 3566554321        1     1           


Q ss_pred             hhHHHHHHcCCCEEEEeccC-c-hHHHh-hhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHH
Q 015894          176 KGFEAAVAAGAKEVAIFASA-S-ESFSK-SNINCTIEDSLIRYRDVALAARELSIP-VRGYLSCVVGCPVEGMVPPSKVA  251 (398)
Q Consensus       176 ~~ie~a~~~Gv~~v~i~~~~-S-d~~~~-~~~~~s~~~~l~~~~~~v~~ak~~G~~-v~~~l~~~fg~~~~~r~~~~~l~  251 (398)
                      +.++.|.+.|++.|.+.... + ..+.. ....-..+...+.+.++.++|++.|+. +.  +...-.. ...-.+++.+.
T Consensus       118 ~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~~l~--lE~~~~~-~~~~~t~~~~~  194 (316)
T 3qxb_A          118 RAIDMTAAMEVPATGMPFGSYSAADALNPARREEIYAIARDMWIELAAYAKRQGLSMLY--VEPVPLA-TEFPSSAADAA  194 (316)
T ss_dssp             HHHHHHHHTTCCEEEECCBBCCHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEE--ECCCSCT-TBSSCSHHHHH
T ss_pred             HHHHHHHHcCCCEEEecCCCcCccccCCcccHHHHHHHHHHHHHHHHHHHHhcCCeEEE--EEecCCc-cccCCCHHHHH
Confidence            12556778899988764332 1 00000 000001344667778888999999987 64  3210000 11224678888


Q ss_pred             HHHHHHHhCCCCEE-EEccCcCcCC------HHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894          252 YVSKQLYDMGCSEI-SLGDTIGVGT------PGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       252 ~~a~~l~~~Gad~I-~L~DT~G~~~------P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S  324 (398)
                      ++++.+.+.+.+.+ ..-||.=...      -....+.++.+..+    -.++|++|..+.            .   |. 
T Consensus       195 ~l~~~v~~~~~~~vg~~lD~~H~~~~~~~~~~~d~~~~l~~~~~~----i~~vHlkD~~~~------------~---d~-  254 (316)
T 3qxb_A          195 RLMADLDGRTEIPVRLLVDWGHALFEPLFGPEADMDHWMDLCQPW----IAAYHIQQTDGQ------------L---DR-  254 (316)
T ss_dssp             HHHHHHTTTSSSCEEEEEEHHHHTCHHHHGGGCSHHHHHHHHGGG----EEEEEECBCCSS------------S---CC-
T ss_pred             HHHHHHhccCCCCEEEEEEccchheecccccccCHHHHHHHHHhh----heEEeeecCCCC------------c---Cc-
Confidence            88877654455444 3446532221      11233444444332    368999997651            0   10 


Q ss_pred             cccCCCCCCCCCCCCCccHHHHHHHHHhCCCC
Q 015894          325 VSGLGGCPYAKGASGNVATEDVVYMLNGLGVR  356 (398)
Q Consensus       325 v~GlGecp~a~graGNa~lE~vv~~L~~~Gi~  356 (398)
                      -.++      + +.|..+.+.++..|++.|++
T Consensus       255 h~~~------~-G~G~id~~~i~~~L~~~gy~  279 (316)
T 3qxb_A          255 HWSF------T-QPGVVTPQRLQDFWDKYALT  279 (316)
T ss_dssp             CBCT------T-SCSSCCHHHHHHHHHHTTCS
T ss_pred             cCCC------C-CCceECHHHHHHHHHHcCCC
Confidence            0011      1 25899999999999987664

>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1

Probab=95.30  E-value=0.63  Score=42.72  Aligned_cols=208  Identities=16%  Similarity=0.115  Sum_probs=108.3

Q ss_pred             HHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe--CCHhhHHHHHHcCCCEEEEeccCc
Q 015894          119 VVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT--PNLKGFEAAVAAGAKEVAIFASAS  196 (398)
Q Consensus       119 ~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~n~~~ie~a~~~Gv~~v~i~~~~S  196 (398)
                      ++-.++++.+.+.|++.|.+.-..... .+. ....+.++.+++..++.+.+..  ++.++++.++++|++.|.+-... 
T Consensus        31 ~d~~~~a~~~~~~Gad~i~v~d~~~~~-~~~-~~~~~~i~~i~~~~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~~-  107 (252)
T 1ka9_F           31 GDPVEAARAYDEAGADELVFLDISATH-EER-AILLDVVARVAERVFIPLTVGGGVRSLEDARKLLLSGADKVSVNSAA-  107 (252)
T ss_dssp             TCHHHHHHHHHHHTCSCEEEEECCSST-TCH-HHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHHTCSEEEECHHH-
T ss_pred             CCHHHHHHHHHHcCCCEEEEEcCCccc-cCc-cccHHHHHHHHHhCCCCEEEECCcCCHHHHHHHHHcCCCEEEEChHH-
Confidence            456889999999999988775221110 000 0112233444433355555443  46789999999999999884321 


Q ss_pred             hHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEeeee--c---CCCCCCC--CHHHHHHHHHHHHhCCCCEEEEc
Q 015894          197 ESFSKSNINCTIEDSLIRYRDVALAARELSI-PVRGYLSCVV--G---CPVEGMV--PPSKVAYVSKQLYDMGCSEISLG  268 (398)
Q Consensus       197 d~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~-~v~~~l~~~f--g---~~~~~r~--~~~~l~~~a~~l~~~Gad~I~L~  268 (398)
                        . ..         .+.+.++.+   ..|. .+...+.+-.  |   ....+..  +.....+.++.+.+.|++.|.+.
T Consensus       108 --l-~~---------p~~~~~~~~---~~~~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~~  172 (252)
T 1ka9_F          108 --V-RR---------PELIRELAD---HFGAQAVVLAIDARWRGDFPEVHVAGGRVPTGLHAVEWAVKGVELGAGEILLT  172 (252)
T ss_dssp             --H-HC---------THHHHHHHH---HHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHHTCCEEEEE
T ss_pred             --H-hC---------cHHHHHHHH---HcCCCcEEEEEEEecCCCCEEEEECCCccccCCcHHHHHHHHHHcCCCEEEEe
Confidence              0 00         011222222   3331 1211122100  0   0001100  01123455677778999988876


Q ss_pred             cC--cCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchH-HHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHH
Q 015894          269 DT--IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQA-LSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATED  345 (398)
Q Consensus       269 DT--~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA-~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~  345 (398)
                      ++  .|...... .++++.+++..+ +|+-.-    -|.. ..++....++||+.|=+.-.=+         .+.-+.++
T Consensus       173 ~~~~~g~~~g~~-~~~i~~l~~~~~-ipvia~----GGI~~~~d~~~~~~~Gadgv~vgsal~---------~~~~~~~~  237 (252)
T 1ka9_F          173 SMDRDGTKEGYD-LRLTRMVAEAVG-VPVIAS----GGAGRMEHFLEAFQAGAEAALAASVFH---------FGEIPIPK  237 (252)
T ss_dssp             ETTTTTTCSCCC-HHHHHHHHHHCS-SCEEEE----SCCCSHHHHHHHHHTTCSEEEESHHHH---------TTSSCHHH
T ss_pred             cccCCCCcCCCC-HHHHHHHHHHcC-CCEEEe----CCCCCHHHHHHHHHCCCHHHHHHHHHH---------cCCCCHHH
Confidence            43  34332212 456677777553 344332    2333 3677777788988653321111         22347889


Q ss_pred             HHHHHHhCCCCCcc
Q 015894          346 VVYMLNGLGVRTNV  359 (398)
Q Consensus       346 vv~~L~~~Gi~t~i  359 (398)
                      +...|++.|+....
T Consensus       238 ~~~~l~~~~~~~~~  251 (252)
T 1ka9_F          238 LKRYLAEKGVHVRL  251 (252)
T ss_dssp             HHHHHHHTTCCBCC
T ss_pred             HHHHHHHCCCCcCC
Confidence            99999988885443

>1sfl_A 3-dehydroquinate dehydratase; 3-dehydroquinase, enzyme turnover, shikimate pathway, lyase; 1.90A {Staphylococcus aureus subsp} SCOP: c.1.10.1 PDB: 1sfj_A*

Probab=95.27  E-value=1.8  Score=40.14  Aligned_cols=197  Identities=11%  Similarity=0.019  Sum_probs=119.3

Q ss_pred             HHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH---hcc-CCcEEEEeCCH-h---------h----HHH
Q 015894          119 VVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ---NVE-GARFPVLTPNL-K---------G----FEA  180 (398)
Q Consensus       119 ~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~---~~~-~~~l~~l~~n~-~---------~----ie~  180 (398)
                      ++.++-++.+.+.|.|.||+-...-..     .+.+.+.+.++   +.. +..+..-.|.. +         .    ++.
T Consensus        17 ~e~~~~~~~~~~~~~D~vElRvD~l~~-----~~~~~v~~~~~~lr~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~   91 (238)
T 1sfl_A           17 EETLIQKINHRIDAIDVLELRIDQFEN-----VTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDSYLNLISD   91 (238)
T ss_dssp             -CHHHHHHHHTTTTCSEEEEECTTSTT-----CCHHHHHHHHHHHC---CCSEEEEECCBGGGTSCBCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhcCCCEEEEEeccccc-----CCHHHHHHHHHHHHHhccCCCEEEEeeccccCCCCCCCHHHHHHHHHH
Confidence            444555666778899999997532111     13455554444   322 33443333421 1         1    355


Q ss_pred             HHHc-CCCEEEEeccC--chHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894          181 AVAA-GAKEVAIFASA--SESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL  257 (398)
Q Consensus       181 a~~~-Gv~~v~i~~~~--Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l  257 (398)
                      +++. +++.|.|-...  .+               +.+.++++.+++.|..+-+..=. |    ....+.+.+....+++
T Consensus        92 ~~~~~~~d~iDvEl~~~~~~---------------~~~~~l~~~~~~~~~kvI~S~Hd-f----~~tp~~~el~~~~~~~  151 (238)
T 1sfl_A           92 LANINGIDMIDIEWQADIDI---------------EKHQRIITHLQQYNKEVIISHHN-F----ESTPPLDELQFIFFKM  151 (238)
T ss_dssp             GGGCTTCCEEEEECCTTSCH---------------HHHHHHHHHHHHTTCEEEEEEEE-S----SCCCCHHHHHHHHHHH
T ss_pred             HHHhCCCCEEEEEccCCCCh---------------HHHHHHHHHHHhcCCEEEEEecC-C----CCCcCHHHHHHHHHHH
Confidence            6666 58999987654  22               23446678888888877532221 1    1222357889999999


Q ss_pred             HhCCCCEEEEccCcCcCCHHHHHHHHHHHHhh--CCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCC
Q 015894          258 YDMGCSEISLGDTIGVGTPGTVIPMLEAVLDA--VPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAK  335 (398)
Q Consensus       258 ~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~--~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~  335 (398)
                      .++|||.+-|+=+.  -++.++..+++...+.  .+..|+-.-  +.-.+|.-.-+.+-..|-...-+++.. ..     
T Consensus       152 ~~~gaDivKia~~a--~~~~D~l~ll~~~~~~~~~~~~P~I~~--~MG~~G~~SRi~~~~~GS~~tf~~l~~-~s-----  221 (238)
T 1sfl_A          152 QKFNPEYVKLAVMP--HNKNDVLNLLQAMSTFSDTMDCKVVGI--SMSKLGLISRTAQGVFGGALTYGCIGE-PQ-----  221 (238)
T ss_dssp             HTTCCSEEEEEECC--SSHHHHHHHHHHHHHHHHHCSSEEEEE--ECTGGGHHHHHTGGGGTBCEEEEBSSC-CS-----
T ss_pred             HHcCCCEEEEEecC--CCHHHHHHHHHHHHHHhhcCCCCEEEE--ECCCCchHHHHHHHHhCCCeeecCCCC-CC-----
Confidence            99999999888764  3478888888766542  233344332  233344556666667788888887742 23     


Q ss_pred             CCCCCccHHHHHHHHH
Q 015894          336 GASGNVATEDVVYMLN  351 (398)
Q Consensus       336 graGNa~lE~vv~~L~  351 (398)
                       ..|+.+.+++...|+
T Consensus       222 -APGQl~~~el~~~l~  236 (238)
T 1sfl_A          222 -APGQIDVTDLKAQVT  236 (238)
T ss_dssp             -STTCCBHHHHHHHHT
T ss_pred             -CCCCCCHHHHHHHHH
Confidence             456999999987764

>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}

Probab=95.23  E-value=0.62  Score=45.17  Aligned_cols=186  Identities=11%  Similarity=0.053  Sum_probs=122.5

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH---hccCCcEEEEe---CCHhhHHHHHHc----
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ---NVEGARFPVLT---PNLKGFEAAVAA----  184 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~---~~~~~~l~~l~---~n~~~ie~a~~~----  184 (398)
                      ....+....++++-.+.+-+.|=-.+...-++.+   .  .+...++   +-.++.+....   .+.+.+..++++    
T Consensus        34 v~n~e~~~Avl~AAee~~sPvIlq~s~g~~~y~g---~--~~~~~~~~~A~~~~VPVaLHlDHg~~~e~i~~ai~~~~~~  108 (306)
T 3pm6_A           34 VYNLEGILAIIRAAEHKRSPAMILLFPWAIQYAD---S--LLVRTAASACRAASVPITLHLDHAQDPEIIKRAADLSRSE  108 (306)
T ss_dssp             CSSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHT---T--HHHHHHHHHHHHCSSCEEEEEEEECCHHHHHHHHHTC---
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhcc---H--HHHHHHHHHHHHCCCCEEEEcCCCCCHHHHHHHHHhhhhc
Confidence            4678888899999999999977654432111111   0  1122222   12344444433   467789999998    


Q ss_pred             ----CCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC---------CCCCHHHHH
Q 015894          185 ----GAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE---------GMVPPSKVA  251 (398)
Q Consensus       185 ----Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~---------~r~~~~~l~  251 (398)
                          |...|.+=.|          ..+.+|+++.-++++++|++.|+.|++.|-..-|.+|.         -.++|+...
T Consensus       109 ~~~~GFtSVMiDgS----------~~p~eENi~~Tk~vv~~ah~~gvsVEaElG~igG~Edgv~~~~~~~~~yT~Peea~  178 (306)
T 3pm6_A          109 THEPGFDSIMVDMS----------HFSKEENLRLTRELVAYCNARGIATEAEPGRIEGGEDGVQDTVDLEGVLTTPEESE  178 (306)
T ss_dssp             ---CCCSEEEECCT----------TSCHHHHHHHHHHHHHHHHTTTCEEEECSSBCCCCBTTBCCCTTCCCBCCCHHHHH
T ss_pred             cCCCCCCEEEEeCC----------CCCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeccccCCccccccccccCCCHHHHH
Confidence                9988877332          13578999999999999999999999877665444432         247898887


Q ss_pred             HHHHHHHhCCCCEEEEccCcC----cCCH---HHHHHHHHHHHhhC-CCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          252 YVSKQLYDMGCSEISLGDTIG----VGTP---GTVIPMLEAVLDAV-PVDKLAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       252 ~~a~~l~~~Gad~I~L~DT~G----~~~P---~~v~~lv~~l~~~~-p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      +++    +.|+|.+  +=++|    .-.|   .==.++++.+++.+ +++||.+|+=  -|..-.....|+..|+.-|+.
T Consensus       179 ~Fv----~TgvD~L--AvaiGt~HG~Yk~~~p~Ld~~~L~~I~~~v~~~vpLVlHGg--SG~p~e~i~~ai~~GV~KiNi  250 (306)
T 3pm6_A          179 EFV----ATGINWL--APAFGNVHGNYGPRGVQLDYERLQRINEAVGERVGLVLHGA--DPFTKEIFEKCIERGVAKVNV  250 (306)
T ss_dssp             HHH----TTTCSEE--CCCSSCCSSCCCTTCCCCCHHHHHHHHHHHTTTSEEEECSC--TTCCHHHHHHHHHTTEEEEEE
T ss_pred             HHH----HcCCCEE--EEEcCccccCcCCCCCccCHHHHHHHHHHhCCCCCEEeeCC--CCCCHHHHHHHHHcCCeEEEe
Confidence            766    4899953  33333    3222   22245567777766 3678888765  467778899999999876543

>2qgq_A Protein TM_1862; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: CXS; 2.00A {Thermotoga maritima MSB8}

Probab=95.20  E-value=0.82  Score=43.58  Aligned_cols=143  Identities=13%  Similarity=0.146  Sum_probs=91.8

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCc---ccCCCCHHHHHHHHHhccCCc-EEEEe--C---CHhhHHHHHHcC
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKW---VPQLADAKDVMAAIQNVEGAR-FPVLT--P---NLKGFEAAVAAG  185 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~---~p~~~D~~~v~~~i~~~~~~~-l~~l~--~---n~~~ie~a~~~G  185 (398)
                      ..+.++.++-++.|.+.|+..|-+.......+   .|...+..++++.+++.++.. +....  +   +.+-++...++|
T Consensus        32 ~r~~e~i~~ei~~l~~~G~~ei~l~g~~~~~yG~~~~~~~~l~~Ll~~l~~~~gi~~ir~~~~~p~~l~~e~l~~l~~~g  111 (304)
T 2qgq_A           32 SRSIEDITREVEDLLKEGKKEIILVAQDTTSYGIDLYRKQALPDLLRRLNSLNGEFWIRVMYLHPDHLTEEIISAMLELD  111 (304)
T ss_dssp             BCCHHHHHHHHHHHHHTTCCEEEEECTTGGGTTHHHHSSCCHHHHHHHHHTSSSSCEEEECCCCGGGCCHHHHHHHHHCT
T ss_pred             eeCHHHHHHHHHHHHHCCCcEEEEEeEcccccCCCCCcHHHHHHHHHHHHhcCCCcEEEEeeeecccCCHHHHHHHHhCC
Confidence            46888889999999999999876642110000   011245677888887766653 22221  2   234577788899


Q ss_pred             --CCEEEEec-cCchHHHhhhcCC--CHHHHHHHHHHHHHHHHh--CCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHH
Q 015894          186 --AKEVAIFA-SASESFSKSNINC--TIEDSLIRYRDVALAARE--LSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLY  258 (398)
Q Consensus       186 --v~~v~i~~-~~Sd~~~~~~~~~--s~~~~l~~~~~~v~~ak~--~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~  258 (398)
                        ++.+.+-+ +.|+--.+. +++  +.+    .+.+.++.+++  .|+.+..+++  +|.|.+   +.+.+.+.++.+.
T Consensus       112 ~~~~~l~i~lqs~s~~vl~~-m~r~~t~e----~~~~~i~~l~~~~~gi~i~~~~I--vG~PgE---t~ed~~~t~~~l~  181 (304)
T 2qgq_A          112 KVVKYFDVPVQHGSDKILKL-MGRTKSSE----ELKKMLSSIRERFPDAVLRTSII--VGFPGE---TEEDFEELKQFVE  181 (304)
T ss_dssp             TBCCEEECCCBCSCHHHHHH-TTCCSCHH----HHHHHHHHHHHHCTTCEEEEEEE--ECCTTC---CHHHHHHHHHHHH
T ss_pred             CCccEEEEecccCCHHHHHH-hCCCCCHH----HHHHHHHHHHhhCCCCEEEEEEE--EeCCCC---CHHHHHHHHHHHH
Confidence              88888855 446654443 443  444    44456677777  6888776666  565644   5788888888888


Q ss_pred             hCCCCEEEE
Q 015894          259 DMGCSEISL  267 (398)
Q Consensus       259 ~~Gad~I~L  267 (398)
                      +.+.+.+.+
T Consensus       182 ~l~~~~v~~  190 (304)
T 2qgq_A          182 EIQFDKLGA  190 (304)
T ss_dssp             HHCCSEEEE
T ss_pred             HcCCCEEEE
Confidence            999886543

>3cu2_A Ribulose-5-phosphate 3-epimerase; YP_718263.1, ribulose-PHOS epimerase family, structural genomics, joint center for STR genomics, JCSG; 1.91A {Haemophilus somnus}

Probab=95.18  E-value=0.066  Score=50.09  Aligned_cols=166  Identities=12%  Similarity=-0.000  Sum_probs=100.7

Q ss_pred             HHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCCH-hhHHHHHHcCCCEEEEeccCchHHH
Q 015894          122 VELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNL-KGFEAAVAAGAKEVAIFASASESFS  200 (398)
Q Consensus       122 ~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n~-~~ie~a~~~Gv~~v~i~~~~Sd~~~  200 (398)
                      .+-++.+.+.|++.+.+...- ..++|.+.--..+.+.+++..+..+-.++.+. .-++.+.++|+|.|.+..-..+   
T Consensus        29 ~~~i~~~~~~gad~lhvDvmD-G~fvpn~t~G~~~v~~lr~~~~~DvhLMv~~p~~~i~~~~~aGAd~itvH~ea~~---  104 (237)
T 3cu2_A           29 NEEVTTLLENQINVLHFDIAD-GQFSSLFTVGAIGIKYFPTHCFKDVHLMVRNQLEVAKAVVANGANLVTLQLEQYH---  104 (237)
T ss_dssp             HHHHHHHHHTTCCEEEEEEEB-SSSSSCBCBCTHHHHTSCTTSEEEEEEECSCHHHHHHHHHHTTCSEEEEETTCTT---
T ss_pred             HHHHHHHHHcCCCEEEEEEec-CccccchhhhHHHHHHHhhhCCCCeEEEEECHHHHHHHHHHcCCCEEEEecCCcc---
Confidence            445788889999987664321 12233332222445555543211334445554 4478999999999877655432   


Q ss_pred             hhhcCCCHHHHHHHHHHHHHHHHhC---------CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----
Q 015894          201 KSNINCTIEDSLIRYRDVALAAREL---------SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL----  267 (398)
Q Consensus       201 ~~~~~~s~~~~l~~~~~~v~~ak~~---------G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L----  267 (398)
                                   ...+.++.+++.         |..+.+.+.     |.   ++.+.+.++.     .++|.|.+    
T Consensus       105 -------------~~~~~i~~i~~~~~~~~~~~~g~~~gv~l~-----p~---Tp~~~l~~~l-----~~~D~vlvMsv~  158 (237)
T 3cu2_A          105 -------------DFALTIEWLAKQKTTYANQVYPVLIGACLC-----PE---TPISELEPYL-----DQIDVIQLLTLD  158 (237)
T ss_dssp             -------------SHHHHHHHHTTCEEEETTEEEECEEEEEEC-----TT---SCGGGGTTTT-----TTCSEEEEESEE
T ss_pred             -------------cHHHHHHHHHhcccccccccCCceEEEEEe-----CC---ChHHHHHHHh-----hcCceeeeeeec
Confidence                         134667888899         888765442     21   2333333332     26887754    


Q ss_pred             ccCcCcCCHHHHHHHHHHHHhhCC----CCeEEEEeCCccchHHHHHHHHHH--hCCCEE
Q 015894          268 GDTIGVGTPGTVIPMLEAVLDAVP----VDKLAVHFHDTYGQALSNILASLQ--MGISTV  321 (398)
Q Consensus       268 ~DT~G~~~P~~v~~lv~~l~~~~p----~~~l~~H~Hnd~GlA~ANalaAl~--aGa~~V  321 (398)
                      +-..|...+....+.++.+++..+    ..+|++    |-|.-..|+-..++  +||+.+
T Consensus       159 pgfggq~f~~~~l~ki~~lr~~~~~~~~~~~I~v----dGGI~~~~~~~~~~~~aGad~~  214 (237)
T 3cu2_A          159 PRNGTKYPSELILDRVIQVEKRLGNRRVEKLINI----DGSMTLELAKYFKQGTHQIDWL  214 (237)
T ss_dssp             TTTTEECCHHHHHHHHHHHHHHHGGGGGGCEEEE----ESSCCHHHHHHHHHSSSCCCCE
T ss_pred             cCcCCeecChhHHHHHHHHHHHHHhcCCCceEEE----ECCcCHHHHHHHHHhCCCCcEE
Confidence            233344445666777777777653    345655    77888899999999  999855

>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A

Probab=95.11  E-value=0.26  Score=51.72  Aligned_cols=190  Identities=12%  Similarity=0.042  Sum_probs=111.2

Q ss_pred             EeCC----CcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh---ccCCcEEEEeC
Q 015894          101 VEVG----PRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN---VEGARFPVLTP  173 (398)
Q Consensus       101 ~D~T----LRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~---~~~~~l~~l~~  173 (398)
                      +.+|    ++||.+.    .+.+..++.++.+.+.|.+.|++|....     .....+++.+.++.   ..++.++.=+.
T Consensus       322 ~N~Tg~dsf~~~~~~----~~~~~a~~~A~~~v~~GAdiIDIgpg~~-----~v~~~ee~~rvv~~i~~~~~vpisIDT~  392 (566)
T 1q7z_A          322 INPAGRKKLWAEMQK----GNEEIVIKEAKTQVEKGAEVLDVNFGIE-----SQIDVRYVEKIVQTLPYVSNVPLSLDIQ  392 (566)
T ss_dssp             ECCTTCHHHHHHHHT----TCCHHHHHHHHHHHHTTCSEEEEECSSG-----GGSCHHHHHHHHHHHHHHTCSCEEEECC
T ss_pred             ecCCCChhHHHHhhc----CCHHHHHHHHHHHHHCCCCEEEECCCCC-----CCCHHHHHHHHHHHHHhhCCceEEEeCC
Confidence            4466    7777764    4568889999999999999999994221     12344555555543   23566666667


Q ss_pred             CHhhHHHHHHc--CCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeec-CCCCCCCC--HH
Q 015894          174 NLKGFEAAVAA--GAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVG-CPVEGMVP--PS  248 (398)
Q Consensus       174 n~~~ie~a~~~--Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg-~~~~~r~~--~~  248 (398)
                      +.+-+++++++  |.+.|.=....              +  +++.++.+.++++|..+.  ++..-+ .|..  ++  .+
T Consensus       393 ~~~v~eaal~~~~G~~iINdis~~--------------~--~~~~~~~~~~~~~g~~vV--~m~~~~~~p~t--~~~~~~  452 (566)
T 1q7z_A          393 NVDLTERALRAYPGRSLFNSAKVD--------------E--EELEMKINLLKKYGGTLI--VLLMGKDVPKS--FEERKE  452 (566)
T ss_dssp             CHHHHHHHHHHCSSCCEEEEEESC--------------H--HHHHHHHHHHHHHCCEEE--EESCSSSCCCS--HHHHHH
T ss_pred             CHHHHHHHHHhcCCCCEEEECCcc--------------h--hhHHHHHHHHHHhCCeEE--EEeCCCCCcCC--HHHHHH
Confidence            78888999998  98876532211              1  334566778889998664  343211 1111  11  35


Q ss_pred             HHHHHHHHHHhCCC-CEEEE---ccCcCcCCHHHHHHHHHHHHhh--CCCCeEEEEeCC-------ccchHHHHHHHHHH
Q 015894          249 KVAYVSKQLYDMGC-SEISL---GDTIGVGTPGTVIPMLEAVLDA--VPVDKLAVHFHD-------TYGQALSNILASLQ  315 (398)
Q Consensus       249 ~l~~~a~~l~~~Ga-d~I~L---~DT~G~~~P~~v~~lv~~l~~~--~p~~~l~~H~Hn-------d~GlA~ANalaAl~  315 (398)
                      ++.+.++.+.++|+ +.|.|   ..++|...  +-.++++.++..  . +.|+-+=..|       +-.+.-.-+..|+.
T Consensus       453 ~l~~~~~~a~~~Gi~~~IilDPg~~~igfgk--~~~~~l~~~~~~~~~-g~p~l~G~Snksf~~~~~~~l~~t~a~~a~~  529 (566)
T 1q7z_A          453 YFEKALKILERHDFSDRVIFDPGVLPLGAEG--KPVEVLKTIEFISSK-GFNTTVGLSNLSFGLPDRSYYNTAFLVLGIS  529 (566)
T ss_dssp             HHHHHHHHHHHTTCGGGEEEECCCCCTTTTC--CHHHHHHHHHHHHHT-TCEECCBGGGGSTTSTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCCCcEEEeCCCCcccCcH--HHHHHHHHHHHHHhC-CCCEEEEeCcccccCCHHHHHHHHHHHHHHH
Confidence            66667778888999 45543   33446666  444455554421  1 2222221211       22233333356788


Q ss_pred             hCCCEEe
Q 015894          316 MGISTVD  322 (398)
Q Consensus       316 aGa~~VD  322 (398)
                      +|++++=
T Consensus       530 ~G~~i~r  536 (566)
T 1q7z_A          530 KGLSSAI  536 (566)
T ss_dssp             TTCCEEE
T ss_pred             cCCCEEE
Confidence            8988663

>2fli_A Ribulose-phosphate 3-epimerase; (beta/alpha)8-barrel, D- xylitol 5-phosphate, isomerase; HET: DX5; 1.80A {Streptococcus pyogenes} SCOP: c.1.2.2

Probab=95.06  E-value=0.38  Score=43.28  Aligned_cols=171  Identities=13%  Similarity=0.121  Sum_probs=94.1

Q ss_pred             HHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEE--EeCCH-hhHHHHHHcCCCEEEEeccC
Q 015894          119 VVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPV--LTPNL-KGFEAAVAAGAKEVAIFASA  195 (398)
Q Consensus       119 ~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~n~-~~ie~a~~~Gv~~v~i~~~~  195 (398)
                      ....+.++.+.++|++.+++...-.+ +.+......+..+.+++..+..+.+  ++.+. +.++.+.++|++.|.+....
T Consensus        16 ~~~~~~~~~~~~~G~~~i~~~~~dg~-~~~~~~~g~~~i~~i~~~~~~~~~v~l~v~d~~~~i~~~~~~gad~v~vh~~~   94 (220)
T 2fli_A           16 ANFASELARIEETDAEYVHIDIMDGQ-FVPNISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTES   94 (220)
T ss_dssp             GGHHHHHHHHHHTTCCEEEEEEEBSS-SSSCBCBCHHHHHHHHTTCCSEEEEEEESSSGGGGHHHHHHHTCSEEEEEGGG
T ss_pred             HHHHHHHHHHHHcCCCEEEEEeecCC-CCCccccCHHHHHHHHHhCCCCEEEEEeecCHHHHHHHHHHcCCCEEEEccCc
Confidence            45567889999999999887642211 0111122134555566443443333  33554 35899999999999886543


Q ss_pred             chHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcC---
Q 015894          196 SESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIG---  272 (398)
Q Consensus       196 Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G---  272 (398)
                      .+                .....++.+++.|..+...+.     +   .++.+.+..+     ..++|.|.+ |+++   
T Consensus        95 ~~----------------~~~~~~~~~~~~g~~i~~~~~-----~---~t~~e~~~~~-----~~~~d~vl~-~~~~~g~  144 (220)
T 2fli_A           95 TR----------------HIHGALQKIKAAGMKAGVVIN-----P---GTPATALEPL-----LDLVDQVLI-MTVNPGF  144 (220)
T ss_dssp             CS----------------CHHHHHHHHHHTTSEEEEEEC-----T---TSCGGGGGGG-----TTTCSEEEE-ESSCTTC
T ss_pred             cc----------------cHHHHHHHHHHcCCcEEEEEc-----C---CCCHHHHHHH-----HhhCCEEEE-EEECCCC
Confidence            22                123455666777877543321     1   1223322222     245786643 4332   


Q ss_pred             --cCCHHHHHHHHHHHHhhCC----CCeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894          273 --VGTPGTVIPMLEAVLDAVP----VDKLAVHFHDTYGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       273 --~~~P~~v~~lv~~l~~~~p----~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S  324 (398)
                        ...+....+.++.+++..+    ..++.+    +-|....|.-.++++|++.|.+.
T Consensus       145 ~g~~~~~~~~~~i~~~~~~~~~~~~~~~i~v----~GGI~~~~~~~~~~~Gad~vvvG  198 (220)
T 2fli_A          145 GGQAFIPECLEKVATVAKWRDEKGLSFDIEV----DGGVDNKTIRACYEAGANVFVAG  198 (220)
T ss_dssp             SSCCCCGGGHHHHHHHHHHHHHTTCCCEEEE----ESSCCTTTHHHHHHHTCCEEEES
T ss_pred             cccccCHHHHHHHHHHHHHHHhcCCCceEEE----ECcCCHHHHHHHHHcCCCEEEEC
Confidence              2222223334555554331    344544    34555578888888999988876

>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*

Probab=95.06  E-value=0.4  Score=44.57  Aligned_cols=189  Identities=13%  Similarity=0.094  Sum_probs=100.5

Q ss_pred             HHHHHHHHhcCCCEEEEecCCCCCcccCC--CCHHHHHHHHHhccCCcEEE-EeC----C-----H-----------hhH
Q 015894          122 VELIKLLVSSGLAVVEATSFVSPKWVPQL--ADAKDVMAAIQNVEGARFPV-LTP----N-----L-----------KGF  178 (398)
Q Consensus       122 ~~ia~~L~~aGv~~IEvG~~~~~~~~p~~--~D~~~v~~~i~~~~~~~l~~-l~~----n-----~-----------~~i  178 (398)
                      .+.++.+.++|++.||+....    .+.+  .+.+++.+.+++ .++++.+ ..+    +     .           +.+
T Consensus        20 ~~~l~~~~~~G~~~vEl~~~~----~~~~~~~~~~~~~~~l~~-~gl~i~~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i   94 (294)
T 3vni_A           20 KYYIEKVAKLGFDILEIAASP----LPFYSDIQINELKACAHG-NGITLTVGHGPSAEQNLSSPDPDIRKNAKAFYTDLL   94 (294)
T ss_dssp             HHHHHHHHHHTCSEEEEESTT----GGGCCHHHHHHHHHHHHH-TTCEEEEEECCCGGGCTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEecCcc----cCCcCHHHHHHHHHHHHH-cCCeEEEeecCCCCcCCCCCCHHHHHHHHHHHHHHH
Confidence            567777889999999998532    1112  122333333332 3566655 222    1     1           124


Q ss_pred             HHHHHcCCCEEEEecc-Cch-HHHhhhcCCCH----HHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH
Q 015894          179 EAAVAAGAKEVAIFAS-ASE-SFSKSNINCTI----EDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAY  252 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~-~Sd-~~~~~~~~~s~----~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~  252 (398)
                      +.|.+.|++.|.+.+. ... .+   .-+.+.    +...+.+.++.++|++.|+.+.  +...-..+...-.+++.+.+
T Consensus        95 ~~a~~lG~~~v~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~--lEn~~~~~~~~~~~~~~~~~  169 (294)
T 3vni_A           95 KRLYKLDVHLIGGALYSYWPIDY---TKTIDKKGDWERSVESVREVAKVAEACGVDFC--LEVLNRFENYLINTAQEGVD  169 (294)
T ss_dssp             HHHHHHTCCEEEESTTSCSSCCT---TSCCCHHHHHHHHHHHHHHHHHHHHHTTCEEE--EECCCTTTCSSCCSHHHHHH
T ss_pred             HHHHHhCCCeeeccccCCCCCcC---CCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEE--EEecCcccCcccCCHHHHHH
Confidence            5677789999985322 110 00   001233    4455666778888999998764  32110001111236677777


Q ss_pred             HHHHHHhCCCCEEE-EccCcCcCCH-HHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCC
Q 015894          253 VSKQLYDMGCSEIS-LGDTIGVGTP-GTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGG  330 (398)
Q Consensus       253 ~a~~l~~~Gad~I~-L~DT~G~~~P-~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGe  330 (398)
                      +++.+   +.+.+. .-||.=...- ....+.++.+.   + --.++|++|...                          
T Consensus       170 l~~~v---~~~~vg~~~D~~h~~~~g~d~~~~l~~~~---~-~i~~vHl~D~~r--------------------------  216 (294)
T 3vni_A          170 FVKQV---DHNNVKVMLDTFHMNIEEDSIGGAIRTAG---S-YLGHLHTGECNR--------------------------  216 (294)
T ss_dssp             HHHHH---CCTTEEEEEEHHHHHHHCSCHHHHHHHHG---G-GEEEEEECCTTS--------------------------
T ss_pred             HHHHc---CCCCEEEEEEhhhhHHcCCCHHHHHHHhh---h-hEeEEEeCCCCC--------------------------
Confidence            66544   433232 3354211111 12333333332   2 247899999521                          


Q ss_pred             CCCCCCCCCCccHHHHHHHHHhCCCC
Q 015894          331 CPYAKGASGNVATEDVVYMLNGLGVR  356 (398)
Q Consensus       331 cp~a~graGNa~lE~vv~~L~~~Gi~  356 (398)
                      +  .| +.|..+.+.++..|++.|++
T Consensus       217 ~--~p-G~G~id~~~~~~~L~~~gy~  239 (294)
T 3vni_A          217 K--VP-GRGRIPWVEIGEALADIGYN  239 (294)
T ss_dssp             C--CT-TSSSCCHHHHHHHHHHTTCC
T ss_pred             C--CC-CCCCcCHHHHHHHHHHhCCC
Confidence            0  12 37899999999999987765

>3nvt_A 3-deoxy-D-arabino-heptulosonate 7-phosphate synth; bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismat listeria monocytogenes EGD-E; 1.95A {Listeria monocytogenes} PDB: 3tfc_A*

Probab=95.04  E-value=0.62  Score=46.55  Aligned_cols=178  Identities=13%  Similarity=0.115  Sum_probs=112.9

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEecCCCCCcccC-CC-CHHHHHHHHHhc---cCCcEEEEeCCHhhHHHHHHcCCCEEEE
Q 015894          117 PAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQ-LA-DAKDVMAAIQNV---EGARFPVLTPNLKGFEAAVAAGAKEVAI  191 (398)
Q Consensus       117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~-~~-D~~~v~~~i~~~---~~~~l~~l~~n~~~ie~a~~~Gv~~v~i  191 (398)
                      +.++-+++++.+.++|.+.|-.+.|- |+..|. +. -.++-+..+++.   .++.+..=......++.+.+. ++.+.|
T Consensus       154 s~e~a~~~a~~~k~aGa~~vk~q~fk-prts~~~f~gl~~egl~~L~~~~~~~Gl~~~te~~d~~~~~~l~~~-vd~lkI  231 (385)
T 3nvt_A          154 SYEQVAAVAESIKAKGLKLIRGGAFK-PRTSPYDFQGLGLEGLKILKRVSDEYGLGVISEIVTPADIEVALDY-VDVIQI  231 (385)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEECBSSC-CCSSTTSCCCCTHHHHHHHHHHHHHHTCEEEEECCSGGGHHHHTTT-CSEEEE
T ss_pred             CHHHHHHHHHHHHHcCCCeEEccccc-CCCChHhhcCCCHHHHHHHHHHHHHcCCEEEEecCCHHHHHHHHhh-CCEEEE
Confidence            78889999999999999999988763 211111 10 012223333322   244444333577788888777 999888


Q ss_pred             eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC-CCHHHHHHHHHHHHhCCCCEEEEccC
Q 015894          192 FASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGM-VPPSKVAYVSKQLYDMGCSEISLGDT  270 (398)
Q Consensus       192 ~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r-~~~~~l~~~a~~l~~~Gad~I~L~DT  270 (398)
                      -....          +.       .+.++++.+.|.+|.  ++       .+. .+++++...++.+.+.|.+.|.|+.-
T Consensus       232 gs~~~----------~n-------~~LL~~~a~~gkPVi--lk-------~G~~~t~~e~~~Ave~i~~~Gn~~i~L~~r  285 (385)
T 3nvt_A          232 GARNM----------QN-------FELLKAAGRVDKPIL--LK-------RGLSATIEEFIGAAEYIMSQGNGKIILCER  285 (385)
T ss_dssp             CGGGT----------TC-------HHHHHHHHTSSSCEE--EE-------CCTTCCHHHHHHHHHHHHTTTCCCEEEEEC
T ss_pred             Ccccc----------cC-------HHHHHHHHccCCcEE--Ee-------cCCCCCHHHHHHHHHHHHHcCCCeEEEEEC
Confidence            54311          11       145567778899886  33       123 68999999999999999987877774


Q ss_pred             --cCcCC-H-HHHH-HHHHHHHhhCCCCeE-EEEeCC--ccchHHHHHHHHHHhCCC--EEee
Q 015894          271 --IGVGT-P-GTVI-PMLEAVLDAVPVDKL-AVHFHD--TYGQALSNILASLQMGIS--TVDS  323 (398)
Q Consensus       271 --~G~~~-P-~~v~-~lv~~l~~~~p~~~l-~~H~Hn--d~GlA~ANalaAl~aGa~--~VD~  323 (398)
                        ..+-+ | ..+. ..+..+++.+. .|+ .=|.|.  +..+...-+++|+.+||+  +|+.
T Consensus       286 G~s~yp~~~~~~ldl~~i~~lk~~~~-lpV~~D~th~~G~r~~v~~~a~AAvA~GA~gl~iE~  347 (385)
T 3nvt_A          286 GIRTYEKATRNTLDISAVPILKKETH-LPVMVDVTHSTGRKDLLLPCAKAALAIEADGVMAEV  347 (385)
T ss_dssp             CBCCSCCSSSSBCCTTHHHHHHHHBS-SCEEEEHHHHHCCGGGHHHHHHHHHHTTCSEEEEEB
T ss_pred             CCCCCCCCCccccCHHHHHHHHHhcC-CCEEEcCCCCCCccchHHHHHHHHHHhCCCEEEEEe
Confidence              32211 2 2221 12555666542 334 447775  355667789999999999  8876

>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2

Probab=95.01  E-value=0.2  Score=46.50  Aligned_cols=164  Identities=12%  Similarity=0.085  Sum_probs=98.5

Q ss_pred             HHHHHHHHHhcCCCEE--EE--ecCCCCCcccCCCCHHHHHHHHHhc-cCCcEEEE--eCCHhh-HHHHHHcCCCEEEEe
Q 015894          121 KVELIKLLVSSGLAVV--EA--TSFVSPKWVPQLADAKDVMAAIQNV-EGARFPVL--TPNLKG-FEAAVAAGAKEVAIF  192 (398)
Q Consensus       121 k~~ia~~L~~aGv~~I--Ev--G~~~~~~~~p~~~D~~~v~~~i~~~-~~~~l~~l--~~n~~~-ie~a~~~Gv~~v~i~  192 (398)
                      -.+-++.+.++|++.+  ++  |.|+     |.+.--..+.+.+|+. |+..+-+.  +.+... ++..++  ++.+.+.
T Consensus        20 l~~~i~~~~~~g~d~iHvDvmDg~fv-----pn~t~G~~~v~~lr~~~p~~~~dvhLmv~dp~~~i~~~~~--Ad~itvH   92 (227)
T 1tqx_A           20 LAEETQRMESLGAEWIHLDVMDMHFV-----PNLSFGPPVINNLKKYTKSIFFDVHLMVEYPEKYVPLLKT--SNQLTFH   92 (227)
T ss_dssp             HHHHHHHHHHTTCSEEEEEEEBSSSS-----SCBCCCHHHHHHHGGGCSSCEEEEEEESSCGGGGGGGCTT--SSEEEEE
T ss_pred             HHHHHHHHHHcCCCEEEEEEEeCCcC-----cchhcCHHHHHHHHHhCCCCcEEEEEEEcCHHHHHHHHHh--CCEEEEe
Confidence            3456677788899974  44  4444     3333223567777754 36655553  344332 333334  7877776


Q ss_pred             ccCchHHHhhhcCCCHHHHHHHHHHHHH---HHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCC-CCEEEE-
Q 015894          193 ASASESFSKSNINCTIEDSLIRYRDVAL---AARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMG-CSEISL-  267 (398)
Q Consensus       193 ~~~Sd~~~~~~~~~s~~~~l~~~~~~v~---~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~G-ad~I~L-  267 (398)
                      .-..+.               .+.+.++   .+|++|.++.+.+.     |.   ++.+.    ++.+.++| +|.|.+ 
T Consensus        93 ~ea~~~---------------~~~~~i~~~~~i~~~G~k~gvaln-----p~---tp~~~----~~~~l~~g~~D~Vlvm  145 (227)
T 1tqx_A           93 FEALNE---------------DTERCIQLAKEIRDNNLWCGISIK-----PK---TDVQK----LVPILDTNLINTVLVM  145 (227)
T ss_dssp             GGGGTT---------------CHHHHHHHHHHHHTTTCEEEEEEC-----TT---SCGGG----GHHHHTTTCCSEEEEE
T ss_pred             ecCCcc---------------CHHHHHHHHHHHHHcCCeEEEEeC-----CC---CcHHH----HHHHhhcCCcCEEEEe
Confidence            544321               1234556   88999999875443     21   23333    33445565 888732 


Q ss_pred             ---ccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894          268 ---GDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD  322 (398)
Q Consensus       268 ---~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD  322 (398)
                         +-..|...+....+.++.+++..++.+|.+    |-|....|+-.++++||+.+=
T Consensus       146 sV~pGf~gq~f~~~~l~ki~~lr~~~~~~~I~V----dGGI~~~ti~~~~~aGAd~~V  199 (227)
T 1tqx_A          146 TVEPGFGGQSFMHDMMGKVSFLRKKYKNLNIQV----DGGLNIETTEISASHGANIIV  199 (227)
T ss_dssp             SSCTTCSSCCCCGGGHHHHHHHHHHCTTCEEEE----ESSCCHHHHHHHHHHTCCEEE
T ss_pred             eeccCCCCcccchHHHHHHHHHHHhccCCeEEE----ECCCCHHHHHHHHHcCCCEEE
Confidence               233354445667777888888776555655    667777899999999999663

>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A

Probab=95.00  E-value=0.75  Score=42.22  Aligned_cols=206  Identities=13%  Similarity=0.070  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEE--eCCHhhHHHHHHcCCCEEEEeccCc
Q 015894          119 VVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVL--TPNLKGFEAAVAAGAKEVAIFASAS  196 (398)
Q Consensus       119 ~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l--~~n~~~ie~a~~~Gv~~v~i~~~~S  196 (398)
                      .+-.++++.+.++|++.|.+--.....  .......+.++.+++..++.+.+.  .++.++++.++++|++.|.+-..  
T Consensus        30 ~d~~~~a~~~~~~Gad~i~v~d~~~~~--~~~~~~~~~i~~i~~~~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~~--  105 (253)
T 1thf_D           30 GDPVELGKFYSEIGIDELVFLDITASV--EKRKTMLELVEKVAEQIDIPFTVGGGIHDFETASELILRGADKVSINTA--  105 (253)
T ss_dssp             TCHHHHHHHHHHTTCCEEEEEESSCSS--SHHHHHHHHHHHHHTTCCSCEEEESSCCSHHHHHHHHHTTCSEEEESHH--
T ss_pred             cCHHHHHHHHHHcCCCEEEEECCchhh--cCCcccHHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCEEEEChH--
Confidence            356789999999999998875322110  000011233344443334555443  25778899999999999977422  


Q ss_pred             hHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC-cEEEEEeeee--c---CCCCCCC--CHHHHHHHHHHHHhCCCCEEEEc
Q 015894          197 ESFSKSNINCTIEDSLIRYRDVALAARELSI-PVRGYLSCVV--G---CPVEGMV--PPSKVAYVSKQLYDMGCSEISLG  268 (398)
Q Consensus       197 d~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~-~v~~~l~~~f--g---~~~~~r~--~~~~l~~~a~~l~~~Gad~I~L~  268 (398)
                                    .+.....+.+..+..|. .+...+..-.  |   ....+..  +.....+.++.+.+.|++.|.+-
T Consensus       106 --------------~l~~p~~~~~~~~~~g~~~i~~~~~~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~~  171 (253)
T 1thf_D          106 --------------AVENPSLITQIAQTFGSQAVVVAIDAKRVDGEFMVFTYSGKKNTGILLRDWVVEVEKRGAGEILLT  171 (253)
T ss_dssp             --------------HHHCTHHHHHHHHHHCGGGEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEEE
T ss_pred             --------------HHhChHHHHHHHHHcCCCcEEEEEEEEccCCcEEEEECCCccccCCCHHHHHHHHHHCCCCEEEEE
Confidence                          11111112222333342 1211122100  0   0001110  00123456677788999988876


Q ss_pred             cC--cCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchH-HHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHH
Q 015894          269 DT--IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQA-LSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATED  345 (398)
Q Consensus       269 DT--~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA-~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~  345 (398)
                      ++  .|...... .++++.+++..+ +|+-.=    -|.. ..++..+.++||+.|=+.-.=++         +....++
T Consensus       172 ~~~~~g~~~g~~-~~~~~~l~~~~~-ipvia~----GGI~~~~d~~~~~~~Gadgv~vGsal~~---------~~~~~~~  236 (253)
T 1thf_D          172 SIDRDGTKSGYD-TEMIRFVRPLTT-LPIIAS----GGAGKMEHFLEAFLAGADAALAASVFHF---------REIDVRE  236 (253)
T ss_dssp             ETTTTTSCSCCC-HHHHHHHGGGCC-SCEEEE----SCCCSHHHHHHHHHTTCSEEEESHHHHT---------TCSCHHH
T ss_pred             eccCCCCCCCCC-HHHHHHHHHhcC-CCEEEE----CCCCCHHHHHHHHHcCChHHHHHHHHHc---------CCCCHHH
Confidence            43  23332221 445666666543 344442    3444 37777778899986643211111         1226889


Q ss_pred             HHHHHHhCCCCC
Q 015894          346 VVYMLNGLGVRT  357 (398)
Q Consensus       346 vv~~L~~~Gi~t  357 (398)
                      .+..|++.|++.
T Consensus       237 ~~~~l~~~g~~~  248 (253)
T 1thf_D          237 LKEYLKKHGVNV  248 (253)
T ss_dssp             HHHHHHHTTCCC
T ss_pred             HHHHHHHcCCcc
Confidence            999998888743

>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*

Probab=94.95  E-value=1  Score=43.29  Aligned_cols=181  Identities=13%  Similarity=0.096  Sum_probs=108.8

Q ss_pred             CHHHHHHHHHHHHhcC----CCEEEEecCCC-CCccc-CCC--CHHHHHHHHHhc---cCCcEEEEeCCHhhHHHHHHcC
Q 015894          117 PAVVKVELIKLLVSSG----LAVVEATSFVS-PKWVP-QLA--DAKDVMAAIQNV---EGARFPVLTPNLKGFEAAVAAG  185 (398)
Q Consensus       117 ~~~~k~~ia~~L~~aG----v~~IEvG~~~~-~~~~p-~~~--D~~~v~~~i~~~---~~~~l~~l~~n~~~ie~a~~~G  185 (398)
                      +.++.+++++.|.++|    +..+=-++|-- |+--| .+.  ..++=++.+++.   .+..+..=......++.+.+. 
T Consensus        32 ~~e~~~~~A~~lk~~~~~~~~~~v~k~~f~KapRTs~~sf~G~g~~~GL~~L~~~~~e~Glp~~Tev~d~~~v~~l~~~-  110 (285)
T 3sz8_A           32 SLDFTLDVCGEYVAVTRKLGIPFVFKASFDKANRSSIHSYRGVGLDEGLKIFAEVKARFGVPVITDVHEAEQAAPVAEI-  110 (285)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCEEEEEESCCTTCSSTTSCCCSCHHHHHHHHHHHHHHHCCCEEEECCSGGGHHHHHTT-
T ss_pred             CHHHHHHHHHHHHHHHHhheeeeEEEeecccCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHh-
Confidence            7888899999998764    66555554431 22222 111  222333444422   244444333567788888787 


Q ss_pred             CCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC-CCHHHHHHHHHHHHhCCCCE
Q 015894          186 AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGM-VPPSKVAYVSKQLYDMGCSE  264 (398)
Q Consensus       186 v~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r-~~~~~l~~~a~~l~~~Gad~  264 (398)
                      ++.+.|-..  +        +...       +..+++.+.|.+|-  +.       .+. .+++++...++.+.+.|.+.
T Consensus       111 vd~lqIgA~--~--------~~n~-------~LLr~va~~gkPVi--lK-------~G~~~t~~ei~~ave~i~~~Gn~~  164 (285)
T 3sz8_A          111 ADVLQVPAF--L--------ARQT-------DLVVAIAKAGKPVN--VK-------KPQFMSPTQLKHVVSKCGEVGNDR  164 (285)
T ss_dssp             CSEEEECGG--G--------TTCH-------HHHHHHHHTSSCEE--EE-------CCTTSCGGGTHHHHHHHHHTTCCC
T ss_pred             CCEEEECcc--c--------cCCH-------HHHHHHHccCCcEE--Ee-------CCCCCCHHHHHHHHHHHHHcCCCc
Confidence            999888532  1        1111       23445556788875  33       122 47888888999999999988


Q ss_pred             EEEccCcCcC-CHH---HHHHHHHHHHhhCCCCeEEE-EeCCc----------cc---hHHHHHHHHHHhCCC--EEeec
Q 015894          265 ISLGDTIGVG-TPG---TVIPMLEAVLDAVPVDKLAV-HFHDT----------YG---QALSNILASLQMGIS--TVDSS  324 (398)
Q Consensus       265 I~L~DT~G~~-~P~---~v~~lv~~l~~~~p~~~l~~-H~Hnd----------~G---lA~ANalaAl~aGa~--~VD~S  324 (398)
                      |.|+.-.-.. .+.   ++ ..+..+++.+|+.|+.+ ..|-.          .|   +...-++||+.+||+  +|+.=
T Consensus       165 i~L~erg~~y~~~~~~vdl-~~i~~lk~~~~~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GA~gl~IE~H  243 (285)
T 3sz8_A          165 VMLCERGSSFGYDNLVVDM-LGFRQMAETTGGCPVIFDVTHSLQCRDPLGDASGGRRRQVLDLARAGIAVGIAGLFLEAH  243 (285)
T ss_dssp             EEEEECCEECSSSCEECCT-THHHHHHHHTTSCCEEEETTTTCC---------------HHHHHHHHHHHCCSEEEEEEE
T ss_pred             EEEEeCCCCCCCCcCccCH-HHHHHHHHhCCCCCEEEeCCCccccCCCcCCCCCCchhhHHHHHHHHHHhCCCEEEEEec
Confidence            8887643322 111   12 23566788887678988 77752          23   347778999999999  77654


Q ss_pred             c
Q 015894          325 V  325 (398)
Q Consensus       325 v  325 (398)
                      .
T Consensus       244 ~  244 (285)
T 3sz8_A          244 P  244 (285)
T ss_dssp             S
T ss_pred             c
Confidence            3

>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A

Probab=94.84  E-value=0.76  Score=42.05  Aligned_cols=173  Identities=16%  Similarity=0.110  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHhcCCCEEEEe----cCCCCCcccCCCCHHHHHHHHHhccCCcEEEE--eCCHhhHHHHHHcCCCEEEEec
Q 015894          120 VKVELIKLLVSSGLAVVEAT----SFVSPKWVPQLADAKDVMAAIQNVEGARFPVL--TPNLKGFEAAVAAGAKEVAIFA  193 (398)
Q Consensus       120 ~k~~ia~~L~~aGv~~IEvG----~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l--~~n~~~ie~a~~~Gv~~v~i~~  193 (398)
                      +-.++++.+.+.|++.|.+-    .+..     .. .. +.++.+++..+..+.+-  +++.++++.++++|++.|.+-.
T Consensus        33 d~~~~a~~~~~~Gad~i~v~~~d~~~~~-----~~-~~-~~i~~i~~~~~ipv~v~ggI~~~~~~~~~l~~Gad~V~lg~  105 (244)
T 1vzw_A           33 SPLEAALAWQRSGAEWLHLVDLDAAFGT-----GD-NR-ALIAEVAQAMDIKVELSGGIRDDDTLAAALATGCTRVNLGT  105 (244)
T ss_dssp             CHHHHHHHHHHTTCSEEEEEEHHHHHTS-----CC-CH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred             CHHHHHHHHHHcCCCEEEEecCchhhcC-----CC-hH-HHHHHHHHhcCCcEEEECCcCCHHHHHHHHHcCCCEEEECc
Confidence            56788999999999999883    3321     11 22 45555554445555442  3677889999999999988742


Q ss_pred             cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeec-CCCCC--CCCHHHHHHHHHHHHhCCCCEEEEccC
Q 015894          194 SASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVG-CPVEG--MVPPSKVAYVSKQLYDMGCSEISLGDT  270 (398)
Q Consensus       194 ~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg-~~~~~--r~~~~~l~~~a~~l~~~Gad~I~L~DT  270 (398)
                      .                .+.+...+.+..+++|..+...+..-.| -...+  ..+. ...+.++.+.+.|++.|.+-+.
T Consensus       106 ~----------------~l~~p~~~~~~~~~~g~~~~~~l~~~~g~v~~~g~~~~~~-~~~e~~~~~~~~G~~~i~~~~~  168 (244)
T 1vzw_A          106 A----------------ALETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGG-DLYETLDRLNKEGCARYVVTDI  168 (244)
T ss_dssp             H----------------HHHCHHHHHHHHHHHGGGEEEEEEEETTEECCSSSCCCCC-BHHHHHHHHHHTTCCCEEEEEC
T ss_pred             h----------------HhhCHHHHHHHHHHcCCcEEEEEEccCCEEEEcCcccCCC-CHHHHHHHHHhCCCCEEEEecc
Confidence            2                1222222333444555444333332100 00011  1111 3455677788899998887653


Q ss_pred             c--CcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHH-HHHHHHHHh---CCCEEe
Q 015894          271 I--GVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQAL-SNILASLQM---GISTVD  322 (398)
Q Consensus       271 ~--G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~-ANalaAl~a---Ga~~VD  322 (398)
                      .  |..... -.++++.+++... +|+..    +-|... .++..++++   ||+.|-
T Consensus       169 ~~~~~~~g~-~~~~~~~i~~~~~-ipvia----~GGI~~~~d~~~~~~~~~~Gadgv~  220 (244)
T 1vzw_A          169 AKDGTLQGP-NLELLKNVCAATD-RPVVA----SGGVSSLDDLRAIAGLVPAGVEGAI  220 (244)
T ss_dssp             -------CC-CHHHHHHHHHTCS-SCEEE----ESCCCSHHHHHHHHTTGGGTEEEEE
T ss_pred             CcccccCCC-CHHHHHHHHHhcC-CCEEE----ECCCCCHHHHHHHHhhccCCCceee
Confidence            2  211111 2355666666543 34444    345553 777777788   877543

>3cqj_A L-ribulose-5-phosphate 3-epimerase ULAE; TIM-barrel, isomerase, phosphate-binding motif; 2.04A {Escherichia coli} PDB: 3cqi_A 3cqh_A 3cqk_A

Probab=94.67  E-value=0.74  Score=42.86  Aligned_cols=226  Identities=14%  Similarity=0.006  Sum_probs=110.8

Q ss_pred             CCCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcc-cCCCCHHHHHHHHHhccCCcEEEE
Q 015894           93 RVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWV-PQLADAKDVMAAIQNVEGARFPVL  171 (398)
Q Consensus        93 ~~p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~-p~~~D~~~v~~~i~~~~~~~l~~l  171 (398)
                      ++|-++-+..-|+|+.       ++.+   +.++.+.++|++.||+.......+. +.--+.++ .+.++          
T Consensus        14 ~~~~~~gi~~~~~~~~-------~~~~---~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~-~~~~~----------   72 (295)
T 3cqj_A           14 SKQIPLGIYEKALPAG-------ECWL---ERLQLAKTLGFDFVEMSVDETDERLSRLDWSREQ-RLALV----------   72 (295)
T ss_dssp             --CCCEEEEGGGSCCC-------SCHH---HHHHHHHHTTCSEEEEECCSSHHHHGGGGCCHHH-HHHHH----------
T ss_pred             cccccceeeeecCCCC-------CCHH---HHHHHHHhcCCCEEEEecCCcccccCcccCCHHH-HHHHH----------
Confidence            3455677777777742       3344   4566677899999999864321000 00001111 11111          


Q ss_pred             eCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCC----CHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCH
Q 015894          172 TPNLKGFEAAVAAGAKEVAIFASASESFSKSNINC----TIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPP  247 (398)
Q Consensus       172 ~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~----s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~  247 (398)
                             +.+.+.|+....+..+.   +...++..    .+++.++.+++.++.|+++|.+..+ +. .+ .+.......
T Consensus        73 -------~~l~~~gl~i~~~~~~~---~~~~~l~~~d~~~r~~~~~~~~~~i~~A~~lG~~~v~-~~-~~-~~~~~~~~~  139 (295)
T 3cqj_A           73 -------NAIVETGVRVPSMCLSA---HRRFPLGSEDDAVRAQGLEIMRKAIQFAQDVGIRVIQ-LA-GY-DVYYQEANN  139 (295)
T ss_dssp             -------HHHHHHCCEEEEEEEGG---GGTSCTTCSSHHHHHHHHHHHHHHHHHHHHHTCCEEE-EC-CC-SCSSSCCCH
T ss_pred             -------HHHHHcCCeEEEEecCc---ccCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEE-EC-CC-CCCcCcCHH
Confidence                   12334566544443221   10011111    2456788899999999999997642 21 11 110111122


Q ss_pred             -------HHHHHHHHHHHhCCCCEEEEccCcC--cCCHHHHHHHHHHHHhhCCCCeEEE---EeCCccchHHHHHHHHHH
Q 015894          248 -------SKVAYVSKQLYDMGCSEISLGDTIG--VGTPGTVIPMLEAVLDAVPVDKLAV---HFHDTYGQALSNILASLQ  315 (398)
Q Consensus       248 -------~~l~~~a~~l~~~Gad~I~L~DT~G--~~~P~~v~~lv~~l~~~~p~~~l~~---H~Hnd~GlA~ANalaAl~  315 (398)
                             +.+.++++.+.+.|+. |.+--..+  ..+|.++.++++.+.  .|.+.+.+   |.+.. |.-....+..+.
T Consensus       140 ~~~~~~~~~l~~l~~~a~~~Gv~-l~lEn~~~~~~~~~~~~~~l~~~v~--~~~vg~~~D~~h~~~~-g~d~~~~l~~~~  215 (295)
T 3cqj_A          140 ETRRRFRDGLKESVEMASRAQVT-LAMEIMDYPLMNSISKALGYAHYLN--NPWFQLYPDIGNLSAW-DNDVQMELQAGI  215 (295)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCE-EEEECCSSGGGCSHHHHHHHHHHHC--CTTEEEECBHHHHHSS-SCCHHHHHHHTG
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCE-EEEeeCCCcccCCHHHHHHHHHhcC--CCCeEEEeccchHhhc-CCCHHHHHHHhc
Confidence                   2344555566667875 44433333  457787777777663  24322322   33221 222233333321


Q ss_pred             hCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCC
Q 015894          316 MGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVR  356 (398)
Q Consensus       316 aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~  356 (398)
                      -=+..|+..=.--|..-..+-+.|..+.+.++..|++.|++
T Consensus       216 ~~i~~vHl~D~~~g~~~~~p~G~G~id~~~~~~~L~~~gy~  256 (295)
T 3cqj_A          216 GHIVAVHVKDTKPGVFKNVPFGEGVVDFERCFETLKQSGYC  256 (295)
T ss_dssp             GGBCCEEECEEETTEEEEECTTSSSCCHHHHHHHHHHTTCC
T ss_pred             cceEEEEeecCCCCccCCcCCCCCccCHHHHHHHHHHCCCc
Confidence            12445554432112100112136899999999999987764

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=94.67  E-value=3.1  Score=39.51  Aligned_cols=188  Identities=10%  Similarity=0.077  Sum_probs=105.5

Q ss_pred             HHHHHHHHhcCCCEEEEecCCC-CCc---ccC---------------CCCHHHHHHHHHhc-----cCCcEEE-E-eCCH
Q 015894          122 VELIKLLVSSGLAVVEATSFVS-PKW---VPQ---------------LADAKDVMAAIQNV-----EGARFPV-L-TPNL  175 (398)
Q Consensus       122 ~~ia~~L~~aGv~~IEvG~~~~-~~~---~p~---------------~~D~~~v~~~i~~~-----~~~~l~~-l-~~n~  175 (398)
                      .+..+.+.+.|+-.|++++... +..   -|.               ....+.+++.++..     ++..+.+ + ..+.
T Consensus        26 ~~~~~~~~~~G~g~i~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~~g~~~~~~~~~~~~~~~~~~~p~~~~i~g~~~  105 (311)
T 1jub_A           26 IEDLEELKASQAGAYITKSSTLEKREGNPLPRYVDLELGSINSMGLPNLGFDYYLDYVLKNQKENAQEGPIFFSIAGMSA  105 (311)
T ss_dssp             HHHHHHHHHSSCSCCBCCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHHHHHHHHHHHTCSSSCCEEEECCSSH
T ss_pred             HHHHHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCCccHHHHHHHHHHHHHhcCCCCCEEEEcCCCCH
Confidence            3566778999999999875321 100   010               01134444444421     1333222 2 2444


Q ss_pred             hh----HHHHHHcCCC-EEEEeccCchHH-HhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecCCCCCCCCHH
Q 015894          176 KG----FEAAVAAGAK-EVAIFASASESF-SKSNINCTIEDSLIRYRDVALAAREL-SIPVRGYLSCVVGCPVEGMVPPS  248 (398)
Q Consensus       176 ~~----ie~a~~~Gv~-~v~i~~~~Sd~~-~~~~~~~s~~~~l~~~~~~v~~ak~~-G~~v~~~l~~~fg~~~~~r~~~~  248 (398)
                      ++    ++++.+.|+| .|.+-++ |+.. ....++.+.+    .+.++++.+|+. +++|.+-+.     ++   .+.+
T Consensus       106 ~~~~~~a~~~~~~g~d~~iein~~-~P~~~g~~~~g~~~e----~~~~iv~~vr~~~~~Pv~vKi~-----~~---~~~~  172 (311)
T 1jub_A          106 AENIAMLKKIQESDFSGITELNLS-CPNVPGEPQLAYDFE----ATEKLLKEVFTFFTKPLGVKLP-----PY---FDLV  172 (311)
T ss_dssp             HHHHHHHHHHHHSCCCSEEEEESC-CCCSSSCCCGGGCHH----HHHHHHHHHTTTCCSCEEEEEC-----CC---CSHH
T ss_pred             HHHHHHHHHHHhcCCCeEEEEecc-CCCCCCcccccCCHH----HHHHHHHHHHHhcCCCEEEEEC-----CC---CCHH
Confidence            44    4555678999 7877543 1111 1112233443    345666777665 666654332     22   3677


Q ss_pred             HHHHHHHHHHhCCCCEEEEccCcC----------------------cCCH---HHHHHHHHHHHhhCC-CCeEEEEeCCc
Q 015894          249 KVAYVSKQLYDMGCSEISLGDTIG----------------------VGTP---GTVIPMLEAVLDAVP-VDKLAVHFHDT  302 (398)
Q Consensus       249 ~l~~~a~~l~~~Gad~I~L~DT~G----------------------~~~P---~~v~~lv~~l~~~~p-~~~l~~H~Hnd  302 (398)
                      .+.++++.+.++|+|.|.+.++.+                      +..|   ....+++..+++.++ .+||-.=+--.
T Consensus       173 ~~~~~a~~~~~~G~d~i~v~~~~~~g~~i~~~~~~~~~~~~~~~gG~sg~~~~~~~~~~i~~v~~~~~~~ipvi~~GGI~  252 (311)
T 1jub_A          173 HFDIMAEILNQFPLTYVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIKPTALANVRAFYTRLKPEIQIIGTGGIE  252 (311)
T ss_dssp             HHHHHHHHHTTSCCCEEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGHHHHHHHHHHHHTTSCTTSEEEEESSCC
T ss_pred             HHHHHHHHHHHcCCcEEEecCCCCcCceeccCCCCcccccCCCCCccccccccHHHHHHHHHHHHhcCCCCCEEEECCCC
Confidence            888899999999999999988752                      1011   123467888888774 56665544332


Q ss_pred             cchHHHHHHHHHHhCCCEEeecc
Q 015894          303 YGQALSNILASLQMGISTVDSSV  325 (398)
Q Consensus       303 ~GlA~ANalaAl~aGa~~VD~Sv  325 (398)
                      .+   ..+..++.+||+.|-..-
T Consensus       253 ~~---~da~~~l~~GAd~V~vg~  272 (311)
T 1jub_A          253 TG---QDAFEHLLCGATMLQIGT  272 (311)
T ss_dssp             SH---HHHHHHHHHTCSEEEECH
T ss_pred             CH---HHHHHHHHcCCCEEEEch
Confidence            22   455666778999875543

>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}

Probab=94.64  E-value=2  Score=39.06  Aligned_cols=199  Identities=11%  Similarity=0.030  Sum_probs=106.8

Q ss_pred             HHHHHHHHhcCCCEEEEecCCCCCcccCCCCH---HHHHHHHHhccCCcEEEEeC----CH----hhHHHHHHcCCCEEE
Q 015894          122 VELIKLLVSSGLAVVEATSFVSPKWVPQLADA---KDVMAAIQNVEGARFPVLTP----NL----KGFEAAVAAGAKEVA  190 (398)
Q Consensus       122 ~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~---~~v~~~i~~~~~~~l~~l~~----n~----~~ie~a~~~Gv~~v~  190 (398)
                      .+.++.+.++|++.||+....-    |.-.+.   +++.+.+++ .+.++.++..    ..    +.++.|.+.|++.|.
T Consensus        33 ~~~l~~~~~~G~~~vEl~~~~~----~~~~~~~~~~~~~~~l~~-~gl~i~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~  107 (257)
T 3lmz_A           33 DTTLKTLERLDIHYLCIKDFHL----PLNSTDEQIRAFHDKCAA-HKVTGYAVGPIYMKSEEEIDRAFDYAKRVGVKLIV  107 (257)
T ss_dssp             HHHHHHHHHTTCCEEEECTTTS----CTTCCHHHHHHHHHHHHH-TTCEEEEEEEEEECSHHHHHHHHHHHHHHTCSEEE
T ss_pred             HHHHHHHHHhCCCEEEEecccC----CCCCCHHHHHHHHHHHHH-cCCeEEEEeccccCCHHHHHHHHHHHHHhCCCEEE
Confidence            4677888899999999985421    111123   233333332 3566655442    22    346777889999998


Q ss_pred             EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCC-CCCCCCHHHHHHHHHHHHhCCCCEEEEcc
Q 015894          191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCP-VEGMVPPSKVAYVSKQLYDMGCSEISLGD  269 (398)
Q Consensus       191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~-~~~r~~~~~l~~~a~~l~~~Gad~I~L~D  269 (398)
                      +...                 .+.+.++.++|++.|+.+.  +...  .+ ...-.+++.+.++++   +.+...=..-|
T Consensus       108 ~~p~-----------------~~~l~~l~~~a~~~gv~l~--lEn~--~~~~~~~~~~~~~~~ll~---~~~p~vg~~~D  163 (257)
T 3lmz_A          108 GVPN-----------------YELLPYVDKKVKEYDFHYA--IHLH--GPDIKTYPDATDVWVHTK---DLDPRIGMCLD  163 (257)
T ss_dssp             EEEC-----------------GGGHHHHHHHHHHHTCEEE--EECC--CTTCSSSCSHHHHHHHHT---TSCTTEEEEEE
T ss_pred             ecCC-----------------HHHHHHHHHHHHHcCCEEE--EecC--CCcccccCCHHHHHHHHH---hCCCCccEEEc
Confidence            7532                 1234566788899998765  2211  11 111235666666654   22333323345


Q ss_pred             CcCcCCH-HHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHH
Q 015894          270 TIGVGTP-GTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVY  348 (398)
Q Consensus       270 T~G~~~P-~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~  348 (398)
                      +.=...- .+..+.++.+.   + --.++|++|..+-           +         +-+.  +.+-+.|..+...++.
T Consensus       164 ~~h~~~~g~d~~~~l~~~~---~-~i~~vHl~D~~~~-----------~---------~~~~--~~~~G~G~id~~~~~~  217 (257)
T 3lmz_A          164 VGHDLRNGCDPVADLKKYH---T-RVFDMHIKDVTDS-----------S---------KAGV--GIEIGRGKIDFPALIR  217 (257)
T ss_dssp             HHHHHHTTCCHHHHHHHHG---G-GEEEEEECEESCS-----------S---------TTCC--EECTTSSSCCHHHHHH
T ss_pred             hhhHHHcCCCHHHHHHHhh---c-ceeEEeecccccc-----------c---------CCCC--ccccCCCccCHHHHHH
Confidence            4321110 11233333333   2 2478999998761           0         0011  1111368999999999


Q ss_pred             HHHhCCCCCc----c------ChHHHHHHHHHHHHHh
Q 015894          349 MLNGLGVRTN----V------DIRKLMIAGDFICKHL  375 (398)
Q Consensus       349 ~L~~~Gi~t~----i------Dl~~L~~~~~~v~~~~  375 (398)
                      .|++.|++--    +      ..+.+.+..+++.+.+
T Consensus       218 ~L~~~gy~g~~~lE~~~~~~~~~~~~~~s~~~l~~~l  254 (257)
T 3lmz_A          218 MMREVNYTGMCSLEYEKDMKDPFLGIAESIGYFKAVS  254 (257)
T ss_dssp             HHHHTTCCSEEEECCCSSTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCceEEEEecCCcCCHHHHHHHHHHHHHHHh
Confidence            9998766411    1      2345555555555543

>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*

Probab=94.64  E-value=1  Score=43.30  Aligned_cols=136  Identities=15%  Similarity=0.145  Sum_probs=84.6

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCC---H-hhHHHHHHcCCCEEE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPN---L-KGFEAAVAAGAKEVA  190 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n---~-~~ie~a~~~Gv~~v~  190 (398)
                      .++.++..++++.+.+.|+..|-++. ..|-.   ..|..++++.+++.+...-..+..|   . +-++...++|++.|.
T Consensus        49 ~ls~e~i~~~i~~~~~~g~~~i~~tG-GEPll---~~~l~~li~~~~~~~~~~~i~i~TNG~ll~~~~~~L~~~g~~~v~  124 (340)
T 1tv8_A           49 LLTFDEMARIAKVYAELGVKKIRITG-GEPLM---RRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRIN  124 (340)
T ss_dssp             SCCHHHHHHHHHHHHHTTCCEEEEES-SCGGG---STTHHHHHHHHTTCTTCCEEEEEECSTTHHHHHHHHHHHTCCEEE
T ss_pred             CCCHHHHHHHHHHHHHCCCCEEEEeC-CCccc---hhhHHHHHHHHHhCCCCCeEEEEeCccchHHHHHHHHHCCCCEEE
Confidence            57899999999999999999888753 12211   1245566666665544322333332   2 345667789999999


Q ss_pred             EeccC-ch-HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 015894          191 IFASA-SE-SFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCS  263 (398)
Q Consensus       191 i~~~~-Sd-~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad  263 (398)
                      |.+.. ++ .|.+.. +..  ..++.+.+.++.+++.|+.|.++..  + .+.   .+.+.+.++++.+.+.|++
T Consensus       125 iSld~~~~~~~~~i~-~~~--~~~~~v~~~i~~l~~~g~~v~i~~v--v-~~g---~n~~ei~~~~~~~~~~g~~  190 (340)
T 1tv8_A          125 VSLDAIDDTLFQSIN-NRN--IKATTILEQIDYATSIGLNVKVNVV--I-QKG---INDDQIIPMLEYFKDKHIE  190 (340)
T ss_dssp             EECCCSSHHHHHHHH-SSC--CCHHHHHHHHHHHHHTTCEEEEEEE--E-CTT---TTGGGHHHHHHHHHHTTCC
T ss_pred             EecCCCCHHHHHHhh-CCC--CCHHHHHHHHHHHHHCCCCEEEEEE--E-eCC---CCHHHHHHHHHHHHhcCCe
Confidence            97654 33 332221 211  0245555667888889996654433  3 121   2456788888889999987

>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}

Probab=94.50  E-value=1.1  Score=44.17  Aligned_cols=133  Identities=11%  Similarity=0.116  Sum_probs=91.0

Q ss_pred             CCcEEEEeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC
Q 015894          165 GARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGM  244 (398)
Q Consensus       165 ~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r  244 (398)
                      ++.+..=......++...+.|++.+.|...  +.        +   .+    ..++++-+.|.+|-  |+       .+.
T Consensus        91 Gi~~~st~fD~~svd~l~~~~v~~~KI~S~--~~--------~---N~----pLL~~va~~gKPvi--Ls-------tGm  144 (350)
T 3g8r_A           91 GFKAICTPFDEESVDLIEAHGIEIIKIASC--SF--------T---DW----PLLERIARSDKPVV--AS-------TAG  144 (350)
T ss_dssp             TCEEEEEECSHHHHHHHHHTTCCEEEECSS--ST--------T---CH----HHHHHHHTSCSCEE--EE-------CTT
T ss_pred             CCcEEeccCCHHHHHHHHHcCCCEEEECcc--cc--------c---CH----HHHHHHHhhCCcEE--EE-------CCC
Confidence            444444445778888888999999998532  11        1   11    34556667899875  44       234


Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEE--ccCcCcCCHHHHHH--HHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCE
Q 015894          245 VPPSKVAYVSKQLYDMGCSEISL--GDTIGVGTPGTVIP--MLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGIST  320 (398)
Q Consensus       245 ~~~~~l~~~a~~l~~~Gad~I~L--~DT~G~~~P~~v~~--lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~  320 (398)
                      .+.+++...++.+.+.|.+ |.|  |= .++=+|..-.+  .|..+++.+|..++++=-|-.-+ ..+-+++|+.+||++
T Consensus       145 stl~Ei~~Ave~i~~~g~~-viLlhC~-s~YPt~~~~~nL~aI~~Lk~~fp~lpVG~SdHt~g~-~~~~~~AAvAlGA~v  221 (350)
T 3g8r_A          145 ARREDIDKVVSFMLHRGKD-LTIMHCV-AEYPTPDDHLHLARIKTLRQQYAGVRIGYSTHEDPD-LMEPIMLAVAQGATV  221 (350)
T ss_dssp             CCHHHHHHHHHHHHTTTCC-EEEEECC-CCSSCCGGGCCTTHHHHHHHHCTTSEEEEEECCCSS-CCHHHHHHHHTTCCE
T ss_pred             CCHHHHHHHHHHHHHcCCC-EEEEecC-CCCCCCcccCCHHHHHHHHHHCCCCCEEcCCCCCCC-ccHHHHHHHHcCCCE
Confidence            6899999999999888876 566  64 45555544333  57788899988899997787632 134568999999998


Q ss_pred             Eee--ccc
Q 015894          321 VDS--SVS  326 (398)
Q Consensus       321 VD~--Sv~  326 (398)
                      |+.  |+.
T Consensus       222 IEkH~tld  229 (350)
T 3g8r_A          222 FEKHVGLP  229 (350)
T ss_dssp             EEEEBCCC
T ss_pred             EEEecCcc
Confidence            854  554

>2q02_A Putative cytoplasmic protein; structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; 2.40A {Salmonella typhimurium LT2} SCOP: c.1.15.4

Probab=94.48  E-value=2.7  Score=38.11  Aligned_cols=199  Identities=13%  Similarity=0.085  Sum_probs=104.1

Q ss_pred             HHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe---C-C----------HhhHHHHHHcCCC
Q 015894          122 VELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT---P-N----------LKGFEAAVAAGAK  187 (398)
Q Consensus       122 ~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~---~-n----------~~~ie~a~~~Gv~  187 (398)
                      .+.++.+.++|++.||+.......+...-.+.+++.+.++. .+.++.++.   + +          .+-++.|.+.|++
T Consensus        22 ~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~-~gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~~  100 (272)
T 2q02_A           22 EAFFRLVKRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEK-YGLEIVTINAVYPFNQLTEEVVKKTEGLLRDAQGVGAR  100 (272)
T ss_dssp             HHHHHHHHHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHH-TTCEEEEEEEETTTTSCCHHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHcCCCEEEeeccccccccccccCHHHHHHHHHH-cCCeEEechhhhccCCcHHHHHHHHHHHHHHHHHhCCC
Confidence            45566778899999999852211011012355666655553 355554432   1 1          1235667778999


Q ss_pred             EEEEeccCchHHHhhhcCCCHHHH-HHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE-
Q 015894          188 EVAIFASASESFSKSNINCTIEDS-LIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEI-  265 (398)
Q Consensus       188 ~v~i~~~~Sd~~~~~~~~~s~~~~-l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I-  265 (398)
                      .|.+......       ....+.. .+.+.++.++|++.|+.+.  +... +.+...-.+++.+.++++.+   + +.+ 
T Consensus       101 ~v~~~~g~~~-------~~~~~~~~~~~l~~l~~~a~~~gv~l~--~E~~-~~~~~~~~~~~~~~~l~~~v---~-~~~g  166 (272)
T 2q02_A          101 ALVLCPLNDG-------TIVPPEVTVEAIKRLSDLFARYDIQGL--VEPL-GFRVSSLRSAVWAQQLIREA---G-SPFK  166 (272)
T ss_dssp             EEEECCCCSS-------BCCCHHHHHHHHHHHHHHHHTTTCEEE--ECCC-CSTTCSCCCHHHHHHHHHHH---T-CCCE
T ss_pred             EEEEccCCCc-------hhHHHHHHHHHHHHHHHHHHHcCCEEE--EEec-CCCcccccCHHHHHHHHHHh---C-cCeE
Confidence            8887533211       0234566 7888888999999998754  2211 00111224567776666544   3 322 


Q ss_pred             EEccCcCcCC--HHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCC-Ccc
Q 015894          266 SLGDTIGVGT--PGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASG-NVA  342 (398)
Q Consensus       266 ~L~DT~G~~~--P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graG-Na~  342 (398)
                      ..-||.=...  -.. .+.+..++   .+--.++|+||..+-...       .+.  -|.-..       .+| .| +.+
T Consensus       167 ~~~D~~h~~~~~~~~-~~~~~~l~---~~~i~~vH~~D~~~~~~~-------~~~--~~~~~~-------~~G-~G~~id  225 (272)
T 2q02_A          167 VLLDTFHHHLYEEAE-KEFASRID---ISAIGLVHLSGVEDTRPT-------EAL--ADEQRI-------MLS-EKDVMQ  225 (272)
T ss_dssp             EEEEHHHHHHCTTHH-HHHHHHCC---GGGEEEEEECBCCCCSCG-------GGC--CGGGCB-------CCC-TTCSSC
T ss_pred             EEEEchHhhccCCCc-hhhhhhCC---HhHEEEEEeCCCcCCCCc-------hhc--cccccc-------cCC-CCCccc
Confidence            1236532211  011 13344332   233478888886432100       000  010001       122 44 799


Q ss_pred             HHHHHHHHHhCCCC
Q 015894          343 TEDVVYMLNGLGVR  356 (398)
Q Consensus       343 lE~vv~~L~~~Gi~  356 (398)
                      ...++..|++.|++
T Consensus       226 ~~~~~~~L~~~gy~  239 (272)
T 2q02_A          226 NYQQVQRLENMGYR  239 (272)
T ss_dssp             HHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhcCCC
Confidence            99999999987775

>2qul_A D-tagatose 3-epimerase; beta/alpha barrel, isomerase; 1.79A {Pseudomonas cichorii} PDB: 2ou4_A 2qum_A* 2qun_A*

Probab=94.48  E-value=1.3  Score=40.65  Aligned_cols=195  Identities=12%  Similarity=0.088  Sum_probs=97.8

Q ss_pred             HHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe--C---C-----H-----------hhHHH
Q 015894          122 VELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT--P---N-----L-----------KGFEA  180 (398)
Q Consensus       122 ~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~---n-----~-----------~~ie~  180 (398)
                      .+.++.+.++|++.||+.......+.+  .+.+++.+.++. .++++.++.  +   +     .           +.++.
T Consensus        20 ~~~l~~~~~~G~~~vEl~~~~~~~~~~--~~~~~~~~~l~~-~gl~~~~~~~~~~~~~l~~~d~~~r~~~~~~~~~~i~~   96 (290)
T 2qul_A           20 PATAKRIAGLGFDLMEISLGEFHNLSD--AKKRELKAVADD-LGLTVMCCIGLKSEYDFASPDKSVRDAGTEYVKRLLDD   96 (290)
T ss_dssp             HHHHHHHHHTTCSEEEEESTTGGGSCH--HHHHHHHHHHHH-HTCEEEEEEEECGGGCTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCEEEEecCCccccch--hhHHHHHHHHHH-cCCceEEecCCCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            456677778999999998643111000  123333333332 245554432  1   1     1           12456


Q ss_pred             HHHcCCCEEEEec----cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHH
Q 015894          181 AVAAGAKEVAIFA----SASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQ  256 (398)
Q Consensus       181 a~~~Gv~~v~i~~----~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~  256 (398)
                      |.+.|++.|.+..    ...............+...+.+.++.++|++.|+.+.  +...-..+...-.+++.+.++++.
T Consensus        97 a~~lG~~~v~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~--lEn~~~~~~~~~~~~~~~~~l~~~  174 (290)
T 2qul_A           97 CHLLGAPVFAGLTFCAWPQSPPLDMKDKRPYVDRAIESVRRVIKVAEDYGIIYA--LEVVNRFEQWLCNDAKEAIAFADA  174 (290)
T ss_dssp             HHHHTCSEEEEEEEEESSCCCCTTCCCCHHHHHHHHHHHHTTHHHHHHHTCEEE--EECCCTTTCSSCCSHHHHHHHHHH
T ss_pred             HHHcCCCEEEeeccccCCcccCCCcccHHHHHHHHHHHHHHHHHHHHHcCCEEE--EEeCccccccccCCHHHHHHHHHH
Confidence            6778999887643    1100000000001134455666777888999998764  221100011112467777776654


Q ss_pred             HHhCCCCEE-EEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCC
Q 015894          257 LYDMGCSEI-SLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAK  335 (398)
Q Consensus       257 l~~~Gad~I-~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~  335 (398)
                      +   +.+.+ ..-|+.=...-.  .+....+++ +.+--.++|+||..+                     .       .+
T Consensus       175 ~---~~~~~g~~~D~~h~~~~g--~d~~~~l~~-~~~~i~~vH~~D~~~---------------------~-------~~  220 (290)
T 2qul_A          175 V---DSPACKVQLDTFHMNIEE--TSFRDAILA-CKGKMGHFHLGEANR---------------------L-------PP  220 (290)
T ss_dssp             H---CCTTEEEEEEHHHHHHHC--SCHHHHHHH-TTTTEEEEEECCTTS---------------------C-------CT
T ss_pred             c---CCCCEEEEEEchhhhhcC--CCHHHHHHH-HHhheeEEEEccCCC---------------------C-------CC
Confidence            3   43222 233652111100  012233333 333348899998742                     0       12


Q ss_pred             CCCCCccHHHHHHHHHhCCCC
Q 015894          336 GASGNVATEDVVYMLNGLGVR  356 (398)
Q Consensus       336 graGNa~lE~vv~~L~~~Gi~  356 (398)
                       +.|..+.+.++..|++.|++
T Consensus       221 -G~G~id~~~~~~~L~~~gy~  240 (290)
T 2qul_A          221 -GEGRLPWDEIFGALKEIGYD  240 (290)
T ss_dssp             -TSSCSCHHHHHHHHHHTTCC
T ss_pred             -CCCCcCHHHHHHHHHHhCCC
Confidence             25789999999999987763

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=94.43  E-value=0.82  Score=44.69  Aligned_cols=138  Identities=17%  Similarity=0.078  Sum_probs=86.8

Q ss_pred             HHHHHcCCCEEEEeccC--------chH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecCCCCCCCCH
Q 015894          179 EAAVAAGAKEVAIFASA--------SES--FSKSNINCTIEDSLIRYRDVALAAREL-SIPVRGYLSCVVGCPVEGMVPP  247 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~~--------Sd~--~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~~v~~~l~~~fg~~~~~r~~~  247 (398)
                      ++|.++|.|.|-|-..-        |+.  +....+|-+.+.-.+.+.++++.+|+. .+.|.+-++.....  .+-.+.
T Consensus       151 ~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v~~pv~vRls~~~~~--~~g~~~  228 (340)
T 3gr7_A          151 RRAKEAGFDVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVWDGPLFVRISASDYH--PDGLTA  228 (340)
T ss_dssp             HHHHHHTCSEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEESCCCS--TTSCCG
T ss_pred             HHHHHcCCCEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhcCCceEEEecccccc--CCCCCH
Confidence            45678999998886552        332  223445667777777777888887764 66666556632101  123467


Q ss_pred             HHHHHHHHHHHhCCCCEEEEccC--cCc---CCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhC-CCEE
Q 015894          248 SKVAYVSKQLYDMGCSEISLGDT--IGV---GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMG-ISTV  321 (398)
Q Consensus       248 ~~l~~~a~~l~~~Gad~I~L~DT--~G~---~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aG-a~~V  321 (398)
                      +...++++.+.++|+|.|.+.+.  ...   ..|..-.++++.+++.+. +||..=+--+   ....+..+++.| ||.|
T Consensus       229 ~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~ik~~~~-iPVi~~GgI~---s~e~a~~~L~~G~aD~V  304 (340)
T 3gr7_A          229 KDYVPYAKRMKEQGVDLVDVSSGAIVPARMNVYPGYQVPFAELIRREAD-IPTGAVGLIT---SGWQAEEILQNGRADLV  304 (340)
T ss_dssp             GGHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHTT-CCEEEESSCC---CHHHHHHHHHTTSCSEE
T ss_pred             HHHHHHHHHHHHcCCCEEEEecCCccCCCCCCCccccHHHHHHHHHHcC-CcEEeeCCCC---CHHHHHHHHHCCCeeEE
Confidence            88899999999999999998652  110   123334567888888774 3444432211   245667788888 8866


Q ss_pred             e
Q 015894          322 D  322 (398)
Q Consensus       322 D  322 (398)
                      -
T Consensus       305 ~  305 (340)
T 3gr7_A          305 F  305 (340)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A

Probab=94.42  E-value=0.67  Score=44.95  Aligned_cols=208  Identities=13%  Similarity=0.093  Sum_probs=120.9

Q ss_pred             HHHHHHhcCCCEEEEe-cC------CCCCcccCCCCHHHHHHHHHhcc---CCcEEEEe--C----CH----hhHHHHHH
Q 015894          124 LIKLLVSSGLAVVEAT-SF------VSPKWVPQLADAKDVMAAIQNVE---GARFPVLT--P----NL----KGFEAAVA  183 (398)
Q Consensus       124 ia~~L~~aGv~~IEvG-~~------~~~~~~p~~~D~~~v~~~i~~~~---~~~l~~l~--~----n~----~~ie~a~~  183 (398)
                      -++.++++|++.|=++ ..      ..|+..  .-..++++..++.+.   ++.+.+++  +    +.    +-++...+
T Consensus        37 sA~l~e~aGf~ai~vsG~~~a~s~~G~pD~~--~vt~~em~~~~~~i~r~~~~~~PviaD~d~Gyg~~~~v~~~v~~l~~  114 (307)
T 3lye_A           37 SARTAMELGFKSLYMTGAGTTASRLGQPDLA--IAQLHDMRDNADMIANLDPFGPPLIADMDTGYGGPIMVARTVEHYIR  114 (307)
T ss_dssp             HHHHHHHTTCSCEEECHHHHHHHHHCCCSSS--CSCHHHHHHHHHHHHTSSTTSCCEEEECTTCSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEeccHHHHHHhcCCCCCC--CCCHHHHHHHHHhhhccCCCCCcEEEECCCCCCCHHHHHHHHHHHHH
Confidence            4567788999999994 21      123322  234566666666442   21234443  2    22    23566678


Q ss_pred             cCCCEEEEeccCchH---HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEE-EEeeeecCCCCCCCCHHHHHHHHHHHHh
Q 015894          184 AGAKEVAIFASASES---FSKSNINCTIEDSLIRYRDVALAARELSIPVRG-YLSCVVGCPVEGMVPPSKVAYVSKQLYD  259 (398)
Q Consensus       184 ~Gv~~v~i~~~~Sd~---~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~-~l~~~fg~~~~~r~~~~~l~~~a~~l~~  259 (398)
                      +|+.-|+|-..+.+-   |...+-=.+.++..++++.+++.+++.|..+.+ .=+.++.     ....+..++-++...+
T Consensus       115 aGaagv~iEDq~~~k~cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~-----~~gldeAi~Ra~ay~e  189 (307)
T 3lye_A          115 SGVAGAHLEDQILTKRCGHLSGKKVVSRDEYLVRIRAAVATKRRLRSDFVLIARTDALQ-----SLGYEECIERLRAARD  189 (307)
T ss_dssp             TTCCEEEECCBCCCC--------CBCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECCHH-----HHCHHHHHHHHHHHHH
T ss_pred             cCCeEEEEcCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEEechhhh-----ccCHHHHHHHHHHHHH
Confidence            999999998887542   111111237888999998777777666643321 0011110     1134566666777888


Q ss_pred             CCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCC-ccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCC
Q 015894          260 MGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHD-TYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGAS  338 (398)
Q Consensus       260 ~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hn-d~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~gra  338 (398)
                      +|||.|.+.   |.-+++++.++.+.+. ..|. .+-+-... +..+.   .-.--+.|+++|-.....+        |+
T Consensus       190 AGAD~ifi~---~~~~~~~~~~i~~~~~-~~Pv-~~n~~~~g~~p~~t---~~eL~~lGv~~v~~~~~~~--------ra  253 (307)
T 3lye_A          190 EGADVGLLE---GFRSKEQAAAAVAALA-PWPL-LLNSVENGHSPLIT---VEEAKAMGFRIMIFSFATL--------AP  253 (307)
T ss_dssp             TTCSEEEEC---CCSCHHHHHHHHHHHT-TSCB-EEEEETTSSSCCCC---HHHHHHHTCSEEEEETTTH--------HH
T ss_pred             CCCCEEEec---CCCCHHHHHHHHHHcc-CCce-eEEeecCCCCCCCC---HHHHHHcCCeEEEEChHHH--------HH
Confidence            999999987   6678888888888874 2342 12221111 12222   2333457999985544433        55


Q ss_pred             CCccHHHHHHHHHhCC
Q 015894          339 GNVATEDVVYMLNGLG  354 (398)
Q Consensus       339 GNa~lE~vv~~L~~~G  354 (398)
                      -..++++.+..|++.|
T Consensus       254 a~~a~~~~~~~l~~~g  269 (307)
T 3lye_A          254 AYAAIRETLVRLRDHG  269 (307)
T ss_dssp             HHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            5777888888887644

>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}

Probab=94.21  E-value=0.72  Score=42.71  Aligned_cols=206  Identities=12%  Similarity=0.037  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe--CCHhhHHHHHHcCCCEEEEeccCch
Q 015894          120 VKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT--PNLKGFEAAVAAGAKEVAIFASASE  197 (398)
Q Consensus       120 ~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~n~~~ie~a~~~Gv~~v~i~~~~Sd  197 (398)
                      +-.++++.+.+.|++.|++.-....... .-.+. +.++.+++..++.+.+..  ++..+++.++++|++.|.+....-+
T Consensus        31 ~~~~~a~~~~~~Ga~~i~v~d~~~~~~~-~g~~~-~~i~~i~~~~~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~~~~~  108 (266)
T 2w6r_A           31 LLRDWVVEVEKRGAGEILLTSIDRDGTK-SGYDT-EMIRFVRPLTTLPIIASGGAGKMEHFLEAFLAGADKALAASVFHF  108 (266)
T ss_dssp             EHHHHHHHHHHHTCSEEEEEETTTSSCS-SCCCH-HHHHHHGGGCCSCEEEESCCCSTHHHHHHHHHTCSEEECCCCC--
T ss_pred             CHHHHHHHHHHCCCCEEEEEecCcccCC-CcccH-HHHHHHHHhcCCCEEEECCCCCHHHHHHHHHcCCcHhhhhHHHHh
Confidence            4578999999999999999643321100 11233 344455543455555433  5678899999999998887543210


Q ss_pred             HHHhhhcCCCHHHHHHHHHHHHHHHHhCC--C-cEEEEEeee--ec---CCCCCCC--CHHHHHHHHHHHHhCCCCEEEE
Q 015894          198 SFSKSNINCTIEDSLIRYRDVALAARELS--I-PVRGYLSCV--VG---CPVEGMV--PPSKVAYVSKQLYDMGCSEISL  267 (398)
Q Consensus       198 ~~~~~~~~~s~~~~l~~~~~~v~~ak~~G--~-~v~~~l~~~--fg---~~~~~r~--~~~~l~~~a~~l~~~Gad~I~L  267 (398)
                        .        ....+.+++   .+++.|  . .+...+..-  -|   -...+..  +.....+.++.+.++|++.|++
T Consensus       109 --~--------~~~~~~~~~---~~~~~g~~~~~i~~~~d~~~~~g~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~  175 (266)
T 2w6r_A          109 --R--------EIDMRELKE---YLKKHGGSGQAVVVAIDAKRVDGEFMVFTHSGKKNTGILLRDWVVEVEKRGAGEILL  175 (266)
T ss_dssp             --------------CHHHHH---HCC----CCCEEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHHHHHHHTTCSEEEE
T ss_pred             --C--------CCCHHHHHH---HHHHcCCCCCEEEEEEEEEecCCCEEEEECCCceecchhHHHHHHHHHHcCCCEEEE
Confidence              0        001122222   223344  2 221112110  00   0001100  0012345567777899999998


Q ss_pred             cc--CcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchH-HHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHH
Q 015894          268 GD--TIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQA-LSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATE  344 (398)
Q Consensus       268 ~D--T~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA-~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE  344 (398)
                      -+  ..|...+.. .++++.+++..+ +|+-.=    -|.. ..++..++++||+.|=+.-.=+.         +.-..+
T Consensus       176 t~~~~~g~~~g~~-~~~i~~l~~~~~-ipvia~----GGI~~~ed~~~~~~~Gadgv~vgsal~~---------~~~~~~  240 (266)
T 2w6r_A          176 TSIDRDGTKSGYD-TEMIRFVRPLTT-LPIIAS----GGAGKMEHFLEAFLAGADAALAASVFHF---------REIDMR  240 (266)
T ss_dssp             EETTTTTTCSCCC-HHHHHHHGGGCC-SCEEEE----SCCCSHHHHHHHHHHTCSEEEESTTTC----------------
T ss_pred             EeecCCCCcCCCC-HHHHHHHHHHcC-CCEEEe----CCCCCHHHHHHHHHcCCHHHHccHHHHc---------CCCCHH
Confidence            55  334433322 456677776543 344332    3444 35667777789886543322122         233577


Q ss_pred             HHHHHHHhCCC
Q 015894          345 DVVYMLNGLGV  355 (398)
Q Consensus       345 ~vv~~L~~~Gi  355 (398)
                      ++...|++.|+
T Consensus       241 ~~~~~l~~~g~  251 (266)
T 2w6r_A          241 ELKEYLKKHGV  251 (266)
T ss_dssp             -----------
T ss_pred             HHHHHHHHCCC
Confidence            77777877776

>1zco_A 2-dehydro-3-deoxyphosphoheptonate aldolase; arabino-heptulosonate, synthase, shikimate, DAHP, DAH7P, DAH DAH7PS, lyase; HET: PEP; 2.25A {Pyrococcus furiosus}

Probab=94.19  E-value=2.4  Score=39.94  Aligned_cols=180  Identities=15%  Similarity=0.174  Sum_probs=111.5

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCccc-CCCC-HHHHHHHHHhc---cCCcEEEEeCCHhhHHHHHHcCCCEEE
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVP-QLAD-AKDVMAAIQNV---EGARFPVLTPNLKGFEAAVAAGAKEVA  190 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p-~~~D-~~~v~~~i~~~---~~~~l~~l~~n~~~ie~a~~~Gv~~v~  190 (398)
                      =+.+.-+++++.+.++|.+.+-.+.|- |+--| ++.. .++-++.+++.   .+..+..=......++.+.+. ++.+.
T Consensus        34 ~~~e~a~~~a~~l~~~Ga~~vk~~~fk-prts~~~~~g~~~egl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~-vd~~k  111 (262)
T 1zco_A           34 ESREQIMKVAEFLAEVGIKVLRGGAFK-PRTSPYSFQGYGEKALRWMREAADEYGLVTVTEVMDTRHVELVAKY-SDILQ  111 (262)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEECBSSC-CCSSTTSCCCCTHHHHHHHHHHHHHHTCEEEEECCCGGGHHHHHHH-CSEEE
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEEecc-cCCCcccccCccHHHHHHHHHHHHHcCCcEEEeeCCHHhHHHHHhh-CCEEE
Confidence            368999999999999999999888763 21111 1110 12333344322   244333333467778888888 99999


Q ss_pred             EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC-CCHHHHHHHHHHHHhCCCCEEEEcc
Q 015894          191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGM-VPPSKVAYVSKQLYDMGCSEISLGD  269 (398)
Q Consensus       191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r-~~~~~l~~~a~~l~~~Gad~I~L~D  269 (398)
                      |-...-.          .   .    ..++++-+.|.+|.  +.       .+. .+++.+...++.+...|.+.+.|+-
T Consensus       112 Iga~~~~----------n---~----~ll~~~a~~~kPV~--lk-------~G~~~t~~e~~~Av~~i~~~Gn~~i~L~~  165 (262)
T 1zco_A          112 IGARNSQ----------N---F----ELLKEVGKVENPVL--LK-------RGMGNTIQELLYSAEYIMAQGNENVILCE  165 (262)
T ss_dssp             ECGGGTT----------C---H----HHHHHHTTSSSCEE--EE-------CCTTCCHHHHHHHHHHHHTTTCCCEEEEE
T ss_pred             ECccccc----------C---H----HHHHHHHhcCCcEE--Ee-------cCCCCCHHHHHHHHHHHHHCCCCeEEEEE
Confidence            8543111          1   1    22344445788886  33       123 3799999999999999987777766


Q ss_pred             ----Cc-CcCCHHHHH-HHHHHHHhhCCCCeE-EEEeCCc--cchHHHHHHHHHHhCCC--EEeecc
Q 015894          270 ----TI-GVGTPGTVI-PMLEAVLDAVPVDKL-AVHFHDT--YGQALSNILASLQMGIS--TVDSSV  325 (398)
Q Consensus       270 ----T~-G~~~P~~v~-~lv~~l~~~~p~~~l-~~H~Hnd--~GlA~ANalaAl~aGa~--~VD~Sv  325 (398)
                          +. ++ .+..+. ..+..+++.+. .|| +.=.|-+  .-+...-+.+|+..||+  +|+.=+
T Consensus       166 RG~~~~~~y-~~~~v~L~ai~~lk~~~~-~pVi~d~sH~~g~~~~v~~~~~aAva~Ga~Gl~iE~H~  230 (262)
T 1zco_A          166 RGIRTFETA-TRFTLDISAVPVVKELSH-LPIIVDPSHPAGRRSLVIPLAKAAYAIGADGIMVEVHP  230 (262)
T ss_dssp             CCBCCSCCS-SSSBCCTTHHHHHHHHBS-SCEEECSSTTTCSGGGHHHHHHHHHHTTCSEEEEEBCS
T ss_pred             CCCCCCCCc-ChhhcCHHHHHHHHhhhC-CCEEEEcCCCCCccchHHHHHHHHHHcCCCEEEEEecC
Confidence                43 44 455444 56677777653 345 5545532  22333557779999999  887763

>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A

Probab=94.18  E-value=0.64  Score=44.98  Aligned_cols=206  Identities=13%  Similarity=0.094  Sum_probs=120.2

Q ss_pred             HHHHHHhcCCCEEEEe-cC------CCCCcccCCCCHHHHHHHHHhccCC--cEEEEe--C----CH----hhHHHHHHc
Q 015894          124 LIKLLVSSGLAVVEAT-SF------VSPKWVPQLADAKDVMAAIQNVEGA--RFPVLT--P----NL----KGFEAAVAA  184 (398)
Q Consensus       124 ia~~L~~aGv~~IEvG-~~------~~~~~~p~~~D~~~v~~~i~~~~~~--~l~~l~--~----n~----~~ie~a~~~  184 (398)
                      -++.++++|++.|=++ ..      ..|+..  .-+.++++..++.+...  .+.+++  +    +.    +-++...++
T Consensus        30 sA~l~e~aGf~ai~vsG~~~a~~~~G~pD~~--~vt~~em~~~~~~I~~~~~~~PviaD~d~Gyg~~~~v~~tv~~l~~a  107 (302)
T 3fa4_A           30 SARVALSAGFDALYMTGAGTAASVHGQADLG--ICTLNDMRANAEMISNISPSTPVIADADTGYGGPIMVARTTEQYSRS  107 (302)
T ss_dssp             HHHHHHTTTCSCEEECHHHHHHHHHSCCSSS--CCCHHHHHHHHHHHHTTSTTSCEEEECTTTTSSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCEEEeCcHHHHHHHcCCCCCC--cCCHHHHHHHHHHHHhhccCCCEEEECCCCCCCHHHHHHHHHHHHHc
Confidence            4667888999999984 21      123322  23456666666543221  333333  2    22    235566789


Q ss_pred             CCCEEEEeccCchH---HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEE-EEeeeecCCCCCCCCHHHHHHHHHHHHhC
Q 015894          185 GAKEVAIFASASES---FSKSNINCTIEDSLIRYRDVALAARELSIPVRG-YLSCVVGCPVEGMVPPSKVAYVSKQLYDM  260 (398)
Q Consensus       185 Gv~~v~i~~~~Sd~---~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~-~l~~~fg~~~~~r~~~~~l~~~a~~l~~~  260 (398)
                      |+.-|+|-..+.+-   |...+-=.+.++..++++.+++.+++.|..+.. .=+.++.     ....+...+-++...++
T Consensus       108 Gaagv~iEDq~~~Krcgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~-----~~gldeAi~Ra~ay~eA  182 (302)
T 3fa4_A          108 GVAAFHIEDQVQTKRCGHLAGKILVDTDTYVTRIRAAVQARQRIGSDIVVIARTDSLQ-----THGYEESVARLRAARDA  182 (302)
T ss_dssp             TCCEEEECSBCCC-------CCCBCCHHHHHHHHHHHHHHHHHHTCCCEEEEEECCHH-----HHCHHHHHHHHHHHHTT
T ss_pred             CCcEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCEEEEEEecccc-----cCCHHHHHHHHHHHHHc
Confidence            99999998887542   211122237899999998777776655554321 0011110     12345666667777889


Q ss_pred             CCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEE--eCC-ccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCC
Q 015894          261 GCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVH--FHD-TYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGA  337 (398)
Q Consensus       261 Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H--~Hn-d~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~gr  337 (398)
                      |+|.|.+.   |.-+|+++.++.+.+.    ..|+-+-  ... +..+   ..-.--++|+++|-.....+        |
T Consensus       183 GAD~ifi~---g~~~~~ei~~~~~~~~----~~Pl~~n~~~~g~~p~~---~~~eL~~lGv~~v~~~~~~~--------r  244 (302)
T 3fa4_A          183 GADVGFLE---GITSREMARQVIQDLA----GWPLLLNMVEHGATPSI---SAAEAKEMGFRIIIFPFAAL--------G  244 (302)
T ss_dssp             TCSEEEET---TCCCHHHHHHHHHHTT----TSCEEEECCTTSSSCCC---CHHHHHHHTCSEEEETTTTH--------H
T ss_pred             CCCEEeec---CCCCHHHHHHHHHHhc----CCceeEEEecCCCCCCC---CHHHHHHcCCCEEEEchHHH--------H
Confidence            99999885   4567888887777653    2233322  111 1122   22233456999887666655        5


Q ss_pred             CCCccHHHHHHHHHhCC
Q 015894          338 SGNVATEDVVYMLNGLG  354 (398)
Q Consensus       338 aGNa~lE~vv~~L~~~G  354 (398)
                      +-..++++.+..|++.|
T Consensus       245 aa~~A~~~~~~~i~~~g  261 (302)
T 3fa4_A          245 PAVAAMREAMEKLKRDG  261 (302)
T ss_dssp             HHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHcC
Confidence            56778888888887644

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*

Probab=94.00  E-value=1.2  Score=43.62  Aligned_cols=138  Identities=19%  Similarity=0.146  Sum_probs=85.8

Q ss_pred             HHHHHcCCCEEEEeccC--------chH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-C--CcEEEEEeeeecCCCCCCC
Q 015894          179 EAAVAAGAKEVAIFASA--------SES--FSKSNINCTIEDSLIRYRDVALAAREL-S--IPVRGYLSCVVGCPVEGMV  245 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~~--------Sd~--~~~~~~~~s~~~~l~~~~~~v~~ak~~-G--~~v~~~l~~~fg~~~~~r~  245 (398)
                      ++|.++|.|.|.|-.+-        |+.  +....+|-+.++-.+.+.++++.+|+. |  +.|.+-++....  ..+-.
T Consensus       159 ~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~--~~~g~  236 (349)
T 3hgj_A          159 RRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDW--GEGGW  236 (349)
T ss_dssp             HHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCC--STTSC
T ss_pred             HHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEeccccc--cCCCC
Confidence            46678999988886542        121  223345667777777788888888775 3  446555553211  11235


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEcc--CcCc----CCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhC-C
Q 015894          246 PPSKVAYVSKQLYDMGCSEISLGD--TIGV----GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMG-I  318 (398)
Q Consensus       246 ~~~~l~~~a~~l~~~Gad~I~L~D--T~G~----~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aG-a  318 (398)
                      +++...++++.+.++|+|.|.+..  +...    ..|..-.++++.+++.++ +||..=+--   .....+..+++.| |
T Consensus       237 ~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~-iPVi~~Ggi---~t~e~a~~~l~~G~a  312 (349)
T 3hgj_A          237 SLEDTLAFARRLKELGVDLLDCSSGGVVLRVRIPLAPGFQVPFADAVRKRVG-LRTGAVGLI---TTPEQAETLLQAGSA  312 (349)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEEECCCSCSSSCCCCCTTTTHHHHHHHHHHHC-CEEEECSSC---CCHHHHHHHHHTTSC
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEecCCcCcccccCCCccccHHHHHHHHHHcC-ceEEEECCC---CCHHHHHHHHHCCCc
Confidence            788899999999999999998875  1111    123334567788887764 344432211   1246677888898 7


Q ss_pred             CEEe
Q 015894          319 STVD  322 (398)
Q Consensus       319 ~~VD  322 (398)
                      |.|-
T Consensus       313 D~V~  316 (349)
T 3hgj_A          313 DLVL  316 (349)
T ss_dssp             SEEE
T ss_pred             eEEE
Confidence            7653

>3aam_A Endonuclease IV, endoiv; DNA repair, base excision repair, BER, TIM barrel, endonucle hydrolase, structural genomics, NPPSFA; 1.58A {Thermus thermophilus}

Probab=93.99  E-value=1.4  Score=40.34  Aligned_cols=196  Identities=18%  Similarity=0.198  Sum_probs=101.3

Q ss_pred             HHHHHHHHHHhcCCCEEEEecCCCCC-cccCCCCH---HHHHHHHHhccCC-cEEEEeC---CH---------------h
Q 015894          120 VKVELIKLLVSSGLAVVEATSFVSPK-WVPQLADA---KDVMAAIQNVEGA-RFPVLTP---NL---------------K  176 (398)
Q Consensus       120 ~k~~ia~~L~~aGv~~IEvG~~~~~~-~~p~~~D~---~~v~~~i~~~~~~-~l~~l~~---n~---------------~  176 (398)
                      .-.+.++.+.++|++.||+ +...|. |.+..-+.   +++.+.++. .+. .+++..+   |.               +
T Consensus        15 ~~~~~~~~~~~~G~~~vEl-~~~~~~~~~~~~~~~~~~~~~~~~~~~-~gl~~~~~h~~~~~~l~s~~~~r~~~~~~~~~   92 (270)
T 3aam_A           15 GVAGAVEEATALGLTAFQI-FAKSPRSWRPRALSPAEVEAFRALREA-SGGLPAVIHASYLVNLGAEGELWEKSVASLAD   92 (270)
T ss_dssp             HHHHHHHHHHHHTCSCEEE-ESSCTTCCSCCCCCHHHHHHHHHHHHH-TTCCCEEEECCTTCCTTCSSTHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHcCCCEEEE-eCCCCCcCcCCCCCHHHHHHHHHHHHH-cCCceEEEecCcccCCCCCHHHHHHHHHHHHH
Confidence            3456777888899999999 332321 21111122   223333332 244 4444432   11               1


Q ss_pred             hHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHH-hCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 015894          177 GFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAR-ELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSK  255 (398)
Q Consensus       177 ~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak-~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~  255 (398)
                      .++.|.+.|++.|.+..+..          +.+...+.+.++.++|+ +.|+.+.  +....+.+..--.+++.+.++++
T Consensus        93 ~i~~a~~lGa~~vv~h~g~~----------~~~~~~~~l~~l~~~a~~~~gv~l~--lEn~~~~~~~~~~~~~~~~~l~~  160 (270)
T 3aam_A           93 DLEKAALLGVEYVVVHPGSG----------RPERVKEGALKALRLAGVRSRPVLL--VENTAGGGEKVGARFEELAWLVA  160 (270)
T ss_dssp             HHHHHHHHTCCEEEECCCBS----------CHHHHHHHHHHHHHHHTCCSSSEEE--EECCCCCTTBSCCSHHHHHHHHT
T ss_pred             HHHHHHHcCCCEEEECCCCC----------CHHHHHHHHHHHHHhhcccCCCEEE--EecCCCCCCccCCCHHHHHHHHH
Confidence            24566778988887654321          12566777788888887 7787654  33221110001137788887776


Q ss_pred             HHHhCCCCEEEEccCc-----CcCCHHHHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCC
Q 015894          256 QLYDMGCSEISLGDTI-----GVGTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLG  329 (398)
Q Consensus       256 ~l~~~Gad~I~L~DT~-----G~~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlG  329 (398)
                      .+ ..|   +++ ||.     |.-....+.++++.+.+.++ +--.++|+||..+--          |.. .|- -..+ 
T Consensus       161 ~v-~vg---~~l-D~~H~~~~g~d~~~~~~~~l~~~~~~~g~~~i~~vHl~D~~~~~----------~~~-~d~-h~~~-  222 (270)
T 3aam_A          161 DT-PLQ---VCL-DTCHAYAAGYDVAEDPLGVLDALDRAVGLERVPVVHLNDSVGGL----------GSR-VDH-HAHL-  222 (270)
T ss_dssp             TS-SCE---EEE-EHHHHHHHTCCTTTCHHHHHHHHHHHTCGGGCCEEECCEESSCT----------TCC-CCC-EECT-
T ss_pred             hC-CEE---EEE-ehhhHHhccCCchhhHHHHHHHHHHhcCccceeEEEEecCCCcc----------ccC-ccc-ccCC-
Confidence            55 222   222 543     21111134556666655443 334788999875420          110 000 0012 


Q ss_pred             CCCCCCCCCCCccHHHHHHHHHhCCC
Q 015894          330 GCPYAKGASGNVATEDVVYMLNGLGV  355 (398)
Q Consensus       330 ecp~a~graGNa~lE~vv~~L~~~Gi  355 (398)
                             +.|..+ +.++..|++.|+
T Consensus       223 -------G~G~id-~~~~~~L~~~~y  240 (270)
T 3aam_A          223 -------LQGKIG-EGLKRVFLDPRL  240 (270)
T ss_dssp             -------TSSSST-THHHHHHTCGGG
T ss_pred             -------CCCCcC-HHHHHHHhccCc
Confidence                   257889 999999987544

>3n9r_A Fructose-bisphosphate aldolase; FBP aldolase, class II, inhibitor, lyase; HET: TD3; 1.80A {Helicobacter pylori} SCOP: c.1.10.0 PDB: 3c52_A* 3c56_A* 3c4u_A* 3n9s_A*

Probab=93.98  E-value=0.24  Score=48.07  Aligned_cols=118  Identities=16%  Similarity=0.198  Sum_probs=83.8

Q ss_pred             HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEcc-CcCcCCHHHHHHHHHHHHhhCCC
Q 015894          215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGD-TIGVGTPGTVIPMLEAVLDAVPV  292 (398)
Q Consensus       215 ~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~D-T~G~~~P~~v~~lv~~l~~~~p~  292 (398)
                      ++++.+.|++.|+-|-+ +.         -.+.+.+..+++.+.+.+... |.+.- +..++...-+..++..+.+.++.
T Consensus         5 ~~~ll~~A~~~~yAV~A-fN---------v~n~e~~~avi~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~aa~~~~~   74 (307)
T 3n9r_A            5 GNEILLKAHKEGYGVGA-FN---------FVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERYPH   74 (307)
T ss_dssp             HHHHHHHHHHHTCCEEE-EE---------CSSHHHHHHHHHHHHHHTCCEEEEEEHHHHHHHCHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHcCceEEE-Ee---------eCCHHHHHHHHHHHHHhCCCEEEEcChhhhhhCCHHHHHHHHHHHHHhcCC
Confidence            45778899999998742 22         136788889999999998874 44432 23334445677777777776555


Q ss_pred             CeEEEEeCCccchHHHHHHHHHHhCCC--EEeeccccCCCCCCCCCCCCCc-cHHHHHHHHHhC
Q 015894          293 DKLAVHFHDTYGQALSNILASLQMGIS--TVDSSVSGLGGCPYAKGASGNV-ATEDVVYMLNGL  353 (398)
Q Consensus       293 ~~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGecp~a~graGNa-~lE~vv~~L~~~  353 (398)
                      +|+.+|.  |.|.....+..|+++|.+  ++|+|-..+-+         |. -|.+++.+.+..
T Consensus        75 VPValHL--DHg~~~e~~~~ai~~GFtSVMiDgS~~p~ee---------Ni~~Tk~vv~~ah~~  127 (307)
T 3n9r_A           75 IPVALHL--DHGTTFESCEKAVKAGFTSVMIDASHHAFEE---------NLELTSKVVKMAHNA  127 (307)
T ss_dssp             SCEEEEE--EEECSHHHHHHHHHHTCSEEEECCTTSCHHH---------HHHHHHHHHHHHHHT
T ss_pred             CcEEEEC--CCCCCHHHHHHHHHhCCCcEEEECCCCCHHH---------HHHHHHHHHHHHHHc
Confidence            6777765  556667899999999998  77999998777         65 566777776643

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=93.97  E-value=1.3  Score=40.27  Aligned_cols=157  Identities=10%  Similarity=0.044  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe------------CCHhhHHHHHHcCCC
Q 015894          120 VKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT------------PNLKGFEAAVAAGAK  187 (398)
Q Consensus       120 ~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~------------~n~~~ie~a~~~Gv~  187 (398)
                      +..++++.+.+.|++.|++..            + +.++.+++..+..+..+.            +..+.++.++++|++
T Consensus        37 ~~~~~a~~~~~~G~~~i~~~~------------~-~~i~~i~~~~~~p~i~~~~~~~~~~~~~i~~~~~~i~~~~~~Gad  103 (234)
T 1yxy_A           37 IMPLMAKAAQEAGAVGIRANS------------V-RDIKEIQAITDLPIIGIIKKDYPPQEPFITATMTEVDQLAALNIA  103 (234)
T ss_dssp             SHHHHHHHHHHHTCSEEEEES------------H-HHHHHHHTTCCSCEEEECBCCCTTSCCCBSCSHHHHHHHHTTTCS
T ss_pred             hHHHHHHHHHHCCCcEeecCC------------H-HHHHHHHHhCCCCEEeeEcCCCCccccccCChHHHHHHHHHcCCC
Confidence            568899999999999999862            1 235566654455543221            235678899999999


Q ss_pred             EEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE
Q 015894          188 EVAIFASASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEI  265 (398)
Q Consensus       188 ~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I  265 (398)
                      .|.+-......    .-+..       +.+.++.+++.  +..+.+  .         ..+++.    ++.+.+.|+|.|
T Consensus       104 ~V~l~~~~~~~----~~~~~-------~~~~i~~i~~~~~~~~v~~--~---------~~t~~e----a~~a~~~Gad~i  157 (234)
T 1yxy_A          104 VIAMDCTKRDR----HDGLD-------IASFIRQVKEKYPNQLLMA--D---------ISTFDE----GLVAHQAGIDFV  157 (234)
T ss_dssp             EEEEECCSSCC----TTCCC-------HHHHHHHHHHHCTTCEEEE--E---------CSSHHH----HHHHHHTTCSEE
T ss_pred             EEEEcccccCC----CCCcc-------HHHHHHHHHHhCCCCeEEE--e---------CCCHHH----HHHHHHcCCCEE
Confidence            98775442210    00011       23556666665  554431  1         123433    566778999998


Q ss_pred             E--EccCc-Cc--CCHHHHHHHHHHHHhhCCCCeEEEEeCCccchH-HHHHHHHHHhCCCEEe
Q 015894          266 S--LGDTI-GV--GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQA-LSNILASLQMGISTVD  322 (398)
Q Consensus       266 ~--L~DT~-G~--~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA-~ANalaAl~aGa~~VD  322 (398)
                      .  +.... |.  ..+.. .++++.+++.  ++++..    +-|.. ..|+...+++||+.|=
T Consensus       158 ~~~v~g~~~~~~~~~~~~-~~~i~~~~~~--~ipvia----~GGI~s~~~~~~~~~~Gad~v~  213 (234)
T 1yxy_A          158 GTTLSGYTPYSRQEAGPD-VALIEALCKA--GIAVIA----EGKIHSPEEAKKINDLGVAGIV  213 (234)
T ss_dssp             ECTTTTSSTTSCCSSSCC-HHHHHHHHHT--TCCEEE----ESCCCSHHHHHHHHTTCCSEEE
T ss_pred             eeeccccCCCCcCCCCCC-HHHHHHHHhC--CCCEEE----ECCCCCHHHHHHHHHCCCCEEE
Confidence            2  22111 11  11222 2445666553  344544    33555 6777888888988653

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*

Probab=93.92  E-value=1.5  Score=42.66  Aligned_cols=139  Identities=14%  Similarity=0.024  Sum_probs=86.8

Q ss_pred             HHHHHHcCCCEEEEeccC--------chH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecCCCCCCCC
Q 015894          178 FEAAVAAGAKEVAIFASA--------SES--FSKSNINCTIEDSLIRYRDVALAAREL-SIPVRGYLSCVVGCPVEGMVP  246 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~--------Sd~--~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~~v~~~l~~~fg~~~~~r~~  246 (398)
                      .+++.++|.|.|.|-..-        |+.  .....+|-+.++-.+.+.++++.+|+. ++.|.+-++..-  ...+..+
T Consensus       150 A~~a~~aGfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v~~pv~vris~~~--~~~~g~~  227 (338)
T 1z41_A          150 AARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASD--YTDKGLD  227 (338)
T ss_dssp             HHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCC--CSTTSCC
T ss_pred             HHHHHHcCCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHcCCcEEEEecCcc--cCCCCCC
Confidence            346678999998886532        121  122345566776677777788777764 666665565321  1122457


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEccCcC--c---CCHHHHHHHHHHHHhhCCCCeEEEEeCCccch-HHHHHHHHHHhC-CC
Q 015894          247 PSKVAYVSKQLYDMGCSEISLGDTIG--V---GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQ-ALSNILASLQMG-IS  319 (398)
Q Consensus       247 ~~~l~~~a~~l~~~Gad~I~L~DT~G--~---~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~Gl-A~ANalaAl~aG-a~  319 (398)
                      .+...++++.+.++|++.|.+.+..-  .   ..|..-.++++.+++.+. +||..=+    |. ....+..+++.| |+
T Consensus       228 ~~~~~~~a~~l~~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~~~~ir~~~~-iPVi~~G----gi~s~~~a~~~l~~G~aD  302 (338)
T 1z41_A          228 IADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQAD-MATGAVG----MITDGSMAEEILQNGRAD  302 (338)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHC-CEEEECS----SCCSHHHHHHHHHTTSCS
T ss_pred             HHHHHHHHHHHHHcCCCEEEEecCccccCCCCCCccchHHHHHHHHHHCC-CCEEEEC----CCCCHHHHHHHHHcCCce
Confidence            88899999999999999999876421  1   122223566777877763 3444322    22 246677788888 88


Q ss_pred             EEee
Q 015894          320 TVDS  323 (398)
Q Consensus       320 ~VD~  323 (398)
                      .|-.
T Consensus       303 ~V~i  306 (338)
T 1z41_A          303 LIFI  306 (338)
T ss_dssp             EEEE
T ss_pred             EEee
Confidence            6643

>2yr1_A 3-dehydroquinate dehydratase; amino acid biosynthesis, 3-dehydroquinase, structural genomi NPPSFA; 2.00A {Geobacillus kaustophilus}

Probab=93.89  E-value=4.2  Score=38.08  Aligned_cols=220  Identities=15%  Similarity=0.057  Sum_probs=132.2

Q ss_pred             cEEEeCCCcccCCCCC---CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHH---HHHHhcc-CCcEEE
Q 015894           98 VKIVEVGPRDGLQNEK---NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVM---AAIQNVE-GARFPV  170 (398)
Q Consensus        98 I~i~D~TLRDG~Q~~~---~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~---~~i~~~~-~~~l~~  170 (398)
                      |++-+.++..|.-..-   ..-+.++.+..++.+.+.|.|.||+-...-.+    ..+.+.+.   ..+++.. +..+..
T Consensus         8 ~~v~~~~~g~~~p~Icv~l~~~~~~e~~~~~~~~~~~~~D~vElRvD~l~~----~~~~~~v~~~l~~lr~~~~~~PiI~   83 (257)
T 2yr1_A            8 IKVRNIWIGGTEPCICAPVVGEDDRKVLREAEEVCRKQPDLLEWRADFFRA----IDDQERVLATANGLRNIAGEIPILF   83 (257)
T ss_dssp             EEETTEEESSSSCEEEEEECCSSHHHHHHHHHHHHHSCCSEEEEEGGGCTT----TTCHHHHHHHHHHHHHHSSSCCEEE
T ss_pred             EEEeeeeeCCCCcEEEEEecCCCHHHHHHHHHHHhhcCCCEEEEEeecccc----cCcHHHHHHHHHHHHHhccCCCEEE
Confidence            5666666655543211   12245555677777788899999997532111    12344444   3444332 444433


Q ss_pred             EeCCH-----------h----hHHHHHHcC-CCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEe
Q 015894          171 LTPNL-----------K----GFEAAVAAG-AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLS  234 (398)
Q Consensus       171 l~~n~-----------~----~ie~a~~~G-v~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~  234 (398)
                      -.|..           .    =++.+++.| ++.|.|-....+                .+.++++.+++.|..+-+..=
T Consensus        84 T~Rt~~eGG~~~~~~~~~~~~ll~~~~~~g~~d~iDvEl~~~~----------------~~~~l~~~~~~~~~kvI~S~H  147 (257)
T 2yr1_A           84 TIRSEREGGQPIPLNEAEVRRLIEAICRSGAIDLVDYELAYGE----------------RIADVRRMTEECSVWLVVSRH  147 (257)
T ss_dssp             ECCCTTTTCCCCSSCHHHHHHHHHHHHHHTCCSEEEEEGGGTT----------------HHHHHHHHHHHTTCEEEEEEE
T ss_pred             EEeecccCCCCCCCCHHHHHHHHHHHHHcCCCCEEEEECCCCh----------------hHHHHHHHHHhCCCEEEEEec
Confidence            33421           1    145677888 999999655322                234567788888887753222


Q ss_pred             eeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhh--CCCCeEEEEeCCccchHHHHHHH
Q 015894          235 CVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDA--VPVDKLAVHFHDTYGQALSNILA  312 (398)
Q Consensus       235 ~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~--~p~~~l~~H~Hnd~GlA~ANala  312 (398)
                      . |    ....+.+.+....+++.++|||.+-|+=+.  -++.++..+++...+.  .+..|+-.-.  .-.++.-.-+.
T Consensus       148 d-f----~~tP~~~el~~~~~~~~~~gaDivKia~~a--~s~~D~l~ll~~~~~~~~~~~~P~I~~~--MG~~G~~SRi~  218 (257)
T 2yr1_A          148 Y-F----DGTPRKETLLADMRQAERYGADIAKVAVMP--KSPEDVLVLLQATEEARRELAIPLITMA--MGGLGAITRLA  218 (257)
T ss_dssp             E-S----SCCCCHHHHHHHHHHHHHTTCSEEEEEECC--SSHHHHHHHHHHHHHHHHHCSSCEEEEE--CTTTTHHHHHH
T ss_pred             C-C----CCCcCHHHHHHHHHHHHhcCCCEEEEEecc--CCHHHHHHHHHHHHHHhccCCCCEEEEE--CCCCcchHHHH
Confidence            1 1    122235788899999999999999888764  3578888888766542  2333443322  22234566667


Q ss_pred             HHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhC
Q 015894          313 SLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGL  353 (398)
Q Consensus       313 Al~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~  353 (398)
                      +-..|-...-+++.   + +-   ..|+.+.+++...|+.+
T Consensus       219 ~~~~GS~~Tf~~l~---~-~s---APGQl~~~el~~~l~~l  252 (257)
T 2yr1_A          219 GWLFGSAVTFAVGN---Q-SS---APGQIPIDDVRTVLSIL  252 (257)
T ss_dssp             GGGGTBCEEECBSS---S-CS---STTCCBHHHHHHHHHHH
T ss_pred             HHHhCCceEecCCC---C-CC---CCCCCCHHHHHHHHHHH
Confidence            77778887777773   2 22   46699999998877643

>3qc0_A Sugar isomerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-biology,; HET: UNL PG4; 1.45A {Sinorhizobium meliloti} PDB: 3ju2_A

Probab=93.88  E-value=0.78  Score=41.85  Aligned_cols=213  Identities=12%  Similarity=0.044  Sum_probs=112.2

Q ss_pred             ccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe----
Q 015894           97 FVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT----  172 (398)
Q Consensus        97 ~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~----  172 (398)
                      ++-+.-.|+|..       ++.+   +.++.+.++|++.||+....-     .-.+.+++.+.+++ .+.++.++.    
T Consensus         6 ~lg~~~~~~~~~-------~~~~---~~l~~~~~~G~~~vEl~~~~~-----~~~~~~~~~~~l~~-~gl~~~~~~~~~~   69 (275)
T 3qc0_A            6 GLSINLATIREQ-------CGFA---EAVDICLKHGITAIAPWRDQV-----AAIGLGEAGRIVRA-NGLKLTGLCRGGF   69 (275)
T ss_dssp             TEEEEGGGGTTT-------CCHH---HHHHHHHHTTCCEEECBHHHH-----HHHCHHHHHHHHHH-HTCEESCEEEEEC
T ss_pred             cceeeeeeccCC-------CCHH---HHHHHHHHcCCCEEEeccccc-----cccCHHHHHHHHHH-cCCceEEeecCCC
Confidence            466666666432       2444   466777899999999975310     01245555555553 234433322    


Q ss_pred             ---CCH-----------hhHHHHHHcCCCEEEEeccCchHHHhhhcCCC----HHHHHHHHHHHHHHHHhCCCcEEEEEe
Q 015894          173 ---PNL-----------KGFEAAVAAGAKEVAIFASASESFSKSNINCT----IEDSLIRYRDVALAARELSIPVRGYLS  234 (398)
Q Consensus       173 ---~n~-----------~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s----~~~~l~~~~~~v~~ak~~G~~v~~~l~  234 (398)
                         ++.           +.++.|.+.|++.|.+.....+.     -..+    .+...+.+.++.++|++.|+.+...-.
T Consensus        70 ~~~~d~~~r~~~~~~~~~~i~~a~~lG~~~v~~~~g~~~~-----~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~lE~~  144 (275)
T 3qc0_A           70 FPAPDASGREKAIDDNRRAVDEAAELGADCLVLVAGGLPG-----GSKNIDAARRMVVEGIAAVLPHARAAGVPLAIEPL  144 (275)
T ss_dssp             CCCSSHHHHHHHHHHHHHHHHHHHHTTCSCEEEECBCCCT-----TCCCHHHHHHHHHHHHHHHHHHHHHHTCCEEECCC
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHhCCCEEEEeeCCCCC-----CCcCHHHHHHHHHHHHHHHHHHHHHcCCEEEEeEC
Confidence               111           13566778999999887532110     0122    334556677788889999988652211


Q ss_pred             eee-cCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHH
Q 015894          235 CVV-GCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILA  312 (398)
Q Consensus       235 ~~f-g~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANala  312 (398)
                      .-+ +.+...-.+++.+.++++.+-   ...=..-|+.=...-.+.   ...+++..| +--.++|++|...-       
T Consensus       145 ~~~~~~~~~~~~~~~~~~~l~~~~~---~~vg~~~D~~h~~~~~d~---~~~l~~~~~~~~i~~vH~~D~~~~-------  211 (275)
T 3qc0_A          145 HPMYAADRACVNTLGQALDICETLG---PGVGVAIDVYHVWWDPDL---ANQIARAGKMKAILAHHICDWLVP-------  211 (275)
T ss_dssp             CGGGTTTTBSCCCHHHHHHHHHHHC---TTEEEEEEHHHHTTCTTH---HHHHHHHHHTTCEEEEEECBCCSS-------
T ss_pred             CCcccCCccccCCHHHHHHHHHHhC---cccEEEEEhhhheeCCCH---HHHHHHcCccceEEEEEecCCCCC-------
Confidence            000 001111246777777776553   222223354332221223   334443333 33478899985321       


Q ss_pred             HHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCC
Q 015894          313 SLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVR  356 (398)
Q Consensus       313 Al~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~  356 (398)
                         .+ +.    +.  +.+  .+ +.|..+...++..|++.|++
T Consensus       212 ---~~-~~----~~--~r~--~~-G~G~id~~~~~~~L~~~gy~  242 (275)
T 3qc0_A          212 ---TK-DM----LT--DRG--MM-GDGVIDLKGIRRRIEAAGFH  242 (275)
T ss_dssp             ---CC-CS----SS--BCB--CT-TSSCCCHHHHHHHHHHTTCC
T ss_pred             ---cc-cc----cC--CCc--CC-CCCccCHHHHHHHHHHcCCC
Confidence               01 00    00  111  12 37899999999999987764

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=93.85  E-value=3.5  Score=36.92  Aligned_cols=162  Identities=12%  Similarity=0.116  Sum_probs=97.1

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEE------------eCCHhhHHHHHHc
Q 015894          117 PAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVL------------TPNLKGFEAAVAA  184 (398)
Q Consensus       117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l------------~~n~~~ie~a~~~  184 (398)
                      ..+...++++.+.++|.+.|++..            . +.++.+++..+..+...            .+..+.++.+.++
T Consensus        21 ~~~~~~~~a~~~~~~Ga~~i~~~~------------~-~~i~~i~~~~~~pv~~~~~~~~~~~~~~i~~~~~~i~~~~~~   87 (223)
T 1y0e_A           21 SSFIMSKMALAAYEGGAVGIRANT------------K-EDILAIKETVDLPVIGIVKRDYDHSDVFITATSKEVDELIES   87 (223)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEES------------H-HHHHHHHHHCCSCEEEECBCCCTTCCCCBSCSHHHHHHHHHH
T ss_pred             CCccHHHHHHHHHHCCCeeeccCC------------H-HHHHHHHHhcCCCEEeeeccCCCccccccCCcHHHHHHHHhC
Confidence            557788999999999999998752            1 33455554444444321            1345678899999


Q ss_pred             CCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCC
Q 015894          185 GAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGC  262 (398)
Q Consensus       185 Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Ga  262 (398)
                      |++.|.+....-.     +...+       +.++++.+++.  |..+.+  .         ..++++    +..+.+.|+
T Consensus        88 Gad~v~l~~~~~~-----~p~~~-------~~~~i~~~~~~~~~~~v~~--~---------~~t~~e----~~~~~~~G~  140 (223)
T 1y0e_A           88 QCEVIALDATLQQ-----RPKET-------LDELVSYIRTHAPNVEIMA--D---------IATVEE----AKNAARLGF  140 (223)
T ss_dssp             TCSEEEEECSCSC-----CSSSC-------HHHHHHHHHHHCTTSEEEE--E---------CSSHHH----HHHHHHTTC
T ss_pred             CCCEEEEeeeccc-----CcccC-------HHHHHHHHHHhCCCceEEe--c---------CCCHHH----HHHHHHcCC
Confidence            9999887543210     00001       23556777776  766531  1         124444    345778999


Q ss_pred             CEEEEccC------cCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccch-HHHHHHHHHHhCCCEEee
Q 015894          263 SEISLGDT------IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQ-ALSNILASLQMGISTVDS  323 (398)
Q Consensus       263 d~I~L~DT------~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~Gl-A~ANalaAl~aGa~~VD~  323 (398)
                      +.|.+.-.      .+......-.++++.+++.+. +|+..    +-|. ...++..++++||+.|=.
T Consensus       141 d~i~~~~~g~t~~~~~~~~~~~~~~~~~~~~~~~~-ipvia----~GGI~~~~~~~~~~~~Gad~v~v  203 (223)
T 1y0e_A          141 DYIGTTLHGYTSYTQGQLLYQNDFQFLKDVLQSVD-AKVIA----EGNVITPDMYKRVMDLGVHCSVV  203 (223)
T ss_dssp             SEEECTTTTSSTTSTTCCTTHHHHHHHHHHHHHCC-SEEEE----ESSCCSHHHHHHHHHTTCSEEEE
T ss_pred             CEEEeCCCcCcCCCCCCCCCcccHHHHHHHHhhCC-CCEEE----ecCCCCHHHHHHHHHcCCCEEEE
Confidence            98865321      111102223456777777653 45554    3455 567888888999886643

>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*

Probab=93.74  E-value=1.1  Score=40.20  Aligned_cols=156  Identities=15%  Similarity=0.077  Sum_probs=87.3

Q ss_pred             HHHHHHHHHhcCCCEEEEecCCCCCcccCCCCH---HHHHHHHHhc-c--CCcEEEEeCCHhhHHHHHHcCCCEEEEecc
Q 015894          121 KVELIKLLVSSGLAVVEATSFVSPKWVPQLADA---KDVMAAIQNV-E--GARFPVLTPNLKGFEAAVAAGAKEVAIFAS  194 (398)
Q Consensus       121 k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~---~~v~~~i~~~-~--~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~  194 (398)
                      -.+.++.+.+.|++.|++..+..+.     ...   .++.+.++.+ .  ++.+.  +.  ..++.+.++|++.|++-. 
T Consensus        33 ~~~~~~~~~~~G~~~i~l~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~v~v~--v~--~~~~~a~~~gad~v~l~~-  102 (227)
T 2tps_A           33 PVTVVQKALKGGATLYQFREKGGDA-----LTGEARIKFAEKAQAACREAGVPFI--VN--DDVELALNLKADGIHIGQ-  102 (227)
T ss_dssp             HHHHHHHHHHHTCSEEEECCCSTTC-----CCHHHHHHHHHHHHHHHHHHTCCEE--EE--SCHHHHHHHTCSEEEECT-
T ss_pred             HHHHHHHHHHCCCCEEEEecCCCCH-----hHHHHHHHHHHHHHHHHHHcCCeEE--Ec--CHHHHHHHcCCCEEEECC-
Confidence            4678889999999999998653221     222   3444444422 1  33332  21  467889999999998732 


Q ss_pred             CchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE---ccCc
Q 015894          195 ASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL---GDTI  271 (398)
Q Consensus       195 ~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L---~DT~  271 (398)
                       .+.        .    +.      +..+..|. +...++.         .+++.    +..+.+.|+|.|.+   -||.
T Consensus       103 -~~~--------~----~~------~~~~~~g~-~~~~~s~---------~t~~e----~~~a~~~g~d~v~~~~v~~t~  149 (227)
T 2tps_A          103 -EDA--------N----AK------EVRAAIGD-MILGVSA---------HTMSE----VKQAEEDGADYVGLGPIYPTE  149 (227)
T ss_dssp             -TSS--------C----HH------HHHHHHTT-SEEEEEE---------CSHHH----HHHHHHHTCSEEEECCSSCCC
T ss_pred             -Ccc--------C----HH------HHHHhcCC-cEEEEec---------CCHHH----HHHHHhCCCCEEEECCCcCCC
Confidence             110        0    11      11223454 2222221         24444    33455789999986   3543


Q ss_pred             Cc---CCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894          272 GV---GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       272 G~---~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S  324 (398)
                      +-   ..|.. .+.++.+++..+..|+..    .-|....|+..++++|++.|++.
T Consensus       150 ~~~~~~~~~~-~~~l~~~~~~~~~~pvia----~GGI~~~nv~~~~~~Ga~gv~vg  200 (227)
T 2tps_A          150 TKKDTRAVQG-VSLIEAVRRQGISIPIVG----IGGITIDNAAPVIQAGADGVSMI  200 (227)
T ss_dssp             SSSSCCCCCT-THHHHHHHHTTCCCCEEE----ESSCCTTTSHHHHHTTCSEEEES
T ss_pred             CCCCCCCccC-HHHHHHHHHhCCCCCEEE----EcCCCHHHHHHHHHcCCCEEEEh
Confidence            21   22322 345566666554345544    24555667777888999988775

>3rys_A Adenosine deaminase 1; SGX, hydrolase; HET: ADE; 2.60A {Arthrobacter aurescens} SCOP: c.1.9.0

Probab=93.73  E-value=2.7  Score=41.09  Aligned_cols=132  Identities=14%  Similarity=0.167  Sum_probs=89.3

Q ss_pred             HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHH-hCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHH
Q 015894          178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAR-ELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQ  256 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak-~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~  256 (398)
                      ++.+.+-|+..+-++..  +. ....-|.+.++.++.+.+.++.++ +.|+.++.-+++.      -..+++...+.++.
T Consensus        87 l~~~~~dgV~y~Eir~~--P~-~~~~~gl~~~~~v~~v~~~~~~a~~~~gi~~~lI~~~~------R~~~~~~a~~~l~~  157 (343)
T 3rys_A           87 LERAAAGGVRHAEIMMD--PQ-AHTSRGVALETCVNGVANALATSEEDFGVSTLLIAAFL------RDMSEDSALEVLDQ  157 (343)
T ss_dssp             HHHHHHTTEEEEEEEEC--HH-HHHTTTCCHHHHHHHHHHHHTTHHHHHSCEEEEEEEEE------TTSCHHHHHHHHHH
T ss_pred             HHHHHHCCCEEEEEEec--HH-HhccCCCCHHHHHHHHHHHHHHHhhcCceeEEEEEEeC------CCCCHHHHHHHHHH
Confidence            34556778887776543  32 223457899999999888888775 5688877544431      12466777777776


Q ss_pred             HHhC--CCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHH-hCCCEEe
Q 015894          257 LYDM--GCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQ-MGISTVD  322 (398)
Q Consensus       257 l~~~--Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~-aGa~~VD  322 (398)
                      +.++  ++..|-|+-.-....|....+.++..++.  +.++.+|+..+.+  ..+...|+. .|+++|+
T Consensus       158 a~~~~~~vvG~dL~g~E~~~~~~~~~~~~~~A~~~--gl~~~~HagE~~~--~~~i~~al~~lg~~rIg  222 (343)
T 3rys_A          158 LLAMHAPIAGIGLDSAEVGNPPSKFERLYQRAAEA--GLRRIAHAGEEGP--ASYITEALDVLHVERID  222 (343)
T ss_dssp             HHHTTCCCCEEEEESCCTTCCGGGGHHHHHHHHHT--TCEEEEEESSSSC--HHHHHHHHHTSCCSEEE
T ss_pred             HHhCCCCEEEEecCCcccCCCHHHHHHHHHHHHHC--CCeEEEeeCCCCC--HHHHHHHHhcCCcceee
Confidence            6665  35556554333445778888888777653  4678999988765  467788997 9999875

>1olt_A Oxygen-independent coproporphyrinogen III oxidase; heme biosynthesis, decarboxylase, radical SAM enzyme, 4Fe- 4 cluster; HET: SAM; 2.07A {Escherichia coli} SCOP: c.1.28.2

Probab=93.67  E-value=0.56  Score=47.52  Aligned_cols=85  Identities=16%  Similarity=0.189  Sum_probs=60.7

Q ss_pred             HhhHHHHHHcCCCEEEEec-cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHH
Q 015894          175 LKGFEAAVAAGAKEVAIFA-SASESFSKSNINCTIEDSLIRYRDVALAARELSIP-VRGYLSCVVGCPVEGMVPPSKVAY  252 (398)
Q Consensus       175 ~~~ie~a~~~Gv~~v~i~~-~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~-v~~~l~~~fg~~~~~r~~~~~l~~  252 (398)
                      .+-++...++|+..|.+-+ +.+|-.. ..+|+.  ...+.+.++++.+++.|+. +.+.++  +|.|..   +.+.+.+
T Consensus       153 ~e~l~~L~~~G~~rislGvQS~~~~~l-~~i~R~--~~~~~~~~ai~~~r~~G~~~v~~dlI--~GlPge---t~e~~~~  224 (457)
T 1olt_A          153 LDVLDHLRAEGFNRLSMGVQDFNKEVQ-RLVNRE--QDEEFIFALLNHAREIGFTSTNIDLI--YGLPKQ---TPESFAF  224 (457)
T ss_dssp             THHHHHHHHTTCCEEEEEEECCCHHHH-HHHTCC--CCHHHHHHHHHHHHHTTCCSCEEEEE--ESCTTC---CHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEeeccCCHHHH-HHhCCC--CCHHHHHHHHHHHHHcCCCcEEEEEE--cCCCCC---CHHHHHH
Confidence            4567888899999888854 3444333 334432  2245566778899999998 877776  566654   5788899


Q ss_pred             HHHHHHhCCCCEEEE
Q 015894          253 VSKQLYDMGCSEISL  267 (398)
Q Consensus       253 ~a~~l~~~Gad~I~L  267 (398)
                      .++.+.++|++.|.+
T Consensus       225 tl~~~~~l~~~~i~~  239 (457)
T 1olt_A          225 TLKRVAELNPDRLSV  239 (457)
T ss_dssp             HHHHHHHHCCSEEEE
T ss_pred             HHHHHHhcCcCEEEe
Confidence            999999999998765

>3aal_A Probable endonuclease 4; endoiv, DNA repair, base excision repair, TIM barrel, DNA DA endonuclease, hydrolase, metal-binding; 1.60A {Geobacillus kaustophilus} PDB: 1xp3_A

Probab=93.62  E-value=4.6  Score=37.65  Aligned_cols=201  Identities=16%  Similarity=0.138  Sum_probs=97.8

Q ss_pred             HHHHHHHHHhcCCCEEEEecCCCCC-cc-cCC--CCHHHHHHHHHhccCC-cEEEEeC---C------H-----------
Q 015894          121 KVELIKLLVSSGLAVVEATSFVSPK-WV-PQL--ADAKDVMAAIQNVEGA-RFPVLTP---N------L-----------  175 (398)
Q Consensus       121 k~~ia~~L~~aGv~~IEvG~~~~~~-~~-p~~--~D~~~v~~~i~~~~~~-~l~~l~~---n------~-----------  175 (398)
                      -.+.++.+.++|++.||+... .|. |. +.+  .+.+++.+.++. .+. .+++..+   |      .           
T Consensus        20 ~~~~l~~~~~~G~~~vEl~~~-~~~~~~~~~~~~~~~~~~~~~l~~-~gl~~~~~h~~~~~nl~s~d~~~~r~~~~~~~~   97 (303)
T 3aal_A           20 LLAASEEAASYGANTFMIYTG-APQNTKRKSIEELNIEAGRQHMQA-HGIEEIVVHAPYIINIGNTTNLDTFSLGVDFLR   97 (303)
T ss_dssp             HHHHHHHHHHTTCSEEEEESS-CTTCCCCCCSGGGCHHHHHHHHHH-TTCCEEEEECCTTCCTTCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCEEEEcCC-CCCccCCCCCCHHHHHHHHHHHHH-cCCceEEEeccccccCCCCCcHHHHHHHHHHHH
Confidence            355677788999999999422 221 11 111  345555555543 233 3444332   1      1           


Q ss_pred             hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHh--CCCcEEEEEeeeecCCCCCCCCHHHHHHH
Q 015894          176 KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARE--LSIPVRGYLSCVVGCPVEGMVPPSKVAYV  253 (398)
Q Consensus       176 ~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~--~G~~v~~~l~~~fg~~~~~r~~~~~l~~~  253 (398)
                      +.++.|.+.|++.|.+.....       .+.+.++.++++.+.++.+-+  .|+.+  .+....+.+..--.+++.+.++
T Consensus        98 ~~i~~A~~lGa~~vv~h~g~~-------~~~~~~~~~~~~~~~l~~l~~~a~gv~l--~lEn~~~~~~~~~~t~~~~~~l  168 (303)
T 3aal_A           98 AEIERTEAIGAKQLVLHPGAH-------VGAGVEAGLRQIIRGLNEVLTREQNVQI--ALETMAGKGSECGRTFEELAYI  168 (303)
T ss_dssp             HHHHHHHHHTCSEEEECCEEC-------TTSCHHHHHHHHHHHHHHHCCSSCSCEE--EEECCCCCTTEECSSHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEECCCcC-------CCCCHHHHHHHHHHHHHHHHHhCCCCEE--EEecCCCCCCccCCCHHHHHHH
Confidence            113456667888776643311       122556666666665554432  24333  2332111000001256666665


Q ss_pred             HHHHHhCCC-CEEE-EccCcCc----CCHH-HHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHHHHHhCCCEEeecc
Q 015894          254 SKQLYDMGC-SEIS-LGDTIGV----GTPG-TVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILASLQMGISTVDSSV  325 (398)
Q Consensus       254 a~~l~~~Ga-d~I~-L~DT~G~----~~P~-~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv  325 (398)
                      ++.   .+- +.+. .-||.=.    ..|. .+.++++.+.+.+. +--.++|+||..+--          |.. .|   
T Consensus       169 i~~---v~~~~~vg~~lD~~H~~~~g~d~~~~~~~~l~~~~~~~g~~~i~~vHl~D~~~~~----------~~~-~d---  231 (303)
T 3aal_A          169 IDG---VAYNDKLSVCFDTCHTHDAGYDIVNDFDGVLEEFDRIIGLGRLKVLHINDSKNPR----------GSR-KD---  231 (303)
T ss_dssp             HHH---CTTGGGEEEEEEHHHHHHHTCCHHHHHHHHHHHHHHHTCGGGEEEEEECEESSCT----------TCC-CC---
T ss_pred             HHh---cCCCCCEEEEEEccCHhhhCCChhhhHHHHHHHHHHhcCcccEEEEEeeCCCCcC----------CCC-Cc---
Confidence            543   331 2222 2255311    1222 34555665544443 334778888875410          110 00   


Q ss_pred             ccCCCCCCCCCCCCCccHHHHHHHHHhCCC
Q 015894          326 SGLGGCPYAKGASGNVATEDVVYMLNGLGV  355 (398)
Q Consensus       326 ~GlGecp~a~graGNa~lE~vv~~L~~~Gi  355 (398)
                          + ...+ +.|..+.+.++..|++.|+
T Consensus       232 ----~-h~~~-G~G~id~~~~~~~L~~~gy  255 (303)
T 3aal_A          232 ----R-HENI-GFGHIGFAALNYIVHHPQL  255 (303)
T ss_dssp             ----C-EECT-TSSSSCHHHHHHHHTCTTC
T ss_pred             ----C-CCCC-CCCCCCHHHHHHHHhCcCc
Confidence                0 0011 3578999999999997655

>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*

Probab=93.60  E-value=1.2  Score=42.28  Aligned_cols=169  Identities=12%  Similarity=0.087  Sum_probs=89.3

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCc--ccCC-----------CCHH---HHHHHHHhccCCcEEEEeC-CH---
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKW--VPQL-----------ADAK---DVMAAIQNVEGARFPVLTP-NL---  175 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~--~p~~-----------~D~~---~v~~~i~~~~~~~l~~l~~-n~---  175 (398)
                      .+.+.-+++++.|.+. +|.||+|.|.+.+.  .|..           -..+   +.++.+|+.+++.+..+.. |.   
T Consensus        27 P~~~~~~~~~~~l~~~-aD~IElG~PfsdP~adGp~Iq~a~~~Al~~G~~~~~~~~~v~~ir~~~~~Pii~m~y~n~v~~  105 (271)
T 1ujp_A           27 PSREGFLQAVEEVLPY-ADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLA  105 (271)
T ss_dssp             SCHHHHHHHHHHHGGG-CSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECCHHHHHH
T ss_pred             CChHHHHHHHHHHHhc-CCEEEECCCCCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCEEEEecCcHHHH
Confidence            3556778899999999 99999998765321  0100           0112   2233334334666666653 41   


Q ss_pred             ----hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHH
Q 015894          176 ----KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVA  251 (398)
Q Consensus       176 ----~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~  251 (398)
                          +-++.+.++|++.+-+..-..                +...+.++.++++|+.... ++    .|   .++.+.+.
T Consensus       106 ~g~~~f~~~~~~aG~dGviv~Dl~~----------------ee~~~~~~~~~~~gl~~i~-li----ap---~s~~eri~  161 (271)
T 1ujp_A          106 WGPERFFGLFKQAGATGVILPDLPP----------------DEDPGLVRLAQEIGLETVF-LL----AP---TSTDARIA  161 (271)
T ss_dssp             HCHHHHHHHHHHHTCCEEECTTCCG----------------GGCHHHHHHHHHHTCEEEC-EE----CT---TCCHHHHH
T ss_pred             hhHHHHHHHHHHcCCCEEEecCCCH----------------HHHHHHHHHHHHcCCceEE-Ee----CC---CCCHHHHH
Confidence                235678889999776643321                2344667888999986431 22    12   13455544


Q ss_pred             HHHHHHHhCCCCEEEEc---cCcCcCC--HHHHHHHHHHHHhhCCCCeE--EEEeCCccchHHHHHHHHHHhCCCEE
Q 015894          252 YVSKQLYDMGCSEISLG---DTIGVGT--PGTVIPMLEAVLDAVPVDKL--AVHFHDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       252 ~~a~~l~~~Gad~I~L~---DT~G~~~--P~~v~~lv~~l~~~~p~~~l--~~H~Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                      .+++    .+...+++.   -++|.-+  +..+.++++.+++.. +.|+  ++-.|+      ....+.+ +||+.|
T Consensus       162 ~ia~----~~~gfiy~vs~~G~TG~~~~~~~~~~~~v~~vr~~~-~~Pv~vGfGI~t------~e~a~~~-~~ADgV  226 (271)
T 1ujp_A          162 TVVR----HATGFVYAVSVTGVTGMRERLPEEVKDLVRRIKART-ALPVAVGFGVSG------KATAAQA-AVADGV  226 (271)
T ss_dssp             HHHT----TCCSCEEEECC------------CCHHHHHHHHTTC-CSCEEEESCCCS------HHHHHHH-TTSSEE
T ss_pred             HHHH----hCCCCEEEEecCcccCCCCCCCccHHHHHHHHHhhc-CCCEEEEcCCCC------HHHHHHh-cCCCEE
Confidence            4443    333334333   2334333  344568899998865 3444  443332      2233334 888744

>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*

Probab=93.57  E-value=1.1  Score=44.32  Aligned_cols=140  Identities=13%  Similarity=0.044  Sum_probs=83.3

Q ss_pred             HHHHHcCCCEEEEeccC--------chH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-CC-cEEEEEeee-ecCCCCCCC
Q 015894          179 EAAVAAGAKEVAIFASA--------SES--FSKSNINCTIEDSLIRYRDVALAAREL-SI-PVRGYLSCV-VGCPVEGMV  245 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~~--------Sd~--~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~-~v~~~l~~~-fg~~~~~r~  245 (398)
                      ++|.++|.|.|.|-..-        |+.  .....+|-+.++-.+.+.++++.+|+. |. .|.+-++.. +.....+..
T Consensus       168 ~~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vris~~~~~~~~~~~~  247 (365)
T 2gou_A          168 LNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVRLAPLTTLNGTVDAD  247 (365)
T ss_dssp             HHHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEEECSSCCTTSCCCSS
T ss_pred             HHHHHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEEEccccccCCCCCCC
Confidence            35578999999985432        222  122344556666666677777777654 43 555444421 000011234


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhC-CCEEee
Q 015894          246 PPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMG-ISTVDS  323 (398)
Q Consensus       246 ~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aG-a~~VD~  323 (398)
                      +.+...++++.+.++|++.|.+....-...|..-.++++.+++.++. ||..=+--    -..++..+++.| |+.|-.
T Consensus       248 ~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~~~~~~~~i~~~~~i-Pvi~~Ggi----~~~~a~~~l~~g~aD~V~i  321 (365)
T 2gou_A          248 PILTYTAAAALLNKHRIVYLHIAEVDWDDAPDTPVSFKRALREAYQG-VLIYAGRY----NAEKAEQAINDGLADMIGF  321 (365)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCS-EEEEESSC----CHHHHHHHHHTTSCSEEEC
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEeCCCcCCCCCccHHHHHHHHHHCCC-cEEEeCCC----CHHHHHHHHHCCCcceehh
Confidence            67888999999999999999886531000111112567888888753 44332222    257788889998 887644

>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}

Probab=93.56  E-value=2.9  Score=40.09  Aligned_cols=177  Identities=15%  Similarity=0.144  Sum_probs=102.7

Q ss_pred             CCcEEEEeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHh-CCCcEEEEEeeeecCCCCC
Q 015894          165 GARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARE-LSIPVRGYLSCVVGCPVEG  243 (398)
Q Consensus       165 ~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~-~G~~v~~~l~~~fg~~~~~  243 (398)
                      +..+-+.+.+.+++..|.+.|+++|.+......      =|.|+..      ..++.+++ ..++|.+-|-     |..+
T Consensus        39 ~~~lEvc~~s~~~a~~A~~gGAdRIELc~~l~~------GGlTPS~------g~i~~a~~~~~ipV~vMIR-----PRgG  101 (287)
T 3iwp_A           39 GFLMEVCVDSVESAVNAERGGADRIELCSGLSE------GGTTPSM------GVLQVVKQSVQIPVFVMIR-----PRGG  101 (287)
T ss_dssp             CSEEEEEESSHHHHHHHHHHTCSEEEECBCGGG------TCBCCCH------HHHHHHHTTCCSCEEEECC-----SSSS
T ss_pred             CceEEEEeCCHHHHHHHHHhCCCEEEECCCCCC------CCCCCCH------HHHHHHHHhcCCCeEEEEe-----cCCC
Confidence            456667778999999999999999999855221      1223221      22344444 3566653222     3322


Q ss_pred             --CCCHHHHH---HHHHHHHhCCCCEEEEc--cCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccc-hHHHHHHHHHH
Q 015894          244 --MVPPSKVA---YVSKQLYDMGCSEISLG--DTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYG-QALSNILASLQ  315 (398)
Q Consensus       244 --r~~~~~l~---~~a~~l~~~Gad~I~L~--DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~G-lA~ANalaAl~  315 (398)
                        -|+.+++.   +-++.+.++|+|.|.+.  +.-|......+.++++...    ..++.||---|.= -.....-..++
T Consensus       102 dF~Ys~~E~~~M~~dI~~~~~~GAdGvVfG~L~~dg~iD~~~~~~Li~~a~----~l~vTFHRAFD~~~d~~~Ale~Li~  177 (287)
T 3iwp_A          102 DFLYSDREIEVMKADIRLAKLYGADGLVFGALTEDGHIDKELCMSLMAICR----PLPVTFHRAFDMVHDPMAALETLLT  177 (287)
T ss_dssp             CSCCCHHHHHHHHHHHHHHHHTTCSEEEECCBCTTSCBCHHHHHHHHHHHT----TSCEEECGGGGGCSCHHHHHHHHHH
T ss_pred             CcccCHHHHHHHHHHHHHHHHcCCCEEEEeeeCCCCCcCHHHHHHHHHHcC----CCcEEEECchhccCCHHHHHHHHHH
Confidence              35555444   45677888999999887  4567778888888888653    2457777663321 12333334445


Q ss_pred             hCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCC----CCccChHHHHHHHH
Q 015894          316 MGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGV----RTNVDIRKLMIAGD  369 (398)
Q Consensus       316 aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi----~t~iDl~~L~~~~~  369 (398)
                      .|+++|=+|=.   . |-|  -.|..-+.+++..... .+    .-||+.+.+.++.+
T Consensus       178 lGvdrILTSG~---~-~~a--~~Gl~~Lk~Lv~~a~~-rI~ImaGGGV~~~Ni~~l~~  228 (287)
T 3iwp_A          178 LGFERVLTSGC---D-SSA--LEGLPLIKRLIEQAKG-RIVVMPGGGITDRNLQRILE  228 (287)
T ss_dssp             HTCSEEEECTT---S-SST--TTTHHHHHHHHHHHTT-SSEEEECTTCCTTTHHHHHH
T ss_pred             cCCCEEECCCC---C-CCh--HHhHHHHHHHHHHhCC-CCEEEECCCcCHHHHHHHHH
Confidence            69999977422   1 111  2333334444333221 12    24688887777654

>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}

Probab=93.53  E-value=1.8  Score=40.49  Aligned_cols=101  Identities=15%  Similarity=0.074  Sum_probs=60.8

Q ss_pred             HHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCc-------------------CcCC
Q 015894          216 RDVALAARELSIP-VRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTI-------------------GVGT  275 (398)
Q Consensus       216 ~~~v~~ak~~G~~-v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~-------------------G~~~  275 (398)
                      .+..+.+|+.|-. +.+|++       .+..+.+...++++.+.+.|+|.|-|.=-.                   ..++
T Consensus         5 ~~~f~~~~~~~~~~~i~~i~-------~g~p~~~~~~~~~~~l~~~G~D~IElG~P~sdP~adgp~i~~a~~~al~~G~~   77 (262)
T 2ekc_A            5 SDKFTELKEKREKALVSYLM-------VGYPDYETSLKAFKEVLKNGTDILEIGFPFSDPVADGPTIQVAHEVALKNGIR   77 (262)
T ss_dssp             HHHHHHHHHHTBCEEEEEEE-------TTSSCHHHHHHHHHHHHHTTCSEEEEECCCSCCTTSCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhcCCceEEEEec-------CCCCChHHHHHHHHHHHHcCCCEEEECCCCCCcccccHHHHHHHHHHHHcCCC
Confidence            3444445544443 345554       233467888999999999999987763211                   1134


Q ss_pred             HHHHHHHHHHHHhhCCCCeEEEEeCCc--cchHHHH-HHHHHHhCCCEEee
Q 015894          276 PGTVIPMLEAVLDAVPVDKLAVHFHDT--YGQALSN-ILASLQMGISTVDS  323 (398)
Q Consensus       276 P~~v~~lv~~l~~~~p~~~l~~H~Hnd--~GlA~AN-alaAl~aGa~~VD~  323 (398)
                      ...+.++++.+++.+|++|+.+=.-.+  +..++.+ +-.+.++|++.+-.
T Consensus        78 ~~~~~~~v~~ir~~~~~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii  128 (262)
T 2ekc_A           78 FEDVLELSETLRKEFPDIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIV  128 (262)
T ss_dssp             HHHHHHHHHHHHHHCTTSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEEC
T ss_pred             HHHHHHHHHHHHhhcCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEE
Confidence            456778899999988777887721111  1111122 23466899996655

>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7

Probab=93.44  E-value=4.8  Score=38.70  Aligned_cols=146  Identities=16%  Similarity=0.208  Sum_probs=90.6

Q ss_pred             CcEEEEe-CCHhhHHHHHHcCCCEEEEec-cCc-hHHHhhh-cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCC
Q 015894          166 ARFPVLT-PNLKGFEAAVAAGAKEVAIFA-SAS-ESFSKSN-INCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPV  241 (398)
Q Consensus       166 ~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~-~~S-d~~~~~~-~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~  241 (398)
                      -.+.++. .+.-....+.++|++.|.+.. +++ -.+-..- ...|.++.+..++.+.+.   ..+.|.+.+      |.
T Consensus        22 ~~i~~~~a~D~~sA~l~e~aGf~ai~vs~~s~a~~~~G~pD~~~vt~~em~~~~~~I~r~---~~~PviaD~------d~   92 (298)
T 3eoo_A           22 QPLQVVGAITAYAAKMAEAVGFKAVYLSGGGVAANSLGIPDLGISTMDDVLVDANRITNA---TNLPLLVDI------DT   92 (298)
T ss_dssp             SSEEEEECSSHHHHHHHHHHTCSCEEECHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHH---CCSCEEEEC------TT
T ss_pred             CcEEEecCCCHHHHHHHHHcCCCEEEECcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhh---cCCeEEEEC------CC
Confidence            3455554 344444556678999888854 333 1111111 134788888888766654   345554322      33


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCEEEEccCcC-----------cCCHHHHHHHHHHHHhhC--CCCeEEEEeCCc----cc
Q 015894          242 EGMVPPSKVAYVSKQLYDMGCSEISLGDTIG-----------VGTPGTVIPMLEAVLDAV--PVDKLAVHFHDT----YG  304 (398)
Q Consensus       242 ~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G-----------~~~P~~v~~lv~~l~~~~--p~~~l~~H~Hnd----~G  304 (398)
                      .+ -+++.+.+.++.+.+.|+..|.|-|..+           +....+..+.|++.++.-  ++.-|-.-+-.-    +.
T Consensus        93 Gy-g~~~~v~~~v~~l~~aGaagv~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~ARTDa~~~~gld  171 (298)
T 3eoo_A           93 GW-GGAFNIARTIRSFIKAGVGAVHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMARTDAAAAEGID  171 (298)
T ss_dssp             CS-SSHHHHHHHHHHHHHTTCSEEEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTHHHHHHH
T ss_pred             CC-CCHHHHHHHHHHHHHhCCeEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEeehhhhhcCHH
Confidence            22 3788888999999999999999999986           334456666676666554  333333333221    22


Q ss_pred             hHHHHHHHHHHhCCCEE
Q 015894          305 QALSNILASLQMGISTV  321 (398)
Q Consensus       305 lA~ANalaAl~aGa~~V  321 (398)
                      -|+.-+.+-.+||||.|
T Consensus       172 eai~Ra~ay~~AGAD~i  188 (298)
T 3eoo_A          172 AAIERAIAYVEAGADMI  188 (298)
T ss_dssp             HHHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHhhHhcCCCEE
Confidence            37788888899999965

>1vs1_A 3-deoxy-7-phosphoheptulonate synthase; (beta/alpha)8 barrel, transferase; HET: PEP; 2.30A {Aeropyrum pernix}

Probab=93.43  E-value=4.1  Score=38.70  Aligned_cols=179  Identities=14%  Similarity=0.053  Sum_probs=111.2

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEecCCC---CCcccCCCCHHHHHHHHHhc---cCCcEEEEeCCHhhHHHHHHcCCCEEE
Q 015894          117 PAVVKVELIKLLVSSGLAVVEATSFVS---PKWVPQLADAKDVMAAIQNV---EGARFPVLTPNLKGFEAAVAAGAKEVA  190 (398)
Q Consensus       117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~---~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~~n~~~ie~a~~~Gv~~v~  190 (398)
                      +.++-+++++.+.++|.+.+-.+.+-.   +.....+ . ++-++.+++.   .+..+..=......++.+.+. ++.+.
T Consensus        50 ~~e~a~~~a~~~k~~ga~~~k~~~~kprts~~~f~g~-g-~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~-vd~~k  126 (276)
T 1vs1_A           50 SWEQVREAALAVKEAGAHMLRGGAFKPRTSPYSFQGL-G-LEGLKLLRRAGDEAGLPVVTEVLDPRHVETVSRY-ADMLQ  126 (276)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEECBSSCCCSSTTSCCCC-T-HHHHHHHHHHHHHHTCCEEEECCCGGGHHHHHHH-CSEEE
T ss_pred             CHHHHHHHHHHHHHhCCCEEEeEEEeCCCChhhhcCC-C-HHHHHHHHHHHHHcCCcEEEecCCHHHHHHHHHh-CCeEE
Confidence            788999999999999999988876532   2111011 1 2333444422   244443333577788888888 89998


Q ss_pred             EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC-CCHHHHHHHHHHHHhCCCCEEEEcc
Q 015894          191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGM-VPPSKVAYVSKQLYDMGCSEISLGD  269 (398)
Q Consensus       191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r-~~~~~l~~~a~~l~~~Gad~I~L~D  269 (398)
                      |-...-.          ..       ..++++-+.|.+|.  ++       .+. .+++.+...++.+...|.+.+.|+-
T Consensus       127 Igs~~~~----------n~-------~ll~~~a~~~kPV~--lk-------~G~~~t~~ei~~Ave~i~~~Gn~~i~L~~  180 (276)
T 1vs1_A          127 IGARNMQ----------NF-------PLLREVGRSGKPVL--LK-------RGFGNTVEELLAAAEYILLEGNWQVVLVE  180 (276)
T ss_dssp             ECGGGTT----------CH-------HHHHHHHHHTCCEE--EE-------CCTTCCHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             ECccccc----------CH-------HHHHHHHccCCeEE--Ec-------CCCCCCHHHHHHHHHHHHHcCCCeEEEEe
Confidence            8543211          11       23344446688875  33       233 3899999999999999987777766


Q ss_pred             ----CcCcCCHHHHHHH-HHHHHhhCCCCeEE-EEeC--CccchHHHHHHHHHHhCCC--EEeecc
Q 015894          270 ----TIGVGTPGTVIPM-LEAVLDAVPVDKLA-VHFH--DTYGQALSNILASLQMGIS--TVDSSV  325 (398)
Q Consensus       270 ----T~G~~~P~~v~~l-v~~l~~~~p~~~l~-~H~H--nd~GlA~ANalaAl~aGa~--~VD~Sv  325 (398)
                          |.-...+..+.-. +..+++.+. .||. .=.|  ...-+...-+++|+.+||+  +|+.=+
T Consensus       181 Rg~~~yp~y~~~~vdl~~i~~lk~~~~-lpVi~dssH~~g~~~~~~~~~~aAva~Ga~Gl~IE~H~  245 (276)
T 1vs1_A          181 RGIRTFEPSTRFTLDVAAVAVLKEATH-LPVIVDPSHPAGRRSLVPALAKAGLAAGADGLIVEVHP  245 (276)
T ss_dssp             CCBCCSCCSSSSBCBHHHHHHHHHHBS-SCEEECCHHHHCSGGGHHHHHHHHHHTTCSEEEEEBCS
T ss_pred             CCcCCCCCcCcchhCHHHHHHHHHHhC-CCEEEeCCCCCCccchHHHHHHHHHHcCCCEEEEEecC
Confidence                2212234444443 667777653 3564 3333  3333457778889999999  887654

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=93.40  E-value=0.7  Score=45.79  Aligned_cols=72  Identities=10%  Similarity=0.082  Sum_probs=53.9

Q ss_pred             HHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEE-EeCCccchHHHHHHHHHHhCCCEEeeccc
Q 015894          248 SKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAV-HFHDTYGQALSNILASLQMGISTVDSSVS  326 (398)
Q Consensus       248 ~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~-H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~  326 (398)
                      +...+.++++.++|+|.|.+ |+.- ..+..+.+.|+.+++.+|+++|.. -.     .....+..++++|||.|.+++.
T Consensus        99 ~~~~e~~~~a~~aGvdvI~i-d~a~-G~~~~~~e~I~~ir~~~~~~~Vi~G~V-----~T~e~A~~a~~aGaD~I~Vg~g  171 (361)
T 3r2g_A           99 ENELQRAEALRDAGADFFCV-DVAH-AHAKYVGKTLKSLRQLLGSRCIMAGNV-----ATYAGADYLASCGADIIKAGIG  171 (361)
T ss_dssp             HHHHHHHHHHHHTTCCEEEE-ECSC-CSSHHHHHHHHHHHHHHTTCEEEEEEE-----CSHHHHHHHHHTTCSEEEECCS
T ss_pred             HHHHHHHHHHHHcCCCEEEE-eCCC-CCcHhHHHHHHHHHHhcCCCeEEEcCc-----CCHHHHHHHHHcCCCEEEEcCC
Confidence            56677899999999997766 4322 246778889999999888766665 22     2346688899999999998644

>3mcm_A 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase/dihydropteroate...; folate, TIM barrel, synthase, HPPK, DHPS; 2.20A {Francisella tularensis subsp} PDB: 3mcn_A* 3mco_A*

Probab=93.36  E-value=1.2  Score=45.28  Aligned_cols=154  Identities=11%  Similarity=0.091  Sum_probs=85.7

Q ss_pred             CCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCC-CCCcccCCCCHHHHHHH---HHhc-------
Q 015894           95 PGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFV-SPKWVPQLADAKDVMAA---IQNV-------  163 (398)
Q Consensus        95 p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~-~~~~~p~~~D~~~v~~~---i~~~-------  163 (398)
                      |.=+-|+-+|. |-..--|  ++.+..++.++.+.+.|.+.|++|.-. .|...+ ....+|+.+.   ++.+       
T Consensus       191 ~~vMGIlNvTP-DSFsDgg--~~~~~al~~A~~mv~~GAdIIDIGgeSTrPGa~~-Vs~~EE~~Rv~pvI~~l~~~~~~~  266 (442)
T 3mcm_A          191 TIRMGIVNLSN-QSFSDGN--FDDNQRKLNLDELIQSGAEIIDIGAESTKPDAKP-ISIEEEFNKLNEFLEYFKSQLANL  266 (442)
T ss_dssp             SEEEEEEECSS-CC-CCCS--SCCCHHHHHHHHHHHHTCSEEEEECCCCCC-----CCHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             ceEEEEEeCCC-CCCCCCC--CCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCC-CCHHHHHHHHHHHHHHHHhhcccc
Confidence            33355777776 4333323  677888999999999999999999643 232211 1122333332   2222       


Q ss_pred             c-CCcEEEEeCCHhhHHHHHH--cCCCE-EEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecC
Q 015894          164 E-GARFPVLTPNLKGFEAAVA--AGAKE-VAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGC  239 (398)
Q Consensus       164 ~-~~~l~~l~~n~~~ie~a~~--~Gv~~-v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~  239 (398)
                      + ++.+++=+.+.+-+++|++  +|++. |.=....                  ...++.+.+++.|..+.  +|..-|.
T Consensus       267 ~~~vpISIDT~~~~VaeaAL~~~aGa~i~INDVsg~------------------~d~~m~~v~a~~g~~vV--lMh~~G~  326 (442)
T 3mcm_A          267 IYKPLVSIDTRKLEVMQKILAKHHDIIWMINDVECN------------------NIEQKAQLIAKYNKKYV--IIHNLGI  326 (442)
T ss_dssp             SSCCEEEEECCCHHHHHHHHHHHGGGCCEEEECCCT------------------THHHHHHHHHHHTCEEE--EECC---
T ss_pred             CCCCeEEEeCCCHHHHHHHHhhCCCCCEEEEcCCCC------------------CChHHHHHHHHhCCeEE--EECCCCC
Confidence            1 4444444567788899999  99987 6532111                  01245667778887765  4544343


Q ss_pred             CCCCCC---------CHHHHHHHHHHHHhCCCC--EEEEccC-cCc
Q 015894          240 PVEGMV---------PPSKVAYVSKQLYDMGCS--EISLGDT-IGV  273 (398)
Q Consensus       240 ~~~~r~---------~~~~l~~~a~~l~~~Gad--~I~L~DT-~G~  273 (398)
                      |..-..         =.+++.+.++.+.++|++  .|.| |- +|.
T Consensus       327 P~tmq~~~y~dvv~ev~~~l~~~i~~a~~aGI~~~~Iil-DPGiGF  371 (442)
T 3mcm_A          327 TDRNQYLDKENAIDNVCDYIEQKKQILLKHGIAQQNIYF-DIGFGF  371 (442)
T ss_dssp             -------------CTHHHHHHHHHHHHHHHTCCGGGEEE-ECCCC-
T ss_pred             CccccccCcccHHHHHHHHHHHHHHHHHHcCCCHHHEEE-eCCCCC
Confidence            321100         035667778888899983  4554 43 443

>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1

Probab=93.31  E-value=0.67  Score=43.68  Aligned_cols=149  Identities=14%  Similarity=0.045  Sum_probs=100.4

Q ss_pred             HHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecC-CCCCCCCHHHHHHHHHHHHhC
Q 015894          182 VAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGC-PVEGMVPPSKVAYVSKQLYDM  260 (398)
Q Consensus       182 ~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~-~~~~r~~~~~l~~~a~~l~~~  260 (398)
                      ...-+|.+-+....|-.+.        +   +.+++.++.++++|+.|.      +|. ..+.......+.++.+.+.++
T Consensus        35 ~g~yID~lKfg~Gt~~l~~--------~---~~l~eki~l~~~~gV~v~------~GGTl~E~~~~qg~~~~yl~~~k~l   97 (251)
T 1qwg_A           35 CGDYIDFVKFGWGTSAVID--------R---DVVKEKINYYKDWGIKVY------PGGTLFEYAYSKGKFDEFLNECEKL   97 (251)
T ss_dssp             HGGGCSEEEECTTGGGGSC--------H---HHHHHHHHHHHTTTCEEE------ECHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhhcceEEecCceeeecC--------H---HHHHHHHHHHHHcCCeEE------CCcHHHHHHHHcCcHHHHHHHHHHc
Confidence            3345899999877766542        2   235677999999999875      221 011001112445567778899


Q ss_pred             CCCEEEEccCcCcCCHHHHHHHHHHHHhh-CCCCeEEEEe-------CCccchHHHHHHHHHHhCCCEE--eeccc----
Q 015894          261 GCSEISLGDTIGVGTPGTVIPMLEAVLDA-VPVDKLAVHF-------HDTYGQALSNILASLQMGISTV--DSSVS----  326 (398)
Q Consensus       261 Gad~I~L~DT~G~~~P~~v~~lv~~l~~~-~p~~~l~~H~-------Hnd~GlA~ANalaAl~aGa~~V--D~Sv~----  326 (398)
                      |.+.|-|.|-+--+.+.+-.++|+.+++. +- +..++..       --+...-+..+...++|||+.|  ++-=.    
T Consensus        98 Gf~~iEiS~G~i~l~~~~~~~~I~~~~~~G~~-v~~EvG~k~~~~~~~~~~~~~I~~~~~~LeAGA~~ViiEarEsG~~i  176 (251)
T 1qwg_A           98 GFEAVEISDGSSDISLEERNNAIKRAKDNGFM-VLTEVGKKMPDKDKQLTIDDRIKLINFDLDAGADYVIIEGRESGKGK  176 (251)
T ss_dssp             TCCEEEECCSSSCCCHHHHHHHHHHHHHTTCE-EEEEECCSSHHHHTTCCHHHHHHHHHHHHHHTCSEEEECCTTTCCSS
T ss_pred             CCCEEEECCCcccCCHHHHHHHHHHHHHCCCE-EeeeccccCCcccCCCCHHHHHHHHHHHHHCCCcEEEEeeecccCCc
Confidence            99999999999999999999999999887 32 1233322       2345666788888999999965  44322    


Q ss_pred             cCCCCCCCCCCCCCccHHHHHHHHHhCC
Q 015894          327 GLGGCPYAKGASGNVATEDVVYMLNGLG  354 (398)
Q Consensus       327 GlGecp~a~graGNa~lE~vv~~L~~~G  354 (398)
                      |+=+      ..|+.-...+-..+...+
T Consensus       177 Gi~~------~~g~~r~d~v~~i~~~l~  198 (251)
T 1qwg_A          177 GLFD------KEGKVKENELDVLAKNVD  198 (251)
T ss_dssp             TTBC------TTSCBCHHHHHHHHTTSC
T ss_pred             ccCC------CCCCCcHHHHHHHHHhCC
Confidence            5556      788888887765554443

>1vr6_A Phospho-2-dehydro-3-deoxyheptonate aldolase; TM0343, structural genomics, joint center for STRU genomics, JCSG, protein structure initiative; 1.92A {Thermotoga maritima} SCOP: c.1.10.4 PDB: 1rzm_A* 3pg9_A* 3pg8_A*

Probab=93.17  E-value=4.1  Score=40.14  Aligned_cols=180  Identities=14%  Similarity=0.113  Sum_probs=111.6

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEecCCC---CCcccCCCCHHHHHHHHHhc---cCCcEEEEeCCHhhHHHHHHcCCCEEE
Q 015894          117 PAVVKVELIKLLVSSGLAVVEATSFVS---PKWVPQLADAKDVMAAIQNV---EGARFPVLTPNLKGFEAAVAAGAKEVA  190 (398)
Q Consensus       117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~---~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~~n~~~ie~a~~~Gv~~v~  190 (398)
                      +.++-+++++.+.++|.+.+-.+.|-.   |...-.+ . ++-++.+++.   .+..+..=......++.+.+. ++.+.
T Consensus       118 s~e~a~~~a~~~k~aGa~~vr~q~fKprTs~~~f~gl-g-~egl~~l~~~~~e~Gl~~~te~~d~~~~~~l~~~-vd~lk  194 (350)
T 1vr6_A          118 GREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGL-G-EKGLEYLREAADKYGMYVVTEALGEDDLPKVAEY-ADIIQ  194 (350)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEECBSCCCCCSTTSCCCC-T-HHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHH-CSEEE
T ss_pred             CHHHHHHHHHHHHHcCCCeeeeeEEeCCCChHhhcCC-C-HHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHHh-CCEEE
Confidence            788999999999999999988876532   2111111 1 2333444322   244433333477888888888 89998


Q ss_pred             EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC-CCHHHHHHHHHHHHhCCCCEEEEcc
Q 015894          191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGM-VPPSKVAYVSKQLYDMGCSEISLGD  269 (398)
Q Consensus       191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r-~~~~~l~~~a~~l~~~Gad~I~L~D  269 (398)
                      |-...-.          .   .    .+++++-+.|.+|-  ++       .+. .+++.+...++.+...|.+.+.||.
T Consensus       195 IgAr~~~----------n---~----~LL~~va~~~kPVi--lk-------~G~~~tl~ei~~Ave~i~~~GN~~viLce  248 (350)
T 1vr6_A          195 IGARNAQ----------N---F----RLLSKAGSYNKPVL--LK-------RGFMNTIEEFLLSAEYIANSGNTKIILCE  248 (350)
T ss_dssp             ECGGGTT----------C---H----HHHHHHHTTCSCEE--EE-------CCTTCCHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             ECccccc----------C---H----HHHHHHHccCCcEE--Ec-------CCCCCCHHHHHHHHHHHHHCCCCeEEEEe
Confidence            8543211          1   1    22344446788875  33       233 3889999999999999998888875


Q ss_pred             CcC--c--CCHHHHHH-HHHHHHhhCCCCeEEE---EeCCccchHHHHHHHHHHhCCC--EEeeccc
Q 015894          270 TIG--V--GTPGTVIP-MLEAVLDAVPVDKLAV---HFHDTYGQALSNILASLQMGIS--TVDSSVS  326 (398)
Q Consensus       270 T~G--~--~~P~~v~~-lv~~l~~~~p~~~l~~---H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~  326 (398)
                      --+  +  -++..+.- .+..+++.+. .|+.+   |.=.+.-+...-+++|+.+||+  +|+.=+.
T Consensus       249 RG~~typ~~~~~~vdl~ai~~lk~~~~-lpVi~dssHs~G~~~~v~~~a~AAvA~GA~Gl~IE~H~~  314 (350)
T 1vr6_A          249 RGIRTFEKATRNTLDISAVPIIRKESH-LPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHPE  314 (350)
T ss_dssp             CCBCCSCCSSSSBCCTTHHHHHHHHBS-SCEEECHHHHHCSGGGHHHHHHHHHHHTCSEEEEEBCSC
T ss_pred             CCCCCCCCcChhhhhHHHHHHHHHhhC-CCEEEeCCCCCcccchHHHHHHHHHHhCCCEEEEEecCC
Confidence            222  1  12233222 3456776643 45655   5544444567788899999999  8876543

>2hk0_A D-psicose 3-epimerase; TIM-barrel, isomerase; 2.00A {Agrobacterium tumefaciens} PDB: 2hk1_A*

Probab=93.12  E-value=3  Score=39.05  Aligned_cols=209  Identities=9%  Similarity=0.031  Sum_probs=105.4

Q ss_pred             ccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC---
Q 015894           97 FVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP---  173 (398)
Q Consensus        97 ~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~---  173 (398)
                      ++-+.-.++++...    ..+.+   + ++.+.++|++.||+.......+.+  .+.+++.+.++. .++++.+.+.   
T Consensus        22 klg~~~~~~~~~~~----~~~l~---~-l~~~~~~G~~~vEl~~~~~~~~~~--~~~~~l~~~l~~-~gl~i~~~~~~~~   90 (309)
T 2hk0_A           22 KHGIYYSYWEHEWS----AKFGP---Y-IEKVAKLGFDIIEVAAHHINEYSD--AELATIRKSAKD-NGIILTAGIGPSK   90 (309)
T ss_dssp             EEEEEGGGGCSCTT----SCSHH---H-HHHHHHTTCSEEEEEHHHHTTSCH--HHHHHHHHHHHH-TTCEEEEECCCCS
T ss_pred             eeEEehhhcccccc----cccHH---H-HHHHHHhCCCEEEeccCCccccch--hhHHHHHHHHHH-cCCeEEEecCCCC
Confidence            45566556654211    12333   4 667788999999998642111100  123334444432 3455554321   


Q ss_pred             -------CH-----------hhHHHHHHcCCCEEEEeccCchHHHhhhcCC-CH----HHHHHHHHHHHHHHHhCCCcEE
Q 015894          174 -------NL-----------KGFEAAVAAGAKEVAIFASASESFSKSNINC-TI----EDSLIRYRDVALAARELSIPVR  230 (398)
Q Consensus       174 -------n~-----------~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~-s~----~~~l~~~~~~v~~ak~~G~~v~  230 (398)
                             +.           +.++.|.+.|++.|.+... +.. -...-.. +.    +...+.+.++.++|++.|+.+.
T Consensus        91 ~~~l~~~d~~~r~~~~~~~~~~i~~A~~lG~~~v~~~~~-~~~-g~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~  168 (309)
T 2hk0_A           91 TKNLSSEDAAVRAAGKAFFERTLSNVAKLDIHTIGGALH-SYW-PIDYSQPVDKAGDYARGVEGINGIADFANDLGINLC  168 (309)
T ss_dssp             SSCSSCSCHHHHHHHHHHHHHHHHHHHHTTCCEEEECTT-SCS-SCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEeecc-ccc-cccCCCcCChHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence                   11           1245677889998875431 000 0000011 33    3445666777888999998764


Q ss_pred             EEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE-EEccCcCcCC-HHHHHHHHHHHHhhCCCCeEEEEeCCccchHHH
Q 015894          231 GYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEI-SLGDTIGVGT-PGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALS  308 (398)
Q Consensus       231 ~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I-~L~DT~G~~~-P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~A  308 (398)
                        +...-..+...-.+++.+.++++.+   +.+.+ ..-|+.=... -.+..+.++.+.   + --.++|+||...    
T Consensus       169 --lEn~~~~~~~~~~~~~~~~~l~~~v---~~~~vg~~~D~~H~~~~g~d~~~~l~~~~---~-~i~~vHl~D~~r----  235 (309)
T 2hk0_A          169 --IEVLNRFENHVLNTAAEGVAFVKDV---GKNNVKVMLDTFHMNIEEDSFGDAIRTAG---P-LLGHFHTGESNR----  235 (309)
T ss_dssp             --EECCCTTTCSSCCSHHHHHHHHHHH---TCTTEEEEEEHHHHHHHCSCHHHHHHHHG---G-GEEEEEECCTTS----
T ss_pred             --EeecccccccccCCHHHHHHHHHHc---CCCCeEEEEehhhHhhcCcCHHHHHHHHH---h-hEEEEEeCCCCC----
Confidence              3211000111224677777766544   33222 2335521111 012233333332   2 247899998621    


Q ss_pred             HHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCC
Q 015894          309 NILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVR  356 (398)
Q Consensus       309 NalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~  356 (398)
                                            +  .+ +.|..+...++..|++.|++
T Consensus       236 ----------------------~--~~-G~G~id~~~~~~~L~~~gy~  258 (309)
T 2hk0_A          236 ----------------------R--VP-GKGRMPWHEIGLALRDINYT  258 (309)
T ss_dssp             ----------------------C--CT-TSSCCCHHHHHHHHHHTTCC
T ss_pred             ----------------------C--CC-cCCccCHHHHHHHHHHcCCC
Confidence                                  0  12 36789999999999987664

>2isw_A Putative fructose-1,6-bisphosphate aldolase; class II fructose-1,6-bisphosphate aldolase, glycolytic pathway, giardia lamblia, drug target; HET: PGH; 1.75A {Giardia intestinalis} PDB: 2isv_A* 3ohi_A* 3gay_A* 3gak_A* 3gb6_A*

Probab=93.07  E-value=0.61  Score=45.54  Aligned_cols=119  Identities=18%  Similarity=0.230  Sum_probs=84.3

Q ss_pred             HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEccC-cCcCCHHHHHHHHHHHHhhCCC
Q 015894          215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGDT-IGVGTPGTVIPMLEAVLDAVPV  292 (398)
Q Consensus       215 ~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~DT-~G~~~P~~v~~lv~~l~~~~p~  292 (398)
                      ++++.+.|++.|+-|- .+..         .+.+.+..+.+.+.+.+... |.+.-. ..++....+..++....+.++.
T Consensus         6 ~~~ll~~A~~~~yAV~-AfNv---------~n~e~~~Ail~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~aa~~~~~   75 (323)
T 2isw_A            6 LRQMLGEARKHKYGVG-AFNV---------NNMEQIQGIMKAVVQLKSPVILQCSRGALKYSDMIYLKKLCEAALEKHPD   75 (323)
T ss_dssp             HHHHHHHHHHTTCCEE-EEEC---------CSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHTTTHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHCCceEE-EEee---------CCHHHHHHHHHHHHHhCCCEEEECChhHHHhCCHHHHHHHHHHHHHhcCC
Confidence            3577889999999874 3331         46788999999999999874 444332 2233356677788888877666


Q ss_pred             CeEEEEeCCccchHHHHHHHHHHhCCC--EEeeccccCCCCCCCCCCCCCc-cHHHHHHHHHhCC
Q 015894          293 DKLAVHFHDTYGQALSNILASLQMGIS--TVDSSVSGLGGCPYAKGASGNV-ATEDVVYMLNGLG  354 (398)
Q Consensus       293 ~~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGecp~a~graGNa-~lE~vv~~L~~~G  354 (398)
                      +|+.+|.  |.|.....+..|+++|.+  ++|+|-..+-+         |. -|.+++...+..|
T Consensus        76 VPValHl--DHg~~~e~i~~ai~~GFtSVMiDgS~~p~eE---------Ni~~Tk~vv~~ah~~g  129 (323)
T 2isw_A           76 IPICIHL--DHGDTLESVKMAIDLGFSSVMIDASHHPFDE---------NVRITKEVVAYAHARS  129 (323)
T ss_dssp             SCEEEEE--EEECSHHHHHHHHHTTCSEEEECCTTSCHHH---------HHHHHHHHHHHHHTTT
T ss_pred             CcEEEEC--CCCCCHHHHHHHHHcCCCeEEecCCCCCHHH---------HHHHHHHHHHHHHHcC
Confidence            7777765  556667889999999998  67999877666         55 4566666665443

>2a4a_A Deoxyribose-phosphate aldolase; lyase, TIM beta/alpha barrel, DEOC, DERA, structur genomics, structural genomics consortium, SGC; 1.84A {Plasmodium yoelii yoelii} SCOP: c.1.10.1

Probab=93.05  E-value=2.1  Score=41.00  Aligned_cols=109  Identities=18%  Similarity=0.182  Sum_probs=70.9

Q ss_pred             EeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCC---HH---HHHHHHHHHHhhCCCCe----EEEEeCCc
Q 015894          233 LSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGT---PG---TVIPMLEAVLDAVPVDK----LAVHFHDT  302 (398)
Q Consensus       233 l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~---P~---~v~~lv~~l~~~~p~~~----l~~H~Hnd  302 (398)
                      ++.+.|.|.. ..+.+.-..-++.+.+.||+.|-+.=-.|.+.   -.   .+.+-+..+++..++.+    |+.-.=+|
T Consensus        92 v~tVigFP~G-~~~~~~Kv~E~~~Av~~GAdEIDmVinig~lksg~~~~~~~v~~eI~~v~~a~~~~~lKVIlEt~~L~d  170 (281)
T 2a4a_A           92 IACVINFPYG-TDSMEKVLNDTEKALDDGADEIDLVINYKKIIENTDEGLKEATKLTQSVKKLLTNKILKVIIEVGELKT  170 (281)
T ss_dssp             EEEEESTTTC-CSCHHHHHHHHHHHHHHTCSEEEEECCHHHHHHSHHHHHHHHHHHHHHHHTTCTTSEEEEECCHHHHCS
T ss_pred             EEEEeCCCCC-CCCHHHHHHHHHHHHHcCCCEEEEecchHhhhCCChhHHHHHHHHHHHHHHHhcCCceEEEEecccCCc
Confidence            3344556754 34555444557788889999998887777443   45   67788888887665432    22222244


Q ss_pred             cchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q 015894          303 YGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLN  351 (398)
Q Consensus       303 ~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~  351 (398)
                      ...=...+..|+++|||+|=+|-+ .        .+|++.+|++..+.+
T Consensus       171 ~e~i~~A~~ia~eaGADfVKTSTG-f--------~~~gAT~edv~lm~~  210 (281)
T 2a4a_A          171 EDLIIKTTLAVLNGNADFIKTSTG-K--------VQINATPSSVEYIIK  210 (281)
T ss_dssp             HHHHHHHHHHHHTTTCSEEECCCS-C--------SSCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCEEEeCCC-C--------CCCCCCHHHHHHHHH
Confidence            443345677889999999999862 2        346788888776664

>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*

Probab=93.03  E-value=1.3  Score=40.39  Aligned_cols=173  Identities=16%  Similarity=0.126  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHhcCCCEEEEe----cCCCCCcccCCCCHHHHHHHHHhccCCcEEE--EeCCHhhHHHHHHcCCCEEEEec
Q 015894          120 VKVELIKLLVSSGLAVVEAT----SFVSPKWVPQLADAKDVMAAIQNVEGARFPV--LTPNLKGFEAAVAAGAKEVAIFA  193 (398)
Q Consensus       120 ~k~~ia~~L~~aGv~~IEvG----~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~n~~~ie~a~~~Gv~~v~i~~  193 (398)
                      +-.++++.+.+.|++.|.+-    .+..     .. .. +.++.+++..+..+.+  .+++.++++.++++|++.|.+-.
T Consensus        32 d~~~~a~~~~~~Gad~i~v~~~d~~~~~-----~~-~~-~~i~~i~~~~~ipv~v~ggi~~~~~~~~~l~~Gad~V~lg~  104 (244)
T 2y88_A           32 SAVDAALGWQRDGAEWIHLVDLDAAFGR-----GS-NH-ELLAEVVGKLDVQVELSGGIRDDESLAAALATGCARVNVGT  104 (244)
T ss_dssp             EHHHHHHHHHHTTCSEEEEEEHHHHTTS-----CC-CH-HHHHHHHHHCSSEEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred             CHHHHHHHHHHcCCCEEEEEcCcccccC-----CC-hH-HHHHHHHHhcCCcEEEECCCCCHHHHHHHHHcCCCEEEECc
Confidence            45788999999999999983    3321     11 22 4555555434554443  23677889999999999998743


Q ss_pred             cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeee---cCCCC--CC--CCHHHHHHHHHHHHhCCCCEEE
Q 015894          194 SASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVV---GCPVE--GM--VPPSKVAYVSKQLYDMGCSEIS  266 (398)
Q Consensus       194 ~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~f---g~~~~--~r--~~~~~l~~~a~~l~~~Gad~I~  266 (398)
                      .                .+.+...+.+..++.|..+...+..-.   +....  +.  .+. ...+.++.+.++|++.|.
T Consensus       105 ~----------------~l~~p~~~~~~~~~~g~~~~~~ld~~~~~~~~~v~~~g~~~~~~-~~~e~~~~~~~~G~~~i~  167 (244)
T 2y88_A          105 A----------------ALENPQWCARVIGEHGDQVAVGLDVQIIDGEHRLRGRGWETDGG-DLWDVLERLDSEGCSRFV  167 (244)
T ss_dssp             H----------------HHHCHHHHHHHHHHHGGGEEEEEEEEEETTEEEEEEGGGTEEEE-EHHHHHHHHHHTTCCCEE
T ss_pred             h----------------HhhChHHHHHHHHHcCCCEEEEEeccccCCCCEEEECCccCCCC-CHHHHHHHHHhCCCCEEE
Confidence            2                112111223333444433322222110   00000  00  011 345667778889999887


Q ss_pred             EccCc--CcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHH-HHHHHHHHh---CCCEEe
Q 015894          267 LGDTI--GVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQAL-SNILASLQM---GISTVD  322 (398)
Q Consensus       267 L~DT~--G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~-ANalaAl~a---Ga~~VD  322 (398)
                      +-+..  |...+. -.++++.+++.. .+|+..=    -|... .++..++++   ||+.|-
T Consensus       168 ~~~~~~~~~~~g~-~~~~~~~l~~~~-~ipvia~----GGI~~~~d~~~~~~~~~~Gad~v~  223 (244)
T 2y88_A          168 VTDITKDGTLGGP-NLDLLAGVADRT-DAPVIAS----GGVSSLDDLRAIATLTHRGVEGAI  223 (244)
T ss_dssp             EEETTTTTTTSCC-CHHHHHHHHTTC-SSCEEEE----SCCCSHHHHHHHHTTGGGTEEEEE
T ss_pred             EEecCCccccCCC-CHHHHHHHHHhC-CCCEEEE----CCCCCHHHHHHHHhhccCCCCEEE
Confidence            75522  222222 234566666543 2344442    34443 677777777   876543

>3fok_A Uncharacterized protein CGL0159; CGL0159 ,brevibacterium flavum., structural genomics, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum}

Probab=93.00  E-value=0.42  Score=46.30  Aligned_cols=175  Identities=11%  Similarity=0.050  Sum_probs=109.0

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccC-CcEEEEeC---------C----H-hhHHHHH
Q 015894          118 AVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEG-ARFPVLTP---------N----L-KGFEAAV  182 (398)
Q Consensus       118 ~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~-~~l~~l~~---------n----~-~~ie~a~  182 (398)
                      .+...++...+.+-|++.+-..-..          .++ +.++-.+.+ +.+..+.+         +    . -++|.++
T Consensus        70 ~~~l~~~~~~~~~~Gvdavl~~~gi----------~~d-~~Li~~L~~~tv~gs~~~ggl~g~~~~~d~~~~~~sVe~Av  138 (307)
T 3fok_A           70 YELLERMAIALSRPGVDGVLGTPDI----------IDD-LAALGLLDDKIVVGSMNRGGLRGASFEMDDRYTGYNVSSMV  138 (307)
T ss_dssp             HHHHHHHHHHHHSTTCCEEEECHHH----------HHH-HHHTTCCTTCEEEEECCCCSCTTCTTTTSCCCCSCCHHHHH
T ss_pred             HHHHHHHHHHHhccCCCEEEECcch----------hhc-ccceEEecCcccccccCccccccCCCCccccccccCHHHHH
Confidence            4455667788899999998875321          122 223333333 22333443         1    1 1689999


Q ss_pred             HcCCCEEEEeccC---chHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEE-Eeeee-cCCCCCCCCHHHHHHHHHHH
Q 015894          183 AAGAKEVAIFASA---SESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGY-LSCVV-GCPVEGMVPPSKVAYVSKQL  257 (398)
Q Consensus       183 ~~Gv~~v~i~~~~---Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~-l~~~f-g~~~~~r~~~~~l~~~a~~l  257 (398)
                      +.|+|-+.+.+.+   |+         ...+.++.+.++++.|.++|+.+.+. +.+-. |.......+++.+...++.+
T Consensus       139 rlGADaV~~l~~i~~Gs~---------~e~~~l~~la~vv~ea~~~GlP~~~ep~~y~r~gg~v~~~~dp~~Va~aaRiA  209 (307)
T 3fok_A          139 DRGVDFAKTLVRINLSDA---------GTAPTLEATAHAVNEAAAAQLPIMLEPFMSNWVNGKVVNDLSTDAVIQSVAIA  209 (307)
T ss_dssp             HHTCCEEEEEEEECTTCT---------THHHHHHHHHHHHHHHHHTTCCEEEEEEEEEEETTEEEECCSHHHHHHHHHHH
T ss_pred             HCCCCEEEEEEEECCCCh---------hHHHHHHHHHHHHHHHHHcCCcEEEEeeccccCCCCcCCCCCHHHHHHHHHHH
Confidence            9999986633221   22         13478999999999999999998643 12111 22112347899999999999


Q ss_pred             HhCCCC----EEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEe---CCccchHHHHHHHHHH-hCCCEEee
Q 015894          258 YDMGCS----EISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHF---HDTYGQALSNILASLQ-MGISTVDS  323 (398)
Q Consensus       258 ~~~Gad----~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~---Hnd~GlA~ANalaAl~-aGa~~VD~  323 (398)
                      .++|+|    +|-+.=|      +.    ++.+.+..| +|+-+=+   =+|.--.+...-.|++ +|+..+..
T Consensus       210 aELGADs~~tivK~~y~------e~----f~~Vv~a~~-vPVViaGG~k~~~~~e~L~~v~~A~~~aGa~Gv~v  272 (307)
T 3fok_A          210 AGLGNDSSYTWMKLPVV------EE----MERVMESTT-MPTLLLGGEGGNDPDATFASWEHALTLPGVRGLTV  272 (307)
T ss_dssp             HTCSSCCSSEEEEEECC------TT----HHHHGGGCS-SCEEEECCSCC--CHHHHHHHHHHTTSTTEEEEEE
T ss_pred             HHhCCCcCCCEEEeCCc------HH----HHHHHHhCC-CCEEEeCCCCCCCHHHHHHHHHHHHHhCCCeEEee
Confidence            999999    8776433      23    344544444 3454433   2255677888888999 79886653

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=92.86  E-value=2.1  Score=41.91  Aligned_cols=147  Identities=14%  Similarity=0.110  Sum_probs=83.3

Q ss_pred             EEEeCCHhhH----HHHHHcCCCEEEEecc--CchHHHhhhcCCCHHHHHHHHHHHHHHHHh-CCCcEEEEEeeeecCCC
Q 015894          169 PVLTPNLKGF----EAAVAAGAKEVAIFAS--ASESFSKSNINCTIEDSLIRYRDVALAARE-LSIPVRGYLSCVVGCPV  241 (398)
Q Consensus       169 ~~l~~n~~~i----e~a~~~Gv~~v~i~~~--~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~-~G~~v~~~l~~~fg~~~  241 (398)
                      +.+.++.+++    +.+.+.|+|.|.|-.+  .+. ..+..+|.+...-.+.+.++++..++ .++.|.+-+-.  |.. 
T Consensus        63 QL~g~~p~~~~~aA~~a~~~G~D~IeIn~gcP~~~-~~~d~~G~~l~~~~~~~~eiv~av~~~v~~PV~vKiR~--g~~-  138 (350)
T 3b0p_A           63 QLAGSDPKSLAEAARIGEAFGYDEINLNLGCPSEK-AQEGGYGACLLLDLARVREILKAMGEAVRVPVTVKMRL--GLE-  138 (350)
T ss_dssp             EEECSCHHHHHHHHHHHHHTTCSEEEEEECCCSHH-HHHTTCGGGGGGCHHHHHHHHHHHHHHCSSCEEEEEES--CBT-
T ss_pred             EeCCCCHHHHHHHHHHHHHcCCCEEEECCcCCCCc-CcCCCcchhHHhCHHHHHHHHHHHHHHhCCceEEEEec--CcC-
Confidence            3344554443    4556789998887543  222 22333444433334555566666655 47777643332  211 


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCEEEEccCcC--cCCHH-------HHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHH
Q 015894          242 EGMVPPSKVAYVSKQLYDMGCSEISLGDTIG--VGTPG-------TVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILA  312 (398)
Q Consensus       242 ~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G--~~~P~-------~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANala  312 (398)
                       ...+.+...++++.+.++|++.|.+-+-..  ..+|.       .-.+++..+++.+|.+||..=+=-..   ...+..
T Consensus       139 -~~~~~~~~~~~a~~l~~aG~d~I~V~~r~~~~g~~g~~~~~~~~~~~~~i~~ik~~~~~iPVianGgI~s---~eda~~  214 (350)
T 3b0p_A          139 -GKETYRGLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTFVTNGGIRS---LEEALF  214 (350)
T ss_dssp             -TCCCHHHHHHHHHHHHHTTCCEEEEECSCBC----------CCCCCHHHHHHHHHHCTTSEEEEESSCCS---HHHHHH
T ss_pred             -ccccHHHHHHHHHHHHHcCCCEEEEecCchhcccCcccccCCCcccHHHHHHHHHhCCCCeEEEECCcCC---HHHHHH
Confidence             123456788999999999999998865321  11221       13577888998887677766543211   233344


Q ss_pred             HHHhCCCEEeec
Q 015894          313 SLQMGISTVDSS  324 (398)
Q Consensus       313 Al~aGa~~VD~S  324 (398)
                      +++ ||+.|-..
T Consensus       215 ~l~-GaD~V~iG  225 (350)
T 3b0p_A          215 HLK-RVDGVMLG  225 (350)
T ss_dssp             HHT-TSSEEEEC
T ss_pred             HHh-CCCEEEEC
Confidence            444 88866543

>3elf_A Fructose-bisphosphate aldolase; zinc enzyme, dihydroxyacetone, glyceraldehyd phosphate, aldol condensation, glycolysis, lyase; HET: 2FP; 1.31A {Mycobacterium tuberculosis} PDB: 3ekz_A* 3ekl_A* 4a22_A* 4a21_A*

Probab=92.86  E-value=0.95  Score=44.67  Aligned_cols=197  Identities=14%  Similarity=0.074  Sum_probs=114.6

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCccc--CCCC----HHHHHHHHHhc-c--CCcEEEEeC-C-H--------
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVP--QLAD----AKDVMAAIQNV-E--GARFPVLTP-N-L--------  175 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p--~~~D----~~~v~~~i~~~-~--~~~l~~l~~-n-~--------  175 (398)
                      ....+....++++-.+.+-+.|=-.+...-++..  .+.+    ...+...++.+ .  ++.+....- . .        
T Consensus        28 v~n~e~~~Avl~AAee~~sPvIlq~s~g~~~y~~g~~~~~~v~g~~~~a~~v~~~A~~~~VPVaLHlDHg~~~~ld~~~~  107 (349)
T 3elf_A           28 CTSSETVNAAIKGFADAGSDGIIQFSTGGAEFGSGLGVKDMVTGAVALAEFTHVIAAKYPVNVALHTDHCPKDKLDSYVR  107 (349)
T ss_dssp             CCSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHHCTTTCCHHHHHHHHHHHHHHHHTTSSSCEEEEECCCCGGGGGGTHH
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhcCcchhhhhhhhHHHHHHHHHHHHHHCCCCEEEECCCCCCcccchhhh
Confidence            4677888889999999999976554321101100  0111    12222233321 2  344433331 1 1        


Q ss_pred             -------hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC------
Q 015894          176 -------KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE------  242 (398)
Q Consensus       176 -------~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~------  242 (398)
                             +.++.++++|...|.+=.  |.        .+.+|+++..++++++|++.|+.|++.|-..-|.++.      
T Consensus       108 ~~l~~~~~~i~~~i~~GFtSVMiDg--S~--------lp~eENi~~Tk~vv~~ah~~gvsVEaElG~iGG~Edgv~~~~~  177 (349)
T 3elf_A          108 PLLAISAQRVSKGGNPLFQSHMWDG--SA--------VPIDENLAIAQELLKAAAAAKIILEIEIGVVGGEEDGVANEIN  177 (349)
T ss_dssp             HHHHHHHHHHHTTCCCSCSEEEECC--TT--------SCHHHHHHHHHHHHHHHHHTTCEEEEEESCCBC----------
T ss_pred             hhHHHHHHHHHHHhhcCCCEEEecC--CC--------CCHHHHHHHHHHHHHHHHHcCCeEEEEeeccccccCCcccccc
Confidence                   112233344677776622  22        2578999999999999999999999888765554432      


Q ss_pred             --CCCCHHHHHHHHHHHH--hCCCCEEEEc--cCcCcC-------CHHHHHHHHHHHHhhC--C----CCeEEEEeCCcc
Q 015894          243 --GMVPPSKVAYVSKQLY--DMGCSEISLG--DTIGVG-------TPGTVIPMLEAVLDAV--P----VDKLAVHFHDTY  303 (398)
Q Consensus       243 --~r~~~~~l~~~a~~l~--~~Gad~I~L~--DT~G~~-------~P~~v~~lv~~l~~~~--p----~~~l~~H~Hnd~  303 (398)
                        -.++|+...+++++.-  .-|+|.+.++  -.=|.-       .|..+.++=+.+.+.+  |    ++||.+|+=  -
T Consensus       178 ~~~yT~Peea~~Fv~~tg~~~~gvD~LAvaiGt~HG~Yk~g~p~L~~~~L~~I~~~v~~~~~~~~~~~~vpLVlHGg--S  255 (349)
T 3elf_A          178 EKLYTSPEDFEKTIEALGAGEHGKYLLAATFGNVHGVYKPGNVKLRPDILAQGQQVAAAKLGLPADAKPFDFVFHGG--S  255 (349)
T ss_dssp             ---CCCHHHHHHHHHHHTTSTTSCEEEEECSSCBSSCCCTTSSCCCTHHHHHHHHHHHHHHTCCTTCCCCCEEECCC--T
T ss_pred             cccCCCHHHHHHHHHHhCCCCCCceEEEEecCCcccCCCCCCCccCHHHHHHHHHHHHhhcCCccccCCCcEEEeCC--C
Confidence              2478999888876553  2247765442  222332       3445555545554333  2    467887765  4


Q ss_pred             chHHHHHHHHHHhCCCEEee
Q 015894          304 GQALSNILASLQMGISTVDS  323 (398)
Q Consensus       304 GlA~ANalaAl~aGa~~VD~  323 (398)
                      |........|++.|+.-|+.
T Consensus       256 G~p~e~i~~ai~~GV~KiNi  275 (349)
T 3elf_A          256 GSLKSEIEEALRYGVVKMNV  275 (349)
T ss_dssp             TCCHHHHHHHHHTTEEEEEE
T ss_pred             CCCHHHHHHHHHcCCEEEEc
Confidence            88889999999999876644

>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}

Probab=92.80  E-value=3.7  Score=38.71  Aligned_cols=120  Identities=11%  Similarity=0.055  Sum_probs=69.1

Q ss_pred             ccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCC--CC---CcccC---CCCHHHHHHHHHhccCCcE
Q 015894           97 FVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFV--SP---KWVPQ---LADAKDVMAAIQNVEGARF  168 (398)
Q Consensus        97 ~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~--~~---~~~p~---~~D~~~v~~~i~~~~~~~l  168 (398)
                      ++-+.=-|+||-...        .-.+.++.+.++|++.||+....  ..   .+.|.   ..+.+++.+.+++ .++++
T Consensus        22 ~~g~~~~s~~~~~~~--------~l~~~l~~aa~~G~~~VEl~~~~~~~~~~~~~~p~~~~~~~~~~l~~~l~~-~GL~i   92 (305)
T 3obe_A           22 KMGLQTYSLGQELLQ--------DMPNGLNRLAKAGYTDLEIFGYREDTGKFGDYNPKNTTFIASKDYKKMVDD-AGLRI   92 (305)
T ss_dssp             CCEEEGGGGTHHHHT--------THHHHHHHHHHHTCCEEEECCBCTTTCCBCCC----CCCBCHHHHHHHHHH-TTCEE
T ss_pred             ceEEEEEEchhhhhc--------CHHHHHHHHHHcCCCEEEecccccccccccCcCcccccccCHHHHHHHHHH-CCCeE
Confidence            455666677764221        23568888999999999998531  00   11111   1256666666653 35555


Q ss_pred             EEEe-C---C----------H----hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEE
Q 015894          169 PVLT-P---N----------L----KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVR  230 (398)
Q Consensus       169 ~~l~-~---n----------~----~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~  230 (398)
                      .++. .   +          .    +.++.|.+.|++.|.+. +..+..    ..-..+...+.+.++.++|+++|+.+.
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~~~v~~~-~~~~~~----~~~~~~~~~~~l~~l~~~a~~~Gv~l~  167 (305)
T 3obe_A           93 SSSHLTPSLREYTKENMPKFDEFWKKATDIHAELGVSCMVQP-SLPRIE----NEDDAKVVSEIFNRAGEITKKAGILWG  167 (305)
T ss_dssp             EEEBCCCSCCCCCGGGHHHHHHHHHHHHHHHHHHTCSEEEEC-CCCCCS----SHHHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred             EEeeccccccccchhhHHHHHHHHHHHHHHHHHcCCCEEEeC-CCCCCC----CHHHHHHHHHHHHHHHHHHHHcCCEEE
Confidence            4432 1   1          1    12456777899999874 221100    000234556777888999999998765

>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural genomics, joint center for structural genomics, JCSG; HET: MSE CIT; 1.75A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1o0y_A* 3r13_A*

Probab=92.75  E-value=1.9  Score=40.81  Aligned_cols=108  Identities=23%  Similarity=0.257  Sum_probs=73.4

Q ss_pred             eeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcC---CHHHHHHHHHHHHhhCCCCe----EEEEeCCccchH
Q 015894          234 SCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVG---TPGTVIPMLEAVLDAVPVDK----LAVHFHDTYGQA  306 (398)
Q Consensus       234 ~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~---~P~~v~~lv~~l~~~~p~~~----l~~H~Hnd~GlA  306 (398)
                      +.+.|.|.. ..+.+.-..-++.+.+.||+.|-+.=-.|.+   .-..+.+-+..+++..++.+    |+.-..++-.. 
T Consensus        98 ~tVigFP~G-~~~~~~Kv~Ea~~Ai~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~Lt~eei-  175 (260)
T 3r12_A           98 VTVVGFPLG-ANETRTKAHEAIFAVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYLDTEEK-  175 (260)
T ss_dssp             EEEESTTTC-CSCHHHHHHHHHHHHHHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHH-
T ss_pred             EEEecCCCC-CCcHHHHHHHHHHHHHcCCCEEEEEeehhhhccccHHHHHHHHHHHHHhcCCCcEEEEEeCCCCCHHHH-
Confidence            344566754 4455544555777888999999888777774   55778888888887754322    33344455444 


Q ss_pred             HHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q 015894          307 LSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNG  352 (398)
Q Consensus       307 ~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~  352 (398)
                      ...+..|.++||++|=+| .|.+        +|++.+|++-.+.+.
T Consensus       176 ~~A~~ia~eaGADfVKTS-TGf~--------~~GAT~edV~lm~~~  212 (260)
T 3r12_A          176 IAACVISKLAGAHFVKTS-TGFG--------TGGATAEDVHLMKWI  212 (260)
T ss_dssp             HHHHHHHHHTTCSEEECC-CSSS--------SCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCEEEcC-CCCC--------CCCCCHHHHHHHHHH
Confidence            344677889999999999 5553        457888888777663

>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*

Probab=92.64  E-value=1.1  Score=44.50  Aligned_cols=140  Identities=16%  Similarity=0.048  Sum_probs=83.6

Q ss_pred             HHHHHcCCCEEEEeccC--------chH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-CC-cEEEEEeee-ecCCCCCCC
Q 015894          179 EAAVAAGAKEVAIFASA--------SES--FSKSNINCTIEDSLIRYRDVALAAREL-SI-PVRGYLSCV-VGCPVEGMV  245 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~~--------Sd~--~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~-~v~~~l~~~-fg~~~~~r~  245 (398)
                      ++|.++|.|.|.|-..-        |+.  +....+|-+.++-.+.+.++++.+|+. |. .|.+-++.. +........
T Consensus       173 ~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~v~vrls~~~~~~~~~~~~  252 (377)
T 2r14_A          173 QRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIRLTPFLELFGLTDDE  252 (377)
T ss_dssp             HHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCCTTCCCSC
T ss_pred             HHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCCcEEEEeccccccCCCCCCC
Confidence            35578999999885431        222  223345667777777778888887764 43 555545421 000001234


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEccCc-CcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhC-CCEEee
Q 015894          246 PPSKVAYVSKQLYDMGCSEISLGDTI-GVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMG-ISTVDS  323 (398)
Q Consensus       246 ~~~~l~~~a~~l~~~Gad~I~L~DT~-G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aG-a~~VD~  323 (398)
                      +.+...++++.+.++|++.|.+..-. ....|..-.++++.+++.++. ||..=+-  .  -...+..+++.| ||.|-.
T Consensus       253 ~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~ik~~~~i-Pvi~~Gg--i--~~~~a~~~l~~g~aD~V~i  327 (377)
T 2r14_A          253 PEAMAFYLAGELDRRGLAYLHFNEPDWIGGDITYPEGFREQMRQRFKG-GLIYCGN--Y--DAGRAQARLDDNTADAVAF  327 (377)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEECCC------CCCTTHHHHHHHHCCS-EEEEESS--C--CHHHHHHHHHTTSCSEEEE
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEeCCcccCCCCcchHHHHHHHHHHCCC-CEEEECC--C--CHHHHHHHHHCCCceEEee
Confidence            67888999999999999998885411 000110013567778887753 4444322  2  267788888888 887643

>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*

Probab=92.44  E-value=0.94  Score=42.89  Aligned_cols=89  Identities=13%  Similarity=0.158  Sum_probs=61.5

Q ss_pred             CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHh-CCCCEEEE--c--------cCcCcCCHHHHHHHHHHHHhhCCCCe
Q 015894          226 SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYD-MGCSEISL--G--------DTIGVGTPGTVIPMLEAVLDAVPVDK  294 (398)
Q Consensus       226 G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~-~Gad~I~L--~--------DT~G~~~P~~v~~lv~~l~~~~p~~~  294 (398)
                      +..+.+++..         .+++.+.+.++.+.+ .|+|.|.|  .        |..|. .|..+.++++.+++... .+
T Consensus        98 ~~p~~v~l~~---------~~~~~~~~~a~~~~~~~g~d~iei~~~~p~~~~g~~~~g~-~~~~~~eii~~v~~~~~-~p  166 (311)
T 1ep3_A           98 ELPIIANVAG---------SEEADYVAVCAKIGDAANVKAIELNISCPNVKHGGQAFGT-DPEVAAALVKACKAVSK-VP  166 (311)
T ss_dssp             TSCEEEEECC---------SSHHHHHHHHHHHTTSTTEEEEEEECCSEEGGGTTEEGGG-CHHHHHHHHHHHHHHCS-SC
T ss_pred             CCcEEEEEcC---------CCHHHHHHHHHHHhccCCCCEEEEeCCCCCCCCchhhhcC-CHHHHHHHHHHHHHhcC-CC
Confidence            5666655541         257888999988888 89997755  1        33332 68889999999998863 56


Q ss_pred             EEEEeCCccchHHHHHHHHHHhCCCEEeecc
Q 015894          295 LAVHFHDTYGQALSNILASLQMGISTVDSSV  325 (398)
Q Consensus       295 l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv  325 (398)
                      |.+..--+..-...-+..+.++|++.|+++=
T Consensus       167 v~vk~~~~~~~~~~~a~~l~~~G~d~i~v~~  197 (311)
T 1ep3_A          167 LYVKLSPNVTDIVPIAKAVEAAGADGLTMIN  197 (311)
T ss_dssp             EEEEECSCSSCSHHHHHHHHHTTCSEEEECC
T ss_pred             EEEEECCChHHHHHHHHHHHHcCCCEEEEeC
Confidence            7776653332223335667789999999854

>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*

Probab=92.44  E-value=1.5  Score=43.16  Aligned_cols=138  Identities=15%  Similarity=0.105  Sum_probs=85.8

Q ss_pred             HHHHHcCCCEEEEecc--------CchH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-C--CcEEEEEeeeecCCCCCCC
Q 015894          179 EAAVAAGAKEVAIFAS--------ASES--FSKSNINCTIEDSLIRYRDVALAAREL-S--IPVRGYLSCVVGCPVEGMV  245 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~--------~Sd~--~~~~~~~~s~~~~l~~~~~~v~~ak~~-G--~~v~~~l~~~fg~~~~~r~  245 (398)
                      ++|.++|.|.|.|-..        .|+.  +....+|-+.++-.+.+.++++.+|+. |  +.|.+-++..-..+ .+..
T Consensus       165 ~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vRis~~~~~~-~G~~  243 (363)
T 3l5l_A          165 RRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTARFGVLEYDG-RDEQ  243 (363)
T ss_dssp             HHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEEEEEECSSS-CHHH
T ss_pred             HHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEEecchhcCC-CCCC
Confidence            4567899999888653        1222  223345667777777888899988876 4  44655555321011 1114


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEccC--cCc----CCHHHHHHHHHHHHhhCCCCeEEEEeCCccch-HHHHHHHHHHhC-
Q 015894          246 PPSKVAYVSKQLYDMGCSEISLGDT--IGV----GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQ-ALSNILASLQMG-  317 (398)
Q Consensus       246 ~~~~l~~~a~~l~~~Gad~I~L~DT--~G~----~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~Gl-A~ANalaAl~aG-  317 (398)
                      +.+...++++.+.++|+|.|.+...  ...    ..|..-.++++.+++.+. +||..=+    |. ....+..+++.| 
T Consensus       244 ~~~~~~~la~~L~~~Gvd~i~vs~g~~~~~~~~~~~~~~~~~~~~~ir~~~~-iPVi~~G----gI~s~e~a~~~l~~G~  318 (363)
T 3l5l_A          244 TLEESIELARRFKAGGLDLLSVSVGFTIPDTNIPWGPAFMGPIAERVRREAK-LPVTSAW----GFGTPQLAEAALQANQ  318 (363)
T ss_dssp             HHHHHHHHHHHHHHTTCCEEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHT-CCEEECS----STTSHHHHHHHHHTTS
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEecCccccccccCCCcchhHHHHHHHHHHcC-CcEEEeC----CCCCHHHHHHHHHCCC
Confidence            5788899999999999999888752  111    123334567778887764 3444322    22 246677889999 


Q ss_pred             CCEEe
Q 015894          318 ISTVD  322 (398)
Q Consensus       318 a~~VD  322 (398)
                      ||.|-
T Consensus       319 aD~V~  323 (363)
T 3l5l_A          319 LDLVS  323 (363)
T ss_dssp             CSEEE
T ss_pred             ccEEE
Confidence            78653

>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*

Probab=92.44  E-value=7.5  Score=36.83  Aligned_cols=186  Identities=11%  Similarity=0.100  Sum_probs=103.2

Q ss_pred             HHHHHHHhcCCCEEEEecCCC-C-------Cccc-----------CCCCHHHHHHHHHhc---cCCcEEE-E-eCCHhhH
Q 015894          123 ELIKLLVSSGLAVVEATSFVS-P-------KWVP-----------QLADAKDVMAAIQNV---EGARFPV-L-TPNLKGF  178 (398)
Q Consensus       123 ~ia~~L~~aGv~~IEvG~~~~-~-------~~~p-----------~~~D~~~v~~~i~~~---~~~~l~~-l-~~n~~~i  178 (398)
                      +..+.+.+.|+-.+++++... +       ++.+           +....+.+++.++..   ++..+.+ + ..+.+++
T Consensus        29 ~~~~~~~~~G~g~v~~~~v~~~~~~gn~~pr~~~~~~~~in~~g~~~~g~~~~~~~~~~~~~~~~~p~~~~i~g~~~~~~  108 (314)
T 2e6f_A           29 EDLRCMTASSSGALVSKSCTSAPRDGNPEPRYMAFPLGSINSMGLPNLGFDFYLKYASDLHDYSKKPLFLSISGLSVEEN  108 (314)
T ss_dssp             HHHHHHHHSSCSCEECCCBCSSCBCCSCSCCEEEETTEEEECCCCCBSCHHHHHHHHHHTCCTTTCCEEEEECCSSHHHH
T ss_pred             HHHHHHHHCCCCEEEeCccCCcccCCCCCCcEEecccceeecCCCCCcCHHHHHHHHHHHhhcCCCcEEEEeCCCCHHHH
Confidence            445678999999999875321 1       1000           011244444555532   2344332 2 2344443


Q ss_pred             ----HHHHHcCCC---EEEEeccCchHH-HhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecCCCCCCCCHHH
Q 015894          179 ----EAAVAAGAK---EVAIFASASESF-SKSNINCTIEDSLIRYRDVALAAREL-SIPVRGYLSCVVGCPVEGMVPPSK  249 (398)
Q Consensus       179 ----e~a~~~Gv~---~v~i~~~~Sd~~-~~~~~~~s~~~~l~~~~~~v~~ak~~-G~~v~~~l~~~fg~~~~~r~~~~~  249 (398)
                          +++.+.|+|   .|.+-++ ++.. ....++.+.+.    +.++++.+|+. +++|.+-+.     ++   .+.+.
T Consensus       109 ~~~a~~~~~~g~d~~~~iein~~-~P~~~g~~~~g~~~~~----~~~ii~~vr~~~~~Pv~vK~~-----~~---~~~~~  175 (314)
T 2e6f_A          109 VAMVRRLAPVAQEKGVLLELNLS-CPNVPGKPQVAYDFEA----MRTYLQQVSLAYGLPFGVKMP-----PY---FDIAH  175 (314)
T ss_dssp             HHHHHHHHHHHHHHCCEEEEECC-CCCSTTCCCGGGSHHH----HHHHHHHHHHHHCSCEEEEEC-----CC---CCHHH
T ss_pred             HHHHHHHHHhCCCcCceEEEEcC-CCCCCCchhhcCCHHH----HHHHHHHHHHhcCCCEEEEEC-----CC---CCHHH
Confidence                455567888   7777443 1211 11123334443    34445555443 666654332     22   36788


Q ss_pred             HHHHHHHHHhCC-CCEEEEccCcCc----------------------CCH---HHHHHHHHHHHhhCCCCeEEEEeCCcc
Q 015894          250 VAYVSKQLYDMG-CSEISLGDTIGV----------------------GTP---GTVIPMLEAVLDAVPVDKLAVHFHDTY  303 (398)
Q Consensus       250 l~~~a~~l~~~G-ad~I~L~DT~G~----------------------~~P---~~v~~lv~~l~~~~p~~~l~~H~Hnd~  303 (398)
                      +.++++.+.++| +|.|.+.++.|.                      ..|   ....++++.+++.+|.+||-.=+--..
T Consensus       176 ~~~~a~~~~~aG~~d~i~v~~~~~~~~~i~~~~~~~~~~~~~~~gG~sg~~~~p~~~~~i~~v~~~~~~ipvi~~GGI~~  255 (314)
T 2e6f_A          176 FDTAAAVLNEFPLVKFVTCVNSVGNGLVIDAESESVVIKPKQGFGGLGGKYILPTALANVNAFYRRCPDKLVFGCGGVYS  255 (314)
T ss_dssp             HHHHHHHHHTCTTEEEEEECCCEEEEECEETTTTEESCCGGGGEEEEESGGGHHHHHHHHHHHHHHCTTSEEEEESSCCS
T ss_pred             HHHHHHHHHhcCCceEEEEeCCCCccccccCCCCCcccccCcCCCccCcccccHHHHHHHHHHHHhcCCCCEEEECCCCC
Confidence            889999999999 999998886631                      111   123477888888776666655443222


Q ss_pred             chHHHHHHHHHHhCCCEEeec
Q 015894          304 GQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       304 GlA~ANalaAl~aGa~~VD~S  324 (398)
                         ...+.+++.+||+.|-..
T Consensus       256 ---~~da~~~l~~GAd~V~ig  273 (314)
T 2e6f_A          256 ---GEDAFLHILAGASMVQVG  273 (314)
T ss_dssp             ---HHHHHHHHHHTCSSEEEC
T ss_pred             ---HHHHHHHHHcCCCEEEEc
Confidence               245666678899877543

>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}

Probab=92.29  E-value=3.5  Score=39.48  Aligned_cols=175  Identities=13%  Similarity=0.068  Sum_probs=97.9

Q ss_pred             HHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCC---------------HhhHHHHHHcCCCE
Q 015894          124 LIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPN---------------LKGFEAAVAAGAKE  188 (398)
Q Consensus       124 ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n---------------~~~ie~a~~~Gv~~  188 (398)
                      =+....+.|.+.||+=.-..   ++.+.....+++.+++..++.+-+|+|.               ..+++.+.++|++.
T Consensus        51 ~a~~A~~gGAdRIELc~~l~---~GGlTPS~g~i~~a~~~~~ipV~vMIRPRgGdF~Ys~~E~~~M~~dI~~~~~~GAdG  127 (287)
T 3iwp_A           51 SAVNAERGGADRIELCSGLS---EGGTTPSMGVLQVVKQSVQIPVFVMIRPRGGDFLYSDREIEVMKADIRLAKLYGADG  127 (287)
T ss_dssp             HHHHHHHHTCSEEEECBCGG---GTCBCCCHHHHHHHHTTCCSCEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSE
T ss_pred             HHHHHHHhCCCEEEECCCCC---CCCCCCCHHHHHHHHHhcCCCeEEEEecCCCCcccCHHHHHHHHHHHHHHHHcCCCE
Confidence            34556889999999953211   1112222356666665556777777752               13678899999999


Q ss_pred             EEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 015894          189 VAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG  268 (398)
Q Consensus       189 v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~  268 (398)
                      |.+-+-..|-.      .+    +++++++++.++.  +.+.  +-.+|   |.. .++   .+..+.+.++|+++|--.
T Consensus       128 vVfG~L~~dg~------iD----~~~~~~Li~~a~~--l~vT--FHRAF---D~~-~d~---~~Ale~Li~lGvdrILTS  186 (287)
T 3iwp_A          128 LVFGALTEDGH------ID----KELCMSLMAICRP--LPVT--FHRAF---DMV-HDP---MAALETLLTLGFERVLTS  186 (287)
T ss_dssp             EEECCBCTTSC------BC----HHHHHHHHHHHTT--SCEE--ECGGG---GGC-SCH---HHHHHHHHHHTCSEEEEC
T ss_pred             EEEeeeCCCCC------cC----HHHHHHHHHHcCC--CcEE--EECch---hcc-CCH---HHHHHHHHHcCCCEEECC
Confidence            98864322311      11    3456667777654  4443  33444   221 233   345667778899998763


Q ss_pred             cCcCcCCHHHHHHHHHHHHhhC-CCCeEEEEeCCccchHHHHHHHHHH-hCCCEEeeccccC
Q 015894          269 DTIGVGTPGTVIPMLEAVLDAV-PVDKLAVHFHDTYGQALSNILASLQ-MGISTVDSSVSGL  328 (398)
Q Consensus       269 DT~G~~~P~~v~~lv~~l~~~~-p~~~l~~H~Hnd~GlA~ANalaAl~-aGa~~VD~Sv~Gl  328 (398)
                      =.  .-+..+=.+.++.+.+.. ..++|-.    .-|.-..|+-.-++ +|++.++.|....
T Consensus       187 G~--~~~a~~Gl~~Lk~Lv~~a~~rI~Ima----GGGV~~~Ni~~l~~~tG~~~~H~S~~~~  242 (287)
T 3iwp_A          187 GC--DSSALEGLPLIKRLIEQAKGRIVVMP----GGGITDRNLQRILEGSGATEFHCSARST  242 (287)
T ss_dssp             TT--SSSTTTTHHHHHHHHHHHTTSSEEEE----CTTCCTTTHHHHHHHHCCSEEEECCEEE
T ss_pred             CC--CCChHHhHHHHHHHHHHhCCCCEEEE----CCCcCHHHHHHHHHhhCCCEEeECcCcc
Confidence            22  111122223334443333 2233333    23455566666565 9999999997543

>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A

Probab=92.28  E-value=7  Score=36.11  Aligned_cols=95  Identities=18%  Similarity=0.105  Sum_probs=61.5

Q ss_pred             HHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccC-------------------cCcCCH
Q 015894          217 DVALAARELSIP-VRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDT-------------------IGVGTP  276 (398)
Q Consensus       217 ~~v~~ak~~G~~-v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT-------------------~G~~~P  276 (398)
                      +..+.+|+.|.. +.+|+..       +..+.+...+.++.+.+.|+|.|-|...                   .+.+++
T Consensus         7 ~~~~~~~~~~~~~~~~~i~~-------g~~~~~~~~~~~~~l~~~Gad~ielg~p~~dp~~dg~~i~~a~~~al~~g~~~   79 (262)
T 1rd5_A            7 DTMAALMAKGKTAFIPYITA-------GDPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTM   79 (262)
T ss_dssp             HHHHHHHHTTCCEEEEEEET-------TSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCH
T ss_pred             HHHHHHHhcCCceEEEEeeC-------CCCCHHHHHHHHHHHHHcCCCEEEECCCCCCcccCCHHHHHHHHHHHHcCCCH
Confidence            344455555554 4455541       2235688899999999999999888542                   233678


Q ss_pred             HHHHHHHHHHHhhCCCCeEEEEeCCc----cchHHHHHHHHHHhCCCEEeec
Q 015894          277 GTVIPMLEAVLDAVPVDKLAVHFHDT----YGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       277 ~~v~~lv~~l~~~~p~~~l~~H~Hnd----~GlA~ANalaAl~aGa~~VD~S  324 (398)
                      ....++++.+++.. ++|+.+=...+    +++.     .+.++|++.|...
T Consensus        80 ~~~~~~i~~ir~~~-~~Pv~~m~~~~~~~~~~~~-----~a~~aGadgv~v~  125 (262)
T 1rd5_A           80 DAVLEMLREVTPEL-SCPVVLLSYYKPIMFRSLA-----KMKEAGVHGLIVP  125 (262)
T ss_dssp             HHHHHHHHHHGGGC-SSCEEEECCSHHHHSCCTH-----HHHHTTCCEEECT
T ss_pred             HHHHHHHHHHHhcC-CCCEEEEecCcHHHHHHHH-----HHHHcCCCEEEEc
Confidence            88899999999873 45654421111    1221     2889999987764

>3q94_A Fructose-bisphosphate aldolase, class II; structural genomics, center for structural genomics of infec diseases, csgid, alpha-beta barrel; HET: 13P; 2.30A {Bacillus anthracis} SCOP: c.1.10.0

Probab=92.26  E-value=0.77  Score=44.13  Aligned_cols=102  Identities=14%  Similarity=0.184  Sum_probs=72.4

Q ss_pred             HHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEc-cCcCc-CCHHHHHHHHHHHHh--hC
Q 015894          216 RDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLG-DTIGV-GTPGTVIPMLEAVLD--AV  290 (398)
Q Consensus       216 ~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~-DT~G~-~~P~~v~~lv~~l~~--~~  290 (398)
                      +++.+.|++.|+-|-+ +.         -.+.+.+..+++.+.+.+... |.+. .+..+ .....+..++..+.+  ..
T Consensus        10 ~~ll~~A~~~~yAV~A-fN---------v~n~e~~~avi~AAee~~sPvIlq~s~~~~~~~~g~~~~~~~v~~~A~~~~~   79 (288)
T 3q94_A           10 KEMLNKALEGKYAVGQ-FN---------MNNLEWTQAILAAAEEEKSPVILGVSEGAARHMTGFKTVVAMVKALIEEMNI   79 (288)
T ss_dssp             HHHHHHHHHHTCCEEE-EE---------CCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHCCcEEEE-Ee---------eCCHHHHHHHHHHHHHhCCCEEEECChhhhhhcCCHHHHHHHHHHHHHhcCC
Confidence            5678899999998742 22         146788999999999999875 4444 23333 234556777777766  43


Q ss_pred             CCCeEEEEeCCccchHHHHHHHHHHhCCC--EEeeccccCCC
Q 015894          291 PVDKLAVHFHDTYGQALSNILASLQMGIS--TVDSSVSGLGG  330 (398)
Q Consensus       291 p~~~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGe  330 (398)
                       .+|+.+|.  |.|.....+..|+++|.+  ++|+|-..+-+
T Consensus        80 -~VPValHl--DHg~~~e~i~~ai~~GFtSVMiDgS~~p~ee  118 (288)
T 3q94_A           80 -TVPVAIHL--DHGSSFEKCKEAIDAGFTSVMIDASHHPFEE  118 (288)
T ss_dssp             -CSCEEEEE--EEECSHHHHHHHHHHTCSEEEECCTTSCHHH
T ss_pred             -CCcEEEEC--CCCCCHHHHHHHHHcCCCeEEEeCCCCCHHH
Confidence             45777765  566678889999999998  67999876655

>1gvf_A Tagatose-bisphosphate aldolase AGAY; lyase, zinc.; HET: PGH; 1.45A {Escherichia coli} SCOP: c.1.10.2

Probab=92.21  E-value=0.98  Score=43.35  Aligned_cols=117  Identities=14%  Similarity=0.109  Sum_probs=83.3

Q ss_pred             HHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCC-EEEEccCc-CcCCHHHHHHHHHHHHhhCCCC
Q 015894          216 RDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCS-EISLGDTI-GVGTPGTVIPMLEAVLDAVPVD  293 (398)
Q Consensus       216 ~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad-~I~L~DT~-G~~~P~~v~~lv~~l~~~~p~~  293 (398)
                      +++.+.|++.|+-|- .+..         .+.+.+..+++.+.+.+.. +|.+.-.. .++....+..++..+.+.++ +
T Consensus         7 ~~ll~~A~~~~yAv~-AfNv---------~n~e~~~avl~AAe~~~sPvIlq~s~~~~~y~g~~~~~~~v~~~a~~~~-V   75 (286)
T 1gvf_A            7 KYLLQDAQANGYAVP-AFNI---------HNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYN-M   75 (286)
T ss_dssp             HHHHHHHHHHTCCEE-EEEC---------CSHHHHHHHHHHHHHHTCCCEEEECTTHHHHSCHHHHHHHHHHHHHHTT-S
T ss_pred             HHHHHHHHHCCCEEE-EEee---------CCHHHHHHHHHHHHHhCCCEEEECChhHHhhcCHHHHHHHHHHHHHhCC-C
Confidence            567788999999874 3331         3678888999999998876 45554432 23335667788888877765 5


Q ss_pred             eEEEEeCCccchHHHHHHHHHHhCCC--EEeeccccCCCCCCCCCCCCCc-cHHHHHHHHHhCC
Q 015894          294 KLAVHFHDTYGQALSNILASLQMGIS--TVDSSVSGLGGCPYAKGASGNV-ATEDVVYMLNGLG  354 (398)
Q Consensus       294 ~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGecp~a~graGNa-~lE~vv~~L~~~G  354 (398)
                      |+.+|.  |.|.....+..|+++|.+  ++|+|-..+-+         |. -|.+++...+..|
T Consensus        76 PValHl--DHg~~~e~i~~ai~~GFtSVMiDgS~lp~ee---------Ni~~Tk~vv~~ah~~g  128 (286)
T 1gvf_A           76 PLALHL--DHHESLDDIRRKVHAGVRSAMIDGSHFPFAE---------NVKLVKSVVDFCHSQD  128 (286)
T ss_dssp             CBEEEE--EEECCHHHHHHHHHTTCCEEEECCTTSCHHH---------HHHHHHHHHHHHHHTT
T ss_pred             cEEEEc--CCCCCHHHHHHHHHcCCCeEEECCCCCCHHH---------HHHHHHHHHHHHHHcC
Confidence            676665  555668899999999998  67999887766         55 5666777776433

>3dx5_A Uncharacterized protein ASBF; beta-alpha barrel, petrobactin synthesis, ASB locus, structu genomics, PSI-2, protein structure initiative; HET: MSE DHB TRS; 2.12A {Bacillus anthracis}

Probab=92.10  E-value=0.88  Score=42.00  Aligned_cols=227  Identities=9%  Similarity=0.055  Sum_probs=111.9

Q ss_pred             HHHHHHHHhcCCCEEEEecCCCCCcccCC--CCHHHHHHHHHhccCCcEEEEeCC--------H--------hhHHHHHH
Q 015894          122 VELIKLLVSSGLAVVEATSFVSPKWVPQL--ADAKDVMAAIQNVEGARFPVLTPN--------L--------KGFEAAVA  183 (398)
Q Consensus       122 ~~ia~~L~~aGv~~IEvG~~~~~~~~p~~--~D~~~v~~~i~~~~~~~l~~l~~n--------~--------~~ie~a~~  183 (398)
                      .+.++.+.++|++.||+..+..+ +++..  .+.+++.+.++. .+.++.++.+.        .        +.++.|.+
T Consensus        18 ~~~l~~~~~~G~~~vEl~~~~~~-~~~~~~~~~~~~~~~~l~~-~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~   95 (286)
T 3dx5_A           18 TDIVQFAYENGFEGIELWGTHAQ-NLYMQEYETTERELNCLKD-KTLEITMISDYLDISLSADFEKTIEKCEQLAILANW   95 (286)
T ss_dssp             HHHHHHHHHTTCCEEEEEHHHHH-HHHHHCHHHHHHHHHHTGG-GTCCEEEEECCCCCSTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCEEEEcccccc-cccccCHHHHHHHHHHHHH-cCCeEEEEecCCCCCCchhHHHHHHHHHHHHHHHHH
Confidence            35677788899999999643110 01000  112222333322 35666666421        1        13566778


Q ss_pred             cCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 015894          184 AGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCS  263 (398)
Q Consensus       184 ~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad  263 (398)
                      .|++.|.++.......  ....-..+...+.+.++.++|++.|+.+.  +..   .+...-.+++.+.++++.+   +.+
T Consensus        96 lG~~~v~~~~g~~~~~--~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~--lE~---~~~~~~~~~~~~~~l~~~~---~~~  165 (286)
T 3dx5_A           96 FKTNKIRTFAGQKGSA--DFSQQERQEYVNRIRMICELFAQHNMYVL--LET---HPNTLTDTLPSTLELLGEV---DHP  165 (286)
T ss_dssp             HTCCEEEECSCSSCGG--GSCHHHHHHHHHHHHHHHHHHHHTTCEEE--EEC---CTTSTTSSHHHHHHHHHHH---CCT
T ss_pred             hCCCEEEEcCCCCCcc--cCcHHHHHHHHHHHHHHHHHHHHhCCEEE--Eec---CCCcCcCCHHHHHHHHHhc---CCC
Confidence            8999998865432110  00000234566777888899999998764  221   1222224566666666544   333


Q ss_pred             EE-EEccCcCcCCH-HHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHH---HHH-HhCCCEEeeccccCCCCCCCCCC
Q 015894          264 EI-SLGDTIGVGTP-GTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNIL---ASL-QMGISTVDSSVSGLGGCPYAKGA  337 (398)
Q Consensus       264 ~I-~L~DT~G~~~P-~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANal---aAl-~aGa~~VD~Sv~GlGecp~a~gr  337 (398)
                      .+ ..-|+.=.... .+..+.++.+.   + --.++|++|..+-.....+   ... ..|...-   -..+        +
T Consensus       166 ~vg~~~D~~h~~~~g~d~~~~l~~~~---~-~i~~vHl~D~~~~~~~~~~~~~~~~~~~g~~~~---~~~~--------G  230 (286)
T 3dx5_A          166 NLKINLDFLHIWESGADPVDSFQQLR---P-WIQHYHFKNISSADYLHVFEPNNVYAAAGNRTG---MVPL--------F  230 (286)
T ss_dssp             TEEEEEEHHHHHHTTCCHHHHHHHHG---G-GEEEEEECEESCGGGGGGGSHHHHHSTTCCCTT---EECG--------G
T ss_pred             CeEEEeccccHhhcCCCHHHHHHHHH---h-HheEEEecCCcccccccccCccccccccCccee---eecc--------C
Confidence            22 23344221110 12233344433   2 2478999998774210000   000 0111100   0111        3


Q ss_pred             CCCccHHHHHHHHHhC-C---CCC-ccC-hHHHHHHHHHHHHHh
Q 015894          338 SGNVATEDVVYMLNGL-G---VRT-NVD-IRKLMIAGDFICKHL  375 (398)
Q Consensus       338 aGNa~lE~vv~~L~~~-G---i~t-~iD-l~~L~~~~~~v~~~~  375 (398)
                      .|..+...++..|++. |   ++. +-| .+.+.+-.+++.+..
T Consensus       231 ~G~id~~~i~~~L~~~~g~~~lE~~~~d~~~~~~~s~~~Lr~~~  274 (286)
T 3dx5_A          231 EGIVNYDEIIQEVRDTDHFASLEWFGHNAKDILKAEMKVLTNRN  274 (286)
T ss_dssp             GSSSCHHHHHHHHTTSSCEEEECCCSSCHHHHHHHHHHHHHHCC
T ss_pred             CCcCCHHHHHHHHHhcCCCEEEEEeCCCHHHHHHHHHHHHHhcC
Confidence            6789999999999873 2   121 112 245555566665544

>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}

Probab=92.00  E-value=2.7  Score=39.57  Aligned_cols=119  Identities=7%  Similarity=-0.049  Sum_probs=71.1

Q ss_pred             ccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe-CC-
Q 015894           97 FVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT-PN-  174 (398)
Q Consensus        97 ~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~-~n-  174 (398)
                      ++-+.=-|+||-.+.    .+   -.+.++.+.++|++.||+.........+  .+.+++.+.+++ .+.++.++. +. 
T Consensus        14 ~~g~~~~s~~~~~~~----~~---~~~~l~~~a~~G~~~VEl~~~~~~~~~~--~~~~~~~~~l~~-~GL~v~~~~~~~~   83 (303)
T 3l23_A           14 EIGLQIYSLSQELYK----GD---VAANLRKVKDMGYSKLELAGYGKGAIGG--VPMMDFKKMAED-AGLKIISSHVNPV   83 (303)
T ss_dssp             CCEEEGGGGGGGGGS----SC---HHHHHHHHHHTTCCEEEECCEETTEETT--EEHHHHHHHHHH-TTCEEEEEECCCB
T ss_pred             ceEEEEEEchhhhcc----CC---HHHHHHHHHHcCCCEEEeccccCcccCC--CCHHHHHHHHHH-cCCeEEEEecccc
Confidence            466777788885443    12   2467778889999999997532111111  256666666654 345544332 11 


Q ss_pred             --------------------H-------hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC
Q 015894          175 --------------------L-------KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSI  227 (398)
Q Consensus       175 --------------------~-------~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~  227 (398)
                                          .       +-++.|.+.|++.|.+... ...    ...-..+...+.+.++.++|++.|+
T Consensus        84 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lG~~~v~~~~~-~~~----~~~~~~~~~~~~l~~l~~~a~~~Gv  158 (303)
T 3l23_A           84 DTSISDPFKAMIFKYSKEVTPKIMEYWKATAADHAKLGCKYLIQPMM-PTI----TTHDEAKLVCDIFNQASDVIKAEGI  158 (303)
T ss_dssp             CTTCSSTTTTBCCSCCTTTHHHHHHHHHHHHHHHHHTTCSEEEECSC-CCC----CSHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccCcccccccccchhhHHHHHHHHHHHHHHHHHcCCCEEEECCC-CCC----CCHHHHHHHHHHHHHHHHHHHHCCC
Confidence                                1       1245677789999987422 110    0001234566778888999999999


Q ss_pred             c--EE
Q 015894          228 P--VR  230 (398)
Q Consensus       228 ~--v~  230 (398)
                      .  +.
T Consensus       159 ~~~l~  163 (303)
T 3l23_A          159 ATGFG  163 (303)
T ss_dssp             TTCEE
T ss_pred             cceEE
Confidence            8  75

>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}

Probab=92.00  E-value=2.4  Score=40.34  Aligned_cols=145  Identities=14%  Similarity=0.152  Sum_probs=93.0

Q ss_pred             EEEEe-CCHhhHHHHHHcCCCEEEEe-ccCchHHHhhh-cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC
Q 015894          168 FPVLT-PNLKGFEAAVAAGAKEVAIF-ASASESFSKSN-INCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGM  244 (398)
Q Consensus       168 l~~l~-~n~~~ie~a~~~Gv~~v~i~-~~~Sd~~~~~~-~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r  244 (398)
                      +.++. .+.-....+.++|++.|.+. .+++-.+-..- ...|.++.+..++.+.+.+   .+.|.+.+      |..+-
T Consensus        18 i~~~~a~D~~sA~~~~~aG~~ai~vsg~s~a~~~G~pD~~~vt~~em~~~~~~I~~~~---~~pviaD~------d~Gyg   88 (275)
T 2ze3_A           18 FLLPNAWDVASARLLEAAGFTAIGTTSAGIAHARGRTDGQTLTRDEMGREVEAIVRAV---AIPVNADI------EAGYG   88 (275)
T ss_dssp             EEECEESSHHHHHHHHHHTCSCEEECHHHHHHHSCCCSSSSSCHHHHHHHHHHHHHHC---SSCEEEEC------TTCSS
T ss_pred             eeEecccCHHHHHHHHHcCCCEEEECcHHHHHhCCCCCCCCCCHHHHHHHHHHHHhhc---CCCEEeec------CCCCC
Confidence            44443 34444455667899998886 34442211111 1357888888887766654   35554322      33322


Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEccCcC-----cCCHHHHHHHHHHHHhhCC--CCeEEEEeCCc-------------cc
Q 015894          245 VPPSKVAYVSKQLYDMGCSEISLGDTIG-----VGTPGTVIPMLEAVLDAVP--VDKLAVHFHDT-------------YG  304 (398)
Q Consensus       245 ~~~~~l~~~a~~l~~~Gad~I~L~DT~G-----~~~P~~v~~lv~~l~~~~p--~~~l~~H~Hnd-------------~G  304 (398)
                      .+++.+.+.++++.+.|+..|.|-|..+     +..++++.+.|+++++.-.  ++++-+-.-.|             .-
T Consensus        89 ~~~~~~~~~v~~l~~aGaagv~iED~~~~~~k~l~~~~e~~~~I~aa~~a~~~~g~~~~i~aRtda~~~~~g~~~~~~~~  168 (275)
T 2ze3_A           89 HAPEDVRRTVEHFAALGVAGVNLEDATGLTPTELYDLDSQLRRIEAARAAIDASGVPVFLNARTDTFLKGHGATDEERLA  168 (275)
T ss_dssp             SSHHHHHHHHHHHHHTTCSEEEEECBCSSSSSCBCCHHHHHHHHHHHHHHHHHHTSCCEEEEECCTTTTTCSSSHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCcEEEECCCcCCCCCccCCHHHHHHHHHHHHHhHhhcCCCeEEEEechhhhccccccchhhHH
Confidence            3688999999999999999999999974     4556778888888887621  12343433333             23


Q ss_pred             hHHHHHHHHHHhCCCEE
Q 015894          305 QALSNILASLQMGISTV  321 (398)
Q Consensus       305 lA~ANalaAl~aGa~~V  321 (398)
                      -++.-+.+-.+|||+.|
T Consensus       169 ~ai~Ra~ay~eAGAd~i  185 (275)
T 2ze3_A          169 ETVRRGQAYADAGADGI  185 (275)
T ss_dssp             HHHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHHHCCCCEE
Confidence            46777778889999965

>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}

Probab=91.97  E-value=2.2  Score=40.35  Aligned_cols=109  Identities=15%  Similarity=0.188  Sum_probs=69.9

Q ss_pred             HHHHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc--------c------Cc-----Cc
Q 015894          214 RYRDVALAARELSIP-VRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG--------D------TI-----GV  273 (398)
Q Consensus       214 ~~~~~v~~ak~~G~~-v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~--------D------T~-----G~  273 (398)
                      ++.+..+.+|+.|-. +.+|++       .+..+++...++++.+.+.|+|.|-|.        |      ..     ..
T Consensus         4 ri~~~f~~~~~~~~~ali~yi~-------aGdP~~~~~~~~~~~l~~~GaD~iElgiPfSDP~aDGp~Iq~a~~~AL~~G   76 (267)
T 3vnd_A            4 RYQAKFAALKAQDKGAFVPFVT-------IGDPSPELSLKIIQTLVDNGADALELGFPFSDPLADGPVIQGANLRSLAAG   76 (267)
T ss_dssp             HHHHHHHHHHHHTCCEEEEEEE-------TTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCCCeEEEEEe-------CCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcC
Confidence            344555666665554 455665       233467999999999999999976655        1      11     23


Q ss_pred             CCHHHHHHHHHHHHhhCCCCeEEEEeCCcc--chHHHH-HHHHHHhCCCEEeeccccCC
Q 015894          274 GTPGTVIPMLEAVLDAVPVDKLAVHFHDTY--GQALSN-ILASLQMGISTVDSSVSGLG  329 (398)
Q Consensus       274 ~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~--GlA~AN-alaAl~aGa~~VD~Sv~GlG  329 (398)
                      .+...+-++++.+|+..+.+|+.+-+.-|.  ..++.+ +-.+.++|++.+=..-..+.
T Consensus        77 ~~~~~~~~~v~~ir~~~~~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~e  135 (267)
T 3vnd_A           77 TTSSDCFDIITKVRAQHPDMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVE  135 (267)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGG
T ss_pred             CCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHh
Confidence            455577889999998766667777666332  223333 45566899998766544443

>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A

Probab=91.89  E-value=6  Score=37.95  Aligned_cols=147  Identities=16%  Similarity=0.196  Sum_probs=92.4

Q ss_pred             CcEEEEe-CCHhhHHHHHHcCCCEEEEecc-Cch-HHHhhh-cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCC
Q 015894          166 ARFPVLT-PNLKGFEAAVAAGAKEVAIFAS-ASE-SFSKSN-INCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPV  241 (398)
Q Consensus       166 ~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~~-~Sd-~~~~~~-~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~  241 (398)
                      -.+.++. .+.-....+.++|++.|.+..+ ++- .+-..- ...|.++.+..++.+.+.+   ...|.+.      .|.
T Consensus        17 ~~i~~~~a~D~~sA~~~~~aG~~ai~vs~~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~---~~PviaD------~d~   87 (295)
T 1xg4_A           17 NPLQIVGTINANHALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVC---SLPLLVD------ADI   87 (295)
T ss_dssp             SSEEEEECSSHHHHHHHHHTTCSCEEECHHHHHHTTTCCCSSSCSCHHHHHHHHHHHHHHC---CSCEEEE------CTT
T ss_pred             CcEEEecCcCHHHHHHHHHcCCCEEEECchHhhhhhcCCCCCCCCCHHHHHHHHHHHHhhC---CCCEEec------CCc
Confidence            3455554 3555556667799999888544 221 111111 2347888888887766643   3455422      222


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCEEEEccCcC-----------cCCHHHHHHHHHHHHhhCCCCeEEEEeCCc------cc
Q 015894          242 EGMVPPSKVAYVSKQLYDMGCSEISLGDTIG-----------VGTPGTVIPMLEAVLDAVPVDKLAVHFHDT------YG  304 (398)
Q Consensus       242 ~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G-----------~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd------~G  304 (398)
                      .+-.+++.+.+.++++.+.|+..|.|-|..+           +....+..+.|+++++...+.++-+-.-.|      +-
T Consensus        88 Gyg~~~~~~~~~v~~l~~aGa~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtda~~~~gl~  167 (295)
T 1xg4_A           88 GFGSSAFNVARTVKSMIKAGAAGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTDALAVEGLD  167 (295)
T ss_dssp             CSSSSHHHHHHHHHHHHHHTCSEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECCHHHHCHH
T ss_pred             ccCCCHHHHHHHHHHHHHcCCeEEEECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEecHHhhhcCHH
Confidence            2223788999999999999999999999974           333455667777777664222233333333      23


Q ss_pred             hHHHHHHHHHHhCCCEE
Q 015894          305 QALSNILASLQMGISTV  321 (398)
Q Consensus       305 lA~ANalaAl~aGa~~V  321 (398)
                      -++.-+.+..+|||+.|
T Consensus       168 ~ai~ra~ay~eAGAd~i  184 (295)
T 1xg4_A          168 AAIERAQAYVEAGAEML  184 (295)
T ss_dssp             HHHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHHHcCCCEE
Confidence            57888899999999965

>3iv3_A Tagatose 1,6-diphosphate aldolase 2; TIM barrel, phosphate binding, tagatose-bisphosphate aldolas tagatose-1,6-bisphosphate aldolase; HET: MSE; 1.80A {Streptococcus mutans} PDB: 3mhf_A 3mhg_A 3jrk_A 3kao_A* 3myp_A 3myo_A

Probab=91.81  E-value=5.9  Score=38.72  Aligned_cols=134  Identities=9%  Similarity=0.019  Sum_probs=82.4

Q ss_pred             hHHHHHHcCCCEEEEecc--CchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHH------
Q 015894          177 GFEAAVAAGAKEVAIFAS--ASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPS------  248 (398)
Q Consensus       177 ~ie~a~~~Gv~~v~i~~~--~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~------  248 (398)
                      .++.+++.|+|-|-+.+.  ..+-. +     .+++.++.+.++.+.|++.|+++-..+.. .+.......+++      
T Consensus       115 sve~a~~~GADAVk~lv~~g~d~~~-e-----~~~~q~~~l~rv~~ec~~~GiPlllEil~-y~~~~~~~~~~~~a~~~p  187 (332)
T 3iv3_A          115 SIKRLKEAGADAVKFLLYYDVDGDP-Q-----VNVQKQAYIERIGSECQAEDIPFFLEILT-YDETISNNSSVEFAKVKV  187 (332)
T ss_dssp             CHHHHHHTTCSEEEEEEEECTTSCH-H-----HHHHHHHHHHHHHHHHHHHTCCEEEEEEE-CBTTBSCTTSHHHHTTHH
T ss_pred             CHHHHHHcCCCEEEEEEEcCCCchH-H-----HHHHHHHHHHHHHHHHHHcCCceEEEEec-cCCCCCCCcchhhhccCH
Confidence            488999999997665433  22110 0     01356888999999999999998654442 111111234444      


Q ss_pred             -HHHHHHHHH--HhCCCCEEEEccCc------CcC------CHHHHHHHHHHHHhhCCCCeEEE-EeCCccchHHHHHHH
Q 015894          249 -KVAYVSKQL--YDMGCSEISLGDTI------GVG------TPGTVIPMLEAVLDAVPVDKLAV-HFHDTYGQALSNILA  312 (398)
Q Consensus       249 -~l~~~a~~l--~~~Gad~I~L~DT~------G~~------~P~~v~~lv~~l~~~~p~~~l~~-H~Hnd~GlA~ANala  312 (398)
                       .+...++.+  .++|+|.+-+.=|.      |..      +-.+..+.++.+.+..| +|+-+ =.=-+.-.-+-..-.
T Consensus       188 ~~V~~a~R~~~~~elGaDv~Kve~p~~~~~v~g~~~~~~~y~~~ea~~~f~~~~~a~~-~P~v~lsgG~~~~~fl~~v~~  266 (332)
T 3iv3_A          188 HKVNDAMKVFSAERFGIDVLKVEVPVNMVYVEGFAEGEVVYSKEEAAQAFREQEASTD-LPYIYLSAGVSAELFQETLVF  266 (332)
T ss_dssp             HHHHHHHHHHTSGGGCCSEEEECCSSCGGGBTTTCSSCCCBCHHHHHHHHHHHHHTCS-SCEEEECTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCcCCcEEEEecCCChhhhcccccccccccHHHHHHHHHHHHhcCC-CCEEEECCCCCHHHHHHHHHH
Confidence             488999999  67799998776332      211      33455555666655544 35432 322344455666678


Q ss_pred             HHHhCC
Q 015894          313 SLQMGI  318 (398)
Q Consensus       313 Al~aGa  318 (398)
                      |+++|+
T Consensus       267 A~~aGa  272 (332)
T 3iv3_A          267 AHKAGA  272 (332)
T ss_dssp             HHHHTC
T ss_pred             HHHcCC
Confidence            999999

>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...

Probab=91.81  E-value=2.8  Score=41.26  Aligned_cols=121  Identities=15%  Similarity=0.179  Sum_probs=77.5

Q ss_pred             CHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecC---------------CCC-------------------CCCCH-----
Q 015894          207 TIEDSLIRYRDVALAARELSIPVRGYLSCVVGC---------------PVE-------------------GMVPP-----  247 (398)
Q Consensus       207 s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~---------------~~~-------------------~r~~~-----  247 (398)
                      ..++.++..+.+++.+++.|-.+.+.|... |-               |-.                   ...+|     
T Consensus        75 ~~d~~i~~~~~l~~~vh~~g~~i~~QL~H~-Gr~~~~~~~~~g~~~~apS~i~~~~~~~~~~~~g~~~~~~~~~p~~mt~  153 (364)
T 1vyr_A           75 HSPEQIAAWKKITAGVHAEDGRIAVQLWHT-GRISHSSIQPGGQAPVSASALNANTRTSLRDENGNAIRVDTTTPRALEL  153 (364)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTCCEEEEEECC-TTSSCGGGSGGGCCCEESSSCCCCSEEEEECTTSCEEEEECCCCEECCG
T ss_pred             CCHHHHHHHHHHHHHHHhcCCeEEEEeccC-CcccCcccccCCCccccCCCcccccccccccccccccccCCCCCCcCCH
Confidence            345667778888888899998887777641 10               000                   00122     


Q ss_pred             -------HHHHHHHHHHHhCCCCEEEE-------------------ccCcCcCC---HHHHHHHHHHHHhhCCCCeEEE-
Q 015894          248 -------SKVAYVSKQLYDMGCSEISL-------------------GDTIGVGT---PGTVIPMLEAVLDAVPVDKLAV-  297 (398)
Q Consensus       248 -------~~l~~~a~~l~~~Gad~I~L-------------------~DT~G~~~---P~~v~~lv~~l~~~~p~~~l~~-  297 (398)
                             +.+.+.++.+.++|+|.|-|                   .|-.|...   +..+.++++++|+.++..+|++ 
T Consensus       154 ~eI~~~i~~f~~aA~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~vr  233 (364)
T 1vyr_A          154 DEIPGIVNDFRQAVANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIR  233 (364)
T ss_dssp             GGHHHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEEE
Confidence                   56777788889999998887                   24455432   3457788999999996327888 


Q ss_pred             ----EeCCc---cch----HHHHHHHHHHhCCCEEeeccccC
Q 015894          298 ----HFHDT---YGQ----ALSNILASLQMGISTVDSSVSGL  328 (398)
Q Consensus       298 ----H~Hnd---~Gl----A~ANalaAl~aGa~~VD~Sv~Gl  328 (398)
                          ..+++   .+.    ++.-+.+.-++|++.|+.+..+.
T Consensus       234 ls~~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~  275 (364)
T 1vyr_A          234 VSPIGTFQNVDNGPNEEADALYLIEELAKRGIAYLHMSETDL  275 (364)
T ss_dssp             ECCSSCBTTBCCCTTHHHHHHHHHHHHHHTTCSEEEEECCBT
T ss_pred             EccccccccccCCCCCHHHHHHHHHHHHHhCCCEEEEecCcc
Confidence                22332   122    33334455579999999986543

>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4

Probab=91.77  E-value=4  Score=38.69  Aligned_cols=108  Identities=14%  Similarity=0.225  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCc-------------------Cc
Q 015894          214 RYRDVALAARELSIP-VRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTI-------------------GV  273 (398)
Q Consensus       214 ~~~~~v~~ak~~G~~-v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~-------------------G~  273 (398)
                      ++.+..+.+|+.|-. +.+|++       .+.-+++...++++.+.+.|+|.|-|.=-.                   ..
T Consensus         6 ri~~~f~~~~~~~~~ali~yi~-------aGdP~~~~~~~~~~~l~~~GaD~iElGiPfSDP~aDGpvIq~a~~rAL~~G   78 (271)
T 3nav_A            6 RYQALFQRLSAAQQGAFVPFVT-------IGDPNPEQSLAIMQTLIDAGADALELGMPFSDPLADGPTIQGANLRALAAK   78 (271)
T ss_dssp             HHHHHHHHHHHTTBCEEEEEEE-------TTSSCHHHHHHHHHHHHHTTCSSEEEECCCCCGGGCCSHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhcCCCeEEEEEe-------CCCCCHHHHHHHHHHHHHcCCCEEEECCCCCCCCCCCHHHHHHHHHHHHcC
Confidence            345556666766654 445555       233468899999999999999977654221                   22


Q ss_pred             CCHHHHHHHHHHHHhhCCCCeEEEEeCCc--cchHHH-HHHHHHHhCCCEEeeccccC
Q 015894          274 GTPGTVIPMLEAVLDAVPVDKLAVHFHDT--YGQALS-NILASLQMGISTVDSSVSGL  328 (398)
Q Consensus       274 ~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd--~GlA~A-NalaAl~aGa~~VD~Sv~Gl  328 (398)
                      .+..++-++++.+|+..+.+|+.+-+.-|  +..++. -+..+.++|++.+=..=..+
T Consensus        79 ~~~~~~~~~v~~~r~~~~~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~  136 (271)
T 3nav_A           79 TTPDICFELIAQIRARNPETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPT  136 (271)
T ss_dssp             CCHHHHHHHHHHHHHHCTTSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCG
T ss_pred             CCHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCH
Confidence            44556778999999886777888766544  233333 35566789999765544444

>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A

Probab=91.77  E-value=1  Score=43.30  Aligned_cols=82  Identities=23%  Similarity=0.302  Sum_probs=70.6

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcCc---CCHHHHHHHHHHHHhhC-CCCeEEEEe-CCccchHHHHHHHHHHhC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGV---GTPGTVIPMLEAVLDAV-PVDKLAVHF-HDTYGQALSNILASLQMG  317 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~-p~~~l~~H~-Hnd~GlA~ANalaAl~aG  317 (398)
                      +..|.+.+.++++.+.+.|++.|.++-|.|-   ++.++-.++++.+.+.. +.+++-+|. +|+..-++..+..|-++|
T Consensus        31 g~iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~G  110 (304)
T 3l21_A           31 GSLDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEG  110 (304)
T ss_dssp             SCBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHHcC
Confidence            5789999999999999999999999999996   56788888888888765 356788876 789999999999999999


Q ss_pred             CCEEeec
Q 015894          318 ISTVDSS  324 (398)
Q Consensus       318 a~~VD~S  324 (398)
                      |+.|=+.
T Consensus       111 adavlv~  117 (304)
T 3l21_A          111 AHGLLVV  117 (304)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEC
Confidence            9977554

>3pao_A Adenosine deaminase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; HET: ADE; 2.49A {Pseudomonas aeruginosa} PDB: 3pan_A* 3ou8_A* 3pbm_A*

Probab=91.61  E-value=2.8  Score=40.65  Aligned_cols=131  Identities=13%  Similarity=0.080  Sum_probs=86.0

Q ss_pred             HHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHH-hCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894          179 EAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAR-ELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL  257 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak-~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l  257 (398)
                      +.+.+-|+..+-++..  +. ....-|.+.++.++.+.+.++.++ +.|+.++.-+++.      -..+++...+.++.+
T Consensus        85 ~~~~~dgV~y~Eir~~--P~-~~~~~gl~~~~~v~~v~~~~~~a~~~~gi~~~lI~~~~------R~~~~~~a~~~~~~a  155 (326)
T 3pao_A           85 QKCKAQNVVHVEPFFD--PQ-THTDRGIPFEVVLAGIRAALRDGEKLLGIRHGLILSFL------RHLSEEQAQKTLDQA  155 (326)
T ss_dssp             HHHHHTTEEEECCEEC--HH-HHHTTTCCHHHHHHHHHHHHHHHHHHHCCEECCEEEEE------TTSCHHHHHHHHHHH
T ss_pred             HHHHHcCCeEEEEEEC--hH-HhccCCCCHHHHHHHHHHHHHHHHhhCceEEEEEEEeC------CCCCHHHHHHHHHHH
Confidence            4556678776655443  33 223457889999998888888775 5688776444421      124667666666666


Q ss_pred             HhC--CCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHH-hCCCEEe
Q 015894          258 YDM--GCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQ-MGISTVD  322 (398)
Q Consensus       258 ~~~--Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~-aGa~~VD  322 (398)
                      .++  ++..|-|+-.=....|....+.++..++.  +.++.+|+..+.+  ..+...|+. .|+++|+
T Consensus       156 ~~~~~~vvG~dL~g~E~~~~~~~~~~~~~~A~~~--gl~~~~HagE~~~--~~~i~~al~~lg~~rig  219 (326)
T 3pao_A          156 LPFRDAFIAVGLDSSEVGHPPSKFQRVFDRARSE--GFLTVAHAGEEGP--PEYIWEALDLLKVERID  219 (326)
T ss_dssp             GGGGGGCSEEEEESCCTTCCGGGGHHHHHHHHHT--TCEECEEESSSSC--HHHHHHHHHTTCCSSEE
T ss_pred             hhccccceeeCCCCCCCCCCHHHHHHHHHHHHHc--CCceeeecCCCCC--HHHHHHHHhcCCCceee
Confidence            554  45556654322345678888888877663  4678889987755  467778895 8998763

>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}

Probab=91.61  E-value=2.6  Score=41.65  Aligned_cols=133  Identities=19%  Similarity=0.104  Sum_probs=81.8

Q ss_pred             HHHHHcCCCEEEEeccC--------chH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-CC-cEEEEEeeeecCCCC-CCC
Q 015894          179 EAAVAAGAKEVAIFASA--------SES--FSKSNINCTIEDSLIRYRDVALAAREL-SI-PVRGYLSCVVGCPVE-GMV  245 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~~--------Sd~--~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~-~v~~~l~~~fg~~~~-~r~  245 (398)
                      ++|.++|.|.|.|-..-        |+.  .....+|-|.+.-.+.+.++++.+|+. |- .|.+-++..-..... ...
T Consensus       160 ~~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGslenR~rf~~eiv~aVr~~vg~~~v~vRls~~~~~~g~~~~~  239 (362)
T 4ab4_A          160 ENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLAPRADAHDMGDAD  239 (362)
T ss_dssp             HHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCTT
T ss_pred             HHHHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHhcCCCceEEEeeccccccccCCCC
Confidence            45678999999986552        232  223345667777777778888887765 43 455445421000000 112


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhC-CCEEe
Q 015894          246 PPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMG-ISTVD  322 (398)
Q Consensus       246 ~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aG-a~~VD  322 (398)
                      +.+...++++.+.++|++.|.+....  ..|    ++++.+++.++..-+..-.     .....+..+++.| ||.|-
T Consensus       240 ~~~~~~~la~~l~~~Gvd~i~v~~~~--~~~----~~~~~ik~~~~iPvi~~Gg-----it~e~a~~~l~~g~aD~V~  306 (362)
T 4ab4_A          240 RAETFTYVARELGKRGIAFICSRERE--ADD----SIGPLIKEAFGGPYIVNER-----FDKASANAALASGKADAVA  306 (362)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEECCC--CTT----CCHHHHHHHHCSCEEEESS-----CCHHHHHHHHHTTSCSEEE
T ss_pred             cHHHHHHHHHHHHHhCCCEEEECCCC--CCH----HHHHHHHHHCCCCEEEeCC-----CCHHHHHHHHHcCCccEEE
Confidence            35678899999999999999886532  112    4677778776542233322     2356777888888 77653

>1vyr_A Pentaerythritol tetranitrate reductase; oxidoreductase, flavoenzyme, explosive degradation, steroid binding; HET: FMN TNF; 0.9A {Enterobacter cloacae} SCOP: c.1.4.1 PDB: 1gvq_A* 1gvr_A* 1gvs_A* 1h50_A* 1h51_A* 1h60_A* 1h61_A* 1h62_A* 1h63_A* 1gvo_A* 2aba_A* 3f03_K* 3kft_A* 3p7y_A* 3p80_A* 3p81_A* 3p62_A* 3p8i_A* 2abb_A* 3p67_A* ...

Probab=91.61  E-value=2.4  Score=41.75  Aligned_cols=139  Identities=16%  Similarity=0.073  Sum_probs=84.1

Q ss_pred             HHHHHcCCCEEEEeccC--------chH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-CC-cEEEEEeee--ecCCCCCC
Q 015894          179 EAAVAAGAKEVAIFASA--------SES--FSKSNINCTIEDSLIRYRDVALAAREL-SI-PVRGYLSCV--VGCPVEGM  244 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~~--------Sd~--~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~-~v~~~l~~~--fg~~~~~r  244 (398)
                      ++|.++|.|.|.|-..-        |+.  .....+|-+.++-.+.+.++++.+|+. |- .|.+-++..  +.....+.
T Consensus       168 ~~a~~aGfDgVeih~a~GyLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~~v~vrls~~~~~~~~~~~~  247 (364)
T 1vyr_A          168 ANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGP  247 (364)
T ss_dssp             HHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCT
T ss_pred             HHHHHcCCCEEEEcCccchHHHhccCCcccccCCcCCcchhcChhhHHHHHHHHHHhcCCCcEEEEEccccccccccCCC
Confidence            35578999999985431        121  112345566777777788888888764 42 455444431  10000123


Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEccCc-CcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhC-CCEEe
Q 015894          245 VPPSKVAYVSKQLYDMGCSEISLGDTI-GVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMG-ISTVD  322 (398)
Q Consensus       245 ~~~~~l~~~a~~l~~~Gad~I~L~DT~-G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aG-a~~VD  322 (398)
                      .+.+...++++.+.++|++.|.+.... -...+. -.++++.+++.++. ||..=.--    ....+..+++.| |+.|-
T Consensus       248 ~~~~~~~~~a~~l~~~G~d~i~v~~~~~~~~~~~-~~~~~~~v~~~~~i-Pvi~~Ggi----t~~~a~~~l~~g~aD~V~  321 (364)
T 1vyr_A          248 NEEADALYLIEELAKRGIAYLHMSETDLAGGKPY-SEAFRQKVRERFHG-VIIGAGAY----TAEKAEDLIGKGLIDAVA  321 (364)
T ss_dssp             THHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCC-CHHHHHHHHHHCCS-EEEEESSC----CHHHHHHHHHTTSCSEEE
T ss_pred             CCHHHHHHHHHHHHHhCCCEEEEecCcccCCCcc-cHHHHHHHHHHCCC-CEEEECCc----CHHHHHHHHHCCCccEEE
Confidence            467788899999999999999886521 000111 13567788888753 44433222    267788888988 88764


Q ss_pred             e
Q 015894          323 S  323 (398)
Q Consensus       323 ~  323 (398)
                      .
T Consensus       322 ~  322 (364)
T 1vyr_A          322 F  322 (364)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2pgf_A Adenosine deaminase; metallo-dependent hydrolase, structural genomics, medical ST genomics of pathogenic protozoa consortium, MSGPP; HET: MSE ADN; 1.89A {Plasmodium vivax} PDB: 2pgr_A* 2qvn_A* 3ewc_A* 3ewd_A* 2amx_A

Probab=91.61  E-value=8.2  Score=37.80  Aligned_cols=132  Identities=11%  Similarity=-0.013  Sum_probs=78.5

Q ss_pred             hHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHH-hC--CCcEEEEEeeeecCCCCCCCCHHHHHHH
Q 015894          177 GFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAR-EL--SIPVRGYLSCVVGCPVEGMVPPSKVAYV  253 (398)
Q Consensus       177 ~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak-~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~  253 (398)
                      .++.+++.|+..+.+++.  +.+.....+.+.++.++.+.+.++.++ +.  |+.++..+++.    ..  .+++...+.
T Consensus       120 ~l~e~~~~GV~y~E~r~d--p~~~~~~~gl~~~~~~~a~~~~~~~a~~~~~~gi~~~li~~~~----r~--~~~~~~~~~  191 (371)
T 2pgf_A          120 AVFNKYKEGVVLMEFRYS--PTFVAFKYNLDIELIHQAIVKGIKEVVELLDHKIHVALMCIGD----TG--HEAANIKAS  191 (371)
T ss_dssp             HHHHHHHHTEEEEEEEEC--HHHHHTTTTCCHHHHHHHHHHHHHHHHHHTTTSSEEEEEEEEE----ES--STTCCHHHH
T ss_pred             HHHHHHHCCCEEEEEEEC--cccccccCCCCHHHHHHHHHHHHHHHHHHccCCCEEEEEEEec----CC--CCHHHHHHH
Confidence            356667889988877653  322123457788888888877777665 56  87766444432    11  122223333


Q ss_pred             HHHHHh--CCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCcc-chHH-HHHHHHHHh-CCCEE
Q 015894          254 SKQLYD--MGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTY-GQAL-SNILASLQM-GISTV  321 (398)
Q Consensus       254 a~~l~~--~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~-GlA~-ANalaAl~a-Ga~~V  321 (398)
                      ++.+.+  -++-.+.++..-..  |..+.+.++..++.  +.++.+|++.+. | .. .+...|+.. |+++|
T Consensus       192 ~~~a~~~~~~vvg~dl~g~e~~--~~~~~~~~~~A~~~--gl~~~~HagE~~~~-~~~~~i~~al~~lg~~ri  259 (371)
T 2pgf_A          192 ADFCLKHKADFVGFDHGGHEVD--LKEYKEIFDYVRES--GVPLSVHAGEDVTL-PNLNTLYSAIQVLKVERI  259 (371)
T ss_dssp             HHHHHHTTTTEEEEEEEESCCC--GGGGHHHHHHHHHT--TCCBEEEESCCTTS-SSSHHHHHHHHTSCCSEE
T ss_pred             HHHHHhCCCCEEEEecCCCccc--HHHHHHHHHHHHHc--CCcEEEeeCCCCCC-CchHHHHHHHhccCCCEE
Confidence            333333  22333333322122  88888888887764  467999999873 2 22 566778886 98876

>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1

Probab=91.59  E-value=2.1  Score=37.84  Aligned_cols=158  Identities=11%  Similarity=0.086  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-cCCcEEEEeCCHhhHHHHHHcCCCEEEEeccCchH
Q 015894          120 VKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-EGARFPVLTPNLKGFEAAVAAGAKEVAIFASASES  198 (398)
Q Consensus       120 ~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~  198 (398)
                      +-.+.++.+.+.|++.|++..+..+.     .+..+..+.+++. .......++.  ..++.+.++|++.|++...  +.
T Consensus        27 ~~~~~~~~~~~~G~~~i~l~~~~~~~-----~~~~~~~~~l~~~~~~~~v~v~v~--~~~~~a~~~gad~v~l~~~--~~   97 (215)
T 1xi3_A           27 PEVESVREALEGGATAIQMRIKNAPT-----REMYEIGKTLRQLTREYDALFFVD--DRVDVALAVDADGVQLGPE--DM   97 (215)
T ss_dssp             CHHHHHHHHHHTTCSEEEECCCSCCH-----HHHHHHHHHHHHHHHHTTCEEEEE--SCHHHHHHHTCSEEEECTT--SC
T ss_pred             hHHHHHHHHHHCCCCEEEECCCCCCH-----HHHHHHHHHHHHHHHHcCCeEEEc--ChHHHHHHcCCCEEEECCc--cC
Confidence            34678889999999999998642110     0112222233321 1122222222  5678899999999976422  10


Q ss_pred             HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE---ccCcCc--
Q 015894          199 FSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL---GDTIGV--  273 (398)
Q Consensus       199 ~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L---~DT~G~--  273 (398)
                              +.    +.+    +..+ .++.+.  ++.         .+++.+    ..+.+.|+|.|.+   -+|.+-  
T Consensus        98 --------~~----~~~----~~~~-~~~~~~--v~~---------~t~~e~----~~~~~~g~d~i~~~~~~~~~~~~~  145 (215)
T 1xi3_A           98 --------PI----EVA----KEIA-PNLIIG--ASV---------YSLEEA----LEAEKKGADYLGAGSVFPTKTKED  145 (215)
T ss_dssp             --------CH----HHH----HHHC-TTSEEE--EEE---------SSHHHH----HHHHHHTCSEEEEECSSCC----C
T ss_pred             --------CH----HHH----HHhC-CCCEEE--Eec---------CCHHHH----HHHHhcCCCEEEEcCCccCCCCCC
Confidence                    11    111    1112 344332  221         244443    2355789999876   233211  


Q ss_pred             CCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894          274 GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       274 ~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S  324 (398)
                      ..|.. .+.++.+++.. ..|+..    .-|....|+..++++|++.|++.
T Consensus       146 ~~~~~-~~~l~~l~~~~-~~pvia----~GGI~~~nv~~~~~~Ga~gv~vg  190 (215)
T 1xi3_A          146 ARVIG-LEGLRKIVESV-KIPVVA----IGGINKDNAREVLKTGVDGIAVI  190 (215)
T ss_dssp             CCCCH-HHHHHHHHHHC-SSCEEE----ESSCCTTTHHHHHTTTCSEEEES
T ss_pred             CCCcC-HHHHHHHHHhC-CCCEEE----ECCcCHHHHHHHHHcCCCEEEEh
Confidence            12222 34456666554 234444    34666678888888999988865

>2zvr_A Uncharacterized protein TM_0416; hyperthermophIle, ketohexose 3-epimeras tagatose 3-epimerase, isomerase; 2.20A {Thermotoga maritima}

Probab=91.58  E-value=7.7  Score=35.72  Aligned_cols=191  Identities=14%  Similarity=0.084  Sum_probs=92.3

Q ss_pred             HHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC--------------CH--------
Q 015894          118 AVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP--------------NL--------  175 (398)
Q Consensus       118 ~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~--------------n~--------  175 (398)
                      ...-.+.++.+.++|++.||+.....     .-.+.+++.+.+++ .+.++.++..              +.        
T Consensus        40 ~~~~~~~l~~~~~~G~~~vEl~~~~~-----~~~~~~~~~~~l~~-~gl~~~~~~~~~p~~~~~~~l~~~d~~~r~~~~~  113 (290)
T 2zvr_A           40 KGDLRKGMELAKRVGYQAVEIAVRDP-----SIVDWNEVKILSEE-LNLPICAIGTGQAYLADGLSLTHPNDEIRKKAIE  113 (290)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEECSCG-----GGSCHHHHHHHHHH-HTCCEEEEECTHHHHTTCCCTTCSSHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHhCCCEEEEcCCCc-----chhhHHHHHHHHHH-cCCeEEEEeccCccccCCCCCCCCCHHHHHHHHH
Confidence            34456678888899999999986421     11355666666553 2344433211              11        


Q ss_pred             ---hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH
Q 015894          176 ---KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAY  252 (398)
Q Consensus       176 ---~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~  252 (398)
                         +.++.|.+.|++.|.....-.      .-+.+.++.++.+.+.++.+.+..-.|...+...-..+...-.+++.+.+
T Consensus       114 ~~~~~i~~A~~lG~~~v~~~~~g~------~~~~~~~~~~~~~~~~l~~l~~~a~~v~l~lEn~~~~~~~~~~~~~~~~~  187 (290)
T 2zvr_A          114 RVVKHTEVAGMFGALVIIGLVRGR------REGRSYEETEELFIESMKRLLELTEHAKFVIEPLNRYETDFINTIDDALR  187 (290)
T ss_dssp             HHHHHHHHHHHHTCEEEESGGGCC------CTTSCHHHHHHHHHHHHHHHHHHCSSCCEEECCCCTTTCSSCCSHHHHHH
T ss_pred             HHHHHHHHHHHcCCCEEEecCCCC------CCCcCHHHHHHHHHHHHHHHHHHhccCEEEEEeCCCcCccccCCHHHHHH
Confidence               123456667888776211000      01224455555544444333322211332232110001112245666666


Q ss_pred             HHHHHHhCCCCEEE-EccCcCcCC-HHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCC
Q 015894          253 VSKQLYDMGCSEIS-LGDTIGVGT-PGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGG  330 (398)
Q Consensus       253 ~a~~l~~~Gad~I~-L~DT~G~~~-P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGe  330 (398)
                      +++.+   +.+.+. .-|+.=... -.+..+.++.+.   + --.++|+||..                          .
T Consensus       188 l~~~~---~~~~vgl~~D~~h~~~~g~d~~~~l~~~~---~-~i~~vHl~D~~--------------------------r  234 (290)
T 2zvr_A          188 ILRKI---NSNRVGILADTFHMNIEEVNIPESLKRAG---E-KLYHFHVADSN--------------------------R  234 (290)
T ss_dssp             HHHHH---CCTTEEEEEEHHHHHHHCSSHHHHHHHHG---G-GEEEEEECCTT--------------------------S
T ss_pred             HHHHc---CCCCEEEEEehhHhhhcCCCHHHHHHHhh---c-cEEEEEEcCCC--------------------------C
Confidence            65543   323222 225421110 012223333332   2 23678888841                          1


Q ss_pred             CCCCCCCCCCccHHHHHHHHHhCCCC
Q 015894          331 CPYAKGASGNVATEDVVYMLNGLGVR  356 (398)
Q Consensus       331 cp~a~graGNa~lE~vv~~L~~~Gi~  356 (398)
                      +  .+| .|..+.+.++..|++.|++
T Consensus       235 ~--~~G-~G~id~~~~~~~L~~~gy~  257 (290)
T 2zvr_A          235 W--APG-CGHFDFRSVFNTLKEIGYN  257 (290)
T ss_dssp             S--STT-SSCCCHHHHHHHHHHTTCC
T ss_pred             C--CCC-CcccCHHHHHHHHHHcCCC
Confidence            1  123 6889999999999987764

>3bdk_A D-mannonate dehydratase; xylose isomerase-like TIM barrel, lyase; HET: DNO; 2.50A {Streptococcus suis} PDB: 3ban_A* 3dbn_A* 3fvm_A

Probab=91.53  E-value=4.8  Score=40.04  Aligned_cols=19  Identities=21%  Similarity=0.372  Sum_probs=16.8

Q ss_pred             CCCccHHHHHHHHHhCCCC
Q 015894          338 SGNVATEDVVYMLNGLGVR  356 (398)
Q Consensus       338 aGNa~lE~vv~~L~~~Gi~  356 (398)
                      .|.++...++.+|++.|++
T Consensus       306 ~G~vD~~~i~~aL~~~gY~  324 (386)
T 3bdk_A          306 AGDIDMNAVVKLLVDYDWQ  324 (386)
T ss_dssp             GSSCCHHHHHHHHHHTTCC
T ss_pred             CCCcCHHHHHHHHHHhCCc
Confidence            7899999999999987763

>3eoo_A Methylisocitrate lyase; seattle structural genomics center for infectious disease, ssgcid; 2.90A {Burkholderia pseudomallei 1655} SCOP: c.1.12.7

Probab=91.51  E-value=2.1  Score=41.19  Aligned_cols=208  Identities=12%  Similarity=0.088  Sum_probs=117.4

Q ss_pred             HHHHHhcCCCEEEEecC-CC--CCcccC--CCCHHHHHHHHHhcc-CCcEEEEe--C----CH----hhHHHHHHcCCCE
Q 015894          125 IKLLVSSGLAVVEATSF-VS--PKWVPQ--LADAKDVMAAIQNVE-GARFPVLT--P----NL----KGFEAAVAAGAKE  188 (398)
Q Consensus       125 a~~L~~aGv~~IEvG~~-~~--~~~~p~--~~D~~~v~~~i~~~~-~~~l~~l~--~----n~----~~ie~a~~~Gv~~  188 (398)
                      ++.++++|++.|=+|.. .+  ....|.  .-+.++++..++.+. .+.+.+++  +    +.    +-++...++|+.-
T Consensus        35 A~l~e~aGf~ai~vs~~s~a~~~~G~pD~~~vt~~em~~~~~~I~r~~~~PviaD~d~Gyg~~~~v~~~v~~l~~aGaag  114 (298)
T 3eoo_A           35 AKMAEAVGFKAVYLSGGGVAANSLGIPDLGISTMDDVLVDANRITNATNLPLLVDIDTGWGGAFNIARTIRSFIKAGVGA  114 (298)
T ss_dssp             HHHHHHHTCSCEEECHHHHHHHTTCCCSSSCCCHHHHHHHHHHHHHHCCSCEEEECTTCSSSHHHHHHHHHHHHHTTCSE
T ss_pred             HHHHHHcCCCEEEECcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhhcCCeEEEECCCCCCCHHHHHHHHHHHHHhCCeE
Confidence            45678899999999852 11  111221  134567766666432 12223333  2    22    2356667899999


Q ss_pred             EEEeccCchH---HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE
Q 015894          189 VAIFASASES---FSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEI  265 (398)
Q Consensus       189 v~i~~~~Sd~---~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I  265 (398)
                      |+|-..+.+-   |...+-=.+.++..++++.+++.++.-++.+.+- +.++.     ....+..++=++...++|||.|
T Consensus       115 v~iEDq~~~k~cGh~~gk~l~~~~e~~~ri~Aa~~A~~~~~~~I~AR-TDa~~-----~~gldeai~Ra~ay~~AGAD~i  188 (298)
T 3eoo_A          115 VHLEDQVGQKRCGHRPGKECVPAGEMVDRIKAAVDARTDETFVIMAR-TDAAA-----AEGIDAAIERAIAYVEAGADMI  188 (298)
T ss_dssp             EEEECBCCCCCTTCCCCCCBCCHHHHHHHHHHHHHHCSSTTSEEEEE-ECTHH-----HHHHHHHHHHHHHHHHTTCSEE
T ss_pred             EEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHhccCCCeEEEEe-ehhhh-----hcCHHHHHHHHHhhHhcCCCEE
Confidence            9999887531   1110111367888888866665433223333210 11110     0123445555666778999999


Q ss_pred             EEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHH
Q 015894          266 SLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATED  345 (398)
Q Consensus       266 ~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~  345 (398)
                      .+.   |.-+++++.++.+.+.  .|- .+-+-..+...+  -+.-.--++|+++|-....++        |+-+.++++
T Consensus       189 f~~---~~~~~ee~~~~~~~~~--~Pl-~~n~~~~g~tp~--~~~~eL~~lGv~~v~~~~~~~--------raa~~a~~~  252 (298)
T 3eoo_A          189 FPE---AMKTLDDYRRFKEAVK--VPI-LANLTEFGSTPL--FTLDELKGANVDIALYCCGAY--------RAMNKAALN  252 (298)
T ss_dssp             EEC---CCCSHHHHHHHHHHHC--SCB-EEECCTTSSSCC--CCHHHHHHTTCCEEEECSHHH--------HHHHHHHHH
T ss_pred             EeC---CCCCHHHHHHHHHHcC--CCe-EEEeccCCCCCC--CCHHHHHHcCCeEEEEchHHH--------HHHHHHHHH
Confidence            885   3457888888888774  342 111111111111  123344567999998877766        677888899


Q ss_pred             HHHHHHhCC
Q 015894          346 VVYMLNGLG  354 (398)
Q Consensus       346 vv~~L~~~G  354 (398)
                      ++..+++.|
T Consensus       253 ~~~~i~~~g  261 (298)
T 3eoo_A          253 FYETVRRDG  261 (298)
T ss_dssp             HHHHHHHHS
T ss_pred             HHHHHHHcC
Confidence            988887644

>3qm3_A Fructose-bisphosphate aldolase; structural genomics, center for structural genomics of infec diseases, csgid, TIM beta/alpha-barrel, lyase; 1.85A {Campylobacter jejuni} SCOP: c.1.10.2

Probab=91.50  E-value=2.3  Score=42.03  Aligned_cols=197  Identities=16%  Similarity=0.136  Sum_probs=115.9

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcc--cCCCCHH-----HHHHHHH---hccCCcEEEEeC---C--HhhHH
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWV--PQLADAK-----DVMAAIQ---NVEGARFPVLTP---N--LKGFE  179 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~--p~~~D~~-----~v~~~i~---~~~~~~l~~l~~---n--~~~ie  179 (398)
                      ....+....++++-.+.+-+.|=-.+...-++.  ..+....     .....++   +.-++.+....-   .  .+.++
T Consensus        39 v~n~e~~~Avl~AAee~~sPvIlq~s~g~~~~~~g~~~~~~~~~ga~~~a~~v~~~A~~~~VPVaLHlDHg~~~~~~~i~  118 (357)
T 3qm3_A           39 VVGTDSINAVLEAAKKVNSPVIIQFSNGGAKFYAGKNCPNGEVLGAISGAKHVHLLAKAYGVPVILHTDHAARKLLPWID  118 (357)
T ss_dssp             CCSHHHHHHHHHHHHHHTSCEEEEECHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGGHHHHH
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhccCccchhhHHHHHHHHHHHHHHHHHHCCCcEEEECCCCCccchHHHH
Confidence            467788888999999999987655432110110  0011111     0011122   112344444332   2  23344


Q ss_pred             HHHH-----------cCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC------
Q 015894          180 AAVA-----------AGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE------  242 (398)
Q Consensus       180 ~a~~-----------~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~------  242 (398)
                      .+++           .|...|.+=  .|.        .+.+|.++.-++++++|++.|+.|++.|-..-|.++.      
T Consensus       119 ~~i~a~~~~~~~~~~~GFtSVMiD--gS~--------lp~eENI~~Tk~vv~~ah~~gvsVEaELG~igG~Edgv~~~~~  188 (357)
T 3qm3_A          119 GLIEANAQYKKTHGQALFSSHMLD--LSE--------ESLEENLSTCEVYLQKLDALGVALEIELGCTGGEEDGVDNTGI  188 (357)
T ss_dssp             HHHHHHHHHHHHHSSCSCSEEECC--CTT--------SCHHHHHHHHHHHHHHHHHHTCEEEEECCCCCC-----CCSST
T ss_pred             HHHHHhHHHHhhhcCCCCCEEEEe--CCC--------CCHHHHHHHHHHHHHHHHHcCCeEEEEeeeeccccCCcccccc
Confidence            4443           467777652  222        2578999999999999999999999887765444432      


Q ss_pred             ----CCCCHHHHHHHHHHHHhC-CCCEEEE--ccCcCc-------CCHHHHHHHHHHHHhhC--C---CCeEEEEeCCcc
Q 015894          243 ----GMVPPSKVAYVSKQLYDM-GCSEISL--GDTIGV-------GTPGTVIPMLEAVLDAV--P---VDKLAVHFHDTY  303 (398)
Q Consensus       243 ----~r~~~~~l~~~a~~l~~~-Gad~I~L--~DT~G~-------~~P~~v~~lv~~l~~~~--p---~~~l~~H~Hnd~  303 (398)
                          -.++|+...+++++.-.. |+|.+.+  .-.=|.       +.|..+.++-+.+++.+  |   .+||.+|+=.  
T Consensus       189 ~~~~~yT~Peea~~Fv~~tg~~~gvD~LAvaiGt~HG~Yk~g~p~L~~~~L~~i~~~i~~~~~~~~~~~vpLVlHGgS--  266 (357)
T 3qm3_A          189 DNSKLYTQPEDVALAYERLGKISDKFSIAASFGNVHGVYKPGNVSLQPEILKNSQKFVKDKFALNSDKPINFVFHGGS--  266 (357)
T ss_dssp             TCTTTSCCHHHHHHHHHHHTTTCSCEEEECCSSCCCSSCCSSCCCCCTHHHHHHHHHHHHHTTCSCSCCSCEEECSCT--
T ss_pred             ccccccCCHHHHHHHHHHhCCCCcccEEEEecCCccCCcCCCCCCCCHHHHHHHHHHHHHHhccccCCCCcEEEeCCC--
Confidence                148899988888765221 3454333  222222       24566666666666654  2   3678887754  


Q ss_pred             chHHHHHHHHHHhCCCEEee
Q 015894          304 GQALSNILASLQMGISTVDS  323 (398)
Q Consensus       304 GlA~ANalaAl~aGa~~VD~  323 (398)
                      |........|++.|+.-|+.
T Consensus       267 G~p~e~i~~ai~~GV~KiNi  286 (357)
T 3qm3_A          267 GSELKDIKNAVSYGVIKMNI  286 (357)
T ss_dssp             TCCHHHHHHHHHTTEEEEEE
T ss_pred             CCCHHHHHHHHHCCceEEEe
Confidence            88889999999999876644

>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*

Probab=91.44  E-value=0.82  Score=44.96  Aligned_cols=70  Identities=10%  Similarity=0.080  Sum_probs=51.2

Q ss_pred             HHHHHHHhC--CCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeecccc
Q 015894          252 YVSKQLYDM--GCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSG  327 (398)
Q Consensus       252 ~~a~~l~~~--Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~G  327 (398)
                      +.++.+.+.  |++.|.+-=+.|  .|..+.+.++.+++.+|+++|.+..    .+....+..|+++||+.|+++..|
T Consensus       121 ~~~~~l~~~~~g~~~i~i~~~~g--~~~~~~~~i~~lr~~~~~~~vi~g~----v~t~e~A~~a~~aGaD~I~v~~g~  192 (351)
T 2c6q_A          121 EQLEQILEAIPQVKYICLDVANG--YSEHFVEFVKDVRKRFPQHTIMAGN----VVTGEMVEELILSGADIIKVGIGP  192 (351)
T ss_dssp             HHHHHHHHHCTTCCEEEEECSCT--TBHHHHHHHHHHHHHCTTSEEEEEE----ECSHHHHHHHHHTTCSEEEECSSC
T ss_pred             HHHHHHHhccCCCCEEEEEecCC--CcHHHHHHHHHHHHhcCCCeEEEEe----CCCHHHHHHHHHhCCCEEEECCCC
Confidence            345556665  899877632334  5677889999999999877887653    344677889999999999997543

>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis}

Probab=91.37  E-value=0.6  Score=44.47  Aligned_cols=73  Identities=14%  Similarity=0.126  Sum_probs=34.0

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEc--cCcCcCCH--HHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCE
Q 015894          245 VPPSKVAYVSKQLYDMGCSEISLG--DTIGVGTP--GTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGIST  320 (398)
Q Consensus       245 ~~~~~l~~~a~~l~~~Gad~I~L~--DT~G~~~P--~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~  320 (398)
                      .+.+...++++.+.++|++.|-+.  .+ +-..|  ....++++.+++. +++++..|.-|     ......|+++|++.
T Consensus        23 ~~~e~k~~i~~~L~~~Gv~~IE~g~~~~-~~~~p~~~~~~e~~~~i~~~-~~~~v~~l~~n-----~~~i~~a~~~G~~~   95 (295)
T 1ydn_A           23 VPTADKIALINRLSDCGYARIEATSFVS-PKWVPQLADSREVMAGIRRA-DGVRYSVLVPN-----MKGYEAAAAAHADE   95 (295)
T ss_dssp             CCHHHHHHHHHHHTTTTCSEEEEEECSC-TTTCGGGTTHHHHHHHSCCC-SSSEEEEECSS-----HHHHHHHHHTTCSE
T ss_pred             cCHHHHHHHHHHHHHcCcCEEEEccCcC-ccccccccCHHHHHHHHHhC-CCCEEEEEeCC-----HHHHHHHHHCCCCE
Confidence            345555566666666666554442  11 11112  1233444444332 44555555522     23444555666665


Q ss_pred             Eeec
Q 015894          321 VDSS  324 (398)
Q Consensus       321 VD~S  324 (398)
                      |...
T Consensus        96 V~i~   99 (295)
T 1ydn_A           96 IAVF   99 (295)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5443

>3lgd_A Adenosine deaminase CECR1; TIM barrel, dimerization and receptor binding domains, glyco hydrolase, growth factor, secreted; HET: NAG; 2.00A {Homo sapiens} PDB: 3lgg_A*

Probab=91.37  E-value=2.2  Score=44.17  Aligned_cols=140  Identities=16%  Similarity=0.020  Sum_probs=85.2

Q ss_pred             HHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHh-CC--CcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 015894          179 EAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARE-LS--IPVRGYLSCVVGCPVEGMVPPSKVAYVSK  255 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~-~G--~~v~~~l~~~fg~~~~~r~~~~~l~~~a~  255 (398)
                      +.+.+-|+..+-+....++.+...+-+.+.++.++.+.+.++.+++ .|  +.++.-+++.      -..+++...+.++
T Consensus       207 ~d~a~dgV~Y~ElR~~f~p~~~~~g~~l~~~~vv~~v~~~~~~~~~~~~~fI~~rlI~~~~------R~~~~e~a~e~l~  280 (508)
T 3lgd_A          207 QEFYEDNVLYMEIRARLLPVYELSGEHHDEEWSVKTYQEVAQKFVETHPEFIGIKIIYSDH------RSKDVAVIAESIR  280 (508)
T ss_dssp             HHHHHTTEEEEEEEECCCCCBCTTSCBCCHHHHHHHHHHHHHHHHHHCTTCCEEEEEEEEE------TTSCHHHHHHHHH
T ss_pred             HHHHHcCceEEEEeecCchHhhccCCCCCHHHHHHHHHHHHHHHHHhcCCceEEEEEEEec------CCCCHHHHHHHHH
Confidence            4455678876666533333333333457899999999999988875 45  5565433321      1245666656555


Q ss_pred             HHHhC------CCCEEEEccCcCcC-CHHHHHHHHHHHHhhCCCCeEEEEeCCccchH---HHHHHHHHHhCCCEEeec
Q 015894          256 QLYDM------GCSEISLGDTIGVG-TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQA---LSNILASLQMGISTVDSS  324 (398)
Q Consensus       256 ~l~~~------Gad~I~L~DT~G~~-~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA---~ANalaAl~aGa~~VD~S  324 (398)
                      .+.++      ++-.|-|+..-... .|....+.+...+..-.++++.+|+-.+.+.+   ..|...|+..|+++|+=.
T Consensus       281 ~a~~~~~~~~~~VvG~DLaG~E~~g~p~~~f~~~f~~~~A~~~gl~~t~HAGE~~~~g~~~~~~i~~Al~Lga~RIgHG  359 (508)
T 3lgd_A          281 MAMGLRIKFPTVVAGFDLVGHEDTGHSLHDYKEALMIPAKDGVKLPYFFHAGETDWQGTSIDRNILDALMLNTTRIGHG  359 (508)
T ss_dssp             HHHHHHHHCTTTEEEEEEESCTTTSCCTGGGHHHHTHHHHTTCCCCBCCEECCSSCCSSTTTTHHHHHHHTTCSSEEEC
T ss_pred             HHHHHHhhCCCceEEeccCCCCCCCCCHHHHHHHHHHHHHHHcCCceeeecccccCCCCCcHHHHHHHHhcCCceeeee
Confidence            55443      34455664332122 35667777766433345678999998876544   457888888999987533

>1rvg_A Fructose-1,6-bisphosphate aldolase; class II aldolase, metal-depdendent aldolase, lyase; 2.00A {Thermus aquaticus} SCOP: c.1.10.2 PDB: 1rv8_A 2fjk_A*

Probab=91.36  E-value=0.83  Score=44.25  Aligned_cols=116  Identities=19%  Similarity=0.215  Sum_probs=81.8

Q ss_pred             HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEccC-cCcCCHHHHHHHHHHHHhhCCC
Q 015894          215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGDT-IGVGTPGTVIPMLEAVLDAVPV  292 (398)
Q Consensus       215 ~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~DT-~G~~~P~~v~~lv~~l~~~~p~  292 (398)
                      ++++.+.|++.|+-|- .+..         .+.+.+..+.+.+.+.+... |.+.-. ..++....+..++..+.+  ..
T Consensus         5 ~~~ll~~A~~~~yAV~-AfNv---------~n~e~~~Ail~AAee~~sPvIlq~s~g~~~y~g~~~~~~~v~~~a~--~~   72 (305)
T 1rvg_A            5 GLEILKKAREEGYGVG-AFNV---------NNMEFLQAVLEAAEEQRSPVILALSEGAMKYGGRALTLMAVELAKE--AR   72 (305)
T ss_dssp             HHHHHHHHHHHTCCEE-EEEC---------CSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHHHHHHHHHHHHHHHH--CS
T ss_pred             HHHHHHHHHHCCCEEE-EEee---------CCHHHHHHHHHHHHHhCCCEEEECChhHHhhCCHHHHHHHHHHHHh--CC
Confidence            4577888999999874 3331         36788999999999999875 444321 222334556677777766  55


Q ss_pred             CeEEEEeCCccchHHHHHHHHHHhCCC--EEeeccccCCCCCCCCCCCCCc-cHHHHHHHHHhC
Q 015894          293 DKLAVHFHDTYGQALSNILASLQMGIS--TVDSSVSGLGGCPYAKGASGNV-ATEDVVYMLNGL  353 (398)
Q Consensus       293 ~~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGecp~a~graGNa-~lE~vv~~L~~~  353 (398)
                      +|+.+|.  |.|.....+..|+++|.+  ++|+|-..+-+         |. -|.+++.+.+..
T Consensus        73 VPValHl--DHg~~~e~~~~ai~~GFtSVMiDgS~~p~eE---------Ni~~Tk~vv~~ah~~  125 (305)
T 1rvg_A           73 VPVAVHL--DHGSSYESVLRALRAGFTSVMIDKSHEDFET---------NVRETRRVVEAAHAV  125 (305)
T ss_dssp             SCEEEEE--EEECSHHHHHHHHHTTCSEEEECCTTSCHHH---------HHHHHHHHHHHHHHT
T ss_pred             CcEEEEC--CCCCCHHHHHHHHHcCCCeeeeCCCCCCHHH---------HHHHHHHHHHHHHHc
Confidence            6777765  566678999999999998  77999887766         65 566777777643

>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0

Probab=91.36  E-value=2.7  Score=41.45  Aligned_cols=133  Identities=19%  Similarity=0.121  Sum_probs=81.2

Q ss_pred             HHHHHcCCCEEEEeccC--------chH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-CC-cEEEEEeeeecCCC-CCCC
Q 015894          179 EAAVAAGAKEVAIFASA--------SES--FSKSNINCTIEDSLIRYRDVALAAREL-SI-PVRGYLSCVVGCPV-EGMV  245 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~~--------Sd~--~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~-~v~~~l~~~fg~~~-~~r~  245 (398)
                      ++|.++|.|.|.|-..-        |+.  ++...+|-|.+.-.+.+.++++.+|+. |. .|.+-++..-.... ....
T Consensus       168 ~~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR~rf~~evv~aVr~~vg~~~v~vRls~~~~~~g~~~~~  247 (361)
T 3gka_A          168 ENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWSAARVGVHLAPRGDAHTMGDSD  247 (361)
T ss_dssp             HHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHSHHHHHHHHHHHHHHCGGGEEEEECTTCCSSSCCCSC
T ss_pred             HHHHHcCCCEEEECCcCccHHHhccCcccccccCCCCCChhhcHHHHHHHHHHHHHHcCCCeEEEecccccccCCCCCCC
Confidence            45678999999986652        232  223345667777677777778777764 43 45544542100000 0112


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhC-CCEEe
Q 015894          246 PPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMG-ISTVD  322 (398)
Q Consensus       246 ~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aG-a~~VD  322 (398)
                      +.+...++++.+.++|++.|.+....  ..|    ++++.+++.++..-+..-.     .-...+..+++.| ||.|-
T Consensus       248 ~~~~~~~la~~l~~~Gvd~i~v~~~~--~~~----~~~~~ik~~~~iPvi~~Gg-----it~e~a~~~l~~G~aD~V~  314 (361)
T 3gka_A          248 PAATFGHVARELGRRRIAFLFARESF--GGD----AIGQQLKAAFGGPFIVNEN-----FTLDSAQAALDAGQADAVA  314 (361)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEECCC--STT----CCHHHHHHHHCSCEEEESS-----CCHHHHHHHHHTTSCSEEE
T ss_pred             cHHHHHHHHHHHHHcCCCEEEECCCC--CCH----HHHHHHHHHcCCCEEEeCC-----CCHHHHHHHHHcCCccEEE
Confidence            35678899999999999999886532  122    5677788776542233322     2356778888888 77653

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=91.31  E-value=0.83  Score=46.63  Aligned_cols=72  Identities=18%  Similarity=0.160  Sum_probs=54.9

Q ss_pred             HHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeecccc
Q 015894          250 VAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSG  327 (398)
Q Consensus       250 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~G  327 (398)
                      ..+.++.+.++|++.|.+.=+.|  .|....+.++.+++.+|+.++.+-    .++...-+..+.++|++.|.++..|
T Consensus       238 ~~~~a~~l~~aGvd~v~i~~~~G--~~~~~~e~i~~i~~~~p~~pvi~g----~~~t~e~a~~l~~~G~d~I~v~~~~  309 (494)
T 1vrd_A          238 TMERVEKLVKAGVDVIVIDTAHG--HSRRVIETLEMIKADYPDLPVVAG----NVATPEGTEALIKAGADAVKVGVGP  309 (494)
T ss_dssp             HHHHHHHHHHTTCSEEEECCSCC--SSHHHHHHHHHHHHHCTTSCEEEE----EECSHHHHHHHHHTTCSEEEECSSC
T ss_pred             HHHHHHHHHHhCCCEEEEEecCC--chHHHHHHHHHHHHHCCCceEEeC----CcCCHHHHHHHHHcCCCEEEEcCCC
Confidence            34567888999999999843334  677888999999999987777663    2444556688889999999996543

>3oa3_A Aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, pathogenic fungus; 1.60A {Coccidioides immitis}

Probab=91.25  E-value=2.8  Score=40.20  Aligned_cols=140  Identities=18%  Similarity=0.137  Sum_probs=87.8

Q ss_pred             HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894          178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL  257 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l  257 (398)
                      ++.|.+.|+.-|.+.    +.+.            .   .+.+..+..++.|    +.+.|.|. +..+.+--..-++.+
T Consensus        80 c~eA~~~g~aaVCV~----P~~V------------~---~a~~~L~~s~V~V----~tVigFP~-G~~~~~~Kv~Ea~~A  135 (288)
T 3oa3_A           80 CAEAKEYGFATVCVR----PDYV------------S---RAVQYLQGTQVGV----TCVIGFHE-GTYSTDQKVSEAKRA  135 (288)
T ss_dssp             HHHHHHHTCSEEEEC----GGGH------------H---HHHHHTTTSSCEE----EEEESTTT-SCSCHHHHHHHHHHH
T ss_pred             HHHHHhcCCcEEEEC----HHHH------------H---HHHHHcCCCCCeE----EEEeCCCC-CCCcHHHHHHHHHHH
Confidence            356677899988885    2221            1   1122223334444    33455675 344455445557788


Q ss_pred             HhCCCCEEEEccCcCc---CCHHHHHHHHHHHHhhCCC--C--eEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCC
Q 015894          258 YDMGCSEISLGDTIGV---GTPGTVIPMLEAVLDAVPV--D--KLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGG  330 (398)
Q Consensus       258 ~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p~--~--~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGe  330 (398)
                      .+.|||.|-+.=-.|.   ..-..+.+-|..+++..+.  +  .|+.-..++-.... .+..|+++|||+|=+| .|++ 
T Consensus       136 i~~GAdEIDmVINig~lk~g~~~~v~~eI~~V~~a~~~~~lKVIlEt~~Lt~eei~~-A~~ia~eaGADfVKTS-TGf~-  212 (288)
T 3oa3_A          136 MQNGASELDMVMNYPWLSEKRYTDVFQDIRAVRLAAKDAILKVILETSQLTADEIIA-GCVLSSLAGADYVKTS-TGFN-  212 (288)
T ss_dssp             HHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHHH-HHHHHHHTTCSEEECC-CSSS-
T ss_pred             HHcCCCEEEEEeehhhhcCCcHHHHHHHHHHHHHHhcCCCceEEEECCCCCHHHHHH-HHHHHHHcCCCEEEcC-CCCC-
Confidence            8899999987766776   4557788888888887542  1  23333445544443 4677889999999999 6664 


Q ss_pred             CCCCCCCCCCccHHHHHHHHH
Q 015894          331 CPYAKGASGNVATEDVVYMLN  351 (398)
Q Consensus       331 cp~a~graGNa~lE~vv~~L~  351 (398)
                             +|++..|++..+.+
T Consensus       213 -------~~GAT~edv~lmr~  226 (288)
T 3oa3_A          213 -------GPGASIENVSLMSA  226 (288)
T ss_dssp             -------SCCCCHHHHHHHHH
T ss_pred             -------CCCCCHHHHHHHHH
Confidence                   35677777665543

>3fs2_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, bruciellla melitensis, DAHP synthetase I, cytoplasm, lipopolysaccharide biosynthesis; HET: PG4; 1.85A {Brucella melitensis}

Probab=91.24  E-value=4.8  Score=38.78  Aligned_cols=179  Identities=13%  Similarity=0.105  Sum_probs=104.7

Q ss_pred             CHHHHHHHHHHHHhc----CCCEEEEecCCC-CCcccC-CC--CHHHHHHHHHhc---cCCcEEEEeCCHhhHHHHHHcC
Q 015894          117 PAVVKVELIKLLVSS----GLAVVEATSFVS-PKWVPQ-LA--DAKDVMAAIQNV---EGARFPVLTPNLKGFEAAVAAG  185 (398)
Q Consensus       117 ~~~~k~~ia~~L~~a----Gv~~IEvG~~~~-~~~~p~-~~--D~~~v~~~i~~~---~~~~l~~l~~n~~~ie~a~~~G  185 (398)
                      +.++.+++++.|.++    |+..+=-++|-- |+--|. +.  ..++=++.+++.   .+..+..=..+...++.+.+. 
T Consensus        53 s~e~~~~~A~~lk~~~~~~~~~~v~k~~f~KapRTs~~sf~Glg~~~GL~~L~~~~~e~GLpv~Tev~D~~~v~~l~~~-  131 (298)
T 3fs2_A           53 TRDHAFEMAGRLKEMTDKLGIGLVYKSSFDKANRTSLKAARGIGLEKALEVFSDLKKEYGFPVLTDIHTEEQCAAVAPV-  131 (298)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCEEEECBCCCCC---------CCHHHHHHHHHHHHHHHCCCEEEECCSHHHHHHHTTT-
T ss_pred             CHHHHHHHHHHHHHHHHHcCCcEEEEcccccCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHhh-
Confidence            788889999999876    466555444431 222120 10  112233334322   244443333467778877777 


Q ss_pred             CCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC-CCHHHHHHHHHHHHhCCCCE
Q 015894          186 AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGM-VPPSKVAYVSKQLYDMGCSE  264 (398)
Q Consensus       186 v~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r-~~~~~l~~~a~~l~~~Gad~  264 (398)
                      +|.+.|-..  +        +..-       +.++++.+.|.+|-  +.       .+. .+++++...++.+.+.|.+.
T Consensus       132 vd~lkIgA~--~--------~~n~-------~LLr~va~~gkPVi--lK-------~Gms~t~~ei~~ave~i~~~Gn~~  185 (298)
T 3fs2_A          132 VDVLQIPAF--L--------CRQT-------DLLIAAARTGRVVN--VK-------KGQFLAPWDMKNVLAKITESGNPN  185 (298)
T ss_dssp             CSEEEECGG--G--------TTCH-------HHHHHHHHTTSEEE--EE-------CCTTCCGGGHHHHHHHHHTTTCCC
T ss_pred             CCEEEECcc--c--------cCCH-------HHHHHHHccCCcEE--Ee-------CCCCCCHHHHHHHHHHHHHcCCCe
Confidence            898888532  1        1111       13444556788875  33       122 47888889999999999988


Q ss_pred             EEEccCcCcCC-HH---HHHHHHHHHHhhCCCCeEEE-EeCC-------------ccchHHHHHHHHHHhCCC--EEeec
Q 015894          265 ISLGDTIGVGT-PG---TVIPMLEAVLDAVPVDKLAV-HFHD-------------TYGQALSNILASLQMGIS--TVDSS  324 (398)
Q Consensus       265 I~L~DT~G~~~-P~---~v~~lv~~l~~~~p~~~l~~-H~Hn-------------d~GlA~ANalaAl~aGa~--~VD~S  324 (398)
                      |.|+.-.-... +.   +++. +..+++ + ..||.+ ..|-             +..+...-++||+.+||+  +|+.=
T Consensus       186 iiL~erg~~y~~~~~~vdl~~-i~~lk~-~-~~PV~~D~sHsvq~p~~~~~~s~G~r~~v~~~a~AAvAlGAdGl~IE~H  262 (298)
T 3fs2_A          186 VLATERGVSFGYNTLVSDMRA-LPIMAG-L-GAPVIFDATHSVQQPGGQGGSTGGQREFVETLARAAVAVGVAGFFIETH  262 (298)
T ss_dssp             EEEEECCEECSSSCEECCTTH-HHHHHT-T-TSCEEEEHHHHTCCCC--------CGGGHHHHHHHHHHHCCSEEEEEEE
T ss_pred             EEEEECCCCCCCCCCccCHHH-HHHHHH-c-CCcEEEcCCCccccCCcccCCCCCchhhHHHHHHHHHHcCCCEEEEEec
Confidence            88876432211 11   2333 455676 6 568888 6664             233447889999999999  77554


Q ss_pred             c
Q 015894          325 V  325 (398)
Q Consensus       325 v  325 (398)
                      .
T Consensus       263 ~  263 (298)
T 3fs2_A          263 E  263 (298)
T ss_dssp             S
T ss_pred             C
Confidence            3

>1m5w_A Pyridoxal phosphate biosynthetic protein PDXJ; TIM barrel, protein-substrate complex, multi-binding states; HET: DXP; 1.96A {Escherichia coli} SCOP: c.1.24.1 PDB: 1ho1_A 1ho4_A* 1ixn_A* 1ixo_A* 1ixp_A 1ixq_A 3f4n_A*

Probab=91.20  E-value=0.6  Score=43.68  Aligned_cols=118  Identities=18%  Similarity=0.286  Sum_probs=73.3

Q ss_pred             HHHHHHHHHhc--cCCcEEEEe-CCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcE
Q 015894          153 AKDVMAAIQNV--EGARFPVLT-PNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPV  229 (398)
Q Consensus       153 ~~~v~~~i~~~--~~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v  229 (398)
                      .+.+...++++  .+++++.++ +..+.++.|.++|++.|-++.+   .+....-....+..|+++.+++++|+++|+.|
T Consensus       113 ~~~l~~~i~~L~~~GIrVSLFIDpd~~qi~aA~~~GA~~IELhTG---~Ya~a~~~~~~~~el~~i~~aa~~A~~lGL~V  189 (243)
T 1m5w_A          113 RDKMRDACKRLADAGIQVSLFIDADEEQIKAAAEVGAPFIEIHTG---CYADAKTDAEQAQELARIAKAATFAASLGLKV  189 (243)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHTTCSEEEEECH---HHHHCCSHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEech---hhhcCCCchhHHHHHHHHHHHHHHHHHcCCEE
Confidence            34444455543  367777776 6788999999999999999865   23222111124567899999999999999998


Q ss_pred             EEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE-----ccCcCcCCHHHHHHHHHHH
Q 015894          230 RGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL-----GDTIGVGTPGTVIPMLEAV  286 (398)
Q Consensus       230 ~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L-----~DT~G~~~P~~v~~lv~~l  286 (398)
                      .+      |   ++ .+.+.+..+++   =-+...++|     ++..=++.+..|+++.+.+
T Consensus       190 nA------G---Hg-L~y~Nv~~ia~---ip~i~ElnIGHaiia~Al~~Gl~~aV~~m~~~~  238 (243)
T 1m5w_A          190 NA------G---HG-LTYHNVKAIAA---IPEMHELNIGHAIIGRAVMTGLKDAVAEMKRLM  238 (243)
T ss_dssp             EE------E---SS-CCTTTHHHHHT---CTTEEEEEECHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             ec------C---CC-CCHHHHHHHhh---CCCCeEEccCHHHHHHHHHHhHHHHHHHHHHHH
Confidence            73      1   22 33344444421   124556655     3444455566666665555

>1q7z_A 5-methyltetrahydrofolate S-homocysteine methyltransferase; methionine, cobalamin, vitamin B12; 1.70A {Thermotoga maritima} SCOP: c.1.21.2 c.1.26.1 PDB: 1q7q_A 1q7m_A 1q85_A 1q8a_A 1q8j_A* 3bof_A 3bol_A

Probab=91.19  E-value=9  Score=40.00  Aligned_cols=218  Identities=14%  Similarity=0.130  Sum_probs=119.2

Q ss_pred             CCHHHHHH----HHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-cCCcEEE-Ee-C-C---Hh--hH----
Q 015894          116 VPAVVKVE----LIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-EGARFPV-LT-P-N---LK--GF----  178 (398)
Q Consensus       116 ~~~~~k~~----ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~~~~l~~-l~-~-n---~~--~i----  178 (398)
                      .+.++-.+    .++.|.+.|+|.+=+-.+.+      ..+.+..+..+++. ++..+.+ ++ . +   ..  .+    
T Consensus       119 ~~~~e~~~~~~~qi~~l~~~gvD~l~~ET~~~------~~Ea~aa~~a~~~~~~~~Pv~vS~t~~~~g~~~~G~~~~~~~  192 (566)
T 1q7z_A          119 TLFEEFYENFRETVEIMVEEGVDGIIFETFSD------ILELKAAVLAAREVSRDVFLIAHMTFDEKGRSLTGTDPANFA  192 (566)
T ss_dssp             BCHHHHHHHHHHHHHHHHHTTCSEEEEEEECC------HHHHHHHHHHHHHHCSSSCEEEEECCCTTSCCTTSCCHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCCEEEEeccCC------HHHHHHHHHHHHHhCCCCcEEEEEEEcCCCeeCCCCcHHHHH
Confidence            45555433    56778899999876643211      12333444455542 4443322 22 1 1   11  23    


Q ss_pred             HHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecCC---CC---CCCCHHHHH
Q 015894          179 EAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAREL-SIPVRGYLSCVVGCP---VE---GMVPPSKVA  251 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~~v~~~l~~~fg~~---~~---~r~~~~~l~  251 (398)
                      ......|++.|.+=++..+           +.    +..+++..++. ...+.+|=.  -|.|   +.   ...+|+++.
T Consensus       193 ~~l~~~~~~avG~NC~~gp-----------~~----~~~~l~~l~~~~~~p~~vyPN--aG~p~~~~~~~~~~~~p~~~a  255 (566)
T 1q7z_A          193 ITFDELDIDALGINCSLGP-----------EE----ILPIFQELSQYTDKFLVVEPN--AGKPIVENGKTVYPLKPHDFA  255 (566)
T ss_dssp             HHHHTSSCSEEEEESSSCH-----------HH----HHHHHHHHHHTCCSEEEEECC--SSSCEEETTEEECCCCHHHHH
T ss_pred             HHhhccCCCEEEEeCCCCH-----------HH----HHHHHHHHHhcCCCEEEEEcC--CCCCcccCCccccCCCHHHHH
Confidence            3334478887777555433           22    22334444333 555544332  2333   11   124689999


Q ss_pred             HHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCC----Ce--E----------------EEEe----------
Q 015894          252 YVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPV----DK--L----------------AVHF----------  299 (398)
Q Consensus       252 ~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~----~~--l----------------~~H~----------  299 (398)
                      +.++.+.+.|+..|.=|=   ..+|++++.+-+.++..-|.    .+  .                +--.          
T Consensus       256 ~~~~~~~~~G~~iiGGCC---GTtP~hI~aia~~~~~~~p~~~~~~~~~~~~s~~~~~~~~~~~iiGer~N~Tg~dsf~~  332 (566)
T 1q7z_A          256 VHIDSYYELGVNIFGGCC---GTTPEHVKLFRKVLGNRKPLQRKKKRIFAVSSPSKLVTFDHFVVIGERINPAGRKKLWA  332 (566)
T ss_dssp             TTHHHHHHTTCSEECCCT---TCCHHHHHHHHHHHCSCCCCCCCCCCCCEEECSSCEEESSSCEEEEEEECCTTCHHHHH
T ss_pred             HHHHHHHHcCCcEEcccc---CCCHHHHHHHHHHhcCCCCCCcccCccceecCCceeeccccceEEEEEecCCCChhHHH
Confidence            999999999988774221   24899999998888653321    11  1                1111          


Q ss_pred             ---CCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHh-CCCCCccChHHHHH
Q 015894          300 ---HDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNG-LGVRTNVDIRKLMI  366 (398)
Q Consensus       300 ---Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~-~Gi~t~iDl~~L~~  366 (398)
                         |++..-++.-+..-++.||++||... |...      ...--.++.++-.+.. .++..-||..+-.-
T Consensus       333 ~~~~~~~~~a~~~A~~~v~~GAdiIDIgp-g~~~------v~~~ee~~rvv~~i~~~~~vpisIDT~~~~v  396 (566)
T 1q7z_A          333 EMQKGNEEIVIKEAKTQVEKGAEVLDVNF-GIES------QIDVRYVEKIVQTLPYVSNVPLSLDIQNVDL  396 (566)
T ss_dssp             HHHTTCCHHHHHHHHHHHHTTCSEEEEEC-SSGG------GSCHHHHHHHHHHHHHHTCSCEEEECCCHHH
T ss_pred             HhhcCCHHHHHHHHHHHHHCCCCEEEECC-CCCC------CCHHHHHHHHHHHHHhhCCceEEEeCCCHHH
Confidence               23556788888899999999999983 2222      2333344445555543 35544566544333

>1f8m_A Isocitrate lyase, ICL; alpha-beta barrel, helix-swapping, closed conformation, bromopyuvate modification, structural genomics; 1.80A {Mycobacterium tuberculosis H37RV} SCOP: c.1.12.7 PDB: 1f61_A 1f8i_A

Probab=91.17  E-value=2  Score=43.42  Aligned_cols=198  Identities=14%  Similarity=0.067  Sum_probs=116.8

Q ss_pred             hHHHHHHcCCCEEEEeccCc-hH---HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC-------C--
Q 015894          177 GFEAAVAAGAKEVAIFASAS-ES---FSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE-------G--  243 (398)
Q Consensus       177 ~ie~a~~~Gv~~v~i~~~~S-d~---~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~-------~--  243 (398)
                      -++..+++|+-.|+|-+.+. +-   |..-+-=.+.++.+++++.+...+...|..+.+ +.- ....-.       .  
T Consensus       168 tvk~~i~AGaaGi~IEDq~~~~KkCGH~~gk~lvp~~e~v~rI~AAr~A~~~~g~d~vI-iAR-TDa~~a~li~s~~d~~  245 (429)
T 1f8m_A          168 LQKALIAAGVAGSHWEDQLASEKKCGHLGGKVLIPTQQHIRTLTSARLAADVADVPTVV-IAR-TDAEAATLITSDVDER  245 (429)
T ss_dssp             HHHHHHHTTCSEEEEECBCGGGCCCTTSSCCEECCHHHHHHHHHHHHHHHHHTTCCCEE-EEE-ECTTTCCEESCCCSTT
T ss_pred             HHHHHHHcCCEEEEEecCCCccccccCCCCCeeeCHHHHHHHHHHHHHHHHhcCCCEEE-EEE-echhhhcccccccccc
Confidence            46777899999999998873 21   111111146899999998777777667765321 111 100000       0  


Q ss_pred             -----------------CCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccc--
Q 015894          244 -----------------MVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYG--  304 (398)
Q Consensus       244 -----------------r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~G--  304 (398)
                                       ....+..++=++...+ |||.|.+.  .|.-+++++.++.+.++..+|...+.+=+--.+.  
T Consensus       246 d~~fl~g~~~~eg~y~~~~gld~AI~Ra~AYa~-gAD~if~e--~~~~~~eei~~f~~~v~~~~P~~~La~n~sPsf~w~  322 (429)
T 1f8m_A          246 DQPFITGERTREGFYRTKNGIEPCIARAKAYAP-FADLIWME--TGTPDLEAARQFSEAVKAEYPDQMLAYNCSPSFNWK  322 (429)
T ss_dssp             TGGGEEEEECTTSCEEECCSHHHHHHHHHHHGG-GCSEEEEC--CSSCCHHHHHHHHHHHHTTCTTCEEEEECCTTSCHH
T ss_pred             ccccccCCCCcccccccccCHHHHHHHHHHHHh-cCCEEEeC--CCCCCHHHHHHHHHHhcccCCCceeecCCCCCCCcc
Confidence                             1234555555555556 89999874  2346899999999999987886545432211111  


Q ss_pred             --hH---HHH-HHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCCC
Q 015894          305 --QA---LSN-ILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRT  378 (398)
Q Consensus       305 --lA---~AN-alaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~~  378 (398)
                        +.   +.+ .-..-++|+.++=.++.++        ++-+.++++++..+.+.|...   ...| +--+.-.+..|..
T Consensus       323 ~~~~~~~~~~f~~eL~~lG~~~v~~~l~~~--------raa~~a~~~~a~~~~~~G~~a---y~e~-Q~~e~~~~~~g~~  390 (429)
T 1f8m_A          323 KHLDDATIAKFQKELAAMGFKFQFITLAGF--------HALNYSMFDLAYGYAQNQMSA---YVEL-QEREFAAEERGYT  390 (429)
T ss_dssp             HHCCHHHHHHHHHHHHHHTEEEEEETTHHH--------HHHHHHHHHHHHHHHHHTHHH---HHHH-HHHHHHHGGGTCC
T ss_pred             cccchhhHhHHHHHHHHcCCeEEEECcHHH--------HHHHHHHHHHHHHHHHcCChH---HHHH-hHHHHhhhccCcc
Confidence              00   111 2233458999999999887        677888999988887755311   1111 1122223345666


Q ss_pred             CCCCccccccccc
Q 015894          379 SGSKTAIALSKTS  391 (398)
Q Consensus       379 ~~~~~pivG~~~f  391 (398)
                      .-.+.-.+|.+.|
T Consensus       391 ~~~hq~~~G~~~~  403 (429)
T 1f8m_A          391 ATKHQREVGAGYF  403 (429)
T ss_dssp             TTSHHHHTTHHHH
T ss_pred             hhhhhhhhccchH
Confidence            6666666665544

>4djd_D C/Fe-SP, corrinoid/iron-sulfur protein small subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_D* 4djf_D*

Probab=91.13  E-value=2.1  Score=41.70  Aligned_cols=142  Identities=15%  Similarity=0.165  Sum_probs=91.3

Q ss_pred             HHHHHHHHHH-hcCCCEEEEecC-CCCCcccCCCCHHHHHHHHHhc---cCCcEEEE-----eCCHhhHHHHHHcCCCEE
Q 015894          120 VKVELIKLLV-SSGLAVVEATSF-VSPKWVPQLADAKDVMAAIQNV---EGARFPVL-----TPNLKGFEAAVAAGAKEV  189 (398)
Q Consensus       120 ~k~~ia~~L~-~aGv~~IEvG~~-~~~~~~p~~~D~~~v~~~i~~~---~~~~l~~l-----~~n~~~ie~a~~~Gv~~v  189 (398)
                      ...++++.+. +.|.+.|++|.- ..|...+  .+.++..+.++.+   .++.++.-     +.+.+-+++++++|.+..
T Consensus        81 ~~~~~A~~~v~~~GAdiIDIg~eStrP~~~~--vs~ee~~~~V~~v~~~~~vPlsIDg~~~~T~~~eV~eaAleagag~~  158 (323)
T 4djd_D           81 EPGRWAQKCVAEYGADLIYLKLDGADPEGAN--HSVDQCVATVKEVLQAVGVPLVVVGCGDVEKDHEVLEAVAEAAAGEN  158 (323)
T ss_dssp             CHHHHHHHHHHTTCCSEEEEECGGGCTTTTC--CCHHHHHHHHHHHHHHCCSCEEEECCSCHHHHHHHHHHHHHHTTTSC
T ss_pred             hHHHHHHHHHHHcCCCEEEEcCccCCCCCCC--CCHHHHHHHHHHHHhhCCceEEEECCCCCCCCHHHHHHHHHhcCCCC
Confidence            3577888887 999999999854 3343222  2345555555533   46666666     444566789999887632


Q ss_pred             EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCC--CEEEE
Q 015894          190 AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGC--SEISL  267 (398)
Q Consensus       190 ~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Ga--d~I~L  267 (398)
                      .+..+++.               +++.++...|+++|..|.  ++.    +    .+.+.+.++.+.+.++|+  +.|.|
T Consensus       159 ~lINsv~~---------------~~~~~m~~laa~~g~~vV--lmh----~----~d~~~~~~l~~~a~~~GI~~e~IIl  213 (323)
T 4djd_D          159 LLLGNAEQ---------------ENYKSLTAACMVHKHNII--ARS----P----LDINICKQLNILINEMNLPLDHIVI  213 (323)
T ss_dssp             CEEEEEBT---------------TBCHHHHHHHHHHTCEEE--EEC----S----SCHHHHHHHHHHHHTTTCCGGGEEE
T ss_pred             CeEEECCc---------------ccHHHHHHHHHHhCCeEE--EEc----c----chHHHHHHHHHHHHHcCCCHHHEEE
Confidence            22223332               112355677788898775  231    2    246888888889999999  56776


Q ss_pred             ccCcC-c-CCHHHHHHHHHHHHh
Q 015894          268 GDTIG-V-GTPGTVIPMLEAVLD  288 (398)
Q Consensus       268 ~DT~G-~-~~P~~v~~lv~~l~~  288 (398)
                      ==.+| . -+.++..++++.++.
T Consensus       214 DPg~g~fgk~~e~~l~~l~~ir~  236 (323)
T 4djd_D          214 DPSIGGLGYGIEYSFSIMERIRL  236 (323)
T ss_dssp             ECCCCCTTTTHHHHHHHHHHHHH
T ss_pred             eCCCccccCCHHHHHHHHHHHHH
Confidence            44444 2 267888888988885

>3lye_A Oxaloacetate acetyl hydrolase; (alpha/beta)8 barrel; 1.30A {Cryphonectria parasitica} PDB: 3m0j_A* 3m0k_A

Probab=91.09  E-value=6.9  Score=37.80  Aligned_cols=150  Identities=14%  Similarity=0.084  Sum_probs=90.1

Q ss_pred             cCCcEEEEe-CCHhhHHHHHHcCCCEEEEe-ccCchH-HHhhh-cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecC
Q 015894          164 EGARFPVLT-PNLKGFEAAVAAGAKEVAIF-ASASES-FSKSN-INCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGC  239 (398)
Q Consensus       164 ~~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~-~~~Sd~-~~~~~-~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~  239 (398)
                      ++..+.++. .+.-....+.++|++.+.+. .+++-. +-..- .-.|.++.+..++.+.+.+ ...+.|.+.+      
T Consensus        23 ~~~~i~~~~a~D~~sA~l~e~aGf~ai~vsG~~~a~s~~G~pD~~~vt~~em~~~~~~i~r~~-~~~~PviaD~------   95 (307)
T 3lye_A           23 TDELIVCPGVYDGLSARTAMELGFKSLYMTGAGTTASRLGQPDLAIAQLHDMRDNADMIANLD-PFGPPLIADM------   95 (307)
T ss_dssp             CCCCEEEEEECSHHHHHHHHHTTCSCEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHTSS-TTSCCEEEEC------
T ss_pred             CCCeEEEecCcCHHHHHHHHHcCCCEEEeccHHHHHHhcCCCCCCCCCHHHHHHHHHhhhccC-CCCCcEEEEC------
Confidence            344455544 45555566677999998883 333322 11111 2347788877765544321 1135554322      


Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcC-----------cCCHHHHHHHHHHHHhhC----CCCeEEEEeCC---
Q 015894          240 PVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIG-----------VGTPGTVIPMLEAVLDAV----PVDKLAVHFHD---  301 (398)
Q Consensus       240 ~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G-----------~~~P~~v~~lv~~l~~~~----p~~~l~~H~Hn---  301 (398)
                      |.. -.+++.+.+.++.+.++|+..|.|-|..+           +....+..+.|++.++..    |+.-|-.-+-.   
T Consensus        96 d~G-yg~~~~v~~~v~~l~~aGaagv~iEDq~~~k~cgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~  174 (307)
T 3lye_A           96 DTG-YGGPIMVARTVEHYIRSGVAGAHLEDQILTKRCGHLSGKKVVSRDEYLVRIRAAVATKRRLRSDFVLIARTDALQS  174 (307)
T ss_dssp             TTC-SSSHHHHHHHHHHHHHTTCCEEEECCBCCCC--------CBCCHHHHHHHHHHHHHHHHHTTCCCEEEEEECCHHH
T ss_pred             CCC-CCCHHHHHHHHHHHHHcCCeEEEEcCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEEechhhhc
Confidence            222 23678888899999999999999999986           334455666666666432    34333333322   


Q ss_pred             -ccchHHHHHHHHHHhCCCEE
Q 015894          302 -TYGQALSNILASLQMGISTV  321 (398)
Q Consensus       302 -d~GlA~ANalaAl~aGa~~V  321 (398)
                       .+--|+.-+.+-.++|||.|
T Consensus       175 ~gldeAi~Ra~ay~eAGAD~i  195 (307)
T 3lye_A          175 LGYEECIERLRAARDEGADVG  195 (307)
T ss_dssp             HCHHHHHHHHHHHHHTTCSEE
T ss_pred             cCHHHHHHHHHHHHHCCCCEE
Confidence             23357888888899999966

>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032}

Probab=91.09  E-value=1.5  Score=41.35  Aligned_cols=145  Identities=18%  Similarity=0.141  Sum_probs=91.1

Q ss_pred             CcEEEEe-CCHhhHHHHHHcCCCEEEEec-cCchHHHhhh-cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC
Q 015894          166 ARFPVLT-PNLKGFEAAVAAGAKEVAIFA-SASESFSKSN-INCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE  242 (398)
Q Consensus       166 ~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~-~~Sd~~~~~~-~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~  242 (398)
                      -++.++. .+.-..+.+.++|++.|.+.. +++-.+-... ...|.++.+...+.+.+.+   ...|.+.+      |..
T Consensus        20 ~~i~~~~ayD~~sA~~~~~aG~dai~vg~~s~a~~~G~pD~~~vt~~em~~~~~~I~r~~---~~pviaD~------~~G   90 (255)
T 2qiw_A           20 KLLVLPTVWDTWSAGLVEEAGFSGLTIGSHPVADATGSSDGENMNFADYMAVVKKITSAV---SIPVSVDV------ESG   90 (255)
T ss_dssp             CCEECCEESSHHHHHHHHHTTCSCEEECHHHHHHHTTCCTTTCSCHHHHHHHHHHHHHHC---SSCEEEEC------TTC
T ss_pred             CcEEEecCcCHHHHHHHHHcCCCEEEEChHHHHHhCCCCCCCCcCHHHHHHHHHHHHhcC---CCCEEecc------CCC
Confidence            3444443 344445566679999998863 3442221111 2457888888887766654   35555333      332


Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCc-----CcCCHHHHHHHHHHHHhhCC--CCeEEEEeCCc------------c
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTI-----GVGTPGTVIPMLEAVLDAVP--VDKLAVHFHDT------------Y  303 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~-----G~~~P~~v~~lv~~l~~~~p--~~~l~~H~Hnd------------~  303 (398)
                      +-.++   .+.++++.+.|+..|.|-|..     .+..+.++.+.|+++++...  ++++-+-.|.|            .
T Consensus        91 yg~~~---~~~~~~l~~aGa~gv~iEd~~~~~~k~l~~~~e~~~~I~a~~~a~~~~g~~~~v~aRtd~~~~g~~~~~~~~  167 (255)
T 2qiw_A           91 YGLSP---ADLIAQILEAGAVGINVEDVVHSEGKRVREAQEHADYIAAARQAADVAGVDVVINGRTDAVKLGADVFEDPM  167 (255)
T ss_dssp             TTCCH---HHHHHHHHHTTCCEEEECSEEGGGTTEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECHHHHCTTTSSSHH
T ss_pred             cCcHH---HHHHHHHHHcCCcEEEECCCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCeEEEEEechhhccCCcchHHH
Confidence            22234   677788888999999999986     23455778888998887621  23444444444            3


Q ss_pred             chHHHHHHHHHHhCCCEEe
Q 015894          304 GQALSNILASLQMGISTVD  322 (398)
Q Consensus       304 GlA~ANalaAl~aGa~~VD  322 (398)
                      --++.-+.+-.+|||+.|=
T Consensus       168 ~~ai~ra~a~~eAGAd~i~  186 (255)
T 2qiw_A          168 VEAIKRIKLMEQAGARSVY  186 (255)
T ss_dssp             HHHHHHHHHHHHHTCSEEE
T ss_pred             HHHHHHHHHHHHcCCcEEE
Confidence            4577788888899999663

>1dos_A Aldolase class II; lyase, classii fructose 1,6-bisphosphate aldolase, glycolysis; 1.67A {Escherichia coli} SCOP: c.1.10.2 PDB: 1b57_A* 1gyn_A 1zen_A

Probab=91.01  E-value=12  Score=36.90  Aligned_cols=195  Identities=15%  Similarity=0.137  Sum_probs=115.3

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcc--cCCCC---HH-H------HHHHHH---hccCCcEEEEeC---C--
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWV--PQLAD---AK-D------VMAAIQ---NVEGARFPVLTP---N--  174 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~--p~~~D---~~-~------v~~~i~---~~~~~~l~~l~~---n--  174 (398)
                      ....+....++++-.+.+-+.|=-.+...-++.  ..+..   .+ .      +...++   +.-++.+....-   .  
T Consensus        36 v~n~e~~~Avl~AAee~~sPvIlq~s~g~~~~~~g~~~~~~~~~~~~i~ga~~~~~~v~~~A~~~~VPVaLHlDHg~~~~  115 (358)
T 1dos_A           36 CVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPVILHTDHCAKKL  115 (358)
T ss_dssp             CCSHHHHHHHHHHHHHHTCCEEEEECHHHHHHHHCTTSCCCSTTHHHHHHHHHHHHHHHHHHHHHTCEEEEEECCCCGGG
T ss_pred             eCCHHHHHHHHHHHHHhCCCEEEECChhHHHHhcCCCccccchhhhHHHhHHHHHHHHHHHHHHCCCCEEEECCCCCCcc
Confidence            567888888999999999997655432110010  00111   00 0      111222   112344444332   2  


Q ss_pred             HhhHHHHHHcC-----------CCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC-
Q 015894          175 LKGFEAAVAAG-----------AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE-  242 (398)
Q Consensus       175 ~~~ie~a~~~G-----------v~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~-  242 (398)
                      ++.++.++++|           ...|.+=  .|.        .+.+|+++..++++++|++.|+.|++.|-..-|.+|. 
T Consensus       116 ~~~i~~~i~a~~~~~~~~~~~gFtSVMiD--gS~--------~p~eENI~~Tkevv~~ah~~gvsVEaELG~vGG~EDgv  185 (358)
T 1dos_A          116 LPWIDGLLDAGEKHFAATGKPLFSSHMID--LSE--------ESLQENIEICSKYLERMSKIGMTLEIELGCTGGEEDGV  185 (358)
T ss_dssp             HHHHHHHHHHHHHHHHHHSSCSCSEEEEC--CTT--------SCHHHHHHHHHHHHHHHHHTTCEEEEECCCCCCCCCCC
T ss_pred             HHHHHHHHHHHHHHHHhcccCCCceEeec--CCC--------CCHHHHHHHHHHHHHHHHHcCCEEEEEeccccCcCCCc
Confidence            24466665543           6776652  222        3678999999999999999999999888876554542 


Q ss_pred             ---------CCCCHHHHHHHHHHHHhCCCC-EEEEccCcCc-----------CCHHHHHHHHHHHHhhC--C--CCeEEE
Q 015894          243 ---------GMVPPSKVAYVSKQLYDMGCS-EISLGDTIGV-----------GTPGTVIPMLEAVLDAV--P--VDKLAV  297 (398)
Q Consensus       243 ---------~r~~~~~l~~~a~~l~~~Gad-~I~L~DT~G~-----------~~P~~v~~lv~~l~~~~--p--~~~l~~  297 (398)
                               -.++|+...++++++-  |+| ...|+=++|.           +.|..+.++=+.+++.+  |  .+||.+
T Consensus       186 ~~~~~~~~~~yT~Peea~~fv~~tt--gvd~~d~LAvaiGt~HG~Yk~g~p~L~~~~L~~i~~~i~~~~g~~~~~vpLVl  263 (358)
T 1dos_A          186 DNSHMDASALYTQPEDVDYAYTELS--KISPRFTIAASFGNVHGVYKAGNVVLTPTILRDSQEYVSKKHNLPHNSLNFVF  263 (358)
T ss_dssp             SCCCCCCCCCSCCHHHHHHHHHHHH--TTCSCEEEECCSSCCCSSCCCSCCCCCTHHHHHHHHHHHHHHTCCTTCSCEEE
T ss_pred             cccccccccccCCHHHHHHHHHHhc--CCChhceEEEecccccCccCCCCCCcCHHHHHHHHHHHHHHhCCCCCCCcEEE
Confidence                     1388999888887542  444 2233333332           23444444444444332  3  257887


Q ss_pred             EeCCccchHHHHHHHHHHhCCCEEee
Q 015894          298 HFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       298 H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      |+=  -|........|+..|+.-|+.
T Consensus       264 HGg--SG~~~e~i~~ai~~GV~KiNi  287 (358)
T 1dos_A          264 HGG--SGSTAQEIKDSVSYGVVKMNI  287 (358)
T ss_dssp             CSC--TTCCHHHHHHHHHTTEEEEEE
T ss_pred             eCC--CCCCHHHHHHHHHCCCeEEEE
Confidence            774  488888899999999876543

>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}

Probab=90.97  E-value=5.9  Score=38.48  Aligned_cols=147  Identities=14%  Similarity=0.046  Sum_probs=93.8

Q ss_pred             CcEEEEe-CCHhhHHHHHHcCCCEEEEec-cCc-hHHHhhh-cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCC
Q 015894          166 ARFPVLT-PNLKGFEAAVAAGAKEVAIFA-SAS-ESFSKSN-INCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPV  241 (398)
Q Consensus       166 ~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~-~~S-d~~~~~~-~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~  241 (398)
                      -.+.++. .+.-..+.+.++|++.|.+.. +++ -.+-..- .-.|.++.+..++.+.+.++  .+.|.+.+      |.
T Consensus        39 ~~i~~~~ayD~~sA~i~e~aGfdai~vs~~~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~~--~~PviaD~------d~  110 (318)
T 1zlp_A           39 GSVLMPGVQDALSAAVVEKTGFHAAFVSGYSVSAAMLGLPDFGLLTTTEVVEATRRITAAAP--NLCVVVDG------DT  110 (318)
T ss_dssp             SSEEEEEECSHHHHHHHHHTTCSEEEECHHHHHHHHHCCCSSSCSCHHHHHHHHHHHHHHSS--SSEEEEEC------TT
T ss_pred             CcEEEecCCCHHHHHHHHHcCCCEEEECcHHHhhHhcCCCCCCCCCHHHHHHHHHHHHhhcc--CCCEEEeC------CC
Confidence            3455554 355455666779999998865 233 1111111 23578888888877766543  45554322      33


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCEEEEccCcC-----------cCCHHHHHHHHHHHHhhC--CCCeEEEEeCCcc----c
Q 015894          242 EGMVPPSKVAYVSKQLYDMGCSEISLGDTIG-----------VGTPGTVIPMLEAVLDAV--PVDKLAVHFHDTY----G  304 (398)
Q Consensus       242 ~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G-----------~~~P~~v~~lv~~l~~~~--p~~~l~~H~Hnd~----G  304 (398)
                      ..- +++.+.+.++++.++|+..|.|-|..+           +....+..+.|+++++..  ++..|---+-...    -
T Consensus       111 Gyg-~~~~v~~tv~~l~~aGaagv~iED~~~~k~cgH~~gk~L~p~~e~~~rI~Aa~~A~~~~~~~I~ARtda~a~~gl~  189 (318)
T 1zlp_A          111 GGG-GPLNVQRFIRELISAGAKGVFLEDQVWPKKCGHMRGKAVVPAEEHALKIAAAREAIGDSDFFLVARTDARAPHGLE  189 (318)
T ss_dssp             CSS-SHHHHHHHHHHHHHTTCCEEEEECBCSSCCCSSSSCCCBCCHHHHHHHHHHHHHHHTTSCCEEEEEECTHHHHHHH
T ss_pred             CCC-CHHHHHHHHHHHHHcCCcEEEECCCCCCccccCCCCCccCCHHHHHHHHHHHHHhcccCCcEEEEeeHHhhhcCHH
Confidence            322 788899999999999999999999974           333455667788887664  4433333332211    2


Q ss_pred             hHHHHHHHHHHhCCCEE
Q 015894          305 QALSNILASLQMGISTV  321 (398)
Q Consensus       305 lA~ANalaAl~aGa~~V  321 (398)
                      -++.-+.+-.+|||+.|
T Consensus       190 ~ai~Ra~Ay~eAGAd~i  206 (318)
T 1zlp_A          190 EGIRRANLYKEAGADAT  206 (318)
T ss_dssp             HHHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHHHcCCCEE
Confidence            47888889999999955

>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1

Probab=90.89  E-value=0.84  Score=45.45  Aligned_cols=68  Identities=12%  Similarity=0.207  Sum_probs=52.1

Q ss_pred             HHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEE-EeCCccchHHHHHHHHHHhCCCEEeecc
Q 015894          251 AYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAV-HFHDTYGQALSNILASLQMGISTVDSSV  325 (398)
Q Consensus       251 ~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~-H~Hnd~GlA~ANalaAl~aGa~~VD~Sv  325 (398)
                      .+.++.+.+.|++.|.| ++ +...|..+.++++.+++.+|+.+|.+ ..++     ..-+..+.++|++.|.++.
T Consensus       155 ~~~a~~~~~~G~d~i~i-~~-~~g~~~~~~e~i~~ir~~~~~~pviv~~v~~-----~~~a~~a~~~Gad~I~vg~  223 (404)
T 1eep_A          155 IERVEELVKAHVDILVI-DS-AHGHSTRIIELIKKIKTKYPNLDLIAGNIVT-----KEAALDLISVGADCLKVGI  223 (404)
T ss_dssp             HHHHHHHHHTTCSEEEE-CC-SCCSSHHHHHHHHHHHHHCTTCEEEEEEECS-----HHHHHHHHTTTCSEEEECS
T ss_pred             HHHHHHHHHCCCCEEEE-eC-CCCChHHHHHHHHHHHHHCCCCeEEEcCCCc-----HHHHHHHHhcCCCEEEECC
Confidence            44566788899999988 32 34578889999999999997778876 3332     4566788899999999953

>1o60_A 2-dehydro-3-deoxyphosphooctonate aldolase; structural genomics, transferase; 1.80A {Haemophilus influenzae} SCOP: c.1.10.4 PDB: 3e9a_A

Probab=90.84  E-value=12  Score=35.86  Aligned_cols=182  Identities=12%  Similarity=0.091  Sum_probs=105.0

Q ss_pred             CCHHHHHHHHHHHHhcC----CCEEEEecCCC-CCccc-CCC--CHHHHHHHHHhc---cCCcEEEEeCCHhhHHHHHHc
Q 015894          116 VPAVVKVELIKLLVSSG----LAVVEATSFVS-PKWVP-QLA--DAKDVMAAIQNV---EGARFPVLTPNLKGFEAAVAA  184 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aG----v~~IEvG~~~~-~~~~p-~~~--D~~~v~~~i~~~---~~~~l~~l~~n~~~ie~a~~~  184 (398)
                      =+.+.-+++++.|.++|    ...+=-.+|-- |+--| .+.  ..++-++.+++.   .++.+..=......++.+.+ 
T Consensus        29 ~~~e~a~~~a~~lk~~ga~~~~~~v~k~~f~k~prts~~sf~g~~l~~gl~~l~~~~~~~Glp~~te~~d~~~~~~l~~-  107 (292)
T 1o60_A           29 ESRDMAMQVCEAYVKVTEKLGVPYVFKASFDKANRSSIHSYRGPGMEEGLKIFQELKDTFGVKIITDVHEIYQCQPVAD-  107 (292)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTCCEEEEEESCCTTCSSTTSCCCSCHHHHHHHHHHHHHHHCCEEEEECCSGGGHHHHHT-
T ss_pred             cCHHHHHHHHHHHHHHhhhhCEeEEEhhhcccCCCCChHHhhhhhHHHHHHHHHHHHHHcCCcEEEecCCHHHHHHHHh-
Confidence            37888899999998876    33332223321 21111 111  223334444432   24443333346777877777 


Q ss_pred             CCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC-CCHHHHHHHHHHHHhCCCC
Q 015894          185 GAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGM-VPPSKVAYVSKQLYDMGCS  263 (398)
Q Consensus       185 Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r-~~~~~l~~~a~~l~~~Gad  263 (398)
                      .++.+.|-..  +        +..-       ++++++.+.|.+|.  +.       .+. .+++.+...++.+...|.+
T Consensus       108 ~vd~~kIgA~--~--------~~n~-------~Ll~~~a~~~kPV~--lk-------~G~~~t~~ei~~Av~~i~~~Gn~  161 (292)
T 1o60_A          108 VVDIIQLPAF--L--------ARQT-------DLVEAMAKTGAVIN--VK-------KPQFLSPSQMGNIVEKIEECGND  161 (292)
T ss_dssp             TCSEEEECGG--G--------TTCH-------HHHHHHHHTTCEEE--EE-------CCTTSCGGGHHHHHHHHHHTTCC
T ss_pred             cCCEEEECcc--c--------ccCH-------HHHHHHHcCCCcEE--Ee-------CCCCCCHHHHHHHHHHHHHcCCC
Confidence            7898888532  1        1111       13444456788875  33       122 3678888888888899987


Q ss_pred             EEEEccCcCcCC-H---HHHHHHHHHHHhhCCCCeEEE---Ee-----------CCccchHHHHHHHHHHhCCC--EEee
Q 015894          264 EISLGDTIGVGT-P---GTVIPMLEAVLDAVPVDKLAV---HF-----------HDTYGQALSNILASLQMGIS--TVDS  323 (398)
Q Consensus       264 ~I~L~DT~G~~~-P---~~v~~lv~~l~~~~p~~~l~~---H~-----------Hnd~GlA~ANalaAl~aGa~--~VD~  323 (398)
                      .+.|+--.+... +   ..+.. +..+++.++..||++   |.           -....+...-+.+|+.+||+  +|+.
T Consensus       162 ~i~L~~rg~~~~y~~~~~dl~~-i~~lk~~~~~~pV~~D~sH~~q~p~~~~~~~~g~~~~~~~ia~aAva~Ga~Gl~IE~  240 (292)
T 1o60_A          162 KIILCDRGTNFGYDNLIVDMLG-FSVMKKASKGSPVIFDVTHSLQCRDPFGAASSGRRAQVTELARSGLAVGIAGLFLEA  240 (292)
T ss_dssp             CEEEEECCEECSTTCEECCTTH-HHHHHHHTTSCCEEEEHHHHCC------------CTTHHHHHHHHHHHCCSEEEEEE
T ss_pred             eEEEEECCCCCCCCccccCHHH-HHHHHhhCCCCCEEEECCCcccccCccccCCCCChhHHHHHHHHHHHcCCCEEEEEe
Confidence            666665433221 1   13444 346788876678999   65           33334456777889999999  8876


Q ss_pred             cc
Q 015894          324 SV  325 (398)
Q Consensus       324 Sv  325 (398)
                      =+
T Consensus       241 H~  242 (292)
T 1o60_A          241 HP  242 (292)
T ss_dssp             ES
T ss_pred             cC
Confidence            65

>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*

Probab=90.82  E-value=4.4  Score=39.62  Aligned_cols=135  Identities=19%  Similarity=0.079  Sum_probs=84.3

Q ss_pred             HHHHHcCCCEEEEecc--------CchH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-C--CcEEEEEeeeecCCCCCCC
Q 015894          179 EAAVAAGAKEVAIFAS--------ASES--FSKSNINCTIEDSLIRYRDVALAAREL-S--IPVRGYLSCVVGCPVEGMV  245 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~--------~Sd~--~~~~~~~~s~~~~l~~~~~~v~~ak~~-G--~~v~~~l~~~fg~~~~~r~  245 (398)
                      ++|.++|.|.|-|-..        .|+.  +....+|-+.+.-.+.+.++++.+|+. |  +.|.+-++..- . ..+..
T Consensus       150 ~~a~~aGfDgVEih~ahGYLl~qFlsp~~N~R~D~yGGslenR~rf~~eiv~aVr~avg~d~pv~vRls~~~-~-~~~g~  227 (343)
T 3kru_A          150 KRANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSADD-Y-MEGGI  227 (343)
T ss_dssp             HHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCC-S-STTSC
T ss_pred             hhccccCCceEEEecccchhHHHhhcccccccchhhccchHhHHHHHHHHHHHHHhcCCccCCeEEEeechh-h-hccCc
Confidence            4567899999888531        2222  233455667787788888999998876 3  45665566321 1 11235


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEcc--CcCc---CCHHHHHHHHHHHHhhCCCCeEEEEeC-CccchHHHHHHHHHHhC-C
Q 015894          246 PPSKVAYVSKQLYDMGCSEISLGD--TIGV---GTPGTVIPMLEAVLDAVPVDKLAVHFH-DTYGQALSNILASLQMG-I  318 (398)
Q Consensus       246 ~~~~l~~~a~~l~~~Gad~I~L~D--T~G~---~~P~~v~~lv~~l~~~~p~~~l~~H~H-nd~GlA~ANalaAl~aG-a  318 (398)
                      +.+...++++.+.++ +|.|.+..  +...   ..|..-.++++.+++.++ +||..=+- ++    ...+..+++.| |
T Consensus       228 ~~~~~~~~a~~l~~~-vd~i~vs~g~~~~~~~~~~~~~~~~~~~~ir~~~~-iPVi~~Ggi~t----~e~Ae~~l~~G~a  301 (343)
T 3kru_A          228 NIDMMVEYINMIKDK-VDLIDVSSGGLLNVDINLYPGYQVKYAETIKKRCN-IKTSAVGLITT----QELAEEILSNERA  301 (343)
T ss_dssp             CHHHHHHHHHHHTTT-CSEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHT-CEEEEESSCCC----HHHHHHHHHTTSC
T ss_pred             cHHHHHHHHHHhhcc-ccEEeccCCceEeeeecccCceeehHHHHHHHhcC-cccceeeeeeH----HHHHHHHHhchhh
Confidence            788999999999999 99988841  1110   123334567778887765 34443221 22    35566778888 7


Q ss_pred             CEE
Q 015894          319 STV  321 (398)
Q Consensus       319 ~~V  321 (398)
                      |.|
T Consensus       302 D~V  304 (343)
T 3kru_A          302 DLV  304 (343)
T ss_dssp             SEE
T ss_pred             HHH
Confidence            755

>3eol_A Isocitrate lyase; seattle structural center for infectious disease, ssgcid; 2.00A {Brucella melitensis} PDB: 3oq8_A 3e5b_A 3p0x_A*

Probab=90.77  E-value=1.4  Score=44.61  Aligned_cols=199  Identities=14%  Similarity=0.035  Sum_probs=113.6

Q ss_pred             hHHHHHHcCCCEEEEeccCchH----HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEE-EEeeeecC------------
Q 015894          177 GFEAAVAAGAKEVAIFASASES----FSKSNINCTIEDSLIRYRDVALAARELSIPVRG-YLSCVVGC------------  239 (398)
Q Consensus       177 ~ie~a~~~Gv~~v~i~~~~Sd~----~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~-~l~~~fg~------------  239 (398)
                      -++...++|+-.|+|-+.+...    |...+-=.+.++..++++.+...+...|..+.+ .=+.+.+.            
T Consensus       165 tVk~~~~AGaAGi~IEDQ~~~~KkCGH~~gk~lvp~ee~v~rI~AAr~A~~~~g~d~vIiARTDA~~a~l~~s~~d~rd~  244 (433)
T 3eol_A          165 IMKAYIEAGAAGVHFEDQLASEKKCGHLGGKVLIPTAAHIRNLNAARLAADVMGTPTLIVARTDAEAAKLLTSDIDERDQ  244 (433)
T ss_dssp             HHHHHHHHTCSEEEEESBCC---------CCEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECTTTCCEESCCCSTTTG
T ss_pred             HHHHHHHcCCeEEEEecCCCCCCcCCCCCCCcccCHHHHHHHHHHHHHHHHhcCCCEEEEEEcCCccccccccCcccccc
Confidence            4677789999999999887521    111111237899999998777776666654321 01111000            


Q ss_pred             ----CCCC---------CCCHHHHHHHHHHHHhCCCCEEEE-ccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccch
Q 015894          240 ----PVEG---------MVPPSKVAYVSKQLYDMGCSEISL-GDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQ  305 (398)
Q Consensus       240 ----~~~~---------r~~~~~l~~~a~~l~~~Gad~I~L-~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~Gl  305 (398)
                          .+..         +...+..++=++...+ |||.|.+ +   |.-+++++..+.+.++..+|...+.+-+--.+..
T Consensus       245 ~fl~g~g~r~~eG~y~~~~gld~AI~Ra~AY~~-GAD~If~e~---~~~~~eei~~f~~~v~~~~P~~~L~~~~sPsfnw  320 (433)
T 3eol_A          245 PFVDYEAGRTAEGFYQVKNGIEPCIARAIAYAP-YCDLIWMET---SKPDLAQARRFAEAVHKAHPGKLLAYNCSPSFNW  320 (433)
T ss_dssp             GGBCSSSCBCTTCCEEBCCSHHHHHHHHHHHGG-GCSEEEECC---SSCCHHHHHHHHHHHHHHSTTCCEEEECCSSSCH
T ss_pred             cceeccCcccccccccccCCHHHHHHHHHHHHh-cCCEEEEeC---CCCCHHHHHHHHHHhcccCCCcccccCCCCCCcc
Confidence                0000         1235566665666666 9999987 3   3458999999999999888865565532222221


Q ss_pred             ----H---HHH-HHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCC
Q 015894          306 ----A---LSN-ILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGR  377 (398)
Q Consensus       306 ----A---~AN-alaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~  377 (398)
                          .   +.+ .-.--++|+.+|-.++.++        ++-+.++.++...+.+.|-...++   | +--++..+..|+
T Consensus       321 ~~~~~~~~~~~f~~eLa~lGv~~v~~~~a~~--------raa~~A~~~~a~~i~~~G~~ayve---~-Q~~e~~~~~~g~  388 (433)
T 3eol_A          321 KKNLDDATIAKFQRELGAMGYKFQFITLAGF--------HQLNYGMFELARGYKDRQMAAYSE---L-QQAEFAAEADGY  388 (433)
T ss_dssp             HHHSCHHHHHHHHHHHHHHTEEEEEETTHHH--------HHHHHHHHHHHHHHHHHTHHHHHH---H-HHHHHHHGGGTC
T ss_pred             cccCChhHHhHHHHHHHHcCCeEEEeCcHHH--------HHHHHHHHHHHHHHHHcCCHHHHH---H-HHHhhhhhccCc
Confidence                1   111 1223358999999988887        777888999988887655322222   1 112222345677


Q ss_pred             CCCCCccccccccc
Q 015894          378 TSGSKTAIALSKTS  391 (398)
Q Consensus       378 ~~~~~~pivG~~~f  391 (398)
                      ..-.+.--+|.+-|
T Consensus       389 ~~~~hq~~~g~~y~  402 (433)
T 3eol_A          389 TATKHQREVGTGYF  402 (433)
T ss_dssp             CCC--------CHH
T ss_pred             eeeecccccccchH
Confidence            66666656665543

>3gr7_A NADPH dehydrogenase; flavin, FMN, beta-alpha-barrel, oxidoreductase, flavoprotein; HET: FMN; 2.30A {Geobacillus kaustophilus} PDB: 3gr8_A*

Probab=90.77  E-value=3.6  Score=40.06  Aligned_cols=118  Identities=16%  Similarity=0.157  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHHHHhCCCcEEEEEeeeecC----------CCC------C----CCCH-------HHHHHHHHHHHhCCC
Q 015894          210 DSLIRYRDVALAARELSIPVRGYLSCVVGC----------PVE------G----MVPP-------SKVAYVSKQLYDMGC  262 (398)
Q Consensus       210 ~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~----------~~~------~----r~~~-------~~l~~~a~~l~~~Ga  262 (398)
                      +.++..+++++.+++.|-.+...|... |-          |-.      .    ..+.       +.+.+.++.+.++|.
T Consensus        80 ~~i~~~~~~~~~vh~~G~~i~~QL~H~-Gr~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~~aGf  158 (340)
T 3gr7_A           80 DHIAGLRELVGLVKEHGAAIGIQLAHA-GRKSQVPGEIIAPSAVPFDDSSPTPKEMTKADIEETVQAFQNGARRAKEAGF  158 (340)
T ss_dssp             THHHHHHHHHHHHHHTTCEEEEEEECC-GGGCCSSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHhCCCeEEEEeccC-CCccCCCCCccCCCCccccCCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence            556778888999999999888777653 10          000      0    1222       345556777778899


Q ss_pred             CEEEEc-------------------cCcCcCC---HHHHHHHHHHHHhhCCCCeEEEEeCC--------ccchHHHHHHH
Q 015894          263 SEISLG-------------------DTIGVGT---PGTVIPMLEAVLDAVPVDKLAVHFHD--------TYGQALSNILA  312 (398)
Q Consensus       263 d~I~L~-------------------DT~G~~~---P~~v~~lv~~l~~~~p~~~l~~H~Hn--------d~GlA~ANala  312 (398)
                      |.|-|-                   |-.|...   +.-+.++++++|+.+ +.+|.+-..-        +....+.-+..
T Consensus       159 DgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~avr~~v-~~pv~vRls~~~~~~~g~~~~~~~~la~~  237 (340)
T 3gr7_A          159 DVIEIHAAHGYLINEFLSPLSNRRQDEYGGSPENRYRFLGEVIDAVREVW-DGPLFVRISASDYHPDGLTAKDYVPYAKR  237 (340)
T ss_dssp             SEEEEEECTTCHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC-CSCEEEEEESCCCSTTSCCGGGHHHHHHH
T ss_pred             CEEEEccccchHHHHcCCCccCcCCCcccCCHHHHHHHHHHHHHHHHHhc-CCceEEEeccccccCCCCCHHHHHHHHHH
Confidence            987663                   4455432   344788999999988 5577776653        23445555555


Q ss_pred             HHHhCCCEEeeccccCC
Q 015894          313 SLQMGISTVDSSVSGLG  329 (398)
Q Consensus       313 Al~aGa~~VD~Sv~GlG  329 (398)
                      .-++|++.|+++..+..
T Consensus       238 L~~~Gvd~i~vs~g~~~  254 (340)
T 3gr7_A          238 MKEQGVDLVDVSSGAIV  254 (340)
T ss_dssp             HHHTTCCEEEEECCCSS
T ss_pred             HHHcCCCEEEEecCCcc
Confidence            56799999999875443

>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*

Probab=90.69  E-value=2.9  Score=41.33  Aligned_cols=120  Identities=10%  Similarity=0.116  Sum_probs=78.1

Q ss_pred             CCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecC---------------CCC---------------CCCCH--------
Q 015894          206 CTIEDSLIRYRDVALAARELSIPVRGYLSCVVGC---------------PVE---------------GMVPP--------  247 (398)
Q Consensus       206 ~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~---------------~~~---------------~r~~~--------  247 (398)
                      ...++.++..+.+++.+++.|-.+.+.|... |-               |-.               ....|        
T Consensus        84 i~~d~~i~~~k~l~~avh~~G~~i~~QL~H~-Gr~~~~~~~~~~~~~~apS~~~~~~~~~~~~~~~~~~~~p~~mt~~eI  162 (376)
T 1icp_A           84 IWTKEQVEAWKPIVDAVHAKGGIFFCQIWHV-GRVSNKDFQPNGEDPISCTDRGLTPQIMSNGIDIAHFTRPRRLTTDEI  162 (376)
T ss_dssp             CSSHHHHHHHHHHHHHHHHTTCEEEEEEECC-TTSSCTTTSGGGCCCEESSSCCCCCEECTTSSCEECCCCCEECCTTTH
T ss_pred             cCCHHHHHHHHHHHHHHHhcCCeEEEEeecC-CCCcCcccccCCCceecCCCCCCccccccccccccCCCCCCcCCHHHH
Confidence            3345667788888888999998887777652 10               000               00122        


Q ss_pred             ----HHHHHHHHHHHhCCCCEEEEc-------------------cCcCcCC---HHHHHHHHHHHHhhCCCCeEEEEeCC
Q 015894          248 ----SKVAYVSKQLYDMGCSEISLG-------------------DTIGVGT---PGTVIPMLEAVLDAVPVDKLAVHFHD  301 (398)
Q Consensus       248 ----~~l~~~a~~l~~~Gad~I~L~-------------------DT~G~~~---P~~v~~lv~~l~~~~p~~~l~~H~Hn  301 (398)
                          +.+.+.++.+.++|.|.|-|-                   |-.|...   +..+.++|+++|+.++..+|.+-++-
T Consensus       163 ~~~i~~f~~AA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~V~vrls~  242 (376)
T 1icp_A          163 PQIVNEFRVAARNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISP  242 (376)
T ss_dssp             HHHHHHHHHHHHHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECT
T ss_pred             HHHHHHHHHHHHHHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHhcCCceEEEecc
Confidence                567778888899999987762                   4455432   34578889999998863278877763


Q ss_pred             c-------cch----HHHHHHHHHHhCCCEEeeccc
Q 015894          302 T-------YGQ----ALSNILASLQMGISTVDSSVS  326 (398)
Q Consensus       302 d-------~Gl----A~ANalaAl~aGa~~VD~Sv~  326 (398)
                      +       .+.    ++.-+.+.-++|++.|+.+..
T Consensus       243 ~~~~~g~~~~~~~~~~~~la~~le~~Gvd~i~v~~~  278 (376)
T 1icp_A          243 FAHYNEAGDTNPTALGLYMVESLNKYDLAYCHVVEP  278 (376)
T ss_dssp             TCCTTTCCCSCHHHHHHHHHHHHGGGCCSEEEEECC
T ss_pred             ccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEcCC
Confidence            2       122    333344444789999999764

>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*

Probab=90.67  E-value=6.2  Score=38.01  Aligned_cols=154  Identities=16%  Similarity=0.151  Sum_probs=87.9

Q ss_pred             HHHHHHHHhcCC-CEEEEecCCCCCcccCCCCHHHH---HHHHHhccCCcEEE--Ee--CC-HhhHHHHHHcCCCEEEEe
Q 015894          122 VELIKLLVSSGL-AVVEATSFVSPKWVPQLADAKDV---MAAIQNVEGARFPV--LT--PN-LKGFEAAVAAGAKEVAIF  192 (398)
Q Consensus       122 ~~ia~~L~~aGv-~~IEvG~~~~~~~~p~~~D~~~v---~~~i~~~~~~~l~~--l~--~n-~~~ie~a~~~Gv~~v~i~  192 (398)
                      .+++....++|. ..|..++.          +++++   ++.+++..+..+.+  +.  +. .+.++.+.+.|++.|.+.
T Consensus        26 ~~la~av~~aG~lG~i~~~~~----------~~~~~~~~i~~i~~~~~~p~gvnl~~~~~~~~~~~~~a~~~g~d~V~~~   95 (332)
T 2z6i_A           26 GDLAGAVSKAGGLGIIGGGNA----------PKEVVKANIDKIKSLTDKPFGVNIMLLSPFVEDIVDLVIEEGVKVVTTG   95 (332)
T ss_dssp             HHHHHHHHHHTSBEEEECTTC----------CHHHHHHHHHHHHHHCCSCEEEEECTTSTTHHHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHHHHhCCCcEEeCCCCC----------CHHHHHHHHHHHHHhcCCCEEEEecCCCCCHHHHHHHHHHCCCCEEEEC
Confidence            457777888885 56654431          23333   33444333333332  33  22 245788899999999885


Q ss_pred             ccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcc--C
Q 015894          193 ASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGD--T  270 (398)
Q Consensus       193 ~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~D--T  270 (398)
                      ... +                  .++++.+|+.|+.+.+.+           .+++    .++.+.+.|+|.|.+-.  +
T Consensus        96 ~g~-p------------------~~~i~~l~~~g~~v~~~v-----------~~~~----~a~~~~~~GaD~i~v~g~~~  141 (332)
T 2z6i_A           96 AGN-P------------------SKYMERFHEAGIIVIPVV-----------PSVA----LAKRMEKIGADAVIAEGMEA  141 (332)
T ss_dssp             SSC-G------------------GGTHHHHHHTTCEEEEEE-----------SSHH----HHHHHHHTTCSCEEEECTTS
T ss_pred             CCC-h------------------HHHHHHHHHcCCeEEEEe-----------CCHH----HHHHHHHcCCCEEEEECCCC
Confidence            542 1                  123555667787765322           1333    35667789999988832  2


Q ss_pred             cCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchH-HHHHHHHHHhCCCEEeec
Q 015894          271 IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQA-LSNILASLQMGISTVDSS  324 (398)
Q Consensus       271 ~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA-~ANalaAl~aGa~~VD~S  324 (398)
                      -|...+.....++..+++.+. +|+-.=+    |.. ..++.+++.+||+.|...
T Consensus       142 GG~~g~~~~~~ll~~i~~~~~-iPViaaG----GI~~~~~~~~al~~GAdgV~vG  191 (332)
T 2z6i_A          142 GGHIGKLTTMTLVRQVATAIS-IPVIAAG----GIADGEGAAAGFMLGAEAVQVG  191 (332)
T ss_dssp             SEECCSSCHHHHHHHHHHHCS-SCEEEES----SCCSHHHHHHHHHTTCSEEEEC
T ss_pred             CCCCCCccHHHHHHHHHHhcC-CCEEEEC----CCCCHHHHHHHHHcCCCEEEec
Confidence            222111123367777777653 3454432    343 467778888999988765

>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*

Probab=90.65  E-value=4.5  Score=36.94  Aligned_cols=199  Identities=12%  Similarity=0.051  Sum_probs=99.9

Q ss_pred             HHHHHHHHhcCCCEEEEecCCCCCcc-cCCC--CHHHHHHHHHhccCCc---EEEEeC--------CH-----------h
Q 015894          122 VELIKLLVSSGLAVVEATSFVSPKWV-PQLA--DAKDVMAAIQNVEGAR---FPVLTP--------NL-----------K  176 (398)
Q Consensus       122 ~~ia~~L~~aGv~~IEvG~~~~~~~~-p~~~--D~~~v~~~i~~~~~~~---l~~l~~--------n~-----------~  176 (398)
                      .+.++.+.++|++.||+.......|. +.+.  +.+++.+.+++ .+.+   +++..+        +.           +
T Consensus        15 ~~~l~~~~~~G~~~iEl~~~~~~~~~~~~~~~~~~~~~~~~l~~-~gl~~~~~~~h~~~~~~~~~~~~~~r~~~~~~~~~   93 (287)
T 2x7v_A           15 DRVPQDTVNIGGNSFQIFPHNARSWSAKLPSDEAATKFKREMKK-HGIDWENAFCHSGYLINLASPKDDIWQKSVELLKK   93 (287)
T ss_dssp             GGHHHHHHHTTCSEEEECSCCCSSSCCCCCCHHHHHHHHHHHHH-HTCCGGGEEEECCTTCCTTCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCEEEEeCCCcccccccCCCHHHHHHHHHHHHH-cCCCcceeEEecccccccCCCCHHHHHHHHHHHHH
Confidence            34667778899999999532111121 1111  22333333332 2444   444321        11           1


Q ss_pred             hHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHh--CCCcEEEEEeeeecCCCCCCCCHHHHHHHH
Q 015894          177 GFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARE--LSIPVRGYLSCVVGCPVEGMVPPSKVAYVS  254 (398)
Q Consensus       177 ~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~--~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a  254 (398)
                      .++.|.+.|++.|.+.....       .+.+.++.++++.+.++.+-+  .|+.+.  +....+.+..--.+++.+.+++
T Consensus        94 ~i~~A~~lG~~~v~~~~g~~-------~~~~~~~~~~~~~~~l~~l~~~~~gv~l~--lEn~~~~~~~~~~~~~~~~~l~  164 (287)
T 2x7v_A           94 EVEICRKLGIRYLNIHPGSH-------LGTGEEEGIDRIVRGLNEVLNNTEGVVIL--LENVSQKGGNIGYKLEQLKKIR  164 (287)
T ss_dssp             HHHHHHHHTCCEEEECCEEC-------TTSCHHHHHHHHHHHHHHHHTTCCSCEEE--EECCCCCTTEECSSHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEEecCCC-------CCCCHHHHHHHHHHHHHHHHcccCCCEEE--EeCCCCCCCccCCCHHHHHHHH
Confidence            24566778999887753311       122566677776666655433  455433  3321110000013566666665


Q ss_pred             HHHHhCCC-CEEE-EccCc-----Cc--CCHHHHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894          255 KQLYDMGC-SEIS-LGDTI-----GV--GTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       255 ~~l~~~Ga-d~I~-L~DT~-----G~--~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S  324 (398)
                      +.   .+- +.+. .-||.     |.  ..|..+.++++.+.+.++ +-..++|+||..+--          |-. -   
T Consensus       165 ~~---~~~~~~vg~~~D~~h~~~~g~~~~~~~~~~~~l~~~~~~~g~~~i~~vH~~D~~~~~----------~~~-~---  227 (287)
T 2x7v_A          165 DL---VDQRDRVAITYDTCHGFDSGYDITKKEGVEALLNEIESLFGLERLKMIHLNDSKYPL----------GAA-K---  227 (287)
T ss_dssp             HH---CSCGGGEEEEEEHHHHHHTTCCTTSHHHHHHHHHHHHHHTCGGGEEEEEECEESSCT----------TCC-C---
T ss_pred             Hh---cCCCCCeEEEEEhhhHHHcCCCCCchHHHHHHHHHHHHhcCccceeEEEEecCCCcc----------CCc-c---
Confidence            43   342 3222 22542     21  224467777777766553 445788999876520          110 0   


Q ss_pred             cccCCCCCCCCCCCCCccHHHHHHHHHhC
Q 015894          325 VSGLGGCPYAKGASGNVATEDVVYMLNGL  353 (398)
Q Consensus       325 v~GlGecp~a~graGNa~lE~vv~~L~~~  353 (398)
                          .. -..+ +.|..+.+.++..|++.
T Consensus       228 ----~~-~~~~-G~G~id~~~~~~~L~~~  250 (287)
T 2x7v_A          228 ----DR-HERI-GSGFIGEEGFAVFFSFK  250 (287)
T ss_dssp             ----CC-EECT-TSSSSHHHHHHHHHTCH
T ss_pred             ----cc-cCCC-CCCCcCHHHHHHHHhcc
Confidence                00 0012 35789999999999853

>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0

Probab=90.65  E-value=1.6  Score=42.02  Aligned_cols=98  Identities=10%  Similarity=0.149  Sum_probs=79.0

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcCc---CCHHHHHHHHHHHHhhCCCCeEEEEe-CCccchHHHHHHHHHHhCC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGV---GTPGTVIPMLEAVLDAVPVDKLAVHF-HDTYGQALSNILASLQMGI  318 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p~~~l~~H~-Hnd~GlA~ANalaAl~aGa  318 (398)
                      +..|.+.+.++++.+.+.|++.|.++-|.|=   ++.++-.++++.+.+....++|-++. +|+..-++..+..|-++||
T Consensus        24 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Lt~~Er~~v~~~~v~~~grvpViaGvg~~~t~~ai~la~~A~~~Ga  103 (313)
T 3dz1_A           24 GKIDDVSIDRLTDFYAEVGCEGVTVLGILGEAPKLDAAEAEAVATRFIKRAKSMQVIVGVSAPGFAAMRRLARLSMDAGA  103 (313)
T ss_dssp             SCBCHHHHHHHHHHHHHTTCSEEEESTGGGTGGGSCHHHHHHHHHHHHHHCTTSEEEEECCCSSHHHHHHHHHHHHHHTC
T ss_pred             CCcCHHHHHHHHHHHHHCCCCEEEeCccCcChhhCCHHHHHHHHHHHHHHcCCCcEEEecCCCCHHHHHHHHHHHHHcCC
Confidence            5789999999999999999999999999995   77888888898888776556777776 7899999999999999999


Q ss_pred             CEEeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q 015894          319 STVDSSVSGLGGCPYAKGASGNVATEDVVYMLN  351 (398)
Q Consensus       319 ~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~  351 (398)
                      +.+=+ +     .||.  .   ++-|+++..++
T Consensus       104 davlv-~-----~P~~--~---~s~~~l~~~f~  125 (313)
T 3dz1_A          104 AGVMI-A-----PPPS--L---RTDEQITTYFR  125 (313)
T ss_dssp             SEEEE-C-----CCTT--C---CSHHHHHHHHH
T ss_pred             CEEEE-C-----CCCC--C---CCHHHHHHHHH
Confidence            98754 2     3441  1   34566666654

>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A

Probab=90.62  E-value=1.3  Score=42.17  Aligned_cols=82  Identities=11%  Similarity=0.050  Sum_probs=69.6

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcCc---CCHHHHHHHHHHHHhhC-CCCeEEEEe-CCccchHHHHHHHHHHhC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGV---GTPGTVIPMLEAVLDAV-PVDKLAVHF-HDTYGQALSNILASLQMG  317 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~-p~~~l~~H~-Hnd~GlA~ANalaAl~aG  317 (398)
                      +..|.+.+.++++.+.+.|++.|.++-|.|-   ++.++-.++++.+.+.. +.+++-+|. +|+..-++..+..|-++|
T Consensus        17 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~G   96 (291)
T 3tak_A           17 GGVDWKSLEKLVEWHIEQGTNSIVAVGTTGEASTLSMEEHTQVIKEIIRVANKRIPIIAGTGANSTREAIELTKAAKDLG   96 (291)
T ss_dssp             SCBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHHCCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCeEEEeCCCCCHHHHHHHHHHHHhcC
Confidence            5789999999999999999999999999995   67888888888888765 345677765 689999999999999999


Q ss_pred             CCEEeec
Q 015894          318 ISTVDSS  324 (398)
Q Consensus       318 a~~VD~S  324 (398)
                      |+.+=+.
T Consensus        97 adavlv~  103 (291)
T 3tak_A           97 ADAALLV  103 (291)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEc
Confidence            9977554

>2vp8_A Dihydropteroate synthase 2; RV1207 transferase, folate biosynthesis, antibiotic resistance; 2.64A {Mycobacterium tuberculosis}

Probab=90.60  E-value=0.9  Score=44.26  Aligned_cols=74  Identities=18%  Similarity=0.270  Sum_probs=51.0

Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEcc-Cc--C--cCCHHHHH---HHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhC
Q 015894          246 PPSKVAYVSKQLYDMGCSEISLGD-TI--G--VGTPGTVI---PMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMG  317 (398)
Q Consensus       246 ~~~~l~~~a~~l~~~Gad~I~L~D-T~--G--~~~P~~v~---~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aG  317 (398)
                      +.+..++.++++.+.|||.|-+.= +.  |  +-..+++.   .+|+.+++.+|+++|.+-   ++--  .-+.+|+++|
T Consensus        63 ~~~~a~~~A~~~v~~GAdIIDIGgeSTrPG~~v~~~eEl~Rv~pvI~~l~~~~~~vpISID---T~~~--~VaeaAl~aG  137 (318)
T 2vp8_A           63 SDAAARDAVHRAVADGADVIDVGGVKAGPGERVDVDTEITRLVPFIEWLRGAYPDQLISVD---TWRA--QVAKAACAAG  137 (318)
T ss_dssp             -CHHHHHHHHHHHHTTCSEEEEC----------CHHHHHHHHHHHHHHHHHHSTTCEEEEE---CSCH--HHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCCCHHHHHHHHHHHHHHHHhhCCCCeEEEe---CCCH--HHHHHHHHhC
Confidence            678888899999999999998872 21  2  22234444   447888888878889884   4433  4456889999


Q ss_pred             CCEEeec
Q 015894          318 ISTVDSS  324 (398)
Q Consensus       318 a~~VD~S  324 (398)
                      +++|+-.
T Consensus       138 a~iINDV  144 (318)
T 2vp8_A          138 ADLINDT  144 (318)
T ss_dssp             CCEEEET
T ss_pred             CCEEEEC
Confidence            9999643

>1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel, lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB: 1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A 3nq8_A 3q2d_A* 3nr0_A 3nqv_A

Probab=90.60  E-value=4.9  Score=37.91  Aligned_cols=135  Identities=12%  Similarity=0.056  Sum_probs=82.2

Q ss_pred             EeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcC---cCCHHHHHHHHHHHHhhCC--CCe----EEEEeCCcc
Q 015894          233 LSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIG---VGTPGTVIPMLEAVLDAVP--VDK----LAVHFHDTY  303 (398)
Q Consensus       233 l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~lv~~l~~~~p--~~~----l~~H~Hnd~  303 (398)
                      ++.+.|.|.. ..+.+.-..-++.+.+.||+.|-+.=-.|   ...-..+.+-+..+++..+  +.+    |+.-.=+|.
T Consensus        71 v~tVigFP~G-~~~~~~Kv~E~~~Av~~GAdEIDmVinig~l~~g~~~~v~~ei~~v~~a~~~~g~~lKvIlEt~~L~d~  149 (260)
T 1p1x_A           71 IATVTNFPHG-NDDIDIALAETRAAIAYGADEVDVVFPYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIETGELKDE  149 (260)
T ss_dssp             EEEEESTTTC-CSCHHHHHHHHHHHHHHTCSEEEEECCHHHHHTTCCHHHHHHHHHHHHHHHHTTCEEEEECCHHHHCSH
T ss_pred             EEEEeCCCCC-CCcHHHHHHHHHHHHHcCCCEEEEeccHHhhhCCCHHHHHHHHHHHHHHhcccCCeEEEEEecccCCcH
Confidence            3344556754 44555444557788889999998877777   4445777777888777542  122    333333444


Q ss_pred             chHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHh-----CCCCCc------cC-hHHHHHHHHHH
Q 015894          304 GQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNG-----LGVRTN------VD-IRKLMIAGDFI  371 (398)
Q Consensus       304 GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~-----~Gi~t~------iD-l~~L~~~~~~v  371 (398)
                      ..=...+..|+++||++|=+|- |.        .+|++..|++..+.+.     .|-..+      |. .+...+..+..
T Consensus       150 e~i~~a~~ia~eaGADfVKTST-Gf--------~~~gAt~e~v~lm~~~I~~~~~g~~v~VKaaGGIrt~~~al~~i~ag  220 (260)
T 1p1x_A          150 ALIRKASEISIKAGADFIKTST-GK--------VAVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAIA  220 (260)
T ss_dssp             HHHHHHHHHHHHTTCSEEECCC-SC--------SSCCCCHHHHHHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCEEEeCC-CC--------CCCCCCHHHHHHHHHHHHHhcCCCCceEEEeCCCCCHHHHHHHHHhh
Confidence            4334567788999999999986 22        3468888977766543     222222      22 44555555555


Q ss_pred             HHHhCC
Q 015894          372 CKHLGR  377 (398)
Q Consensus       372 ~~~~g~  377 (398)
                      .+++|-
T Consensus       221 a~~lG~  226 (260)
T 1p1x_A          221 DELFGA  226 (260)
T ss_dssp             HHHHCT
T ss_pred             hhhccc
Confidence            555554

>1zlp_A PSR132, petal death protein; TIM-barrel, helix swapping,2-ethyl-3-methylmalate lyase, 2-P methylmalate lyase, lyase/PEP mutase superfamily; 2.70A {Dianthus caryophyllus}

Probab=90.56  E-value=5.9  Score=38.44  Aligned_cols=205  Identities=12%  Similarity=0.112  Sum_probs=117.5

Q ss_pred             HHHHHHhcCCCEEEEecC-C------CCCcccCCCCHHHHHHHHHhcc-CC-cEEEEe--C----CH----hhHHHHHHc
Q 015894          124 LIKLLVSSGLAVVEATSF-V------SPKWVPQLADAKDVMAAIQNVE-GA-RFPVLT--P----NL----KGFEAAVAA  184 (398)
Q Consensus       124 ia~~L~~aGv~~IEvG~~-~------~~~~~p~~~D~~~v~~~i~~~~-~~-~l~~l~--~----n~----~~ie~a~~~  184 (398)
                      -++.++++|++.|=+|.. .      .|+..  .-+.++++..++.+. .+ .+.+++  +    +.    +-+++..++
T Consensus        51 sA~i~e~aGfdai~vs~~~~a~~~lG~pD~~--~vt~~em~~~~~~I~r~~~~~PviaD~d~Gyg~~~~v~~tv~~l~~a  128 (318)
T 1zlp_A           51 SAAVVEKTGFHAAFVSGYSVSAAMLGLPDFG--LLTTTEVVEATRRITAAAPNLCVVVDGDTGGGGPLNVQRFIRELISA  128 (318)
T ss_dssp             HHHHHHHTTCSEEEECHHHHHHHHHCCCSSS--CSCHHHHHHHHHHHHHHSSSSEEEEECTTCSSSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCCCEEEECcHHHhhHhcCCCCCC--CCCHHHHHHHHHHHHhhccCCCEEEeCCCCCCCHHHHHHHHHHHHHc
Confidence            356778899999999853 1      13322  235667766665432 12 233333  2    22    235566789


Q ss_pred             CCCEEEEeccCchH---HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCC-CCCHHHHHHHHHHHHhC
Q 015894          185 GAKEVAIFASASES---FSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEG-MVPPSKVAYVSKQLYDM  260 (398)
Q Consensus       185 Gv~~v~i~~~~Sd~---~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~-r~~~~~l~~~a~~l~~~  260 (398)
                      |+.-|+|-..+.+-   |..-+-=.+.++..++++.+++....-++.+.+--       ++. ....+..++-++.+.++
T Consensus       129 Gaagv~iED~~~~k~cgH~~gk~L~p~~e~~~rI~Aa~~A~~~~~~~I~ARt-------da~a~~gl~~ai~Ra~Ay~eA  201 (318)
T 1zlp_A          129 GAKGVFLEDQVWPKKCGHMRGKAVVPAEEHALKIAAAREAIGDSDFFLVART-------DARAPHGLEEGIRRANLYKEA  201 (318)
T ss_dssp             TCCEEEEECBCSSCCCSSSSCCCBCCHHHHHHHHHHHHHHHTTSCCEEEEEE-------CTHHHHHHHHHHHHHHHHHHT
T ss_pred             CCcEEEECCCCCCccccCCCCCccCCHHHHHHHHHHHHHhcccCCcEEEEee-------HHhhhcCHHHHHHHHHHHHHc
Confidence            99999998876421   11000013567777887666665544455554211       110 01124666677788899


Q ss_pred             CCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccch-HHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCC
Q 015894          261 GCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQ-ALSNILASLQMGISTVDSSVSGLGGCPYAKGASG  339 (398)
Q Consensus       261 Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~Gl-A~ANalaAl~aGa~~VD~Sv~GlGecp~a~graG  339 (398)
                      |||.|.+.   |.-+++.+.++.+.+    + +|+-+-.-. +|. ..-+.-.--++|+++|-....++        |+-
T Consensus       202 GAd~i~~e---~~~~~e~~~~i~~~l----~-~P~lan~~~-~g~~~~~~~~eL~~lGv~~v~~~~~~~--------raa  264 (318)
T 1zlp_A          202 GADATFVE---APANVDELKEVSAKT----K-GLRIANMIE-GGKTPLHTPEEFKEMGFHLIAHSLTAV--------YAT  264 (318)
T ss_dssp             TCSEEEEC---CCCSHHHHHHHHHHS----C-SEEEEEECT-TSSSCCCCHHHHHHHTCCEEEECSHHH--------HHH
T ss_pred             CCCEEEEc---CCCCHHHHHHHHHhc----C-CCEEEEecc-CCCCCCCCHHHHHHcCCeEEEEchHHH--------HHH
Confidence            99999986   334456666555544    3 344332211 111 01113344468999998877766        666


Q ss_pred             CccHHHHHHHHHhCC
Q 015894          340 NVATEDVVYMLNGLG  354 (398)
Q Consensus       340 Na~lE~vv~~L~~~G  354 (398)
                      +.++++++..+++.|
T Consensus       265 ~~a~~~~~~~l~~~g  279 (318)
T 1zlp_A          265 ARALVNIMKILKEKG  279 (318)
T ss_dssp             HHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcC
Confidence            888888888887644

>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0

Probab=90.53  E-value=1.6  Score=41.78  Aligned_cols=82  Identities=16%  Similarity=0.061  Sum_probs=69.5

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcCc---CCHHHHHHHHHHHHhhC-CCCeEEEEe-CCccchHHHHHHHHHHhC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGV---GTPGTVIPMLEAVLDAV-PVDKLAVHF-HDTYGQALSNILASLQMG  317 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~-p~~~l~~H~-Hnd~GlA~ANalaAl~aG  317 (398)
                      +..|.+.+.++++.+.+.|++.|.++-|.|-   +++++-.++++.+.+.. ..+++-+|. +|+..-++..+..|-++|
T Consensus        23 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~G  102 (297)
T 3flu_A           23 GSIHYEQLRDLIDWHIENGTDGIVAVGTTGESATLSVEEHTAVIEAVVKHVAKRVPVIAGTGANNTVEAIALSQAAEKAG  102 (297)
T ss_dssp             SCBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcC
Confidence            5789999999999999999999999999995   57788888888888765 345677765 689999999999999999


Q ss_pred             CCEEeec
Q 015894          318 ISTVDSS  324 (398)
Q Consensus       318 a~~VD~S  324 (398)
                      |+.+=+.
T Consensus       103 adavlv~  109 (297)
T 3flu_A          103 ADYTLSV  109 (297)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEC
Confidence            9977554

>1z41_A YQJM, probable NADH-dependent flavin oxidoreductase YQJ; FMN, beta-alpha-barrel; HET: FMN; 1.30A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1z42_A* 1z44_A* 1z48_A*

Probab=90.50  E-value=3.9  Score=39.65  Aligned_cols=118  Identities=12%  Similarity=0.135  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCcEEEEEeeeecC----------CC----------CCCCCH-------HHHHHHHHHHHhC
Q 015894          208 IEDSLIRYRDVALAARELSIPVRGYLSCVVGC----------PV----------EGMVPP-------SKVAYVSKQLYDM  260 (398)
Q Consensus       208 ~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~----------~~----------~~r~~~-------~~l~~~a~~l~~~  260 (398)
                      .++.++..+.+++.+++.|-.+.+.|... |-          |-          ....+.       +.+.+.++.+.++
T Consensus        78 ~d~~~~~~~~~~~~vh~~g~~i~~QL~h~-Gr~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~~i~~~~~aA~~a~~a  156 (338)
T 1z41_A           78 SDEHIEGFAKLTEQVKEQGSKIGIQLAHA-GRKAELEGDIFAPSAIAFDEQSATPVEMSAEKVKETVQEFKQAAARAKEA  156 (338)
T ss_dssp             STHHHHHHHHHHHHHHHTTCEEEEEEECC-GGGCCCSSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHHHhcCCEEEEEecCC-CcccCCCCCCcCCCCCCCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHc
Confidence            34556777888888899998887777642 10          00          000111       4566778888899


Q ss_pred             CCCEEEEc-------------------cCcCcCC---HHHHHHHHHHHHhhCCCCeEEEEeCC--------ccchHHHHH
Q 015894          261 GCSEISLG-------------------DTIGVGT---PGTVIPMLEAVLDAVPVDKLAVHFHD--------TYGQALSNI  310 (398)
Q Consensus       261 Gad~I~L~-------------------DT~G~~~---P~~v~~lv~~l~~~~p~~~l~~H~Hn--------d~GlA~ANa  310 (398)
                      |.|.|-|-                   |-.|...   +..+.++++++++.+ +.+|.+..--        +...++.-+
T Consensus       157 GfDgVeih~~~gyLl~qFlsp~~n~R~d~yGGslenr~r~~~eiv~avr~~v-~~pv~vris~~~~~~~g~~~~~~~~~a  235 (338)
T 1z41_A          157 GFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVW-DGPLFVRVSASDYTDKGLDIADHIGFA  235 (338)
T ss_dssp             TCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHC-CSCEEEEEECCCCSTTSCCHHHHHHHH
T ss_pred             CCCEEEeccccchHHHHccCCCcCCcCcccCcchhhhHHHHHHHHHHHHHHc-CCcEEEEecCcccCCCCCCHHHHHHHH
Confidence            99987653                   3333322   455788999999988 5577776421        222334444


Q ss_pred             HHHHHhCCCEEeecccc
Q 015894          311 LASLQMGISTVDSSVSG  327 (398)
Q Consensus       311 laAl~aGa~~VD~Sv~G  327 (398)
                      ....++|++.|+++-..
T Consensus       236 ~~l~~~Gvd~i~v~~~~  252 (338)
T 1z41_A          236 KWMKEQGVDLIDCSSGA  252 (338)
T ss_dssp             HHHHHTTCCEEEEECCC
T ss_pred             HHHHHcCCCEEEEecCc
Confidence            45557999999997643

>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5

Probab=90.48  E-value=2  Score=41.93  Aligned_cols=120  Identities=15%  Similarity=0.188  Sum_probs=58.3

Q ss_pred             CCCHHHHHHHHHHHHhCCCCEEEEc--cCcCcCC------HHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHH
Q 015894          244 MVPPSKVAYVSKQLYDMGCSEISLG--DTIGVGT------PGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQ  315 (398)
Q Consensus       244 r~~~~~l~~~a~~l~~~Gad~I~L~--DT~G~~~------P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~  315 (398)
                      +.+.+...++++.+.++|++.|-+.  |-.+..+      .....++++.+++..|+.+|.+.+.-.+|. ....-.|.+
T Consensus        26 ~~~~e~k~~i~~~L~~~Gvd~IEvG~~~g~p~ssp~~g~~~~~~~e~l~~i~~~~~~~~i~~l~~p~~~~-~~~i~~a~~  104 (345)
T 1nvm_A           26 QYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQIATLLLPGIGS-VHDLKNAYQ  104 (345)
T ss_dssp             CCCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSEEEEEECBTTBC-HHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEecCCCCCCCCCcccCCCCCHHHHHHHHHhhCCCCEEEEEecCCccc-HHHHHHHHh
Confidence            3456666666777766777766663  2111111      122344566666655665665553111221 234555666


Q ss_pred             hCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCC--------CccChHHHHHHHHHHHHH
Q 015894          316 MGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVR--------TNVDIRKLMIAGDFICKH  374 (398)
Q Consensus       316 aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~--------t~iDl~~L~~~~~~v~~~  374 (398)
                      +|++.|...+ .+.+         .-..++++.+.++.|++        +..+.+.+.++++.+.+.
T Consensus       105 aGvd~v~I~~-~~s~---------~~~~~~~i~~ak~~G~~v~~~~~~a~~~~~e~~~~ia~~~~~~  161 (345)
T 1nvm_A          105 AGARVVRVAT-HCTE---------ADVSKQHIEYARNLGMDTVGFLMMSHMIPAEKLAEQGKLMESY  161 (345)
T ss_dssp             HTCCEEEEEE-ETTC---------GGGGHHHHHHHHHHTCEEEEEEESTTSSCHHHHHHHHHHHHHH
T ss_pred             CCcCEEEEEE-eccH---------HHHHHHHHHHHHHCCCEEEEEEEeCCCCCHHHHHHHHHHHHHC
Confidence            6777665532 2211         11234555555544432        234455566665555544

>1ypf_A GMP reductase; GUAC, purines, pyrimidines, nucleosides, nucleotides, nucleo nucleoside interconversions, spine, structural genomics; 1.80A {Bacillus anthracis} PDB: 2a1y_A*

Probab=90.43  E-value=2.4  Score=41.14  Aligned_cols=93  Identities=14%  Similarity=0.100  Sum_probs=63.3

Q ss_pred             HHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCC--CCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCe
Q 015894          217 DVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMG--CSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDK  294 (398)
Q Consensus       217 ~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~G--ad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~  294 (398)
                      +.++.+++.|+.+.+.    +|      .+++. .+.++.+.+.|  ++.|.+ |+ +...|....+.++.+++.+|..+
T Consensus        85 ~~i~~~~~~g~~v~v~----~g------~~~~~-~~~a~~~~~~g~~~~~i~i-~~-~~G~~~~~~~~i~~lr~~~~~~~  151 (336)
T 1ypf_A           85 SFIRDMQSRGLIASIS----VG------VKEDE-YEFVQQLAAEHLTPEYITI-DI-AHGHSNAVINMIQHIKKHLPESF  151 (336)
T ss_dssp             HHHHHHHHTTCCCEEE----EC------CSHHH-HHHHHHHHHTTCCCSEEEE-EC-SSCCSHHHHHHHHHHHHHCTTSE
T ss_pred             HHHHHHHhcCCeEEEe----CC------CCHHH-HHHHHHHHhcCCCCCEEEE-EC-CCCCcHHHHHHHHHHHHhCCCCE
Confidence            3456667778765433    22      12343 35577888999  888776 33 22378889999999999987644


Q ss_pred             EEEEeCCccchHHHHHHHHHHhCCCEEeeccc
Q 015894          295 LAVHFHDTYGQALSNILASLQMGISTVDSSVS  326 (398)
Q Consensus       295 l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~  326 (398)
                      +. ..   ..+....+..|+++||+.|.++-.
T Consensus       152 vi-~G---~v~s~e~A~~a~~aGad~Ivvs~h  179 (336)
T 1ypf_A          152 VI-AG---NVGTPEAVRELENAGADATKVGIG  179 (336)
T ss_dssp             EE-EE---EECSHHHHHHHHHHTCSEEEECSS
T ss_pred             EE-EC---CcCCHHHHHHHHHcCCCEEEEecC
Confidence            44 32   124467889999999999999654

>3tml_A 2-dehydro-3-deoxyphosphooctonate aldolase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 1.90A {Burkholderia cenocepacia} PDB: 3t4c_A

Probab=90.43  E-value=4.8  Score=38.59  Aligned_cols=179  Identities=11%  Similarity=0.091  Sum_probs=103.4

Q ss_pred             CHHHHHHHHHHHHhc----CCCEEEEecCCC-CCccc-CCC--CHHHHHHHHHhc---cCCcEEEEeCCHhhHHHHHHcC
Q 015894          117 PAVVKVELIKLLVSS----GLAVVEATSFVS-PKWVP-QLA--DAKDVMAAIQNV---EGARFPVLTPNLKGFEAAVAAG  185 (398)
Q Consensus       117 ~~~~k~~ia~~L~~a----Gv~~IEvG~~~~-~~~~p-~~~--D~~~v~~~i~~~---~~~~l~~l~~n~~~ie~a~~~G  185 (398)
                      +.++.+++|+.|.++    |+..+=-++|-- |+--| .+.  ..++=++.+++.   .+..+..=......++.+.+. 
T Consensus        29 ~~~~~~e~A~~lk~~~~~~~~~~v~k~~f~KapRTs~~sf~Glg~~~GL~~L~~~~~e~Glp~~tev~d~~~v~~l~~~-  107 (288)
T 3tml_A           29 SEQMTIDTAGRLKEICEKLNVPFIYKSSYDKANRSSGKSFRGLGMDEGLRILSEVKRQLGLPVLTDVHSIDEIEQVASV-  107 (288)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCEEEECBC--------------CHHHHHHHHHHHHHHHCCCEEEECCSGGGHHHHHHH-
T ss_pred             CHHHHHHHHHHHHHHHHHcCCCEEEecccccCCCCCCCCcCCcCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHh-
Confidence            688889999999876    877664444321 22111 011  112223334322   244433333467788888777 


Q ss_pred             CCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC-CCHHHHHHHHHHHHhCCC--
Q 015894          186 AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGM-VPPSKVAYVSKQLYDMGC--  262 (398)
Q Consensus       186 v~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r-~~~~~l~~~a~~l~~~Ga--  262 (398)
                      ++.+.|-..  +        +...+       .++++.+.|.+|-  +.       .+. .+++++...++.+.+.|.  
T Consensus       108 vd~lkIgA~--~--------~~n~~-------LLr~~a~~gkPVi--lK-------~G~~~t~~e~~~ave~i~~~Gn~~  161 (288)
T 3tml_A          108 VDVLQTPAF--L--------CRQTD-------FIHACARSGKPVN--IK-------KGQFLAPHDMKNVIDKARDAAREA  161 (288)
T ss_dssp             CSEEEECGG--G--------TTCHH-------HHHHHHTSSSCEE--EE-------CCTTCCTTHHHHHHHHHHHHHHTT
T ss_pred             CCEEEECcc--c--------ccCHH-------HHHHHHccCCcEE--Ee-------CCCCCCHHHHHHHHHHHHHcCCCc
Confidence            898888532  1        11111       2445557888875  33       123 478888888888888887  


Q ss_pred             ----CEEEEccCcCcCCHH----HHHHHHHHHHhhCCCCeEEE-EeCC-------------ccchHHHHHHHHHHhCCC-
Q 015894          263 ----SEISLGDTIGVGTPG----TVIPMLEAVLDAVPVDKLAV-HFHD-------------TYGQALSNILASLQMGIS-  319 (398)
Q Consensus       263 ----d~I~L~DT~G~~~P~----~v~~lv~~l~~~~p~~~l~~-H~Hn-------------d~GlA~ANalaAl~aGa~-  319 (398)
                          +.|.|+.-.-...+.    .++. +..+++ + ..|+.+ +.|-             +..+-..-++||+.+||+ 
T Consensus       162 ~~~~~~i~L~erg~~y~~~~~~vdl~~-i~~lk~-~-~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GadG  238 (288)
T 3tml_A          162 GLSEDRFMACERGVSFGYNNLVSDMRS-LAIMRE-T-NAPVVFDATHSVQLPGGQGTSSGGQREFVPVLARAAVATGVAG  238 (288)
T ss_dssp             TCCSCCEEEEECCEECSSSCEECCHHH-HHHGGG-G-SSCEEEEHHHHTCCCC--------CTTHHHHHHHHHHHHCCSE
T ss_pred             cCCCCcEEEEeCCCCCCCCcCcCCHHH-HHHHHh-c-CCcEEEcCCcccccCCcccCCCCCchhhHHHHHHHHHHcCCCE
Confidence                777777632222222    2333 444565 4 567888 7774             233447789999999999 


Q ss_pred             -EEeecc
Q 015894          320 -TVDSSV  325 (398)
Q Consensus       320 -~VD~Sv  325 (398)
                       +|+.=.
T Consensus       239 l~iE~H~  245 (288)
T 3tml_A          239 LFMETHP  245 (288)
T ss_dssp             EEEEEES
T ss_pred             EEEeecc
Confidence             775543

>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0

Probab=90.39  E-value=1.7  Score=40.14  Aligned_cols=68  Identities=18%  Similarity=0.233  Sum_probs=52.1

Q ss_pred             HHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCC
Q 015894          254 SKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLG  329 (398)
Q Consensus       254 a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlG  329 (398)
                      ++++.++|+|.|.+ |+.....|..+.++++.+++.  +..+..-+|+     ...+..|.++|+++|=+++.|+.
T Consensus        94 i~~~~~~Gad~V~l-~~~~~~~p~~l~~~i~~~~~~--g~~v~~~v~t-----~eea~~a~~~Gad~Ig~~~~g~t  161 (232)
T 3igs_A           94 VDALAQAGAAIIAV-DGTARQRPVAVEALLARIHHH--HLLTMADCSS-----VDDGLACQRLGADIIGTTMSGYT  161 (232)
T ss_dssp             HHHHHHHTCSEEEE-ECCSSCCSSCHHHHHHHHHHT--TCEEEEECCS-----HHHHHHHHHTTCSEEECTTTTSS
T ss_pred             HHHHHHcCCCEEEE-CccccCCHHHHHHHHHHHHHC--CCEEEEeCCC-----HHHHHHHHhCCCCEEEEcCccCC
Confidence            56678899998854 777777899999999999874  3456665664     46678899999999976676653

>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0

Probab=90.37  E-value=12  Score=35.35  Aligned_cols=158  Identities=13%  Similarity=0.072  Sum_probs=91.1

Q ss_pred             HHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe----CCHhhHHHHHHcCCCEEEEeccC
Q 015894          120 VKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT----PNLKGFEAAVAAGAKEVAIFASA  195 (398)
Q Consensus       120 ~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~----~n~~~ie~a~~~Gv~~v~i~~~~  195 (398)
                      +-.++++...+.|...|-+--  .+.+..  ... +.+..+++..+.  .++.    ....++..+.++|+|.|.+-...
T Consensus        80 dp~~~A~~y~~~GA~~IsVlt--d~~~f~--Gs~-~~L~~ir~~v~l--PVl~Kdfi~d~~qi~ea~~~GAD~VlLi~a~  152 (272)
T 3tsm_A           80 DPPALAKAYEEGGAACLSVLT--DTPSFQ--GAP-EFLTAARQACSL--PALRKDFLFDPYQVYEARSWGADCILIIMAS  152 (272)
T ss_dssp             CHHHHHHHHHHTTCSEEEEEC--CSTTTC--CCH-HHHHHHHHTSSS--CEEEESCCCSTHHHHHHHHTTCSEEEEETTT
T ss_pred             CHHHHHHHHHHCCCCEEEEec--cccccC--CCH-HHHHHHHHhcCC--CEEECCccCCHHHHHHHHHcCCCEEEEcccc
Confidence            347799999999999997732  111110  123 344555543333  3333    34557889999999999987653


Q ss_pred             chHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcC-
Q 015894          196 SESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVG-  274 (398)
Q Consensus       196 Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~-  274 (398)
                      =+              -+.+.+++++++++|+.+-+.+           .+.+++    +++.++|++.|.+--..... 
T Consensus       153 L~--------------~~~l~~l~~~a~~lGl~~lvev-----------h~~eEl----~~A~~~ga~iIGinnr~l~t~  203 (272)
T 3tsm_A          153 VD--------------DDLAKELEDTAFALGMDALIEV-----------HDEAEM----ERALKLSSRLLGVNNRNLRSF  203 (272)
T ss_dssp             SC--------------HHHHHHHHHHHHHTTCEEEEEE-----------CSHHHH----HHHTTSCCSEEEEECBCTTTC
T ss_pred             cC--------------HHHHHHHHHHHHHcCCeEEEEe-----------CCHHHH----HHHHhcCCCEEEECCCCCccC
Confidence            11              1446678899999999875322           244443    44557999988776322111 


Q ss_pred             --CHHHHHHHHHHHHhhCC-CCeEEEEeCCccch-HHHHHHHHHHhCCCEE
Q 015894          275 --TPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQ-ALSNILASLQMGISTV  321 (398)
Q Consensus       275 --~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~Gl-A~ANalaAl~aGa~~V  321 (398)
                        .+....++    .+.+| +.++-.=.    |. ....+..+.++|++.|
T Consensus       204 ~~dl~~~~~L----~~~ip~~~~vIaes----GI~t~edv~~l~~~Ga~gv  246 (272)
T 3tsm_A          204 EVNLAVSERL----AKMAPSDRLLVGES----GIFTHEDCLRLEKSGIGTF  246 (272)
T ss_dssp             CBCTHHHHHH----HHHSCTTSEEEEES----SCCSHHHHHHHHTTTCCEE
T ss_pred             CCChHHHHHH----HHhCCCCCcEEEEC----CCCCHHHHHHHHHcCCCEE
Confidence              22333333    34454 33333211    22 2345566677888754

>3gk0_A PNP synthase, pyridoxine 5'-phosphate synthase; decode, ssgcid, niaid, SBRI, cytoplasm, pyridoxine biosynthesis, transferase; HET: DXP; 2.28A {Burkholderia pseudomallei}

Probab=90.36  E-value=0.71  Score=43.88  Aligned_cols=120  Identities=18%  Similarity=0.245  Sum_probs=77.7

Q ss_pred             HHHHHHHHHhc--cCCcEEEEe-CCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcE
Q 015894          153 AKDVMAAIQNV--EGARFPVLT-PNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPV  229 (398)
Q Consensus       153 ~~~v~~~i~~~--~~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v  229 (398)
                      .+.+...++++  .+++++.++ +..+.++.|.+.|++.|-++..   .+.........++.|+++.+++++|+++|+.|
T Consensus       141 ~~~L~~~i~~L~~~GIrVSLFIDpd~~qI~aA~~~GAd~IELhTG---~YA~a~~~~~~~~el~rl~~aA~~A~~lGL~V  217 (278)
T 3gk0_A          141 FDAVRAACKQLADAGVRVSLFIDPDEAQIRAAHETGAPVIELHTG---RYADAHDAAEQQREFERIATGVDAGIALGLKV  217 (278)
T ss_dssp             HHHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHHTCSEEEECCH---HHHTCSSHHHHHHHHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhCcCEEEEecc---hhhccCCchhHHHHHHHHHHHHHHHHHcCCEE
Confidence            44455555544  367777777 6788999999999999999754   12211101125568999999999999999998


Q ss_pred             EEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE-----ccCcCcCCHHHHHHHHHHHHh
Q 015894          230 RGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL-----GDTIGVGTPGTVIPMLEAVLD  288 (398)
Q Consensus       230 ~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L-----~DT~G~~~P~~v~~lv~~l~~  288 (398)
                      .+      |   + -.+.+.+..+++   --+...++|     ++.+=++.+..|+++.+.+++
T Consensus       218 nA------G---H-GL~y~Nv~~ia~---ip~i~ElnIGHaiIa~Al~~Gl~~AVr~mk~lm~~  268 (278)
T 3gk0_A          218 NA------G---H-GLHYTNVQAIAA---LPGIAELNIGHAIVAHAVFVGWDNAVREMKAIMVA  268 (278)
T ss_dssp             EE------C---T-TCCTTTHHHHHT---CTTEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             ec------C---C-CCCHHHHHHHHh---CCCCeEEecCHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            72      1   2 233344444421   124566666     555666677777777777654

>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics, structural genomics center for infectious disease, ssgcid; 1.70A {Entamoeba histolytica}

Probab=90.30  E-value=7.4  Score=36.25  Aligned_cols=107  Identities=23%  Similarity=0.313  Sum_probs=66.8

Q ss_pred             eeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCc---CCHHHHHHHHHHHHhhCCCCeEEE----EeCCccchH
Q 015894          234 SCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGV---GTPGTVIPMLEAVLDAVPVDKLAV----HFHDTYGQA  306 (398)
Q Consensus       234 ~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p~~~l~~----H~Hnd~GlA  306 (398)
                      +.+.|.|. +..+.+.-..-++.+.+.|||.|-+.=-+|.   ..-..+.+-++.+++..++..+=+    -.=++- .=
T Consensus        82 ~tVigFP~-G~~~~~~Kv~Ea~~Ai~~GAdEIDmViNig~lk~g~~~~v~~eI~~v~~a~~~~~lKVIlEt~~Lt~e-ei  159 (239)
T 3ngj_A           82 CTVIGFPL-GATPSEVKAYETKVAVEQGAEEVDMVINIGMVKAKKYDDVEKDVKAVVDASGKALTKVIIECCYLTNE-EK  159 (239)
T ss_dssp             EEEESTTT-CCSCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHHTTSEEEEECCGGGSCHH-HH
T ss_pred             EEEeccCC-CCCchHHHHHHHHHHHHcCCCEEEEEeehHHhccccHHHHHHHHHHHHHHhcCCceEEEEecCCCCHH-HH
Confidence            33455674 4445555455577788899999988877776   445667778888887654322221    111222 22


Q ss_pred             HHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q 015894          307 LSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLN  351 (398)
Q Consensus       307 ~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~  351 (398)
                      ...+..|.++||++|.+|-+ .        .+|++..|++-.+.+
T Consensus       160 ~~a~~ia~~aGADfVKTSTG-f--------~~ggAt~~dv~lmr~  195 (239)
T 3ngj_A          160 VEVCKRCVAAGAEYVKTSTG-F--------GTHGATPEDVKLMKD  195 (239)
T ss_dssp             HHHHHHHHHHTCSEEECCCS-S--------SSCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHCcCEEECCCC-C--------CCCCCCHHHHHHHHH
Confidence            33445568999999999853 2        245677888776664

>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*

Probab=90.25  E-value=6.6  Score=39.17  Aligned_cols=140  Identities=12%  Similarity=0.038  Sum_probs=84.7

Q ss_pred             HHHHHcCCCEEEEecc--------CchH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-C-CcEEEEEeeeecCC-CCCCC
Q 015894          179 EAAVAAGAKEVAIFAS--------ASES--FSKSNINCTIEDSLIRYRDVALAAREL-S-IPVRGYLSCVVGCP-VEGMV  245 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~--------~Sd~--~~~~~~~~s~~~~l~~~~~~v~~ak~~-G-~~v~~~l~~~fg~~-~~~r~  245 (398)
                      ++|.++|.|.|.|-..        +|+.  .....+|-+.++-.+.+.++++.+|+. | ..|.+-++..-... .....
T Consensus       178 ~~a~~AGfDgVEIh~ahGYLl~QFLsp~~N~RtD~yGGslenR~rf~~Eiv~aVr~avg~~~V~vRls~~~~~~g~~~~~  257 (402)
T 2hsa_B          178 LNAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVSPAIDHLDAMDSN  257 (402)
T ss_dssp             HHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECSSCCSTTCCCSC
T ss_pred             HHHHHcCCCEEEECCccchHHHhccCCccCccCCccCcChhhhhHHHHHHHHHHHHHhCCCcEEEEeccccccCCCCCCC
Confidence            4567899999988653        1232  233445667777777788888888764 4 25555455310000 01223


Q ss_pred             CHHHHHHHHHHHHhCC------CCEEEEccCc--C-cCCH-------HHHHHHHHHHHhhCCCCeEEEEeCCccchHHHH
Q 015894          246 PPSKVAYVSKQLYDMG------CSEISLGDTI--G-VGTP-------GTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSN  309 (398)
Q Consensus       246 ~~~~l~~~a~~l~~~G------ad~I~L~DT~--G-~~~P-------~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~AN  309 (398)
                      +.+...++++.+.++|      ++.|.+..-.  + ...|       ..-.++++.+++.++. ||..=+-  .  -...
T Consensus       258 ~~~~~~~la~~le~~G~~gg~~vd~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vk~~~~i-Pvi~~G~--i--~~~~  332 (402)
T 2hsa_B          258 PLSLGLAVVERLNKIQLHSGSKLAYLHVTQPRYVAYGQTEAGRLGSEEEEARLMRTLRNAYQG-TFICSGG--Y--TREL  332 (402)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTSCCSEEEEECCCCCTTTTSSSTTTTHHHHHHHHHHHHHHHCSS-CEEEESS--C--CHHH
T ss_pred             CHHHHHHHHHHHHhcCCccCCceEEEEEecCccccccCCccccccCCcchHHHHHHHHHHCCC-CEEEeCC--C--CHHH
Confidence            5678899999999999      9988884311  0 0112       1235678888888754 4433221  1  2466


Q ss_pred             HHHHHHhC-CCEEee
Q 015894          310 ILASLQMG-ISTVDS  323 (398)
Q Consensus       310 alaAl~aG-a~~VD~  323 (398)
                      +..+++.| ||.|-.
T Consensus       333 a~~~l~~g~aD~V~i  347 (402)
T 2hsa_B          333 GIEAVAQGDADLVSY  347 (402)
T ss_dssp             HHHHHHTTSCSEEEE
T ss_pred             HHHHHHCCCCceeee
Confidence            77888888 887643

>3i4e_A Isocitrate lyase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.69A {Burkholderia pseudomallei}

Probab=90.18  E-value=5.7  Score=40.27  Aligned_cols=167  Identities=11%  Similarity=0.011  Sum_probs=104.5

Q ss_pred             hHHHHHHcCCCEEEEeccCchH----HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEE-EEeeeecC----CCC-----
Q 015894          177 GFEAAVAAGAKEVAIFASASES----FSKSNINCTIEDSLIRYRDVALAARELSIPVRG-YLSCVVGC----PVE-----  242 (398)
Q Consensus       177 ~ie~a~~~Gv~~v~i~~~~Sd~----~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~-~l~~~fg~----~~~-----  242 (398)
                      -++..+++|+-.|+|-+.+...    |...+-=.+.++..++++.+...++..|..+.+ .=+.+.+.    .+.     
T Consensus       172 ~vk~~~~aGaaGi~iEDq~~~~KkCGH~~gk~lv~~~e~v~rI~Aar~A~~~~g~d~~IiARTDa~~a~l~~s~~d~~d~  251 (439)
T 3i4e_A          172 LMKAMIEAGASGVHFEDQLASVKKCGHMGGKVLVPTREAVAKLTAARLAADVMGTPTVLVARTDAEAADLITSDIDDNDK  251 (439)
T ss_dssp             HHHHHHHHTCSEEEEESBCGGGCBCSTTCBCCBCCHHHHHHHHHHHHHHHHHHTCCCEEEEEECTTTCCEESCCCCTTTG
T ss_pred             HHHHHHHcCCEEEEEeCCCCCccccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEEEEEcCcccccccccccccccc
Confidence            3567789999999999887531    111112247899999998777777667765321 01111000    000     


Q ss_pred             --------------CCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccc----
Q 015894          243 --------------GMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYG----  304 (398)
Q Consensus       243 --------------~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~G----  304 (398)
                                    .+...+..++=++...+ |||.|.+-  .|.-+++++..+.+.++..+|...+.+-+--.+.    
T Consensus       252 ~fi~G~r~~eg~~~~~~gldeAI~Ra~AY~~-GAD~if~E--~~~~~~eei~~f~~~v~~~~P~~~l~~~~sPsfnw~~~  328 (439)
T 3i4e_A          252 PYLTGERTVEGFFRTKPGLEQAISRGLAYAP-YADLIWCE--TGKPDLEYAKKFAEAIHKQFPGKLLSYNCSPSFNWKKN  328 (439)
T ss_dssp             GGEEEEECTTSCEEECCSHHHHHHHHHHHTT-TCSEEEEC--CSSCCHHHHHHHHHHHHHHSTTCEEEEECCSSSCHHHH
T ss_pred             hhhcccCcccccccccCCHHHHHHHHHHHHh-hCCEEEec--CCCCCHHHHHHHHHHhcccCCceEEeeCCCCCCcCccc
Confidence                          01235555555665566 99999871  2456899999999999988886555543222222    


Q ss_pred             hH---HHH-HHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCC
Q 015894          305 QA---LSN-ILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLG  354 (398)
Q Consensus       305 lA---~AN-alaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~G  354 (398)
                      +.   +++ .-.--++|+.++=.++.|+        ++-+.+++++...+.+.|
T Consensus       329 ~~~~~~~~f~~eL~~lGv~~v~~~la~~--------raa~~A~~~~a~~i~~~G  374 (439)
T 3i4e_A          329 LDDATIAKFQKELGAMGYKFQFITLAGF--------HALNYSMFNLAHGYARTQ  374 (439)
T ss_dssp             SCHHHHHTHHHHHHHHTCCEEEETTHHH--------HHHHHHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHcCCeEEEeChHHH--------HHHHHHHHHHHHHHHHhC
Confidence            11   111 1223358999999999888        777888888888776644

>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation, beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*

Probab=90.11  E-value=13  Score=35.29  Aligned_cols=123  Identities=15%  Similarity=0.131  Sum_probs=76.5

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEccCc-CcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHH-HHHhCCCEEe
Q 015894          245 VPPSKVAYVSKQLYDMGCSEISLGDTI-GVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILA-SLQMGISTVD  322 (398)
Q Consensus       245 ~~~~~l~~~a~~l~~~Gad~I~L~DT~-G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANala-Al~aGa~~VD  322 (398)
                      .+++.+.+.++.+.+.|+..|.|.+-- -.+.+..+.++++.+++.  +  +.+++++  |+-....+. -.++|++.+.
T Consensus        84 ls~eei~~~i~~~~~~g~~~i~~~gGe~p~~~~~~~~~li~~i~~~--~--~~i~~s~--g~l~~e~l~~L~~ag~~~v~  157 (348)
T 3iix_A           84 MTPEEIVERARLAVQFGAKTIVLQSGEDPYXMPDVISDIVKEIKKM--G--VAVTLSL--GEWPREYYEKWKEAGADRYL  157 (348)
T ss_dssp             CCHHHHHHHHHHHHHTTCSEEEEEESCCGGGTTHHHHHHHHHHHTT--S--CEEEEEC--CCCCHHHHHHHHHHTCCEEE
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEEeCCCCCccHHHHHHHHHHHHhc--C--ceEEEec--CCCCHHHHHHHHHhCCCEEe
Confidence            478999999999999999999995432 223347888999998876  3  4444433  333333444 4468999999


Q ss_pred             eccccCCCCCCCCCCCCCccHHHHHHHHH---hCCCCC---------ccChHHHHHHHHHHHHH
Q 015894          323 SSVSGLGGCPYAKGASGNVATEDVVYMLN---GLGVRT---------NVDIRKLMIAGDFICKH  374 (398)
Q Consensus       323 ~Sv~GlGecp~a~graGNa~lE~vv~~L~---~~Gi~t---------~iDl~~L~~~~~~v~~~  374 (398)
                      .++-+.-.=-+.. -.+..+.++++..++   +.|+..         +-+.+.+.++.+++.+.
T Consensus       158 i~let~~~~~~~~-i~~~~~~~~~~~~i~~~~~~Gi~v~~~~i~G~p~et~e~~~~~~~~l~~l  220 (348)
T 3iix_A          158 LRHETANPVLHRK-LRPDTSFENRLNCLLTLKELGYETGAGSMVGLPGQTIDDLVDDLLFLKEH  220 (348)
T ss_dssp             CCCBCSCHHHHHH-HSTTSCHHHHHHHHHHHHHTTCEEEECBEESCTTCCHHHHHHHHHHHHHH
T ss_pred             eeeeeCCHHHHHH-hCCCcCHHHHHHHHHHHHHhCCeeccceEEeCCCCCHHHHHHHHHHHHhc
Confidence            8887763100000 011126677666654   456542         23556777777777665

>2qw5_A Xylose isomerase-like TIM barrel; putative sugar phosphate isomerase/epimerase; 1.78A {Anabaena variabilis atcc 29413}

Probab=90.08  E-value=4.5  Score=38.30  Aligned_cols=135  Identities=9%  Similarity=-0.027  Sum_probs=69.1

Q ss_pred             HHHHHHHHHHHHHHHHhCCCcEEEEEeee-ecCCCCCCCC-------------H-------HHHHHHHHHHHhCCCCEEE
Q 015894          208 IEDSLIRYRDVALAARELSIPVRGYLSCV-VGCPVEGMVP-------------P-------SKVAYVSKQLYDMGCSEIS  266 (398)
Q Consensus       208 ~~~~l~~~~~~v~~ak~~G~~v~~~l~~~-fg~~~~~r~~-------------~-------~~l~~~a~~l~~~Gad~I~  266 (398)
                      +++.++.+++.++.|+++|.++....... +|. ..+..+             .       +.+.++++.+.+.|+. +.
T Consensus       104 r~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~-l~  181 (335)
T 2qw5_A          104 RQEALEYLKSRVDITAALGGEIMMGPIVIPYGV-FPTTDFNEPIWSDELQEHLKVRYANAQPILDKLGEYAEIKKVK-LA  181 (335)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEEEECCSSCTTC-CCBCTTCCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCE-EE
T ss_pred             HHHHHHHHHHHHHHHHHcCCCEEeccccCcccc-ccCCcccccccccchhhhHHHHHHHHHHHHHHHHHHHHHcCCE-EE
Confidence            45678889999999999998865211100 111 001111             1       2334455556667874 44


Q ss_pred             Ecc-----CcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchH------HH---HHHHHHH--hCCCEEeeccccCCC
Q 015894          267 LGD-----TIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQA------LS---NILASLQ--MGISTVDSSVSGLGG  330 (398)
Q Consensus       267 L~D-----T~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA------~A---NalaAl~--aGa~~VD~Sv~GlGe  330 (398)
                      +--     +.-+-++.++.++++.+..  |.  +++.+  |.|..      ..   ..+..+.  -=+..|+..=.  ..
T Consensus       182 lE~~~~~~~~~~~t~~~~~~ll~~v~~--~~--vgl~~--D~~H~~~~g~d~~~~~~~l~~~~~~~ri~~vHlkD~--~~  253 (335)
T 2qw5_A          182 IEPITHWETPGPNKLSQLIEFLKGVKS--KQ--VGVVI--DSAHEILDGEGPEIFKTQVEYLAQQGRLHYVQVSPP--DR  253 (335)
T ss_dssp             ECCCCTTTCSSCCSHHHHHHHHTTCCC--TT--EEEEE--EHHHHHHHCCCHHHHHHHHHHHHHHTCEEEEEECCT--TS
T ss_pred             EeeCCcccccccCCHHHHHHHHHhcCC--CC--eeEEE--ecccchhccCChHHHHHHHHHhCCcCCEEEEEECCC--CC
Confidence            422     2234466666665544321  32  44322  22222      22   2222222  22345555432  23


Q ss_pred             CCCCCCCCCCccHHHHHHHHHhCCCC
Q 015894          331 CPYAKGASGNVATEDVVYMLNGLGVR  356 (398)
Q Consensus       331 cp~a~graGNa~lE~vv~~L~~~Gi~  356 (398)
                      +|  + +.|..+.+.++..|++ |++
T Consensus       254 ~~--~-G~G~id~~~i~~~L~~-gy~  275 (335)
T 2qw5_A          254 GA--L-HTSWLPWKSFLTPIVK-VYD  275 (335)
T ss_dssp             SC--S-SSSCCCHHHHHHHHHH-HCC
T ss_pred             CC--C-CCCCcCHHHHHHHHHc-cCC
Confidence            22  2 3689999999999998 774

>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9

Probab=90.02  E-value=6.5  Score=37.58  Aligned_cols=157  Identities=13%  Similarity=0.088  Sum_probs=97.8

Q ss_pred             HHHHHHHHhcCCCEEEEecCCCCCcc---------cCCCCHHHHHHHHHhc--cCCcEEEEeCCHhhHHHHHHcCCCEEE
Q 015894          122 VELIKLLVSSGLAVVEATSFVSPKWV---------PQLADAKDVMAAIQNV--EGARFPVLTPNLKGFEAAVAAGAKEVA  190 (398)
Q Consensus       122 ~~ia~~L~~aGv~~IEvG~~~~~~~~---------p~~~D~~~v~~~i~~~--~~~~l~~l~~n~~~ie~a~~~Gv~~v~  190 (398)
                      -.+++.|.++|+.-+ +=++...-+-         ..| ..++..+.+++.  .+....+.+.|.++.+.+.++|+|.|.
T Consensus       111 g~~Le~lk~~Gf~Gv-~N~ptvglidG~fr~~LEE~gm-~~~~eve~I~~A~~~gL~Ti~~v~~~eeA~amA~agpDiI~  188 (286)
T 2p10_A          111 STFLRELKEIGFAGV-QNFPTVGLIDGLFRQNLEETGM-SYAQEVEMIAEAHKLDLLTTPYVFSPEDAVAMAKAGADILV  188 (286)
T ss_dssp             HHHHHHHHHHTCCEE-EECSCGGGCCHHHHHHHHHTTC-CHHHHHHHHHHHHHTTCEECCEECSHHHHHHHHHHTCSEEE
T ss_pred             HHHHHHHHHhCCceE-EECCCcccccchhhhhHhhcCC-CHHHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHcCCCEEE
Confidence            345599999999999 7665211000         001 123344444432  355555667899999999999999999


Q ss_pred             EeccCchH-HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcc
Q 015894          191 IFASASES-FSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGD  269 (398)
Q Consensus       191 i~~~~Sd~-~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~D  269 (398)
                      +..+..-- .+-.+...|.+++.+.+.++++.+++..-.+. .++.  |.|.   .+++++.++.+.  --|++-+..+-
T Consensus       189 ~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnpdvi-vLc~--gGpI---stpeDv~~~l~~--t~G~~G~~gAS  260 (286)
T 2p10_A          189 CHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRDDII-ILSH--GGPI---ANPEDARFILDS--CQGCHGFYGAS  260 (286)
T ss_dssp             EECSCC---------CCCHHHHHHHHHHHHHHHHHHCSCCE-EEEE--STTC---CSHHHHHHHHHH--CTTCCEEEESH
T ss_pred             ECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCCCcE-EEec--CCCC---CCHHHHHHHHhc--CCCccEEEeeh
Confidence            87774211 11223456788888999999999999877664 2332  2233   467777665531  12889988888


Q ss_pred             CcCcCCHHH-HHHHHHHHHh
Q 015894          270 TIGVGTPGT-VIPMLEAVLD  288 (398)
Q Consensus       270 T~G~~~P~~-v~~lv~~l~~  288 (398)
                      ++--+.|++ +.++++.++.
T Consensus       261 sier~p~e~ai~~~~~~fk~  280 (286)
T 2p10_A          261 SMERLPAEEAIRSQTLAFKA  280 (286)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT
T ss_pred             hhhcCCHHHHHHHHHHHHHh
Confidence            776666543 5666666664

>3cny_A Inositol catabolism protein IOLE; xylose isomerase-like TIM barrel, structural genomics, joint for structural genomics, JCSG; 1.85A {Lactobacillus plantarum WCFS1}

Probab=90.01  E-value=2.4  Score=39.12  Aligned_cols=197  Identities=13%  Similarity=0.093  Sum_probs=0.0

Q ss_pred             HHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCC---------------HhhHHHHHHcCC
Q 015894          122 VELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPN---------------LKGFEAAVAAGA  186 (398)
Q Consensus       122 ~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n---------------~~~ie~a~~~Gv  186 (398)
                      .+.++.+.++|++.||+.     ...|   +.+++.+.+++ .++++.++...               .+-++.|.+.|+
T Consensus        34 ~~~l~~~~~~G~~~vEl~-----~~~~---~~~~~~~~l~~-~gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~lG~  104 (301)
T 3cny_A           34 QQLLSDIVVAGFQGTEVG-----GFFP---GPEKLNYELKL-RNLEIAGQWFSSYIIRDGIEKASEAFEKHCQYLKAINA  104 (301)
T ss_dssp             HHHHHHHHHHTCCEECCC-----TTCC---CHHHHHHHHHH-TTCEECEEEEEECHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCCCEEEec-----CCCC---CHHHHHHHHHH-CCCeEEEEeccCCCChhhHHHHHHHHHHHHHHHHHcCC


Q ss_pred             CEEEEec------cC------------chHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHH
Q 015894          187 KEVAIFA------SA------------SESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPS  248 (398)
Q Consensus       187 ~~v~i~~------~~------------Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~  248 (398)
                      +.|.+..      ..            .+.        ..+...+.+.++.++|++.|+.+.        -+.....-..
T Consensus       105 ~~v~~~~~~~~~~G~~~~~~~~~~~~~~~~--------~~~~~~~~l~~l~~~a~~~gv~l~--------lE~~~~~~~~  168 (301)
T 3cny_A          105 PVAVVSEQTYTIQRSDTANIFKDKPYFTDK--------EWDEVCKGLNHYGEIAAKYGLKVA--------YHHHMGTGIQ  168 (301)
T ss_dssp             CEEEEEECTTCCTTCSSCCTTTCCCCCCHH--------HHHHHHHHHHHHHHHHHHTTCEEE--------EECCTTSSSC
T ss_pred             CEEEecCCCccccCcccCCcccccccCcHH--------HHHHHHHHHHHHHHHHHHcCCEEE--------EecCCCcccC


Q ss_pred             HHHHHHHHHHhCCCCEEEEccCcCcCCHH--HHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccc
Q 015894          249 KVAYVSKQLYDMGCSEISLGDTIGVGTPG--TVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVS  326 (398)
Q Consensus       249 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~--~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~  326 (398)
                      ...++.+.+.+.+.+.+.++==+|.+.-.  +..+.++.+..++    .++|+||..+-...   ....-+....+..-.
T Consensus       169 ~~~~~~~l~~~~~~~~vg~~~D~~h~~~~g~d~~~~l~~~~~~i----~~vHl~D~~~~~~~---~~~~~~~~~~~~~~~  241 (301)
T 3cny_A          169 TKEETDRLMANTDPKLVGLLYDTGHIAVSDGDYMALLNAHIDRV----VHVHFKDVRRSKEE---ECRAKGLTFQGSFLN  241 (301)
T ss_dssp             SHHHHHHHHHTSCTTTCEEEEEHHHHHHHHSCSHHHHHHHGGGE----EEEEECEECHHHHH---HHHHHTCCHHHHHHT
T ss_pred             CHHHHHHHHHhCCccceeEEechHHHHHcCCCHHHHHHHHHhhe----eEEEeecCCcchhh---hhhhcccchhhHhhc


Q ss_pred             c--CCCCCCCCCCCCCccHHHHHHHHHhCCCC
Q 015894          327 G--LGGCPYAKGASGNVATEDVVYMLNGLGVR  356 (398)
Q Consensus       327 G--lGecp~a~graGNa~lE~vv~~L~~~Gi~  356 (398)
                      +  .-=      +.|..+...++..|++.|++
T Consensus       242 ~~~~~~------G~G~id~~~i~~~L~~~gy~  267 (301)
T 3cny_A          242 GMFTVP------GDGDLDFKPVYDKLIANNYK  267 (301)
T ss_dssp             TCEECT------TTSSCCCHHHHHHHHHTTCC
T ss_pred             CccccC------CCCCccHHHHHHHHHhcCCC

>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0

Probab=89.87  E-value=3.8  Score=39.37  Aligned_cols=98  Identities=9%  Similarity=0.072  Sum_probs=51.3

Q ss_pred             HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894          178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL  257 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l  257 (398)
                      ++.+++.. .++-|.+.+...        +.+++    .+.++.|++.|....  +.   -.|. ...+.+.+.+..+.+
T Consensus        67 ~~~~v~~~-grvpViaGvg~~--------~t~~a----i~la~~A~~~Gadav--lv---~~P~-~~~s~~~l~~~f~~v  127 (313)
T 3dz1_A           67 ATRFIKRA-KSMQVIVGVSAP--------GFAAM----RRLARLSMDAGAAGV--MI---APPP-SLRTDEQITTYFRQA  127 (313)
T ss_dssp             HHHHHHHC-TTSEEEEECCCS--------SHHHH----HHHHHHHHHHTCSEE--EE---CCCT-TCCSHHHHHHHHHHH
T ss_pred             HHHHHHHc-CCCcEEEecCCC--------CHHHH----HHHHHHHHHcCCCEE--EE---CCCC-CCCCHHHHHHHHHHH
Confidence            45555554 555555554321        23333    345577777787643  11   1454 445667666666666


Q ss_pred             HhC-C--CCE--EEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEE
Q 015894          258 YDM-G--CSE--ISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVH  298 (398)
Q Consensus       258 ~~~-G--ad~--I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H  298 (398)
                      .+. +  ...  ..++...|.-.+.   +++..|.+.+|++ +++-
T Consensus       128 a~a~~~~lPiilYn~P~~tg~~l~~---~~~~~La~~~pnI-vgiK  169 (313)
T 3dz1_A          128 TEAIGDDVPWVLQDYPLTLSVVMTP---KVIRQIVMDSASC-VMLK  169 (313)
T ss_dssp             HHHHCTTSCEEEEECHHHHCCCCCH---HHHHHHHHHCSSE-EEEE
T ss_pred             HHhCCCCCcEEEEeCccccCcCCCH---HHHHHHHHhCCCE-EEEE
Confidence            543 4  443  3455555654432   2444555557764 6776

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=89.81  E-value=3.1  Score=42.60  Aligned_cols=131  Identities=15%  Similarity=0.132  Sum_probs=78.1

Q ss_pred             HHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEEE-eCCHhhHHHHHHcCCCEEEEeccCc
Q 015894          119 VVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPVL-TPNLKGFEAAVAAGAKEVAIFASAS  196 (398)
Q Consensus       119 ~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l-~~n~~~ie~a~~~Gv~~v~i~~~~S  196 (398)
                      .+-.+.++.|.++|++.|++..-.. .    .....+.++.++ ..|+..+.+- +.+.++.+.+.++|+|.|.+-..--
T Consensus       228 ~~~~~~a~~l~~aG~d~I~id~a~g-~----~~~~~~~v~~i~~~~p~~~Vi~g~v~t~e~a~~l~~aGaD~I~vg~g~G  302 (490)
T 4avf_A          228 ADTGERVAALVAAGVDVVVVDTAHG-H----SKGVIERVRWVKQTFPDVQVIGGNIATAEAAKALAEAGADAVKVGIGPG  302 (490)
T ss_dssp             TTHHHHHHHHHHTTCSEEEEECSCC-S----BHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHTTCSEEEECSSCS
T ss_pred             cchHHHHHHHhhcccceEEecccCC-c----chhHHHHHHHHHHHCCCceEEEeeeCcHHHHHHHHHcCCCEEEECCCCC
Confidence            3446778899999999999975321 0    011234455555 3456554442 4678889999999999998732111


Q ss_pred             h---HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccC
Q 015894          197 E---SFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDT  270 (398)
Q Consensus       197 d---~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT  270 (398)
                      .   .......+..   .+..+.++.+.+++.+++|.+         +.+-.+++.+.+.    .++||+.+.+.=.
T Consensus       303 s~~~t~~~~g~g~p---~~~~l~~v~~~~~~~~iPVIa---------~GGI~~~~di~ka----l~~GAd~V~vGs~  363 (490)
T 4avf_A          303 SICTTRIVAGVGVP---QISAIANVAAALEGTGVPLIA---------DGGIRFSGDLAKA----MVAGAYCVMMGSM  363 (490)
T ss_dssp             TTCHHHHHTCBCCC---HHHHHHHHHHHHTTTTCCEEE---------ESCCCSHHHHHHH----HHHTCSEEEECTT
T ss_pred             cCCCccccCCCCcc---HHHHHHHHHHHhccCCCcEEE---------eCCCCCHHHHHHH----HHcCCCeeeecHH
Confidence            1   1111222222   345556667777777887742         2344456665543    3579998887643

>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A

Probab=89.80  E-value=1.4  Score=42.41  Aligned_cols=82  Identities=15%  Similarity=0.097  Sum_probs=70.6

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcCc---CCHHHHHHHHHHHHhhC-CCCeEEEE-eCCccchHHHHHHHHHHhC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGV---GTPGTVIPMLEAVLDAV-PVDKLAVH-FHDTYGQALSNILASLQMG  317 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~-p~~~l~~H-~Hnd~GlA~ANalaAl~aG  317 (398)
                      +..|.+.+.++++.+.+.|++.|.++-|.|=   +++++-.++++.+.+.. +.++|-+| ++|+..-++..+..|-++|
T Consensus        24 g~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~G  103 (309)
T 3fkr_A           24 GDLDLASQKRAVDFMIDAGSDGLCILANFSEQFAITDDERDVLTRTILEHVAGRVPVIVTTSHYSTQVCAARSLRAQQLG  103 (309)
T ss_dssp             SSBCHHHHHHHHHHHHHTTCSCEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEecCCchHHHHHHHHHHHHHcC
Confidence            5789999999999999999999999999994   67888888888888765 35678888 5789999999999999999


Q ss_pred             CCEEeec
Q 015894          318 ISTVDSS  324 (398)
Q Consensus       318 a~~VD~S  324 (398)
                      |+.+=+.
T Consensus       104 adavlv~  110 (309)
T 3fkr_A          104 AAMVMAM  110 (309)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEc
Confidence            9977654

>2hjp_A Phosphonopyruvate hydrolase; phosporus-Ca cleavage, PEP mutase/isocitrate lyase superfamily; HET: XYS PPR; 1.90A {Variovorax SP} PDB: 2dua_A* 2hrw_A

Probab=89.80  E-value=12  Score=35.80  Aligned_cols=146  Identities=18%  Similarity=0.059  Sum_probs=93.1

Q ss_pred             CcEEEEe-CCHhhHHHHHHcCCCEEEEec-cCchHHHhhh-cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC
Q 015894          166 ARFPVLT-PNLKGFEAAVAAGAKEVAIFA-SASESFSKSN-INCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE  242 (398)
Q Consensus       166 ~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~-~~Sd~~~~~~-~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~  242 (398)
                      -.+.++. .+.-....+.++|++.|.+.. +++-.+-..- ...|.++.+..++.+.+.+   ...|.+.      .|..
T Consensus        15 ~~i~~~~a~D~~sA~~~~~aG~~ai~vs~~~~a~~~G~pD~~~vt~~em~~~~~~I~~~~---~~PviaD------~d~G   85 (290)
T 2hjp_A           15 RLFTAMAAHNPLVAKLAEQAGFGGIWGSGFELSASYAVPDANILSMSTHLEMMRAIASTV---SIPLIAD------IDTG   85 (290)
T ss_dssp             CCEEEEECSSHHHHHHHHHHTCSEEEECHHHHHHHTTSCTTTCSCHHHHHHHHHHHHTTC---SSCEEEE------CTTT
T ss_pred             CcEEEecCCCHHHHHHHHHcCCCEEEEChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcC---CCCEEEE------CCCC
Confidence            3455554 354455566778999998863 3432221111 2357888888776655533   4554322      2333


Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcC------------cCCH-HHHHHHHHHHHhhC--CCCeEEEEeCCc-----
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIG------------VGTP-GTVIPMLEAVLDAV--PVDKLAVHFHDT-----  302 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G------------~~~P-~~v~~lv~~l~~~~--p~~~l~~H~Hnd-----  302 (398)
                      +- +++.+.+.++++.++|+..|.|-|..+            .+.| .++.+.|+++++..  ++..|---+-..     
T Consensus        86 yg-~~~~~~~~v~~l~~aGa~gv~iED~~~~k~cgH~~~~~k~l~p~~e~~~kI~Aa~~a~~~~~~~i~aRtda~~a~~g  164 (290)
T 2hjp_A           86 FG-NAVNVHYVVPQYEAAGASAIVMEDKTFPKDTSLRTDGRQELVRIEEFQGKIAAATAARADRDFVVIARVEALIAGLG  164 (290)
T ss_dssp             TS-SHHHHHHHHHHHHHHTCSEEEEECBCSSCCC-------CCBCCHHHHHHHHHHHHHHCSSTTSEEEEEECTTTTTCC
T ss_pred             CC-CHHHHHHHHHHHHHhCCeEEEEcCCCCCccccccccCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHhhcccc
Confidence            22 788899999999999999999999973            1444 46677788887763  444444444322     


Q ss_pred             cchHHHHHHHHHHhCCCEE
Q 015894          303 YGQALSNILASLQMGISTV  321 (398)
Q Consensus       303 ~GlA~ANalaAl~aGa~~V  321 (398)
                      .--++.-+.+-.+|||+.|
T Consensus       165 ~~~ai~Ra~ay~eAGAd~i  183 (290)
T 2hjp_A          165 QQEAVRRGQAYEEAGADAI  183 (290)
T ss_dssp             HHHHHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHHHHHcCCcEE
Confidence            3467888889999999955

>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}

Probab=89.79  E-value=4.8  Score=38.49  Aligned_cols=146  Identities=14%  Similarity=0.096  Sum_probs=93.9

Q ss_pred             CcEEEEe-CCHhhHHHHHHcCCCEEEEecc-CchH-HHhhh-cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCC
Q 015894          166 ARFPVLT-PNLKGFEAAVAAGAKEVAIFAS-ASES-FSKSN-INCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPV  241 (398)
Q Consensus       166 ~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~~-~Sd~-~~~~~-~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~  241 (398)
                      -.+.++. .+.-....+.++|++.+.+..+ ++-. +-..- ...|.++.+..++.+.+.+   .+.|.+.      .|.
T Consensus        21 ~~i~~~~a~D~~sA~i~e~aGf~ai~vs~s~~a~~~lG~pD~~~vt~~em~~~~~~I~r~~---~~PviaD------~d~   91 (287)
T 3b8i_A           21 RCYHTASVFDPMSARIAADLGFECGILGGSVASLQVLAAPDFALITLSEFVEQATRIGRVA---RLPVIAD------ADH   91 (287)
T ss_dssp             CCEECEECCSHHHHHHHHHTTCSCEEECHHHHHHHHHSCCSSSCSCHHHHHHHHHHHHTTC---SSCEEEE------CTT
T ss_pred             CcEEEecCCCHHHHHHHHHcCCCEEEeCcHHHHHHhcCCCCCCCCCHHHHHHHHHHHHhcC---CCCEEEE------CCC
Confidence            3444444 3444555667799999888654 3321 11111 2357888888776655533   4455322      233


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCEEEEccCcC----------cCCHHHHHHHHHHHHhhC--CCCeEEEEeCC---ccchH
Q 015894          242 EGMVPPSKVAYVSKQLYDMGCSEISLGDTIG----------VGTPGTVIPMLEAVLDAV--PVDKLAVHFHD---TYGQA  306 (398)
Q Consensus       242 ~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G----------~~~P~~v~~lv~~l~~~~--p~~~l~~H~Hn---d~GlA  306 (398)
                      .+- +++.+.+.++++.++|+..|.|-|..+          +..++++.+.|+++++.-  ++..|---+-.   .+--+
T Consensus        92 Gyg-~~~~~~~~v~~l~~aGa~gv~iED~~~pKrcgh~~gkl~~~~e~~~~I~aa~~a~~~~~~~i~aRtdaa~~gl~~a  170 (287)
T 3b8i_A           92 GYG-NALNVMRTVVELERAGIAALTIEDTLLPAQFGRKSTDLICVEEGVGKIRAALEARVDPALTIIARTNAELIDVDAV  170 (287)
T ss_dssp             CSS-SHHHHHHHHHHHHHHTCSEEEEECBCCSCCTTTCTTCBCCHHHHHHHHHHHHHHCCSTTSEEEEEEETTTSCHHHH
T ss_pred             CCC-CHHHHHHHHHHHHHhCCeEEEEcCCCCccccCCCCCCccCHHHHHHHHHHHHHcCCCCCcEEEEechhhhcCHHHH
Confidence            322 788899999999999999999999874          345567888898888763  44334333322   12248


Q ss_pred             HHHHHHHHHhCCCEE
Q 015894          307 LSNILASLQMGISTV  321 (398)
Q Consensus       307 ~ANalaAl~aGa~~V  321 (398)
                      +.-+.+-.+|||+.|
T Consensus       171 i~Ra~ay~eAGAd~i  185 (287)
T 3b8i_A          171 IQRTLAYQEAGADGI  185 (287)
T ss_dssp             HHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHcCCCEE
Confidence            888889999999955

>3noy_A 4-hydroxy-3-methylbut-2-EN-1-YL diphosphate synth; iron-sulfur protein, non-mevalonate pathway, terpene biosynt isoprenoid biosynthesis; 2.70A {Aquifex aeolicus}

Probab=89.78  E-value=3.9  Score=40.40  Aligned_cols=93  Identities=18%  Similarity=0.281  Sum_probs=68.2

Q ss_pred             CCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          244 MVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       244 r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      ..|.+...+.++++.++||+.|.++    +-. .+-.+.+..+++..+ +||..-.|-|+-+|++    |+++|++-+-.
T Consensus        42 T~D~~atv~Qi~~l~~aG~diVRva----vp~-~~~a~al~~I~~~~~-vPlvaDiHf~~~lal~----a~e~G~dklRI  111 (366)
T 3noy_A           42 THDVEATLNQIKRLYEAGCEIVRVA----VPH-KEDVEALEEIVKKSP-MPVIADIHFAPSYAFL----SMEKGVHGIRI  111 (366)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCEEEEE----CCS-HHHHHHHHHHHHHCS-SCEEEECCSCHHHHHH----HHHTTCSEEEE
T ss_pred             CcCHHHHHHHHHHHHHcCCCEEEeC----CCC-hHHHHHHHHHHhcCC-CCEEEeCCCCHHHHHH----HHHhCCCeEEE
Confidence            4678888888999999999998883    223 344677889998886 6899999999988865    89999997433


Q ss_pred             ccccCCCCCCCCCCCCCccHHHHHHHHHhCCC
Q 015894          324 SVSGLGGCPYAKGASGNVATEDVVYMLNGLGV  355 (398)
Q Consensus       324 Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi  355 (398)
                      -=+=+|.         --..++|+...++.|+
T Consensus       112 NPGNig~---------~~~~~~vv~~ak~~~~  134 (366)
T 3noy_A          112 NPGNIGK---------EEIVREIVEEAKRRGV  134 (366)
T ss_dssp             CHHHHSC---------HHHHHHHHHHHHHHTC
T ss_pred             CCcccCc---------hhHHHHHHHHHHHcCC
Confidence            2222222         2246788888887665

>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}

Probab=89.76  E-value=1.8  Score=44.38  Aligned_cols=69  Identities=14%  Similarity=0.082  Sum_probs=51.3

Q ss_pred             HHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeecc
Q 015894          251 AYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSV  325 (398)
Q Consensus       251 ~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv  325 (398)
                      .+.++.+.++|+|.|.|-=+.  ..+..+.++++.+++.+|+.++..-.    .....-+..+.++||+.|.+..
T Consensus       231 ~~~a~~l~~aG~d~I~id~a~--g~~~~~~~~v~~i~~~~p~~~Vi~g~----v~t~e~a~~l~~aGaD~I~vg~  299 (490)
T 4avf_A          231 GERVAALVAAGVDVVVVDTAH--GHSKGVIERVRWVKQTFPDVQVIGGN----IATAEAAKALAEAGADAVKVGI  299 (490)
T ss_dssp             HHHHHHHHHTTCSEEEEECSC--CSBHHHHHHHHHHHHHCTTSEEEEEE----ECSHHHHHHHHHTTCSEEEECS
T ss_pred             HHHHHHHhhcccceEEecccC--CcchhHHHHHHHHHHHCCCceEEEee----eCcHHHHHHHHHcCCCEEEECC
Confidence            456778888999998884333  35678889999999999887776621    1233557888999999999743

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=89.74  E-value=2.3  Score=43.65  Aligned_cols=70  Identities=16%  Similarity=0.173  Sum_probs=51.4

Q ss_pred             HHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccc
Q 015894          251 AYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVS  326 (398)
Q Consensus       251 ~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~  326 (398)
                      .+.++.+.++|+|.|.|-=+.|  .+..+.++++.+++.+|+.+|.+-.    .....-+..++++||+.|.+...
T Consensus       233 ~~~a~~l~~aG~d~I~id~a~g--~~~~~~~~i~~ir~~~p~~~Vi~g~----v~t~e~a~~l~~aGaD~I~Vg~g  302 (496)
T 4fxs_A          233 EERVKALVEAGVDVLLIDSSHG--HSEGVLQRIRETRAAYPHLEIIGGN----VATAEGARALIEAGVSAVKVGIG  302 (496)
T ss_dssp             HHHHHHHHHTTCSEEEEECSCT--TSHHHHHHHHHHHHHCTTCCEEEEE----ECSHHHHHHHHHHTCSEEEECSS
T ss_pred             HHHHHHHHhccCceEEeccccc--cchHHHHHHHHHHHHCCCceEEEcc----cCcHHHHHHHHHhCCCEEEECCC
Confidence            3557778889999887754433  4577889999999999887776621    12335567888999999987654

>2r14_A Morphinone reductase; H-tunnelling, flavoprotein, NADH, hydride transfer, oxidoreductase; HET: FMN TXD; 1.40A {Pseudomonas putida} PDB: 3gx9_A* 1gwj_A*

Probab=89.71  E-value=4.5  Score=40.03  Aligned_cols=118  Identities=12%  Similarity=0.117  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCcEEEEEeeeecC---------------CCC--------------------CCCCH-----
Q 015894          208 IEDSLIRYRDVALAARELSIPVRGYLSCVVGC---------------PVE--------------------GMVPP-----  247 (398)
Q Consensus       208 ~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~---------------~~~--------------------~r~~~-----  247 (398)
                      .++.++..+.+++.+++.|-.+.+.|... |-               |-.                    ....|     
T Consensus        80 ~d~~i~~~k~l~~avh~~G~~i~~QL~H~-Gr~~~~~~~~~~~~~~apS~i~~~~~~~~~~~~~~~~~~~~~~~p~~mt~  158 (377)
T 2r14_A           80 TDAQEAGWKGVVEAVHAKGGRIALQLWHV-GRVSHELVQPDGQQPVAPSALKAEGAECFVEFEDGTAGLHPTSTPRALET  158 (377)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCCEEEEEECC-TTSCCTTTSGGGCCCEESSSCCCTTCEEEEECTTSCEEEEECCCCEECCG
T ss_pred             CHHHHHHHHHHHHHHhhcCCeEEEEccCC-ccccccccccCCCcccCCCcccccccccccccccccccccCCCCCccCCH
Confidence            45667778888888899998887777652 10               000                    00123     


Q ss_pred             -------HHHHHHHHHHHhCCCCEEEE-------------------ccCcCcCC---HHHHHHHHHHHHhhCCCCeEEEE
Q 015894          248 -------SKVAYVSKQLYDMGCSEISL-------------------GDTIGVGT---PGTVIPMLEAVLDAVPVDKLAVH  298 (398)
Q Consensus       248 -------~~l~~~a~~l~~~Gad~I~L-------------------~DT~G~~~---P~~v~~lv~~l~~~~p~~~l~~H  298 (398)
                             +.+.+.|+.+.++|+|.|-|                   .|-.|...   +.-+.++++++|+.++..+|++-
T Consensus       159 ~eI~~~i~~f~~aA~~a~~aGfDgVEIh~a~GYLl~QFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~v~vr  238 (377)
T 2r14_A          159 DEIPGIVEDYRQAAQRAKRAGFDMVEVHAANACLPNQFLATGTNRRTDQYGGSIENRARFPLEVVDAVAEVFGPERVGIR  238 (377)
T ss_dssp             GGHHHHHHHHHHHHHHHHHHTCSEEEEEECTTCHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCEEEEcCcccchHHhccCCccccCCCccCcchhhchHHHHHHHHHHHHHcCCCcEEEE
Confidence                   56777788888999998877                   25555433   34477889999998863278876


Q ss_pred             eCCc-------cch----HHHHHHHHHHhCCCEEeeccc
Q 015894          299 FHDT-------YGQ----ALSNILASLQMGISTVDSSVS  326 (398)
Q Consensus       299 ~Hnd-------~Gl----A~ANalaAl~aGa~~VD~Sv~  326 (398)
                      ..-+       .|.    ++.-+.+.-++|++.|+++..
T Consensus       239 ls~~~~~~~~~~~~~~~~~~~la~~le~~Gvd~i~v~~~  277 (377)
T 2r14_A          239 LTPFLELFGLTDDEPEAMAFYLAGELDRRGLAYLHFNEP  277 (377)
T ss_dssp             ECTTCCCTTCCCSCHHHHHHHHHHHHHHTTCSEEEEECC
T ss_pred             eccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCC
Confidence            5321       122    333344555799999999764

>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}

Probab=89.63  E-value=3.8  Score=38.99  Aligned_cols=78  Identities=12%  Similarity=-0.039  Sum_probs=40.3

Q ss_pred             HHHHHHHHhCCCcEEEEEeeeecCCCCCC-CCHHHHHHHHHHHHhC----CCCEE--EEccCcCc-CCHHHHHHHHHHHH
Q 015894          216 RDVALAARELSIPVRGYLSCVVGCPVEGM-VPPSKVAYVSKQLYDM----GCSEI--SLGDTIGV-GTPGTVIPMLEAVL  287 (398)
Q Consensus       216 ~~~v~~ak~~G~~v~~~l~~~fg~~~~~r-~~~~~l~~~a~~l~~~----Gad~I--~L~DT~G~-~~P~~v~~lv~~l~  287 (398)
                      .+.++.|++.|.....     ...|.-.+ .+.+.+.+..+.+.+.    +...+  .++...|. ++|+.+.++.+   
T Consensus        88 i~la~~A~~~Gadavl-----v~~P~y~~~~s~~~l~~~f~~va~a~p~~~lPiilYn~P~~tg~~l~~~~~~~La~---  159 (294)
T 3b4u_A           88 ADQSAEALNAGARNIL-----LAPPSYFKNVSDDGLFAWFSAVFSKIGKDARDILVYNIPSVTMVTLSVELVGRLKA---  159 (294)
T ss_dssp             HHHHHHHHHTTCSEEE-----ECCCCSSCSCCHHHHHHHHHHHHHHHCTTCCCEEEEECHHHHSCCCCHHHHHHHHH---
T ss_pred             HHHHHHHHhcCCCEEE-----EcCCcCCCCCCHHHHHHHHHHHHHhcCCCCCcEEEEECcchhCcCCCHHHHHHHHH---
Confidence            3445677777776431     11344445 5666666666655543    44432  34555664 55565555532   


Q ss_pred             hhCCC-CeEEE-EeCCcc
Q 015894          288 DAVPV-DKLAV-HFHDTY  303 (398)
Q Consensus       288 ~~~p~-~~l~~-H~Hnd~  303 (398)
                       ..|+ + +++ ....|.
T Consensus       160 -~~pn~i-vgiKds~gd~  175 (294)
T 3b4u_A          160 -AFPGIV-TGVKDSSGNW  175 (294)
T ss_dssp             -HCTTTE-EEEEECCCCH
T ss_pred             -hCCCcE-EEEEECCCCH
Confidence             2465 3 555 444443

>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}

Probab=89.61  E-value=0.79  Score=42.99  Aligned_cols=76  Identities=17%  Similarity=0.116  Sum_probs=53.7

Q ss_pred             CCHHHHHHHHHHHHhCCCCE--EEEccCcCcCCHHH--HHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCE
Q 015894          245 VPPSKVAYVSKQLYDMGCSE--ISLGDTIGVGTPGT--VIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGIST  320 (398)
Q Consensus       245 ~~~~~l~~~a~~l~~~Gad~--I~L~DT~G~~~P~~--v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~  320 (398)
                      .|...+.+-++.+.+.|+++  +-+.|  |...|.-  =.++++.+|+..|+.++.+|.+-+.--..  .-.+.++||++
T Consensus        37 aD~~~L~~~i~~l~~~G~d~lHvDVmD--g~FVpnit~G~~~v~~lr~~~p~~~ldvHLmv~~p~~~--i~~~~~aGAd~  112 (246)
T 3inp_A           37 ADLARLGDDVKAVLAAGADNIHFDVMD--NHYVPNLTFGPMVLKALRDYGITAGMDVHLMVKPVDAL--IESFAKAGATS  112 (246)
T ss_dssp             SCGGGHHHHHHHHHHTTCCCEEEEEEB--SSSSSCBCCCHHHHHHHHHHTCCSCEEEEEECSSCHHH--HHHHHHHTCSE
T ss_pred             CChhhHHHHHHHHHHcCCCEEEEEecC--CCcCcchhcCHHHHHHHHHhCCCCeEEEEEeeCCHHHH--HHHHHHcCCCE
Confidence            45667788888899999995  55566  6655422  12678888988888899999994433222  34467899998


Q ss_pred             Eeec
Q 015894          321 VDSS  324 (398)
Q Consensus       321 VD~S  324 (398)
                      |..-
T Consensus       113 itvH  116 (246)
T 3inp_A          113 IVFH  116 (246)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            8765

>3fa4_A 2,3-dimethylmalate lyase; alpha/beta barrel, helix swapping; 2.18A {Aspergillus niger} PDB: 3fa3_A

Probab=89.60  E-value=8.1  Score=37.23  Aligned_cols=149  Identities=15%  Similarity=0.140  Sum_probs=90.7

Q ss_pred             cCCcEEEEe-CCHhhHHHHHHcCCCEEEEe-ccCchH-HHhhh-cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecC
Q 015894          164 EGARFPVLT-PNLKGFEAAVAAGAKEVAIF-ASASES-FSKSN-INCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGC  239 (398)
Q Consensus       164 ~~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~-~~~Sd~-~~~~~-~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~  239 (398)
                      ++..+.++. .+.-....+.++|++.+.+. .+++-. +-..- ...|.++.+.+++.+.+.+.  .+.|.+.+      
T Consensus        16 ~~~~i~~~~a~D~~sA~l~e~aGf~ai~vsG~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~--~~PviaD~------   87 (302)
T 3fa4_A           16 PDSFIVAPGVYDGLSARVALSAGFDALYMTGAGTAASVHGQADLGICTLNDMRANAEMISNISP--STPVIADA------   87 (302)
T ss_dssp             TTCCEEEEEECSHHHHHHHHTTTCSCEEECHHHHHHHHHSCCSSSCCCHHHHHHHHHHHHTTST--TSCEEEEC------
T ss_pred             CCCeEEEecCcCHHHHHHHHHcCCCEEEeCcHHHHHHHcCCCCCCcCCHHHHHHHHHHHHhhcc--CCCEEEEC------
Confidence            334444443 45545556677899988873 333322 11111 23577888877755544322  45554322      


Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcC-----------cCCHHHHHHHHHHHHhh----CCCCeEEEEeC----
Q 015894          240 PVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIG-----------VGTPGTVIPMLEAVLDA----VPVDKLAVHFH----  300 (398)
Q Consensus       240 ~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G-----------~~~P~~v~~lv~~l~~~----~p~~~l~~H~H----  300 (398)
                      |.. -.+++.+.+.++.+.++|+..|.|-|.++           +..+++..+.|++.++.    -|+.-|-.-+-    
T Consensus        88 d~G-yg~~~~v~~tv~~l~~aGaagv~iEDq~~~Krcgh~~gk~l~~~~e~~~rI~Aa~~A~~~~~~d~~I~ARTDa~~~  166 (302)
T 3fa4_A           88 DTG-YGGPIMVARTTEQYSRSGVAAFHIEDQVQTKRCGHLAGKILVDTDTYVTRIRAAVQARQRIGSDIVVIARTDSLQT  166 (302)
T ss_dssp             TTT-TSSHHHHHHHHHHHHHTTCCEEEECSBCCC-------CCCBCCHHHHHHHHHHHHHHHHHHTCCCEEEEEECCHHH
T ss_pred             CCC-CCCHHHHHHHHHHHHHcCCcEEEECCCCCCcccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCEEEEEEeccccc
Confidence            222 23677888899999999999999999985           23456666667766643    24433333332    


Q ss_pred             CccchHHHHHHHHHHhCCCEE
Q 015894          301 DTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       301 nd~GlA~ANalaAl~aGa~~V  321 (398)
                      ..+.-|+.-+.+..+||||.|
T Consensus       167 ~gldeAi~Ra~ay~eAGAD~i  187 (302)
T 3fa4_A          167 HGYEESVARLRAARDAGADVG  187 (302)
T ss_dssp             HCHHHHHHHHHHHHTTTCSEE
T ss_pred             CCHHHHHHHHHHHHHcCCCEE
Confidence            223447888888899999966

>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A

Probab=89.54  E-value=1.9  Score=41.48  Aligned_cols=82  Identities=13%  Similarity=0.072  Sum_probs=70.9

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcCc---CCHHHHHHHHHHHHhhCC-CCeEEEEe-CCccchHHHHHHHHHHhC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGV---GTPGTVIPMLEAVLDAVP-VDKLAVHF-HDTYGQALSNILASLQMG  317 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p-~~~l~~H~-Hnd~GlA~ANalaAl~aG  317 (398)
                      +..|.+.+.++++.+.+.|++.|.++-|.|=   ++.++-.++++.+.+... .+++-+|. +|+..-++..+..|-++|
T Consensus        30 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~G  109 (307)
T 3s5o_A           30 AEVDYGKLEENLHKLGTFPFRGFVVQGSNGEFPFLTSSERLEVVSRVRQAMPKNRLLLAGSGCESTQATVEMTVSMAQVG  109 (307)
T ss_dssp             SCBCHHHHHHHHHHHTTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHTSCTTSEEEEECCCSSHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHcCCCCcEEEecCCCCHHHHHHHHHHHHHcC
Confidence            5789999999999999999999999999995   778888899999988764 56777765 688999999999999999


Q ss_pred             CCEEeec
Q 015894          318 ISTVDSS  324 (398)
Q Consensus       318 a~~VD~S  324 (398)
                      |+.+=+.
T Consensus       110 adavlv~  116 (307)
T 3s5o_A          110 ADAAMVV  116 (307)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEc
Confidence            9977653

>1bxb_A Xylose isomerase; xylose metabolism; 2.20A {Thermus thermophilus} SCOP: c.1.15.3 PDB: 1bxc_A

Probab=89.51  E-value=2.9  Score=41.01  Aligned_cols=121  Identities=11%  Similarity=-0.008  Sum_probs=59.1

Q ss_pred             HHHHHHcCCCEEEEeccCc--hHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCC--CCCCCCHHHHHHH
Q 015894          178 FEAAVAAGAKEVAIFASAS--ESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCP--VEGMVPPSKVAYV  253 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~S--d~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~--~~~r~~~~~l~~~  253 (398)
                      ++.|.+.|++.|.+..+..  +..........++...+.+.++.++|++.|..++..+...-..|  ...-.+++.+.++
T Consensus       122 i~~A~~LGa~~vv~~~G~~g~~~~~~~~~~~~~~~~~e~L~~l~~~a~~~g~gv~l~lE~~~~~~~~~~~~~t~~~~~~l  201 (387)
T 1bxb_A          122 MDLGAELGAEIYVVWPGREGAEVEATGKARKVWDWVREALNFMAAYAEDQGYGYRFALEPKPNEPRGDIYFATVGSMLAF  201 (387)
T ss_dssp             HHHHHHHTCCEEEECCTTCEESCGGGCGGGTHHHHHHHHHHHHHHHHHHHTCCCEEEECCCSSSSSSEESSCSHHHHHHH
T ss_pred             HHHHHHhCCCEEEECCCCCCccCCccCCHHHHHHHHHHHHHHHHHHHHHhCCCcEEEEecCCCCCCCCccCCCHHHHHHH
Confidence            4566778999987754311  00001111223456777788888999988433332333211001  0112355555554


Q ss_pred             HHHHHhCCCCE-EE-EccCcCcCCH--HHHHHHHHHHHhhCCCCeEEEEeCCccc
Q 015894          254 SKQLYDMGCSE-IS-LGDTIGVGTP--GTVIPMLEAVLDAVPVDKLAVHFHDTYG  304 (398)
Q Consensus       254 a~~l~~~Gad~-I~-L~DT~G~~~P--~~v~~lv~~l~~~~p~~~l~~H~Hnd~G  304 (398)
                      +   .+.|.+. +. .-|+. .+..  ..+.+.++.+.. .+ .-.++|++|..+
T Consensus       202 l---~~v~~~~~vgl~lD~g-H~~~~g~d~~~~l~~~~~-~~-~i~~vHl~D~~~  250 (387)
T 1bxb_A          202 I---HTLDRPERFGLNPEFA-HETMAGLNFVHAVAQALD-AG-KLFHIDLNDQRM  250 (387)
T ss_dssp             H---TTSSSGGGEEECCBHH-HHHHTTCCHHHHHHHHHH-TT-CBCCEECCBCCS
T ss_pred             H---HHcCCccceEEEEecC-cccccCCCHHHHHHHhcc-CC-cEEEEEeCCCCC
Confidence            4   4456543 33 34652 2211  233444554441 12 237889998754

>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*

Probab=89.50  E-value=6.2  Score=37.62  Aligned_cols=15  Identities=7%  Similarity=0.080  Sum_probs=9.7

Q ss_pred             CCCccHHHHHHHHHh
Q 015894          338 SGNVATEDVVYMLNG  352 (398)
Q Consensus       338 aGNa~lE~vv~~L~~  352 (398)
                      ++|..-+.++...+.
T Consensus       213 ~~n~~P~~~~~l~~a  227 (301)
T 3m5v_A          213 TSNLLPDMISALTHF  227 (301)
T ss_dssp             GGGTCHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHH
Confidence            567777777666653

>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A*

Probab=89.48  E-value=1.5  Score=41.93  Aligned_cols=82  Identities=16%  Similarity=0.077  Sum_probs=70.0

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcCc---CCHHHHHHHHHHHHhhCC--CCeEEEEe-CCccchHHHHHHHHHHh
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGV---GTPGTVIPMLEAVLDAVP--VDKLAVHF-HDTYGQALSNILASLQM  316 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p--~~~l~~H~-Hnd~GlA~ANalaAl~a  316 (398)
                      +..|.+.+.++++.+.+.|++.|.++-|.|-   +++++-.++++.+.+...  .+++-+|. +|+..-++..+..|-++
T Consensus        23 g~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g~rvpviaGvg~~~t~~ai~la~~a~~~  102 (301)
T 3m5v_A           23 GKVDEQSYARLIKRQIENGIDAVVPVGTTGESATLTHEEHRTCIEIAVETCKGTKVKVLAGAGSNATHEAVGLAKFAKEH  102 (301)
T ss_dssp             TEECHHHHHHHHHHHHHTTCCEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEEECCCSSHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCCeEEEeCCCCCHHHHHHHHHHHHHc
Confidence            5689999999999999999999999999995   577888888888887764  36777765 68899999999999999


Q ss_pred             CCCEEeec
Q 015894          317 GISTVDSS  324 (398)
Q Consensus       317 Ga~~VD~S  324 (398)
                      ||+.+=+.
T Consensus       103 Gadavlv~  110 (301)
T 3m5v_A          103 GADGILSV  110 (301)
T ss_dssp             TCSEEEEE
T ss_pred             CCCEEEEc
Confidence            99977654

>2gou_A Oxidoreductase, FMN-binding; OLD yeallow enzyme, flavoenzyme; HET: BOG FMN PE4; 1.40A {Shewanella oneidensis} PDB: 2gq8_A* 2gq9_A* 2gqa_A*

Probab=89.48  E-value=4.4  Score=39.85  Aligned_cols=121  Identities=14%  Similarity=0.130  Sum_probs=77.5

Q ss_pred             CHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecC--------------CC-----C---------------CCCCH-----
Q 015894          207 TIEDSLIRYRDVALAARELSIPVRGYLSCVVGC--------------PV-----E---------------GMVPP-----  247 (398)
Q Consensus       207 s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~--------------~~-----~---------------~r~~~-----  247 (398)
                      ..++.++..+.+++.+++.|-.+.+.|... |-              |-     .               ....|     
T Consensus        75 ~~d~~i~~~~~l~~~vh~~g~~i~~QL~H~-Gr~~~~~~~~g~~~~apS~i~~~~~~~~~~~~~g~~~~~~~~~p~~mt~  153 (365)
T 2gou_A           75 YTPEQIAGWRIVTEAVHAKGCAIFAQLWHV-GRVTHPDNIDGQQPISSSTLKAENVKVFVDNGSDEPGFVDVAVPRAMTK  153 (365)
T ss_dssp             SSHHHHHHHHHHHHHHHHHSCEEEEEEECC-TTSSCGGGTTTCCCEESSSCCCTTCEEEECCSSSSCEEEECCCCEECCH
T ss_pred             CCHHHHHHHHHHHHHHHhcCCeEEEEeecC-CCcccccccCCCCccCCCCccccccccccccccccccccCCCCCCcCCH
Confidence            345667778888888889998887777641 10              00     0               00123     


Q ss_pred             -------HHHHHHHHHHHhCCCCEEEE-------------------ccCcCcCC---HHHHHHHHHHHHhhCCCCeEEEE
Q 015894          248 -------SKVAYVSKQLYDMGCSEISL-------------------GDTIGVGT---PGTVIPMLEAVLDAVPVDKLAVH  298 (398)
Q Consensus       248 -------~~l~~~a~~l~~~Gad~I~L-------------------~DT~G~~~---P~~v~~lv~~l~~~~p~~~l~~H  298 (398)
                             +.+.+.++.+.++|+|.|-|                   .|-.|...   +.-+.++++++|+.++..+|++-
T Consensus       154 ~eI~~~i~~f~~aA~~a~~aGfDgVeih~a~gYLl~qFlsp~~N~R~D~yGGslenr~r~~~eiv~avr~~vg~~pv~vr  233 (365)
T 2gou_A          154 ADIAQVIADYRQAALNAMEAGFDGIELHAANGYLINQFIDSEANNRSDEYGGSLENRLRFLDEVVAALVDAIGAERVGVR  233 (365)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSGGGCCCCSTTSSSHHHHTHHHHHHHHHHHHHHCGGGEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCCEEEEecccchhHhhccCCCccCcCcccCcchhhhHHHHHHHHHHHHHHcCCCcEEEE
Confidence                   56777788888999999888                   34444432   34577889999998852278884


Q ss_pred             eCCc-------cc----hHHHHHHHHHHhCCCEEeeccccC
Q 015894          299 FHDT-------YG----QALSNILASLQMGISTVDSSVSGL  328 (398)
Q Consensus       299 ~Hnd-------~G----lA~ANalaAl~aGa~~VD~Sv~Gl  328 (398)
                      ..-+       .|    .++.-+.++.++|++.|+++-..+
T Consensus       234 is~~~~~~~~~~~~~~~~~~~~a~~l~~~G~d~i~v~~~~~  274 (365)
T 2gou_A          234 LAPLTTLNGTVDADPILTYTAAAALLNKHRIVYLHIAEVDW  274 (365)
T ss_dssp             ECSSCCTTSCCCSSHHHHHHHHHHHHHHTTCSEEEEECCBT
T ss_pred             EccccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCc
Confidence            4321       12    233335555679999999986443

>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}

Probab=89.45  E-value=3.1  Score=42.71  Aligned_cols=129  Identities=19%  Similarity=0.164  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEE-EeCCHhhHHHHHHcCCCEEEEecc-Cc
Q 015894          120 VKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPV-LTPNLKGFEAAVAAGAKEVAIFAS-AS  196 (398)
Q Consensus       120 ~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~-l~~n~~~ie~a~~~Gv~~v~i~~~-~S  196 (398)
                      +-.+.++.|.++|++.|++..-. +.    .....+.++.++ ..|+..+.+ -+.+.++.+.+.++|+|.|.+... .+
T Consensus       231 d~~~~a~~l~~aG~d~I~id~a~-g~----~~~~~~~i~~ir~~~p~~~Vi~g~v~t~e~a~~l~~aGaD~I~Vg~g~Gs  305 (496)
T 4fxs_A          231 GNEERVKALVEAGVDVLLIDSSH-GH----SEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGS  305 (496)
T ss_dssp             CCHHHHHHHHHTTCSEEEEECSC-TT----SHHHHHHHHHHHHHCTTCCEEEEEECSHHHHHHHHHHTCSEEEECSSCCT
T ss_pred             chHHHHHHHHhccCceEEecccc-cc----chHHHHHHHHHHHHCCCceEEEcccCcHHHHHHHHHhCCCEEEECCCCCc
Confidence            34677889999999999998642 11    011224444555 345655544 346778899999999999987421 11


Q ss_pred             hH--HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcc
Q 015894          197 ES--FSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGD  269 (398)
Q Consensus       197 d~--~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~D  269 (398)
                      ..  ......+..   .+..+.++++.+++.+++|.+         +.+-.+++.+.+.    .++||+.+.+.-
T Consensus       306 ~~~tr~~~g~g~p---~~~~i~~v~~~~~~~~iPVIa---------~GGI~~~~di~ka----la~GAd~V~iGs  364 (496)
T 4fxs_A          306 ICTTRIVTGVGVP---QITAIADAAGVANEYGIPVIA---------DGGIRFSGDISKA----IAAGASCVMVGS  364 (496)
T ss_dssp             TBCHHHHHCCCCC---HHHHHHHHHHHHGGGTCCEEE---------ESCCCSHHHHHHH----HHTTCSEEEEST
T ss_pred             CcccccccCCCcc---HHHHHHHHHHHhccCCCeEEE---------eCCCCCHHHHHHH----HHcCCCeEEecH
Confidence            10  111112222   345556777777788887742         2344556665443    357999888764

>2ze3_A DFA0005; organic waste LEFT-OVER decomposition, alkaliphilic, ICL/PEPM superfamily, alpha-ketoglutarate LIG isomerase; HET: AKG; 1.65A {Deinococcus ficus}

Probab=89.40  E-value=5  Score=38.08  Aligned_cols=201  Identities=14%  Similarity=0.095  Sum_probs=121.9

Q ss_pred             HHHHHHhcCCCEEEEecC-C-----CCCcccCCCCHHHHHHHHHhcc-CCcEEEEe--C-----CH----hhHHHHHHcC
Q 015894          124 LIKLLVSSGLAVVEATSF-V-----SPKWVPQLADAKDVMAAIQNVE-GARFPVLT--P-----NL----KGFEAAVAAG  185 (398)
Q Consensus       124 ia~~L~~aGv~~IEvG~~-~-----~~~~~p~~~D~~~v~~~i~~~~-~~~l~~l~--~-----n~----~~ie~a~~~G  185 (398)
                      -++.++++|++.|=+|.. +     .|+..  .-+.++++..++.+. .+.+.+++  +     +.    +-+++..++|
T Consensus        28 sA~~~~~aG~~ai~vsg~s~a~~~G~pD~~--~vt~~em~~~~~~I~~~~~~pviaD~d~Gyg~~~~~~~~~v~~l~~aG  105 (275)
T 2ze3_A           28 SARLLEAAGFTAIGTTSAGIAHARGRTDGQ--TLTRDEMGREVEAIVRAVAIPVNADIEAGYGHAPEDVRRTVEHFAALG  105 (275)
T ss_dssp             HHHHHHHHTCSCEEECHHHHHHHSCCCSSS--SSCHHHHHHHHHHHHHHCSSCEEEECTTCSSSSHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCEEEECcHHHHHhCCCCCCC--CCCHHHHHHHHHHHHhhcCCCEEeecCCCCCCCHHHHHHHHHHHHHcC
Confidence            356778899999999842 1     23321  235677776666432 12223333  2     22    2345667899


Q ss_pred             CCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCC--------CHHHHHHHHHHH
Q 015894          186 AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMV--------PPSKVAYVSKQL  257 (398)
Q Consensus       186 v~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~--------~~~~l~~~a~~l  257 (398)
                      +.-|+|-..+..   ..+-=.+.++..++++.+++.+++.|.++.+  ..   --++...        ..+...+-++.+
T Consensus       106 aagv~iED~~~~---~~k~l~~~~e~~~~I~aa~~a~~~~g~~~~i--~a---Rtda~~~~~g~~~~~~~~~ai~Ra~ay  177 (275)
T 2ze3_A          106 VAGVNLEDATGL---TPTELYDLDSQLRRIEAARAAIDASGVPVFL--NA---RTDTFLKGHGATDEERLAETVRRGQAY  177 (275)
T ss_dssp             CSEEEEECBCSS---SSSCBCCHHHHHHHHHHHHHHHHHHTSCCEE--EE---ECCTTTTTCSSSHHHHHHHHHHHHHHH
T ss_pred             CcEEEECCCcCC---CCCccCCHHHHHHHHHHHHHhHhhcCCCeEE--EE---echhhhccccccchhhHHHHHHHHHHH
Confidence            999999888642   1122247888889988888877776876431  10   0011000        246666677788


Q ss_pred             HhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCC
Q 015894          258 YDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGA  337 (398)
Q Consensus       258 ~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~gr  337 (398)
                      .++|||.|.+.=   .-+++.+.++.+.+    + .|+-+-+..  ++  ...-.--++|+++|-....++        |
T Consensus       178 ~eAGAd~i~~e~---~~~~~~~~~i~~~~----~-~P~n~~~~~--~~--~~~~eL~~lGv~~v~~~~~~~--------r  237 (275)
T 2ze3_A          178 ADAGADGIFVPL---ALQSQDIRALADAL----R-VPLNVMAFP--GS--PVPRALLDAGAARVSFGQSLM--------L  237 (275)
T ss_dssp             HHTTCSEEECTT---CCCHHHHHHHHHHC----S-SCEEEECCT--TS--CCHHHHHHTTCSEEECTTHHH--------H
T ss_pred             HHCCCCEEEECC---CCCHHHHHHHHHhc----C-CCEEEecCC--CC--CCHHHHHHcCCcEEEEChHHH--------H
Confidence            889999998853   33456666655554    3 234333321  22  223444578999998766655        5


Q ss_pred             CCCccHHHHHHHHHhCC
Q 015894          338 SGNVATEDVVYMLNGLG  354 (398)
Q Consensus       338 aGNa~lE~vv~~L~~~G  354 (398)
                      +-+.++++++..+.+.|
T Consensus       238 aa~~a~~~~~~~i~~~g  254 (275)
T 2ze3_A          238 ATLGLVQRMAAELHAAE  254 (275)
T ss_dssp             HHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHhC
Confidence            66788888888888767

>3iar_A Adenosine deaminase; purine metabolism structural genomics, structural genomics consortium, SGC, D mutation, hereditary hemolytic anemia, hydrolase; HET: 3D1; 1.52A {Homo sapiens} SCOP: c.1.9.1 PDB: 2bgn_E* 1w1i_E* 1qxl_A* 1krm_A* 1vfl_A 1ndv_A* 1ndy_A* 1ndz_A* 1o5r_A* 1uml_A* 1v79_A* 1v7a_A* 1ndw_A 1wxy_A* 1wxz_A* 2e1w_A* 2z7g_A* 2ada_A* 3mvi_A 1a4l_A* ...

Probab=89.38  E-value=12  Score=36.87  Aligned_cols=132  Identities=11%  Similarity=0.097  Sum_probs=80.2

Q ss_pred             HHHHHcCCCEEEEeccCchHHHh-h----------hcCCCHHHHHHHHHHHHHHHH-hCCCcEEEEEeeeecCCCCCCCC
Q 015894          179 EAAVAAGAKEVAIFASASESFSK-S----------NINCTIEDSLIRYRDVALAAR-ELSIPVRGYLSCVVGCPVEGMVP  246 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~~Sd~~~~-~----------~~~~s~~~~l~~~~~~v~~ak-~~G~~v~~~l~~~fg~~~~~r~~  246 (398)
                      +.+.+-|+..+-+..+  +.... .          .-+.+.++.++.+.+.++.++ +.|+.++.-+++.       |..
T Consensus        85 ed~a~dgV~Y~Eir~~--P~~~~~~~~~~~~~~~~~~gl~~~~vv~~v~~~~~~a~~~~gi~~~lI~~~~-------R~~  155 (367)
T 3iar_A           85 EMKAKEGVVYVEVRYS--PHLLANSKVEPIPWNQAEGDLTPDEVVALVGQGLQEGERDFGVKARSILCCM-------RHQ  155 (367)
T ss_dssp             HHHHTTTEEEEEEEEC--GGGGCSSSCSSCGGGCCCCSCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEEE-------TTC
T ss_pred             HHHHHcCCEEEEEEec--HHHhhhccccccccccccCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEEEeC-------CCC
Confidence            3445668776666543  22211 1          127899999999888888775 4699887545432       112


Q ss_pred             HHHHHHHHHHHHhC---CCCEEEEccCcCcCCH---HHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHH-hCCC
Q 015894          247 PSKVAYVSKQLYDM---GCSEISLGDTIGVGTP---GTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQ-MGIS  319 (398)
Q Consensus       247 ~~~l~~~a~~l~~~---Gad~I~L~DT~G~~~P---~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~-aGa~  319 (398)
                      ++...+.++.+.++   |+-.|-|+-.-....|   ....+.++..++.  ++++.+|+..+.+.  .+...|+. .|++
T Consensus       156 ~~~a~e~~~la~~~~~~~vvG~dL~g~E~~~~~~~~~~f~~~f~~A~~~--gl~~~~HagE~~~~--~~i~~al~~lg~~  231 (367)
T 3iar_A          156 PNWSPKVVELCKKYQQQTVVAIDLAGDETIPGSSLLPGHVQAYQEAVKS--GIHRTVHAGEVGSA--EVVKEAVDILKTE  231 (367)
T ss_dssp             GGGHHHHHHHHHHTTTTTEEEEEEESCTTSTTGGGCHHHHHHHHHHHHH--TCEEEEEESSSSCH--HHHHHHHHTSCCS
T ss_pred             CHHHHHHHHHHHhhCCCCEEEEcCCCcccCCCcchHHHHHHHHHHHHHc--CCeeEEecCCcCCh--HHHHHHHHccCCc
Confidence            22234445544444   4444555432233444   5677777776653  46799999887764  56778885 8998


Q ss_pred             EEee
Q 015894          320 TVDS  323 (398)
Q Consensus       320 ~VD~  323 (398)
                      +|+=
T Consensus       232 RIgH  235 (367)
T 3iar_A          232 RLGH  235 (367)
T ss_dssp             EEEE
T ss_pred             eeee
Confidence            8743

>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A

Probab=89.35  E-value=5.6  Score=37.99  Aligned_cols=14  Identities=7%  Similarity=-0.080  Sum_probs=8.6

Q ss_pred             CCCccHHHHHHHHH
Q 015894          338 SGNVATEDVVYMLN  351 (398)
Q Consensus       338 aGNa~lE~vv~~L~  351 (398)
                      .+|..-+.++...+
T Consensus       216 ~an~~P~~~~~l~~  229 (303)
T 2wkj_A          216 TYNIMGWRYQGIVK  229 (303)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHH
Confidence            55666666666554

>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1

Probab=89.24  E-value=6.1  Score=36.76  Aligned_cols=169  Identities=12%  Similarity=0.027  Sum_probs=85.1

Q ss_pred             HHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCCHhhHHHHHHcCCCEEEEeccCchHHHh
Q 015894          122 VELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSK  201 (398)
Q Consensus       122 ~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~  201 (398)
                      .++++.|.++|.|.||+|.-..   + ...+..++++.+|+ .++.+..+......+    +.|+|.+-+..-.++-.. 
T Consensus        23 ~~~~~~l~~~GaD~ielG~S~G---v-t~~~~~~~v~~ir~-~~~Pivlm~y~~n~i----~~G~dg~iiPdLp~ee~~-   92 (240)
T 1viz_A           23 DEQLEILCESGTDAVIIGGSDG---V-TEDNVLRMMSKVRR-FLVPCVLEVSAIEAI----VPGFDLYFIPSVLNSKNA-   92 (240)
T ss_dssp             HHHHHHHHTSCCSEEEECC--------CHHHHHHHHHHHTT-SSSCEEEECSCGGGC----CSCCSEEEEEEETTBSSG-
T ss_pred             HHHHHHHHHcCCCEEEECCCCC---C-CHHHHHHHHHHhhC-cCCCEEEecCccccc----cCCCCEEEEcccCcccCh-
Confidence            5568999999999999997211   1 01112334444444 455555454432322    679997766433222100 


Q ss_pred             hhcCCCHHHHHHHHHHHHHHHHhCC-----CcEE--EEEeeeecCCCCC--C-------CCHHHHHHHHHHHHhCCCCEE
Q 015894          202 SNINCTIEDSLIRYRDVALAARELS-----IPVR--GYLSCVVGCPVEG--M-------VPPSKVAYVSKQLYDMGCSEI  265 (398)
Q Consensus       202 ~~~~~s~~~~l~~~~~~v~~ak~~G-----~~v~--~~l~~~fg~~~~~--r-------~~~~~l~~~a~~l~~~Gad~I  265 (398)
                              +.+  +..-+..++++|     +.+.  +|+..   .|...  |       .+++.+..+++.....+-..|
T Consensus        93 --------~~~--~g~~~~a~~~~g~~~~~l~~i~~gy~l~---~P~~~~~rl~~~d~~~~~~~~~~~a~~g~~~~~~~V  159 (240)
T 1viz_A           93 --------DWI--VGMHQKAMKEYGELMSMEEIVAEGYCIA---NPDCKAAALTEADADLNMDDIVAYARVSELLQLPIF  159 (240)
T ss_dssp             --------GGT--THHHHHHHHHCHHHHHHSCEEEEEEEEC---CTTSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCSEE
T ss_pred             --------hhh--cchhHHHHHHcCCCCcceeeeecccEEE---CCCCceEEeeccCCCCCHHHHHHHHHhCcccCCCEE
Confidence                    000  011134567878     6543  45442   23321  0       345555555544433445677


Q ss_pred             EEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894          266 SLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       266 ~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                      ++.- .|.   ....++++.+++..+.+|+.+=+    |.........+..||+.|
T Consensus       160 Yl~s-~G~---~~~~~~i~~i~~~~~~~Pv~vGg----GI~t~e~a~~~~~gAd~V  207 (240)
T 1viz_A          160 YLEY-SGV---LGDIEAVKKTKAVLETSTLFYGG----GIKDAETAKQYAEHADVI  207 (240)
T ss_dssp             EEEC-TTS---CCCHHHHHHHHHTCSSSEEEEES----SCCSHHHHHHHHTTCSEE
T ss_pred             EEeC-CCc---cChHHHHHHHHHhcCCCCEEEEe----ccCCHHHHHHHHhCCCEE
Confidence            6655 665   23577888888876334444322    222223333333498865

>3aty_A Tcoye, prostaglandin F2A synthase; alpha/beta barrel, oxidoreductase, flavin mononucleotide; HET: FMN; 1.70A {Trypanosoma cruzi} PDB: 3atz_A*

Probab=89.08  E-value=6.5  Score=38.92  Aligned_cols=136  Identities=13%  Similarity=0.031  Sum_probs=82.7

Q ss_pred             HHHH-HcCCCEEEEeccC--------chHH--H-hhhcCC-CHHHHHHHHHHHHHHHHhC-CC-cEEEEEeee-ecCCCC
Q 015894          179 EAAV-AAGAKEVAIFASA--------SESF--S-KSNINC-TIEDSLIRYRDVALAAREL-SI-PVRGYLSCV-VGCPVE  242 (398)
Q Consensus       179 e~a~-~~Gv~~v~i~~~~--------Sd~~--~-~~~~~~-s~~~~l~~~~~~v~~ak~~-G~-~v~~~l~~~-fg~~~~  242 (398)
                      ++|. ++|.|.|.|-..-        |+..  . ...+|- +.++-.+.+.++++.+|+. |- .|.+-|+.. +.....
T Consensus       181 ~~a~~~aGfDgVEih~a~GYLl~QFlsp~~N~R~~D~yGG~slenR~r~~~eiv~aVr~avg~~~v~vRis~~~~~~~~~  260 (379)
T 3aty_A          181 KNAIFKAGFDGVEIHGANGYLLDAFFRESSNKRQSGPYAGTTIDTRCQLIYDVTKSVCDAVGSDRVGLRISPLNGVHGMI  260 (379)
T ss_dssp             HHHHHTSCCSEEEEEECTTSHHHHHHSTTTCCCCSSTTCTTSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCGGGCC
T ss_pred             HHHHHhcCCCEEEEcCcCchHHhhccCCCCCccccCCCCccChhhhHHHHHHHHHHHHHhcCCCeEEEEECcccccccCC
Confidence            4667 8999999886542        2221  1 234555 7777777788888888764 42 344334421 000011


Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCc--CcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhC-CC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTI--GVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMG-IS  319 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~--G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aG-a~  319 (398)
                      ...+.+...++++.+.++|++.|.+....  +...|.   + ++.+++.++. ||..=.--    -...+..+++.| ||
T Consensus       261 ~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~~~~~~~---~-~~~ir~~~~i-Pvi~~G~i----t~~~a~~~l~~g~aD  331 (379)
T 3aty_A          261 DSNPEALTKHLCKKIEPLSLAYLHYLRGDMVNQQIGD---V-VAWVRGSYSG-VKISNLRY----DFEEADQQIREGKVD  331 (379)
T ss_dssp             CSCHHHHHHHHHHHHGGGCCSEEEEECSCTTSCCCCC---H-HHHHHTTCCS-CEEEESSC----CHHHHHHHHHTTSCS
T ss_pred             CCCCHHHHHHHHHHHHHhCCCEEEEcCCCcCCCCccH---H-HHHHHHHCCC-cEEEECCC----CHHHHHHHHHcCCCe
Confidence            34567889999999999999999886521  111232   5 7778887753 44432222    256677888888 77


Q ss_pred             EEee
Q 015894          320 TVDS  323 (398)
Q Consensus       320 ~VD~  323 (398)
                      .|-.
T Consensus       332 ~V~i  335 (379)
T 3aty_A          332 AVAF  335 (379)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            6643

>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A

Probab=89.06  E-value=0.45  Score=43.96  Aligned_cols=97  Identities=10%  Similarity=0.138  Sum_probs=62.7

Q ss_pred             CCHHHHHHHHHHHHhCCCCEE--EEccCcCcCCHHH--HHHHHHHHHhhC-CCCeEEEEeCCccchHHHHHHHHHHhCCC
Q 015894          245 VPPSKVAYVSKQLYDMGCSEI--SLGDTIGVGTPGT--VIPMLEAVLDAV-PVDKLAVHFHDTYGQALSNILASLQMGIS  319 (398)
Q Consensus       245 ~~~~~l~~~a~~l~~~Gad~I--~L~DT~G~~~P~~--v~~lv~~l~~~~-p~~~l~~H~Hnd~GlA~ANalaAl~aGa~  319 (398)
                      .|...+.+-++.+.+.|++.+  -+.|  |...|.-  =.++++.+|+.+ |+.++.+|.|-+.-...  .-.+.++||+
T Consensus        14 ~D~~~l~~~i~~l~~~g~d~~h~DVmD--g~Fvpn~~~G~~~v~~ir~~~~~~~~~dvhLmv~~p~~~--i~~~~~aGad   89 (228)
T 3ovp_A           14 SDLANLGAECLRMLDSGADYLHLDVMD--GHFVPNITFGHPVVESLRKQLGQDPFFDMHMMVSKPEQW--VKPMAVAGAN   89 (228)
T ss_dssp             SCGGGHHHHHHHHHHTTCSCEEEEEEB--SSSSSCBCBCHHHHHHHHHHHCSSSCEEEEEECSCGGGG--HHHHHHHTCS
T ss_pred             CCchhHHHHHHHHHHcCCCEEEEEecC--CCcCcccccCHHHHHHHHHhhCCCCcEEEEEEeCCHHHH--HHHHHHcCCC
Confidence            456677888888999999964  4555  6654422  124678888886 77789999886533222  3456789999


Q ss_pred             EEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCC
Q 015894          320 TVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRT  357 (398)
Q Consensus       320 ~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t  357 (398)
                      +|..-.    |       ++. .+..++..++++|...
T Consensus        90 ~itvH~----E-------a~~-~~~~~i~~i~~~G~k~  115 (228)
T 3ovp_A           90 QYTFHL----E-------ATE-NPGALIKDIRENGMKV  115 (228)
T ss_dssp             EEEEEG----G-------GCS-CHHHHHHHHHHTTCEE
T ss_pred             EEEEcc----C-------Cch-hHHHHHHHHHHcCCCE
Confidence            887732    3       222 3456666666655543

>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}

Probab=88.98  E-value=1.3  Score=40.79  Aligned_cols=68  Identities=16%  Similarity=0.154  Sum_probs=52.7

Q ss_pred             HHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCC
Q 015894          254 SKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLG  329 (398)
Q Consensus       254 a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlG  329 (398)
                      ++++.++|+|.|.+ |+.....|..+.++++.+++.  +..+..-+|+     ...+..|.++|+++|=+++.|+.
T Consensus        94 i~~~~~aGad~I~l-~~~~~~~p~~l~~~i~~~~~~--g~~v~~~v~t-----~eea~~a~~~Gad~Ig~~~~g~t  161 (229)
T 3q58_A           94 VDALAQAGADIIAF-DASFRSRPVDIDSLLTRIRLH--GLLAMADCST-----VNEGISCHQKGIEFIGTTLSGYT  161 (229)
T ss_dssp             HHHHHHHTCSEEEE-ECCSSCCSSCHHHHHHHHHHT--TCEEEEECSS-----HHHHHHHHHTTCSEEECTTTTSS
T ss_pred             HHHHHHcCCCEEEE-CccccCChHHHHHHHHHHHHC--CCEEEEecCC-----HHHHHHHHhCCCCEEEecCccCC
Confidence            55678899998854 887778899999999999874  4456665664     46678899999999977777764

>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}

Probab=88.98  E-value=1.7  Score=42.05  Aligned_cols=81  Identities=15%  Similarity=0.031  Sum_probs=69.3

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcCc---CCHHHHHHHHHHHHhhC-CCCeEEEEe-CCccchHHHHHHHHHHhC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGV---GTPGTVIPMLEAVLDAV-PVDKLAVHF-HDTYGQALSNILASLQMG  317 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~-p~~~l~~H~-Hnd~GlA~ANalaAl~aG  317 (398)
                      +..|.+.+.++++.+.+.|++.|.++-|.|=   ++.++-.++++.+.+.. +.++|-+|. +|+..-++..+..|-++|
T Consensus        27 g~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~G  106 (318)
T 3qfe_A           27 DTLDLASQERYYAYLARSGLTGLVILGTNAEAFLLTREERAQLIATARKAVGPDFPIMAGVGAHSTRQVLEHINDASVAG  106 (318)
T ss_dssp             TEECHHHHHHHHHHHHTTTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHCTTSCEEEECCCSSHHHHHHHHHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcC
Confidence            5689999999999999999999999999995   77888888888888765 345666665 689999999999999999


Q ss_pred             CCEEee
Q 015894          318 ISTVDS  323 (398)
Q Consensus       318 a~~VD~  323 (398)
                      |+.+=+
T Consensus       107 adavlv  112 (318)
T 3qfe_A          107 ANYVLV  112 (318)
T ss_dssp             CSEEEE
T ss_pred             CCEEEE
Confidence            997755

>2a5h_A L-lysine 2,3-aminomutase; radical SAM, four-iron-four-sulfur cluster, 4Fe4S, FS4, SAM, adenosylmethionine, alpha-beta channel; HET: SAM LYS PLP; 2.10A {Clostridium subterminale}

Probab=88.88  E-value=19  Score=35.76  Aligned_cols=157  Identities=11%  Similarity=0.060  Sum_probs=95.1

Q ss_pred             CCCHHHHHHHHHHHHh-cCCCEEEEecCCCCCcccCC-CC--HHHHHHHHHhccCCcEEEEeCCH----------hhHHH
Q 015894          115 IVPAVVKVELIKLLVS-SGLAVVEATSFVSPKWVPQL-AD--AKDVMAAIQNVEGARFPVLTPNL----------KGFEA  180 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~-aGv~~IEvG~~~~~~~~p~~-~D--~~~v~~~i~~~~~~~l~~l~~n~----------~~ie~  180 (398)
                      .++.++..++++.+.+ .|+..|-++.. .|    -+ .|  ..++++.+++.++.+...+..|.          +-++.
T Consensus       144 ~ls~eei~~~i~~i~~~~gi~~V~ltGG-EP----ll~~d~~L~~il~~l~~~~~v~~i~i~Tng~~~~p~~it~e~l~~  218 (416)
T 2a5h_A          144 SMPMERIDKAIDYIRNTPQVRDVLLSGG-DA----LLVSDETLEYIIAKLREIPHVEIVRIGSRTPVVLPQRITPELVNM  218 (416)
T ss_dssp             BCCHHHHHHHHHHHHTCTTCCEEEEEES-CT----TSSCHHHHHHHHHHHHTSTTCCEEEEECSHHHHCGGGCCHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhcCCCcEEEEECC-CC----CCCCHHHHHHHHHHHHhcCCccEEEEEecccccccccCCHHHHHH
Confidence            5788998999999988 79988777542 22    12 23  45666666766665433333322          23444


Q ss_pred             HHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC
Q 015894          181 AVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM  260 (398)
Q Consensus       181 a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~  260 (398)
                      ..+.  +.+.|.+..+..   ..+  +     +.+.+.++.+++.|+.+.......-|-    -.+.+.+.++++.+.+.
T Consensus       219 L~~~--~~v~Isl~~~~~---~ei--~-----~~v~~ai~~L~~aGi~v~i~~vll~Gv----Nd~~e~l~~l~~~l~~l  282 (416)
T 2a5h_A          219 LKKY--HPVWLNTHFNHP---NEI--T-----EESTRACQLLADAGVPLGNQSVLLRGV----NDCVHVMKELVNKLVKI  282 (416)
T ss_dssp             HGGG--CSEEEEECCCSG---GGC--C-----HHHHHHHHHHHHTTCCEEEEEECCTTT----TCSHHHHHHHHHHHHHT
T ss_pred             HHhc--CcEEEEEecCCH---HHH--h-----HHHHHHHHHHHHcCCEEEEEEEEECCC----CCCHHHHHHHHHHHHHc
Confidence            4455  667776654432   111  2     556677788889999876443321111    13567788999999999


Q ss_pred             CCCE--EEEccCc-Cc----CCHHHHHHHHHHHHhhCCC
Q 015894          261 GCSE--ISLGDTI-GV----GTPGTVIPMLEAVLDAVPV  292 (398)
Q Consensus       261 Gad~--I~L~DT~-G~----~~P~~v~~lv~~l~~~~p~  292 (398)
                      |++.  +.+.+.. |.    ..+....++++.++..+++
T Consensus       283 gv~~~~i~~~~~~~g~~~~~~~~~~~~eil~~l~~~~~G  321 (416)
T 2a5h_A          283 RVRPYYIYQCDLSLGLEHFRTPVSKGIEIIEGLRGHTSG  321 (416)
T ss_dssp             TEEEEEEECCCCBTTCGGGCCCHHHHHHHHHTTBTTBCG
T ss_pred             CCceEEEeecCCCCCcccccCCcccHHHHHHHHHHHCCC
Confidence            9875  4556642 32    2345567777777776543

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}

Probab=88.79  E-value=4.1  Score=40.83  Aligned_cols=126  Identities=15%  Similarity=0.218  Sum_probs=72.2

Q ss_pred             HHHHHHHHhcCCCEEEEecC-CCCCcccCCCCHHHHHHHHHhccCCcEEE-EeCCHhhHHHHHHcCCCEEEEeccCchHH
Q 015894          122 VELIKLLVSSGLAVVEATSF-VSPKWVPQLADAKDVMAAIQNVEGARFPV-LTPNLKGFEAAVAAGAKEVAIFASASESF  199 (398)
Q Consensus       122 ~~ia~~L~~aGv~~IEvG~~-~~~~~~p~~~D~~~v~~~i~~~~~~~l~~-l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~  199 (398)
                      .+.++.|.++|++.|.+... ..+.      ...+.++.+++.-+..+.+ -+.+.+..+.+.++|+|.|.+....-..+
T Consensus       146 ~e~~~~lveaGvdvIvldta~G~~~------~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~aGAD~I~vG~g~Gs~~  219 (400)
T 3ffs_A          146 IERAKLLVEAGVDVIVLDSAHGHSL------NIIRTLKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSIC  219 (400)
T ss_dssp             CHHHHHHHHHTCSEEEECCSCCSBH------HHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHHTTCSEEEECC------
T ss_pred             HHHHHHHHHcCCCEEEEeCCCCCcc------cHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHHcCCCEEEEeCCCCcCc
Confidence            67899999999999998532 2221      1123444444322555543 45678889999999999998832110011


Q ss_pred             Hhh---hcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcc
Q 015894          200 SKS---NINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGD  269 (398)
Q Consensus       200 ~~~---~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~D  269 (398)
                      ...   ..+..   .+..+.++.+.+++.+++|.+         +.+-.+++.+.+    +.++||+.+.+.=
T Consensus       220 ~tr~~~g~g~p---~~~al~~v~~~~~~~~IPVIA---------~GGI~~~~di~k----alalGAd~V~vGt  276 (400)
T 3ffs_A          220 TTRIVAGVGVP---QITAIEKCSSVASKFGIPIIA---------DGGIRYSGDIGK----ALAVGASSVMIGS  276 (400)
T ss_dssp             ---CCSCBCCC---HHHHHHHHHHHHTTTTCCEEE---------ESCCCSHHHHHH----HHTTTCSEEEECG
T ss_pred             ccccccccchh---HHHHHHHHHHHHHhcCCCEEe---------cCCCCCHHHHHH----HHHcCCCEEEECh
Confidence            110   11111   245555666666667777642         234445655444    3468999887753

>1u83_A Phosphosulfolactate synthase; structural genomics, phosphosulfolactate PSI, protein structure initiative, midwest center for struc genomics; 2.20A {Bacillus subtilis} SCOP: c.1.27.1

Probab=88.76  E-value=0.64  Score=44.31  Aligned_cols=140  Identities=17%  Similarity=0.146  Sum_probs=85.6

Q ss_pred             HHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecC-CCCCCCCHHHHHHHHHHHHhC
Q 015894          182 VAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGC-PVEGMVPPSKVAYVSKQLYDM  260 (398)
Q Consensus       182 ~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~-~~~~r~~~~~l~~~a~~l~~~  260 (398)
                      ...-+|.+-+....|-.+.             .+++.|+.++++|+.|.      +|. ..+....-..+.++.+.+.++
T Consensus        62 ag~yID~lKfg~GTs~l~~-------------~l~ekI~l~~~~gV~v~------~GGTlfE~~l~qg~~~~yl~~~k~l  122 (276)
T 1u83_A           62 ASDYIDFVKFGWGTSLLTK-------------DLEEKISTLKEHDITFF------FGGTLFEKYVSQKKVNEFHRYCTYF  122 (276)
T ss_dssp             HGGGCCEEEECTTGGGGCT-------------THHHHHHHHHHTTCEEE------ECHHHHHHHHHTTCHHHHHHHHHHT
T ss_pred             hhhhcceEEecCcchhhhH-------------HHHHHHHHHHHcCCeEe------CCcHHHHHHHHcCcHHHHHHHHHHc
Confidence            3345899999877665531             16788999999999875      222 111101112445677778899


Q ss_pred             CCCEEEEccCcCcCCHHHHHHHHHHHHhhCCC-CeE-----EEEeCCccchHHHHHHHHHHhCCCEE--eecc---ccCC
Q 015894          261 GCSEISLGDTIGVGTPGTVIPMLEAVLDAVPV-DKL-----AVHFHDTYGQALSNILASLQMGISTV--DSSV---SGLG  329 (398)
Q Consensus       261 Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~-~~l-----~~H~Hnd~GlA~ANalaAl~aGa~~V--D~Sv---~GlG  329 (398)
                      |.+.|-|.|-+--+.+.+-.++|+.+++.+-. ..+     +...=-+...-+..+...++|||+.|  ++-=   .|+=
T Consensus       123 GF~~IEISdGti~l~~~~~~~lI~~a~~~f~Vl~EvG~K~~~~~~~~~~~~~I~~~~~dLeAGA~~ViiEaRESG~~Gi~  202 (276)
T 1u83_A          123 GCEYIEISNGTLPMTNKEKAAYIADFSDEFLVLSEVGSKDAELASRQSSEEWLEYIVEDMEAGAEKVITEARESGTGGIC  202 (276)
T ss_dssp             TCSEEEECCSSSCCCHHHHHHHHHHHTTTSEEEEECSCCC------CCSTHHHHHHHHHHHHTEEEEEEC----------
T ss_pred             CCCEEEECCCcccCCHHHHHHHHHHHHhhcEEeeeccccCccccCCCCHHHHHHHHHHHHHCCCcEEEEeeeccCCCCcc
Confidence            99999999999999999999999988876521 011     11334567888899999999999854  5522   2555


Q ss_pred             CCCCCCCCCCCccHHHH
Q 015894          330 GCPYAKGASGNVATEDV  346 (398)
Q Consensus       330 ecp~a~graGNa~lE~v  346 (398)
                      +      ..|+.-.+.+
T Consensus       203 ~------~~g~~r~d~v  213 (276)
T 1u83_A          203 S------SSGDVRFQIV  213 (276)
T ss_dssp             --------------CCH
T ss_pred             C------CCCCCcHHHH
Confidence            5      5667665555

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=88.75  E-value=2.5  Score=41.85  Aligned_cols=68  Identities=16%  Similarity=0.134  Sum_probs=50.4

Q ss_pred             HHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894          251 AYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       251 ~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S  324 (398)
                      .+.++.+.++|++.|.| ||... .|..+.+.++.+++.+|++++....=    .....+..++++||+.|.+.
T Consensus       110 ~~~~~~lieaGvd~I~i-dta~G-~~~~~~~~I~~ik~~~p~v~Vi~G~v----~t~e~A~~a~~aGAD~I~vG  177 (366)
T 4fo4_A          110 EERVKALVEAGVDVLLI-DSSHG-HSEGVLQRIRETRAAYPHLEIIGGNV----ATAEGARALIEAGVSAVKVG  177 (366)
T ss_dssp             HHHHHHHHHTTCSEEEE-ECSCT-TSHHHHHHHHHHHHHCTTCEEEEEEE----CSHHHHHHHHHHTCSEEEEC
T ss_pred             HHHHHHHHhCCCCEEEE-eCCCC-CCHHHHHHHHHHHHhcCCCceEeeee----CCHHHHHHHHHcCCCEEEEe
Confidence            45677888999998776 44432 46678889999999998877765321    23456778889999999983

>2fiq_A Putative tagatose 6-phosphate kinase 1; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics; 2.25A {Escherichia coli} SCOP: c.1.10.7

Probab=88.71  E-value=4.5  Score=40.81  Aligned_cols=201  Identities=18%  Similarity=0.127  Sum_probs=112.2

Q ss_pred             cEEEeCCCcccCCCCCC-CCCHHHHHHHHHHH-HhcCCCE--EEEecCCC-C-CcccCCCCHHHHHHHHHhccCCcEEEE
Q 015894           98 VKIVEVGPRDGLQNEKN-IVPAVVKVELIKLL-VSSGLAV--VEATSFVS-P-KWVPQLADAKDVMAAIQNVEGARFPVL  171 (398)
Q Consensus        98 I~i~D~TLRDG~Q~~~~-~~~~~~k~~ia~~L-~~aGv~~--IEvG~~~~-~-~~~p~~~D~~~v~~~i~~~~~~~l~~l  171 (398)
                      ..|+..|-....|.-|. .++.+....++..+ .++|++.  |=++.... + .|  |-..+++-+...+          
T Consensus        40 PVIi~~s~~~v~~~gGY~g~~~~~~~~~v~~~A~~~~vP~~~VaLHlDHg~~~~w--~~~~~~~am~~a~----------  107 (420)
T 2fiq_A           40 KVLIEATSNQVNQFGGYTGMTPADFREFVFAIADKVGFARERIILGGDHLGPNCW--QQENVDAAMEKSV----------  107 (420)
T ss_dssp             CEEEEEETTTBSTTCTTTTBCHHHHHHHHHHHHHHHTCCGGGEEEEEEEESSGGG--TTSBHHHHHHHHH----------
T ss_pred             CEEEEcChhhhhhccCCCCCCHHHHHHHHHHHHHHcCcCcceEEEECCCCCCccc--cccchhhhhhhHH----------
Confidence            44556665444443222 23356665655555 5678883  55543221 1 12  1122343333322          


Q ss_pred             eCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc--EEEEEeeeecCCC--------
Q 015894          172 TPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIP--VRGYLSCVVGCPV--------  241 (398)
Q Consensus       172 ~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~--v~~~l~~~fg~~~--------  241 (398)
                          +.+..++++|...|.+=.|.+..  ..++-.+..-..++.++++++|.+. ..  +.+.|..+.|.++        
T Consensus       108 ----e~i~~aI~aGFtSVMiD~S~~~~--~~~~pl~eNi~~~rt~elv~~Ah~~-~~~~~eaElG~vgG~Ev~v~~~~~~  180 (420)
T 2fiq_A          108 ----ELVKAYVRAGFSKIHLDASMSCA--GDPIPLAPETVAERAAVLCFAAESV-ATDCQREQLSYVIGTEVPVPGGEAS  180 (420)
T ss_dssp             ----HHHHHHHHTTCCEEEECCCSCCB--TCCSSCCHHHHHHHHHHHHHHHHHH-CCHHHHHHCEEEEECSSCC------
T ss_pred             ----HHHHHHHHhCCCEEEECCCCCCC--CCCCCccHHHHHHHHHHHHHHHHHH-cccCCcccceEEeeeecCCCCCccc
Confidence                36788999999999985443110  0111122222334468888888876 32  1111222223221        


Q ss_pred             -C-C--CCCHHHHHHHHH----HHHhCCCCE-----EEEccCcCc---------CCHHHHHHHHHHHHhhCCCCe-EEEE
Q 015894          242 -E-G--MVPPSKVAYVSK----QLYDMGCSE-----ISLGDTIGV---------GTPGTVIPMLEAVLDAVPVDK-LAVH  298 (398)
Q Consensus       242 -~-~--r~~~~~l~~~a~----~l~~~Gad~-----I~L~DT~G~---------~~P~~v~~lv~~l~~~~p~~~-l~~H  298 (398)
                       . +  .++|+...++++    .+.+.|+|.     |.|+=..|.         +.+..+.+    |++.++. | |.+-
T Consensus       181 ~~~~~~~T~PeeA~~Fve~~~~~~~~tGvd~~~~~vi~LAV~iGt~HG~y~~~~ld~e~l~~----I~~~v~~-P~LVle  255 (420)
T 2fiq_A          181 AIQSVHITHVEDAANTLRTHQKAFIARGLTEALTRVIAIVVQPGVEFDHSNIIHYQPQEAQA----LAQWIEN-TRMVYE  255 (420)
T ss_dssp             ----CCCCCHHHHHHHHHHHHHHHHTTTCHHHHHTEEEEECCCSCEECSSCEECCCGGGGHH----HHHHHTT-SSCEEE
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHHHhhCCCcccccceEEEEeCCccCCCCCCCCcCHHHHHH----HHHhcCC-CCEEEe
Confidence             1 1  589999988887    666789766     335533332         33444444    4443332 4 7777


Q ss_pred             eCCccchHHHHHHHHHHhCCCEEe
Q 015894          299 FHDTYGQALSNILASLQMGISTVD  322 (398)
Q Consensus       299 ~Hnd~GlA~ANalaAl~aGa~~VD  322 (398)
                      .|.+.|..-.+...+++.|+..|+
T Consensus       256 ~HGgSg~~~e~l~~~v~~Gi~kiN  279 (420)
T 2fiq_A          256 AHSTDYQTRTAYWELVRDHFAILK  279 (420)
T ss_dssp             ESCCTTCCHHHHHHHHHTTEEEEE
T ss_pred             cCCCCCCCHHHHHHHHHcCCCEEE
Confidence            799999999999999999999988

>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A*

Probab=88.71  E-value=2.6  Score=41.70  Aligned_cols=100  Identities=12%  Similarity=0.162  Sum_probs=77.9

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCEEEEccCcC---cCCHHHHHHHHHHHHhhCC-CCeEEEEe-CCccchHHHHHHHHHHh
Q 015894          242 EGMVPPSKVAYVSKQLYDMGCSEISLGDTIG---VGTPGTVIPMLEAVLDAVP-VDKLAVHF-HDTYGQALSNILASLQM  316 (398)
Q Consensus       242 ~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~lv~~l~~~~p-~~~l~~H~-Hnd~GlA~ANalaAl~a  316 (398)
                      .+..|.+.+.++++.+.+.|++.|.++-|.|   .++.++-.++++.+.+... .+++-++. +|+..-++..+..|-++
T Consensus        74 dg~ID~~al~~lv~~li~~Gv~Gl~v~GTTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~  153 (360)
T 4dpp_A           74 DGRFDLEAYDDLVNIQIQNGAEGVIVGGTTGEGQLMSWDEHIMLIGHTVNCFGGSIKVIGNTGSNSTREAIHATEQGFAV  153 (360)
T ss_dssp             TSSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHT
T ss_pred             CCCcCHHHHHHHHHHHHHcCCCEEEecccccChhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHHc
Confidence            3578999999999999999999999999999   5677888888888887653 45777755 68899999999999999


Q ss_pred             CCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q 015894          317 GISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLN  351 (398)
Q Consensus       317 Ga~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~  351 (398)
                      ||+.+=+.      .||-.    .++-++++..++
T Consensus       154 Gadavlvv------~PyY~----k~sq~gl~~hf~  178 (360)
T 4dpp_A          154 GMHAALHI------NPYYG----KTSIEGLIAHFQ  178 (360)
T ss_dssp             TCSEEEEE------CCCSS----CCCHHHHHHHHH
T ss_pred             CCCEEEEc------CCCCC----CCCHHHHHHHHH
Confidence            99977553      23221    235577777766

>2qiw_A PEP phosphonomutase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: P6G; 1.80A {Corynebacterium glutamicum atcc 13032}

Probab=88.60  E-value=4  Score=38.32  Aligned_cols=151  Identities=17%  Similarity=0.143  Sum_probs=89.4

Q ss_pred             HHHHHHHhcCCCEEEEecC-C-----CCCcccCCCCHHHHHHHHHhcc-CCcEEEEe--C----C--HhhHHHHHHcCCC
Q 015894          123 ELIKLLVSSGLAVVEATSF-V-----SPKWVPQLADAKDVMAAIQNVE-GARFPVLT--P----N--LKGFEAAVAAGAK  187 (398)
Q Consensus       123 ~ia~~L~~aGv~~IEvG~~-~-----~~~~~p~~~D~~~v~~~i~~~~-~~~l~~l~--~----n--~~~ie~a~~~Gv~  187 (398)
                      --++.++++|++.|=+|.. .     .|+..+  -+.++++..++.+. .+.+.+++  +    +  .+-+.+..++|+.
T Consensus        31 ~sA~~~~~aG~dai~vg~~s~a~~~G~pD~~~--vt~~em~~~~~~I~r~~~~pviaD~~~Gyg~~~~~~~~~l~~aGa~  108 (255)
T 2qiw_A           31 WSAGLVEEAGFSGLTIGSHPVADATGSSDGEN--MNFADYMAVVKKITSAVSIPVSVDVESGYGLSPADLIAQILEAGAV  108 (255)
T ss_dssp             HHHHHHHHTTCSCEEECHHHHHHHTTCCTTTC--SCHHHHHHHHHHHHHHCSSCEEEECTTCTTCCHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHcCCCEEEEChHHHHHhCCCCCCCC--cCHHHHHHHHHHHHhcCCCCEEeccCCCcCcHHHHHHHHHHHcCCc
Confidence            4567788999999999842 1     233221  34567766665432 12223333  2    1  3345566789999


Q ss_pred             EEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc--EEEEEeeeecCCCCCCC----CHHHHHHHHHHHHhCC
Q 015894          188 EVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIP--VRGYLSCVVGCPVEGMV----PPSKVAYVSKQLYDMG  261 (398)
Q Consensus       188 ~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~--v~~~l~~~fg~~~~~r~----~~~~l~~~a~~l~~~G  261 (398)
                      -|.|-...   |...+-=.+.++..++++.+++.+++.|++  |.+..-...    .++.    ..+...+-++.+.++|
T Consensus       109 gv~iEd~~---~~~~k~l~~~~e~~~~I~a~~~a~~~~g~~~~v~aRtd~~~----~g~~~~~~~~~~ai~ra~a~~eAG  181 (255)
T 2qiw_A          109 GINVEDVV---HSEGKRVREAQEHADYIAAARQAADVAGVDVVINGRTDAVK----LGADVFEDPMVEAIKRIKLMEQAG  181 (255)
T ss_dssp             EEEECSEE---GGGTTEECCHHHHHHHHHHHHHHHHHHTCCCEEEEEECHHH----HCTTTSSSHHHHHHHHHHHHHHHT
T ss_pred             EEEECCCC---CCCCCcccCHHHHHHHHHHHHHHHHhcCCCeEEEEEechhh----ccCCcchHHHHHHHHHHHHHHHcC
Confidence            99998774   222222236778888888888877777887  332221100    0111    2467777788888999


Q ss_pred             CCEEEEccCcCcCCHHHHHHHHHH
Q 015894          262 CSEISLGDTIGVGTPGTVIPMLEA  285 (398)
Q Consensus       262 ad~I~L~DT~G~~~P~~v~~lv~~  285 (398)
                      |+.|.+.   |.-++..+.++.+.
T Consensus       182 Ad~i~~e---~~~~~~~~~~i~~~  202 (255)
T 2qiw_A          182 ARSVYPV---GLSTAEQVERLVDA  202 (255)
T ss_dssp             CSEEEEC---CCCSHHHHHHHHTT
T ss_pred             CcEEEEc---CCCCHHHHHHHHHh
Confidence            9999984   33334555444443

>3qtg_A Pyruvate kinase, PK; TIM barrel, glycolysis, transferase; 2.20A {Pyrobaculum aerophilum}

Probab=88.58  E-value=23  Score=36.05  Aligned_cols=225  Identities=13%  Similarity=0.072  Sum_probs=131.7

Q ss_pred             CCCHHHHHHHHH-HHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-cCCcEEEEeCCHhhH---HHHHHcCCCEE
Q 015894          115 IVPAVVKVELIK-LLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-EGARFPVLTPNLKGF---EAAVAAGAKEV  189 (398)
Q Consensus       115 ~~~~~~k~~ia~-~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~~~~l~~l~~n~~~i---e~a~~~Gv~~v  189 (398)
                      .++..++..|.. .-.+.|+|.|-+.|--++      +|..++.+.+++. .++.+.+-.-+.+++   +.-++. .|.|
T Consensus       178 ~lTekD~~dl~~~~~~~~~vD~Ia~SfVr~a------~Dv~~~r~~l~~~g~~~~iiaKIE~~eav~nldeIl~~-sDgI  250 (461)
T 3qtg_A          178 TPAEEDVEALKAISPIRDNIDYVAISLAKSC------KDVDSVRSLLTELGFQSQVAVKIETKGAVNNLEELVQC-SDYV  250 (461)
T ss_dssp             SSCHHHHHHHHHHGGGGGGCCEEEECSCCSH------HHHHHHHHHHHHTTCCCEEEEEECSHHHHHTHHHHHHT-CSEE
T ss_pred             CCCHHHHHHHHHHHHhhcCCCEEEecCCCCH------HHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHh-cccE
Confidence            356666666542 567889999988764332      3445555555533 245555656665554   344444 5766


Q ss_pred             EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecC-CCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 015894          190 AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGC-PVEGMVPPSKVAYVSKQLYDMGCSEISLG  268 (398)
Q Consensus       190 ~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~-~~~~r~~~~~l~~~a~~l~~~Gad~I~L~  268 (398)
                      .+.  -.|.    ...+..++.....+.+++.|+++|..|-+. +.+.-+ -...+.+..++-+++..+. -|+|.+-|.
T Consensus       251 mVa--RGDL----gvei~~e~v~~~Qk~ii~~~~~~gkpvi~A-TQMLeSMi~~p~PTRAEvsDVanAV~-dGaDavMLS  322 (461)
T 3qtg_A          251 VVA--RGDL----GLHYGLDALPIVQRRIVHTSLKYGKPIAVA-TQLLDSMQSSPIPTRAEINDVFTTAS-MGVDSLWLT  322 (461)
T ss_dssp             EEE--HHHH----TTTSCTTTHHHHHHHHHHHHHHTTCCEEEE-SSSSGGGGTCSSCCHHHHHHHHHHHH-TTCSEEEEC
T ss_pred             EEc--cccc----cccCCHHHHHHHHHHHHHHHHHhCCCEEEe-ccchHhhccCCCccHHHHHHHHHHHH-hCCcEEEEc
Confidence            653  1232    223345566677788999999999987521 000101 1123456778888776544 799999987


Q ss_pred             -cCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCcc--chHHHHHHHHHHhCCCEEeeccccC-----CC-CCCCCCCCC
Q 015894          269 -DTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTY--GQALSNILASLQMGISTVDSSVSGL-----GG-CPYAKGASG  339 (398)
Q Consensus       269 -DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~--GlA~ANalaAl~aGa~~VD~Sv~Gl-----Ge-cp~a~graG  339 (398)
                       .|+-.-.|.+..+.+..+....-...-.++...+.  ..|.|...+|-..++.+|-.|-.|-     .. .|-+|- -.
T Consensus       323 gETA~G~yPveaV~~m~~I~~~aE~~~~~~~~~~~~~~aia~aa~~~a~~~~a~Iv~~T~SG~tA~~vsr~RP~~pI-ia  401 (461)
T 3qtg_A          323 NETASGKYPLAAVSWLSRILMNVEYQIPQSPLLQNSRDRFAKGLVELAQDLGANILVFSMSGTLARRIAKFRPRGVV-YV  401 (461)
T ss_dssp             HHHHTSSCHHHHHHHHHHHHHTCCCCCCCCCCCCSHHHHHHHHHHHHHHHHTCEEEEECSSSHHHHHHHTTCCSSCE-EE
T ss_pred             ccccCCCCHHHHHHHHHHHHHHHHhhhhhccCCCCHHHHHHHHHHHHHHhcCCCEEEECCCcHHHHHHHhhCCCCCE-EE
Confidence             68888899998888888887652110011222222  2344455566678888777888873     33 232221 12


Q ss_pred             CccHHHHHHHHHh-CCC
Q 015894          340 NVATEDVVYMLNG-LGV  355 (398)
Q Consensus       340 Na~lE~vv~~L~~-~Gi  355 (398)
                      -.+-+.+...|.- .|+
T Consensus       402 ~T~~~~~~r~l~l~~GV  418 (461)
T 3qtg_A          402 GTPNVRVARSLSIVWAL  418 (461)
T ss_dssp             EESCHHHHHHHTTSTTE
T ss_pred             eCCCHHHHhhceeccce
Confidence            3345777777764 355

>4gxw_A Adenosine deaminase; amidohydrolase, COG1816, EFI, structural genomics, hydrolase; 1.30A {Burkholderia ambifaria}

Probab=88.54  E-value=20  Score=35.36  Aligned_cols=137  Identities=12%  Similarity=0.043  Sum_probs=89.7

Q ss_pred             HHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHH-hCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894          179 EAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAR-ELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL  257 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak-~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l  257 (398)
                      +.+.+-|+..+-+..  ++.+....-|.+.++.++.+.+.++.++ +.|+.++.-+++.      -..+++...+.++.+
T Consensus       103 ed~a~dgV~Y~Eirf--~P~~~~~~~Gl~~~~vv~av~~g~~~a~~~~gi~~rlI~~~~------R~~~~e~a~~~~~~a  174 (380)
T 4gxw_A          103 EDAAAHNVRHAEFFW--NPTGTVRVSGIPYADAQAAIVTGMRDAARDFGIGARLIPSID------REQDPDEAVAIVDWM  174 (380)
T ss_dssp             HHHHTTTEEEEEEEE--CHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHCCEEEEEEEEE------TTSCHHHHHHHHHHH
T ss_pred             HHHHHCCCeEEEEEc--CHHHhccccCCCHHHHHHHHHHHHHHHHHhcCCcEEEEEeec------CCCCHHHHHHHHHHH
Confidence            444556777666654  3443333357889999999888887765 5798887544431      124678887887777


Q ss_pred             HhC---CCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHH-hCCCEEeeccc
Q 015894          258 YDM---GCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQ-MGISTVDSSVS  326 (398)
Q Consensus       258 ~~~---Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~-aGa~~VD~Sv~  326 (398)
                      .++   |+-.|.|+-.=....|....+.+...++.  ++++.+|+=..-| ...|...|++ .|+++|+=.+.
T Consensus       175 ~~~~~~~VvG~dL~g~E~~~p~~~f~~~f~~ar~~--Gl~~t~HAGE~~~-p~~~i~~al~~lga~RIgHG~~  244 (380)
T 4gxw_A          175 KANRADEVAGIGIDYRENDRPPELFWKAYRDARAA--GFRTTAHAGEFGM-PWRNVETAVDLLHVDRVDHGYT  244 (380)
T ss_dssp             HHTCCTTBCEEEEESCCTTCCGGGGHHHHHHHHHT--TCEEEEEESCTTC-CHHHHHHHHHTSCCSEEEECGG
T ss_pred             HHhCCCCEEEEeecCCCCCCCHHHHHHHHHHHHHc--CCCeeeeccccCC-chHHHHHHHHHcCCccccccee
Confidence            665   34455554332344577788888887764  4689999876433 2357788886 79999975444

>3ktc_A Xylose isomerase; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.54A {Pectobacterium atrosepticum SCRI1043}

Probab=88.54  E-value=6.5  Score=37.32  Aligned_cols=197  Identities=12%  Similarity=0.065  Sum_probs=96.5

Q ss_pred             HHHHHHHHhc-CCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC---------------CH----------
Q 015894          122 VELIKLLVSS-GLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP---------------NL----------  175 (398)
Q Consensus       122 ~~ia~~L~~a-Gv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~---------------n~----------  175 (398)
                      .+.++.+.++ |++.||+.++...     -.+.+++.+.+++ .++++.++.+               +.          
T Consensus        36 ~e~l~~aa~~~G~~~VEl~~~~~~-----~~~~~~l~~~l~~-~Gl~i~~~~~~~~~~~~~~g~l~~~d~~~r~~~i~~~  109 (333)
T 3ktc_A           36 IDQINAAKEVGELSYVDLPYPFTP-----GVTLSEVKDALKD-AGLKAIGITPEIYLQKWSRGAFTNPDPAARAAAFELM  109 (333)
T ss_dssp             HHHHHHHHHHSSEEEEEEEESCST-----TCCHHHHHHHHHH-HTCEEEEEEECTTSGGGTTCSTTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCCEEEecCCCcc-----hhHHHHHHHHHHH-cCCeEEEEecCcCcccccCCCCCCcCHHHHHHHHHHH
Confidence            3456666778 9999999754321     1456666666653 2455444322               10          


Q ss_pred             -hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCC--CCCCCHHHHHH
Q 015894          176 -KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPV--EGMVPPSKVAY  252 (398)
Q Consensus       176 -~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~--~~r~~~~~l~~  252 (398)
                       +.++.|.+.|++.|.+..+. +-. ......+.++.++++.+.++.+-+..-.+.+.|...-..+.  ..-.+.+.+..
T Consensus       110 ~~~i~~A~~LGa~~vv~~~g~-~g~-~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~i~lE~~p~~~~~~~~~~~~~~~~~  187 (333)
T 3ktc_A          110 HESAGIVRELGANYVKVWPGQ-DGW-DYPFQVSHKNLWKLAVDGMRDLAGANPDVKFAIEYKPREPRVKMTWDSAARTLL  187 (333)
T ss_dssp             HHHHHHHHHHTCSEEEECCTT-CEE-SSTTSSCHHHHHHHHHHHHHHHHHTCTTSEEEEECCSCSSSSEESSCSHHHHHH
T ss_pred             HHHHHHHHHhCCCEEEECCCC-CCc-CCCCcCCHHHHHHHHHHHHHHHHHHhhcCCEEEEEecCCCCccccCCCHHHHHH
Confidence             12456677899999775441 100 00112345566666555554443332223333332110111  11235666666


Q ss_pred             HHHHHHhCCCC-EEEEccCcCcCCH--HHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCC
Q 015894          253 VSKQLYDMGCS-EISLGDTIGVGTP--GTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLG  329 (398)
Q Consensus       253 ~a~~l~~~Gad-~I~L~DT~G~~~P--~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlG  329 (398)
                      +++.   .|.+ .-..-||. .+.+  ....+.++.++  ..+.-.++|++|..|            +.+   .   ++ 
T Consensus       188 ll~~---v~~~~vgl~lD~~-H~~~~g~~~~~~~~~~~--~~~~i~~vH~~D~~~------------~~d---~---~~-  242 (333)
T 3ktc_A          188 GIED---IGLDNVGVLLDFG-HALYGGESPADSAQLII--DRGRLFGMDVNDNLR------------GWD---D---DL-  242 (333)
T ss_dssp             HHHH---HTCTTEEEEEEHH-HHHHTTCCHHHHHHHHH--HTTCEEEEEBCBCCS------------SSC---C---CB-
T ss_pred             HHHH---cCCcceEEEEecC-cHhhhcCCHHHHHHHHH--hCCCEEEEEeCCCCC------------CCC---C---Cc-
Confidence            5554   3433 22334542 1111  11222333322  122235889998654            111   0   00 


Q ss_pred             CCCCCCCCCCC-ccHHHHHHHHHhCCCC
Q 015894          330 GCPYAKGASGN-VATEDVVYMLNGLGVR  356 (398)
Q Consensus       330 ecp~a~graGN-a~lE~vv~~L~~~Gi~  356 (398)
                          .+ +.|+ .++..++..|++.|++
T Consensus       243 ----~~-G~G~~~d~~~i~~~L~~~gy~  265 (333)
T 3ktc_A          243 ----VV-GTVHMTEIFEFFYVLKINNWQ  265 (333)
T ss_dssp             ----CT-TSSCHHHHHHHHHHHHHTTCC
T ss_pred             ----CC-CCCCHHHHHHHHHHHHHcCCC
Confidence                11 3677 6999999999987764

>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}

Probab=88.52  E-value=2.2  Score=41.16  Aligned_cols=82  Identities=13%  Similarity=0.069  Sum_probs=68.5

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcCc---CCHHHHHHHHHHHHhhC-CCCeEEEEe-CCccchHHHHHHHHHHhC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGV---GTPGTVIPMLEAVLDAV-PVDKLAVHF-HDTYGQALSNILASLQMG  317 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~-p~~~l~~H~-Hnd~GlA~ANalaAl~aG  317 (398)
                      +..|.+.+.++++.+.+.|++.|.++-|.|=   ++.++-.++++.+.+.. ..++|-++. +|+..-++..+..|-++|
T Consensus        38 g~iD~~~l~~li~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~~ai~la~~A~~~G  117 (315)
T 3si9_A           38 GAIDEKAFCNFVEWQITQGINGVSPVGTTGESPTLTHEEHKRIIELCVEQVAKRVPVVAGAGSNSTSEAVELAKHAEKAG  117 (315)
T ss_dssp             SCBCHHHHHHHHHHHHHTTCSEEECSSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEeCccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcC
Confidence            5789999999999999999999999999995   56777788888887765 345666664 689999999999999999


Q ss_pred             CCEEeec
Q 015894          318 ISTVDSS  324 (398)
Q Consensus       318 a~~VD~S  324 (398)
                      |+.|=+.
T Consensus       118 adavlv~  124 (315)
T 3si9_A          118 ADAVLVV  124 (315)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEC
Confidence            9977543

>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*

Probab=88.51  E-value=3.6  Score=38.21  Aligned_cols=172  Identities=12%  Similarity=0.038  Sum_probs=87.0

Q ss_pred             HHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc--cCCcEEEEeCCHhhHHHHHHcCCCEEEEeccCchHH
Q 015894          122 VELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV--EGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESF  199 (398)
Q Consensus       122 ~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~--~~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~  199 (398)
                      .++++.|.++|.|.||+|.  + ..    ...+.+++.++++  .++.+..+..+...+    ++|+|.+-+.+=.++-.
T Consensus        23 ~~~~~~l~~~GaD~IelG~--S-~g----~t~~~~~~~v~~ir~~~~Pivl~~y~~n~i----~~gvDg~iipdLp~ee~   91 (234)
T 2f6u_A           23 DEIIKAVADSGTDAVMISG--T-QN----VTYEKARTLIEKVSQYGLPIVVEPSDPSNV----VYDVDYLFVPTVLNSAD   91 (234)
T ss_dssp             HHHHHHHHTTTCSEEEECC--C-TT----CCHHHHHHHHHHHTTSCCCEEECCSSCCCC----CCCSSEEEEEEETTBSB
T ss_pred             HHHHHHHHHcCCCEEEECC--C-CC----CCHHHHHHHHHHhcCCCCCEEEecCCcchh----hcCCCEEEEcccCCCCC
Confidence            4568999999999999997  2 11    1234455555433  345544444332222    77999877653322211


Q ss_pred             HhhhcCCCHHHHHHHHHHHHHHHHhCC-----CcE--EEEEeeeecCCCC---------CCCCHHHHHHHHHHHHh-CCC
Q 015894          200 SKSNINCTIEDSLIRYRDVALAARELS-----IPV--RGYLSCVVGCPVE---------GMVPPSKVAYVSKQLYD-MGC  262 (398)
Q Consensus       200 ~~~~~~~s~~~~l~~~~~~v~~ak~~G-----~~v--~~~l~~~fg~~~~---------~r~~~~~l~~~a~~l~~-~Ga  262 (398)
                          -.+-.....+.+..+.+.++++|     +.+  .+|+..   .|..         ...+++.+..+++...+ +|-
T Consensus        92 ----~~~~~g~~~~~~~~~~~~~~~~g~~~~~l~~I~~gYil~---~P~~~~~rl~~g~~~~~~e~~~~~a~~g~~~l~~  164 (234)
T 2f6u_A           92 ----GDWITGKHAQWVRMHYENLQKFTEIIESEFIQIEGYIVL---NPDSAVARVTKALCNIDKELAASYALVGEKLFNL  164 (234)
T ss_dssp             ----GGGTTHHHHHHHHTTGGGHHHHHHHHHSTTEEEEEEEEC---CTTSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCC
T ss_pred             ----HHHHhhhHHHHHHhhhhhHHHcCCcccceeeeecceEEE---CCCCceEEeecCCCCCCHHHHHHHHHhhhhhcCC
Confidence                01110111111111112236667     654  345543   3432         11256666666655542 355


Q ss_pred             CEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeE--EEEeCCccchHHHHHHHHHHhCCCEE
Q 015894          263 SEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKL--AVHFHDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       263 d~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l--~~H~Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                      ..|++.- .|.   ....++++.+++..+++|+  ++-.++-     ..+-..++ ||+.|
T Consensus       165 ~~Vyl~~-~G~---~~~~~~i~~i~~~~~~~Pv~vGgGI~s~-----e~a~~~~~-gAd~V  215 (234)
T 2f6u_A          165 PIIYIEY-SGT---YGNPELVAEVKKVLDKARLFYGGGIDSR-----EKAREMLR-YADTI  215 (234)
T ss_dssp             SEEEEEC-TTS---CCCHHHHHHHHHHCSSSEEEEESCCCSH-----HHHHHHHH-HSSEE
T ss_pred             CEEEEeC-CCC---cchHHHHHHHHHhCCCCCEEEEecCCCH-----HHHHHHHh-CCCEE
Confidence            7777654 675   2356788888887633444  4444432     22223344 88865

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=88.47  E-value=7.5  Score=38.21  Aligned_cols=68  Identities=15%  Similarity=0.133  Sum_probs=49.0

Q ss_pred             HHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeecc
Q 015894          251 AYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSV  325 (398)
Q Consensus       251 ~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv  325 (398)
                      .+.++.+.++|++.|.|- + +...|..+.+.++.+++.+ ++++.+..=.    ....+..++++||+.|.+++
T Consensus       107 ~e~a~~l~eaGad~I~ld-~-a~G~~~~~~~~i~~i~~~~-~~~Vivg~v~----t~e~A~~l~~aGaD~I~VG~  174 (361)
T 3khj_A          107 IERAKLLVEAGVDVIVLD-S-AHGHSLNIIRTLKEIKSKM-NIDVIVGNVV----TEEATKELIENGADGIKVGI  174 (361)
T ss_dssp             HHHHHHHHHTTCSEEEEC-C-SCCSBHHHHHHHHHHHHHC-CCEEEEEEEC----SHHHHHHHHHTTCSEEEECS
T ss_pred             HHHHHHHHHcCcCeEEEe-C-CCCCcHHHHHHHHHHHHhc-CCcEEEccCC----CHHHHHHHHHcCcCEEEEec
Confidence            466778889999988763 2 2346788889999999988 4566552212    23556788899999999843

>2bmb_A Folic acid synthesis protein FOL1; folate biosynthesis, transferase, ligase, multifunctional enzyme; HET: PMM; 2.3A {Saccharomyces cerevisiae}

Probab=88.41  E-value=26  Score=36.44  Aligned_cols=167  Identities=13%  Similarity=0.142  Sum_probs=95.1

Q ss_pred             cEEEeCCC---cccCCCCCCCC-CHHHHHHHHHHHHhcC-----CCEEEEecCCC-CCcccCCCCHHHHHHHH---Hhcc
Q 015894           98 VKIVEVGP---RDGLQNEKNIV-PAVVKVELIKLLVSSG-----LAVVEATSFVS-PKWVPQLADAKDVMAAI---QNVE  164 (398)
Q Consensus        98 I~i~D~TL---RDG~Q~~~~~~-~~~~k~~ia~~L~~aG-----v~~IEvG~~~~-~~~~p~~~D~~~v~~~i---~~~~  164 (398)
                      +-|+.+|.   =||++.    + +.+..++.++.+.+.|     .+.|++|.-.. |... .....+|+.+.+   +.+.
T Consensus       228 MGIlNvTPDSFsDGG~~----~~~~~~al~~a~~mv~~G~~~~~AdIIDIGgeSTRPGa~-~vs~eEEl~RvvpvI~~i~  302 (545)
T 2bmb_A          228 MAIFNATPDSFSDGGEH----FADIESQLNDIIKLCKDALYLHESVIIDVGGCSTRPNSI-QASEEEEIRRSIPLIKAIR  302 (545)
T ss_dssp             EEEEECSCSSTTTTTTT----TTCHHHHHHHHHHHHHHHHTTCSCEEEEEECSCCSTTCC-CCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEeCCCCCCcCCCcC----cCCHHHHHHHHHHHHHcCCCCCCceEEEECCCCCCCCCC-CCCHHHHHHHHHHHHHHHH
Confidence            44667766   456543    4 7899999999999999     99999996432 3321 122233333333   2221


Q ss_pred             --------CCcEEEEeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEee
Q 015894          165 --------GARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAREL-SIPVRGYLSC  235 (398)
Q Consensus       165 --------~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~~v~~~l~~  235 (398)
                              ++.+++=+...+-+++|+++|++.|.=.....         .+        .++.+.++++ |..+.  +|.
T Consensus       303 ~~~~~~~~~vpISIDT~~a~VaeaAl~aGadIINDVsg~~---------~d--------~~m~~vva~~~~~~vV--lmH  363 (545)
T 2bmb_A          303 ESTELPQDKVILSIDTYRSNVAKEAIKVGVDIINDISGGL---------FD--------SNMFAVIAENPEICYI--LSH  363 (545)
T ss_dssp             HCSSSCGGGEEEEEECCCHHHHHHHHHTTCCEEEETTTTS---------SC--------TTHHHHHHTCTTSEEE--EEC
T ss_pred             hhccccCCCCeEEEeCCcHHHHHHHHHcCCCEEEeCCCCc---------CC--------hHHHHHHHHhCCCeEE--EEC
Confidence                    22233323566778999999999886321110         00        1345667788 87664  554


Q ss_pred             eecCCCC--C--CCC-----------------------------H-----HHHHHHHHHHHhCCCC--EEEEccCcCcC-
Q 015894          236 VVGCPVE--G--MVP-----------------------------P-----SKVAYVSKQLYDMGCS--EISLGDTIGVG-  274 (398)
Q Consensus       236 ~fg~~~~--~--r~~-----------------------------~-----~~l~~~a~~l~~~Gad--~I~L~DT~G~~-  274 (398)
                      .-|.|..  .  .++                             .     +++.+.++.+.++|++  .|.|==-+|.. 
T Consensus       364 ~rG~p~tm~~~~~y~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~vv~~v~~~l~~~i~~a~~~GI~~~~IilDPGiGF~K  443 (545)
T 2bmb_A          364 TRGDISTMNRLAHYENFALGDSIQQEFVHNTDIQQLDDLKDKTVLIRNVGQEIGERYIKAIDNGVKRWQILIDPGLGFAK  443 (545)
T ss_dssp             CCSCTTTGGGCCCCSSCTTTTTEEEEEETTEEGGGSTTHHHHCHHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSC
T ss_pred             CCCCCCCccccccccccccccccchhccccccccccccccccchHHHHHHHHHHHHHHHHHHcCCCHHHEEEeCCCCccc
Confidence            4444421  0  111                             1     3455567778889986  45543333433 


Q ss_pred             CHHHHHHHHHHHHh
Q 015894          275 TPGTVIPMLEAVLD  288 (398)
Q Consensus       275 ~P~~v~~lv~~l~~  288 (398)
                      ++.+-.++++.+..
T Consensus       444 t~~~nl~lL~~l~~  457 (545)
T 2bmb_A          444 TWKQNLQIIRHIPI  457 (545)
T ss_dssp             CHHHHHHHHHTHHH
T ss_pred             ChHHHHHHHHHHHH
Confidence            24555666666553

>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A

Probab=88.38  E-value=2.2  Score=40.68  Aligned_cols=81  Identities=12%  Similarity=0.076  Sum_probs=68.9

Q ss_pred             CCCHHHHHHHHHHHHhCCCCEEEEccCcCc---CCHHHHHHHHHHHHhhC-CCCeEEEEe-CCccchHHHHHHHHHHhCC
Q 015894          244 MVPPSKVAYVSKQLYDMGCSEISLGDTIGV---GTPGTVIPMLEAVLDAV-PVDKLAVHF-HDTYGQALSNILASLQMGI  318 (398)
Q Consensus       244 r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~-p~~~l~~H~-Hnd~GlA~ANalaAl~aGa  318 (398)
                      ..|.+.+.++++.+.+.|++.|.++-|.|-   ++.++-.++++.+.+.. ..+++-+|. +|+..-++..+..|-++||
T Consensus        19 ~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Lt~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~Ga   98 (292)
T 3daq_A           19 KVNLEALKAHVNFLLENNAQAIIVNGTTAESPTLTTDEKELILKTVIDLVDKRVPVIAGTGTNDTEKSIQASIQAKALGA   98 (292)
T ss_dssp             EECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHHTC
T ss_pred             CcCHHHHHHHHHHHHHcCCCEEEECccccccccCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHHcCC
Confidence            678899999999999999999999999996   45777778888888765 346777776 7899999999999999999


Q ss_pred             CEEeec
Q 015894          319 STVDSS  324 (398)
Q Consensus       319 ~~VD~S  324 (398)
                      +.+=+.
T Consensus        99 davlv~  104 (292)
T 3daq_A           99 DAIMLI  104 (292)
T ss_dssp             SEEEEE
T ss_pred             CEEEEC
Confidence            977654

>3hgj_A Chromate reductase; TIM barrel, oxidoreductase; HET: FMN; 2.00A {Thermus scotoductus} SCOP: c.1.4.0 PDB: 3hf3_A*

Probab=88.29  E-value=5.9  Score=38.58  Aligned_cols=121  Identities=21%  Similarity=0.199  Sum_probs=76.4

Q ss_pred             HHHHHHHHHHHHHHHhCCCcEEEEEeeeec--C-----------------CCC-----C-----CCCH-------HHHHH
Q 015894          209 EDSLIRYRDVALAARELSIPVRGYLSCVVG--C-----------------PVE-----G-----MVPP-------SKVAY  252 (398)
Q Consensus       209 ~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg--~-----------------~~~-----~-----r~~~-------~~l~~  252 (398)
                      ++.++..+++++.++++|-.+...|...--  .                 |-.     +     ..+.       +.+.+
T Consensus        77 d~~i~~~~~~~~~vh~~G~~i~~Ql~H~Gr~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p~~mt~~eI~~ii~~f~~  156 (349)
T 3hgj_A           77 EDHLPGLKELARRIREAGAVPGIQLAHAGRKAGTARPWEGGKPLGWRVVGPSPIPFDEGYPVPEPLDEAGMERILQAFVE  156 (349)
T ss_dssp             GGGHHHHHHHHHHHHHTTCEEEEEEECCGGGCCBCCGGGTCCBCCCCCEESSSCCSSTTCCCCEECCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCCeEEEEeccCCccccccccccccccCCCcccCCCcccccCCCCCCccCCHHHHHHHHHHHHH
Confidence            355677888899999999888777765310  0                 000     0     1222       34455


Q ss_pred             HHHHHHhCCCCEEEEc-------------------cCcCcCC---HHHHHHHHHHHHhhCC-CCeEEEEeCCc-------
Q 015894          253 VSKQLYDMGCSEISLG-------------------DTIGVGT---PGTVIPMLEAVLDAVP-VDKLAVHFHDT-------  302 (398)
Q Consensus       253 ~a~~l~~~Gad~I~L~-------------------DT~G~~~---P~~v~~lv~~l~~~~p-~~~l~~H~Hnd-------  302 (398)
                      .++.+.++|.|.|-|-                   |-.|...   +.-+.++++++|+.++ +.+|++-..-+       
T Consensus       157 aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVR~avG~d~pV~vRls~~~~~~~g~  236 (349)
T 3hgj_A          157 GARRALRAGFQVIELHMAHGYLLSSFLSPLSNQRTDAYGGSLENRMRFPLQVAQAVREVVPRELPLFVRVSATDWGEGGW  236 (349)
T ss_dssp             HHHHHHHTTCCEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHSCTTSCEEEEEESCCCSTTSC
T ss_pred             HHHHHHHcCCCEEEECCccchHHHHhcCCcccccCCCCCcCHHHHHHHHHHHHHHHHHHhcCCceEEEEeccccccCCCC
Confidence            6777788999987663                   3344322   2346889999999985 56788866632       


Q ss_pred             -cchHHHHHHHHHHhCCCEEeeccccCC
Q 015894          303 -YGQALSNILASLQMGISTVDSSVSGLG  329 (398)
Q Consensus       303 -~GlA~ANalaAl~aGa~~VD~Sv~GlG  329 (398)
                       ..-++.-+...-++|++.|+++..+.-
T Consensus       237 ~~~~~~~la~~L~~~Gvd~i~vs~g~~~  264 (349)
T 3hgj_A          237 SLEDTLAFARRLKELGVDLLDCSSGGVV  264 (349)
T ss_dssp             CHHHHHHHHHHHHHTTCCEEEEECCCSC
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEecCCcC
Confidence             222333344445789999999976553

>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural genomics, PSI, protein structure initiative; 2.00A {Aquifex aeolicus} SCOP: c.1.10.1

Probab=88.24  E-value=9.6  Score=34.67  Aligned_cols=88  Identities=13%  Similarity=0.117  Sum_probs=53.1

Q ss_pred             ecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCc---CCHHHHHHHHHHHHhhCCCCeEEE--EeC-CccchHHHHH
Q 015894          237 VGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGV---GTPGTVIPMLEAVLDAVPVDKLAV--HFH-DTYGQALSNI  310 (398)
Q Consensus       237 fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p~~~l~~--H~H-nd~GlA~ANa  310 (398)
                      .+.|.... ..+.-..-++.+.+.|++.|-+.=-.|.   ..+..+.+.++++++..+.+.+-+  ..- -|......-+
T Consensus        60 ~~~P~g~~-~~~~k~~~~~~A~~~Gad~Id~viN~g~~~~~~~~~~~~~i~~v~~a~~pv~vKvi~e~~~l~~~~~~~~a  138 (225)
T 1mzh_A           60 IGFPLGLN-KTSVKVKEAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETPSAVHKVIVETPYLNEEEIKKAV  138 (225)
T ss_dssp             ESTTTCCS-CHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCTTSEEEEECCGGGCCHHHHHHHH
T ss_pred             ecCCCCcc-chhhhHHHHHHHHHcCCCEEEEEecHHHHhcCChHHHHHHHHHHHHHhcCceEEEEEeCCCCCHHHHHHHH
Confidence            34465432 2333334467788899999885333343   356788888999998774222322  111 1112245557


Q ss_pred             HHHHHhCCCEEeecc
Q 015894          311 LASLQMGISTVDSSV  325 (398)
Q Consensus       311 laAl~aGa~~VD~Sv  325 (398)
                      ..+.++||+.|.++-
T Consensus       139 ~~a~eaGad~I~tst  153 (225)
T 1mzh_A          139 EICIEAGADFIKTST  153 (225)
T ss_dssp             HHHHHHTCSEEECCC
T ss_pred             HHHHHhCCCEEEECC
Confidence            778899999997666

>3ayv_A Putative uncharacterized protein TTHB071; structural genomics, riken structural genomics/proteomics in RSGI, TIM barrel, unknown function; 1.85A {Thermus thermophilus} PDB: 3ayt_A

Probab=88.09  E-value=2.5  Score=38.27  Aligned_cols=127  Identities=17%  Similarity=0.129  Sum_probs=69.7

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC----CH----------------
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP----NL----------------  175 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~----n~----------------  175 (398)
                      ++...-.+.++.+.++|++ ||+.... +    .+.+..++.+..+...+ .+++..+    |.                
T Consensus         7 ~p~~~l~~~l~~~~~~G~~-vEl~~~~-~----~~~~~~~~~~~~~~~~~-~~~~h~~~~~~~l~~~~~~~r~~~~~~~~   79 (254)
T 3ayv_A            7 FPLSRAEEALPRLQALGLG-AEVYLDP-A----LLEEDALFQSLRRRFSG-KLSVHLPFWNLDLLSPDPEVRGLTLRRLL   79 (254)
T ss_dssp             EEGGGHHHHHHHHHHHTCE-EEEECCG-G----GTTCHHHHHHHHHHCCS-CEEEECCCTTCCTTCSSHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCC-EEEeccc-c----ccCcHHHHHHHHHHhCC-CeEEecCccCCCCCCCCHHHHHHHHHHHH
Confidence            3444556788888999999 9995321 1    11222233333343334 5555442    11                


Q ss_pred             hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 015894          176 KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSK  255 (398)
Q Consensus       176 ~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~  255 (398)
                      +.++.|.+.|++.|.+..............-..+...+.+.++.++|++.|+.+.  +..      ....+++.+.++++
T Consensus        80 ~~i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~--lEn------~~~~~~~~~~~l~~  151 (254)
T 3ayv_A           80 FGLDRAAELGADRAVFHSGIPHGRTPEEALERALPLAEALGLVVRRARTLGVRLL--LEN------SHEPHPEALRPVLE  151 (254)
T ss_dssp             HHHHHHHHTTCSEEEEECCCCTTCCHHHHHHTHHHHHHHTHHHHHHHHHHTCEEE--EEC------SSCSSGGGTHHHHH
T ss_pred             HHHHHHHHhCCCEEEECCCCCcccccccHHHHHHHHHHHHHHHHHHHhhcCCEEE--EcC------CCCCCHHHHHHHHH
Confidence            1245677899999988654321100000001244566777888899999998764  331      11236666667666


Q ss_pred             HH
Q 015894          256 QL  257 (398)
Q Consensus       256 ~l  257 (398)
                      .+
T Consensus       152 ~v  153 (254)
T 3ayv_A          152 AH  153 (254)
T ss_dssp             HH
T ss_pred             hc
Confidence            54

>2h9a_A Carbon monoxide dehydrogenase corrinoid/iron- sulfur protein, gamma subunit; heterodimer, beta-alpha-barrels, oxidoreductase; HET: B12; 1.90A {Carboxydothermus hydrogenoformans} PDB: 2ycl_A*

Probab=88.08  E-value=3.5  Score=41.95  Aligned_cols=154  Identities=12%  Similarity=0.131  Sum_probs=94.1

Q ss_pred             CCEEEEecCCCCCcccCCCCHHHHHHHHHh---ccCCcEEEEeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHH
Q 015894          133 LAVVEATSFVSPKWVPQLADAKDVMAAIQN---VEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIE  209 (398)
Q Consensus       133 v~~IEvG~~~~~~~~p~~~D~~~v~~~i~~---~~~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~  209 (398)
                      +|.|.+++..        .|++.+...++.   ..+..++.. .+.+-++.+++.|.+.=-+..+++.            
T Consensus       128 aD~I~l~~~~--------~dpe~~~~~Vk~V~e~~dvPlsID-~dp~vleaale~~~d~~pLIns~t~------------  186 (445)
T 2h9a_A          128 VNLVALKGSS--------QDAATFAKAVATAREVTDLPFILI-GTPEQLAAALETEGANNPLLYAATA------------  186 (445)
T ss_dssp             CCEEEEECTT--------CCHHHHHHHHHHHHHHCCSCEEEE-SCHHHHHHHHHHHGGGCCEEEEECT------------
T ss_pred             CcEEEEeCCC--------CCHHHHHHHHHHHHHhcCCCEEEE-CCHHHHHHHHHhcCCCCCEEEECCH------------
Confidence            8889998732        355555555553   346677766 8888899999988762222223332            


Q ss_pred             HHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhh
Q 015894          210 DSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDA  289 (398)
Q Consensus       210 ~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~  289 (398)
                         +++.++...|++.|..|.+     .+ +     +.+.+.++.+.+.++|.+.|.| |... ..-....+-+..+|+.
T Consensus       187 ---en~~~~~~la~~y~~~vV~-----~~-~-----~l~~l~~lv~~a~~~Gi~~IiL-DP~~-~~~~~sl~~~~~IR~~  250 (445)
T 2h9a_A          187 ---DNYEQMVELAKKYNVPLTV-----SA-K-----GLDALAELVQKITALGYKNLIL-DPQP-ENISEGLFYQTQIRRL  250 (445)
T ss_dssp             ---TTHHHHHHHHHHHTCCEEE-----EC-S-----SHHHHHHHHHHHHHTTCCCEEE-ECCC-SSHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHHhCCeEEE-----Ec-C-----CHHHHHHHHHHHHHCCCCcEEE-cCCc-hhHHHHHHHHHHHHHh
Confidence               2345667888899988753     21 1     5788999999999999987664 5442 2233444455555554


Q ss_pred             C---CCC-----eEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          290 V---PVD-----KLAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       290 ~---p~~-----~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      .   ++.     -+..-..-+--+-...+..++..|++++=+
T Consensus       251 al~~~d~~lg~P~i~~vs~~d~~~ea~lA~~~~~~GasIl~~  292 (445)
T 2h9a_A          251 AIKKLFRPFGYPTIAFALDENPYQAVMEASVYIAKYAGIIVL  292 (445)
T ss_dssp             HHHSCCGGGCSCBEEECCCSSHHHHHHHHHHHHHTTCSEEEE
T ss_pred             hhcCCCcccCCCeeecCCchhHHHHHHHHHHHHHcCCeEEEe
Confidence            1   221     133333323225555555568999997744

>1qwg_A PSL synthase;, (2R)-phospho-3-sulfolactate synthase; beta-alpha-barrel, lyase; 1.60A {Methanocaldococcus jannaschii} SCOP: c.1.27.1

Probab=87.99  E-value=4.1  Score=38.26  Aligned_cols=171  Identities=16%  Similarity=0.096  Sum_probs=100.9

Q ss_pred             HHHHHHHhcC--CCEEEEecCCCCCcccCCCCHHHHHHHHHhc--cCCcEEE--------EeCC-Hhh-HHHHHHcCCCE
Q 015894          123 ELIKLLVSSG--LAVVEATSFVSPKWVPQLADAKDVMAAIQNV--EGARFPV--------LTPN-LKG-FEAAVAAGAKE  188 (398)
Q Consensus       123 ~ia~~L~~aG--v~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~--~~~~l~~--------l~~n-~~~-ie~a~~~Gv~~  188 (398)
                      .+-..|.-+|  ||.+-+|+..+.     +.+.+.+.+.+...  -++.+..        +.++ .++ ++.+.+.|.+.
T Consensus        27 ~~~d~Le~~g~yID~lKfg~Gt~~-----l~~~~~l~eki~l~~~~gV~v~~GGTl~E~~~~qg~~~~yl~~~k~lGf~~  101 (251)
T 1qwg_A           27 FVEDYLKVCGDYIDFVKFGWGTSA-----VIDRDVVKEKINYYKDWGIKVYPGGTLFEYAYSKGKFDEFLNECEKLGFEA  101 (251)
T ss_dssp             HHHHHHHHHGGGCSEEEECTTGGG-----GSCHHHHHHHHHHHHTTTCEEEECHHHHHHHHHTTCHHHHHHHHHHHTCCE
T ss_pred             HHHHHHHHhhhhcceEEecCceee-----ecCHHHHHHHHHHHHHcCCeEECCcHHHHHHHHcCcHHHHHHHHHHcCCCE
Confidence            3445556666  888999875431     12233344444322  2333221        1233 223 57788899999


Q ss_pred             EEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCC---CCCCCHHHHHHHHHHHHhCCCCEE
Q 015894          189 VAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPV---EGMVPPSKVAYVSKQLYDMGCSEI  265 (398)
Q Consensus       189 v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~---~~r~~~~~l~~~a~~l~~~Gad~I  265 (398)
                      |-|....-+.        +.    +.-.+.|+.+++.|++|-..    +|.-+   ....+++.+.+.++.-.++||+.|
T Consensus       102 iEiS~G~i~l--------~~----~~~~~~I~~~~~~G~~v~~E----vG~k~~~~~~~~~~~~~I~~~~~~LeAGA~~V  165 (251)
T 1qwg_A          102 VEISDGSSDI--------SL----EERNNAIKRAKDNGFMVLTE----VGKKMPDKDKQLTIDDRIKLINFDLDAGADYV  165 (251)
T ss_dssp             EEECCSSSCC--------CH----HHHHHHHHHHHHTTCEEEEE----ECCSSHHHHTTCCHHHHHHHHHHHHHHTCSEE
T ss_pred             EEECCCcccC--------CH----HHHHHHHHHHHHCCCEEeee----ccccCCcccCCCCHHHHHHHHHHHHHCCCcEE
Confidence            9997664332        22    33346789999999998533    34322   245789999999999999999876


Q ss_pred             E-----------EccCcCcCCHHHHHHHHHH------------------HHhhC-CCCeEEEEeCCccchHHHHHHHHHH
Q 015894          266 S-----------LGDTIGVGTPGTVIPMLEA------------------VLDAV-PVDKLAVHFHDTYGQALSNILASLQ  315 (398)
Q Consensus       266 ~-----------L~DT~G~~~P~~v~~lv~~------------------l~~~~-p~~~l~~H~Hnd~GlA~ANalaAl~  315 (398)
                      .           |.|..|......+..+++.                  +.+++ |++.|+.=.|++     .-+|++++
T Consensus       166 iiEarEsG~~iGi~~~~g~~r~d~v~~i~~~l~~eklifEAp~k~qq~~fI~~fG~~VNLgNI~~~e-----Vi~LE~LR  240 (251)
T 1qwg_A          166 IIEGRESGKGKGLFDKEGKVKENELDVLAKNVDINKVIFEAPQKSQQVAFILKFGSSVNLANIAFDE-----VISLETLR  240 (251)
T ss_dssp             EECCTTTCCSSTTBCTTSCBCHHHHHHHHTTSCGGGEEEECCSHHHHHHHHHHHCTTCCEEEEEGGG-----HHHHHHHH
T ss_pred             EEeeecccCCcccCCCCCCCcHHHHHHHHHhCChhhEEEECCChHHHHHHHHHhCCCccccCCCHHH-----HHHHHHHH
Confidence            4           4455566666666555431                  22223 566665434433     44566777


Q ss_pred             hCCC
Q 015894          316 MGIS  319 (398)
Q Consensus       316 aGa~  319 (398)
                      .|-+
T Consensus       241 ~GLr  244 (251)
T 1qwg_A          241 RGLR  244 (251)
T ss_dssp             HTCS
T ss_pred             cccc
Confidence            6654

>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A

Probab=87.99  E-value=8.5  Score=36.42  Aligned_cols=76  Identities=12%  Similarity=0.135  Sum_probs=35.3

Q ss_pred             HHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC-CCCE--EEEccCcCcC-CHHHHHHHHHHHHhhCCC
Q 015894          217 DVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM-GCSE--ISLGDTIGVG-TPGTVIPMLEAVLDAVPV  292 (398)
Q Consensus       217 ~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~-Gad~--I~L~DT~G~~-~P~~v~~lv~~l~~~~p~  292 (398)
                      +.++.|++.|.....-+     .|.-.+.+.+.+.+..+.+.+. +...  -.++...|.- +|+.+.+    +. ..|+
T Consensus        87 ~la~~a~~~Gadavlv~-----~P~y~~~~~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~----La-~~pn  156 (291)
T 3tak_A           87 ELTKAAKDLGADAALLV-----TPYYNKPTQEGLYQHYKAIAEAVELPLILYNVPGRTGVDLSNDTAVR----LA-EIPN  156 (291)
T ss_dssp             HHHHHHHHHTCSEEEEE-----CCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHHH----HT-TSTT
T ss_pred             HHHHHHHhcCCCEEEEc-----CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEecccccCCCCCHHHHHH----HH-cCCC
Confidence            44566666676543111     3443445566666655555442 4333  2344444543 3333333    22 3565


Q ss_pred             CeEEE-EeCCcc
Q 015894          293 DKLAV-HFHDTY  303 (398)
Q Consensus       293 ~~l~~-H~Hnd~  303 (398)
                      + +++ ..+.|.
T Consensus       157 i-vgiK~ssgd~  167 (291)
T 3tak_A          157 I-VGIKDATGDV  167 (291)
T ss_dssp             E-EEEEECSCCH
T ss_pred             E-EEEEeCCCCH
Confidence            3 555 344444

>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0

Probab=87.95  E-value=13  Score=35.30  Aligned_cols=14  Identities=21%  Similarity=0.138  Sum_probs=8.4

Q ss_pred             CCCccHHHHHHHHH
Q 015894          338 SGNVATEDVVYMLN  351 (398)
Q Consensus       338 aGNa~lE~vv~~L~  351 (398)
                      ++|..-+.++...+
T Consensus       212 ~an~~P~~~~~l~~  225 (297)
T 3flu_A          212 AANAAPKLFADMCR  225 (297)
T ss_dssp             GGGTCHHHHHHHHH
T ss_pred             hHhhhHHHHHHHHH
Confidence            55666666665554

>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5

Probab=87.94  E-value=4.1  Score=36.41  Aligned_cols=71  Identities=13%  Similarity=0.267  Sum_probs=51.4

Q ss_pred             HHHHHhCCCCEEEEccCcCcCCH-HHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCC
Q 015894          254 SKQLYDMGCSEISLGDTIGVGTP-GTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGG  330 (398)
Q Consensus       254 a~~l~~~Gad~I~L~DT~G~~~P-~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGe  330 (398)
                      ++.+.++|++.|.+- +.-...| ..+.++++.+++.+|+.++.+-.|+     ...+..+.++|++.|-++..|...
T Consensus        81 i~~~~~~Gad~v~l~-~~~~~~p~~~~~~~i~~~~~~~~~~~v~~~~~t-----~~e~~~~~~~G~d~i~~~~~g~t~  152 (223)
T 1y0e_A           81 VDELIESQCEVIALD-ATLQQRPKETLDELVSYIRTHAPNVEIMADIAT-----VEEAKNAARLGFDYIGTTLHGYTS  152 (223)
T ss_dssp             HHHHHHHTCSEEEEE-CSCSCCSSSCHHHHHHHHHHHCTTSEEEEECSS-----HHHHHHHHHTTCSEEECTTTTSST
T ss_pred             HHHHHhCCCCEEEEe-eecccCcccCHHHHHHHHHHhCCCceEEecCCC-----HHHHHHHHHcCCCEEEeCCCcCcC
Confidence            455678999998774 3323345 5778999999999888777776664     345667889999999776665543

>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A

Probab=87.93  E-value=1.7  Score=39.92  Aligned_cols=71  Identities=14%  Similarity=0.109  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEE--eCCHhhHHHHHHcCCCEEEEe
Q 015894          120 VKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVL--TPNLKGFEAAVAAGAKEVAIF  192 (398)
Q Consensus       120 ~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l--~~n~~~ie~a~~~Gv~~v~i~  192 (398)
                      +-+++++.+.+.|++.|-+.-...... ....+. ++++.+++..++.+.+-  .++.++++.+++.|++.|.+-
T Consensus        36 ~~~~~a~~~~~~G~~~i~v~d~~~~~~-~~~~~~-~~i~~i~~~~~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig  108 (247)
T 3tdn_A           36 LLRDWVVEVEKRGAGEILLTSIDRDGT-KSGYDT-EMIRFVRPLTTLPIIASGGAGKMEHFLEAFLRGADKVSIN  108 (247)
T ss_dssp             EHHHHHHHHHHTTCSEEEEEETTTTTC-SSCCCH-HHHHHHGGGCCSCEEEESCCCSHHHHHHHHHTTCSEECCS
T ss_pred             CHHHHHHHHHHcCCCEEEEEecCcccC-CCcccH-HHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHcCCCeeehh
Confidence            457899999999999998864321110 011233 34445554335554443  357889999999999998874

>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A

Probab=87.92  E-value=15  Score=36.13  Aligned_cols=126  Identities=19%  Similarity=0.192  Sum_probs=73.1

Q ss_pred             HHHHHHHHhcCCCEEEEecCC-CCCcccCCCCHHHHHHHHH-hccCCcEEE-EeCCHhhHHHHHHcCCCEEEEeccC-c-
Q 015894          122 VELIKLLVSSGLAVVEATSFV-SPKWVPQLADAKDVMAAIQ-NVEGARFPV-LTPNLKGFEAAVAAGAKEVAIFASA-S-  196 (398)
Q Consensus       122 ~~ia~~L~~aGv~~IEvG~~~-~~~~~p~~~D~~~v~~~i~-~~~~~~l~~-l~~n~~~ie~a~~~Gv~~v~i~~~~-S-  196 (398)
                      .+.++.|.++|++.|++.... .++      ...+.++.++ ..|+..+.+ -+.+.++.+.+.++|+|.|.+.... + 
T Consensus       110 ~~~~~~lieaGvd~I~idta~G~~~------~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~aGAD~I~vG~gpGs~  183 (366)
T 4fo4_A          110 EERVKALVEAGVDVLLIDSSHGHSE------GVLQRIRETRAAYPHLEIIGGNVATAEGARALIEAGVSAVKVGIGPGSI  183 (366)
T ss_dssp             HHHHHHHHHTTCSEEEEECSCTTSH------HHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHHHTCSEEEECSSCSTT
T ss_pred             HHHHHHHHhCCCCEEEEeCCCCCCH------HHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHHcCCCEEEEecCCCCC
Confidence            566888999999999985422 211      1122333444 345665543 3567888999999999999983111 1 


Q ss_pred             -hHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcc
Q 015894          197 -ESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGD  269 (398)
Q Consensus       197 -d~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~D  269 (398)
                       -.+.....+..   .+..+.++.+.+++.+++|.+         +.+-.++..+.+    +.++||+.+.+.-
T Consensus       184 ~~tr~~~g~g~p---~~~~l~~v~~~~~~~~iPVIA---------~GGI~~~~di~k----ala~GAd~V~vGs  241 (366)
T 4fo4_A          184 CTTRIVTGVGVP---QITAIADAAGVANEYGIPVIA---------DGGIRFSGDISK----AIAAGASCVMVGS  241 (366)
T ss_dssp             BCHHHHHCCCCC---HHHHHHHHHHHHGGGTCCEEE---------ESCCCSHHHHHH----HHHTTCSEEEEST
T ss_pred             CCcccccCcccc---hHHHHHHHHHHHhhcCCeEEE---------eCCCCCHHHHHH----HHHcCCCEEEECh
Confidence             01111112222   244455666666677887742         234345655443    4458999887753

>3u0h_A Xylose isomerase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, TIM barrel; 2.30A {Alicyclobacillus acidocaldarius subsp}

Probab=87.77  E-value=1.6  Score=39.76  Aligned_cols=200  Identities=16%  Similarity=0.061  Sum_probs=0.0

Q ss_pred             HHHHHHHhcCCCEEEEecCCC----CCcccCCCCHHHHHHHHHhccCCcEEEEeCC-----------------HhhHHHH
Q 015894          123 ELIKLLVSSGLAVVEATSFVS----PKWVPQLADAKDVMAAIQNVEGARFPVLTPN-----------------LKGFEAA  181 (398)
Q Consensus       123 ~ia~~L~~aGv~~IEvG~~~~----~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n-----------------~~~ie~a  181 (398)
                      +.++.+.++|++.||+.....    ..     .+.+++.+.+++ .+.++.++...                 .+.++.|
T Consensus        20 ~~l~~~~~~G~~~vEl~~~~~~~~~~~-----~~~~~~~~~l~~-~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~A   93 (281)
T 3u0h_A           20 LYLDLARETGYRYVDVPFHWLEAEAER-----HGDAAVEAMFQR-RGLVLANLGLPLNLYDSEPVFLRELSLLPDRARLC   93 (281)
T ss_dssp             HHHHHHHHTTCSEECCCHHHHHHHHHH-----HCHHHHHHHHHT-TTCEECCEECCSCTTSCHHHHHHHHHTHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEecHHHHHHHhcc-----cCHHHHHHHHHH-cCCceEEecccccccCCCHHHHHHHHHHHHHHHHH


Q ss_pred             HHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEee----eecCCCCCCCCHHHHHHHHHHH
Q 015894          182 VAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSC----VVGCPVEGMVPPSKVAYVSKQL  257 (398)
Q Consensus       182 ~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~----~fg~~~~~r~~~~~l~~~a~~l  257 (398)
                      .+.|++.|.+.+..........   ..+...+.+.++.++|++.|+.+...-..    .+. +...-.+++.+.++++.+
T Consensus        94 ~~lG~~~v~~~~~p~~~~~~~~---~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~~~~~~~~-~~~~~~~~~~~~~l~~~v  169 (281)
T 3u0h_A           94 ARLGARSVTAFLWPSMDEEPVR---YISQLARRIRQVAVELLPLGMRVGLEYVGPHHLRHR-RYPFVQSLADLKTFWEAI  169 (281)
T ss_dssp             HHTTCCEEEEECCSEESSCHHH---HHHHHHHHHHHHHHHHGGGTCEEEEECCCCGGGCCS-SEECCCSHHHHHHHHHHH
T ss_pred             HHcCCCEEEEeecCCCCCcchh---hHHHHHHHHHHHHHHHHHcCCEEEEEeccccccccc-cccccCCHHHHHHHHHHc


Q ss_pred             HhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCC
Q 015894          258 YDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGA  337 (398)
Q Consensus       258 ~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~gr  337 (398)
                         +.+.+.++==+|.+.-..  .-+..+.+.+.+--.++|++|..+..           -+..+..-.-+|+       
T Consensus       170 ---~~~~vg~~~D~~h~~~~g--~~~~~~~~~~~~~i~~vHl~D~~~~~-----------~~~~~~~~~~~G~-------  226 (281)
T 3u0h_A          170 ---GAPNVGALVDSYHWYTAG--EHEDDLAQLPPEKVVYVHINDTRDAP-----------EDAHDGKRLLPGD-------  226 (281)
T ss_dssp             ---CCTTEEEEEEHHHHHHTT--CCHHHHHTSCGGGEEEEEECBCSSCT-----------TTCCTTSCBCTTS-------
T ss_pred             ---CCCCeeEEeehhHHHHcC--CCHHHHHhcCcccEEEEEecCCCCCc-----------ccchhccCcCCCC-------


Q ss_pred             CCCccHHHHHHHHHhCCCC
Q 015894          338 SGNVATEDVVYMLNGLGVR  356 (398)
Q Consensus       338 aGNa~lE~vv~~L~~~Gi~  356 (398)
                       |..+...++..|++.|++
T Consensus       227 -G~id~~~~~~~L~~~gy~  244 (281)
T 3u0h_A          227 -GRIPLVPFLRGLYLAGYR  244 (281)
T ss_dssp             -SSSCHHHHHHHHHHHTCC
T ss_pred             -cCcCHHHHHHHHHHcCCC

>3pm6_A Putative fructose-bisphosphate aldolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.20A {Coccidioides immitis}

Probab=87.71  E-value=2.4  Score=41.08  Aligned_cols=117  Identities=15%  Similarity=0.061  Sum_probs=77.7

Q ss_pred             HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEccCcCcCCHHHHHHHHHHHHhhCCCC
Q 015894          215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGDTIGVGTPGTVIPMLEAVLDAVPVD  293 (398)
Q Consensus       215 ~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~DT~G~~~P~~v~~lv~~l~~~~p~~  293 (398)
                      .+++.+.|++.|+-|-+ +.         -.+.+.+..+++.+.+.+... |.+.-...-..+..+...+..+.+++ .+
T Consensus        15 ~~~ll~~A~~~~yAV~A-fN---------v~n~e~~~Avl~AAee~~sPvIlq~s~g~~~y~g~~~~~~~~~~A~~~-~V   83 (306)
T 3pm6_A           15 ALPLLTFARTHSFAIPA-IC---------VYNLEGILAIIRAAEHKRSPAMILLFPWAIQYADSLLVRTAASACRAA-SV   83 (306)
T ss_dssp             SHHHHHHHHHTTCCEEE-EE---------CSSHHHHHHHHHHHHHTTCCEEEEECHHHHHHHTTHHHHHHHHHHHHC-SS
T ss_pred             HHHHHHHHHHCCcEEEE-Ee---------eCCHHHHHHHHHHHHHhCCCEEEEcChhHHhhccHHHHHHHHHHHHHC-CC
Confidence            45678899999998742 22         136788999999999999885 44432111111223344455555554 35


Q ss_pred             eEEEEeCCccchHHHHHHHHHHh--------CCC--EEeeccccCCCCCCCCCCCCCc-cHHHHHHHHHhC
Q 015894          294 KLAVHFHDTYGQALSNILASLQM--------GIS--TVDSSVSGLGGCPYAKGASGNV-ATEDVVYMLNGL  353 (398)
Q Consensus       294 ~l~~H~Hnd~GlA~ANalaAl~a--------Ga~--~VD~Sv~GlGecp~a~graGNa-~lE~vv~~L~~~  353 (398)
                      |+.+|.  |.|.....+..|+++        |.+  ++|+|-..+-+         |. -|.+++...+..
T Consensus        84 PVaLHl--DHg~~~e~i~~ai~~~~~~~~~~GFtSVMiDgS~~p~eE---------Ni~~Tk~vv~~ah~~  143 (306)
T 3pm6_A           84 PITLHL--DHAQDPEIIKRAADLSRSETHEPGFDSIMVDMSHFSKEE---------NLRLTRELVAYCNAR  143 (306)
T ss_dssp             CEEEEE--EEECCHHHHHHHHHTC------CCCSEEEECCTTSCHHH---------HHHHHHHHHHHHHTT
T ss_pred             CEEEEc--CCCCCHHHHHHHHHhhhhccCCCCCCEEEEeCCCCCHHH---------HHHHHHHHHHHHHHc
Confidence            677665  555556678999999        998  77999998877         65 566777777643

>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A

Probab=87.70  E-value=2.4  Score=40.86  Aligned_cols=82  Identities=16%  Similarity=0.050  Sum_probs=68.8

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcCc---CCHHHHHHHHHHHHhhC-CCCeEEEEe-CCccchHHHHHHHHHHhC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGV---GTPGTVIPMLEAVLDAV-PVDKLAVHF-HDTYGQALSNILASLQMG  317 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~-p~~~l~~H~-Hnd~GlA~ANalaAl~aG  317 (398)
                      +..|.+.+.++++.+.+.|++.|.++-|.|=   +++++-.++++.+.+.. ..++|-++. +|+..-++..+..|-++|
T Consensus        39 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~st~eai~la~~A~~~G  118 (314)
T 3qze_A           39 GRLDWDSLAKLVDFHLQEGTNAIVAVGTTGESATLDVEEHIQVIRRVVDQVKGRIPVIAGTGANSTREAVALTEAAKSGG  118 (314)
T ss_dssp             SCBCHHHHHHHHHHHHHHTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHHcC
Confidence            5789999999999999999999999999996   56788888888887765 345677764 688999999999999999


Q ss_pred             CCEEeec
Q 015894          318 ISTVDSS  324 (398)
Q Consensus       318 a~~VD~S  324 (398)
                      |+.+=+.
T Consensus       119 adavlv~  125 (314)
T 3qze_A          119 ADACLLV  125 (314)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEc
Confidence            9977554

>1ub3_A Aldolase protein; schiff base, deoxyribose phosphate, carbinolamine, structural genomics, riken structural genomics/proteomics initiative; HET: HPD; 1.40A {Thermus thermophilus} SCOP: c.1.10.1 PDB: 1j2w_A*

Probab=87.62  E-value=8.4  Score=35.27  Aligned_cols=107  Identities=21%  Similarity=0.236  Sum_probs=69.7

Q ss_pred             eeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcC---CHHHHHHHHHHHHhhCCC--Ce--EEEEeCCccchH
Q 015894          234 SCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVG---TPGTVIPMLEAVLDAVPV--DK--LAVHFHDTYGQA  306 (398)
Q Consensus       234 ~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~---~P~~v~~lv~~l~~~~p~--~~--l~~H~Hnd~GlA  306 (398)
                      +.+.|.|.. ..+.+....-++.+.+.|||.|-+.=-.|.+   .-..+.+-+..+++..+.  ++  |+.-..++--. 
T Consensus        58 ~~vigFP~G-~~~~~~k~~e~~~Ai~~GAdevd~vinig~~~~g~~~~v~~ei~~v~~a~~~~~lkvIlet~~l~~e~i-  135 (220)
T 1ub3_A           58 VTVVGFPLG-YQEKEVKALEAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGYFSPEEI-  135 (220)
T ss_dssp             EEEESTTTC-CSCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGSCHHHH-
T ss_pred             EEEecCCCC-CCchHHHHHHHHHHHHcCCCEEEecccchhhhCCCHHHHHHHHHHHHHHHcCCCceEEEecCCCCHHHH-
Confidence            333455654 3455655556788889999999887777754   567788888888876532  22  33333343333 


Q ss_pred             HHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q 015894          307 LSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLN  351 (398)
Q Consensus       307 ~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~  351 (398)
                      .-.+..|.++|||+|=+|- |.        .+|++..|++-.+.+
T Consensus       136 ~~a~~ia~eaGADfVKTsT-Gf--------~~~gat~~dv~~m~~  171 (220)
T 1ub3_A          136 ARLAEAAIRGGADFLKTST-GF--------GPRGASLEDVALLVR  171 (220)
T ss_dssp             HHHHHHHHHHTCSEEECCC-SS--------SSCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCEEEeCC-CC--------CCCCCCHHHHHHHHH
Confidence            3456677899999999986 22        235677777776665

>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A

Probab=87.62  E-value=11  Score=36.17  Aligned_cols=15  Identities=20%  Similarity=0.248  Sum_probs=9.3

Q ss_pred             CCCccHHHHHHHHHh
Q 015894          338 SGNVATEDVVYMLNG  352 (398)
Q Consensus       338 aGNa~lE~vv~~L~~  352 (398)
                      ++|..-+.++...+.
T Consensus       228 ~an~~P~~~~~l~~a  242 (314)
T 3qze_A          228 TANVAPRAMSDLCAA  242 (314)
T ss_dssp             GGGTCHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHH
Confidence            556666766665553

>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5

Probab=87.60  E-value=1.4  Score=39.91  Aligned_cols=72  Identities=19%  Similarity=0.202  Sum_probs=52.1

Q ss_pred             HHHHHHHhCCCCEEEEccCcCcCCH--HHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCC
Q 015894          252 YVSKQLYDMGCSEISLGDTIGVGTP--GTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLG  329 (398)
Q Consensus       252 ~~a~~l~~~Gad~I~L~DT~G~~~P--~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlG  329 (398)
                      +.++.+.++|++.|.+-=. -...|  ..+.++++.+++.+|+.++.+-.|+-     ..+..+.++|+++|..++.|+.
T Consensus        92 ~~i~~~~~~Gad~V~l~~~-~~~~~~~~~~~~~i~~i~~~~~~~~v~~~~~t~-----~ea~~a~~~Gad~i~~~v~g~~  165 (234)
T 1yxy_A           92 TEVDQLAALNIAVIAMDCT-KRDRHDGLDIASFIRQVKEKYPNQLLMADISTF-----DEGLVAHQAGIDFVGTTLSGYT  165 (234)
T ss_dssp             HHHHHHHTTTCSEEEEECC-SSCCTTCCCHHHHHHHHHHHCTTCEEEEECSSH-----HHHHHHHHTTCSEEECTTTTSS
T ss_pred             HHHHHHHHcCCCEEEEccc-ccCCCCCccHHHHHHHHHHhCCCCeEEEeCCCH-----HHHHHHHHcCCCEEeeeccccC
Confidence            3466778899998865322 12234  35688999999988877787777752     3478899999999976777763

>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A

Probab=87.59  E-value=3.6  Score=39.39  Aligned_cols=82  Identities=15%  Similarity=0.167  Sum_probs=68.6

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcC---cCCHHHHHHHHHHHHhhCC-CCeEEEEe-CCccchHHHHHHHHHHhC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIG---VGTPGTVIPMLEAVLDAVP-VDKLAVHF-HDTYGQALSNILASLQMG  317 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~lv~~l~~~~p-~~~l~~H~-Hnd~GlA~ANalaAl~aG  317 (398)
                      +..|.+.+.++++.+.+.|++.|.++-|.|   .+++++-.++++.+.+... .++|-++. +|+..-++..+..|-++|
T Consensus        27 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~G  106 (303)
T 2wkj_A           27 QALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYG  106 (303)
T ss_dssp             SSBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECeeccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhCC
Confidence            578999999999999999999999999998   5678888888888887653 46777765 567788899999999999


Q ss_pred             CCEEeec
Q 015894          318 ISTVDSS  324 (398)
Q Consensus       318 a~~VD~S  324 (398)
                      |+.+=+.
T Consensus       107 adavlv~  113 (303)
T 2wkj_A          107 FDAVSAV  113 (303)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEec
Confidence            9977554

>1fob_A Beta-1,4-galactanase; B/A barrel, glycosyl hydrolase, family 53, CLAN GH-A; 1.80A {Aspergillus aculeatus} SCOP: c.1.8.3 PDB: 1fhl_A

Probab=87.58  E-value=8.6  Score=37.12  Aligned_cols=144  Identities=15%  Similarity=0.053  Sum_probs=80.1

Q ss_pred             hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeee--ecCCCC------CC-CC
Q 015894          176 KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCV--VGCPVE------GM-VP  246 (398)
Q Consensus       176 ~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~--fg~~~~------~r-~~  246 (398)
                      ++++.+.++|+..||+-+-+++.     -+.   ..++.+.++++.||++|++|...+-+.  +..|-.      -. .+
T Consensus        31 ~~~~ilk~~G~n~vRlri~v~P~-----~g~---~d~~~~~~~~~~ak~~Gl~v~ld~hysd~wadP~~q~~p~~W~~~~  102 (334)
T 1fob_A           31 ALETILADAGINSIRQRVWVNPS-----DGS---YDLDYNLELAKRVKAAGMSLYLDLHLSDTWADPSDQTTPSGWSTTD  102 (334)
T ss_dssp             CHHHHHHHHTCCEEEEEECSCCT-----TCT---TCHHHHHHHHHHHHHTTCEEEEEECCSSSCCBTTBCBCCTTSCSSC
T ss_pred             hHHHHHHHcCCCEEEEEEEECCC-----CCc---cCHHHHHHHHHHHHHCCCEEEEEeccCCCCCCcccccCccccccCC
Confidence            46778889999998885443332     011   126677888999999999987655321  222210      00 12


Q ss_pred             H--------HHHHHHHHHHHhCC--CCEEEEcc--CcCcCC-------HHHHHHH----HHHHHhhC--CCCeEEEEeCC
Q 015894          247 P--------SKVAYVSKQLYDMG--CSEISLGD--TIGVGT-------PGTVIPM----LEAVLDAV--PVDKLAVHFHD  301 (398)
Q Consensus       247 ~--------~~l~~~a~~l~~~G--ad~I~L~D--T~G~~~-------P~~v~~l----v~~l~~~~--p~~~l~~H~Hn  301 (398)
                      .        ++..++++.+.+.|  ++.+.+..  +.|.+-       ...+..+    ++++|+..  |..++.+|+.+
T Consensus       103 ~~~~~~~~~~yt~~v~~~l~~~g~~v~~v~vGNE~~~G~lwp~g~~~~~~~l~~~~~~a~~avr~~~~~p~~~v~~h~~~  182 (334)
T 1fob_A          103 LGTLKWQLYNYTLEVCNTFAENDIDIEIISIGNEIRAGLLWPLGETSSYSNIGALLHSGAWGVKDSNLATTPKIMIHLDD  182 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTTCCCSEEEESSSGGGCSSBTTTSTTCHHHHHHHHHHHHHHHHTSCCSSCCEEEEEESC
T ss_pred             hHHHHHHHHHHHHHHHHHHHhCCCCCCEEEEeecCcccccCCCCcchhHHHHHHHHHHHHHHHHHhccCCCCeEEEEcCC
Confidence            2        12334556666666  56775554  234442       2344443    34577777  87789999987


Q ss_pred             ccchHHHH--HHHHHHhC------CCEEeecccc
Q 015894          302 TYGQALSN--ILASLQMG------ISTVDSSVSG  327 (398)
Q Consensus       302 d~GlA~AN--alaAl~aG------a~~VD~Sv~G  327 (398)
                      -...+.-+  ...+...|      .|+|-.+...
T Consensus       183 ~~~~~~~~~~~~~~~~~g~~~~~~~DvIG~syYp  216 (334)
T 1fob_A          183 GWSWDQQNYFYETVLATGELLSTDFDYFGVSYYP  216 (334)
T ss_dssp             TTCHHHHHHHHHHHHHTSSSCGGGCCEEEEECCS
T ss_pred             cCchHHHHHHHHHHHHcCCCCCCCcCEEEEeCCC
Confidence            32211111  12234556      3666666554

>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}

Probab=87.56  E-value=14  Score=33.33  Aligned_cols=219  Identities=14%  Similarity=0.131  Sum_probs=114.1

Q ss_pred             ccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCC--Cc---c-cCCCCH---HHHHHHHHhccCCc
Q 015894           97 FVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSP--KW---V-PQLADA---KDVMAAIQNVEGAR  167 (398)
Q Consensus        97 ~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~--~~---~-p~~~D~---~~v~~~i~~~~~~~  167 (398)
                      ++-+.--|+|+        ++   -.+.++.+.++|++.||+......  .+   . +...+.   +++.+.++ -.+++
T Consensus        11 klg~~~~~~~~--------~~---~~~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gl~   78 (262)
T 3p6l_A           11 RLGMQSYSFHL--------FP---LTEALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDAQTQKEIKELAA-SKGIK   78 (262)
T ss_dssp             EEEEEGGGGTT--------SC---HHHHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCHHHHHHHHHHHH-HTTCE
T ss_pred             EEEEEecccCC--------CC---HHHHHHHHHHcCCCEEeecCCcccccccccccccccCCHHHHHHHHHHHH-HcCCe
Confidence            46666667765        23   345777888999999999753210  00   0 111222   33333333 23666


Q ss_pred             EEEEeC----CH----hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecC
Q 015894          168 FPVLTP----NL----KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGC  239 (398)
Q Consensus       168 l~~l~~----n~----~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~  239 (398)
                      +.++..    ..    +.++.|.+.|++.|.+... .             +.   +..+.++|++.|+.+.  +...   
T Consensus        79 i~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~~~~-~-------------~~---~~~l~~~a~~~gv~l~--~En~---  136 (262)
T 3p6l_A           79 IVGTGVYVAEKSSDWEKMFKFAKAMDLEFITCEPA-L-------------SD---WDLVEKLSKQYNIKIS--VHNH---  136 (262)
T ss_dssp             EEEEEEECCSSTTHHHHHHHHHHHTTCSEEEECCC-G-------------GG---HHHHHHHHHHHTCEEE--EECC---
T ss_pred             EEEEeccCCccHHHHHHHHHHHHHcCCCEEEecCC-H-------------HH---HHHHHHHHHHhCCEEE--EEeC---
Confidence            666542    22    3467788899999998632 1             12   3466788899998764  3321   


Q ss_pred             CCCCC-CCHHHHHHHHHHHHhCCCCEE-EEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhC
Q 015894          240 PVEGM-VPPSKVAYVSKQLYDMGCSEI-SLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMG  317 (398)
Q Consensus       240 ~~~~r-~~~~~l~~~a~~l~~~Gad~I-~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aG  317 (398)
                      +.... .+++.+.++++   + +.+.+ ..-||.=...-.  .+....+++ +.+--.++|++|..--.         .|
T Consensus       137 ~~~~~~~~~~~~~~ll~---~-~~~~~g~~~D~~h~~~~g--~d~~~~l~~-~~~~i~~vH~~D~~~~~---------~~  200 (262)
T 3p6l_A          137 PQPSDYWKPENLLKAIS---G-RSQSLGSCSDVGHWRREG--LNQIDCLKQ-LKGRIISLHFKDIAPKK---------AG  200 (262)
T ss_dssp             SSSSSSSSHHHHHHHHT---T-SCTTEEEEEEHHHHHHTT--CCHHHHHHH-TTTCEEEEEECEECCCC---------TT
T ss_pred             CCccccCCHHHHHHHHH---h-CCCceEEEechHHHHhcC--CCHHHHHHH-HhhhheEEeeccCCccc---------cC
Confidence            11111 25666666654   2 33323 233543211100  012333333 33334788999975110         01


Q ss_pred             CCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCC----cc------ChHHHHHHHHHHHHHh
Q 015894          318 ISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRT----NV------DIRKLMIAGDFICKHL  375 (398)
Q Consensus       318 a~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t----~i------Dl~~L~~~~~~v~~~~  375 (398)
                      ....       ..+|  + +.|..+...++..|++.|++-    .+      ..+.+....+++.+.+
T Consensus       201 ~~~~-------~~~~--~-G~G~id~~~~~~~l~~~gy~g~~~~E~~~~~~~~~~~~~~s~~~l~~~l  258 (262)
T 3p6l_A          201 ENEQ-------HDVI--W-GTGILDVKGMLKELKSQNFKGVFSIEYEYNWENSVPDIKECIQYFNKTA  258 (262)
T ss_dssp             CSCC-------CEEC--T-TSSSSCHHHHHHHHHHTTCCEEEEECCCSSTTSCHHHHHHHHHHHHHHH
T ss_pred             cCcc-------ccCC--C-CCCccCHHHHHHHHHHCCCCeEEEEEeccCcCChHHHHHHHHHHHHHHH
Confidence            1100       0011  1 368999999999999877641    12      2345555555555544

>1ur4_A Galactanase; hydrolase, beta-1, glycoside hydrolase, substrate specificity, pectin, GH-A, family 53, plant cell WALL degradation; HET: B2G PGE; 2.2A {Bacillus licheniformis} SCOP: c.1.8.3 PDB: 1r8l_A* 1ur0_A* 2ccr_A* 2j74_A* 2gft_A*

Probab=87.55  E-value=24  Score=35.10  Aligned_cols=126  Identities=13%  Similarity=0.088  Sum_probs=70.0

Q ss_pred             hhHHHHHHcCCCEEEEeccCchHHHh-hhc--CCCHHHHHHHHHHHHHHHHhCCCcEEEEEeee--ecCCCC------CC
Q 015894          176 KGFEAAVAAGAKEVAIFASASESFSK-SNI--NCTIEDSLIRYRDVALAARELSIPVRGYLSCV--VGCPVE------GM  244 (398)
Q Consensus       176 ~~ie~a~~~Gv~~v~i~~~~Sd~~~~-~~~--~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~--fg~~~~------~r  244 (398)
                      ..++...++|+..||+-+-+.+.-.. ..+  +.   ..++.+..+++.||++|++|...+-+.  +..|-.      -.
T Consensus        52 d~~~ilk~~G~N~VRlrvwv~p~~~~g~~y~~g~---~d~~~~~~~a~~Ak~~GLkVlldfHysD~WadPg~Q~~P~aW~  128 (399)
T 1ur4_A           52 DIFKTLKEAGVNYVRVRIWNDPYDANGNGYGGGN---NDLEKAIQIGKRATANGMKLLADFHYSDFWADPAKQKAPKAWA  128 (399)
T ss_dssp             CHHHHHHHTTCCEEEEEECSCCBCTTCCBCSTTC---CCHHHHHHHHHHHHHTTCEEEEEECSSSSCCSSSCCCCCGGGT
T ss_pred             hHHHHHHHCCCCEEEEeeecCCcccccCccCCCC---CCHHHHHHHHHHHHHCCCEEEEEeccCCccCCcccccCccccc
Confidence            35677788999999875444332000 000  11   125667788999999999987554321  101110      00


Q ss_pred             -CCHH--------HHHHHHHHHHhCCC--CEEEEcc-Cc-Cc---CCHHHHHHH----HHHHHhhCCCCeEEEEeCCccc
Q 015894          245 -VPPS--------KVAYVSKQLYDMGC--SEISLGD-TI-GV---GTPGTVIPM----LEAVLDAVPVDKLAVHFHDTYG  304 (398)
Q Consensus       245 -~~~~--------~l~~~a~~l~~~Ga--d~I~L~D-T~-G~---~~P~~v~~l----v~~l~~~~p~~~l~~H~Hnd~G  304 (398)
                       .+.+        +..++++.+.+.|+  +.|.+.. +. |.   .....+..+    ++++|+..|..+|-+|..+-..
T Consensus       129 ~~~~~~l~~~~~~yt~~~l~~l~~~g~~~~~vqvGNEi~~g~~~~~~~~~la~ll~ag~~aVR~v~p~~~V~ih~~~~~~  208 (399)
T 1ur4_A          129 NLNFEDKKTALYQYTKQSLKAMKAAGIDIGMVQVGNETNGGLAGETDWAKMSQLFNAGSQAVRETDSNILVALHFTNPET  208 (399)
T ss_dssp             TCCHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEESSSCSSCBTTBCCHHHHHHHHHHHHHHHHHHCTTSEEEEEECCTTS
T ss_pred             cCCHHHHHHHHHHHHHHHHHHHHhcCCCCcEEEEccccccccCCcccHHHHHHHHHHHHHHHHHhCCCCeEEEEeCCCcc
Confidence             1222        33345666777775  4565543 21 22   224554444    5778888898888888866543

>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; HET: GOL; 1.25A {Mycobacterium smegmatis} PDB: 3ng3_A

Probab=87.55  E-value=18  Score=33.49  Aligned_cols=108  Identities=24%  Similarity=0.245  Sum_probs=71.1

Q ss_pred             eeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCc---CCHHHHHHHHHHHHhhCCCCeEEE----Ee----CCcc
Q 015894          235 CVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGV---GTPGTVIPMLEAVLDAVPVDKLAV----HF----HDTY  303 (398)
Q Consensus       235 ~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p~~~l~~----H~----Hnd~  303 (398)
                      .+.|.|. +..+.+.-..-++.+.+.|||.|-+.=-.|.   ..-..+.+-+..+++..++.++=+    ..    |++-
T Consensus        68 tVigFP~-G~~~~~~K~~E~~~Ai~~GAdEIDmVinig~lk~g~~~~v~~ei~~v~~a~~~~~lKvIiEt~~L~~~~t~e  146 (231)
T 3ndo_A           68 AVAGFPS-GKHVPGIKATEAELAVAAGATEIDMVIDVGAALAGDLDAVSADITAVRKAVRAATLKVIVESAALLEFSGEP  146 (231)
T ss_dssp             EEESTTT-CCSCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCHHHHHHHTCHH
T ss_pred             EEecCCC-CCCcHHHHHHHHHHHHHcCCCEEEEEeehHhhhcccHHHHHHHHHHHHHHccCCceEEEEECcccCCCCCHH
Confidence            3345674 4445554455577888899999988877887   566778888888888765433221    11    1222


Q ss_pred             chHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q 015894          304 GQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNG  352 (398)
Q Consensus       304 GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~  352 (398)
                       .=...+..|.++||++|=+|- |.+.       +|++..|++-.+.+.
T Consensus       147 -ei~~a~~ia~~aGADfVKTST-Gf~~-------~~gAt~edv~lm~~~  186 (231)
T 3ndo_A          147 -LLADVCRVARDAGADFVKTST-GFHP-------SGGASVQAVEIMART  186 (231)
T ss_dssp             -HHHHHHHHHHHTTCSEEECCC-SCCT-------TCSCCHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHCcCEEEcCC-CCCC-------CCCCCHHHHHHHHHH
Confidence             223455677899999998885 3331       457788888777663

>1yx1_A Hypothetical protein PA2260; structural genomics, PSI, PROT structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa PAO1} SCOP: c.1.15.7

Probab=87.51  E-value=4.4  Score=36.94  Aligned_cols=156  Identities=12%  Similarity=-0.042  Sum_probs=85.7

Q ss_pred             HHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe------C--C-----HhhHHHHHHcCCCE
Q 015894          122 VELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT------P--N-----LKGFEAAVAAGAKE  188 (398)
Q Consensus       122 ~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~------~--n-----~~~ie~a~~~Gv~~  188 (398)
                      .+.++.+.++|++.||+......   +. .+.+++.+.+++ .+.++....      .  .     .+.++.|.+.|++.
T Consensus        26 ~~~l~~a~~~G~~~vEl~~~~~~---~~-~~~~~~~~~l~~-~gl~i~~~~~~~~~~~~~~~~~~~~~~i~~A~~lGa~~  100 (264)
T 1yx1_A           26 ASFLPLLAMAGAQRVELREELFA---GP-PDTEALTAAIQL-QGLECVFSSPLELWREDGQLNPELEPTLRRAEACGAGW  100 (264)
T ss_dssp             GGGHHHHHHHTCSEEEEEGGGCS---SC-CCHHHHHHHHHH-TTCEEEEEEEEEEECTTSSBCTTHHHHHHHHHHTTCSE
T ss_pred             HHHHHHHHHcCCCEEEEEHHhcC---CC-HHHHHHHHHHHH-cCCEEEEecchhhcCCchhHHHHHHHHHHHHHHcCCCE
Confidence            35778889999999999753111   11 145666666653 234333221      1  1     13467778899999


Q ss_pred             EEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 015894          189 VAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG  268 (398)
Q Consensus       189 v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~  268 (398)
                      |.+.......          .+   .+..+.++|++.|+.+.  +...   +...-.+++.+.++++.+.+.+.+.=..-
T Consensus       101 v~~~~g~~~~----------~~---~l~~l~~~a~~~Gv~l~--lEn~---~~~~~~~~~~~~~ll~~v~~~~~~vg~~~  162 (264)
T 1yx1_A          101 LKVSLGLLPE----------QP---DLAALGRRLARHGLQLL--VEND---QTPQGGRIEVLERFFRLAERQQLDLAMTF  162 (264)
T ss_dssp             EEEEEECCCS----------SC---CHHHHHHHHTTSSCEEE--EECC---SSHHHHCHHHHHHHHHHHHHTTCSEEEEE
T ss_pred             EEEecCCCCc----------HH---HHHHHHHHHHhcCCEEE--EecC---CCCCCCCHHHHHHHHHHHHhcCCCeEEEE
Confidence            9886542110          01   45567788888897654  3211   00001246677777776655565532345


Q ss_pred             cCcCcC-CHHHHHHHHHHHHhhCCCCeEEEEeCCccc
Q 015894          269 DTIGVG-TPGTVIPMLEAVLDAVPVDKLAVHFHDTYG  304 (398)
Q Consensus       269 DT~G~~-~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~G  304 (398)
                      ||.-.. ......+.++.+..+    -.++|++|..+
T Consensus       163 D~g~~~~~~~d~~~~~~~~~~~----i~~vHlkD~~~  195 (264)
T 1yx1_A          163 DIGNWRWQEQAADEAALRLGRY----VGYVHCKAVIR  195 (264)
T ss_dssp             ETTGGGGGTCCHHHHHHHHGGG----EEEEEECEEEE
T ss_pred             ehhhhhhcCCCHHHHHHHhhhh----EEEEEeecccC
Confidence            883222 123334444444332    37889888754

>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str}

Probab=87.45  E-value=3.7  Score=39.08  Aligned_cols=82  Identities=16%  Similarity=0.199  Sum_probs=69.0

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcCc---CCHHHHHHHHHHHHhhCC-CCeEEE-EeCCccchHHHHHHHHHHhC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGV---GTPGTVIPMLEAVLDAVP-VDKLAV-HFHDTYGQALSNILASLQMG  317 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p-~~~l~~-H~Hnd~GlA~ANalaAl~aG  317 (398)
                      +..|.+.+.++++.+.+.|++.|.++-|.|=   +++++-.++++.+.+... .+++-+ -++|+..-++..+..|-++|
T Consensus        19 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~G   98 (294)
T 3b4u_A           19 GTVDIDAMIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAG   98 (294)
T ss_dssp             SSBCHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHTTCCGGGEEEEECCSSHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCccHHHHHHHHHHHHhcC
Confidence            5789999999999999999999999999986   778888889998887764 355555 45678888999999999999


Q ss_pred             CCEEeec
Q 015894          318 ISTVDSS  324 (398)
Q Consensus       318 a~~VD~S  324 (398)
                      |+.+=+.
T Consensus        99 adavlv~  105 (294)
T 3b4u_A           99 ARNILLA  105 (294)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEc
Confidence            9977554

>1xg4_A Probable methylisocitrate lyase; 2-methylisocitrate lyase/inhibitor complex, isocitrate lyase superfamily; HET: ICT; 1.60A {Escherichia coli} PDB: 1xg3_A* 1mum_A 1oqf_A 1ujq_A 1o5q_A

Probab=87.44  E-value=4.3  Score=38.96  Aligned_cols=207  Identities=14%  Similarity=0.139  Sum_probs=118.0

Q ss_pred             HHHHHHhcCCCEEEEecC-C--CCCcccC--CCCHHHHHHHHHhcc-CCcEEEEe--C-----CH----hhHHHHHHcCC
Q 015894          124 LIKLLVSSGLAVVEATSF-V--SPKWVPQ--LADAKDVMAAIQNVE-GARFPVLT--P-----NL----KGFEAAVAAGA  186 (398)
Q Consensus       124 ia~~L~~aGv~~IEvG~~-~--~~~~~p~--~~D~~~v~~~i~~~~-~~~l~~l~--~-----n~----~~ie~a~~~Gv  186 (398)
                      -++.++++|++.|=+|.. .  +....|.  .-+.++++..++.+. .+.+.+++  +     +.    +-+++..++|+
T Consensus        29 sA~~~~~aG~~ai~vs~~~~a~~~~G~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~~~~~~v~~l~~aGa  108 (295)
T 1xg4_A           29 HALLAQRAGYQAIYLSGGGVAAGSLGLPDLGISTLDDVLTDIRRITDVCSLPLLVDADIGFGSSAFNVARTVKSMIKAGA  108 (295)
T ss_dssp             HHHHHHHTTCSCEEECHHHHHHTTTCCCSSSCSCHHHHHHHHHHHHHHCCSCEEEECTTCSSSSHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHcCCCEEEECchHhhhhhcCCCCCCCCCHHHHHHHHHHHHhhCCCCEEecCCcccCCCHHHHHHHHHHHHHcCC
Confidence            366778899999999854 1  1122232  235667776666432 12222332  1     22    23456678999


Q ss_pred             CEEEEeccCchH---HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 015894          187 KEVAIFASASES---FSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCS  263 (398)
Q Consensus       187 ~~v~i~~~~Sd~---~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad  263 (398)
                      ..|.|-....+-   |..-+-=.+.++..++++.+++.+..-++.+.+--- ++     .....+...+-++.+.++|||
T Consensus       109 ~gv~iEd~~~~k~cgH~~gk~L~p~~~~~~~I~Aa~~a~~~~~~~i~aRtd-a~-----~~~gl~~ai~ra~ay~eAGAd  182 (295)
T 1xg4_A          109 AGLHIEDQVGAKRSGHRPNKAIVSKEEMVDRIRAAVDAKTDPDFVIMARTD-AL-----AVEGLDAAIERAQAYVEAGAE  182 (295)
T ss_dssp             SEEEEECBCSSCCCTTSSSCCBCCHHHHHHHHHHHHHHCSSTTSEEEEEEC-CH-----HHHCHHHHHHHHHHHHHTTCS
T ss_pred             eEEEECCCCCCcccCCCCCCccCCHHHHHHHHHHHHHhccCCCcEEEEecH-Hh-----hhcCHHHHHHHHHHHHHcCCC
Confidence            999998876321   100000124667777776666554433454442110 00     011236777788889999999


Q ss_pred             EEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEe--CCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCc
Q 015894          264 EISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHF--HDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNV  341 (398)
Q Consensus       264 ~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~--Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa  341 (398)
                      .|.+.   |.-+++.+.++.+.+.  .|   +-+-.  .+....  -+.-.--+.|+++|-....++        |+-+.
T Consensus       183 ~i~~e---~~~~~~~~~~i~~~~~--iP---~~~N~~~~g~~p~--~~~~eL~~~G~~~v~~~~~~~--------~aa~~  244 (295)
T 1xg4_A          183 MLFPE---AITELAMYRQFADAVQ--VP---ILANITEFGATPL--FTTDELRSAHVAMALYPLSAF--------RAMNR  244 (295)
T ss_dssp             EEEET---TCCSHHHHHHHHHHHC--SC---BEEECCSSSSSCC--CCHHHHHHTTCSEEEESSHHH--------HHHHH
T ss_pred             EEEEe---CCCCHHHHHHHHHHcC--CC---EEEEecccCCCCC--CCHHHHHHcCCCEEEEChHHH--------HHHHH
Confidence            99986   3334667777666653  34   32211  111111  122344478999998877766        56688


Q ss_pred             cHHHHHHHHHhCC
Q 015894          342 ATEDVVYMLNGLG  354 (398)
Q Consensus       342 ~lE~vv~~L~~~G  354 (398)
                      ++++++..+++.|
T Consensus       245 a~~~~~~~i~~~g  257 (295)
T 1xg4_A          245 AAEHVYNVLRQEG  257 (295)
T ss_dssp             HHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHhC
Confidence            8888888887654

>1vcv_A Probable deoxyribose-phosphate aldolase; DERA, hyperthermophIle, archaea, lyase; 2.00A {Pyrobaculum aerophilum} SCOP: c.1.10.1

Probab=87.43  E-value=12  Score=34.45  Aligned_cols=144  Identities=18%  Similarity=0.158  Sum_probs=85.8

Q ss_pred             HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 015894          178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCPVEGMVPPSKVAYVSK  255 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~  255 (398)
                      ++.|.+.|+.-|.+.    +.+                   +..+++.  |+.    ++.+.|.|... .+.+.-..-++
T Consensus        23 ~~~A~~~~~~aVcv~----p~~-------------------v~~a~~~l~gv~----v~tvigFP~G~-~~~~~k~~E~~   74 (226)
T 1vcv_A           23 ARKAEELGVAAYCVN----PIY-------------------APVVRPLLRKVK----LCVVADFPFGA-LPTASRIALVS   74 (226)
T ss_dssp             HHHHHHHTCSEEEEC----GGG-------------------HHHHGGGCSSSE----EEEEESTTTCC-SCHHHHHHHHH
T ss_pred             HHHHHHhCCCEEEEC----HHH-------------------HHHHHHHhCCCe----EEEEeCCCCCC-CchHHHHHHHH
Confidence            356777899888874    222                   3344432  322    44455667544 45554444466


Q ss_pred             HHHhCCCCEEEEccCcC---cCCHHHHHHHHHHHHhhCCC--Ce--EEEEeCCccchHHHHHHHHHHhCCCEEeeccccC
Q 015894          256 QLYDMGCSEISLGDTIG---VGTPGTVIPMLEAVLDAVPV--DK--LAVHFHDTYGQALSNILASLQMGISTVDSSVSGL  328 (398)
Q Consensus       256 ~l~~~Gad~I~L~DT~G---~~~P~~v~~lv~~l~~~~p~--~~--l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~Gl  328 (398)
                      . .+.||+.|-+.=-.|   ...-..+.+-+..+++..+.  ++  |+.-.=++- .=.-.+..|+++||++|=+|- |.
T Consensus        75 ~-i~~GAdEID~Vinig~~~~g~~~~v~~ei~~v~~a~~~~~lKvIlEt~~Lt~e-ei~~a~~ia~eaGADfVKTST-Gf  151 (226)
T 1vcv_A           75 R-LAEVADEIDVVAPIGLVKSRRWAEVRRDLISVVGAAGGRVVKVITEEPYLRDE-ERYTLYDIIAEAGAHFIKSST-GF  151 (226)
T ss_dssp             H-HTTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHH-HHHHHHHHHHHHTCSEEECCC-SC
T ss_pred             H-HHCCCCEEEEecchhhhcCCCHHHHHHHHHHHHHHHcCCCceEEEeccCCCHH-HHHHHHHHHHHcCCCEEEeCC-CC
Confidence            6 889999998888788   45567788888888887643  22  222111222 233456678899999999985 33


Q ss_pred             CCCCCC--CCCCCCccHHHHHHHHHh
Q 015894          329 GGCPYA--KGASGNVATEDVVYMLNG  352 (398)
Q Consensus       329 Gecp~a--~graGNa~lE~vv~~L~~  352 (398)
                      +.=-|+  .|-+|++..|++-.+.+.
T Consensus       152 ~~~~~~~~~~~~~gAt~~dv~lm~~~  177 (226)
T 1vcv_A          152 AEEAYAARQGNPVHSTPERAAAIARY  177 (226)
T ss_dssp             CCHHHHHHTTCCSSCCHHHHHHHHHH
T ss_pred             CccccccccCCCCCCCHHHHHHHHHH
Confidence            200000  001568888888766654

>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0

Probab=87.41  E-value=2  Score=41.50  Aligned_cols=99  Identities=12%  Similarity=0.013  Sum_probs=76.6

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcCc---CCHHHHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHHHHHhCC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGV---GTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILASLQMGI  318 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANalaAl~aGa  318 (398)
                      +..|.+.+.++++.+.+.|++.|.++-|+|-   ++.++-.++++.+.+... .++|-++.-++..-++..+..|-++||
T Consensus        28 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~v~~~~v~~~~grvpViaGvg~~t~~ai~la~~A~~~Ga  107 (316)
T 3e96_A           28 GSIDWHHYKETVDRIVDNGIDVIVPCGNTSEFYALSLEEAKEEVRRTVEYVHGRALVVAGIGYATSTAIELGNAAKAAGA  107 (316)
T ss_dssp             CCBCHHHHHHHHHHHHTTTCCEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECSSHHHHHHHHHHHHHHTC
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEeCccccCcccCCHHHHHHHHHHHHHHhCCCCcEEEEeCcCHHHHHHHHHHHHhcCC
Confidence            5789999999999999999999999999985   567788888888887653 467777765688888999999999999


Q ss_pred             CEEeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q 015894          319 STVDSSVSGLGGCPYAKGASGNVATEDVVYMLN  351 (398)
Q Consensus       319 ~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~  351 (398)
                      +.+=+.      .||-.    .++-++++..++
T Consensus       108 davlv~------~P~y~----~~s~~~l~~~f~  130 (316)
T 3e96_A          108 DAVMIH------MPIHP----YVTAGGVYAYFR  130 (316)
T ss_dssp             SEEEEC------CCCCS----CCCHHHHHHHHH
T ss_pred             CEEEEc------CCCCC----CCCHHHHHHHHH
Confidence            977543      34321    234566666664

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=87.35  E-value=8.4  Score=40.54  Aligned_cols=140  Identities=16%  Similarity=0.073  Sum_probs=85.9

Q ss_pred             HHHHHHcCCCEEEEeccC--------chH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-C--CcEEEEEeeeecCCCCCC
Q 015894          178 FEAAVAAGAKEVAIFASA--------SES--FSKSNINCTIEDSLIRYRDVALAAREL-S--IPVRGYLSCVVGCPVEGM  244 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~--------Sd~--~~~~~~~~s~~~~l~~~~~~v~~ak~~-G--~~v~~~l~~~fg~~~~~r  244 (398)
                      .+++.++|.|.|.|..+-        |+.  +....+|-+.++-.+.+.++++.+|+. |  +.+.+-++..- . ..+.
T Consensus       147 A~~a~~aGfd~veih~~~gyl~~qFlsp~~n~r~d~yGgs~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~~-~-~~~g  224 (671)
T 1ps9_A          147 AQLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLD-L-VEDG  224 (671)
T ss_dssp             HHHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEEC-C-STTC
T ss_pred             HHHHHHcCCCEEEEccccchHHHHhCCCccCCCcCcCCCcHHHHHHHHHHHHHHHHHHcCCCceEEEEECccc-c-CCCC
Confidence            346678999999885431        121  122345667777777788888888764 3  44444444321 1 1223


Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEc----cC----cCc-CCHHHHHHHHHHHHhhCCCCeEEEEeCCccch-HHHHHHHHH
Q 015894          245 VPPSKVAYVSKQLYDMGCSEISLG----DT----IGV-GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQ-ALSNILASL  314 (398)
Q Consensus       245 ~~~~~l~~~a~~l~~~Gad~I~L~----DT----~G~-~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~Gl-A~ANalaAl  314 (398)
                      .+.+...++++.+.++|++.|.+.    +.    ... ..|....++++.+++.+. +||..=.    |. -..++..++
T Consensus       225 ~~~~~~~~~a~~l~~~g~d~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~-iPvi~~G----gi~~~~~a~~~l  299 (671)
T 1ps9_A          225 GTFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVS-LPLVTTN----RINDPQVADDIL  299 (671)
T ss_dssp             CCHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCS-SCEEECS----SCCSHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEcCCCccccccccccccCCcchHHHHHHHHHHhcC-ceEEEeC----CCCCHHHHHHHH
Confidence            578889999999999999999874    11    000 111233467888888764 3454422    22 356778888


Q ss_pred             HhC-CCEEeec
Q 015894          315 QMG-ISTVDSS  324 (398)
Q Consensus       315 ~aG-a~~VD~S  324 (398)
                      +.| ||.|-..
T Consensus       300 ~~g~aD~V~~g  310 (671)
T 1ps9_A          300 SRGDADMVSMA  310 (671)
T ss_dssp             HTTSCSEEEES
T ss_pred             HcCCCCEEEeC
Confidence            998 8877543

>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A

Probab=87.28  E-value=8.1  Score=37.03  Aligned_cols=210  Identities=11%  Similarity=0.115  Sum_probs=119.4

Q ss_pred             HHHHHHhcCCCEEEEecC-CC-CCcccCC--CCHHHHHHHHHhcc-CCcEEEEe--C----CH----hhHHHHHHcCCCE
Q 015894          124 LIKLLVSSGLAVVEATSF-VS-PKWVPQL--ADAKDVMAAIQNVE-GARFPVLT--P----NL----KGFEAAVAAGAKE  188 (398)
Q Consensus       124 ia~~L~~aGv~~IEvG~~-~~-~~~~p~~--~D~~~v~~~i~~~~-~~~l~~l~--~----n~----~~ie~a~~~Gv~~  188 (398)
                      -++.++++|++.|=+|.. .+ ....|..  -+.++++..++.+. .+.+.+++  +    +.    +-+++..++|+.-
T Consensus        31 sA~~~~~aG~~ai~vsg~~~a~~lG~pD~~~vt~~em~~~~~~I~~~~~~PviaD~d~Gyg~~~~v~~~v~~l~~aGaag  110 (295)
T 1s2w_A           31 SARIVQEAGFKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDASDVPILLDADTGYGNFNNARRLVRKLEDRGVAG  110 (295)
T ss_dssp             HHHHHHHHTCSCEEECCHHHHHTC---------CHHHHHHHHHHHHTCSSCEEEECCSSCSSHHHHHHHHHHHHHTTCCE
T ss_pred             HHHHHHHcCCCEEEeChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhcCCCCEEecCCCCCCCHHHHHHHHHHHHHcCCcE
Confidence            356678899999999842 11 1112211  13355665555432 22333333  2    21    2355667899999


Q ss_pred             EEEeccCchH---HHh--hhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 015894          189 VAIFASASES---FSK--SNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCS  263 (398)
Q Consensus       189 v~i~~~~Sd~---~~~--~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad  263 (398)
                      |+|-..+.+-   |..  .+-=.+.++..++++.+++....-++.+.+--- ++   . .....+..++-++.+.++|||
T Consensus       111 v~iED~~~~k~cgH~gg~~k~l~p~~e~~~rI~Aa~~a~~~~~~~i~aRtd-a~---~-a~~g~~~ai~Ra~ay~eAGAd  185 (295)
T 1s2w_A          111 ACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVE-AF---I-AGWGLDEALKRAEAYRNAGAD  185 (295)
T ss_dssp             EEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEEC-TT---T-TTCCHHHHHHHHHHHHHTTCS
T ss_pred             EEECCCCCCccccccCCCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeeh-HH---h-ccccHHHHHHHHHHHHHcCCC
Confidence            9998876421   110  001135667777776665544333455542111 00   0 112357788888899999999


Q ss_pred             EEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccH
Q 015894          264 EISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVAT  343 (398)
Q Consensus       264 ~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~l  343 (398)
                      .|.+-=  |.-+++.+.++.+.+...+|   +-+- -..+|.-.  .-.--+.|+++|-....++        |+-+.++
T Consensus       186 ~i~~e~--~~~~~~~~~~i~~~~~~~~P---~i~~-~~~~~~~~--~~eL~~lGv~~v~~~~~~~--------raa~~a~  249 (295)
T 1s2w_A          186 AILMHS--KKADPSDIEAFMKAWNNQGP---VVIV-PTKYYKTP--TDHFRDMGVSMVIWANHNL--------RASVSAI  249 (295)
T ss_dssp             EEEECC--CSSSSHHHHHHHHHHTTCSC---EEEC-CSTTTTSC--HHHHHHHTCCEEEECSHHH--------HHHHHHH
T ss_pred             EEEEcC--CCCCHHHHHHHHHHcCCCCC---EEEe-CCCCCCCC--HHHHHHcCCcEEEEChHHH--------HHHHHHH
Confidence            999851  34457888888888764445   3221 11123221  3344468999998877776        5667888


Q ss_pred             HHHHHHHHhCC
Q 015894          344 EDVVYMLNGLG  354 (398)
Q Consensus       344 E~vv~~L~~~G  354 (398)
                      +++...+.+.|
T Consensus       250 ~~~~~~i~~~g  260 (295)
T 1s2w_A          250 QQTTKQIYDDQ  260 (295)
T ss_dssp             HHHHHHHHHHS
T ss_pred             HHHHHHHHHcC
Confidence            88888887644

>3m0z_A Putative aldolase; MCSG, PSI-2, structural genomics, protein structure initiative, midwest center for structural genomics, lyase; HET: MSE; 1.20A {Klebsiella pneumoniae subsp} PDB: 3nzr_A 3lm7_A

Probab=87.19  E-value=1.7  Score=40.35  Aligned_cols=90  Identities=19%  Similarity=0.209  Sum_probs=67.6

Q ss_pred             HHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHH
Q 015894          179 EAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLY  258 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~  258 (398)
                      ....+.|...|.+|----.            +.++.++.+++.|.+.|+.++          -.+-.|.+.+.++.+.+.
T Consensus       152 aml~dmG~~SvKffPm~Gl------------~~l~E~~avAka~a~~g~~lE----------PTGGIdl~N~~~I~~i~l  209 (249)
T 3m0z_A          152 ALLKDMGGSSIKYFPMGGL------------KHRAEFEAVAKACAAHDFWLE----------PTGGIDLENYSEILKIAL  209 (249)
T ss_dssp             HHHHHTTCCEEEECCCTTT------------TTHHHHHHHHHHHHHTTCEEE----------EBSSCCTTTHHHHHHHHH
T ss_pred             HHHHHcCCCeeeEeecCCc------------ccHHHHHHHHHHHHHcCceEC----------CCCCccHhhHHHHHHHHH
Confidence            4456789999998732111            346777888999999999443          234578888999999999


Q ss_pred             hCCCCEE-------EEccCcCcCCHHHHHHHHHHHHhhC
Q 015894          259 DMGCSEI-------SLGDTIGVGTPGTVIPMLEAVLDAV  290 (398)
Q Consensus       259 ~~Gad~I-------~L~DT~G~~~P~~v~~lv~~l~~~~  290 (398)
                      ++|+..|       .|--..|.-.|++|++++..+++.+
T Consensus       210 ~aGv~~viPHIYssIIDk~TG~TrpedV~~ll~~~K~l~  248 (249)
T 3m0z_A          210 DAGVSKIIPHIYSSIIDKASGNTRPADVRQLLEMTKQLV  248 (249)
T ss_dssp             HHTCSCBCCBCCGGGBCTTTCCBCHHHHHHHHHHHHHHC
T ss_pred             HcCCCeecccccceeccCCCCCCCHHHHHHHHHHHHHhh
Confidence            9998764       2335679999999999999998753

>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*

Probab=87.18  E-value=3.3  Score=39.59  Aligned_cols=82  Identities=17%  Similarity=0.192  Sum_probs=68.0

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcC---cCCHHHHHHHHHHHHhhCC-CCeEEEE-eCCccchHHHHHHHHHHhC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIG---VGTPGTVIPMLEAVLDAVP-VDKLAVH-FHDTYGQALSNILASLQMG  317 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~lv~~l~~~~p-~~~l~~H-~Hnd~GlA~ANalaAl~aG  317 (398)
                      +..|.+.+.++++.+.+.|++.|.++-|+|   .+++++-.++++.+.+... .++|-++ ++|+..-++..+..|-++|
T Consensus        28 g~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~G  107 (301)
T 1xky_A           28 GNIDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVG  107 (301)
T ss_dssp             SSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCceEEeCCCCCCHHHHHHHHHHHHhcC
Confidence            578999999999999999999999999988   5678888888888887653 4556554 5678888999999999999


Q ss_pred             CCEEeec
Q 015894          318 ISTVDSS  324 (398)
Q Consensus       318 a~~VD~S  324 (398)
                      |+.+=+.
T Consensus       108 adavlv~  114 (301)
T 1xky_A          108 VDAVMLV  114 (301)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEc
Confidence            9977554

>3txv_A Probable tagatose 6-phosphate kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.80A {Sinorhizobium meliloti}

Probab=87.15  E-value=9.1  Score=38.89  Aligned_cols=109  Identities=16%  Similarity=0.138  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHHHhC-CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE-EEc-cC----cCc--CCHHHHHHH
Q 015894          212 LIRYRDVALAAREL-SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEI-SLG-DT----IGV--GTPGTVIPM  282 (398)
Q Consensus       212 l~~~~~~v~~ak~~-G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I-~L~-DT----~G~--~~P~~v~~l  282 (398)
                      +..++++++.+|+. +.-+- .++         -.+++.+..+++.+.+.+...| ... ..    .|+  ++|..+..+
T Consensus         5 l~~mkelL~~ak~g~~~gi~-av~---------~~n~e~i~Ail~aAee~~sPVIIe~t~~qv~~~gGYtG~~p~~f~~~   74 (450)
T 3txv_A            5 ENHLIDIARWSERPGPRGIP-SIC---------SAHPLVIEAAMLRAHREKAPVLIEATCNQVNQDGGYTGMTPEDFTRF   74 (450)
T ss_dssp             ----------------CCEE-EEC---------CCCHHHHHHHHHHHHHSCSCEEEEEETTTSCTTCTTTTCCHHHHHHH
T ss_pred             ccCHHHHHHHHHhCCCcEEE-EeC---------cCCHHHHHHHHHHHHHhCCCEEEEcChhhHhhcCCCCCCCHHHHHHH
Confidence            34467778888872 23331 222         1478888899999999987754 333 22    233  568999999


Q ss_pred             HHHHHhhC--CCCeEEEEe---CCc----------cchHHHHHHHHHHhCCC--EEeeccccCCC
Q 015894          283 LEAVLDAV--PVDKLAVHF---HDT----------YGQALSNILASLQMGIS--TVDSSVSGLGG  330 (398)
Q Consensus       283 v~~l~~~~--p~~~l~~H~---Hnd----------~GlA~ANalaAl~aGa~--~VD~Sv~GlGe  330 (398)
                      +..+.++.  |..+|.+|+   -.+          +..+...+..|+++|.+  +||+|...+++
T Consensus        75 V~~~A~~~~vPv~pV~LhlDHg~~~~w~~~~~~~am~~a~e~i~~aI~AGFtSVMiD~S~~p~ee  139 (450)
T 3txv_A           75 VGAIADRIEFPREKILLGGDHLGPNPWKHLPADEAMAKAEAMITAYAKAGFTKLHLDTSMGCAGE  139 (450)
T ss_dssp             HHHHHHHTTCCGGGEEEEEEEESSGGGTTSCHHHHHHHHHHHHHHHHTTTCCEEEECCCBCCSSS
T ss_pred             HHHHHHHcCcCcccEEEECCCCCCcccccccHHHHHHHHHHHHHHHHHcCCCEEEECCCCCchhh
Confidence            99887764  532455554   221          12367888899999998  77999999999

>1s2w_A Phosphoenolpyruvate phosphomutase; phosphonopyruvate, phosphonate biosynthesis pathway, isomera; 1.69A {Mytilus edulis} SCOP: c.1.12.7 PDB: 1m1b_A 1s2t_A 1s2v_A 1pym_A 1s2u_A

Probab=87.14  E-value=14  Score=35.38  Aligned_cols=146  Identities=14%  Similarity=0.036  Sum_probs=86.2

Q ss_pred             CcEEEEe-CCHhhHHHHHHcCCCEEEEe-ccCchHHHhhh-cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC
Q 015894          166 ARFPVLT-PNLKGFEAAVAAGAKEVAIF-ASASESFSKSN-INCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE  242 (398)
Q Consensus       166 ~~l~~l~-~n~~~ie~a~~~Gv~~v~i~-~~~Sd~~~~~~-~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~  242 (398)
                      -.+.++. .+.-....+.++|++.+.+. .+++-.+-..- ...|.++.+..++.+.+.   ..+.|.+.+      |..
T Consensus        19 ~~i~~~~a~D~~sA~~~~~aG~~ai~vsg~~~a~~lG~pD~~~vt~~em~~~~~~I~~~---~~~PviaD~------d~G   89 (295)
T 1s2w_A           19 DLEFIMEAHNGLSARIVQEAGFKGIWGSGLSVSAQLGVRDSNEASWTQVVEVLEFMSDA---SDVPILLDA------DTG   89 (295)
T ss_dssp             SCEEEEEECSHHHHHHHHHHTCSCEEECCHHHHHTC---------CHHHHHHHHHHHHT---CSSCEEEEC------CSS
T ss_pred             CcEEEecCCCHHHHHHHHHcCCCEEEeChHHHHHhCCCCCCCCCCHHHHHHHHHHHHhc---CCCCEEecC------CCC
Confidence            3455554 35445556667899988876 33332111111 123566666666554443   345554322      222


Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCc--------C----cCCH-HHHHHHHHHHHhhC--CCCeEEEEeCCc-----
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTI--------G----VGTP-GTVIPMLEAVLDAV--PVDKLAVHFHDT-----  302 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~--------G----~~~P-~~v~~lv~~l~~~~--p~~~l~~H~Hnd-----  302 (398)
                       --+++.+.+.++++.+.|+..|.|-|..        |    .+.| .+..+.|+++++..  ++..|-.-+-..     
T Consensus        90 -yg~~~~v~~~v~~l~~aGaagv~iED~~~~k~cgH~gg~~k~l~p~~e~~~rI~Aa~~a~~~~~~~i~aRtda~~a~~g  168 (295)
T 1s2w_A           90 -YGNFNNARRLVRKLEDRGVAGACLEDKLFPKTNSLHDGRAQPLADIEEFALKIKACKDSQTDPDFCIVARVEAFIAGWG  168 (295)
T ss_dssp             -CSSHHHHHHHHHHHHHTTCCEEEEECBCC--------CTTCCBCCHHHHHHHHHHHHHHCSSTTCEEEEEECTTTTTCC
T ss_pred             -CCCHHHHHHHHHHHHHcCCcEEEECCCCCCccccccCCCCCcccCHHHHHHHHHHHHHhcccCCcEEEEeehHHhcccc
Confidence             1256788888999999999999999997        3    2444 45667777777664  443344443222     


Q ss_pred             cchHHHHHHHHHHhCCCEE
Q 015894          303 YGQALSNILASLQMGISTV  321 (398)
Q Consensus       303 ~GlA~ANalaAl~aGa~~V  321 (398)
                      .--++.-+.+-.+|||+.|
T Consensus       169 ~~~ai~Ra~ay~eAGAd~i  187 (295)
T 1s2w_A          169 LDEALKRAEAYRNAGADAI  187 (295)
T ss_dssp             HHHHHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHHHHHcCCCEE
Confidence            2457888889999999965

>1icp_A OPR1, 12-oxophytodienoate reductase 1; beta-alpha-barrel, protein-FMN-PEG complex, oxidoreductase; HET: FMN 2PE; 1.90A {Solanum lycopersicum} SCOP: c.1.4.1 PDB: 1icq_A* 1ics_A* 3hgr_A* 1vji_A* 2q3r_A*

Probab=87.07  E-value=4.9  Score=39.70  Aligned_cols=140  Identities=12%  Similarity=-0.004  Sum_probs=80.6

Q ss_pred             HHHHHcCCCEEEEeccC--------chH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-CC-cEEEEEeeeecCC-CCCCC
Q 015894          179 EAAVAAGAKEVAIFASA--------SES--FSKSNINCTIEDSLIRYRDVALAAREL-SI-PVRGYLSCVVGCP-VEGMV  245 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~~--------Sd~--~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~-~v~~~l~~~fg~~-~~~r~  245 (398)
                      ++|.++|.|.|.|-..-        |+.  +....+|-+.++-.+.+.++++.+|+. |. .|.+-++...... .....
T Consensus       174 ~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~~~V~vrls~~~~~~g~~~~~  253 (376)
T 1icp_A          174 RNAIEAGFDGVEIHGAHGYLIDQFMKDQVNDRSDKYGGSLENRCRFALEIVEAVANEIGSDRVGIRISPFAHYNEAGDTN  253 (376)
T ss_dssp             HHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTTCCTTTCCCSC
T ss_pred             HHHHHcCCCEEEEcCccchhhhhccCCcccCCCCccCccHHHhHHHHHHHHHHHHHHhcCCceEEEeccccccCCCCCCC
Confidence            46678999998886541        121  122345566777777778888887764 43 5555454210000 01234


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEccCc-CcCCHH-HHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhC-CCEEe
Q 015894          246 PPSKVAYVSKQLYDMGCSEISLGDTI-GVGTPG-TVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMG-ISTVD  322 (398)
Q Consensus       246 ~~~~l~~~a~~l~~~Gad~I~L~DT~-G~~~P~-~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aG-a~~VD  322 (398)
                      +.+...++++.+.++|++.|.+..-. ....|. ...++++.+++.++. ||..=.--+    ...+..+++.| ||.|-
T Consensus       254 ~~~~~~~la~~le~~Gvd~i~v~~~~~~~~~~~~~~~~~~~~vr~~~~i-Pvi~~G~i~----~~~a~~~l~~g~aD~V~  328 (376)
T 1icp_A          254 PTALGLYMVESLNKYDLAYCHVVEPRMKTAWEKIECTESLVPMRKAYKG-TFIVAGGYD----REDGNRALIEDRADLVA  328 (376)
T ss_dssp             HHHHHHHHHHHHGGGCCSEEEEECCSCCC------CCCCSHHHHHHCCS-CEEEESSCC----HHHHHHHHHTTSCSEEE
T ss_pred             CHHHHHHHHHHHHHcCCCEEEEcCCcccCCCCccccHHHHHHHHHHcCC-CEEEeCCCC----HHHHHHHHHCCCCcEEe
Confidence            56778899999999999998885311 001121 112456777777753 444322222    35667788887 77664


Q ss_pred             e
Q 015894          323 S  323 (398)
Q Consensus       323 ~  323 (398)
                      .
T Consensus       329 ~  329 (376)
T 1icp_A          329 Y  329 (376)
T ss_dssp             E
T ss_pred             e
Confidence            3

>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae}

Probab=87.04  E-value=2.8  Score=40.35  Aligned_cols=82  Identities=13%  Similarity=0.088  Sum_probs=69.5

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcC---cCCHHHHHHHHHHHHhhCC-CCeEEEEe-CCccchHHHHHHHHHHhC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIG---VGTPGTVIPMLEAVLDAVP-VDKLAVHF-HDTYGQALSNILASLQMG  317 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~lv~~l~~~~p-~~~l~~H~-Hnd~GlA~ANalaAl~aG  317 (398)
                      +..|.+.+.++++.+.+.|++.|.++-|.|   .++.++-.++++.+.+... .+++-+|. +|+..-++..+..|-++|
T Consensus        23 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~~Er~~v~~~~~~~~~grvpViaGvg~~~t~~ai~la~~A~~~G  102 (311)
T 3h5d_A           23 GSINFDAIPALIEHLLAHHTDGILLAGTTAESPTLTHDEELELFAAVQKVVNGRVPLIAGVGTNDTRDSIEFVKEVAEFG  102 (311)
T ss_dssp             SSBCTTHHHHHHHHHHHTTCCCEEESSTTTTGGGSCHHHHHHHHHHHHHHSCSSSCEEEECCCSSHHHHHHHHHHHHHSC
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCcCHHHHHHHHHHHHhcC
Confidence            568889999999999999999999999999   5778888899999988763 46777765 678889999999999999


Q ss_pred             C-CEEeec
Q 015894          318 I-STVDSS  324 (398)
Q Consensus       318 a-~~VD~S  324 (398)
                      + +.+=..
T Consensus       103 a~davlv~  110 (311)
T 3h5d_A          103 GFAAGLAI  110 (311)
T ss_dssp             CCSEEEEE
T ss_pred             CCcEEEEc
Confidence            7 876543

>1ps9_A 2,4-dienoyl-COA reductase; iron-sulfur, TIM barrel, flavodoxin, flavin, electron transfer, hydride transfer, oxidoreductase; HET: FAD FMN NAP MDE; 2.20A {Escherichia coli} SCOP: c.1.4.1 c.3.1.1 c.4.1.1

Probab=86.99  E-value=3.2  Score=43.82  Aligned_cols=116  Identities=13%  Similarity=0.154  Sum_probs=73.7

Q ss_pred             HHHHHHHHHHHHHHHhCCCcEEEEEeeeecC---------CCC-----CCCCH------------HHHHHHHHHHHhCCC
Q 015894          209 EDSLIRYRDVALAARELSIPVRGYLSCVVGC---------PVE-----GMVPP------------SKVAYVSKQLYDMGC  262 (398)
Q Consensus       209 ~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~---------~~~-----~r~~~------------~~l~~~a~~l~~~Ga  262 (398)
                      ++.++..+.+++.+++.|-.+.+.|... |-         |-.     ...+|            +.+.+.++.+.++|.
T Consensus        77 ~~~~~~~~~~~~~vh~~g~~i~~Ql~h~-Gr~~~~~~~~~ps~~~~~~~~~~p~~~t~~ei~~~i~~~~~aA~~a~~aGf  155 (671)
T 1ps9_A           77 ASQIPHHRTITEAVHQEGGKIALQILHT-GRYSYQPHLVAPSALQAPINRFVPHELSHEEILQLIDNFARCAQLAREAGY  155 (671)
T ss_dssp             GGGHHHHHHHHHHHHHTTCCEEEEECCC-GGGSBSTTCEESSSCCCTTCSSCCEECCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHhcCCEEEEEeccC-CcccCCCCCcCCCCcccccCCCCCccCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence            3456777788888899998887777652 10         000     01122            466677888889999


Q ss_pred             CEEEEc-------------------cCcCcC---CHHHHHHHHHHHHhhCC-CCeEEEEe------C--CccchHHHHHH
Q 015894          263 SEISLG-------------------DTIGVG---TPGTVIPMLEAVLDAVP-VDKLAVHF------H--DTYGQALSNIL  311 (398)
Q Consensus       263 d~I~L~-------------------DT~G~~---~P~~v~~lv~~l~~~~p-~~~l~~H~------H--nd~GlA~ANal  311 (398)
                      |.|.|-                   |-.|..   .+..+.++++++|+.++ +.+|.+..      |  .+...++.-+.
T Consensus       156 d~veih~~~gyl~~qFlsp~~n~r~d~yGgs~~~r~r~~~eiv~avr~~vG~~~~v~vrls~~~~~~~g~~~~~~~~~a~  235 (671)
T 1ps9_A          156 DGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLDLVEDGGTFAETVELAQ  235 (671)
T ss_dssp             SEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEECCSTTCCCHHHHHHHHH
T ss_pred             CEEEEccccchHHHHhCCCccCCCcCcCCCcHHHHHHHHHHHHHHHHHHcCCCceEEEEECccccCCCCCCHHHHHHHHH
Confidence            998873                   333432   24558889999999884 55665522      2  22333444444


Q ss_pred             HHHHhCCCEEeecc
Q 015894          312 ASLQMGISTVDSSV  325 (398)
Q Consensus       312 aAl~aGa~~VD~Sv  325 (398)
                      +.-++|+++|+++.
T Consensus       236 ~l~~~g~d~i~v~~  249 (671)
T 1ps9_A          236 AIEAAGATIINTGI  249 (671)
T ss_dssp             HHHHHTCSEEEEEE
T ss_pred             HHHhcCCCEEEcCC
Confidence            55579999999864

>1ceo_A Cellulase CELC; glycosyl hydrolase, family A/5 of glycosyl hydrolases, cellulose degradation; 1.90A {Clostridium thermocellum} SCOP: c.1.8.3 PDB: 1cen_A 1cec_A

Probab=86.96  E-value=5.4  Score=37.89  Aligned_cols=126  Identities=13%  Similarity=0.030  Sum_probs=70.3

Q ss_pred             CHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC------CCCCH
Q 015894          174 NLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE------GMVPP  247 (398)
Q Consensus       174 n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~------~r~~~  247 (398)
                      +.++++...+.|+..||+.+.-.........+.-.+..++.+.++|+.|+++|+.|...+-..-|....      .-.++
T Consensus        30 ~~~d~~~i~~~G~n~vRi~i~~~~~~~~~~~g~~~~~~~~~l~~~v~~a~~~Gi~vildlh~~~g~~~~~~~~~~~~~~~  109 (343)
T 1ceo_A           30 TEKDIETIAEAGFDHVRLPFDYPIIESDDNVGEYKEDGLSYIDRCLEWCKKYNLGLVLDMHHAPGYRFQDFKTSTLFEDP  109 (343)
T ss_dssp             CHHHHHHHHHHTCCEEEEEEEGGGTBCSSSTTCBCHHHHHHHHHHHHHHHHTTCEEEEEEEECCC--------CCTTTCH
T ss_pred             CHHHHHHHHHcCCCEEEecCCHHHhccccCCCcccHHHHHHHHHHHHHHHHCCCEEEEEecCCCccccCCCCcccCcCCH
Confidence            467888899999999999876332211111112235678999999999999999987666543221110      11222


Q ss_pred             ---HHHHHHHHHHHh-CCC--C--EEEEccCcCcCCHHH----HHHHHHHHHhhCCCCeEEEEe
Q 015894          248 ---SKVAYVSKQLYD-MGC--S--EISLGDTIGVGTPGT----VIPMLEAVLDAVPVDKLAVHF  299 (398)
Q Consensus       248 ---~~l~~~a~~l~~-~Ga--d--~I~L~DT~G~~~P~~----v~~lv~~l~~~~p~~~l~~H~  299 (398)
                         +.+.++.+.+.+ ++-  .  .+.|..=-....+..    +.++++++|+.-|..+|-++.
T Consensus       110 ~~~~~~~~~~~~ia~~~~~~~~v~~~el~NEP~~~~~~~~~~~~~~~~~~IR~~~p~~~i~v~~  173 (343)
T 1ceo_A          110 NQQKRFVDIWRFLAKRYINEREHIAFELLNQVVEPDSTRWNKLMLECIKAIREIDSTMWLYIGG  173 (343)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCCSSEEEECCSCCCCSSSHHHHHHHHHHHHHHHHHCSSCCEEEEC
T ss_pred             HHHHHHHHHHHHHHHHhcCCCCeEEEEeccCCCCcchHHHHHHHHHHHHHHHhhCCCCEEEEeC
Confidence               334444444432 221  1  223322111112333    346778888877876677774

>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}

Probab=86.95  E-value=6.2  Score=38.80  Aligned_cols=127  Identities=15%  Similarity=0.205  Sum_probs=71.8

Q ss_pred             HHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEE-EeCCHhhHHHHHHcCCCEEEEeccCchH--
Q 015894          122 VELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPV-LTPNLKGFEAAVAAGAKEVAIFASASES--  198 (398)
Q Consensus       122 ~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~-l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~--  198 (398)
                      .+.++.+.++|++.|++......   |  ....+.++.+++.-+..+.+ -+.+.+.++.+.++|+|.|.+....-.+  
T Consensus       107 ~e~a~~l~eaGad~I~ld~a~G~---~--~~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~aGaD~I~VG~~~Gs~~~  181 (361)
T 3khj_A          107 IERAKLLVEAGVDVIVLDSAHGH---S--LNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIENGADGIKVGIGPGSICT  181 (361)
T ss_dssp             HHHHHHHHHTTCSEEEECCSCCS---B--HHHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHHTTCSEEEECSSCCTTCC
T ss_pred             HHHHHHHHHcCcCeEEEeCCCCC---c--HHHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHHcCcCEEEEecCCCcCCC
Confidence            67788899999999998643210   0  01112333334322555443 4567888999999999999983211111  


Q ss_pred             -HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcc
Q 015894          199 -FSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGD  269 (398)
Q Consensus       199 -~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~D  269 (398)
                       ......+..   .+..+.++.+.+++.+++|.+         +.+-.+++.+.+    +.++||+.+.+.-
T Consensus       182 tr~~~g~g~p---~~~~i~~v~~~~~~~~iPVIA---------~GGI~~~~di~k----ala~GAd~V~vGs  237 (361)
T 3khj_A          182 TRIVAGVGVP---QITAIEKCSSVASKFGIPIIA---------DGGIRYSGDIGK----ALAVGASSVMIGS  237 (361)
T ss_dssp             HHHHTCBCCC---HHHHHHHHHHHHHHHTCCEEE---------ESCCCSHHHHHH----HHHHTCSEEEEST
T ss_pred             cccccCCCCC---cHHHHHHHHHHHhhcCCeEEE---------ECCCCCHHHHHH----HHHcCCCEEEECh
Confidence             111112222   234455555666667877642         223345655444    3357999887763

>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}

Probab=86.95  E-value=10  Score=36.36  Aligned_cols=15  Identities=7%  Similarity=-0.062  Sum_probs=9.2

Q ss_pred             CCCccHHHHHHHHHh
Q 015894          338 SGNVATEDVVYMLNG  352 (398)
Q Consensus       338 aGNa~lE~vv~~L~~  352 (398)
                      .+|..-+.++...+.
T Consensus       230 ~an~~P~~~~~l~~a  244 (315)
T 3na8_A          230 APNLIPTLNGQLYQA  244 (315)
T ss_dssp             GGGTCHHHHHHHHHH
T ss_pred             hhhhCHHHHHHHHHH
Confidence            556666666665553

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=86.91  E-value=6.1  Score=40.64  Aligned_cols=129  Identities=16%  Similarity=0.170  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEE-EeCCHhhHHHHHHcCCCEEEEeccCch
Q 015894          120 VKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPV-LTPNLKGFEAAVAAGAKEVAIFASASE  197 (398)
Q Consensus       120 ~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~-l~~n~~~ie~a~~~Gv~~v~i~~~~Sd  197 (398)
                      +..+.++.|.++|++.|++.... +.    .....+.++.++ ..++..+.+ -+.+.++.+.+.++|+|.|.+-...-.
T Consensus       256 d~~era~aLveaGvd~I~Id~a~-g~----~~~v~~~i~~i~~~~~~~~vi~g~v~t~e~a~~~~~aGad~i~vg~g~gs  330 (511)
T 3usb_A          256 DAMTRIDALVKASVDAIVLDTAH-GH----SQGVIDKVKEVRAKYPSLNIIAGNVATAEATKALIEAGANVVKVGIGPGS  330 (511)
T ss_dssp             THHHHHHHHHHTTCSEEEEECSC-TT----SHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHHHTCSEEEECSSCST
T ss_pred             chHHHHHHHHhhccceEEecccc-cc----hhhhhhHHHHHHHhCCCceEEeeeeccHHHHHHHHHhCCCEEEECCCCcc
Confidence            44677889999999999998532 11    112234444454 345554443 245778889999999999987322111


Q ss_pred             HH---HhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcc
Q 015894          198 SF---SKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGD  269 (398)
Q Consensus       198 ~~---~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~D  269 (398)
                      ++   ....++..   .+..+.++.+.+++.+++|.+         +.+-.++..+.+.    .++||+.+.+.-
T Consensus       331 i~~~~~~~g~g~p---~~~~l~~v~~~~~~~~iPVIa---------~GGI~~~~di~ka----la~GA~~V~vGs  389 (511)
T 3usb_A          331 ICTTRVVAGVGVP---QLTAVYDCATEARKHGIPVIA---------DGGIKYSGDMVKA----LAAGAHVVMLGS  389 (511)
T ss_dssp             TCCHHHHHCCCCC---HHHHHHHHHHHHHTTTCCEEE---------ESCCCSHHHHHHH----HHTTCSEEEEST
T ss_pred             ccccccccCCCCC---cHHHHHHHHHHHHhCCCcEEE---------eCCCCCHHHHHHH----HHhCchhheecH
Confidence            11   01112222   244556667777888887742         2344456654443    358999887764

>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}

Probab=86.89  E-value=22  Score=34.01  Aligned_cols=155  Identities=14%  Similarity=0.131  Sum_probs=86.5

Q ss_pred             HHHHHHHHhcCC-CEEEEecCCCCCcccCCCCHHHHHHHHH---hccCCcEE--EEe--CC-HhhHHHHHHcCCCEEEEe
Q 015894          122 VELIKLLVSSGL-AVVEATSFVSPKWVPQLADAKDVMAAIQ---NVEGARFP--VLT--PN-LKGFEAAVAAGAKEVAIF  192 (398)
Q Consensus       122 ~~ia~~L~~aGv-~~IEvG~~~~~~~~p~~~D~~~v~~~i~---~~~~~~l~--~l~--~n-~~~ie~a~~~Gv~~v~i~  192 (398)
                      .+++....++|. -.|..++          .+++++.+.++   +..+..+.  .++  +. .+.++.+.+.|++.|.+.
T Consensus        40 ~~la~av~~aGglG~i~~~~----------~~~~~l~~~i~~i~~~~~~p~gVnl~~~~~~~~~~~~~~~~~g~d~V~l~  109 (326)
T 3bo9_A           40 PTLAAAVSEAGGLGIIGSGA----------MKPDDLRKAISELRQKTDKPFGVNIILVSPWADDLVKVCIEEKVPVVTFG  109 (326)
T ss_dssp             HHHHHHHHHTTSBEEEECTT----------CCHHHHHHHHHHHHTTCSSCEEEEEETTSTTHHHHHHHHHHTTCSEEEEE
T ss_pred             HHHHHHHHhCCCcEEeCCCC----------CCHHHHHHHHHHHHHhcCCCEEEEEeccCCCHHHHHHHHHHCCCCEEEEC
Confidence            457777788874 3332211          23444444444   33233333  233  22 346788889999999875


Q ss_pred             ccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccC-c
Q 015894          193 ASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDT-I  271 (398)
Q Consensus       193 ~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT-~  271 (398)
                      ...           . .       +.++.+++.|+.+...+           .+++    .++.+.+.|+|.|.+-.. .
T Consensus       110 ~g~-----------p-~-------~~~~~l~~~g~~v~~~v-----------~s~~----~a~~a~~~GaD~i~v~g~~~  155 (326)
T 3bo9_A          110 AGN-----------P-T-------KYIRELKENGTKVIPVV-----------ASDS----LARMVERAGADAVIAEGMES  155 (326)
T ss_dssp             SSC-----------C-H-------HHHHHHHHTTCEEEEEE-----------SSHH----HHHHHHHTTCSCEEEECTTS
T ss_pred             CCC-----------c-H-------HHHHHHHHcCCcEEEEc-----------CCHH----HHHHHHHcCCCEEEEECCCC
Confidence            432           1 1       23456677888775322           2333    355677899999888431 1


Q ss_pred             CcC-CHHHHHHHHHHHHhhCCCCeEEEEeCCccchH-HHHHHHHHHhCCCEEeecc
Q 015894          272 GVG-TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQA-LSNILASLQMGISTVDSSV  325 (398)
Q Consensus       272 G~~-~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA-~ANalaAl~aGa~~VD~Sv  325 (398)
                      |.. -+....+++..+++.+. +||-.=    -|.. ..|+.+++.+||+.|+..-
T Consensus       156 GG~~G~~~~~~ll~~i~~~~~-iPviaa----GGI~~~~dv~~al~~GA~gV~vGs  206 (326)
T 3bo9_A          156 GGHIGEVTTFVLVNKVSRSVN-IPVIAA----GGIADGRGMAAAFALGAEAVQMGT  206 (326)
T ss_dssp             SEECCSSCHHHHHHHHHHHCS-SCEEEE----SSCCSHHHHHHHHHHTCSEEEESH
T ss_pred             CccCCCccHHHHHHHHHHHcC-CCEEEE----CCCCCHHHHHHHHHhCCCEEEech
Confidence            211 11123356667766552 345443    3555 5677788889999887653

>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa}

Probab=86.84  E-value=2.9  Score=40.38  Aligned_cols=82  Identities=15%  Similarity=0.059  Sum_probs=69.0

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcCc---CCHHHHHHHHHHHHhhC-CCCeEEEEe-CCccchHHHHHHHHHHhC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGV---GTPGTVIPMLEAVLDAV-PVDKLAVHF-HDTYGQALSNILASLQMG  317 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~-p~~~l~~H~-Hnd~GlA~ANalaAl~aG  317 (398)
                      +..|.+.+.++++.+.+.|++.|.++-|.|-   ++.++-.++++.+.+.. ..++|-++. +|+..-++..+..|-++|
T Consensus        40 g~iD~~~l~~lv~~li~~Gv~Gi~v~GtTGE~~~Ls~~Er~~v~~~~v~~~~grvpViaGvg~~~t~~ai~la~~A~~~G  119 (315)
T 3na8_A           40 GGLDLPALGRSIERLIDGGVHAIAPLGSTGEGAYLSDPEWDEVVDFTLKTVAHRVPTIVSVSDLTTAKTVRRAQFAESLG  119 (315)
T ss_dssp             SSBCHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcC
Confidence            5789999999999999999999999999996   56788888888888765 345677765 688999999999999999


Q ss_pred             CCEEeec
Q 015894          318 ISTVDSS  324 (398)
Q Consensus       318 a~~VD~S  324 (398)
                      |+.+=+.
T Consensus       120 adavlv~  126 (315)
T 3na8_A          120 AEAVMVL  126 (315)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEC
Confidence            9977553

>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A

Probab=86.68  E-value=14  Score=34.30  Aligned_cols=166  Identities=10%  Similarity=0.092  Sum_probs=87.8

Q ss_pred             HHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCCHhhHHHHHHcCCCEEEEeccCchHHHhh
Q 015894          123 ELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKS  202 (398)
Q Consensus       123 ~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~  202 (398)
                      +.++.+.++|.|.||+|.-..   + ...+..++++.+|+ .++.+..+..|...+    ..|+|.+-+..=.|.-    
T Consensus        27 ~~l~~~~~~GtDaI~vGgs~g---v-t~~~~~~~v~~ik~-~~~Piil~p~~~~~~----~~gaD~il~pslln~~----   93 (235)
T 3w01_A           27 DDLDAICMSQTDAIMIGGTDD---V-TEDNVIHLMSKIRR-YPLPLVLEISNIESV----MPGFDFYFVPTVLNST----   93 (235)
T ss_dssp             HHHHHHHTSSCSEEEECCSSC---C-CHHHHHHHHHHHTT-SCSCEEEECCCSTTC----CTTCSEEEEEEETTBS----
T ss_pred             HHHHHHHHcCCCEEEECCcCC---c-CHHHHHHHHHHhcC-cCCCEEEecCCHHHh----hcCCCEEEEccccCCC----
Confidence            345567899999999997321   1 01123344444444 444444444465443    4589977664322221    


Q ss_pred             hcCCCHHHHHHHHHHHHHHHHhCCC-----cE--EEEEeeeecCCCCCC---------CCHHHHHHHHHHHHh-CCCCEE
Q 015894          203 NINCTIEDSLIRYRDVALAARELSI-----PV--RGYLSCVVGCPVEGM---------VPPSKVAYVSKQLYD-MGCSEI  265 (398)
Q Consensus       203 ~~~~s~~~~l~~~~~~v~~ak~~G~-----~v--~~~l~~~fg~~~~~r---------~~~~~l~~~a~~l~~-~Gad~I  265 (398)
                      +-.+    ...   .-++.+|+.|+     ++  ++|+..   .|....         .+++.+...+..+.+ +|-..|
T Consensus        94 ~~~~----i~g---~~~~a~~~~gl~~~~~e~i~~gYivv---~p~s~v~~v~~a~~~~~~e~iaa~A~~a~~~~g~~~v  163 (235)
T 3w01_A           94 DVAF----HNG---TLLEALKTYGHSIDFEEVIFEGYVVC---NADSKVAKHTKANTDLTTEDLEAYAQMVNHMYRLPVM  163 (235)
T ss_dssp             SGGG----TTH---HHHHHHHHHGGGCCGGGEEEEEEEEC---CSSSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCCSEE
T ss_pred             Ccch----hhh---HHHHHHHHcCCCCcccceeeeeEEEE---CCCCChhhcccCCcCCCHHHHHHHHHHHHHHcCCCEE
Confidence            1111    111   11233677887     54  456653   233221         135666666653333 488889


Q ss_pred             EEccCcCcCCHHHHHHHHHHHHhhCCCCeEEE--EeCCccchHHHHHHHHHHhCCCEE
Q 015894          266 SLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAV--HFHDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       266 ~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~--H~Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                      |+.- .|.--   -.++++.+++..++.|+.+  -.++      .-....+..||+.|
T Consensus       164 Y~e~-sG~~g---~~~~v~~ir~~~~~~pv~vGfGI~~------~e~a~~~~~gAD~V  211 (235)
T 3w01_A          164 YIEY-SGIYG---DVSKVQAVSEHLTETQLFYGGGISS------EQQATEMAAIADTI  211 (235)
T ss_dssp             EEEC-TTSCC---CHHHHHHHHTTCSSSEEEEESCCCS------HHHHHHHHTTSSEE
T ss_pred             EEec-CCCcC---CHHHHHHHHHhcCCCCEEEECCcCC------HHHHHHHHcCCCEE
Confidence            8866 67633   4778888888774445444  3333      22223344488855

>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ...

Probab=86.68  E-value=8.3  Score=38.01  Aligned_cols=105  Identities=12%  Similarity=0.074  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHHHh-----CCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCc-------------
Q 015894          210 DSLIRYRDVALAARE-----LSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTI-------------  271 (398)
Q Consensus       210 ~~l~~~~~~v~~ak~-----~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~-------------  271 (398)
                      +.+..+...++.+++     ..++|.+-+.     |+   .+.+.+.++++.+.++|+|.|.+-.|.             
T Consensus       199 ~~l~~ll~av~~~~~~~~~~~~~Pv~vKi~-----p~---~~~~~~~~ia~~~~~aGadgi~v~ntt~~r~~~~~~~~~~  270 (367)
T 3zwt_A          199 AELRRLLTKVLQERDGLRRVHRPAVLVKIA-----PD---LTSQDKEDIASVVKELGIDGLIVTNTTVSRPAGLQGALRS  270 (367)
T ss_dssp             HHHHHHHHHHHHHHHTSCGGGCCEEEEEEC-----SC---CCHHHHHHHHHHHHHHTCCEEEECCCBSCCCTTCCCTTTT
T ss_pred             HHHHHHHHHHHHHHhhccccCCceEEEEeC-----CC---CCHHHHHHHHHHHHHcCCCEEEEeCCCccccccccccccc
Confidence            445555455544432     3566654443     32   356789999999999999999988775             


Q ss_pred             --CcCCH----HHHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHHHHHhCCCEEeecc
Q 015894          272 --GVGTP----GTVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILASLQMGISTVDSSV  325 (398)
Q Consensus       272 --G~~~P----~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv  325 (398)
                        |.+++    ....++|..+++.++ .++|-.=+-=..   ..-+..++++||+.|...-
T Consensus       271 ~~gGlSG~~i~p~a~~~v~~i~~~v~~~ipvI~~GGI~s---~~da~~~l~~GAd~V~vgr  328 (367)
T 3zwt_A          271 ETGGLSGKPLRDLSTQTIREMYALTQGRVPIIGVGGVSS---GQDALEKIRAGASLVQLYT  328 (367)
T ss_dssp             SSSEEEEGGGHHHHHHHHHHHHHHTTTCSCEEEESSCCS---HHHHHHHHHHTCSEEEESH
T ss_pred             ccCCcCCcccchhHHHHHHHHHHHcCCCceEEEECCCCC---HHHHHHHHHcCCCEEEECH
Confidence              22221    223478888888885 455554333222   2556777788999876543

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=86.62  E-value=3.2  Score=46.30  Aligned_cols=135  Identities=16%  Similarity=0.199  Sum_probs=76.9

Q ss_pred             HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecCCCCCCCCHHHHHHHHHH
Q 015894          178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAREL-SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQ  256 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~  256 (398)
                      ++++.+.|+|.|.+-++.-....+..+|.+.....+.+.++++.+|+. ++.|.+-+.     ++     .+.+.++++.
T Consensus       654 a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~iv~~v~~~~~~Pv~vK~~-----~~-----~~~~~~~a~~  723 (1025)
T 1gte_A          654 SRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLT-----PN-----VTDIVSIARA  723 (1025)
T ss_dssp             HHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHCSSCEEEEEC-----SC-----SSCHHHHHHH
T ss_pred             HHHHHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHHHHHHHHHhhCCceEEEeC-----CC-----hHHHHHHHHH
Confidence            345557899988885542111111222322222234455666666654 777764443     22     2246778889


Q ss_pred             HHhCCCCEEEEccCc-------------------------CcCCHHH---HHHHHHHHHhhCCCCeEEEEeCCccchHHH
Q 015894          257 LYDMGCSEISLGDTI-------------------------GVGTPGT---VIPMLEAVLDAVPVDKLAVHFHDTYGQALS  308 (398)
Q Consensus       257 l~~~Gad~I~L~DT~-------------------------G~~~P~~---v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~A  308 (398)
                      +.++|+|.|.+..|.                         |...|..   ..+++..+++.+|.++|-.=+--..+..  
T Consensus       724 ~~~~G~d~i~v~Nt~~~~~~~~~~~~~~~~~~~~gr~~~gg~sg~~~~~~~~~~v~~v~~~~~~ipvi~~GGI~s~~d--  801 (1025)
T 1gte_A          724 AKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALPGFPILATGGIDSAES--  801 (1025)
T ss_dssp             HHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHSTTCCEEEESSCCSHHH--
T ss_pred             HHHcCCCEEEEeccccccccccccccccccccccccccCCCCCcccchhHHHHHHHHHHHHcCCCCEEEecCcCCHHH--
Confidence            999999999984331                         1112211   1367888888886667766555554444  


Q ss_pred             HHHHHHHhCCCEEeecc
Q 015894          309 NILASLQMGISTVDSSV  325 (398)
Q Consensus       309 NalaAl~aGa~~VD~Sv  325 (398)
                       +..++.+||+.|-..-
T Consensus       802 -a~~~l~~Ga~~v~vg~  817 (1025)
T 1gte_A          802 -GLQFLHSGASVLQVCS  817 (1025)
T ss_dssp             -HHHHHHTTCSEEEESH
T ss_pred             -HHHHHHcCCCEEEEee
Confidence             4455568999876654

>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*

Probab=86.59  E-value=4.7  Score=41.51  Aligned_cols=67  Identities=16%  Similarity=0.123  Sum_probs=51.8

Q ss_pred             HHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          251 AYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       251 ~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      .+.++.+.++|++.|.+-.+-|  .+..+.++++.+++.+|+.++..-.=.    ....+..++++||+.|.+
T Consensus       258 ~era~aLveaGvd~I~Id~a~g--~~~~v~~~i~~i~~~~~~~~vi~g~v~----t~e~a~~~~~aGad~i~v  324 (511)
T 3usb_A          258 MTRIDALVKASVDAIVLDTAHG--HSQGVIDKVKEVRAKYPSLNIIAGNVA----TAEATKALIEAGANVVKV  324 (511)
T ss_dssp             HHHHHHHHHTTCSEEEEECSCT--TSHHHHHHHHHHHHHCTTSEEEEEEEC----SHHHHHHHHHHTCSEEEE
T ss_pred             HHHHHHHHhhccceEEeccccc--chhhhhhHHHHHHHhCCCceEEeeeec----cHHHHHHHHHhCCCEEEE
Confidence            4557788899999998876644  567888999999999997777653322    235578889999999997

>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}

Probab=86.56  E-value=3.6  Score=40.02  Aligned_cols=82  Identities=12%  Similarity=0.007  Sum_probs=68.4

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcC---cCCHHHHHHHHHHHHhhCC-CCeEEEE-eCCccchHHHHHHHHHHhC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIG---VGTPGTVIPMLEAVLDAVP-VDKLAVH-FHDTYGQALSNILASLQMG  317 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~lv~~l~~~~p-~~~l~~H-~Hnd~GlA~ANalaAl~aG  317 (398)
                      +..|.+.+.++++.+.+.|++.|.++-|.|   .+++++-.++++.+++... .++|-++ ++|+..-++..+..|-++|
T Consensus        50 g~iD~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~G  129 (332)
T 2r8w_A           50 GRVDIEAFSALIARLDAAEVDSVGILGSTGIYMYLTREERRRAIEAAATILRGRRTLMAGIGALRTDEAVALAKDAEAAG  129 (332)
T ss_dssp             CCBCHHHHHHHHHHHHHHTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECCSSHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcC
Confidence            578999999999999999999999999998   5678888888888887654 4566554 5678888999999999999


Q ss_pred             CCEEeec
Q 015894          318 ISTVDSS  324 (398)
Q Consensus       318 a~~VD~S  324 (398)
                      |+.|=+.
T Consensus       130 adavlv~  136 (332)
T 2r8w_A          130 ADALLLA  136 (332)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEC
Confidence            9977544

>4hb7_A Dihydropteroate synthase; transferase; 1.95A {Staphylococcus aureus} PDB: 1ad1_A 1ad4_A*

Probab=86.48  E-value=8.8  Score=36.41  Aligned_cols=123  Identities=16%  Similarity=0.185  Sum_probs=75.7

Q ss_pred             HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894          178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL  257 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l  257 (398)
                      .+..++.|++.|.|-.-.+-..   .-..+.+|-++++..+++..++.++.+.      .   |..+  +    ++++++
T Consensus        36 a~~m~~~GAdiIDIGgeSTRPg---a~~vs~eeE~~Rv~pvi~~l~~~~v~iS------I---DT~~--~----~Va~~a   97 (270)
T 4hb7_A           36 VKAMIDEGADIIDVGGVSTRPG---HEMVTLEEELNRVLPVVEAIVGFDVKIS------V---DTFR--S----EVAEAC   97 (270)
T ss_dssp             HHHHHHTTCSEEEEESCCCSTT---CCCCCHHHHHHHHHHHHHHHTTSSSEEE------E---ECSC--H----HHHHHH
T ss_pred             HHHHHHCCCCEEEECCccCCCC---CCCCchHHHHHHHHHHHHHhhcCCCeEE------E---ECCC--H----HHHHHH
Confidence            3455779999999953222111   1235788999999999999988776554      1   3322  2    577788


Q ss_pred             HhCCCCEEEEccCc-CcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccch----------HHHHHHHHHHhCCC----EEe
Q 015894          258 YDMGCSEISLGDTI-GVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQ----------ALSNILASLQMGIS----TVD  322 (398)
Q Consensus       258 ~~~Gad~I~L~DT~-G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~Gl----------A~ANalaAl~aGa~----~VD  322 (398)
                      .++|++.|+  |-. |...|. +.++++.    +...-+-.|...+...          -....-.|..+|++    ++|
T Consensus        98 l~aGa~iIN--DVs~g~~d~~-m~~~va~----~~~~~vlMH~~~~p~~~~vv~ev~~~l~~~i~~a~~aGI~~~~IilD  170 (270)
T 4hb7_A           98 LKLGVDMIN--DQWAGLYDHR-MFQIVAK----YDAEIILMHNGNGNRDEPVVEEMLTSLLAQAHQAKIAGIPSNKIWLD  170 (270)
T ss_dssp             HHHTCCEEE--ETTTTSSCTH-HHHHHHH----TTCEEEEECCCSSCCSSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEE
T ss_pred             HHhccceec--cccccccchh-HHHHHHH----cCCCeEEeccccCCccccchhHHHHHHHHHHHHHHHcCCCCceEEEe
Confidence            899999765  765 455564 3343332    3222355676554322          12334567889995    778


Q ss_pred             ecc
Q 015894          323 SSV  325 (398)
Q Consensus       323 ~Sv  325 (398)
                      -.+
T Consensus       171 PGi  173 (270)
T 4hb7_A          171 PGI  173 (270)
T ss_dssp             CCT
T ss_pred             CCC
Confidence            843

>1eye_A DHPS 1, dihydropteroate synthase I; alpha-beta barrel, transferase; HET: PMM; 1.70A {Mycobacterium tuberculosis H37RV} SCOP: c.1.21.1

Probab=86.35  E-value=4  Score=38.85  Aligned_cols=74  Identities=16%  Similarity=0.209  Sum_probs=49.6

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcc-Cc--C---cCCHHH---HHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHH
Q 015894          245 VPPSKVAYVSKQLYDMGCSEISLGD-TI--G---VGTPGT---VIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQ  315 (398)
Q Consensus       245 ~~~~~l~~~a~~l~~~Gad~I~L~D-T~--G---~~~P~~---v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~  315 (398)
                      .+++...+.++++.+.|||.|-+.= +.  |   +...++   +...++.+++.  +++|.+++.+-     .-+.+|++
T Consensus        26 ~~~~~a~~~a~~~v~~GAdiIDIGgestrpga~~v~~~eE~~Rv~pvi~~l~~~--~~piSIDT~~~-----~va~aAl~   98 (280)
T 1eye_A           26 LDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRVDPAVETSRVIPVVKELAAQ--GITVSIDTMRA-----DVARAALQ   98 (280)
T ss_dssp             CSHHHHHHHHHHHHHTTCSEEEEECC--------------HHHHHHHHHHHHHT--TCCEEEECSCH-----HHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCCCCHHHHHHHHHHHHHHhhcC--CCEEEEeCCCH-----HHHHHHHH
Confidence            4789999999999999999988772 11  1   111234   44455555543  67899988763     55678899


Q ss_pred             hCCCEEeecc
Q 015894          316 MGISTVDSSV  325 (398)
Q Consensus       316 aGa~~VD~Sv  325 (398)
                      +|+++|+-.-
T Consensus        99 aGa~iINdvs  108 (280)
T 1eye_A           99 NGAQMVNDVS  108 (280)
T ss_dssp             TTCCEEEETT
T ss_pred             cCCCEEEECC
Confidence            9999996443

>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A

Probab=86.30  E-value=1.6  Score=40.94  Aligned_cols=165  Identities=12%  Similarity=0.056  Sum_probs=0.0

Q ss_pred             HHHHHHHhcCCCEEEEecCCCCCc-ccCCCCHHHHHHHHH--hccCCcEEEEeCCHhh----HHHHHHc-CCCEEEEecc
Q 015894          123 ELIKLLVSSGLAVVEATSFVSPKW-VPQLADAKDVMAAIQ--NVEGARFPVLTPNLKG----FEAAVAA-GAKEVAIFAS  194 (398)
Q Consensus       123 ~ia~~L~~aGv~~IEvG~~~~~~~-~p~~~D~~~v~~~i~--~~~~~~l~~l~~n~~~----ie~a~~~-Gv~~v~i~~~  194 (398)
                      ...+.|.+.|.+.||+|.+.+ +. .+.+.+.-+.++.++  .+|++.   .+.+.++    ++.+.++ |.+.|.+.+.
T Consensus        27 ~~~~~l~~~Gad~ielg~pr~-~~~g~~~~~~~~~l~~~~~~~~pn~~---~~~~~~~~~~f~~~a~~agg~~~i~l~i~  102 (264)
T 1xm3_A           27 IQKEAVAVSESDILTFAVRRM-NIFEASQPNFLEQLDLSKYTLLPNTA---GASTAEEAVRIARLAKASGLCDMIKVEVI  102 (264)
T ss_dssp             HHHHHHHHHTCSEEEEETTSS-TTC-------CTTCCGGGSEEEEECT---TCSSHHHHHHHHHHHHHTTCCSSEEECCB
T ss_pred             HHHHHHHHcCCeEEEEccccc-ccCCCCHHHHHHHHHhcCCeEcCCcc---ccCCHHHHHHHHHHHHHcCCCCeEEEeec


Q ss_pred             CchHHHhhhcCCCHHHHHHHHHHHHHHHHhC---CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE-ccC
Q 015894          195 ASESFSKSNINCTIEDSLIRYRDVALAAREL---SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL-GDT  270 (398)
Q Consensus       195 ~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~---G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L-~DT  270 (398)
                      ....           ..++...+.++.++++   |+.+-+...          .+++    .++++.+.|++.|.. .-.
T Consensus       103 ~d~~-----------~~~~e~~~~~~~a~~~~~~g~~vi~~~~----------~~~~----~a~~~~~~gad~v~~~~~~  157 (264)
T 1xm3_A          103 GCSR-----------SLLPDPVETLKASEQLLEEGFIVLPYTS----------DDVV----LARKLEELGVHAIMPGASP  157 (264)
T ss_dssp             CCTT-----------TCCBCHHHHHHHHHHHHHTTCCEEEEEC----------SCHH----HHHHHHHHTCSCBEECSSS
T ss_pred             CCCc-----------ccccchHHHHHHHHHHHCCCeEEEEEcC----------CCHH----HHHHHHHhCCCEEEECCcc


Q ss_pred             cCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchH-HHHHHHHHHhCCCEE
Q 015894          271 IGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQA-LSNILASLQMGISTV  321 (398)
Q Consensus       271 ~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA-~ANalaAl~aGa~~V  321 (398)
                      .|......-.+.++.+++ ..++|+.+-+    |.. ..++..++++||+.|
T Consensus       158 ~Gt~~~~~~~~~l~~i~~-~~~iPviv~g----GI~t~eda~~~~~~GAdgV  204 (264)
T 1xm3_A          158 IGSGQGILNPLNLSFIIE-QAKVPVIVDA----GIGSPKDAAYAMELGADGV  204 (264)
T ss_dssp             TTCCCCCSCHHHHHHHHH-HCSSCBEEES----CCCSHHHHHHHHHTTCSEE
T ss_pred             cCCCCCCCCHHHHHHHHh-cCCCCEEEEe----CCCCHHHHHHHHHcCCCEE

>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...

Probab=86.26  E-value=21  Score=33.13  Aligned_cols=102  Identities=15%  Similarity=0.224  Sum_probs=57.9

Q ss_pred             HHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCc------Cc-------------CC
Q 015894          216 RDVALAARELSIP-VRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTI------GV-------------GT  275 (398)
Q Consensus       216 ~~~v~~ak~~G~~-v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~------G~-------------~~  275 (398)
                      .+..+.+|+.|-. +.++++       .+..+.+...++++.+.+.|+|.|-+.=..      |-             ++
T Consensus         5 ~~~f~~~~~~~~~~~i~~i~-------~gdp~~~~~~~~~~~l~~~GaD~ieig~P~sdp~~DG~~i~~a~~~al~~G~~   77 (268)
T 1qop_A            5 ENLFAQLNDRREGAFVPFVT-------LGDPGIEQSLKIIDTLIDAGADALELGVPFSDPLADGPTIQNANLRAFAAGVT   77 (268)
T ss_dssp             HHHHHHHHHTTCCEEEEEEE-------TTSSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTCCHHHHHHHHHHHHTTCC
T ss_pred             HHHHHHHHhcCCceEEEEee-------CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCccCCCHHHHHHHHHHHHcCCC
Confidence            3444555555544 445554       223456889999999999999977662111      11             12


Q ss_pred             HHHHHHHHHHHHhhCCCCeEEEEe-CCc-cchHHH-HHHHHHHhCCCEEeec
Q 015894          276 PGTVIPMLEAVLDAVPVDKLAVHF-HDT-YGQALS-NILASLQMGISTVDSS  324 (398)
Q Consensus       276 P~~v~~lv~~l~~~~p~~~l~~H~-Hnd-~GlA~A-NalaAl~aGa~~VD~S  324 (398)
                      ...+.++++.+|+.++.+|+++=. -|. +-.++. -+-.+.++|++.|-.-
T Consensus        78 ~~~~~~~v~~ir~~~~~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~  129 (268)
T 1qop_A           78 PAQCFEMLAIIREKHPTIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVA  129 (268)
T ss_dssp             HHHHHHHHHHHHHHCSSSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEET
T ss_pred             HHHHHHHHHHHHhcCCCCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEc
Confidence            344558899999885555655421 111 111122 2334678999966543

>1vc4_A Indole-3-glycerol phosphate synthase; lyase, tryptophan biosynthesis, riken structural genomics/PR initiative, RSGI, structural genomics; 1.80A {Thermus thermophilus} SCOP: c.1.2.4

Probab=86.18  E-value=9.4  Score=35.56  Aligned_cols=115  Identities=13%  Similarity=0.084  Sum_probs=71.5

Q ss_pred             HHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEE--EeCCHhhHHHHHHcCCCEEEEeccCc
Q 015894          119 VVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPV--LTPNLKGFEAAVAAGAKEVAIFASAS  196 (398)
Q Consensus       119 ~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~n~~~ie~a~~~Gv~~v~i~~~~S  196 (398)
                      .+-.++++...+.|...|-+-.  .+.+..  ... +.++.+++..+..+..  +..+..+++.+.++|+|.|.+.... 
T Consensus        65 ~~p~~~A~~~~~~GA~~isvlt--~~~~f~--G~~-~~l~~i~~~v~lPvl~kdfI~d~~qi~~a~~~GAD~VlL~~~~-  138 (254)
T 1vc4_A           65 VDPVEAALAYARGGARAVSVLT--EPHRFG--GSL-LDLKRVREAVDLPLLRKDFVVDPFMLEEARAFGASAALLIVAL-  138 (254)
T ss_dssp             CCHHHHHHHHHHTTCSEEEEEC--CCSSSC--CCH-HHHHHHHHHCCSCEEEESCCCSHHHHHHHHHTTCSEEEEEHHH-
T ss_pred             CCHHHHHHHHHHcCCCEEEEec--chhhhc--cCH-HHHHHHHHhcCCCEEECCcCCCHHHHHHHHHcCCCEEEECccc-
Confidence            4568899999999999998821  122110  123 3344555433333221  2346667889999999999996541 


Q ss_pred             hHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 015894          197 ESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG  268 (398)
Q Consensus       197 d~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~  268 (398)
                       .           +  +.++++++.++++|+.+.+.+.           +.+++    +.+.+.|++.|.+.
T Consensus       139 -l-----------~--~~l~~l~~~a~~lGl~~lvev~-----------~~~E~----~~a~~~gad~IGvn  181 (254)
T 1vc4_A          139 -L-----------G--ELTGAYLEEARRLGLEALVEVH-----------TEREL----EIALEAGAEVLGIN  181 (254)
T ss_dssp             -H-----------G--GGHHHHHHHHHHHTCEEEEEEC-----------SHHHH----HHHHHHTCSEEEEE
T ss_pred             -h-----------H--HHHHHHHHHHHHCCCeEEEEEC-----------CHHHH----HHHHHcCCCEEEEc
Confidence             0           1  4467778889999988753221           34443    25667888887663

>2zds_A Putative DNA-binding protein; TIM-barrel fold, structural genomics, NPPSFA; 2.30A {Streptomyces coelicolor}

Probab=86.16  E-value=8  Score=36.25  Aligned_cols=177  Identities=15%  Similarity=-0.010  Sum_probs=84.8

Q ss_pred             HHHHHHcCCCEEEEeccCchHHH--------hhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHH
Q 015894          178 FEAAVAAGAKEVAIFASASESFS--------KSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSK  249 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~Sd~~~--------~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~  249 (398)
                      ++.|.+.|++.|.+.........        .....-..+...+.+.++.++|++.|+.+.  +...   +.....+++.
T Consensus       117 i~~A~~lGa~~v~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~--lEn~---~~~~~~~~~~  191 (340)
T 2zds_A          117 ARAAARLGVDTVIGFTGSAIWHLVAMFPPAPESMIERGYQDFADRWNPILDVFDAEGVRFA--HEVH---PSEIAYDYWT  191 (340)
T ss_dssp             HHHHHHHTCSEEEECCCCSSGGGTTCCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCEEE--EECC---TTSSCCSHHH
T ss_pred             HHHHHHcCCCEEEEecCCcCcccccccCCCcccchHHHHHHHHHHHHHHHHHHHHcCCEEE--EEcC---CCcccCCHHH
Confidence            45667789999988644211000        000000123455666777888999998754  3321   1122246666


Q ss_pred             HHHHHHHHHhCC-CCEE-EEccCcCcCCH-HHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccc
Q 015894          250 VAYVSKQLYDMG-CSEI-SLGDTIGVGTP-GTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVS  326 (398)
Q Consensus       250 l~~~a~~l~~~G-ad~I-~L~DT~G~~~P-~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~  326 (398)
                      +.++++   +.+ .+.+ ..-|+.=...- .+..+.++.+    .+-..++|++|..+--.      ...|..  | .-.
T Consensus       192 ~~~ll~---~v~~~~~vg~~~D~~H~~~~g~d~~~~l~~~----~~~i~~vHl~D~~~~~~------~~~g~~--~-~~~  255 (340)
T 2zds_A          192 THRALE---AVGHRPAFGLNFDPSHFVWQDLDPVGFLWDF----RDRIYHVDCKEARKRLD------GRNGRL--G-SHL  255 (340)
T ss_dssp             HHHHHH---HTTTCTTEEEEECCHHHHHTTCCHHHHHHHT----GGGEEEEEECEEEECCC------SSSCTT--C-TTC
T ss_pred             HHHHHH---hcCCCCCeeEEEchhhHHHhCCCHHHHHHHH----HhhEEEEEeccCccccc------cccccc--c-ccC
Confidence            655554   444 3322 23465322111 1222333333    22347889998752100      001111  0 000


Q ss_pred             cCCCC-----CCCCCCCCCccHHHHHHHHHhCCCCCcc--C--------hHHHHHHHHHHHHHhC
Q 015894          327 GLGGC-----PYAKGASGNVATEDVVYMLNGLGVRTNV--D--------IRKLMIAGDFICKHLG  376 (398)
Q Consensus       327 GlGec-----p~a~graGNa~lE~vv~~L~~~Gi~t~i--D--------l~~L~~~~~~v~~~~g  376 (398)
                      +.|.+     ...+ +.|..+...++..|++.|++--+  .        .+.+.+..+++.+.+.
T Consensus       256 ~~~~~~r~~~~~~~-G~G~id~~~i~~~L~~~gy~g~~~lE~~~~~~~~~~~~~~s~~~l~~~~~  319 (340)
T 2zds_A          256 PWGDPRRGWDFVSA-GHGDVPWEDVFRMLRSIDYQGPVSVEWEDAGMDRLQGAPEALTRLKAFDF  319 (340)
T ss_dssp             CTTCTTSSEEEECT-TSSCCCHHHHHHHHHHTTCCSCEEECCCCTTSCHHHHHHHHHHHHHTTCC
T ss_pred             CcccccccceecCC-CCCccCHHHHHHHHHhcCCCccEEEEeeCCCcCHHHHHHHHHHHHHHHHh
Confidence            01110     0012 25789999999999987764211  1        2355555666666554

>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}

Probab=86.03  E-value=2.9  Score=40.29  Aligned_cols=82  Identities=12%  Similarity=0.003  Sum_probs=67.4

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcC---cCCHHHHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHHHHHhCC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIG---VGTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILASLQMGI  318 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANalaAl~aGa  318 (398)
                      +..|.+.+.++++.+.+.|++.|.++-|.|   .+++++-.++++.+.+... .++|-++.=.+..-++..+..|-++||
T Consensus        28 g~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~st~~ai~la~~A~~~Ga  107 (314)
T 3d0c_A           28 REIDWKGLDDNVEFLLQNGIEVIVPNGNTGEFYALTIEEAKQVATRVTELVNGRATVVAGIGYSVDTAIELGKSAIDSGA  107 (314)
T ss_dssp             CCBCHHHHHHHHHHHHHTTCSEECTTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEEECSSHHHHHHHHHHHHHTTC
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEECcccCChhhCCHHHHHHHHHHHHHHhCCCCeEEecCCcCHHHHHHHHHHHHHcCC
Confidence            578999999999999999999999999988   5678888888888887653 466766654466678888999999999


Q ss_pred             CEEeec
Q 015894          319 STVDSS  324 (398)
Q Consensus       319 ~~VD~S  324 (398)
                      +.|=+.
T Consensus       108 davlv~  113 (314)
T 3d0c_A          108 DCVMIH  113 (314)
T ss_dssp             SEEEEC
T ss_pred             CEEEEC
Confidence            977554

>1aj0_A DHPS, dihydropteroate synthase; antibiotic, resistance, transferase, folate, biosynthesis; HET: PH2 SAN; 2.00A {Escherichia coli} SCOP: c.1.21.1 PDB: 1aj2_A* 1ajz_A 3tyz_A* 3tyu_A* 3tzf_A* 3tzn_A

Probab=86.02  E-value=2.1  Score=40.89  Aligned_cols=72  Identities=18%  Similarity=0.260  Sum_probs=52.9

Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEcc-CcCcC--------CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHh
Q 015894          246 PPSKVAYVSKQLYDMGCSEISLGD-TIGVG--------TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQM  316 (398)
Q Consensus       246 ~~~~l~~~a~~l~~~Gad~I~L~D-T~G~~--------~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~a  316 (398)
                      +++...+.++++.+.|||.|-+.= +..-.        ...++..+++.+++.+ +++|.+++.+-     .-+.+|+++
T Consensus        36 ~~~~a~~~a~~~v~~GAdiIDIGgestrPga~~v~~~eE~~rv~pvi~~l~~~~-~~piSIDT~~~-----~va~aAl~a  109 (282)
T 1aj0_A           36 SLIDAVKHANLMINAGATIIDVGGESTRPGAAEVSVEEELQRVIPVVEAIAQRF-EVWISVDTSKP-----EVIRESAKV  109 (282)
T ss_dssp             HHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCCCCHHHHHHHHHHHHHHHHHHC-CCEEEEECCCH-----HHHHHHHHT
T ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCcCCCCCCcCCHHHHHHHHHHHHHHHHhhc-CCeEEEeCCCH-----HHHHHHHHc
Confidence            578888999999999999988775 32111        1234666777777765 57899988763     556788999


Q ss_pred             CCCEEee
Q 015894          317 GISTVDS  323 (398)
Q Consensus       317 Ga~~VD~  323 (398)
                      |+++|+-
T Consensus       110 Ga~iINd  116 (282)
T 1aj0_A          110 GAHIIND  116 (282)
T ss_dssp             TCCEEEE
T ss_pred             CCCEEEE
Confidence            9999954

>1o66_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics; HET: MSE; 1.75A {Neisseria meningitidis serogroup B} SCOP: c.1.12.8 PDB: 1o68_A*

Probab=86.00  E-value=17  Score=34.50  Aligned_cols=140  Identities=16%  Similarity=0.083  Sum_probs=85.8

Q ss_pred             CCcEEEEe-CCHhhHHHHHHcCCCEEEEeccCchHH--HhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecCC
Q 015894          165 GARFPVLT-PNLKGFEAAVAAGAKEVAIFASASESF--SKSNINCTIEDSLIRYRDVALAARELSIP-VRGYLSCVVGCP  240 (398)
Q Consensus       165 ~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~~~Sd~~--~~~~~~~s~~~~l~~~~~~v~~ak~~G~~-v~~~l~~~fg~~  240 (398)
                      +-++.+++ .+..-.+.+-++|++.+-+-.+++-..  .......|.++.+...+.+.+.+   ... |.+      ..|
T Consensus        16 g~~i~~~tayDa~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vTldemi~h~~aV~r~~---~~~~vva------D~p   86 (275)
T 1o66_A           16 GEKIAMLTAYESSFAALMDDAGVEMLLVGDSLGMAVQGRKSTLPVSLRDMCYHTECVARGA---KNAMIVS------DLP   86 (275)
T ss_dssp             TCCEEEEECCSHHHHHHHHHTTCCEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHHC---SSSEEEE------ECC
T ss_pred             CCcEEEEeCcCHHHHHHHHHcCCCEEEECHHHHHHHcCCCCCCCCCHHHHHHHHHHHHhhC---CCCeEEE------ECC
Confidence            44666665 355556677789999886544433210  00112457888887776655543   222 222      234


Q ss_pred             CCC-CCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeC------C------------
Q 015894          241 VEG-MVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFH------D------------  301 (398)
Q Consensus       241 ~~~-r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~H------n------------  301 (398)
                      +.+ ..+++...+-+.++.+.|++.|.|-|.      .++.+.|+++.+.-  +|+--|.=      |            
T Consensus        87 fgsy~~s~~~a~~na~rl~kaGa~aVklEdg------~e~~~~I~al~~ag--IpV~gHiGLtPQs~~~~ggf~v~grt~  158 (275)
T 1o66_A           87 FGAYQQSKEQAFAAAAELMAAGAHMVKLEGG------VWMAETTEFLQMRG--IPVCAHIGLTPQSVFAFGGYKVQGRGG  158 (275)
T ss_dssp             TTSSSSCHHHHHHHHHHHHHTTCSEEEEECS------GGGHHHHHHHHHTT--CCEEEEEESCGGGTTC-----------
T ss_pred             CCCccCCHHHHHHHHHHHHHcCCcEEEECCc------HHHHHHHHHHHHcC--CCeEeeeccCceeecccCCeEEEeChH
Confidence            433 347888888888888899999999997      36777788887642  23333321      1            


Q ss_pred             ccchHHHHHHHHHHhCCCEE
Q 015894          302 TYGQALSNILASLQMGISTV  321 (398)
Q Consensus       302 d~GlA~ANalaAl~aGa~~V  321 (398)
                      ..--++.-+.+-.+|||+.|
T Consensus       159 ~a~~~i~rA~a~~eAGA~~i  178 (275)
T 1o66_A          159 KAQALLNDAKAHDDAGAAVV  178 (275)
T ss_dssp             CHHHHHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHHHHHHcCCcEE
Confidence            11345667777789999855

>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A

Probab=85.99  E-value=1.7  Score=40.76  Aligned_cols=90  Identities=16%  Similarity=0.192  Sum_probs=67.4

Q ss_pred             HHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHH
Q 015894          179 EAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLY  258 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~  258 (398)
                      ....+.|+..|.+|---         |.   +.++.++.+++.|.+.|+.++          -.+-.|.+.+.++.+.+.
T Consensus       175 aml~dmG~~SvKffPM~---------Gl---~~leEl~avAkAca~~g~~lE----------PTGGIdl~Nf~~I~~i~l  232 (275)
T 3m6y_A          175 ALVRDMGGNSLKYFPMK---------GL---AHEEEYRAVAKACAEEGFALE----------PTGGIDKENFETIVRIAL  232 (275)
T ss_dssp             HHHHHHTCCEEEECCCT---------TT---TTHHHHHHHHHHHHHHTCEEE----------EBSSCCTTTHHHHHHHHH
T ss_pred             HHHHHcCCCeeeEeecC---------Cc---ccHHHHHHHHHHHHHcCceEC----------CCCCccHhHHHHHHHHHH
Confidence            44467899999986321         11   346777888999999998443          234578889999999999


Q ss_pred             hCCCCEE-------EEccCcCcCCHHHHHHHHHHHHhhC
Q 015894          259 DMGCSEI-------SLGDTIGVGTPGTVIPMLEAVLDAV  290 (398)
Q Consensus       259 ~~Gad~I-------~L~DT~G~~~P~~v~~lv~~l~~~~  290 (398)
                      ++|+..|       .|--..|.-.|++|++++..+++.+
T Consensus       233 ~aGv~~viPHIYsSIIDk~TG~TrpedV~~ll~~~K~l~  271 (275)
T 3m6y_A          233 EANVEQVIPHVYSSIIDKETGNTKVEAVRELLAVVKKLV  271 (275)
T ss_dssp             HTTCSCBCCEECGGGBCTTTCCBCHHHHHHHHHHHHHHH
T ss_pred             HcCCCeecccccceeccCCCCCCCHHHHHHHHHHHHHHH
Confidence            9998754       2335679999999999999998754

>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*

Probab=85.99  E-value=18  Score=34.31  Aligned_cols=14  Identities=14%  Similarity=0.287  Sum_probs=8.2

Q ss_pred             CCCccHHHHHHHHH
Q 015894          338 SGNVATEDVVYMLN  351 (398)
Q Consensus       338 aGNa~lE~vv~~L~  351 (398)
                      .+|..-+.++...+
T Consensus       217 ~an~~P~~~~~l~~  230 (301)
T 1xky_A          217 ASHVIGNEMQEMIA  230 (301)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHH
Confidence            45666666665544

>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*

Probab=85.97  E-value=3.8  Score=40.08  Aligned_cols=82  Identities=11%  Similarity=0.021  Sum_probs=68.8

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcCc---CCHHHHHHHHHHHHhhCC-CCeEEEE-eCCccchHHHHHHHHHHhC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGV---GTPGTVIPMLEAVLDAVP-VDKLAVH-FHDTYGQALSNILASLQMG  317 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p-~~~l~~H-~Hnd~GlA~ANalaAl~aG  317 (398)
                      +..|.+.+.++++.+.+.|++.|.++-|+|=   +++++-.++++.+.+... .++|-++ ++|+..-++..+..|-++|
T Consensus        47 g~ID~~~l~~lv~~li~~Gv~Gl~v~GtTGE~~~Ls~eEr~~vi~~~ve~~~grvpViaGvg~~st~eai~la~~A~~~G  126 (343)
T 2v9d_A           47 GQLDKPGTAALIDDLIKAGVDGLFFLGSGGEFSQLGAEERKAIARFAIDHVDRRVPVLIGTGGTNARETIELSQHAQQAG  126 (343)
T ss_dssp             SSBCHHHHHHHHHHHHHTTCSCEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCSSCHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEeCccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcC
Confidence            5789999999999999999999999999996   778888888888887653 4566665 4578888999999999999


Q ss_pred             CCEEeec
Q 015894          318 ISTVDSS  324 (398)
Q Consensus       318 a~~VD~S  324 (398)
                      |+.|=+.
T Consensus       127 adavlv~  133 (343)
T 2v9d_A          127 ADGIVVI  133 (343)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEC
Confidence            9977554

>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}

Probab=85.89  E-value=4.5  Score=38.72  Aligned_cols=82  Identities=21%  Similarity=0.173  Sum_probs=68.2

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcC---cCCHHHHHHHHHHHHhhCC-CCeEEEE-eCCccchHHHHHHHHHHhC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIG---VGTPGTVIPMLEAVLDAVP-VDKLAVH-FHDTYGQALSNILASLQMG  317 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~lv~~l~~~~p-~~~l~~H-~Hnd~GlA~ANalaAl~aG  317 (398)
                      +..|.+.+.++++.+.+.|++.|.++-|.|   .+++++-.++++.+.+... .+|+-++ ++|+..-++..+..|-++|
T Consensus        32 g~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~st~~ai~la~~A~~~G  111 (304)
T 3cpr_A           32 GDIDIAAGREVAAYLVDKGLDSLVLAGTTGESPTTTAAEKLELLKAVREEVGDRAKLIAGVGTNNTRTSVELAEAAASAG  111 (304)
T ss_dssp             SCBCHHHHHHHHHHHHHTTCCEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEecCCCCCHHHHHHHHHHHHhcC
Confidence            578999999999999999999999999988   5677888888888887653 3566554 5678889999999999999


Q ss_pred             CCEEeec
Q 015894          318 ISTVDSS  324 (398)
Q Consensus       318 a~~VD~S  324 (398)
                      |+.+=+.
T Consensus       112 adavlv~  118 (304)
T 3cpr_A          112 ADGLLVV  118 (304)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEC
Confidence            9977554

>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A

Probab=85.88  E-value=12  Score=35.69  Aligned_cols=14  Identities=14%  Similarity=0.230  Sum_probs=9.0

Q ss_pred             CCCccHHHHHHHHH
Q 015894          338 SGNVATEDVVYMLN  351 (398)
Q Consensus       338 aGNa~lE~vv~~L~  351 (398)
                      .+|..-+.++...+
T Consensus       218 ~~n~~P~~~~~l~~  231 (304)
T 3l21_A          218 IAHLAAGQLRELLS  231 (304)
T ss_dssp             THHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHH
Confidence            55776677666554

>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae}

Probab=85.87  E-value=16  Score=35.10  Aligned_cols=15  Identities=27%  Similarity=0.202  Sum_probs=9.5

Q ss_pred             CCCccHHHHHHHHHh
Q 015894          338 SGNVATEDVVYMLNG  352 (398)
Q Consensus       338 aGNa~lE~vv~~L~~  352 (398)
                      ++|..-+.++...+.
T Consensus       228 ~an~~P~~~~~l~~a  242 (315)
T 3si9_A          228 SSNVAPKLCAQLHAA  242 (315)
T ss_dssp             GGGTCHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHH
Confidence            567766766666553

>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A

Probab=85.78  E-value=3.9  Score=37.21  Aligned_cols=172  Identities=13%  Similarity=0.110  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe--CCHhhHHHHHHcCCCEEEEeccCc
Q 015894          119 VVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT--PNLKGFEAAVAAGAKEVAIFASAS  196 (398)
Q Consensus       119 ~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~n~~~ie~a~~~Gv~~v~i~~~~S  196 (398)
                      .+-+++++.+.+.|++.|++.-..... .....+. +.++.++ ..++.+.+..  ++..+++.++++|++.|.+-..  
T Consensus        30 ~~~~~~a~~~~~~Gad~i~v~d~~~~~-~~~~~~~-~~i~~i~-~~~ipvi~~Ggi~~~~~~~~~~~~Gad~V~lg~~--  104 (241)
T 1qo2_A           30 KDPVELVEKLIEEGFTLIHVVDLSNAI-ENSGENL-PVLEKLS-EFAEHIQIGGGIRSLDYAEKLRKLGYRRQIVSSK--  104 (241)
T ss_dssp             SCHHHHHHHHHHTTCCCEEEEEHHHHH-HCCCTTH-HHHHHGG-GGGGGEEEESSCCSHHHHHHHHHTTCCEEEECHH--
T ss_pred             cCHHHHHHHHHHcCCCEEEEecccccc-cCCchhH-HHHHHHH-hcCCcEEEECCCCCHHHHHHHHHCCCCEEEECch--
Confidence            345789999999999999985221100 0001222 3344444 2344554443  5778899999999999877322  


Q ss_pred             hHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeec-CCCCCC--CCHHHHHHHHHHHHhCCCCEEEEccCc--
Q 015894          197 ESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVG-CPVEGM--VPPSKVAYVSKQLYDMGCSEISLGDTI--  271 (398)
Q Consensus       197 d~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg-~~~~~r--~~~~~l~~~a~~l~~~Gad~I~L~DT~--  271 (398)
                                    .+++- +.++.+++.|-.+...+..-.| ....+.  .+.....++++.+.++|++.|.+-++.  
T Consensus       105 --------------~l~~p-~~~~~~~~~g~~i~~~~d~~~~~v~~~g~~~~~~~~~~e~~~~~~~~G~~~i~~t~~~~~  169 (241)
T 1qo2_A          105 --------------VLEDP-SFLKSLREIDVEPVFSLDTRGGRVAFKGWLAEEEIDPVSLLKRLKEYGLEEIVHTEIEKD  169 (241)
T ss_dssp             --------------HHHCT-THHHHHHTTTCEEEEEEEEETTEECCTTCSSCSCCCHHHHHHHHHTTTCCEEEEEETTHH
T ss_pred             --------------HhhCh-HHHHHHHHcCCcEEEEEEecCCEEEECCceecCCCCHHHHHHHHHhCCCCEEEEEeeccc
Confidence                          11111 1122225556333322322000 000110  000123455677788999999987742  


Q ss_pred             CcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchH-HHHHHHHHHh
Q 015894          272 GVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQA-LSNILASLQM  316 (398)
Q Consensus       272 G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA-~ANalaAl~a  316 (398)
                      |...... .++++.+++..+ +|+-.=    -|.. ..++....++
T Consensus       170 g~~~g~~-~~~i~~l~~~~~-iPvia~----GGI~~~~d~~~~~~~  209 (241)
T 1qo2_A          170 GTLQEHD-FSLTKKIAIEAE-VKVLAA----GGISSENSLKTAQKV  209 (241)
T ss_dssp             HHTCCCC-HHHHHHHHHHHT-CEEEEE----SSCCSHHHHHHHHHH
T ss_pred             ccCCcCC-HHHHHHHHHhcC-CcEEEE----CCCCCHHHHHHHHhc
Confidence            3221111 455566665543 344332    3444 3566666666

>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*

Probab=85.76  E-value=4.2  Score=41.66  Aligned_cols=70  Identities=14%  Similarity=0.131  Sum_probs=51.8

Q ss_pred             HHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeecc
Q 015894          250 VAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSV  325 (398)
Q Consensus       250 l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv  325 (398)
                      ..+.++.+.++|++.|.|-=+.  ..|....++++.+++.+|+.++....=    .....+..+.++||+.|+++.
T Consensus       256 ~~~~a~~~~~aG~d~v~i~~~~--G~~~~~~~~i~~i~~~~~~~pvi~~~v----~t~~~a~~l~~aGad~I~vg~  325 (514)
T 1jcn_A          256 DKYRLDLLTQAGVDVIVLDSSQ--GNSVYQIAMVHYIKQKYPHLQVIGGNV----VTAAQAKNLIDAGVDGLRVGM  325 (514)
T ss_dssp             HHHHHHHHHHTTCSEEEECCSC--CCSHHHHHHHHHHHHHCTTCEEEEEEE----CSHHHHHHHHHHTCSEEEECS
T ss_pred             hHHHHHHHHHcCCCEEEeeccC--CcchhHHHHHHHHHHhCCCCceEeccc----chHHHHHHHHHcCCCEEEECC
Confidence            4566778889999999883333  356677899999999998777766311    224457788899999999954

>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}

Probab=85.66  E-value=15  Score=34.67  Aligned_cols=76  Identities=12%  Similarity=0.047  Sum_probs=37.0

Q ss_pred             HHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC-CCCEE--EEccCcCc-CCHHHHHHHHHHHHhhCCC
Q 015894          217 DVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM-GCSEI--SLGDTIGV-GTPGTVIPMLEAVLDAVPV  292 (398)
Q Consensus       217 ~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~-Gad~I--~L~DT~G~-~~P~~v~~lv~~l~~~~p~  292 (398)
                      +.++.|++.|.....-+     .|.-.+.+.+.+.+..+.+.+. +...+  .++...|. ++|+.+.++.+    ..|+
T Consensus        86 ~la~~a~~~Gadavlv~-----~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~La~----~~pn  156 (289)
T 2yxg_A           86 ELSVFAEDVGADAVLSI-----TPYYNKPTQEGLRKHFGKVAESINLPIVLYNVPSRTAVNLEPKTVKLLAE----EYSN  156 (289)
T ss_dssp             HHHHHHHHHTCSEEEEE-----CCCSSCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHHHH----HCTT
T ss_pred             HHHHHHHhcCCCEEEEC-----CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHHHHHHH----hCCC
Confidence            44566666776643111     3444445666666665555442 44332  34445554 45555555431    2465


Q ss_pred             CeEEE-EeCCc
Q 015894          293 DKLAV-HFHDT  302 (398)
Q Consensus       293 ~~l~~-H~Hnd  302 (398)
                      + +++ ....|
T Consensus       157 i-vgiK~s~gd  166 (289)
T 2yxg_A          157 I-SAVKEANPN  166 (289)
T ss_dssp             E-EEEEECCSC
T ss_pred             E-EEEEeCCCC
Confidence            3 555 33344

>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}

Probab=85.64  E-value=3.3  Score=39.38  Aligned_cols=82  Identities=15%  Similarity=0.033  Sum_probs=67.9

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcC---cCCHHHHHHHHHHHHhhCC-CCeEEEE-eCCccchHHHHHHHHHHhC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIG---VGTPGTVIPMLEAVLDAVP-VDKLAVH-FHDTYGQALSNILASLQMG  317 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~lv~~l~~~~p-~~~l~~H-~Hnd~GlA~ANalaAl~aG  317 (398)
                      +..|.+.+.++++.+.+.|++.|.++-|.|   .+++++-.++++.+.+... .+++-+| ++|+..-++..+..|-++|
T Consensus        16 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~G   95 (294)
T 2ehh_A           16 GEVDYEALGNLIEFHVDNGTDAILVCGTTGESPTLTFEEHEKVIEFAVKRAAGRIKVIAGTGGNATHEAVHLTAHAKEVG   95 (294)
T ss_dssp             TEECHHHHHHHHHHHHTTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCCCHHHHHHHHHHHHhcC
Confidence            567899999999999999999999999988   4677888888888887653 3566664 5678888999999999999


Q ss_pred             CCEEeec
Q 015894          318 ISTVDSS  324 (398)
Q Consensus       318 a~~VD~S  324 (398)
                      |+.+=+.
T Consensus        96 adavlv~  102 (294)
T 2ehh_A           96 ADGALVV  102 (294)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEC
Confidence            9977554

>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A

Probab=85.64  E-value=3.5  Score=39.11  Aligned_cols=81  Identities=20%  Similarity=0.137  Sum_probs=68.1

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcCc---CCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGV---GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGIS  319 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~  319 (398)
                      +..|.+.+.++++.+.+.|++.|.++-|.|=   +++++-.++++.+.+...+ -|.=-++|+..-++..+..|-++||+
T Consensus        15 g~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~v~~~~~~~~~g-ViaGvg~~~t~~ai~la~~A~~~Gad   93 (288)
T 2nuw_A           15 GKVNVDALKTHAKNLLEKGIDAIFVNGTTGLGPALSKDEKRQNLNALYDVTHK-LIFQVGSLNLNDVMELVKFSNEMDIL   93 (288)
T ss_dssp             SCBCHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHTTTCSC-EEEECCCSCHHHHHHHHHHHHTSCCS
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-eEEeeCCCCHHHHHHHHHHHHhcCCC
Confidence            5789999999999999999999999999996   6788888888888877765 23335677888899999999999999


Q ss_pred             EEeec
Q 015894          320 TVDSS  324 (398)
Q Consensus       320 ~VD~S  324 (398)
                      .+=+.
T Consensus        94 avlv~   98 (288)
T 2nuw_A           94 GVSSH   98 (288)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            77554

>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661}

Probab=85.60  E-value=3.5  Score=39.09  Aligned_cols=82  Identities=18%  Similarity=0.064  Sum_probs=67.9

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcCc---CCHHHHHHHHHHHHhhCC-CCeEEEE-eCCccchHHHHHHHHHHhC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGV---GTPGTVIPMLEAVLDAVP-VDKLAVH-FHDTYGQALSNILASLQMG  317 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p-~~~l~~H-~Hnd~GlA~ANalaAl~aG  317 (398)
                      +..|.+.+.++++.+.+.|++.|.++-|.|-   +++++-.++++.+.+... .+++-+| ++|+..-++..+..|-++|
T Consensus        16 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~G   95 (289)
T 2yxg_A           16 KEVDFDGLEENINFLIENGVSGIVAVGTTGESPTLSHEEHKKVIEKVVDVVNGRVQVIAGAGSNCTEEAIELSVFAEDVG   95 (289)
T ss_dssp             TEECHHHHHHHHHHHHHTTCSEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSSHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHhcC
Confidence            5678999999999999999999999999884   677888888888887653 3566554 5678888999999999999


Q ss_pred             CCEEeec
Q 015894          318 ISTVDSS  324 (398)
Q Consensus       318 a~~VD~S  324 (398)
                      |+.+=+.
T Consensus        96 adavlv~  102 (289)
T 2yxg_A           96 ADAVLSI  102 (289)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEC
Confidence            9977554

>4gj1_A 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino) methylideneamino] imidazole-4-carboxamide...; HISA, csgid, niaid,; 2.15A {Campylobacter jejuni subsp}

Probab=85.56  E-value=9.2  Score=35.25  Aligned_cols=197  Identities=14%  Similarity=0.053  Sum_probs=103.9

Q ss_pred             HHHHHHHHHHhcCCCEEEEe---cCCCCCcccCCCCHHHHHHHHHhccCCcEEE--EeCCHhhHHHHHHcCCCEEEEecc
Q 015894          120 VKVELIKLLVSSGLAVVEAT---SFVSPKWVPQLADAKDVMAAIQNVEGARFPV--LTPNLKGFEAAVAAGAKEVAIFAS  194 (398)
Q Consensus       120 ~k~~ia~~L~~aGv~~IEvG---~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~n~~~ie~a~~~Gv~~v~i~~~  194 (398)
                      +-+++++.+.+.|++.+=+-   .....+  +  ... ++++.+.+.....+++  =.|+.++++..+++|++.|-+-..
T Consensus        32 dP~~~a~~~~~~gad~lhvvDld~a~~~~--~--~~~-~~i~~i~~~~~~pl~vGGGIrs~e~~~~~l~~GadkVii~t~  106 (243)
T 4gj1_A           32 NPLKKFKEYEKAGAKELHLVDLTGAKDPS--K--RQF-ALIEKLAKEVSVNLQVGGGIRSKEEVKALLDCGVKRVVIGSM  106 (243)
T ss_dssp             CHHHHHHHHHHHTCCEEEEEEHHHHHCGG--G--CCH-HHHHHHHHHCCSEEEEESSCCCHHHHHHHHHTTCSEEEECTT
T ss_pred             CHHHHHHHHHHCCCCEEEEEecCcccccc--h--hHH-HHHHHHHHhcCCCeEeccccccHHHHHHHHHcCCCEEEEccc
Confidence            34678899999998866552   110100  1  123 3444443333444443  348999999999999999887432


Q ss_pred             CchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecC-----CCCC-CCCHHHHHHHHHHHHhCCCCEEEE
Q 015894          195 ASESFSKSNINCTIEDSLIRYRDVALAARELSIP-VRGYLSCVVGC-----PVEG-MVPPSKVAYVSKQLYDMGCSEISL  267 (398)
Q Consensus       195 ~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~-v~~~l~~~fg~-----~~~~-r~~~~~l~~~a~~l~~~Gad~I~L  267 (398)
                      +-.         + .   +.+   -+.+++.|-. +.+.+-.....     -..+ ..+.-.+.+.++.+.+.|+.+|-+
T Consensus       107 a~~---------~-p---~li---~e~~~~~g~q~iv~~iD~~~~~~~~v~~~gw~~~~~~~~~~~~~~~~~~g~~eil~  170 (243)
T 4gj1_A          107 AIK---------D-A---TLC---LEILKEFGSEAIVLALDTILKEDYVVAVNAWQEASDKKLMEVLDFYSNKGLKHILC  170 (243)
T ss_dssp             TTT---------C-H---HHH---HHHHHHHCTTTEEEEEEEEESSSEEEC--------CCBHHHHHHHHHTTTCCEEEE
T ss_pred             ccc---------C-C---chH---HHHHhcccCceEEEEEEEEeCCCCEEEecCceecccchHHHHHHHHhhcCCcEEEe
Confidence            210         0 1   112   2334455532 22222211000     0000 111123456778888999998777


Q ss_pred             --ccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHH
Q 015894          268 --GDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATED  345 (398)
Q Consensus       268 --~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~  345 (398)
                        .|.-|.+.-..+ ++++.+.+.+|.+|+-..+    |.+...=+..++.++   ++.+.|-.=      -.|..++++
T Consensus       171 t~Id~DGt~~G~d~-~l~~~l~~~~~~ipviasG----Gv~~~~Dl~~l~~~~---~gvivg~Al------~~g~i~l~e  236 (243)
T 4gj1_A          171 TDISKDGTMQGVNV-RLYKLIHEIFPNICIQASG----GVASLKDLENLKGIC---SGVIVGKAL------LDGVFSVEE  236 (243)
T ss_dssp             EETTC-----CCCH-HHHHHHHHHCTTSEEEEES----CCCSHHHHHHTTTTC---SEEEECHHH------HTTSSCHHH
T ss_pred             eeecccccccCCCH-HHHHHHHHhcCCCCEEEEc----CCCCHHHHHHHHccC---chhehHHHH------HCCCCCHHH
Confidence              467888887776 4678888888877877654    333233344455553   334433222      357788888


Q ss_pred             HHHHHH
Q 015894          346 VVYMLN  351 (398)
Q Consensus       346 vv~~L~  351 (398)
                      ++..|.
T Consensus       237 a~~~l~  242 (243)
T 4gj1_A          237 GIRCLA  242 (243)
T ss_dssp             HHHHHC
T ss_pred             HHHHhh
Confidence            776653

>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A

Probab=85.54  E-value=4.2  Score=38.52  Aligned_cols=81  Identities=16%  Similarity=0.115  Sum_probs=68.6

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcCc---CCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGV---GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGIS  319 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~  319 (398)
                      +..|.+.+.++++.+.+.|++.|.++-|.|=   +++++-.++++.+.+...+ -+.=-++|+..-++..+..|-++||+
T Consensus        14 g~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~g-vi~Gvg~~~t~~ai~la~~A~~~Gad   92 (286)
T 2r91_A           14 GRLDPELFANHVKNITSKGVDVVFVAGTTGLGPALSLQEKMELTDAATSAARR-VIVQVASLNADEAIALAKYAESRGAE   92 (286)
T ss_dssp             TEECHHHHHHHHHHHHHTTCCEEEETSTTTTGGGSCHHHHHHHHHHHHHHCSS-EEEECCCSSHHHHHHHHHHHHHTTCS
T ss_pred             CccCHHHHHHHHHHHHHCCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCC-EEEeeCCCCHHHHHHHHHHHHhcCCC
Confidence            5678899999999999999999999999986   7788888999999988766 23335677888999999999999999


Q ss_pred             EEeec
Q 015894          320 TVDSS  324 (398)
Q Consensus       320 ~VD~S  324 (398)
                      .+=+.
T Consensus        93 avlv~   97 (286)
T 2r91_A           93 AVASL   97 (286)
T ss_dssp             EEEEC
T ss_pred             EEEEc
Confidence            77554

>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*

Probab=85.42  E-value=4  Score=38.73  Aligned_cols=81  Identities=14%  Similarity=0.044  Sum_probs=66.9

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcC---cCCHHHHHHHHHHHHhhCC-CCeEEEE-eCCccchHHHHHHHHHHhC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIG---VGTPGTVIPMLEAVLDAVP-VDKLAVH-FHDTYGQALSNILASLQMG  317 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~lv~~l~~~~p-~~~l~~H-~Hnd~GlA~ANalaAl~aG  317 (398)
                      + .|.+.+.++++.+.+.|++.|.++-|.|   .+++++-.++++.+.+... .+++-+| ++|+..-++..+..|-++|
T Consensus        18 g-iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pvi~Gvg~~~t~~ai~la~~a~~~G   96 (291)
T 3a5f_A           18 G-VDFDKLSELIEWHIKSKTDAIIVCGTTGEATTMTETERKETIKFVIDKVNKRIPVIAGTGSNNTAASIAMSKWAESIG   96 (291)
T ss_dssp             S-BCHHHHHHHHHHHHHTTCCEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHHHHTT
T ss_pred             C-cCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEeCCcccHHHHHHHHHHHHhcC
Confidence            5 8999999999999999999999999988   5677888888888887653 3555554 5678888999999999999


Q ss_pred             CCEEeec
Q 015894          318 ISTVDSS  324 (398)
Q Consensus       318 a~~VD~S  324 (398)
                      |+.+=..
T Consensus        97 adavlv~  103 (291)
T 3a5f_A           97 VDGLLVI  103 (291)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEc
Confidence            9977554

>3civ_A Endo-beta-1,4-mannanase; TIM barrel, hydrolase; 1.90A {Alicyclobacillus acidocaldarius}

Probab=85.32  E-value=8.6  Score=37.46  Aligned_cols=121  Identities=12%  Similarity=-0.033  Sum_probs=69.5

Q ss_pred             hHHHHHHcCCCEEEEeccCch--HHHhh---hcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeec-CCCCCC---C--
Q 015894          177 GFEAAVAAGAKEVAIFASASE--SFSKS---NINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVG-CPVEGM---V--  245 (398)
Q Consensus       177 ~ie~a~~~Gv~~v~i~~~~Sd--~~~~~---~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg-~~~~~r---~--  245 (398)
                      .++.+.+.|+..|+|.+....  .+...   +.+.|  ...+.++.+++.|+++|+.|....-.... .++.++   .  
T Consensus        58 ~l~~lk~~g~N~VrL~v~~~~~~~~~~~~~~~~~~t--~~~~~v~~~~~~Ak~~GL~V~l~p~i~~~~g~w~g~i~~~~~  135 (343)
T 3civ_A           58 SMRALAEQPFNWVTLAFAGLMEHPGDPAIAYGPPVT--VSDDEIASMAELAHALGLKVCLKPTVNCRDGTWRGEIRFEKE  135 (343)
T ss_dssp             HHHHHHHSSCSEEEEEEEEEESSTTCCCCBCSTTTB--CCHHHHHHHHHHHHHTTCEEEEEEEEEETTCCCGGGCCCSBS
T ss_pred             HHHHHHHcCCCEEEEEeeecCCCCCCCcccccCCCC--CCHHHHHHHHHHHHHCCCEEEEEEEeeccCCcccccccccCc
Confidence            455666788888777533211  11100   11111  13466778899999999998643322210 011111   0  


Q ss_pred             ----CH----------HHHHHHHHHHHhCCCCEEEEccCcC--cCCHHHHHHHHHHHHhhCCCCeEEEEeC
Q 015894          246 ----PP----------SKVAYVSKQLYDMGCSEISLGDTIG--VGTPGTVIPMLEAVLDAVPVDKLAVHFH  300 (398)
Q Consensus       246 ----~~----------~~l~~~a~~l~~~Gad~I~L~DT~G--~~~P~~v~~lv~~l~~~~p~~~l~~H~H  300 (398)
                          ++          .+++.+++.....+++.++|.-=.-  .-.+....++++.+|+.+|. +|.++..
T Consensus       136 ~~~~~~~w~~~f~~y~~~i~~~a~~a~~~~V~~~~IGNE~~~~~~~~~~~~~Li~~vR~~~~g-~VTya~~  205 (343)
T 3civ_A          136 HGPDLESWEAWFGSYSDMMAHYAHVAKRTGCEMFCVGCEMTTAEPHEAMWRETIARVRTEYDG-LVTYNCN  205 (343)
T ss_dssp             CCTTSSBHHHHHHHHHHHHHHHHHHHHHTTCSEEEEEESCTTTTTCHHHHHHHHHHHHHHCCS-EEEEEEE
T ss_pred             CCcchHHHHHHHHHHHHHHHHHHHHccCCCceEEEECCCCCCCCchHHHHHHHHHHHHhhCCC-CEEEEec
Confidence                11          2344445445567899988864111  12678899999999999987 8888753

>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*

Probab=85.28  E-value=4.4  Score=38.47  Aligned_cols=82  Identities=11%  Similarity=0.105  Sum_probs=68.7

Q ss_pred             CCCCHHHHHHHHHHHHh-CCCCEEEEccCcCc---CCHHHHHHHHHHHHhhCC-CCeEEEE-eCCccchHHHHHHHHHHh
Q 015894          243 GMVPPSKVAYVSKQLYD-MGCSEISLGDTIGV---GTPGTVIPMLEAVLDAVP-VDKLAVH-FHDTYGQALSNILASLQM  316 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~-~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p-~~~l~~H-~Hnd~GlA~ANalaAl~a  316 (398)
                      +..|.+.+.++++.+.+ .|++.|.++-|.|-   +++++-.++++.+.+... .+++-+| ++|+..-++..+..|-++
T Consensus        19 g~iD~~~l~~lv~~li~~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~   98 (293)
T 1f6k_A           19 GTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATEL   98 (293)
T ss_dssp             SCBCHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHhhCCCcEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHhc
Confidence            57899999999999999 99999999999986   778888888888887653 4566554 567888899999999999


Q ss_pred             CCCEEeec
Q 015894          317 GISTVDSS  324 (398)
Q Consensus       317 Ga~~VD~S  324 (398)
                      ||+.+=+.
T Consensus        99 Gadavlv~  106 (293)
T 1f6k_A           99 GYDCLSAV  106 (293)
T ss_dssp             TCSEEEEE
T ss_pred             CCCEEEEC
Confidence            99977554

>1tx2_A DHPS, dihydropteroate synthase; folate biosynthesis, pterine, MA transferase; HET: 680; 1.83A {Bacillus anthracis} SCOP: c.1.21.1 PDB: 1tww_A* 1twz_A* 1tx0_A* 1tws_A* 3h21_A* 3h22_A* 3h23_A* 3h24_A* 3h26_A* 3h2a_A* 3h2c_A* 3h2e_A* 3h2f_A* 3h2m_A* 3h2n_A* 3h2o_A* 3tya_A* 3tyb_A* 3tyc_A* 3tyd_A* ...

Probab=85.15  E-value=4.9  Score=38.63  Aligned_cols=72  Identities=15%  Similarity=0.208  Sum_probs=50.5

Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEcc--C----cCcCCHHHHHHHH---HHHHhhCCCCeEEEEeCCccchHHHHHHHHHHh
Q 015894          246 PPSKVAYVSKQLYDMGCSEISLGD--T----IGVGTPGTVIPML---EAVLDAVPVDKLAVHFHDTYGQALSNILASLQM  316 (398)
Q Consensus       246 ~~~~l~~~a~~l~~~Gad~I~L~D--T----~G~~~P~~v~~lv---~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~a  316 (398)
                      +++...+.++++.+.|||.|-|.=  |    ..+...+++.+++   +.+++.+ +++|.+.+.+     ..-+.+|+++
T Consensus        61 ~~~~a~~~a~~~v~~GAdiIDIGgeStrPga~~v~~~eE~~RvvpvI~~l~~~~-~vpiSIDT~~-----~~V~~aAl~a  134 (297)
T 1tx2_A           61 EVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAKVSVEEEIKRVVPMIQAVSKEV-KLPISIDTYK-----AEVAKQAIEA  134 (297)
T ss_dssp             HHHHHHHHHHHHHHTTCSEEEEESCC----CCCCCHHHHHHHHHHHHHHHHHHS-CSCEEEECSC-----HHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCCEEEECCCcCCCCCCCCCHHHHHHHHHHHHHHHHhcC-CceEEEeCCC-----HHHHHHHHHc
Confidence            567888889999999999988873  2    1222245555444   7777665 5679998764     3556788889


Q ss_pred             CCCEEee
Q 015894          317 GISTVDS  323 (398)
Q Consensus       317 Ga~~VD~  323 (398)
                      |+++|+-
T Consensus       135 Ga~iINd  141 (297)
T 1tx2_A          135 GAHIIND  141 (297)
T ss_dssp             TCCEEEE
T ss_pred             CCCEEEE
Confidence            9999954

>3l5l_A Xenobiotic reductase A; TIM barrel, oxidoreductase; HET: BU3 FMN; 1.03A {Pseudomonas putida} SCOP: c.1.4.0 PDB: 3l5m_A* 3n19_B* 3n16_A* 3l68_A* 3l67_A* 3l65_A* 3l66_A* 3n14_A* 2h8z_A* 2h90_A* 2h8x_A*

Probab=85.12  E-value=8.5  Score=37.66  Aligned_cols=124  Identities=15%  Similarity=0.066  Sum_probs=76.6

Q ss_pred             CCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeec--C-----------------------CCC-----C------CCCHH
Q 015894          205 NCTIEDSLIRYRDVALAARELSIPVRGYLSCVVG--C-----------------------PVE-----G------MVPPS  248 (398)
Q Consensus       205 ~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg--~-----------------------~~~-----~------r~~~~  248 (398)
                      +...++.++..+++++.++++|-.+.+.|...--  .                       |-.     +      ..+.+
T Consensus        72 ~i~~d~~i~~~~~~~~~vh~~G~~i~~QL~H~Gr~~~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~~p~~mt~~  151 (363)
T 3l5l_A           72 GIWSDAHAQAFVPVVQAIKAAGSVPGIQIAHAGRKASANRPWEGDDHIAADDTRGWETIAPSAIAFGAHLPKVPREMTLD  151 (363)
T ss_dssp             BCSSHHHHHHHHHHHHHHHHTTCEEEEEEECCGGGCSBCCGGGTSSBCCTTCTTCCCCEESSSCCCBTTBCCCCEECCHH
T ss_pred             eecCHHHHHHHHHHHHHHHhcCCEEEEEeccCCccccccccccccccccccccCCCcccCCCCCccCCCCCCCCccCCHH
Confidence            3344567888889999999999888777765310  0                       000     0      02223


Q ss_pred             -------HHHHHHHHHHhCCCCEEEEc-------------------cCcCcCC---HHHHHHHHHHHHhhCC-CCeEEEE
Q 015894          249 -------KVAYVSKQLYDMGCSEISLG-------------------DTIGVGT---PGTVIPMLEAVLDAVP-VDKLAVH  298 (398)
Q Consensus       249 -------~l~~~a~~l~~~Gad~I~L~-------------------DT~G~~~---P~~v~~lv~~l~~~~p-~~~l~~H  298 (398)
                             .+.+.++.+.++|.|.|-|-                   |-.|...   +.-+.++|+++|+.++ +.+|++-
T Consensus       152 eI~~ii~~f~~aA~~a~~aGfDgVEih~a~GyLl~qFlsp~~N~R~D~yGGslenR~r~~~eiv~aVr~avg~d~pV~vR  231 (363)
T 3l5l_A          152 DIARVKQDFVDAARRARDAGFEWIELHFAHGYLGQSFFSEHSNKRTDAYGGSFDNRSRFLLETLAAVREVWPENLPLTAR  231 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHTTSCTTSCEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCEEEEccccchHHHHccCCCcCCCCcccCcCHHHHHHHHHHHHHHHHHHcCCCceEEEE
Confidence                   44455667778899987764                   4444322   2346789999999885 5567775


Q ss_pred             eCCc----cc-h----HHHHHHHHHHhCCCEEeeccccC
Q 015894          299 FHDT----YG-Q----ALSNILASLQMGISTVDSSVSGL  328 (398)
Q Consensus       299 ~Hnd----~G-l----A~ANalaAl~aGa~~VD~Sv~Gl  328 (398)
                      ..-+    -| .    ++.-+...-++|++.|+++..+.
T Consensus       232 is~~~~~~~G~~~~~~~~~la~~L~~~Gvd~i~vs~g~~  270 (363)
T 3l5l_A          232 FGVLEYDGRDEQTLEESIELARRFKAGGLDLLSVSVGFT  270 (363)
T ss_dssp             EEEECSSSCHHHHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred             ecchhcCCCCCCCHHHHHHHHHHHHHcCCCEEEEecCcc
Confidence            5421    13 2    23333344578999999987554

>3lmz_A Putative sugar isomerase; structural genomics, joint center structural genomics, JCSG, protein structure initiative, PS isomerase; HET: MSE CIT PGE; 1.44A {Parabacteroides distasonis}

Probab=85.10  E-value=18  Score=32.56  Aligned_cols=102  Identities=10%  Similarity=-0.041  Sum_probs=66.7

Q ss_pred             hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 015894          176 KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSK  255 (398)
Q Consensus       176 ~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~  255 (398)
                      +-++.+.++|.+.|-++..    +.  ....+.    +.+.++.+.+++.|+.+.. +....  .    ...+.+.+.++
T Consensus        34 ~~l~~~~~~G~~~vEl~~~----~~--~~~~~~----~~~~~~~~~l~~~gl~i~~-~~~~~--~----~~~~~~~~~i~   96 (257)
T 3lmz_A           34 TTLKTLERLDIHYLCIKDF----HL--PLNSTD----EQIRAFHDKCAAHKVTGYA-VGPIY--M----KSEEEIDRAFD   96 (257)
T ss_dssp             HHHHHHHHTTCCEEEECTT----TS--CTTCCH----HHHHHHHHHHHHTTCEEEE-EEEEE--E----CSHHHHHHHHH
T ss_pred             HHHHHHHHhCCCEEEEecc----cC--CCCCCH----HHHHHHHHHHHHcCCeEEE-Eeccc--c----CCHHHHHHHHH
Confidence            3467888999999998754    10  112232    2345566777899998763 22211  1    36788999999


Q ss_pred             HHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCC
Q 015894          256 QLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHD  301 (398)
Q Consensus       256 ~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hn  301 (398)
                      .+.++|++.|.+.  .|   ...+.++.....+ . ++.|.+|.|+
T Consensus        97 ~A~~lGa~~v~~~--p~---~~~l~~l~~~a~~-~-gv~l~lEn~~  135 (257)
T 3lmz_A           97 YAKRVGVKLIVGV--PN---YELLPYVDKKVKE-Y-DFHYAIHLHG  135 (257)
T ss_dssp             HHHHHTCSEEEEE--EC---GGGHHHHHHHHHH-H-TCEEEEECCC
T ss_pred             HHHHhCCCEEEec--CC---HHHHHHHHHHHHH-c-CCEEEEecCC
Confidence            9999999998873  12   3555555555543 3 3679999996

>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str}

Probab=84.96  E-value=14  Score=35.72  Aligned_cols=75  Identities=7%  Similarity=-0.137  Sum_probs=37.2

Q ss_pred             HHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC-CCCEE--EEccCcCc-CCHHHHHHHHHHHHhhCCC
Q 015894          217 DVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM-GCSEI--SLGDTIGV-GTPGTVIPMLEAVLDAVPV  292 (398)
Q Consensus       217 ~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~-Gad~I--~L~DT~G~-~~P~~v~~lv~~l~~~~p~  292 (398)
                      +.++.|++.|.....     ...|.-.+.+.+.+.+..+.+.+. +...+  .++...|. +.|+.+.++.    + .|+
T Consensus       120 ~la~~A~~~Gadavl-----v~~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~~e~~~~La----~-~pn  189 (332)
T 2r8w_A          120 ALAKDAEAAGADALL-----LAPVSYTPLTQEEAYHHFAAVAGATALPLAIYNNPTTTRFTFSDELLVRLA----Y-IPN  189 (332)
T ss_dssp             HHHHHHHHHTCSEEE-----ECCCCSSCCCHHHHHHHHHHHHHHCSSCEEEECCHHHHCCCCCHHHHHHHH----T-STT
T ss_pred             HHHHHHHhcCCCEEE-----ECCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCcCCCHHHHHHHH----c-CCC
Confidence            445666667766431     113444455666666666555443 44432  23444554 4555555543    2 465


Q ss_pred             CeEEE-EeCCc
Q 015894          293 DKLAV-HFHDT  302 (398)
Q Consensus       293 ~~l~~-H~Hnd  302 (398)
                      + +++ ....|
T Consensus       190 I-vgiKdssgd  199 (332)
T 2r8w_A          190 I-RAIKMPLPA  199 (332)
T ss_dssp             E-EEEEECCCT
T ss_pred             E-EEEEeCCCC
Confidence            3 555 44444

>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A*

Probab=84.92  E-value=3.7  Score=39.02  Aligned_cols=81  Identities=17%  Similarity=0.141  Sum_probs=68.3

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcCc---CCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGV---GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGIS  319 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~  319 (398)
                      +..|.+.+.++++.+.+.|++.|.++-|.|=   +++++-.++++.+++...+ -|.=-++|+..-++..+..|-++||+
T Consensus        15 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~eEr~~v~~~~~~~~~g-viaGvg~~~t~~ai~la~~A~~~Gad   93 (293)
T 1w3i_A           15 NRIDKEKLKIHAENLIRKGIDKLFVNGTTGLGPSLSPEEKLENLKAVYDVTNK-IIFQVGGLNLDDAIRLAKLSKDFDIV   93 (293)
T ss_dssp             SSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHTTCSC-EEEECCCSCHHHHHHHHHHGGGSCCS
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHcCC-EEEecCCCCHHHHHHHHHHHHhcCCC
Confidence            5789999999999999999999999999986   7788888899998887765 23335677888899999999999999


Q ss_pred             EEeec
Q 015894          320 TVDSS  324 (398)
Q Consensus       320 ~VD~S  324 (398)
                      .+=+.
T Consensus        94 avlv~   98 (293)
T 1w3i_A           94 GIASY   98 (293)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            77554

>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A*

Probab=84.81  E-value=2.7  Score=40.06  Aligned_cols=32  Identities=6%  Similarity=0.077  Sum_probs=14.8

Q ss_pred             cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcE
Q 015894          194 SASESFSKSNINCTIEDSLIRYRDVALAARELSIPV  229 (398)
Q Consensus       194 ~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v  229 (398)
                      ..-|-+...+...+.++.+    ++++...+.|+..
T Consensus        12 tlRDG~Q~~~~~~~~e~k~----~i~~~L~~~Gv~~   43 (298)
T 2cw6_A           12 GPRDGLQNEKNIVSTPVKI----KLIDMLSEAGLSV   43 (298)
T ss_dssp             TTTHHHHTCSSCCCHHHHH----HHHHHHHHTTCSE
T ss_pred             CCCcccCCCCCCCCHHHHH----HHHHHHHHcCcCE
Confidence            3444443334445555444    3334444556643

>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A

Probab=84.74  E-value=17  Score=34.09  Aligned_cols=136  Identities=18%  Similarity=0.150  Sum_probs=82.3

Q ss_pred             EEEEeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHH-hCCCcEEEEEeeeecCCCC--CC
Q 015894          168 FPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAR-ELSIPVRGYLSCVVGCPVE--GM  244 (398)
Q Consensus       168 l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak-~~G~~v~~~l~~~fg~~~~--~r  244 (398)
                      +-+.+-+..+...|.+.|+++|-+....+.      =|.|+.-.+      ++.++ ...++|.+-|=     |-.  .-
T Consensus         4 lEvc~~s~~~a~~A~~~GAdRIELc~~L~~------GGlTPS~g~------i~~~~~~~~ipv~vMIR-----PR~GdF~   66 (256)
T 1twd_A            4 LEICCYSMECALTAQQNGADRVELCAAPKE------GGLTPSLGV------LKSVRQRVTIPVHPIIR-----PRGGDFC   66 (256)
T ss_dssp             EEEEESSHHHHHHHHHTTCSEEEECBCGGG------TCBCCCHHH------HHHHHHHCCSCEEEBCC-----SSSSCSC
T ss_pred             EEEEeCCHHHHHHHHHcCCCEEEEcCCccc------CCCCCCHHH------HHHHHHHcCCceEEEEC-----CCCCCCc
Confidence            345667889999999999999999865432      133433221      22223 34677763221     322  24


Q ss_pred             CCHHHHHH---HHHHHHhCCCCEEEEc--cCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchH-HHHHHHHHHhCC
Q 015894          245 VPPSKVAY---VSKQLYDMGCSEISLG--DTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQA-LSNILASLQMGI  318 (398)
Q Consensus       245 ~~~~~l~~---~a~~l~~~Gad~I~L~--DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA-~ANalaAl~aGa  318 (398)
                      |+.+++..   -++.+.++|++.|.+.  +.-|...-..+.++++...    +.++.||-=-|.=-- ....-..++.|+
T Consensus        67 Ys~~E~~~M~~Di~~~~~~GadGvV~G~Lt~dg~iD~~~~~~Li~~a~----~~~vTFHRAfD~~~d~~~ale~L~~lG~  142 (256)
T 1twd_A           67 YSDGEFAAILEDVRTVRELGFPGLVTGVLDVDGNVDMPRMEKIMAAAG----PLAVTFHRAFDMCANPLYTLNNLAELGI  142 (256)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCSEEEECCBCTTSSBCHHHHHHHHHHHT----TSEEEECGGGGGCSCHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHHhC----CCcEEEECchhccCCHHHHHHHHHHcCC
Confidence            66655554   4567788999987653  5566666677888876543    356777755443211 122233346799


Q ss_pred             CEEeec
Q 015894          319 STVDSS  324 (398)
Q Consensus       319 ~~VD~S  324 (398)
                      ++|=||
T Consensus       143 ~rILTS  148 (256)
T 1twd_A          143 ARVLTS  148 (256)
T ss_dssp             CEEEEC
T ss_pred             CEEECC
Confidence            999866

>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}

Probab=84.72  E-value=16  Score=33.61  Aligned_cols=166  Identities=14%  Similarity=0.137  Sum_probs=0.0

Q ss_pred             hcCCCEEEEecCCCCCcccCCCCHHHHHHHHH---hccCCcEEEEeCC---------------HhhHHHHHHcCCCEEEE
Q 015894          130 SSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ---NVEGARFPVLTPN---------------LKGFEAAVAAGAKEVAI  191 (398)
Q Consensus       130 ~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~---~~~~~~l~~l~~n---------------~~~ie~a~~~Gv~~v~i  191 (398)
                      +.|.+.||+=.-......   .-.-.+++.++   +..++.+.+|.|.               ..|++.+.+.|++.|-+
T Consensus        19 ~~GAdRIELc~~L~~GGl---TPS~g~i~~~~~~~~~~~ipV~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~GadGvV~   95 (224)
T 2bdq_A           19 KAIISRVELCDNLAVGGT---TPSYGVIKEANQYLHEKGISVAVMIRPRGGNFVYNDLELRIMEEDILRAVELESDALVL   95 (224)
T ss_dssp             TTTCCEEEEEBCGGGTCB---CCCHHHHHHHHHHHHHTTCEEEEECCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSEEEE
T ss_pred             HcCCCEEEEcCCcccCCc---CCCHHHHHHHHHhhhhcCCceEEEECCCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEE


Q ss_pred             eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCc
Q 015894          192 FASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTI  271 (398)
Q Consensus       192 ~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~  271 (398)
                      -+=..|-.+..          +.++++++.|+  |+.++  +-.+|     .........+..+.+.++|+++|-   |.
T Consensus        96 G~Lt~dg~iD~----------~~~~~Li~~a~--~~~vT--FHRAF-----D~~~~~d~~~ale~L~~lGv~rIL---TS  153 (224)
T 2bdq_A           96 GILTSNNHIDT----------EAIEQLLPATQ--GLPLV--FHMAF-----DVIPKSDQKKSIDQLVALGFTRIL---LH  153 (224)
T ss_dssp             CCBCTTSSBCH----------HHHHHHHHHHT--TCCEE--ECGGG-----GGSCTTTHHHHHHHHHHTTCCEEE---EC
T ss_pred             eeECCCCCcCH----------HHHHHHHHHhC--CCeEE--EECch-----hccCCcCHHHHHHHHHHcCCCEEE---CC


Q ss_pred             CcCCH---HHHHHHHHHHHhhC-CCCeEEEEeCCccchHHHHHHHHH-HhCCCEEeec
Q 015894          272 GVGTP---GTVIPMLEAVLDAV-PVDKLAVHFHDTYGQALSNILASL-QMGISTVDSS  324 (398)
Q Consensus       272 G~~~P---~~v~~lv~~l~~~~-p~~~l~~H~Hnd~GlA~ANalaAl-~aGa~~VD~S  324 (398)
                      |....   .+=.+.++.+.+.. +.+.|-.=+    |.-..|.-.-+ ..|++.++.|
T Consensus       154 G~~~~~~a~~g~~~L~~Lv~~a~~ri~Im~Gg----GV~~~Ni~~l~~~tGv~e~H~s  207 (224)
T 2bdq_A          154 GSSNGEPIIENIKHIKALVEYANNRIEIMVGG----GVTAENYQYICQETGVKQAHGT  207 (224)
T ss_dssp             SCSSCCCGGGGHHHHHHHHHHHTTSSEEEECS----SCCTTTHHHHHHHHTCCEEEET
T ss_pred             CCCCCCcHHHHHHHHHHHHHhhCCCeEEEeCC----CCCHHHHHHHHHhhCCCEEccc

>3daq_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, diaminopimelate biosynthesis, lyase, schiff B; 1.45A {Staphylococcus aureus} SCOP: c.1.10.0 PDB: 3di1_A 3di0_A

Probab=84.70  E-value=16  Score=34.55  Aligned_cols=15  Identities=13%  Similarity=0.246  Sum_probs=9.6

Q ss_pred             CCCccHHHHHHHHHh
Q 015894          338 SGNVATEDVVYMLNG  352 (398)
Q Consensus       338 aGNa~lE~vv~~L~~  352 (398)
                      .+|..-+.++...+.
T Consensus       208 ~~n~~P~~~~~l~~a  222 (292)
T 3daq_A          208 IANVIPKEFQALYDA  222 (292)
T ss_dssp             GGGTCHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHH
Confidence            556666777666654

>3lg3_A Isocitrate lyase; conserved, CD, proteomics evidence (cytopl periplasmic), drug target functions; 1.40A {Yersinia pestis} SCOP: c.1.12.7 PDB: 1igw_A

Probab=84.59  E-value=4.2  Score=41.14  Aligned_cols=163  Identities=13%  Similarity=0.066  Sum_probs=103.8

Q ss_pred             hHHHHHHcCCCEEEEeccCchH----HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCC-----------
Q 015894          177 GFEAAVAAGAKEVAIFASASES----FSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPV-----------  241 (398)
Q Consensus       177 ~ie~a~~~Gv~~v~i~~~~Sd~----~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~-----------  241 (398)
                      -++...++|+-.|+|-+.+...    |...+-=.+.+++.++++.+.+.++..|..+.+ +.- ....-           
T Consensus       172 tv~~~~~aGaaGi~IEDq~~~~KkCGh~~gk~lv~~~e~~~rI~Aa~~A~~~~~~d~~I-iAR-TDa~aa~l~~s~~d~r  249 (435)
T 3lg3_A          172 LMKAMIEAGAAGVHFEDQLAAVKKCGHMGGKVLVPTQEAIQKLVAARLAADVLGVPTLL-IAR-TDADAADLLTSDCDPY  249 (435)
T ss_dssp             HHHHHHHHTCSEEEEESBCGGGCBCSTTCBCEECCHHHHHHHHHHHHHHHHHHTCCCEE-EEE-ECTTTCCEESCCCCGG
T ss_pred             HHHHHHHcCCEEEEEecCCCCccccCCCCCCeecCHHHHHHHHHHHHHHHHhcCCCeEE-EEE-cCCccccccccccccc
Confidence            4677789999999999886421    111111136889999998777776666654321 111 10000           


Q ss_pred             -----CC----------CCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccc--
Q 015894          242 -----EG----------MVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYG--  304 (398)
Q Consensus       242 -----~~----------r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~G--  304 (398)
                           .+          +...+..++=++...+ |||.|.+-  .|.-+++++..+.+.++..+|...+.+-+--.+.  
T Consensus       250 D~~fi~G~r~~eG~y~~~~gld~AI~Ra~AY~~-GAD~if~E--~~~~~~~ei~~f~~~v~~~~P~~~La~~~sPsfnw~  326 (435)
T 3lg3_A          250 DREFITGDRTAEGFFRTRAGIEQAISRGLAYAP-YADLVWCE--TSTPDLALAKRFADAVHAQFPGKLLAYNCSPSFNWK  326 (435)
T ss_dssp             GGGGEEEEECTTCCEEECCSHHHHHHHHHHHGG-GCSEEEEC--CSSCCHHHHHHHHHHHHHHSTTCEEEEECCSSSCHH
T ss_pred             cchhhcccccccccccccCCHHHHHHHHHHHHc-cCCEEEec--CCCCCHHHHHHHHHHhccccCCeEEEeCCCCCcccc
Confidence                 00          1345666666666666 99999872  2456899999999999988897666653322222  


Q ss_pred             --hH---HHH-HHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q 015894          305 --QA---LSN-ILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNG  352 (398)
Q Consensus       305 --lA---~AN-alaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~  352 (398)
                        +.   +++ .-.--++|+.++=.++.|+        ++-+.+++++...+.+
T Consensus       327 ~~~~d~~~~~f~~eLa~lG~~~v~~~la~~--------raa~~a~~~~a~~~~~  372 (435)
T 3lg3_A          327 KNLTDQQIASFQDELSAMGYKYQFITLAGI--------HSMWFNMFDLAHAYAQ  372 (435)
T ss_dssp             HHSCHHHHHHHHHHHHHTTEEEEEETTHHH--------HHHHHHHHHHHHHHHH
T ss_pred             ccCCHHHHHHHHHHHHHcCCcEEEeCcHHH--------HHHHHHHHHHHHHHHh
Confidence              11   111 1222358999999998888        7778889999888876

>3fst_A 5,10-methylenetetrahydrofolate reductase; TIM barrel, flavin, amino-acid biosynthesis, FAD, flavoprotein, methionine biosynthesis, NAD; HET: FAD MRY; 1.65A {Escherichia coli k-12} PDB: 3fsu_A* 1zp3_A* 1zpt_A* 1zrq_A* 1zp4_A* 2fmn_A* 2fmo_A* 1b5t_A*

Probab=84.58  E-value=29  Score=33.23  Aligned_cols=172  Identities=10%  Similarity=0.094  Sum_probs=106.3

Q ss_pred             HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHH-HhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHH
Q 015894          178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAA-RELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQ  256 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~a-k~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~  256 (398)
                      +++..+.+.+.|.|.....        +.+++..++    ++..+ ++.|+++..+++|.    +   .+.+.+.+....
T Consensus        45 ~~~l~~l~p~fvsVT~gag--------g~~r~~t~~----~a~~i~~~~g~~~v~Hltc~----~---~~~~~l~~~L~~  105 (304)
T 3fst_A           45 IDRLSSLKPKFVSVTYGAN--------SGERDRTHS----IIKGIKDRTGLEAAPHLTCI----D---ATPDELRTIARD  105 (304)
T ss_dssp             HHHHHTTCCSEEEECCCTT--------SSCHHHHHH----HHHHHHHHHCCCEEEEEEST----T---SCHHHHHHHHHH
T ss_pred             HHHHhcCCCCEEEEeeCCC--------CcchhHHHH----HHHHHHHHhCCCeeEEeecC----C---CCHHHHHHHHHH
Confidence            4555667888888876533        234444443    34333 45899999889852    2   477888888888


Q ss_pred             HHhCCCCE-EEE-ccCcCc--CCHHHHHHHHHHHHhhCCCCeEEEEe----CCc---cchHHHHHHHHHHhCCCEEeecc
Q 015894          257 LYDMGCSE-ISL-GDTIGV--GTPGTVIPMLEAVLDAVPVDKLAVHF----HDT---YGQALSNILASLQMGISTVDSSV  325 (398)
Q Consensus       257 l~~~Gad~-I~L-~DT~G~--~~P~~v~~lv~~l~~~~p~~~l~~H~----Hnd---~GlA~ANalaAl~aGa~~VD~Sv  325 (398)
                      +.++|++. +.| .|....  .......++|+.+++. ++..|++=+    |-.   ...-+.+...=++|||+.+=|-.
T Consensus       106 ~~~~GI~nILaLrGDpp~~~~~~~~~A~dLv~~ir~~-~~f~IgvA~yPE~Hp~a~~~~~d~~~Lk~KvdAGAdf~iTQ~  184 (304)
T 3fst_A          106 YWNNGIRHIVALRGDLPPGSGKPEMYASDLVTLLKEV-ADFDISVAAYPEVHPEAKSAQADLLNLKRKVDAGANRAITQF  184 (304)
T ss_dssp             HHHTTCCEEEEECCCCC------CCCHHHHHHHHHHH-CCCEEEEEECTTCCTTCSCHHHHHHHHHHHHHHTCCEEEECC
T ss_pred             HHHCCCCEEEEecCCCCCCCCCCCCCHHHHHHHHHHc-CCCeEEEEeCCCcCCCCCCHHHHHHHHHHHHHcCCCEEEeCc
Confidence            99999985 556 564322  1234577888888765 333455543    332   23346666777899999887765


Q ss_pred             ccCCCCCCCCCCCCCccHHHHHHHHHhCCCCC----ccC-hHHHHHHHHHHHHHhCCCCCC
Q 015894          326 SGLGGCPYAKGASGNVATEDVVYMLNGLGVRT----NVD-IRKLMIAGDFICKHLGRTSGS  381 (398)
Q Consensus       326 ~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t----~iD-l~~L~~~~~~v~~~~g~~~~~  381 (398)
                      .           --+-..+.++..++..|++.    ||= +.....+..+ .+..|..+|.
T Consensus       185 f-----------fD~~~~~~f~~~~r~~Gi~vPIi~GImPi~s~~~~~~~-~~~~Gv~iP~  233 (304)
T 3fst_A          185 F-----------FDVESYLRFRDRCVSAGIDVEIIPGILPVSNFKQAKKL-ADMTNVRIPA  233 (304)
T ss_dssp             C-----------SCHHHHHHHHHHHHHTTCCSCEECEECCCSCHHHHHHH-HHHHTCCCCH
T ss_pred             c-----------CCHHHHHHHHHHHHhcCCCCcEEEEecccCCHHHHHHH-HHcCCCcCCH
Confidence            4           22556677777777777653    221 2333333333 5777888874

>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}

Probab=84.56  E-value=2.7  Score=37.18  Aligned_cols=74  Identities=15%  Similarity=0.137  Sum_probs=48.7

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEE--EeCCccchHHHHHHHHHHhCCCEEe
Q 015894          245 VPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAV--HFHDTYGQALSNILASLQMGISTVD  322 (398)
Q Consensus       245 ~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~--H~Hnd~GlA~ANalaAl~aGa~~VD  322 (398)
                      .+.+...++++.+.+ |++.|-+.|..  ..+. -.++++.+++.+|+.++.+  -.|| .+.-  -+-.|.++||+.|.
T Consensus        10 ~~~~~~~~~~~~~~~-~v~~iev~~~~--~~~~-g~~~i~~l~~~~~~~~i~~~l~~~d-i~~~--~~~~a~~~Gad~v~   82 (207)
T 3ajx_A           10 LSTEAALELAGKVAE-YVDIIELGTPL--IKAE-GLSVITAVKKAHPDKIVFADMKTMD-AGEL--EADIAFKAGADLVT   82 (207)
T ss_dssp             SCHHHHHHHHHHHGG-GCSEEEECHHH--HHHH-CTHHHHHHHHHSTTSEEEEEEEECS-CHHH--HHHHHHHTTCSEEE
T ss_pred             CCHHHHHHHHHHhhc-cCCEEEECcHH--HHhh-CHHHHHHHHHhCCCCeEEEEEEecC-ccHH--HHHHHHhCCCCEEE
Confidence            468888899988887 89998886632  1222 1346888888876656554  4564 1111  23568899999886


Q ss_pred             ecc
Q 015894          323 SSV  325 (398)
Q Consensus       323 ~Sv  325 (398)
                      +..
T Consensus        83 vh~   85 (207)
T 3ajx_A           83 VLG   85 (207)
T ss_dssp             EET
T ss_pred             Eec
Confidence            543

>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}

Probab=84.52  E-value=3.8  Score=39.11  Aligned_cols=37  Identities=30%  Similarity=0.604  Sum_probs=19.2

Q ss_pred             HhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHH---hCCCC
Q 015894          315 QMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLN---GLGVR  356 (398)
Q Consensus       315 ~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~---~~Gi~  356 (398)
                      +.|.. |.+.+.=..+||+.    |-.+.|.++..++   +.|.+
T Consensus       135 ~~G~~-V~~~l~~~~~~e~~----~~~~~~~~~~~~~~~~~~G~d  174 (302)
T 2ftp_A          135 QHQVR-VRGYISCVLGCPYD----GDVDPRQVAWVARELQQMGCY  174 (302)
T ss_dssp             HTTCE-EEEEEECTTCBTTT----BCCCHHHHHHHHHHHHHTTCS
T ss_pred             HCCCe-EEEEEEEEeeCCcC----CCCCHHHHHHHHHHHHHcCCC
Confidence            45554 55555555556654    2445555555554   45553

>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0

Probab=84.42  E-value=2.3  Score=40.66  Aligned_cols=82  Identities=11%  Similarity=0.111  Sum_probs=68.9

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcCc---CCHHHHHHHHHHHHhhCC-CCeEEEE-eCCccchHHHHHHHHHHhC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGV---GTPGTVIPMLEAVLDAVP-VDKLAVH-FHDTYGQALSNILASLQMG  317 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p-~~~l~~H-~Hnd~GlA~ANalaAl~aG  317 (398)
                      +..|.+.+.++++.+.+.|++.|.++-|.|=   ++.++-.++++.+.+... .++|-++ ++|+..-++..+..|-++|
T Consensus        20 g~iD~~~l~~lv~~li~~Gv~gl~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~a~~~G   99 (300)
T 3eb2_A           20 GRVRADVMGRLCDDLIQAGVHGLTPLGSTGEFAYLGTAQREAVVRATIEAAQRRVPVVAGVASTSVADAVAQAKLYEKLG   99 (300)
T ss_dssp             SCBCHHHHHHHHHHHHHTTCSCBBTTSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCBEEEEEESSHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccCccccCHHHHHHHHHHHHHHhCCCCcEEEeCCCCCHHHHHHHHHHHHHcC
Confidence            5789999999999999999999999999995   778888888888887653 3456555 4788999999999999999


Q ss_pred             CCEEeec
Q 015894          318 ISTVDSS  324 (398)
Q Consensus       318 a~~VD~S  324 (398)
                      |+.+=+.
T Consensus       100 adavlv~  106 (300)
T 3eb2_A          100 ADGILAI  106 (300)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEc
Confidence            9977553

>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A

Probab=84.42  E-value=12  Score=35.21  Aligned_cols=14  Identities=21%  Similarity=0.105  Sum_probs=9.4

Q ss_pred             CCCccHHHHHHHHH
Q 015894          338 SGNVATEDVVYMLN  351 (398)
Q Consensus       338 aGNa~lE~vv~~L~  351 (398)
                      .+|..-+.++...+
T Consensus       197 ~an~~P~~~~~l~~  210 (286)
T 2r91_A          197 SANYLPELLAGIRD  210 (286)
T ss_dssp             GGTTCHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHH
Confidence            56777777766654

>2qkf_A 3-deoxy-D-manno-octulosonic acid 8- phosphate SYN; manno-octulosonate, synthase, lipopolysaccharide, KDOP, KDO8 KDO8PS; 1.75A {Neisseria meningitidis serogroup B} PDB: 3stf_A 3qpy_A 3ste_A 3qpz_A 3qq0_A 3fyo_A* 3qq1_A 3fyp_A* 3stc_A 3stg_A 1phw_A 1g7v_A* 1gg0_A 1phq_A* 1d9e_A 1pl9_A* 1q3n_A* 1x6u_A* 1x8f_A 1g7u_A*

Probab=84.38  E-value=21  Score=33.82  Aligned_cols=180  Identities=12%  Similarity=0.078  Sum_probs=102.1

Q ss_pred             CHHHHHHHHHHHHhcC----CCEEEEecCCC-CCccc-CCC--CHHHHHHHHHhc---cCCcEEEEeCCHhhHHHHHHcC
Q 015894          117 PAVVKVELIKLLVSSG----LAVVEATSFVS-PKWVP-QLA--DAKDVMAAIQNV---EGARFPVLTPNLKGFEAAVAAG  185 (398)
Q Consensus       117 ~~~~k~~ia~~L~~aG----v~~IEvG~~~~-~~~~p-~~~--D~~~v~~~i~~~---~~~~l~~l~~n~~~ie~a~~~G  185 (398)
                      +.+.-+++++.|.++|    +..+=-.+|-. |+--| .+.  +.++-++.+++.   .+..+..=......++.+.+. 
T Consensus        27 ~~e~a~~~a~~lk~~ga~~~~~~v~k~~f~k~prts~~~~~g~~l~~gl~~l~~~~~~~Gl~~~te~~d~~~~~~l~~~-  105 (280)
T 2qkf_A           27 SLDSTLQTCAHYVEVTRKLGIPYIFKASFDKANRSSIHSYRGVGLEEGLKIFEKVKAEFGIPVITDVHEPHQCQPVAEV-  105 (280)
T ss_dssp             CHHHHHHHHHHHHHHHHHHTCCEEEEEESCCSSCSSSSSCCCSCHHHHHHHHHHHHHHHCCCEEEECCSGGGHHHHHHH-
T ss_pred             CHHHHHHHHHHHHHhhhhcceeEEEeeeeecCCCCChHHhhccchHHHHHHHHHHHHHcCCcEEEecCCHHHHHHHHhh-
Confidence            7888899999998876    44222222221 21111 111  223334444432   244443333467778877777 


Q ss_pred             CCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC-CCHHHHHHHHHHHHhCCCCE
Q 015894          186 AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGM-VPPSKVAYVSKQLYDMGCSE  264 (398)
Q Consensus       186 v~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r-~~~~~l~~~a~~l~~~Gad~  264 (398)
                      ++.+.|-..          ++..-       ++.+++.+.|.+|.  +.       .+. .+++.+...++.+...|.+.
T Consensus       106 ~d~~kIga~----------~~~n~-------~ll~~~a~~~kPV~--lk-------~G~~~t~~e~~~A~~~i~~~Gn~~  159 (280)
T 2qkf_A          106 CDVIQLPAF----------LARQT-------DLVVAMAKTGNVVN--IK-------KPQFLSPSQMKNIVEKFHEAGNGK  159 (280)
T ss_dssp             CSEEEECGG----------GTTBH-------HHHHHHHHTCCEEE--EE-------CCTTSCGGGHHHHHHHHHHTTCCC
T ss_pred             CCEEEECcc----------cccCH-------HHHHHHHcCCCcEE--EE-------CCCCCCHHHHHHHHHHHHHcCCCe
Confidence            898888532          11111       13444456788875  33       122 36788888888888999876


Q ss_pred             EEEccCcCcCCHH-----HHHHHHHHHHhhCCCCeEEE-EeCCc----------cc---hHHHHHHHHHHhCCC--EEee
Q 015894          265 ISLGDTIGVGTPG-----TVIPMLEAVLDAVPVDKLAV-HFHDT----------YG---QALSNILASLQMGIS--TVDS  323 (398)
Q Consensus       265 I~L~DT~G~~~P~-----~v~~lv~~l~~~~p~~~l~~-H~Hnd----------~G---lA~ANalaAl~aGa~--~VD~  323 (398)
                      +.|+--.+.. |.     .+. -+..+++.+|..+|++ =.|-+          .|   +...-+.+|+..||+  +|+.
T Consensus       160 i~L~~rg~~~-~~~~~~~dl~-~i~~lk~~~~~~pV~~D~sH~~q~~~~~~~~s~g~~~~~~~~a~aava~Ga~G~~IE~  237 (280)
T 2qkf_A          160 LILCERGSSF-GYDNLVVDML-GFGVMKQTCGNLPVIFDVTHSLQTRDAGSAASGGRRAQALDLALAGMATRLAGLFLES  237 (280)
T ss_dssp             EEEEECCEEC-STTCEECCTT-HHHHHHHHTTTCCEEEEHHHHCC----------CHHHHHHHHHHHHHTTCCSEEEEEC
T ss_pred             EEEEECCCCC-CCCccccCHH-HHHHHHHhCCCCCEEEECCCCccccCccccccCCchhhHHHHHHHHHHcCCCEEEEee
Confidence            6666544332 32     233 4567888876678999 33332          34   346667888999996  6655


Q ss_pred             cc
Q 015894          324 SV  325 (398)
Q Consensus       324 Sv  325 (398)
                      =+
T Consensus       238 H~  239 (280)
T 2qkf_A          238 HP  239 (280)
T ss_dssp             --
T ss_pred             cC
Confidence            43

>4eiv_A Deoxyribose-phosphate aldolase; chemotherapy, brain cysts, bradyzoite, structural genomics, for structural genomics of infectious diseases; 1.37A {Toxoplasma gondii} PDB: 3qyq_A*

Probab=84.32  E-value=5.7  Score=38.18  Aligned_cols=109  Identities=15%  Similarity=0.052  Sum_probs=71.6

Q ss_pred             EeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCH------HHHHHHHHHHHhhCCCC----eEEEEeCCc
Q 015894          233 LSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTP------GTVIPMLEAVLDAVPVD----KLAVHFHDT  302 (398)
Q Consensus       233 l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P------~~v~~lv~~l~~~~p~~----~l~~H~Hnd  302 (398)
                      ++.+.|.|.. ..+.+.-+.-++.+.+.||+.|-+.=-.|.+.-      ..+++-|+.+++..++.    .|+.-.=++
T Consensus        86 V~tVigFP~G-~~~~e~K~~Ea~~Av~~GAdEIDmVinig~lk~~~~g~~~~V~~eI~~v~~a~~~~~lKVIlEt~~Lt~  164 (297)
T 4eiv_A           86 VCAAVNFPEG-TGTPDTVSLEAVGALKDGADEIECLIDWRRMNENVADGESRIRLLVSEVKKVVGPKTLKVVLSGGELQG  164 (297)
T ss_dssp             EEEEESTTTC-CCCHHHHHHHHHHHHHTTCSEEEEECCTHHHHHCHHHHHHHHHHHHHHHHHHHTTSEEEEECCSSCCCC
T ss_pred             EEEEecCCCC-CCCHHHHHHHHHHHHHcCCCEEEeeeeHHHHhcccCCcHHHHHHHHHHHHHHhcCCceEEEEecccCCc
Confidence            3444567854 455554444577788899999988877777544      45677777777765432    123233344


Q ss_pred             cchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q 015894          303 YGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLN  351 (398)
Q Consensus       303 ~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~  351 (398)
                      ..+-...+..|+++||+.|-+|-+ .        .+|++.+|++..+++
T Consensus       165 ~e~i~~A~~ia~~AGADFVKTSTG-f--------~~~gAT~edV~lM~~  204 (297)
T 4eiv_A          165 GDIISRAAVAALEGGADFLQTSSG-L--------GATHATMFTVHLISI  204 (297)
T ss_dssp             HHHHHHHHHHHHHHTCSEEECCCS-S--------SSCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCEEEcCCC-C--------CCCCCCHHHHHHHHH
Confidence            444345678889999999999864 3        345788888877664

>3o6c_A PNP synthase, pyridoxine 5'-phosphate synthase; structural genomics, IDP90671, center for structural genomic infectious diseases; HET: MSE; 1.87A {Campylobacter jejuni subsp} SCOP: c.1.24.0 PDB: 3o6d_A*

Probab=84.31  E-value=2.4  Score=39.96  Aligned_cols=67  Identities=15%  Similarity=0.193  Sum_probs=46.3

Q ss_pred             cCCcEEEEe-CCHhhHHHHHHcCCCEEEEeccCc-hHHH------------hhhcCCC-------HHHHHHHHHHHHHHH
Q 015894          164 EGARFPVLT-PNLKGFEAAVAAGAKEVAIFASAS-ESFS------------KSNINCT-------IEDSLIRYRDVALAA  222 (398)
Q Consensus       164 ~~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~~~S-d~~~------------~~~~~~s-------~~~~l~~~~~~v~~a  222 (398)
                      .+++++.++ +..++++.|.+.|++.|-++...= +.+.            -..+..+       .++.++++.+++++|
T Consensus       123 ~GIrVSLFIDpd~~qi~aA~~~GAd~IELhTG~YA~a~~~~~sn~~~~~~~~~~l~~~~~~~~~~~~~el~~l~~aA~~A  202 (260)
T 3o6c_A          123 ANIEVSLFINPSLEDIEKSKILKAQFIELHTGHYANLHNALFSNISHTAFALKELDQDKKTLQAQFEKELQNLELCAKKG  202 (260)
T ss_dssp             TTCEEEEEECSCHHHHHHHHHTTCSEEEECCHHHHHHHHHHHSSGGGSTTCCGGGCSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEeCCCHHHHHHHHHhCCCEEEEechHhhhhhhccccccccccccccccccccchhhHHHHHHHHHHHHHHHHH
Confidence            366767666 677899999999999999965410 1110            0111122       345688899999999


Q ss_pred             HhCCCcEE
Q 015894          223 RELSIPVR  230 (398)
Q Consensus       223 k~~G~~v~  230 (398)
                      +++|+.|.
T Consensus       203 ~~lGL~Vn  210 (260)
T 3o6c_A          203 LELGLKVA  210 (260)
T ss_dssp             HHTTCEEE
T ss_pred             HHcCCEEe
Confidence            99999987

>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A*

Probab=84.25  E-value=15  Score=35.66  Aligned_cols=78  Identities=13%  Similarity=0.066  Sum_probs=42.8

Q ss_pred             HHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC-CCCEE--EEccCcCc-CCHHHHHHHHHHHHhhCC
Q 015894          216 RDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM-GCSEI--SLGDTIGV-GTPGTVIPMLEAVLDAVP  291 (398)
Q Consensus       216 ~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~-Gad~I--~L~DT~G~-~~P~~v~~lv~~l~~~~p  291 (398)
                      .+.++.|++.|.....-+     .|.-.+.+.+.+.+..+.+.+. +...+  .++...|. ++|+.+.++.+    ..|
T Consensus       116 i~la~~A~~~Gadavlv~-----~P~Y~~~s~~~l~~~f~~VA~a~~lPiilYn~P~~tg~~l~~e~~~~La~----~~p  186 (343)
T 2v9d_A          116 IELSQHAQQAGADGIVVI-----NPYYWKVSEANLIRYFEQVADSVTLPVMLYNFPALTGQDLTPALVKTLAD----SRS  186 (343)
T ss_dssp             HHHHHHHHHHTCSEEEEE-----CCSSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSSCCCHHHHHHHHH----HCT
T ss_pred             HHHHHHHHhcCCCEEEEC-----CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCchhcCcCCCHHHHHHHHH----hCC
Confidence            345567777787643111     3554455777777777666554 44432  45555665 56666655532    356


Q ss_pred             CCeEEE-EeCCcc
Q 015894          292 VDKLAV-HFHDTY  303 (398)
Q Consensus       292 ~~~l~~-H~Hnd~  303 (398)
                      ++ +++ ....|.
T Consensus       187 nI-vgiKdssgd~  198 (343)
T 2v9d_A          187 NI-IGIKDTIDSV  198 (343)
T ss_dssp             TE-EEEEECCSCH
T ss_pred             CE-EEEEeCCCCH
Confidence            63 666 344443

>3l23_A Sugar phosphate isomerase/epimerase; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.70A {Parabacteroides distasonis}

Probab=84.22  E-value=19  Score=33.66  Aligned_cols=113  Identities=9%  Similarity=0.021  Sum_probs=64.9

Q ss_pred             hHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeee-----cCCCC------C--
Q 015894          177 GFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVV-----GCPVE------G--  243 (398)
Q Consensus       177 ~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~f-----g~~~~------~--  243 (398)
                      -++.+.++|.+.|-++... +.   .-.+.+       ..++.+.+++.|+.+.. +...+     ..|+.      .  
T Consensus        34 ~l~~~a~~G~~~VEl~~~~-~~---~~~~~~-------~~~~~~~l~~~GL~v~~-~~~~~~~~~~~~p~~~~~~~~~~~  101 (303)
T 3l23_A           34 NLRKVKDMGYSKLELAGYG-KG---AIGGVP-------MMDFKKMAEDAGLKIIS-SHVNPVDTSISDPFKAMIFKYSKE  101 (303)
T ss_dssp             HHHHHHHTTCCEEEECCEE-TT---EETTEE-------HHHHHHHHHHTTCEEEE-EECCCBCTTCSSTTTTBCCSCCTT
T ss_pred             HHHHHHHcCCCEEEecccc-Cc---ccCCCC-------HHHHHHHHHHcCCeEEE-EecccccccccCcccccccccchh
Confidence            4678889999999987421 10   001112       23455677889999853 22111     11111      0  


Q ss_pred             --CCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhC-----CCCe--EEEEeCC
Q 015894          244 --MVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAV-----PVDK--LAVHFHD  301 (398)
Q Consensus       244 --r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~-----p~~~--l~~H~Hn  301 (398)
                        ....+.+.+.++.+.++|++.|.+.-.....++.....+++.+++..     -++.  |.+|-|+
T Consensus       102 ~~~~~~~~~~~~i~~A~~lG~~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~~~l~~En~~  168 (303)
T 3l23_A          102 VTPKIMEYWKATAADHAKLGCKYLIQPMMPTITTHDEAKLVCDIFNQASDVIKAEGIATGFGYHNHN  168 (303)
T ss_dssp             THHHHHHHHHHHHHHHHHTTCSEEEECSCCCCCSHHHHHHHHHHHHHHHHHHHHTTCTTCEEEECCS
T ss_pred             hHHHHHHHHHHHHHHHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCcceEEEccCc
Confidence              01135666778888899999998852211234555655555555432     2578  9999997

>3tva_A Xylose isomerase domain protein TIM barrel; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 2.15A {Planctomyces limnophilus}

Probab=84.17  E-value=16  Score=33.43  Aligned_cols=125  Identities=14%  Similarity=0.075  Sum_probs=65.7

Q ss_pred             hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeee-cC--------------C
Q 015894          176 KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVV-GC--------------P  240 (398)
Q Consensus       176 ~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~f-g~--------------~  240 (398)
                      +-++.+.++|.+.|-+...-..       ..+.    +.+.++.+.+++.|+.+... ...+ |.              +
T Consensus        25 ~~l~~~~~~G~~~vEl~~~~~~-------~~~~----~~~~~~~~~l~~~gl~~~~~-~~~~~g~~~~~~~~~~~~~~~~   92 (290)
T 3tva_A           25 VHLEVAQDLKVPTVQVHAPHPH-------TRTR----EHAQAFRAKCDAAGIQVTVI-FGGFDGESYADIPTTARTVGLV   92 (290)
T ss_dssp             BCHHHHHHTTCSEEEEECCCGG-------GCSH----HHHHHHHHHHHHTTCEEEEE-ECCCTTCCCSSHHHHHHHSSSC
T ss_pred             HHHHHHHHcCCCEEEecCCCCC-------cCCH----HHHHHHHHHHHHcCCEEEEE-eeccCCcccccccccccccCCC
Confidence            4578888899998888753211       1121    23445567777889887642 2111 11              1


Q ss_pred             CCC--CCCHHHHHHHHHHHHhCCCCEEEEccCcCcC---CHHHHHHHHHHHHhh---C--CCCeEEEEeCCccchHHHHH
Q 015894          241 VEG--MVPPSKVAYVSKQLYDMGCSEISLGDTIGVG---TPGTVIPMLEAVLDA---V--PVDKLAVHFHDTYGQALSNI  310 (398)
Q Consensus       241 ~~~--r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~---~P~~v~~lv~~l~~~---~--p~~~l~~H~Hnd~GlA~ANa  310 (398)
                      +..  ....+.+.+.++.+.++|++.|.+.  .|..   .......+++.+++.   .  -++.|.+|.|.+..-.+...
T Consensus        93 ~~~~r~~~~~~~~~~i~~a~~lG~~~v~~~--~G~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lE~~~~~~~~~~~l  170 (290)
T 3tva_A           93 PLETRASRVAEMKEISDFASWVGCPAIGLH--IGFVPESSSPDYSELVRVTQDLLTHAANHGQAVHLETGQESADHLLEF  170 (290)
T ss_dssp             STTTHHHHHHHHHHHHHHHHHHTCSEEEEC--CCCCCCTTSHHHHHHHHHHHHHHHHHHTTTCEEEEECCSSCHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHcCCCEEEEc--CCCCcccchHHHHHHHHHHHHHHHHHHHcCCEEEEecCCCCHHHHHHH
Confidence            110  0123566677777788899888763  1211   333444444443332   1  24678888886433333333


Q ss_pred             HHHH
Q 015894          311 LASL  314 (398)
Q Consensus       311 laAl  314 (398)
                      +..+
T Consensus       171 ~~~~  174 (290)
T 3tva_A          171 IEDV  174 (290)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            3333

>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A

Probab=84.12  E-value=3  Score=39.68  Aligned_cols=82  Identities=16%  Similarity=0.014  Sum_probs=67.3

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcC---cCCHHHHHHHHHHHHhhCC-CCeEEEE-eCCccchHHHHHHHHHHhC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIG---VGTPGTVIPMLEAVLDAVP-VDKLAVH-FHDTYGQALSNILASLQMG  317 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~lv~~l~~~~p-~~~l~~H-~Hnd~GlA~ANalaAl~aG  317 (398)
                      +..|.+.+.++++.+.+.|++.|.++-|.|   .+++++-.++++.+.+... .+++-+| ++|+..-++..+..|-++|
T Consensus        17 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~a~~~G   96 (292)
T 2ojp_A           17 GNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSG   96 (292)
T ss_dssp             SCBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHHTTTSS
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHhcC
Confidence            578999999999999999999999999998   5677888888888887653 3555554 5678888899999999999


Q ss_pred             CCEEeec
Q 015894          318 ISTVDSS  324 (398)
Q Consensus       318 a~~VD~S  324 (398)
                      |+.+=+.
T Consensus        97 adavlv~  103 (292)
T 2ojp_A           97 IVGCLTV  103 (292)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEC
Confidence            9977544

>1e0t_A Pyruvate kinase, PK; phosphotransferase, glycolysis, allostery; 1.8A {Escherichia coli} SCOP: b.58.1.1 c.1.12.1 c.49.1.1 PDB: 1pky_A 1e0u_A

Probab=84.05  E-value=40  Score=34.39  Aligned_cols=249  Identities=11%  Similarity=0.082  Sum_probs=130.3

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-c-CCcEEEEeCCHhhHH---HHHHcCCCEE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-E-GARFPVLTPNLKGFE---AAVAAGAKEV  189 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~-~~~l~~l~~n~~~ie---~a~~~Gv~~v  189 (398)
                      .++..++..| +...+.|++.|=+.|--++      +|..++.+.+++. . .+.+.+..-+.++++   .-++. .|  
T Consensus       169 ~ltekD~~Di-~~~l~~gvD~I~lsfV~sa------eDv~~~~~~l~~~~~~~i~IiakIEt~eav~nldeI~~~-sD--  238 (470)
T 1e0t_A          169 ALAEKDKQDL-IFGCEQGVDFVAASFIRKR------SDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEA-SD--  238 (470)
T ss_dssp             SSCHHHHHHH-HHHHHHTCSEEEESSCCSH------HHHHHHHHHHHTTTCTTCEEEEEECSHHHHHTHHHHHHH-SS--
T ss_pred             CCCcCCHHHH-HHHHHcCCCEEEECCCCCH------HHHHHHHHHHHHhcCCCceEEEEECCHHHHHhHHHHHHH-CC--
Confidence            3566676665 5566789999977653222      3444444555443 2 355555555555443   33333 56  


Q ss_pred             EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEE-EEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE-
Q 015894          190 AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRG-YLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL-  267 (398)
Q Consensus       190 ~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~-~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L-  267 (398)
                      .+++.-.|.-.+    +..++.....+.+++.|+++|+.|-. +=|... .-...+.+..++-+++.... -|+|.+-| 
T Consensus       239 gImVargDLgve----ig~e~v~~~qk~ii~~araaGkpvI~ATQMLeS-Mi~~p~PTRAEvsDVanAV~-dG~DavMLS  312 (470)
T 1e0t_A          239 GIMVARGDLGVE----IPVEEVIFAQKMMIEKCIRARKVVITATMMLDS-MIKNPRPTDAEAGDVANAIL-DGTDAVMLS  312 (470)
T ss_dssp             EEEEEHHHHHHH----SCHHHHHHHHHHHHHHHHHHTCEEEEECC----------CCCHHHHHHHHHHHH-HTCSEEEEC
T ss_pred             EEEECchHhhhh----cCHHHHHHHHHHHHHHHHHcCCCEEEechhhHh-hccCCCccHHHHhhhhHhhh-cCccEEEec
Confidence            444444555333    23466667778899999999998742 111110 11122456677778776554 58999998 


Q ss_pred             ccCcCcCCHHHHHHHHHHHHhhC----CCC-eEEEE--eCC-ccchHHHHHHHHHHhCCC-EEeeccccCC-----C-CC
Q 015894          268 GDTIGVGTPGTVIPMLEAVLDAV----PVD-KLAVH--FHD-TYGQALSNILASLQMGIS-TVDSSVSGLG-----G-CP  332 (398)
Q Consensus       268 ~DT~G~~~P~~v~~lv~~l~~~~----p~~-~l~~H--~Hn-d~GlA~ANalaAl~aGa~-~VD~Sv~GlG-----e-cp  332 (398)
                      ..|+-.-.|.+..+.+..+..+.    ... .+..+  .++ +-..|.+...+|...++. +|-.|-.|--     . .|
T Consensus       313 gETA~G~yPveaV~~m~~I~~~~E~~~~~~~~~~~~~~~~~~~~aia~aa~~~a~~l~a~aIv~~T~sG~ta~~isr~RP  392 (470)
T 1e0t_A          313 GESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFP  392 (470)
T ss_dssp             CC------CHHHHHHHHHHHHHHHTTCCCCCC---------CHHHHHHHHHHHHHHTTCSBEEEECSSSHHHHHHHTTCC
T ss_pred             ccccCCCCHHHHHHHHHHHHHHHHhhhhhhHHHhhhccccchHHHHHHHHHHHHHhcCCCEEEEECCChhHHHHHHhhCC
Confidence            46777778988777777766443    110 01101  111 223566666677778887 5556666643     1 22


Q ss_pred             CCCCCCCCccHHHHHHHHHh-CCCCC-----ccChHHHHHHHHHHHHHhCCCCC
Q 015894          333 YAKGASGNVATEDVVYMLNG-LGVRT-----NVDIRKLMIAGDFICKHLGRTSG  380 (398)
Q Consensus       333 ~a~graGNa~lE~vv~~L~~-~Gi~t-----~iDl~~L~~~~~~v~~~~g~~~~  380 (398)
                      -+|- -.-.+-+.+...|.- .|+.+     .-+.+.+.+.+....+..|+--+
T Consensus       393 ~~pI-~a~t~~~~~~r~l~l~~GV~p~~~~~~~~~~~~~~~a~~~~~~~g~~~~  445 (470)
T 1e0t_A          393 DATI-LALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHK  445 (470)
T ss_dssp             SSBE-EEEESCHHHHHHGGGSTTEEEEECSCCCSHHHHHHHHHHHHHHTSSSCT
T ss_pred             CCCE-EEECCCHHHHHHhhhhccceEEEecCCCCHHHHHHHHHHHHHHCCCCCC
Confidence            2221 112344677666654 35431     23456666655555555565433

>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp}

Probab=83.91  E-value=5.6  Score=38.17  Aligned_cols=74  Identities=15%  Similarity=0.082  Sum_probs=38.3

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEcc--CcCcCCH--HHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCE
Q 015894          245 VPPSKVAYVSKQLYDMGCSEISLGD--TIGVGTP--GTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGIST  320 (398)
Q Consensus       245 ~~~~~l~~~a~~l~~~Gad~I~L~D--T~G~~~P--~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~  320 (398)
                      .+.+.-+++++.+.++|++.|-+.=  +.- ..|  .+..++++.+++. |+.++..+.-|.     ...-.|+++|++.
T Consensus        25 ~~~e~k~~i~~~L~~~Gv~~IE~g~~~~~~-~~p~~~d~~~~~~~~~~~-~~~~~~~l~~~~-----~~i~~a~~~g~~~   97 (307)
T 1ydo_A           25 IATEDKITWINQLSRTGLSYIEITSFVHPK-WIPALRDAIDVAKGIDRE-KGVTYAALVPNQ-----RGLENALEGGINE   97 (307)
T ss_dssp             CCHHHHHHHHHHHHTTTCSEEEEEECSCTT-TCGGGTTHHHHHHHSCCC-TTCEEEEECCSH-----HHHHHHHHHTCSE
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEECCCcCcc-cccccCCHHHHHHHhhhc-CCCeEEEEeCCH-----HhHHHHHhCCcCE
Confidence            4566777777777777777665531  000 011  1222334443332 555666666442     2355566677776


Q ss_pred             Eeecc
Q 015894          321 VDSSV  325 (398)
Q Consensus       321 VD~Sv  325 (398)
                      |...+
T Consensus        98 v~i~~  102 (307)
T 1ydo_A           98 ACVFM  102 (307)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            66543

>1zfj_A Inosine monophosphate dehydrogenase; IMPDH, CBS domains, oxidoreductase; HET: IMP; 1.90A {Streptococcus pyogenes} SCOP: c.1.5.1 d.37.1.1

Probab=83.80  E-value=3.9  Score=41.43  Aligned_cols=69  Identities=16%  Similarity=0.235  Sum_probs=49.1

Q ss_pred             HHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeecc
Q 015894          251 AYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSV  325 (398)
Q Consensus       251 ~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv  325 (398)
                      .+.++.+.++|+|.|.+. +++ ..+..+.+.+..+++.+|++++..-.=-    ...-+..++++|++.|+++.
T Consensus       235 ~~~a~~l~~~G~d~ivi~-~a~-g~~~~~~~~i~~l~~~~p~~pvi~G~v~----t~~~a~~~~~~Gad~I~vg~  303 (491)
T 1zfj_A          235 FERAEALFEAGADAIVID-TAH-GHSAGVLRKIAEIRAHFPNRTLIAGNIA----TAEGARALYDAGVDVVKVGI  303 (491)
T ss_dssp             HHHHHHHHHHTCSEEEEC-CSC-TTCHHHHHHHHHHHHHCSSSCEEEEEEC----SHHHHHHHHHTTCSEEEECS
T ss_pred             HHHHHHHHHcCCCeEEEe-eec-CcchhHHHHHHHHHHHCCCCcEeCCCcc----CHHHHHHHHHcCCCEEEECc
Confidence            455777888999998855 444 3556778889999999977666532111    23556678899999999853

>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A

Probab=83.80  E-value=20  Score=34.16  Aligned_cols=78  Identities=10%  Similarity=0.011  Sum_probs=40.4

Q ss_pred             HHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC-CCCE--EEEccCcCc-CCHHHHHHHHHHHHhhCC
Q 015894          216 RDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM-GCSE--ISLGDTIGV-GTPGTVIPMLEAVLDAVP  291 (398)
Q Consensus       216 ~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~-Gad~--I~L~DT~G~-~~P~~v~~lv~~l~~~~p  291 (398)
                      .+.++.|++.|.....-+     .|.-.+.+.+.+.+..+.+.+. +...  -.++...|. ++|+.+.++.+    ..|
T Consensus        97 i~la~~A~~~Gadavlv~-----~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~----~~p  167 (306)
T 1o5k_A           97 LKLVKQAEKLGANGVLVV-----TPYYNKPTQEGLYQHYKYISERTDLGIVVYNVPGRTGVNVLPETAARIAA----DLK  167 (306)
T ss_dssp             HHHHHHHHHHTCSEEEEE-----CCCSSCCCHHHHHHHHHHHHTTCSSCEEEEECHHHHSCCCCHHHHHHHHH----HCT
T ss_pred             HHHHHHHHhcCCCEEEEC-----CCCCCCCCHHHHHHHHHHHHHhCCCCEEEEeCccccCcCCCHHHHHHHHH----hCC
Confidence            344566667777643111     3444455667777666666553 3333  234555664 55555555532    246


Q ss_pred             CCeEEE-EeCCcc
Q 015894          292 VDKLAV-HFHDTY  303 (398)
Q Consensus       292 ~~~l~~-H~Hnd~  303 (398)
                      ++ +++ ....|.
T Consensus       168 nI-vgiKdssgd~  179 (306)
T 1o5k_A          168 NV-VGIXEANPDI  179 (306)
T ss_dssp             TE-EEEEECCCCH
T ss_pred             CE-EEEeCCCCCH
Confidence            53 555 444443

>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A

Probab=83.72  E-value=20  Score=34.17  Aligned_cols=72  Identities=13%  Similarity=0.039  Sum_probs=39.3

Q ss_pred             HHHHHHHHhCCCcEEEEEeeeecCCCC---CCCCHHHHHHHHHHHHh-CCCCE--EEEccCcCc-CCHHHHHHHHHHHHh
Q 015894          216 RDVALAARELSIPVRGYLSCVVGCPVE---GMVPPSKVAYVSKQLYD-MGCSE--ISLGDTIGV-GTPGTVIPMLEAVLD  288 (398)
Q Consensus       216 ~~~v~~ak~~G~~v~~~l~~~fg~~~~---~r~~~~~l~~~a~~l~~-~Gad~--I~L~DT~G~-~~P~~v~~lv~~l~~  288 (398)
                      .+.++.|++.|.....  .   ..|.-   .+.+.+.+.+..+.+.+ .+...  ..++- .|. ++|+.    +..|.+
T Consensus        93 i~la~~A~~~Gadavl--v---~~Pyy~~~~~~s~~~l~~~f~~va~a~~lPiilYn~P~-tg~~l~~~~----~~~La~  162 (309)
T 3fkr_A           93 AARSLRAQQLGAAMVM--A---MPPYHGATFRVPEAQIFEFYARVSDAIAIPIMVQDAPA-SGTALSAPF----LARMAR  162 (309)
T ss_dssp             HHHHHHHHHTTCSEEE--E---CCSCBTTTBCCCHHHHHHHHHHHHHHCSSCEEEEECGG-GCCCCCHHH----HHHHHH
T ss_pred             HHHHHHHHHcCCCEEE--E---cCCCCccCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCC-CCCCCCHHH----HHHHHh
Confidence            4556777888876431  1   13543   34567777776666655 34443  34554 354 44433    444444


Q ss_pred             hCCCCeEEEE
Q 015894          289 AVPVDKLAVH  298 (398)
Q Consensus       289 ~~p~~~l~~H  298 (398)
                      ++|++ +++-
T Consensus       163 ~~pnI-vgiK  171 (309)
T 3fkr_A          163 EIEQV-AYFX  171 (309)
T ss_dssp             HSTTE-EEEE
T ss_pred             hCCCE-EEEE
Confidence            56764 6766

>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus}

Probab=83.72  E-value=3.1  Score=40.01  Aligned_cols=66  Identities=8%  Similarity=0.038  Sum_probs=43.2

Q ss_pred             HHHHHHHhCCCCEEEEccCcC-cCCHHHHHH--------HHHHHHhhCCCCeEEEEeCCccchHHHHHHHHH-HhCCCEE
Q 015894          252 YVSKQLYDMGCSEISLGDTIG-VGTPGTVIP--------MLEAVLDAVPVDKLAVHFHDTYGQALSNILASL-QMGISTV  321 (398)
Q Consensus       252 ~~a~~l~~~Gad~I~L~DT~G-~~~P~~v~~--------lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl-~aGa~~V  321 (398)
                      ++++...++|++.|.+.|+.| .++|....+        +++.+++. |+.++-.|+..+ +    +.+..+ +.|++.+
T Consensus       183 ~~~~~~~~aGad~i~i~d~~~~~lsp~~f~ef~~p~~k~i~~~i~~~-~g~~~i~~~~g~-~----~~l~~l~~~g~d~~  256 (338)
T 2eja_A          183 AYLKEQIKAGADVVQIFDSWVNNLSLEDYGEYVYPYVNYLISELKDF-SDTPVIYFFRGS-S----SFIDLAVDYRADAL  256 (338)
T ss_dssp             HHHHHHHHTTCSEEEEEETTGGGSCHHHHHHHTHHHHHHHHHHHHHH-CCCCEEEEESSH-H----HHHHHHTTSCCSEE
T ss_pred             HHHHHHHHhCCCEEEEecCccccCCHHHHHHHhHHHHHHHHHHHhhc-CCCCEEEEcCCc-H----HHHHHHHHcCCCEE
Confidence            345555678999999999765 468876544        45666655 567788888655 2    233333 5788877


Q ss_pred             ee
Q 015894          322 DS  323 (398)
Q Consensus       322 D~  323 (398)
                      +.
T Consensus       257 ~~  258 (338)
T 2eja_A          257 SV  258 (338)
T ss_dssp             EC
T ss_pred             Ee
Confidence            43

>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*

Probab=83.61  E-value=14  Score=41.11  Aligned_cols=79  Identities=16%  Similarity=0.150  Sum_probs=59.2

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEc----cC-----cCc---CCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHH
Q 015894          245 VPPSKVAYVSKQLYDMGCSEISLG----DT-----IGV---GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILA  312 (398)
Q Consensus       245 ~~~~~l~~~a~~l~~~Gad~I~L~----DT-----~G~---~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANala  312 (398)
                      .+++.+.+.++.+.+.|+|.|.|-    -+     .|.   -.|..+.++++.+++... +||.+-.--+..-...-+.+
T Consensus       645 ~~~~~~~~~a~~~~~~g~d~iein~~~P~~~~~~~~G~~~~~~~~~~~~iv~~v~~~~~-~Pv~vK~~~~~~~~~~~a~~  723 (1025)
T 1gte_A          645 YNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQ-IPFFAKLTPNVTDIVSIARA  723 (1025)
T ss_dssp             SCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHCS-SCEEEEECSCSSCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCEEEEECCCCCCCCCCCcccccccCHHHHHHHHHHHHHhhC-CceEEEeCCChHHHHHHHHH
Confidence            368899999999999999988772    11     222   368889999999998864 46777665555445666788


Q ss_pred             HHHhCCCEEeec
Q 015894          313 SLQMGISTVDSS  324 (398)
Q Consensus       313 Al~aGa~~VD~S  324 (398)
                      +.++|++.|.++
T Consensus       724 ~~~~G~d~i~v~  735 (1025)
T 1gte_A          724 AKEGGADGVTAT  735 (1025)
T ss_dssp             HHHHTCSEEEEC
T ss_pred             HHHcCCCEEEEe
Confidence            889999999883

>3m47_A Orotidine 5'-phosphate decarboxylase; orotidine 5'-monophosphate decarboxylase, mutant I218A, LYAS; 1.20A {Methanothermobacter thermautotrophicusdelta H} SCOP: c.1.2.3 PDB: 3li1_A 3m5z_A 3lty_A 3ltp_A* 3g18_A* 3g1d_A* 3g1f_A* 3g1h_A* 3g1a_A* 3lv6_A* 1klz_A* 3g1y_A 3g22_A* 3g24_A* 3p5z_A* 3siz_A* 3sy5_A* 1loq_A* 1lor_A* 1kly_A* ...

Probab=83.58  E-value=5.5  Score=36.54  Aligned_cols=164  Identities=14%  Similarity=0.094  Sum_probs=80.0

Q ss_pred             HHHHHHHhcC--CCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEE---Ee--CC-H-hhHHHHHHcCCCEEEEec
Q 015894          123 ELIKLLVSSG--LAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPV---LT--PN-L-KGFEAAVAAGAKEVAIFA  193 (398)
Q Consensus       123 ~ia~~L~~aG--v~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~---l~--~n-~-~~ie~a~~~Gv~~v~i~~  193 (398)
                      +..+.++++|  ++.+++|...--.+.|      ++++.+++.++..+..   +.  +| . .-++.+.+.|+|.|.+..
T Consensus        26 ~a~~~v~~~~~~v~~~Kvg~~lf~~~G~------~~v~~l~~~~g~~v~lD~Kl~DipnTv~~~~~~~~~~gad~vtvh~   99 (228)
T 3m47_A           26 DALRVTGEVREYIDTVKIGYPLVLSEGM------DIIAEFRKRFGCRIIADFKVADIPETNEKICRATFKAGADAIIVHG   99 (228)
T ss_dssp             HHHHHHHTTTTTCSEEEEEHHHHHHHCT------HHHHHHHHHHCCEEEEEEEECSCHHHHHHHHHHHHHTTCSEEEEES
T ss_pred             HHHHHHHHcCCcccEEEEcHHHHHhcCH------HHHHHHHhcCCCeEEEEEeecccHhHHHHHHHHHHhCCCCEEEEec
Confidence            3444445555  8899998421000111      2344555423332221   11  22 1 246777889999988865


Q ss_pred             cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCc
Q 015894          194 SASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGV  273 (398)
Q Consensus       194 ~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~  273 (398)
                      ....               +.+..+++.+++.|..|.  +....+++.....-.+.+..+++...+.|.+.+..    |.
T Consensus       100 ~~G~---------------~~l~~~~~~~~~~g~~v~--vLt~~s~~~~~~~~~~~~~~~a~~a~~~G~~GvV~----~a  158 (228)
T 3m47_A          100 FPGA---------------DSVRACLNVAEEMGREVF--LLTEMSHPGAEMFIQGAADEIARMGVDLGVKNYVG----PS  158 (228)
T ss_dssp             TTCH---------------HHHHHHHHHHHHHTCEEE--EECCCCSGGGGTTHHHHHHHHHHHHHHTTCCEEEC----CS
T ss_pred             cCCH---------------HHHHHHHHHHHhcCCCeE--EEEeCCCccHHHHHHHHHHHHHHHHHHhCCcEEEE----CC
Confidence            4322               234455667777776543  22222223211111245566788888899887542    22


Q ss_pred             CCHHHHHHHHHHHHhhCCC-CeEEEEeCCccchHH--HHHHHHHHhCCCEEee
Q 015894          274 GTPGTVIPMLEAVLDAVPV-DKLAVHFHDTYGQAL--SNILASLQMGISTVDS  323 (398)
Q Consensus       274 ~~P~~v~~lv~~l~~~~p~-~~l~~H~Hnd~GlA~--ANalaAl~aGa~~VD~  323 (398)
                      -.|.++..    +|+..|. ..+-     +.|-+.  ++. .++++|++++=+
T Consensus       159 t~~~e~~~----ir~~~~~~~~iv-----~PGI~~~g~~p-~~~~aGad~iVv  201 (228)
T 3m47_A          159 TRPERLSR----LREIIGQDSFLI-----SPGVGAQGGDP-GETLRFADAIIV  201 (228)
T ss_dssp             SCHHHHHH----HHHHHCSSSEEE-----ECC----------CGGGTCSEEEE
T ss_pred             CChHHHHH----HHHhcCCCCEEE-----ecCcCcCCCCH-hHHHcCCCEEEE
Confidence            35666554    4444432 1110     111111  245 888999986543

>1i60_A IOLI protein; beta barrel, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Bacillus subtilis} SCOP: c.1.15.4 PDB: 1i6n_A

Probab=83.55  E-value=19  Score=32.26  Aligned_cols=196  Identities=13%  Similarity=0.090  Sum_probs=101.7

Q ss_pred             HHHHHHHHhcCCCEEEEe-cCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe-------CCH-----------hhHHHHH
Q 015894          122 VELIKLLVSSGLAVVEAT-SFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT-------PNL-----------KGFEAAV  182 (398)
Q Consensus       122 ~~ia~~L~~aGv~~IEvG-~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~-------~n~-----------~~ie~a~  182 (398)
                      .+.++.+.++|++.||+. ......+ +.-.+.+++.+.+++ .+.++.++.       .+.           +.++.|.
T Consensus        17 ~~~l~~~~~~G~~~vEl~~~~~~~~~-~~~~~~~~~~~~l~~-~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~   94 (278)
T 1i60_A           17 KLDLELCEKHGYDYIEIRTMDKLPEY-LKDHSLDDLAEYFQT-HHIKPLALNALVFFNNRDEKGHNEIITEFKGMMETCK   94 (278)
T ss_dssp             HHHHHHHHHTTCSEEEEETTTHHHHH-TTSSCHHHHHHHHHT-SSCEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCEEEEccHHHHHHH-hccCCHHHHHHHHHH-cCCCeeeeccccccccCCHHHHHHHHHHHHHHHHHHH
Confidence            345666778999999998 4321101 011345566555553 245544332       111           1245667


Q ss_pred             HcCCCEEEEeccCchHHHhhhcCCCH----HHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHH
Q 015894          183 AAGAKEVAIFASASESFSKSNINCTI----EDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLY  258 (398)
Q Consensus       183 ~~Gv~~v~i~~~~Sd~~~~~~~~~s~----~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~  258 (398)
                      +.|++.|.+.....+      -+.+.    +...+.+.++.++|++.|+.+.  +...-+.. ..-.+++.+.++++.+ 
T Consensus        95 ~lG~~~v~~~~g~~~------~~~~~~~~~~~~~~~l~~l~~~a~~~gv~l~--lEn~~~~~-~~~~~~~~~~~l~~~~-  164 (278)
T 1i60_A           95 TLGVKYVVAVPLVTE------QKIVKEEIKKSSVDVLTELSDIAEPYGVKIA--LEFVGHPQ-CTVNTFEQAYEIVNTV-  164 (278)
T ss_dssp             HHTCCEEEEECCBCS------SCCCHHHHHHHHHHHHHHHHHHHGGGTCEEE--EECCCCTT-BSSCSHHHHHHHHHHH-
T ss_pred             HcCCCEEEEecCCCC------CCCCHHHHHHHHHHHHHHHHHHHHhcCCEEE--EEecCCcc-chhcCHHHHHHHHHHh-
Confidence            789999988543211      02233    3455666777788888898764  32211000 0224667777766544 


Q ss_pred             hCCCCEE-EEccCcCc----CCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCC
Q 015894          259 DMGCSEI-SLGDTIGV----GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPY  333 (398)
Q Consensus       259 ~~Gad~I-~L~DT~G~----~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~  333 (398)
                        +.+.+ ..-|+.=.    ..|.   +    +.+.+.+--.++|+||..+..         .|-. .+     --.+  
T Consensus       165 --~~~~~g~~~D~~h~~~~g~d~~---~----~~~~~~~~i~~vHl~D~~~~~---------~g~~-~~-----~~~~--  218 (278)
T 1i60_A          165 --NRDNVGLVLDSFHFHAMGSNIE---S----LKQADGKKIFIYHIDDTEDFP---------IGFL-TD-----EDRV--  218 (278)
T ss_dssp             --CCTTEEEEEEHHHHHHTTCCHH---H----HHTSCGGGEEEEEECEECCCC---------TTTC-CG-----GGEE--
T ss_pred             --CCCCeeEEEEeEEEeecCCCHH---H----HHhcCcceEEEEEecCCCCCC---------ccch-hh-----ccCC--
Confidence              33322 22354211    1222   2    223333334789999976531         0100 00     0001  


Q ss_pred             CCCCCCCccHHHHHHHHHhCCCC
Q 015894          334 AKGASGNVATEDVVYMLNGLGVR  356 (398)
Q Consensus       334 a~graGNa~lE~vv~~L~~~Gi~  356 (398)
                      .+ +.|..+.+.++..|++.|++
T Consensus       219 ~~-G~G~id~~~~~~~L~~~gy~  240 (278)
T 1i60_A          219 WP-GQGAIDLDAHLSALKEIGFS  240 (278)
T ss_dssp             ST-TSSSSCHHHHHHHHHHTTCC
T ss_pred             CC-CCCCCcHHHHHHHHHHcCCC
Confidence            12 25789999999999987764

>1hjs_A Beta-1,4-galactanase; 4-galactanases, family 53 glycoside hydrolase, thermostability, PH optimum, CLAN GH-A, thermophIle, alkalophIle; HET: NAG EPE; 1.87A {Thielavia heterothallica} SCOP: c.1.8.3 PDB: 1hju_A* 1hjq_A*

Probab=83.46  E-value=13  Score=35.78  Aligned_cols=118  Identities=14%  Similarity=0.080  Sum_probs=68.6

Q ss_pred             hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeee--ecCCCC------CCCC-
Q 015894          176 KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCV--VGCPVE------GMVP-  246 (398)
Q Consensus       176 ~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~--fg~~~~------~r~~-  246 (398)
                      +.++...++|+..||+-+-+.+.     -+.   ..++.+.++++.||++|++|-..+=+.  +..|-.      -..+ 
T Consensus        31 d~~~ilk~~G~N~VRi~~w~~P~-----~g~---~~~~~~~~~~~~A~~~GlkV~ld~Hysd~WadPg~Q~~p~~W~~~~  102 (332)
T 1hjs_A           31 PLENILAANGVNTVRQRVWVNPA-----DGN---YNLDYNIAIAKRAKAAGLGVYIDFHYSDTWADPAHQTMPAGWPSDI  102 (332)
T ss_dssp             CHHHHHHHTTCCEEEEEECSSCT-----TCT---TSHHHHHHHHHHHHHTTCEEEEEECCSSSCCBTTBCBCCTTCCCSH
T ss_pred             cHHHHHHHCCCCEEEEeeeeCCC-----CCc---CCHHHHHHHHHHHHHCCCEEEEEeccCCCcCCccccCCccccccch
Confidence            45677788999999986544432     011   124667788999999999987544211  111210      0111 


Q ss_pred             -------HHHHHHHHHHHHhCC--CCEEEEcc--CcCcC-------CHHHHHHH----HHHHHhhC--CCCeEEEEeCC
Q 015894          247 -------PSKVAYVSKQLYDMG--CSEISLGD--TIGVG-------TPGTVIPM----LEAVLDAV--PVDKLAVHFHD  301 (398)
Q Consensus       247 -------~~~l~~~a~~l~~~G--ad~I~L~D--T~G~~-------~P~~v~~l----v~~l~~~~--p~~~l~~H~Hn  301 (398)
                             .++..++++++.+.|  ++.+.+.-  +.|.+       ....+.++    ++++|+..  |...+.+|..+
T Consensus       103 ~~~~~~~~~yt~~vl~~l~~~g~~~~~v~vGNEi~~g~~w~~g~~~~~~~~~~l~~~~~~avR~~~~~p~~~v~ih~~~  181 (332)
T 1hjs_A          103 DNLSWKLYNYTLDAANKLQNAGIQPTIVSIGNEIRAGLLWPTGRTENWANIARLLHSAAWGIKDSSLSPKPKIMIHLDN  181 (332)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCSEEEESSSGGGEETBTTEETTCHHHHHHHHHHHHHHHHTSCCSSCCEEEEEESC
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCCEEEEeecccccccCcCCCccCHHHHHHHHHHHHHHHHHhccCCCCeEEEEeCC
Confidence                   234445667777766  45665543  11222       23444444    45577777  87788888876

>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A

Probab=83.40  E-value=4.1  Score=39.06  Aligned_cols=83  Identities=12%  Similarity=0.095  Sum_probs=67.8

Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCEEEEccCcC---cCCHHHHHHHHHHHHhhCC-CCeEEEE-eCCccchHHHHHHHHHHh
Q 015894          242 EGMVPPSKVAYVSKQLYDMGCSEISLGDTIG---VGTPGTVIPMLEAVLDAVP-VDKLAVH-FHDTYGQALSNILASLQM  316 (398)
Q Consensus       242 ~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~lv~~l~~~~p-~~~l~~H-~Hnd~GlA~ANalaAl~a  316 (398)
                      .+..|.+.+.++++.+.+.|++.|.++-|+|   .+++++-.++++.+.+... .++|-++ ++|+..-++..+..|-++
T Consensus        27 dg~iD~~~l~~lv~~li~~Gv~gl~v~GtTGE~~~Ls~eEr~~vi~~~~~~~~grvpViaGvg~~st~~ai~la~~A~~~  106 (306)
T 1o5k_A           27 NGELDLESYERLVRYQLENGVNALIVLGTTGESPTVNEDEREKLVSRTLEIVDGKIPVIVGAGTNSTEKTLKLVKQAEKL  106 (306)
T ss_dssp             TTEECHHHHHHHHHHHHHTTCCEEEESSGGGTGGGCCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHHHHcCCCEEEeCccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEcCCCccHHHHHHHHHHHHhc
Confidence            3568899999999999999999999999988   5677888888888887653 3555554 567888899999999999


Q ss_pred             CCCEEeec
Q 015894          317 GISTVDSS  324 (398)
Q Consensus       317 Ga~~VD~S  324 (398)
                      ||+.+=+.
T Consensus       107 Gadavlv~  114 (306)
T 1o5k_A          107 GANGVLVV  114 (306)
T ss_dssp             TCSEEEEE
T ss_pred             CCCEEEEC
Confidence            99977554

>3vii_A Beta-glucosidase; cellulases, glycosyl hydrolase, hydrolase; HET: BTB; 0.97A {Neotermes koshunensis} PDB: 3ahz_A* 3vif_A* 3vih_A 3vig_A* 3vim_A* 3ai0_A* 3vin_A* 3vio_A* 3vip_A* 3vij_A* 3vik_A* 3vil_A*

Probab=83.38  E-value=2.5  Score=43.49  Aligned_cols=84  Identities=12%  Similarity=0.056  Sum_probs=62.5

Q ss_pred             HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCC--------CCCCC
Q 015894          175 LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPV--------EGMVP  246 (398)
Q Consensus       175 ~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~--------~~r~~  246 (398)
                      .+||+...+.|++..|+.++=|-++.+-..+.-.++.|+.+.++|+.+++.|++..++|.. |..|.        ..|-.
T Consensus        69 ~EDi~Lm~elG~~~yRfSIsWsRI~P~G~~g~~N~~Gl~fY~~lId~Ll~~GIeP~VTL~H-~DlP~~L~~~GGW~nr~~  147 (487)
T 3vii_A           69 KEDVKILKELGAQVYRFSISWARVLPEGHDNIVNQDGIDYYNNLINELLANGIEPMVTMYH-WDLPQALQDLGGWPNLVL  147 (487)
T ss_dssp             HHHHHHHHHHTCSEEEEECCHHHHSTTSSTTCCCHHHHHHHHHHHHHHHHTTCEEEEEEES-SCCBHHHHTTTSTTSTHH
T ss_pred             HHHHHHHHHcCCCEEEeeCCHHHcCcCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEEec-CCCcHHHHHcCCCCCHHH
Confidence            4799999999999999998877666542134446789999999999999999999988886 44442        22334


Q ss_pred             HHHHHHHHHHHHh
Q 015894          247 PSKVAYVSKQLYD  259 (398)
Q Consensus       247 ~~~l~~~a~~l~~  259 (398)
                      ++.+.++|+.+.+
T Consensus       148 v~~F~~YA~~~f~  160 (487)
T 3vii_A          148 AKYSENYARVLFK  160 (487)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            4566666665543

>3vav_A 3-methyl-2-oxobutanoate hydroxymethyltransferase; structural genomics, seattle structural genomics center for infectious disease; 1.80A {Burkholderia thailandensis} SCOP: c.1.12.8 PDB: 3ez4_A

Probab=83.36  E-value=16  Score=34.70  Aligned_cols=119  Identities=13%  Similarity=0.105  Sum_probs=72.5

Q ss_pred             CCcEEEEe-CCHhhHHHHHHcCCCEEEEeccCchHH--HhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCC
Q 015894          165 GARFPVLT-PNLKGFEAAVAAGAKEVAIFASASESF--SKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPV  241 (398)
Q Consensus       165 ~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~~~Sd~~--~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~  241 (398)
                      +-++.+++ .+..-.+.+-++|+|.+-+-.++.-..  .......|.++.+...+.+.+.++  ...|.+      ..|.
T Consensus        28 g~~i~m~tayDa~sA~l~e~aG~d~ilvGdSl~~~~lG~~dt~~vtldem~~h~~aV~r~~~--~~~vva------D~pf   99 (275)
T 3vav_A           28 GEKIAMLTCYDASFAALLDRANVDVQLIGDSLGNVLQGQTTTLPVTLDDIAYHTACVARAQP--RALIVA------DLPF   99 (275)
T ss_dssp             TCCEEEEECCSHHHHHHHHHTTCSEEEECTTHHHHTTCCSSSTTCCHHHHHHHHHHHHHTCC--SSEEEE------ECCT
T ss_pred             CCcEEEEeCcCHHHHHHHHHcCCCEEEECcHHHHHHcCCCCCCccCHHHHHHHHHHHHhcCC--CCCEEE------ecCC
Confidence            45666665 355556667789999996554443211  011124577888877765555321  123332      2344


Q ss_pred             CCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEe
Q 015894          242 EGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHF  299 (398)
Q Consensus       242 ~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~  299 (398)
                      .+-.+++...+-+.++.+.|++.|.|-|..      ...+.|+++.+.  ++|+--|.
T Consensus       100 gsY~s~~~a~~~a~rl~kaGa~aVklEdg~------~~~~~i~~l~~~--GIpv~gHl  149 (275)
T 3vav_A          100 GTYGTPADAFASAVKLMRAGAQMVKFEGGE------WLAETVRFLVER--AVPVCAHV  149 (275)
T ss_dssp             TSCSSHHHHHHHHHHHHHTTCSEEEEECCG------GGHHHHHHHHHT--TCCEEEEE
T ss_pred             CCCCCHHHHHHHHHHHHHcCCCEEEECCch------hHHHHHHHHHHC--CCCEEEec
Confidence            322688888888888888899999999973      456677777764  23444454

>1xim_A D-xylose isomerase; isomerase(intramolecular oxidoreductse); HET: XYL; 2.20A {Actinoplanes missouriensis} SCOP: c.1.15.3 PDB: 4xim_A 5xim_A* 6xim_A* 7xim_A 8xim_A* 9xim_A* 3xin_A 2xim_A* 5xin_A* 1xin_A* 1bhw_A* 2xin_A* 3xim_A*

Probab=83.34  E-value=4.8  Score=39.56  Aligned_cols=209  Identities=12%  Similarity=0.079  Sum_probs=0.0

Q ss_pred             HHHHHHHHhcCCCEEEEe----cCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCCH----------------------
Q 015894          122 VELIKLLVSSGLAVVEAT----SFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNL----------------------  175 (398)
Q Consensus       122 ~~ia~~L~~aGv~~IEvG----~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n~----------------------  175 (398)
                      .+.++.+.++|++.||+.    ++........-.+.+++.+.+++ .++++.++..+.                      
T Consensus        36 ~e~l~~aa~~G~~~VEl~~~~l~p~~~~~~~~~~~~~~l~~~l~~-~GL~i~~~~~~~f~~p~~~~g~l~spd~~~r~~~  114 (393)
T 1xim_A           36 VEAVHKLAEIGAYGITFHDDDLVPFGSDAQTRDGIIAGFKKALDE-TGLIVPMVTTNLFTHPVFKDGGFTSNDRSVRRYA  114 (393)
T ss_dssp             HHHHHHHHHHTCSEEECBHHHHSCTTCCHHHHHHHHHHHHHHHHH-HTCBCCEEECCCSSSGGGTTCSTTCSSHHHHHHH
T ss_pred             HHHHHHHHHhCCCEEEeecccCCCccccccccHHHHHHHHHHHHH-hCCEEEEEecCCcCCcccccCCCCCCCHHHHHHH


Q ss_pred             -----hhHHHHHHcCCCEEEEeccC--chHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCC--CCCCCC
Q 015894          176 -----KGFEAAVAAGAKEVAIFASA--SESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCP--VEGMVP  246 (398)
Q Consensus       176 -----~~ie~a~~~Gv~~v~i~~~~--Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~--~~~r~~  246 (398)
                           +.++.|.+.|++.|.+....  .+..........++...+.+.++.++|++.|+.|+..+...-..|  ...-.+
T Consensus       115 i~~~~~~i~~A~~LGa~~vv~~~G~~g~~~~~~~~~~~~~~~~~e~L~~l~~~A~~~g~gv~l~lE~~~~~~~~~~~~~t  194 (393)
T 1xim_A          115 IRKVLRQMDLGAELGAKTLVLWGGREGAEYDSAKDVSAALDRYREALNLLAQYSEDRGYGLRFAIEPKPNEPRGDILLPT  194 (393)
T ss_dssp             HHHHHHHHHHHHHHTCCEEEEECTTSEESSGGGCCHHHHHHHHHHHHHHHHHHHHHHTCCCEEEEECCSSSSSSEESSCS
T ss_pred             HHHHHHHHHHHHHhCCCEEEECCCCCCCcCCccCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEecCCCCCCCCCcCCC


Q ss_pred             HHHHHHHHHHHHhCCCCE--EEEccCcCc-CCHHHHHHHHHHHH--hhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894          247 PSKVAYVSKQLYDMGCSE--ISLGDTIGV-GTPGTVIPMLEAVL--DAVPVDKLAVHFHDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       247 ~~~l~~~a~~l~~~Gad~--I~L~DT~G~-~~P~~v~~lv~~l~--~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                      .+...++++   +.|.+.  -..-|+.=. ..-..+.+.++.+.  ..+    .++|++|..|                 
T Consensus       195 ~~~~~~ll~---~v~~~~~vgl~lD~gH~~~~g~d~~~~l~~~~~~~~i----~~vHl~D~~~-----------------  250 (393)
T 1xim_A          195 AGHAIAFVQ---ELERPELFGINPETGHEQMSNLNFTQGIAQALWHKKL----FHIDLNGQHG-----------------  250 (393)
T ss_dssp             HHHHHHHHT---TSSSGGGEEECCBHHHHHTTTCCHHHHHHHHHHHTCB----CCCEECBCCS-----------------
T ss_pred             HHHHHHHHH---HhCCccceEEEEccCCccccCCCHHHHHHHhhhcCCE----EEEEeCCCCC-----------------


Q ss_pred             eec-cccCCCCCCCCCCCCCcc-HHHHHHHHHhC-----CCCCccChH
Q 015894          322 DSS-VSGLGGCPYAKGASGNVA-TEDVVYMLNGL-----GVRTNVDIR  362 (398)
Q Consensus       322 D~S-v~GlGecp~a~graGNa~-lE~vv~~L~~~-----Gi~t~iDl~  362 (398)
                       .. -.+++.      +.++.. +..++..|++.     |++-.+-++
T Consensus       251 -~~~d~~l~~------G~~d~~~i~~~~~~L~~~~~~~~Gy~G~i~lE  291 (393)
T 1xim_A          251 -PKFDQDLVF------GHGDLLNAFSLVDLLENGPDGAPAYDGPRHFD  291 (393)
T ss_dssp             -SSSCCCBCT------TSSSHHHHHHHHHHHHSCGGGSCSCCSCEEEC
T ss_pred             -ccccCCCCC------CCcCHHHHHHHHHHHHhccccccCCCCCeEEE

>3d0c_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI-2, structural genomics; 1.90A {Oceanobacillus iheyensis HTE831}

Probab=83.31  E-value=13  Score=35.70  Aligned_cols=62  Identities=6%  Similarity=0.024  Sum_probs=37.4

Q ss_pred             HHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHh-CCCCEEEEccCcCcCCHHHHHHHH
Q 015894          216 RDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYD-MGCSEISLGDTIGVGTPGTVIPML  283 (398)
Q Consensus       216 ~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~-~Gad~I~L~DT~G~~~P~~v~~lv  283 (398)
                      .+.++.|++.|.....     ...|.-.+.+.+.+.+..+.+.+ .+...+..- ..|.++|+.+.++.
T Consensus        96 i~la~~A~~~Gadavl-----v~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn-~tg~l~~~~~~~La  158 (314)
T 3d0c_A           96 IELGKSAIDSGADCVM-----IHQPVHPYITDAGAVEYYRNIIEALDAPSIIYF-KDAHLSDDVIKELA  158 (314)
T ss_dssp             HHHHHHHHHTTCSEEE-----ECCCCCSCCCHHHHHHHHHHHHHHSSSCEEEEE-CCTTSCTHHHHHHT
T ss_pred             HHHHHHHHHcCCCEEE-----ECCCCCCCCCHHHHHHHHHHHHHhCCCCEEEEe-CCCCcCHHHHHHHH
Confidence            3556778888887531     11455455677777777666655 355544333 77776666666653

>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*

Probab=83.31  E-value=16  Score=34.42  Aligned_cols=79  Identities=14%  Similarity=0.095  Sum_probs=54.6

Q ss_pred             CCHHHHHHHHHHHHhCCCC-EEEEc----cCcC---c-CCHHHHHHHHHHHHhhCCCCeEEEEeCCccc--hHHHHHHHH
Q 015894          245 VPPSKVAYVSKQLYDMGCS-EISLG----DTIG---V-GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYG--QALSNILAS  313 (398)
Q Consensus       245 ~~~~~l~~~a~~l~~~Gad-~I~L~----DT~G---~-~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~G--lA~ANalaA  313 (398)
                      .+++.+.+.++.+.++|+| .|.|-    -+-|   + ..|+.+.++++++++... .||.+-.--+..  -...-+..+
T Consensus       103 ~~~~~~~~~a~~~~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~~-~Pv~vKi~~~~~~~~~~~~a~~~  181 (311)
T 1jub_A          103 MSAAENIAMLKKIQESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFFT-KPLGVKLPPYFDLVHFDIMAEIL  181 (311)
T ss_dssp             SSHHHHHHHHHHHHHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTCC-SCEEEEECCCCSHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhcC-CCEEEEECCCCCHHHHHHHHHHH
Confidence            3688999999999999999 77661    1111   2 378899999999998763 467665543332  122225566


Q ss_pred             HHhCCCEEeec
Q 015894          314 LQMGISTVDSS  324 (398)
Q Consensus       314 l~aGa~~VD~S  324 (398)
                      .++|++.|.++
T Consensus       182 ~~~G~d~i~v~  192 (311)
T 1jub_A          182 NQFPLTYVNSV  192 (311)
T ss_dssp             TTSCCCEEEEC
T ss_pred             HHcCCcEEEec
Confidence            78899988765

>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase, [4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM MD0; 1.50A {Methanosarcina barkeri}

Probab=83.29  E-value=8  Score=37.11  Aligned_cols=121  Identities=14%  Similarity=0.135  Sum_probs=72.2

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEccCcCcCCH------HHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHH-HhC
Q 015894          245 VPPSKVAYVSKQLYDMGCSEISLGDTIGVGTP------GTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASL-QMG  317 (398)
Q Consensus       245 ~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P------~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl-~aG  317 (398)
                      .+++.+.+.++.+.+.|+..|.|  +.|. .|      ..+.++++.+++.++ +.+  |+  +.|+-..-.+..+ ++|
T Consensus        91 ls~eei~~~~~~~~~~G~~~i~l--~gGe-~p~~~~~~~~~~~l~~~ik~~~~-i~i--~~--s~g~~~~e~l~~L~~aG  162 (350)
T 3t7v_A           91 LTMEEIKETCKTLKGAGFHMVDL--TMGE-DPYYYEDPNRFVELVQIVKEELG-LPI--MI--SPGLMDNATLLKAREKG  162 (350)
T ss_dssp             CCHHHHHHHHHHHTTSCCSEEEE--EECC-CHHHHHSTHHHHHHHHHHHHHHC-SCE--EE--ECSSCCHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEE--eeCC-CCccccCHHHHHHHHHHHHhhcC-ceE--EE--eCCCCCHHHHHHHHHcC
Confidence            58899999999999999999999  3343 34      556889999987764 333  43  3455445555555 589


Q ss_pred             CCEEeeccccCCCCCCCCCCCCCccHHHHHHHHH---hCCCCC------c--cChHHHHHHHHHHHHH
Q 015894          318 ISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLN---GLGVRT------N--VDIRKLMIAGDFICKH  374 (398)
Q Consensus       318 a~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~---~~Gi~t------~--iDl~~L~~~~~~v~~~  374 (398)
                      ++.+..++-..-.=-|..-+. .-+.++.+..++   +.|+.+      |  -+.+.+.+..+.+.+.
T Consensus       163 ~~~i~i~lEt~~~~~~~~i~~-~~~~~~~l~~i~~a~~~Gi~v~~~~i~Glget~e~~~~~l~~l~~l  229 (350)
T 3t7v_A          163 ANFLALYQETYDTELYRKLRV-GQSFDGRVNARRFAKQQGYCVEDGILTGVGNDIESTILSLRGMSTN  229 (350)
T ss_dssp             EEEEECCCBCSCHHHHHHHST-TCCHHHHHHHHHHHHHHTCEEEEEEEESSSCCHHHHHHHHHHHHHT
T ss_pred             CCEEEEeeecCCHHHHHHhCC-CCCHHHHHHHHHHHHHcCCeEccceEeecCCCHHHHHHHHHHHHhC
Confidence            998886665542100000001 134566555554   456542      2  2335566666665553

>3kru_A NADH:flavin oxidoreductase/NADH oxidase; homotetramer, dimer of dimers, TIM barrel, thermophilic, OLD enzyme; HET: FMN; 1.60A {Thermoanaerobacter pseudethanolicus AT} SCOP: c.1.4.0 PDB: 3krz_A*

Probab=83.28  E-value=14  Score=35.94  Aligned_cols=122  Identities=14%  Similarity=0.143  Sum_probs=77.2

Q ss_pred             CCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecC-----------CCC------C----CCCH-------HHHHHHHHH
Q 015894          205 NCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGC-----------PVE------G----MVPP-------SKVAYVSKQ  256 (398)
Q Consensus       205 ~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~-----------~~~------~----r~~~-------~~l~~~a~~  256 (398)
                      +...++.++..+++++.+++.|-.+...|... |-           |-.      .    ..+.       +.+.+.++.
T Consensus        73 gi~~d~~i~~~~~~~~~vh~~G~~i~~QL~H~-Gr~~~~~g~~~~apS~i~~~~~~~~p~~mt~~eI~~ii~~f~~AA~~  151 (343)
T 3kru_A           73 GIWNDEQVKELKKIVDICKANGAVMGIQLAHA-GRKCNISYEDVVGPSPIKAGDRYKLPRELSVEEIKSIVKAFGEAAKR  151 (343)
T ss_dssp             BCSSHHHHHHHHHHHHHHHHTTCEEEEEEECC-GGGCCCTTSCCEESSSCCSSTTSCCCEECCHHHHHHHHHHHHHHHHH
T ss_pred             cccCHHHHHHHHHHHHHHhcCCceEeeehhhc-cCccCcchhhccCCCcCCCCccccCchhcCHHHHHHHHHHHHHHHhh
Confidence            34445678888999999999999887777653 10           000      0    1222       344556677


Q ss_pred             HHhCCCCEEEEc-------------------cCcCcCC---HHHHHHHHHHHHhhCC-CCeEEEEeCCc----cchHHHH
Q 015894          257 LYDMGCSEISLG-------------------DTIGVGT---PGTVIPMLEAVLDAVP-VDKLAVHFHDT----YGQALSN  309 (398)
Q Consensus       257 l~~~Gad~I~L~-------------------DT~G~~~---P~~v~~lv~~l~~~~p-~~~l~~H~Hnd----~GlA~AN  309 (398)
                      +.++|.|.|-|-                   |-.|...   +.-+.++|+++|+.++ +.+|++-..-+    -|..+..
T Consensus       152 a~~aGfDgVEih~ahGYLl~qFlsp~~N~R~D~yGGslenR~rf~~eiv~aVr~avg~d~pv~vRls~~~~~~~g~~~~~  231 (343)
T 3kru_A          152 ANLAGYDVVEIHAAHGYLIHEFLSPLSNKRKDEYGNSIENRARFLIEVIDEVRKNWPENKPIFVRVSADDYMEGGINIDM  231 (343)
T ss_dssp             HHHHTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHTSCTTSCEEEEEECCCSSTTSCCHHH
T ss_pred             ccccCCceEEEecccchhHHHhhcccccccchhhccchHhHHHHHHHHHHHHHhcCCccCCeEEEeechhhhccCccHHH
Confidence            778999988775                   5566432   3556889999999985 55788765532    1222222


Q ss_pred             ----HHHHHHhCCCEEeeccccC
Q 015894          310 ----ILASLQMGISTVDSSVSGL  328 (398)
Q Consensus       310 ----alaAl~aGa~~VD~Sv~Gl  328 (398)
                          +...-++ ++.|+++..+.
T Consensus       232 ~~~~a~~l~~~-vd~i~vs~g~~  253 (343)
T 3kru_A          232 MVEYINMIKDK-VDLIDVSSGGL  253 (343)
T ss_dssp             HHHHHHHHTTT-CSEEEEECCCS
T ss_pred             HHHHHHHhhcc-ccEEeccCCce
Confidence                2222346 99999986544

>3p6l_A Sugar phosphate isomerase/epimerase; TIM barrel, structural genomics, joint center for structural genomics, JCSG; HET: CIT; 1.85A {Parabacteroides distasonis}

Probab=83.25  E-value=25  Score=31.52  Aligned_cols=110  Identities=15%  Similarity=0.094  Sum_probs=67.4

Q ss_pred             hhHHHHHHcCCCEEEEeccCch--HHHhh--hcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHH
Q 015894          176 KGFEAAVAAGAKEVAIFASASE--SFSKS--NINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVA  251 (398)
Q Consensus       176 ~~ie~a~~~Gv~~v~i~~~~Sd--~~~~~--~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~  251 (398)
                      +-++.+.++|.+.|-++..-..  .|...  ....+.    +.+.++.+.+++.|+.+.. +...+   .   ...+.+.
T Consensus        26 ~~l~~~~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~l~~~gl~i~~-~~~~~---~---~~~~~~~   94 (262)
T 3p6l_A           26 EALDKTQELGLKYIEIYPGHKLGGKWGDKVFDFNLDA----QTQKEIKELAASKGIKIVG-TGVYV---A---EKSSDWE   94 (262)
T ss_dssp             HHHHHHHHTTCCEEEECTTEECCGGGTTCEESTTCCH----HHHHHHHHHHHHTTCEEEE-EEEEC---C---SSTTHHH
T ss_pred             HHHHHHHHcCCCEEeecCCcccccccccccccccCCH----HHHHHHHHHHHHcCCeEEE-EeccC---C---ccHHHHH
Confidence            3477889999999998753110  00000  011222    2344566778899998753 22111   1   2456788


Q ss_pred             HHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCcc
Q 015894          252 YVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTY  303 (398)
Q Consensus       252 ~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~  303 (398)
                      +.++.+.++|++.|.+.-  |   +.....+.....+ . ++.|.+|.|...
T Consensus        95 ~~i~~A~~lGa~~v~~~~--~---~~~~~~l~~~a~~-~-gv~l~~En~~~~  139 (262)
T 3p6l_A           95 KMFKFAKAMDLEFITCEP--A---LSDWDLVEKLSKQ-Y-NIKISVHNHPQP  139 (262)
T ss_dssp             HHHHHHHHTTCSEEEECC--C---GGGHHHHHHHHHH-H-TCEEEEECCSSS
T ss_pred             HHHHHHHHcCCCEEEecC--C---HHHHHHHHHHHHH-h-CCEEEEEeCCCc
Confidence            889999999999998862  2   3555555555443 3 367999999763

>4djd_C C/Fe-SP, corrinoid/iron-sulfur protein large subunit; TIM barrel, rossmann fold, B12-dependent methyltransferase; HET: B12; 2.38A {Moorella thermoacetica} PDB: 4dje_C* 4djf_C*

Probab=83.19  E-value=15  Score=37.20  Aligned_cols=143  Identities=13%  Similarity=0.145  Sum_probs=88.3

Q ss_pred             CCHHHHHHHHHhc---cCCcEEEEeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC
Q 015894          151 ADAKDVMAAIQNV---EGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSI  227 (398)
Q Consensus       151 ~D~~~v~~~i~~~---~~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~  227 (398)
                      .|++.+...++.+   .++.++..+.+.+-++++++.+.+...+..++++               +++.++...|+++|.
T Consensus       138 ~dpe~~~~vVk~V~e~~dvPL~IDS~dpevleaALea~a~~~plI~sat~---------------dn~e~m~~lAa~y~~  202 (446)
T 4djd_C          138 DDPAAFKAAVASVAAATQLNLVLMADDPDVLKEALAGVADRKPLLYAATG---------------ANYEAMTALAKENNC  202 (446)
T ss_dssp             SSTHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHGGGGGGCCEEEEECT---------------TTHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHhCCCCEEEecCCHHHHHHHHHhhcCcCCeeEecch---------------hhHHHHHHHHHHcCC
Confidence            3556666666643   3566666677888899999988776555555442               345667788899999


Q ss_pred             cEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCc-CcCCHHHHHHHHHHH--Hhh-----CCCCeEEEEe
Q 015894          228 PVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTI-GVGTPGTVIPMLEAV--LDA-----VPVDKLAVHF  299 (398)
Q Consensus       228 ~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~-G~~~P~~v~~lv~~l--~~~-----~p~~~l~~H~  299 (398)
                      .+.+  +    .+     +.+.+.++.+.+.++|++.|.|==.. |...-.+....++.+  ++.     +|.  |.+-.
T Consensus       203 pVi~--~----~~-----dl~~lkelv~~a~~~GI~~IvLDPG~~g~~~t~~~~~~iRr~AL~~~d~~LgyPv--i~~~s  269 (446)
T 4djd_C          203 PLAV--Y----GN-----GLEELAELVDKIVALGHKQLVLDPGARETSRAIADFTQIRRLAIKKRFRSFGYPI--IALTT  269 (446)
T ss_dssp             CEEE--E----CS-----SHHHHHHHHHHHHHTTCCCEEEECCCCSHHHHHHHHHHHHHHHHHSCCGGGCSCB--EEECC
T ss_pred             cEEE--E----ec-----cHHHHHHHHHHHHHCCCCcEEECCCchhHHHHHHHHHHHHHHhhhccCcccCCCE--EeccC
Confidence            8752  2    11     67899999999999999877553333 432222222222322  111     342  55556


Q ss_pred             CCccchHHHHHHHHHHhCCCEE
Q 015894          300 HDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       300 Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                      ..|.-+-...+...+..|+++|
T Consensus       270 r~d~~~E~t~A~~~i~kga~Iv  291 (446)
T 4djd_C          270 AANPLDEVLQAVNYVTKYASLV  291 (446)
T ss_dssp             CSSHHHHHHHHHHHHHTTCSEE
T ss_pred             CccHHHHHHHHHHHHHcCCeEE
Confidence            6564444444456677888765

>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A

Probab=83.05  E-value=2.2  Score=37.82  Aligned_cols=68  Identities=7%  Similarity=0.035  Sum_probs=50.6

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCC-CCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894          245 VPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVP-VDKLAVHFHDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       245 ~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p-~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                      .+++...++++.+.+.|++.|.+.=.    +| ...+.++.+|+.+| +..|++....|.    ..+..|+++||++|
T Consensus        19 ~~~~~~~~~~~~~~~~G~~~iev~~~----~~-~~~~~i~~ir~~~~~~~~ig~~~v~~~----~~~~~a~~~Gad~i   87 (205)
T 1wa3_A           19 NSVEEAKEKALAVFEGGVHLIEITFT----VP-DADTVIKELSFLKEKGAIIGAGTVTSV----EQCRKAVESGAEFI   87 (205)
T ss_dssp             SSHHHHHHHHHHHHHTTCCEEEEETT----ST-THHHHHHHTHHHHHTTCEEEEESCCSH----HHHHHHHHHTCSEE
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEeCC----Ch-hHHHHHHHHHHHCCCCcEEEecccCCH----HHHHHHHHcCCCEE
Confidence            46889999999999999999976422    34 33556888888876 667888653333    34688889999999

>2hsa_B 12-oxophytodienoate reductase 3; alpha beta 8 barrel, flavoprotein, jasmonate biosynthesis, oxidoreductase; HET: FMN; 1.50A {Solanum lycopersicum} PDB: 2hs6_A* 3hgs_A* 2hs8_A* 3hgo_A* 1q45_A* 2g5w_A* 2q3o_A*

Probab=82.92  E-value=15  Score=36.51  Aligned_cols=120  Identities=13%  Similarity=0.153  Sum_probs=77.6

Q ss_pred             CHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecC---------------CCC-----------------CCCCH-------
Q 015894          207 TIEDSLIRYRDVALAARELSIPVRGYLSCVVGC---------------PVE-----------------GMVPP-------  247 (398)
Q Consensus       207 s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~---------------~~~-----------------~r~~~-------  247 (398)
                      ..++.++..+.+++.+++.|-.+.+.|... |-               |-.                 ....|       
T Consensus        87 ~~d~~i~~~k~l~~avh~~G~~i~~QL~H~-Gr~~~~~~~~~g~~~~apS~v~~~~~~~~~~~~g~~~~~~~p~~mt~~e  165 (402)
T 2hsa_B           87 FTKEQVREWKKIVDVVHAKGAVIFCQLWHV-GRASHEVYQPAGAAPISSTEKPISNRWRILMPDGTHGIYPKPRAIGTYE  165 (402)
T ss_dssp             SSHHHHHHHHHHHHHHHHTTCEEEEEEECC-TTSCCGGGCTTCCCCEESCSCCCCTTCEEECTTSCEEECCCCEECCGGG
T ss_pred             CCHHHHHHHHHHHHHHHhcCCeEEEEeccC-CcccccccccCCCccccCCCcccccccccccccccccCCCCCccCCHHH
Confidence            345667778888889999998887777641 10               000                 00123       


Q ss_pred             -----HHHHHHHHHHHhCCCCEEEE-------------------ccCcCcCC---HHHHHHHHHHHHhhCCCCeEEEEeC
Q 015894          248 -----SKVAYVSKQLYDMGCSEISL-------------------GDTIGVGT---PGTVIPMLEAVLDAVPVDKLAVHFH  300 (398)
Q Consensus       248 -----~~l~~~a~~l~~~Gad~I~L-------------------~DT~G~~~---P~~v~~lv~~l~~~~p~~~l~~H~H  300 (398)
                           +.+.+.|+.+.++|.|.|-|                   .|-.|...   +.-+.++|+++|+.++..+|.+-..
T Consensus       166 I~~ii~~f~~AA~~a~~AGfDgVEIh~ahGYLl~QFLsp~~N~RtD~yGGslenR~rf~~Eiv~aVr~avg~~~V~vRls  245 (402)
T 2hsa_B          166 ISQVVEDYRRSALNAIEAGFDGIEIHGAHGYLIDQFLKDGINDRTDEYGGSLANRCKFITQVVQAVVSAIGADRVGVRVS  245 (402)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHHcCCCEEEECCccchHHHhccCCccCccCCccCcChhhhhHHHHHHHHHHHHHhCCCcEEEEec
Confidence                 56777888889999998776                   23344332   4558899999999886337888755


Q ss_pred             Cc-------cch----HHHHHHHHHHhC------CCEEeecccc
Q 015894          301 DT-------YGQ----ALSNILASLQMG------ISTVDSSVSG  327 (398)
Q Consensus       301 nd-------~Gl----A~ANalaAl~aG------a~~VD~Sv~G  327 (398)
                      -+       .|.    ++.-+.+.-++|      ++.|+++-..
T Consensus       246 ~~~~~~g~~~~~~~~~~~~la~~le~~G~~gg~~vd~i~v~~~~  289 (402)
T 2hsa_B          246 PAIDHLDAMDSNPLSLGLAVVERLNKIQLHSGSKLAYLHVTQPR  289 (402)
T ss_dssp             SSCCSTTCCCSCHHHHHHHHHHHHHHHHHHHTSCCSEEEEECCC
T ss_pred             cccccCCCCCCCCHHHHHHHHHHHHhcCCccCCceEEEEEecCc
Confidence            32       122    333334445688      9999997543

>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}

Probab=82.91  E-value=3.7  Score=39.13  Aligned_cols=82  Identities=15%  Similarity=0.026  Sum_probs=67.4

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcC---cCCHHHHHHHHHHHHhhCC-CCeEEEE-eCCccchHHHHHHHHHHhC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIG---VGTPGTVIPMLEAVLDAVP-VDKLAVH-FHDTYGQALSNILASLQMG  317 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~lv~~l~~~~p-~~~l~~H-~Hnd~GlA~ANalaAl~aG  317 (398)
                      +..|.+.+.++++.+.+.|++.|.++-|+|   .+++++-.++++.+.+... .+++-++ ++|+..-++..+..|-++|
T Consensus        16 g~iD~~~l~~lv~~li~~Gv~gi~v~GttGE~~~Ls~~Er~~v~~~~~~~~~grvpviaGvg~~~t~~ai~la~~A~~~G   95 (297)
T 2rfg_A           16 GQVDEKALAGLVDWQIKHGAHGLVPVGTTGESPTLTEEEHKRVVALVAEQAQGRVPVIAGAGSNNPVEAVRYAQHAQQAG   95 (297)
T ss_dssp             TEECHHHHHHHHHHHHHTTCSEEECSSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHHT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccchhhCCHHHHHHHHHHHHHHhCCCCeEEEccCCCCHHHHHHHHHHHHhcC
Confidence            568899999999999999999999999988   5677888888888887653 3455553 5678888999999999999


Q ss_pred             CCEEeec
Q 015894          318 ISTVDSS  324 (398)
Q Consensus       318 a~~VD~S  324 (398)
                      |+.+=+.
T Consensus        96 adavlv~  102 (297)
T 2rfg_A           96 ADAVLCV  102 (297)
T ss_dssp             CSEEEEC
T ss_pred             CCEEEEc
Confidence            9977654

>3b8i_A PA4872 oxaloacetate decarboxylase; alpha/beta barrel, helix swapping, lyase; 1.90A {Pseudomonas aeruginosa}

Probab=82.69  E-value=15  Score=34.98  Aligned_cols=186  Identities=13%  Similarity=0.152  Sum_probs=105.8

Q ss_pred             HHHHHHHhcCCCEEEEecC-C------CCCcccCCCCHHHHHHHHHhcc-CCcEEEEe--C----CH----hhHHHHHHc
Q 015894          123 ELIKLLVSSGLAVVEATSF-V------SPKWVPQLADAKDVMAAIQNVE-GARFPVLT--P----NL----KGFEAAVAA  184 (398)
Q Consensus       123 ~ia~~L~~aGv~~IEvG~~-~------~~~~~p~~~D~~~v~~~i~~~~-~~~l~~l~--~----n~----~~ie~a~~~  184 (398)
                      --++.++++|++.|=+|.. .      .|+..  .-+.++++..++.+. .+.+.+++  +    +.    +-+++..++
T Consensus        32 ~sA~i~e~aGf~ai~vs~s~~a~~~lG~pD~~--~vt~~em~~~~~~I~r~~~~PviaD~d~Gyg~~~~~~~~v~~l~~a  109 (287)
T 3b8i_A           32 MSARIAADLGFECGILGGSVASLQVLAAPDFA--LITLSEFVEQATRIGRVARLPVIADADHGYGNALNVMRTVVELERA  109 (287)
T ss_dssp             HHHHHHHHTTCSCEEECHHHHHHHHHSCCSSS--CSCHHHHHHHHHHHHTTCSSCEEEECTTCSSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEeCcHHHHHHhcCCCCCC--CCCHHHHHHHHHHHHhcCCCCEEEECCCCCCCHHHHHHHHHHHHHh
Confidence            3466778899999999854 2      13322  235677777776543 23333343  2    22    234566789


Q ss_pred             CCCEEEEeccCchH---HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCC
Q 015894          185 GAKEVAIFASASES---FSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMG  261 (398)
Q Consensus       185 Gv~~v~i~~~~Sd~---~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~G  261 (398)
                      |+.-|.|-..+.+-   |...+ =.+.++..++++.+++....-++.+.+--       ++.....+...+-++.+.++|
T Consensus       110 Ga~gv~iED~~~pKrcgh~~gk-l~~~~e~~~~I~aa~~a~~~~~~~i~aRt-------daa~~gl~~ai~Ra~ay~eAG  181 (287)
T 3b8i_A          110 GIAALTIEDTLLPAQFGRKSTD-LICVEEGVGKIRAALEARVDPALTIIART-------NAELIDVDAVIQRTLAYQEAG  181 (287)
T ss_dssp             TCSEEEEECBCCSCCTTTCTTC-BCCHHHHHHHHHHHHHHCCSTTSEEEEEE-------ETTTSCHHHHHHHHHHHHHTT
T ss_pred             CCeEEEEcCCCCccccCCCCCC-ccCHHHHHHHHHHHHHcCCCCCcEEEEec-------hhhhcCHHHHHHHHHHHHHcC
Confidence            99999998876421   11222 24667777776555554433344444211       111234577888888999999


Q ss_pred             CCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccC
Q 015894          262 CSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGL  328 (398)
Q Consensus       262 ad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~Gl  328 (398)
                      ||.|.+.   |.-+++.+.++.+.+.  .|   +-+--....++  -+.-.--++|+++|-.....+
T Consensus       182 Ad~i~~e---~~~~~~~~~~i~~~~~--~P---~ii~~~g~~~~--~~~~eL~~lGv~~v~~~~~~~  238 (287)
T 3b8i_A          182 ADGICLV---GVRDFAHLEAIAEHLH--IP---LMLVTYGNPQL--RDDARLARLGVRVVVNGHAAY  238 (287)
T ss_dssp             CSEEEEE---CCCSHHHHHHHHTTCC--SC---EEEECTTCGGG--CCHHHHHHTTEEEEECCCHHH
T ss_pred             CCEEEec---CCCCHHHHHHHHHhCC--CC---EEEeCCCCCCC--CCHHHHHHcCCcEEEEChHHH
Confidence            9999987   3444555555544432  34   33322222222  223344468988886665544

>2y7e_A 3-keto-5-aminohexanoate cleavage enzyme; lyase, aldolase; 1.28A {Candidatus cloacamonas acidaminovoransorganism_taxid} PDB: 2y7d_A 2y7f_A* 2y7g_A

Probab=82.69  E-value=6.6  Score=37.46  Aligned_cols=127  Identities=13%  Similarity=0.147  Sum_probs=85.7

Q ss_pred             CCCHHHHHHHHHHHHhCCCCEE----EEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCC
Q 015894          244 MVPPSKVAYVSKQLYDMGCSEI----SLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGIS  319 (398)
Q Consensus       244 r~~~~~l~~~a~~l~~~Gad~I----~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~  319 (398)
                      ..+|+++++-+.+..++||..+    +=.|-.....|..+++++..+|+.-|++.|.+-+--..+....--++.++..-+
T Consensus        30 PvTpeEia~~A~~a~~AGAaivHlHvRd~~G~ps~d~~~~~e~~~~IR~~~pd~ii~~TTg~~~~~~~eeR~~~~~~~Pe  109 (282)
T 2y7e_A           30 PITPEEQAKEAKACFEAGARVIHLHIREDDGRPSQRLDRFQEAISAIREVVPEIIIQISTGGAVGESFDKRLAPLALKPE  109 (282)
T ss_dssp             CCSHHHHHHHHHHHHHHTEEEEEECEECTTSCEECCHHHHHHHHHHHHHHCTTSEEEECSSCSTTCCHHHHHGGGGGCCS
T ss_pred             CCCHHHHHHHHHHHHHcCCcEEEEeecCCCCCcCCCHHHHHHHHHHHHHHCCCeEEEeCCCCCCCCCHHHHHHHhhcCCC
Confidence            3688999999999999998764    325556778899999999999988888777776644433334444444444445


Q ss_pred             EEeeccccCCCCCCCCC--CCCCccHHHHHHHHHhCCCCCc---cChHHHHHHHHHHHH
Q 015894          320 TVDSSVSGLGGCPYAKG--ASGNVATEDVVYMLNGLGVRTN---VDIRKLMIAGDFICK  373 (398)
Q Consensus       320 ~VD~Sv~GlGecp~a~g--raGNa~lE~vv~~L~~~Gi~t~---iDl~~L~~~~~~v~~  373 (398)
                      +...++   |..=|...  ......+++++..+++.|+.+.   +|...|..+..++++
T Consensus       110 ~asl~~---gs~Nf~~~v~~n~~~~~~~~~~~~~e~Gv~pE~e~fd~g~l~~~~~l~~~  165 (282)
T 2y7e_A          110 MATLNA---GTLNFGDDIFINHPADIIRLAEAFKQYNVVPEVEVYESGMVDAVARLIKK  165 (282)
T ss_dssp             EEEEEC---CCEEETTEEECCCHHHHHHHHHHHHHTTCEEEEEECSHHHHHHHHHHHHT
T ss_pred             EEEecc---cccccccccccCCHHHHHHHHHHHHHcCCeEEEEEECHHHHHHHHHHHHc
Confidence            543333   22111100  1223568899999999998754   788888888877765

>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}

Probab=82.64  E-value=3.6  Score=39.12  Aligned_cols=82  Identities=9%  Similarity=0.016  Sum_probs=66.9

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcC---cCCHHHHHHHHHHHHhhCC-CCeEEE-EeCCccchHHHHHHHHHHhC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIG---VGTPGTVIPMLEAVLDAVP-VDKLAV-HFHDTYGQALSNILASLQMG  317 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G---~~~P~~v~~lv~~l~~~~p-~~~l~~-H~Hnd~GlA~ANalaAl~aG  317 (398)
                      +..|.+.+.++++.+.+.|++.|.++-|+|   .+++++-.++++.+.+... .+++-+ -++|+..-++..+..|-++|
T Consensus        16 g~iD~~~l~~lv~~li~~Gv~gl~~~GttGE~~~Ls~~Er~~v~~~~~~~~~gr~pviaGvg~~~t~~ai~la~~A~~~G   95 (292)
T 2vc6_A           16 DRIDEVALHDLVEWQIEEGSFGLVPCGTTGESPTLSKSEHEQVVEITIKTANGRVPVIAGAGSNSTAEAIAFVRHAQNAG   95 (292)
T ss_dssp             TEECHHHHHHHHHHHHHTTCSEEETTSGGGTGGGSCHHHHHHHHHHHHHHHTTSSCBEEECCCSSHHHHHHHHHHHHHTT
T ss_pred             CCcCHHHHHHHHHHHHHcCCCEEEECccccChhhCCHHHHHHHHHHHHHHhCCCCcEEEecCCccHHHHHHHHHHHHHcC
Confidence            568899999999999999999999999988   5677888888888887653 345545 45678888999999999999


Q ss_pred             CCEEeec
Q 015894          318 ISTVDSS  324 (398)
Q Consensus       318 a~~VD~S  324 (398)
                      |+.+=+.
T Consensus        96 adavlv~  102 (292)
T 2vc6_A           96 ADGVLIV  102 (292)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEc
Confidence            9977544

>3eb2_A Putative dihydrodipicolinate synthetase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2., structural genomics; HET: PGE; 2.04A {Rhodopseudomonas palustris} SCOP: c.1.10.0

Probab=82.63  E-value=12  Score=35.57  Aligned_cols=78  Identities=5%  Similarity=-0.137  Sum_probs=43.3

Q ss_pred             HHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHh-CCCCE--EEEccCcCcCCHHHHHHHHHHHHhhCCC
Q 015894          216 RDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYD-MGCSE--ISLGDTIGVGTPGTVIPMLEAVLDAVPV  292 (398)
Q Consensus       216 ~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~-~Gad~--I~L~DT~G~~~P~~v~~lv~~l~~~~p~  292 (398)
                      .+.++.|++.|.....-+     .|.-.+.+.+.+.+..+.+.+ .+...  ..++...|.-.+.+   ++..|. ..|+
T Consensus        89 i~la~~a~~~Gadavlv~-----~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~---~~~~La-~~pn  159 (300)
T 3eb2_A           89 VAQAKLYEKLGADGILAI-----LEAYFPLKDAQIESYFRAIADAVEIPVVIYTNPQFQRSDLTLD---VIARLA-EHPR  159 (300)
T ss_dssp             HHHHHHHHHHTCSEEEEE-----ECCSSCCCHHHHHHHHHHHHHHCSSCEEEEECTTTCSSCCCHH---HHHHHH-TSTT
T ss_pred             HHHHHHHHHcCCCEEEEc-----CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECccccCCCCCHH---HHHHHH-cCCC
Confidence            455677778888653212     354445677777777776655 35443  45566777644432   333332 4676


Q ss_pred             CeEEE-EeCCcc
Q 015894          293 DKLAV-HFHDTY  303 (398)
Q Consensus       293 ~~l~~-H~Hnd~  303 (398)
                      + +++ ....|.
T Consensus       160 I-vgiKdssgd~  170 (300)
T 3eb2_A          160 I-RYIKDASTNT  170 (300)
T ss_dssp             E-EEEEECSSBH
T ss_pred             E-EEEEcCCCCH
Confidence            4 666 444444

>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}

Probab=82.50  E-value=6.1  Score=36.60  Aligned_cols=70  Identities=14%  Similarity=0.092  Sum_probs=54.4

Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          245 VPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       245 ~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      .+++...++++.+.+.|++.|.+.-+    +|. ..+.++.+++.+|+..++.-+   . +-...+-.|+++||+.|-+
T Consensus        43 ~~~~~a~~~a~al~~gGi~~iEvt~~----t~~-a~e~I~~l~~~~~~~~iGaGT---V-lt~~~a~~Ai~AGA~fIvs  112 (232)
T 4e38_A           43 DNAEDIIPLGKVLAENGLPAAEITFR----SDA-AVEAIRLLRQAQPEMLIGAGT---I-LNGEQALAAKEAGATFVVS  112 (232)
T ss_dssp             SSGGGHHHHHHHHHHTTCCEEEEETT----STT-HHHHHHHHHHHCTTCEEEEEC---C-CSHHHHHHHHHHTCSEEEC
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEEeCC----CCC-HHHHHHHHHHhCCCCEEeECC---c-CCHHHHHHHHHcCCCEEEe
Confidence            36788999999999999999988544    343 357788899999987676543   2 3477888999999999853

>1tv8_A MOAA, molybdenum cofactor biosynthesis protein A; TIM barrel, ligand binding protein; HET: SAM; 2.20A {Staphylococcus aureus} SCOP: c.1.28.3 PDB: 1tv7_A* 2fb3_A* 2fb2_A*

Probab=82.40  E-value=8.1  Score=36.82  Aligned_cols=121  Identities=14%  Similarity=0.114  Sum_probs=63.9

Q ss_pred             HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCC-CCEEEEccCcCcCCHHHHHHHHHHHHhh-CCC
Q 015894          215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMG-CSEISLGDTIGVGTPGTVIPMLEAVLDA-VPV  292 (398)
Q Consensus       215 ~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~G-ad~I~L~DT~G~~~P~~v~~lv~~l~~~-~p~  292 (398)
                      +.++++.+++.|..- +.++   |.+..-+  + .+.++++.+.+.+ ...+.+ -|.|.+.+.    .+..+++. +..
T Consensus        55 i~~~i~~~~~~g~~~-i~~t---GGEPll~--~-~l~~li~~~~~~~~~~~i~i-~TNG~ll~~----~~~~L~~~g~~~  122 (340)
T 1tv8_A           55 MARIAKVYAELGVKK-IRIT---GGEPLMR--R-DLDVLIAKLNQIDGIEDIGL-TTNGLLLKK----HGQKLYDAGLRR  122 (340)
T ss_dssp             HHHHHHHHHHTTCCE-EEEE---SSCGGGS--T-THHHHHHHHTTCTTCCEEEE-EECSTTHHH----HHHHHHHHTCCE
T ss_pred             HHHHHHHHHHCCCCE-EEEe---CCCccch--h-hHHHHHHHHHhCCCCCeEEE-EeCccchHH----HHHHHHHCCCCE
Confidence            344555666677642 2232   3222112  2 3456777776664 346666 578887654    34444443 333


Q ss_pred             CeEEEEeCC------------ccchHHHHHHHHHHhCCC-EEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCC
Q 015894          293 DKLAVHFHD------------TYGQALSNILASLQMGIS-TVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVR  356 (398)
Q Consensus       293 ~~l~~H~Hn------------d~GlA~ANalaAl~aGa~-~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~  356 (398)
                      +.|.+++.+            ++...+.+...+.++|.. .+++.+ .-|.        ---.+++++..++++|++
T Consensus       123 v~iSld~~~~~~~~~i~~~~~~~~~v~~~i~~l~~~g~~v~i~~vv-~~g~--------n~~ei~~~~~~~~~~g~~  190 (340)
T 1tv8_A          123 INVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVI-QKGI--------NDDQIIPMLEYFKDKHIE  190 (340)
T ss_dssp             EEEECCCSSHHHHHHHHSSCCCHHHHHHHHHHHHHTTCEEEEEEEE-CTTT--------TGGGHHHHHHHHHHTTCC
T ss_pred             EEEecCCCCHHHHHHhhCCCCCHHHHHHHHHHHHHCCCCEEEEEEE-eCCC--------CHHHHHHHHHHHHhcCCe
Confidence            445555532            344556666667778873 233333 1121        123677888888877764

>2ocz_A 3-dehydroquinate dehydratase; structural genomics, DH streptococcus pyogenes, dehydroshikimate, PSI-2, protein ST initiative; HET: MSE; 1.85A {Streptococcus pyogenes serotype M1}

Probab=82.24  E-value=18  Score=33.17  Aligned_cols=181  Identities=13%  Similarity=0.064  Sum_probs=104.2

Q ss_pred             CCCEEEEecCCCCCcccCCCCHHHHHHHHHh-ccCCcEEEEeCCH-h-------------hHHHHHHcC-CCEEEEeccC
Q 015894          132 GLAVVEATSFVSPKWVPQLADAKDVMAAIQN-VEGARFPVLTPNL-K-------------GFEAAVAAG-AKEVAIFASA  195 (398)
Q Consensus       132 Gv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~-~~~~~l~~l~~n~-~-------------~ie~a~~~G-v~~v~i~~~~  195 (398)
                      |.|.||+-...-..     .+.+++.+.++. +++..+..-.|.. +             =++.+++.| ++.|.|-...
T Consensus        28 ~~D~vElRvD~l~~-----~~~~~v~~~l~~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~g~~d~iDvEl~~  102 (231)
T 2ocz_A           28 DVNLIEWRADFLPK-----DEIVAVAPAIFEKFAGKEIIFTLRTVQEGGNITLSSQEYVDIIKEINAIYNPDYIDFEYFT  102 (231)
T ss_dssp             TCSEEEEEGGGSCG-----GGHHHHHHHHHHHTTTSEEEEECCBGGGTCSBCCCHHHHHHHHHHHHHHHCCSEEEEETTT
T ss_pred             CCCEEEEEeccccc-----cCHHHHHHHHHHHcCCCcEEEEEeecccCCCCCCCHHHHHHHHHHHHHcCCCCEEEEECCC
Confidence            88999997532211     124555555554 4444333333421 1             145677888 9999987653


Q ss_pred             chHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCC
Q 015894          196 SESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGT  275 (398)
Q Consensus       196 Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~  275 (398)
                      .+                   +.++.++.. .++-  +++-    +...++ +.+....+++.++|||.+-|+=+.  -+
T Consensus       103 ~~-------------------~~i~~~~~~-~kvI--~S~H----df~~tp-~el~~~~~~~~~~gaDivKia~~a--~~  153 (231)
T 2ocz_A          103 HK-------------------SVFQEMLDF-PNLI--LSYH----NFEETP-ENLMEAFSEMTKLAPRVVKIAVMP--QS  153 (231)
T ss_dssp             TG-------------------GGGGGGTTC-SSEE--EEEE----ESSCCC-TTHHHHHHHHHHTCCSEEEEEECC--SS
T ss_pred             CH-------------------HHHHHhhcC-CeEE--EEec----CCCCCH-HHHHHHHHHHHHcCCCEEEEEeec--CC
Confidence            21                   123344444 4443  2321    222333 888889999999999999888663  46


Q ss_pred             HHHHHHHHHHHHhh---CCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q 015894          276 PGTVIPMLEAVLDA---VPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNG  352 (398)
Q Consensus       276 P~~v~~lv~~l~~~---~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~  352 (398)
                      +.++.++++...+.   .+..|+-.-  +.-.++.-.-+.+-..|-...-+++.. ..      ..|+.+.+++...|+.
T Consensus       154 ~~D~l~ll~~~~~~~~~~~~~P~I~~--~MG~~G~~SRi~~~~~GS~~Tf~~l~~-~s------APGQl~~~el~~~l~~  224 (231)
T 2ocz_A          154 EQDVLDLMNYTRGFKTLNPEQEFATI--SMGKLGRLSRFAGDVIGSSWTYVSLDH-VS------GPGQVTLNDMKRIIEV  224 (231)
T ss_dssp             HHHHHHHHHHHHHHHHHCTTCEEEEE--ECHHHHGGGGGCHHHHTCCEEECBC-------------CCCBHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhccCCCCEEEE--EcCCCchhHHHHHHHhCCceEeccCCC-CC------CCCCCCHHHHHHHHHH
Confidence            77888887766532   344444331  222233344455566788887777732 23      4669999999988876


Q ss_pred             CCC
Q 015894          353 LGV  355 (398)
Q Consensus       353 ~Gi  355 (398)
                      +..
T Consensus       225 l~~  227 (231)
T 2ocz_A          225 LEM  227 (231)
T ss_dssp             HC-
T ss_pred             hhh
Confidence            543

>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}

Probab=82.20  E-value=10  Score=37.82  Aligned_cols=67  Identities=15%  Similarity=0.128  Sum_probs=49.1

Q ss_pred             HHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894          251 AYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       251 ~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S  324 (398)
                      .+.++.+.++|++.|.|-=+.  ..|..+.++++.+++.++ +++.++.=    .....+..++++||+.|-+.
T Consensus       146 ~e~~~~lveaGvdvIvldta~--G~~~~~~e~I~~ik~~~~-i~Vi~g~V----~t~e~A~~a~~aGAD~I~vG  212 (400)
T 3ffs_A          146 IERAKLLVEAGVDVIVLDSAH--GHSLNIIRTLKEIKSKMN-IDVIVGNV----VTEEATKELIENGADGIKVG  212 (400)
T ss_dssp             CHHHHHHHHHTCSEEEECCSC--CSBHHHHHHHHHHHTTCC-CEEEEEEE----CSHHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHHHHHcCCCEEEEeCCC--CCcccHHHHHHHHHhcCC-CeEEEeec----CCHHHHHHHHHcCCCEEEEe
Confidence            466888889999988663233  368888999999999874 56665311    12456688899999999883

>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1

Probab=82.14  E-value=17  Score=36.85  Aligned_cols=128  Identities=15%  Similarity=0.187  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh-ccCCcEE-EEeCCHhhHHHHHHcCCCEEEEeccCc-
Q 015894          120 VKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN-VEGARFP-VLTPNLKGFEAAVAAGAKEVAIFASAS-  196 (398)
Q Consensus       120 ~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~-~~~~~l~-~l~~n~~~ie~a~~~Gv~~v~i~~~~S-  196 (398)
                      ...+.++.|.++|++.|++.+....     .....+.++.+++ .|+..+. ..+.+.++.+.+.++|+|.|.+....- 
T Consensus       237 ~~~~~a~~l~~aGvd~v~i~~~~G~-----~~~~~e~i~~i~~~~p~~pvi~g~~~t~e~a~~l~~~G~d~I~v~~~~G~  311 (494)
T 1vrd_A          237 ETMERVEKLVKAGVDVIVIDTAHGH-----SRRVIETLEMIKADYPDLPVVAGNVATPEGTEALIKAGADAVKVGVGPGS  311 (494)
T ss_dssp             THHHHHHHHHHTTCSEEEECCSCCS-----SHHHHHHHHHHHHHCTTSCEEEEEECSHHHHHHHHHTTCSEEEECSSCST
T ss_pred             hHHHHHHHHHHhCCCEEEEEecCCc-----hHHHHHHHHHHHHHCCCceEEeCCcCCHHHHHHHHHcCCCEEEEcCCCCc
Confidence            3456788999999999999653210     0123455666663 4555443 334577888999999999998843211 


Q ss_pred             --hHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 015894          197 --ESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG  268 (398)
Q Consensus       197 --d~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~  268 (398)
                        -.......+....   ..+..+.+.+++.+++|.+         +.+-.+++.+.+    +.++||+.+.++
T Consensus       312 ~~~~~~~~~~g~p~~---~~l~~v~~~~~~~~ipvia---------~GGI~~~~di~k----ala~GAd~V~iG  369 (494)
T 1vrd_A          312 ICTTRVVAGVGVPQL---TAVMECSEVARKYDVPIIA---------DGGIRYSGDIVK----ALAAGAESVMVG  369 (494)
T ss_dssp             TCHHHHHHCCCCCHH---HHHHHHHHHHHTTTCCEEE---------ESCCCSHHHHHH----HHHTTCSEEEES
T ss_pred             cccccccCCCCccHH---HHHHHHHHHHhhcCCCEEE---------ECCcCCHHHHHH----HHHcCCCEEEEC
Confidence              0011112222332   3344445555556777641         233345655444    335899887765

>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A

Probab=82.09  E-value=3.6  Score=39.95  Aligned_cols=85  Identities=18%  Similarity=0.171  Sum_probs=47.4

Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCEEEE--------ccCcCcCC--H-HHHHHHHHHHHhhCCCC---------eEEEEe
Q 015894          240 PVEGMVPPSKVAYVSKQLYDMGCSEISL--------GDTIGVGT--P-GTVIPMLEAVLDAVPVD---------KLAVHF  299 (398)
Q Consensus       240 ~~~~r~~~~~l~~~a~~l~~~Gad~I~L--------~DT~G~~~--P-~~v~~lv~~l~~~~p~~---------~l~~H~  299 (398)
                      |.-.|++.+.+.+.++++.+.|+..|.|        +|..|...  | .=+.+-|+.+|+.+|++         +..-|+
T Consensus        51 PGv~r~sid~l~~~~~~~~~~Gi~~v~LFgvp~~~~Kd~~gs~A~~~~g~v~~air~iK~~~pdl~vitDvcLc~YT~HG  130 (330)
T 1pv8_A           51 PGVARYGVKRLEEMLRPLVEEGLRCVLIFGVPSRVPKDERGSAADSEESPAIEAIHLLRKTFPNLLVACDVCLCPYTSHG  130 (330)
T ss_dssp             TTCEEECHHHHHHHHHHHHHHTCCEEEEEECC--------------CCSHHHHHHHHHHHHSTTSEEEEEECCC------
T ss_pred             CCceeecHHHHHHHHHHHHHCCCCEEEEecCCcccCCCccccccCCCCChHHHHHHHHHHHCCCeEEEEeeecccccCCC
Confidence            4445678888888888888888877655        56656543  3 23778899999999974         455799


Q ss_pred             CCcc----ch---------HHHHHHHHHHhCCCEEeec
Q 015894          300 HDTY----GQ---------ALSNILASLQMGISTVDSS  324 (398)
Q Consensus       300 Hnd~----Gl---------A~ANalaAl~aGa~~VD~S  324 (398)
                      |+-.    |-         -.-.++.-.+|||++|--|
T Consensus       131 HcGil~~~g~v~ND~Tl~~La~~Als~A~AGAdiVAPS  168 (330)
T 1pv8_A          131 HCGLLSENGAFRAEESRQRLAEVALAYAKAGCQVVAPS  168 (330)
T ss_dssp             ---------CHHHHHHHHHHHHHHHHHHHHTCSEEEEC
T ss_pred             ceeEECCCCcCccHHHHHHHHHHHHHHHHcCCCeeecc
Confidence            9742    31         0122556678999998544

>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0

Probab=81.97  E-value=17  Score=34.76  Aligned_cols=16  Identities=25%  Similarity=0.258  Sum_probs=10.7

Q ss_pred             CCCCccHHHHHHHHHh
Q 015894          337 ASGNVATEDVVYMLNG  352 (398)
Q Consensus       337 raGNa~lE~vv~~L~~  352 (398)
                      ..+|..-+.++...+.
T Consensus       214 ~~an~~P~~~~~l~~a  229 (316)
T 3e96_A          214 GLVNLLPQKAVEMLEA  229 (316)
T ss_dssp             SGGGTCHHHHHHHHHH
T ss_pred             chhhhhHHHHHHHHHH
Confidence            3667777777776654

>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus}

Probab=81.97  E-value=35  Score=32.18  Aligned_cols=77  Identities=9%  Similarity=-0.031  Sum_probs=39.1

Q ss_pred             HHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHh-CCCCE--EEEccCcCc-CCHHHHHHHHHHHHhhCC
Q 015894          216 RDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYD-MGCSE--ISLGDTIGV-GTPGTVIPMLEAVLDAVP  291 (398)
Q Consensus       216 ~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~-~Gad~--I~L~DT~G~-~~P~~v~~lv~~l~~~~p  291 (398)
                      .+.++.|++.|.....-+     .|.-.+.+.+.+.+..+.+.+ .+...  -.++...|. ++|+.+.++.+    ..|
T Consensus        85 i~la~~A~~~Gadavlv~-----~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La~----~~p  155 (294)
T 2ehh_A           85 VHLTAHAKEVGADGALVV-----VPYYNKPTQRGLYEHFKTVAQEVDIPIIIYNIPSRTCVEISVDTMFKLAS----ECE  155 (294)
T ss_dssp             HHHHHHHHHTTCSEEEEE-----CCCSSCCCHHHHHHHHHHHHHHCCSCEEEEECHHHHSCCCCHHHHHHHHH----HCT
T ss_pred             HHHHHHHHhcCCCEEEEC-----CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCcCCCHHHHHHHHh----hCC
Confidence            344566777777643111     344445566666666655544 24443  234555564 55665555532    246


Q ss_pred             CCeEEE-EeCCc
Q 015894          292 VDKLAV-HFHDT  302 (398)
Q Consensus       292 ~~~l~~-H~Hnd  302 (398)
                      ++ +++ ....|
T Consensus       156 ni-vgiKds~gd  166 (294)
T 2ehh_A          156 NI-VASKESTPN  166 (294)
T ss_dssp             TE-EEEEECCSC
T ss_pred             CE-EEEEeCCCC
Confidence            53 555 34444

>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}

Probab=81.93  E-value=33  Score=32.53  Aligned_cols=15  Identities=13%  Similarity=0.195  Sum_probs=9.9

Q ss_pred             CCCCccHHHHHHHHH
Q 015894          337 ASGNVATEDVVYMLN  351 (398)
Q Consensus       337 raGNa~lE~vv~~L~  351 (398)
                      ..+|..-+.++...+
T Consensus       218 ~~an~~P~~~~~l~~  232 (304)
T 3cpr_A          218 VIGHAAPTALRELYT  232 (304)
T ss_dssp             SGGGTCHHHHHHHHH
T ss_pred             cHHHhhHHHHHHHHH
Confidence            366777777776654

>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis}

Probab=81.81  E-value=21  Score=33.79  Aligned_cols=61  Identities=11%  Similarity=-0.070  Sum_probs=28.4

Q ss_pred             HHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC-CCCE--EEEccCcCc-CCHHHHHHH
Q 015894          217 DVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM-GCSE--ISLGDTIGV-GTPGTVIPM  282 (398)
Q Consensus       217 ~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~-Gad~--I~L~DT~G~-~~P~~v~~l  282 (398)
                      +.++.|++.|.....     ...|.-.+.+.+.+.+..+.+.+. +...  -.++...|. ++|+.+.++
T Consensus        86 ~la~~A~~~Gadavl-----v~~P~y~~~s~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~L  150 (297)
T 2rfg_A           86 RYAQHAQQAGADAVL-----CVAGYYNRPSQEGLYQHFKMVHDAIDIPIIVYNIPPRAVVDIKPETMARL  150 (297)
T ss_dssp             HHHHHHHHHTCSEEE-----ECCCTTTCCCHHHHHHHHHHHHHHCSSCEEEEECHHHHSCCCCHHHHHHH
T ss_pred             HHHHHHHhcCCCEEE-----EcCCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHH
Confidence            344556666665321     113444445556665555554442 3332  234444554 444544444

>3b0p_A TRNA-dihydrouridine synthase; TIM barrel, oxidoreductase; HET: FMN; 1.70A {Thermus thermophilus} PDB: 3b0u_X* 3b0v_C*

Probab=81.80  E-value=8.7  Score=37.41  Aligned_cols=91  Identities=20%  Similarity=0.203  Sum_probs=62.2

Q ss_pred             hCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc----------cCcCcC---CHHHHHHHHHHHHhhC
Q 015894          224 ELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG----------DTIGVG---TPGTVIPMLEAVLDAV  290 (398)
Q Consensus       224 ~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~----------DT~G~~---~P~~v~~lv~~l~~~~  290 (398)
                      ..+..+.++|.   |      .+++.+.+.++.+.++|+|.|.|-          |-.|..   .|..+.++++++++..
T Consensus        55 ~~~~p~~vQL~---g------~~p~~~~~aA~~a~~~G~D~IeIn~gcP~~~~~~d~~G~~l~~~~~~~~eiv~av~~~v  125 (350)
T 3b0p_A           55 PEEHPIALQLA---G------SDPKSLAEAARIGEAFGYDEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAV  125 (350)
T ss_dssp             GGGCSEEEEEE---C------SCHHHHHHHHHHHHHTTCSEEEEEECCCSHHHHHTTCGGGGGGCHHHHHHHHHHHHHHC
T ss_pred             CCCCeEEEEeC---C------CCHHHHHHHHHHHHHcCCCEEEECCcCCCCcCcCCCcchhHHhCHHHHHHHHHHHHHHh
Confidence            44556665554   2      257888889999999999987664          445543   4889999999999877


Q ss_pred             CCCeEEEEe---CCccc---hHHHHHHHHHHhCCCEEeec
Q 015894          291 PVDKLAVHF---HDTYG---QALSNILASLQMGISTVDSS  324 (398)
Q Consensus       291 p~~~l~~H~---Hnd~G---lA~ANalaAl~aGa~~VD~S  324 (398)
                       +.||.+-.   -++..   -...-+..+.++|++.|.++
T Consensus       126 -~~PV~vKiR~g~~~~~~~~~~~~~a~~l~~aG~d~I~V~  164 (350)
T 3b0p_A          126 -RVPVTVKMRLGLEGKETYRGLAQSVEAMAEAGVKVFVVH  164 (350)
T ss_dssp             -SSCEEEEEESCBTTCCCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred             -CCceEEEEecCcCccccHHHHHHHHHHHHHcCCCEEEEe
Confidence             35677732   22221   23445566678999999875

>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A*

Probab=81.72  E-value=13  Score=35.18  Aligned_cols=61  Identities=15%  Similarity=0.126  Sum_probs=29.0

Q ss_pred             HHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC-CCCE--EEEccCcCc-CCHHHHHHH
Q 015894          217 DVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM-GCSE--ISLGDTIGV-GTPGTVIPM  282 (398)
Q Consensus       217 ~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~-Gad~--I~L~DT~G~-~~P~~v~~l  282 (398)
                      +.++.|++.|.....-+     .|.-.+.+.+.+.+..+.+.+. +...  -.++...|. ++|+.+.++
T Consensus        87 ~la~~a~~~Gadavlv~-----~P~y~~~s~~~l~~~f~~ia~a~~lPiilYn~P~~tg~~l~~~~~~~L  151 (291)
T 3a5f_A           87 AMSKWAESIGVDGLLVI-----TPYYNKTTQKGLVKHFKAVSDAVSTPIIIYNVPGRTGLNITPGTLKEL  151 (291)
T ss_dssp             HHHHHHHHTTCSEEEEE-----CCCSSCCCHHHHHHHC-CTGGGCCSCEEEEECHHHHSCCCCHHHHHHH
T ss_pred             HHHHHHHhcCCCEEEEc-----CCCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCccccCCCCCHHHHHHH
Confidence            44566666776543111     3444445666666655554443 3332  234444554 445554444

>2g0w_A LMO2234 protein; putative sugar isomerase, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE PG4; 1.70A {Listeria monocytogenes} SCOP: c.1.15.4

Probab=81.67  E-value=19  Score=33.33  Aligned_cols=146  Identities=10%  Similarity=0.026  Sum_probs=0.0

Q ss_pred             hhhhhhccCCCCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhcc
Q 015894           85 DLTSKLLGRVPGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVE  164 (398)
Q Consensus        85 ~~~~~~~~~~p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~  164 (398)
                      .|.+.--.+++.++-|.-.++++..-.          .+.++.+.++|++.||+.......+.+.-.+.+++.+.+++ .
T Consensus        12 ~~~~~~~~~~~~klgi~~~~~~~~~~~----------~~~l~~a~~~G~~~vEl~~~~~~~~~~~~~~~~~~~~~l~~-~   80 (296)
T 2g0w_A           12 HMTNANGNLKKCPITISSYTLGTEVSF----------PKRVKVAAENGFDGIGLRAENYVDALAAGLTDEDMLRILDE-H   80 (296)
T ss_dssp             ----------CCCEEECGGGGTTTSCH----------HHHHHHHHHTTCSEEEEEHHHHHHHHHTTCCHHHHHHHHHH-T
T ss_pred             hcccCCCCcCCCCceeechhcCCCCCH----------HHHHHHHHHcCCCEEEeCHHHHHHHHhcCCcHHHHHHHHHH-c


Q ss_pred             CCcEEEEeC--CH---------------hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCC
Q 015894          165 GARFPVLTP--NL---------------KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSI  227 (398)
Q Consensus       165 ~~~l~~l~~--n~---------------~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~  227 (398)
                      ++++.++..  +.               +.++.|.+.|++.|.+...         -..+.+...+.+.++.++|  .|+
T Consensus        81 gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~i~~A~~lGa~~v~~g~~---------~~~~~~~~~~~l~~l~~~a--~Gv  149 (296)
T 2g0w_A           81 NMKVTEVEYITQWGTAEDRTAEQQKKEQTTFHMARLFGVKHINCGLL---------EKIPEEQIIVALGELCDRA--EEL  149 (296)
T ss_dssp             TCEEEEEECBCCCSSTTTCCHHHHHHHHHHHHHHHHHTCCEEEECCC---------SCCCHHHHHHHHHHHHHHH--TTS
T ss_pred             CCceEeehhhhccccCChHHHHHHHHHHHHHHHHHHcCCCEEEEcCC---------CCCCHHHHHHHHHHHHHHh--cCC


Q ss_pred             cEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894          228 PVRGYLSCVVGCPVEGMVPPSKVAYVSKQL  257 (398)
Q Consensus       228 ~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l  257 (398)
                      .+...-.     +...-.+++.+.++++.+
T Consensus       150 ~l~lE~~-----~~~~~~~~~~~~~l~~~v  174 (296)
T 2g0w_A          150 IIGLEFM-----PYSGVADLQAAWRVAEAC  174 (296)
T ss_dssp             EEEEECC-----TTSSSCSHHHHHHHHHHH
T ss_pred             EEEEEec-----CCCCCCCHHHHHHHHHHh

>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}

Probab=81.65  E-value=20  Score=35.34  Aligned_cols=69  Identities=7%  Similarity=0.036  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh-ccCCcEEE-EeCCHhhHHHHHHcCCCEEEEe
Q 015894          119 VVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN-VEGARFPV-LTPNLKGFEAAVAAGAKEVAIF  192 (398)
Q Consensus       119 ~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~-~~~~~l~~-l~~n~~~ie~a~~~Gv~~v~i~  192 (398)
                      +...+.++.+.++|++.|++-.....   +  ...++.++.+++ .++..+.+ -+.+.++.+.+.++|+|.|.+.
T Consensus        99 ~~~~e~~~~a~~aGvdvI~id~a~G~---~--~~~~e~I~~ir~~~~~~~Vi~G~V~T~e~A~~a~~aGaD~I~Vg  169 (361)
T 3r2g_A           99 ENELQRAEALRDAGADFFCVDVAHAH---A--KYVGKTLKSLRQLLGSRCIMAGNVATYAGADYLASCGADIIKAG  169 (361)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECSCCS---S--HHHHHHHHHHHHHHTTCEEEEEEECSHHHHHHHHHTTCSEEEEC
T ss_pred             HHHHHHHHHHHHcCCCEEEEeCCCCC---c--HhHHHHHHHHHHhcCCCeEEEcCcCCHHHHHHHHHcCCCEEEEc
Confidence            45577899999999999999543210   0  112455666664 35665554 3567888999999999999984

>1twd_A Copper homeostasis protein CUTC; TIM-like protein, structural genomics, PSI, protein structure initiative; 1.70A {Shigella flexneri} SCOP: c.1.30.1 PDB: 1x7i_A 1x8c_A

Probab=81.63  E-value=22  Score=33.34  Aligned_cols=168  Identities=14%  Similarity=0.127  Sum_probs=94.2

Q ss_pred             HHHHHhcCCCEEEEecCCCCCc-ccCCCCHHHHHHHHHhccCCcEEEEeC--------C-------HhhHHHHHHcCCCE
Q 015894          125 IKLLVSSGLAVVEATSFVSPKW-VPQLADAKDVMAAIQNVEGARFPVLTP--------N-------LKGFEAAVAAGAKE  188 (398)
Q Consensus       125 a~~L~~aGv~~IEvG~~~~~~~-~p~~~D~~~v~~~i~~~~~~~l~~l~~--------n-------~~~ie~a~~~Gv~~  188 (398)
                      +..-.+.|.+.||+=.-..... -|   +. .+++.+++..++.+.++.|        +       ..|++.+.+.|++.
T Consensus        14 a~~A~~~GAdRIELc~~L~~GGlTP---S~-g~i~~~~~~~~ipv~vMIRPR~GdF~Ys~~E~~~M~~Di~~~~~~GadG   89 (256)
T 1twd_A           14 ALTAQQNGADRVELCAAPKEGGLTP---SL-GVLKSVRQRVTIPVHPIIRPRGGDFCYSDGEFAAILEDVRTVRELGFPG   89 (256)
T ss_dssp             HHHHHHTTCSEEEECBCGGGTCBCC---CH-HHHHHHHHHCCSCEEEBCCSSSSCSCCCHHHHHHHHHHHHHHHHTTCSE
T ss_pred             HHHHHHcCCCEEEEcCCcccCCCCC---CH-HHHHHHHHHcCCceEEEECCCCCCCcCCHHHHHHHHHHHHHHHHcCCCE
Confidence            4556789999999954211000 01   12 3344455445677777775        2       13577889999998


Q ss_pred             EEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc
Q 015894          189 VAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG  268 (398)
Q Consensus       189 v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~  268 (398)
                      |-+-+=..|-.+      +    .+.++++++.|+  |+.++  +-.+|   |.. .++.   +..+.+.++|+++|-  
T Consensus        90 vV~G~Lt~dg~i------D----~~~~~~Li~~a~--~~~vT--FHRAf---D~~-~d~~---~ale~L~~lG~~rIL--  146 (256)
T 1twd_A           90 LVTGVLDVDGNV------D----MPRMEKIMAAAG--PLAVT--FHRAF---DMC-ANPL---YTLNNLAELGIARVL--  146 (256)
T ss_dssp             EEECCBCTTSSB------C----HHHHHHHHHHHT--TSEEE--ECGGG---GGC-SCHH---HHHHHHHHHTCCEEE--
T ss_pred             EEEeeECCCCCc------C----HHHHHHHHHHhC--CCcEE--EECch---hcc-CCHH---HHHHHHHHcCCCEEE--
Confidence            887544333221      1    345566677665  56554  44445   222 2443   346778889999987  


Q ss_pred             cCcCcCCH-HHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894          269 DTIGVGTP-GTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       269 DT~G~~~P-~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S  324 (398)
                       |.|.... .+-.++++.+.+....+.|-.=    -|.-..|.-.-+..|++.++.|
T Consensus       147 -TSG~~~~a~~g~~~L~~Lv~~a~~i~Im~G----gGv~~~Ni~~l~~tGv~e~H~S  198 (256)
T 1twd_A          147 -TSGQKSDALQGLSKIMELIAHRDAPIIMAG----AGVRAENLHHFLDAGVLEVHSS  198 (256)
T ss_dssp             -ECTTSSSTTTTHHHHHHHHTSSSCCEEEEE----SSCCTTTHHHHHHHTCSEEEEC
T ss_pred             -CCCCCCCHHHHHHHHHHHHHhhCCcEEEec----CCcCHHHHHHHHHcCCCeEeEC
Confidence             6665433 4444556666554332222111    1232334333337899999977

>3gg8_A Pyruvate kinase; malaria, genomics, proteomics, glycolysis, magnesium, transferase, structural genomics, STRU genomics consortium, SGC; 2.21A {Toxoplasma gondii} PDB: 3eoe_A

Probab=81.61  E-value=21  Score=36.84  Aligned_cols=255  Identities=12%  Similarity=0.099  Sum_probs=145.4

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-cCCcEEEEeCCHhhH---HHHHHcCCCEEE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-EGARFPVLTPNLKGF---EAAVAAGAKEVA  190 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~~~~l~~l~~n~~~i---e~a~~~Gv~~v~  190 (398)
                      .++..++..|.+.-.+.|+|.|=+.|--++      .|..++.+.+.+. .++.+.+-.-+.+++   +.-++. .|.|.
T Consensus       204 ~lTekD~~Dl~~f~~~~~vD~Ia~SFVr~a------~Dv~~~r~~l~~~~~~~~iiaKIE~~eav~nldeIl~~-sDgim  276 (511)
T 3gg8_A          204 VIGEKDKHDILNFGIPMGCNFIAASFVQSA------DDVRYIRGLLGPRGRHIRIIPKIENVEGLVNFDEILAE-ADGIM  276 (511)
T ss_dssp             SSCHHHHHHHHHTTTTTTCCEEEETTCCSH------HHHHHHHHHHTGGGTTCEEEEEECSHHHHHTHHHHHHH-CSCEE
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEEcCCCCH------HHHHHHHHHHHhcCCCCeEEEEECCHHHHHhHHHHHHh-CCeEE
Confidence            367778777767778899999988764332      3445555555432 346666666665544   333333 36565


Q ss_pred             EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEE-EeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE-c
Q 015894          191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGY-LSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL-G  268 (398)
Q Consensus       191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~-l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L-~  268 (398)
                      |.  -.|.    ...+..++.....+.+++.|+++|..|-+. =+.. +.-...+.+..++-+++.... .|+|.|-| .
T Consensus       277 Va--RGDL----gvei~~e~v~~~qk~ii~~~~~~gkpvi~ATQmLe-SMi~~p~PTRAEvsDVAnAV~-dGaDavMLSg  348 (511)
T 3gg8_A          277 IA--RGDL----GMEIPPEKVFLAQKMMIAKCNVVGKPVITATQMLE-SMIKNPRPTRAEAADVANAVL-DGTDCVMLSG  348 (511)
T ss_dssp             EE--HHHH----HHHSCHHHHHHHHHHHHHHHHHTTCCEEEESSSSG-GGGTCSSCCHHHHHHHHHHHH-HTCSEEEESH
T ss_pred             Ee--cchh----cCcCCHHHHHHHHHHHHHHHHHcCCCeEEehHHHH-HhhcCCCccHHHHHHHHHHHH-hCCCEEEecc
Confidence            53  2233    222356777777789999999999987521 1110 011123456778888776554 69999999 4


Q ss_pred             cCcCcCCHHHHHHHHHHHHhhCC-CCeE--EE-----Ee--CCc--cchHHHHHHHHHHhCCC-EEeeccccC-----CC
Q 015894          269 DTIGVGTPGTVIPMLEAVLDAVP-VDKL--AV-----HF--HDT--YGQALSNILASLQMGIS-TVDSSVSGL-----GG  330 (398)
Q Consensus       269 DT~G~~~P~~v~~lv~~l~~~~p-~~~l--~~-----H~--Hnd--~GlA~ANalaAl~aGa~-~VD~Sv~Gl-----Ge  330 (398)
                      .|+-.-.|.+..+.+..+....- ....  .+     +.  ..+  -..|.|...+|...+|. +|-.|-.|-     ..
T Consensus       349 ETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~l~a~aIv~~T~SG~tA~~iSr  428 (511)
T 3gg8_A          349 ETANGEFPVITVETMARICYEAETCVDYPALYRAMCLAVPPPISTQEAVARAAVETAECVNAAIILALTETGQTARLIAK  428 (511)
T ss_dssp             HHHTCSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHHHHTCSEEEEECSSSHHHHHHHH
T ss_pred             cccCCCCHHHHHHHHHHHHHHHHhchhHHHHHhhhhhcccCCCCHHHHHHHHHHHHHHhcCCCEEEEECCCchHHHHHHh
Confidence            67778899888887777665431 1000  00     01  111  23555566667788988 667777773     22


Q ss_pred             -CCCCCCCCCCccHHHHHHHHHh-CCCC-----CccChHHHHHHHHHHHHHhCCCCCCCccc
Q 015894          331 -CPYAKGASGNVATEDVVYMLNG-LGVR-----TNVDIRKLMIAGDFICKHLGRTSGSKTAI  385 (398)
Q Consensus       331 -cp~a~graGNa~lE~vv~~L~~-~Gi~-----t~iDl~~L~~~~~~v~~~~g~~~~~~~pi  385 (398)
                       -|-+|- -.-.+-+.+...|.- .|+.     ..-|.+.+.+.+.......|+--+...-+
T Consensus       429 ~RP~~PI-ia~T~~~~~~r~l~L~~GV~p~~~~~~~~~d~~~~~a~~~~~~~g~~~~GD~vV  489 (511)
T 3gg8_A          429 YRPMQPI-LALSASESTIKHLQVIRGVTTMQVPSFQGTDHVIRNAIVVAKERELVTEGESIV  489 (511)
T ss_dssp             TCCSSCE-EEEESCHHHHHHGGGSTTEEEEECCC--CHHHHHHHHHHHHHHTTSCCTTCEEE
T ss_pred             hCCCCCE-EEEcCCHHHHHHhhccCCeEEEEeCCCCCHHHHHHHHHHHHHHCCCCCCcCEEE
Confidence             122221 113344777776664 3553     12345555555555555566554444443

>3apt_A Methylenetetrahydrofolate reductase; TIM barrel, oxidoreductase, flavin; HET: FAD; 1.85A {Thermus thermophilus} PDB: 3apy_A* 1v93_A*

Probab=81.49  E-value=38  Score=32.35  Aligned_cols=128  Identities=16%  Similarity=0.095  Sum_probs=82.1

Q ss_pred             HHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHH
Q 015894          179 EAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLY  258 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~  258 (398)
                      +...+.+++.|.|..+..        +.++...++    ++..+++.|+++..++++.    +   .+.+.+.+....+.
T Consensus        36 ~~L~~~~pd~vsVT~~~~--------g~~r~~t~~----~a~~i~~~g~~~i~Hltc~----~---~~~~~l~~~L~~~~   96 (310)
T 3apt_A           36 EELKAFRPAFVSITYGAM--------GSTRERSVA----WAQRIQSLGLNPLAHLTVA----G---QSRKEVAEVLHRFV   96 (310)
T ss_dssp             HHHGGGCCSEEEECCCST--------TCSHHHHHH----HHHHHHHTTCCBCEEEECT----T---SCHHHHHHHHHHHH
T ss_pred             HHHhcCCCCEEEEecCCC--------CCcchhHHH----HHHHHHHhCCCeEEEeecC----C---CCHHHHHHHHHHHH
Confidence            334445788888876532        334444443    4455567899998888852    3   47788999998999


Q ss_pred             hCCCCEE-EE-ccCcCc-C--------CHHHHHHHHHHHHhhCCC-CeEEEEeC----C---ccchHHHHHHHHHHhCCC
Q 015894          259 DMGCSEI-SL-GDTIGV-G--------TPGTVIPMLEAVLDAVPV-DKLAVHFH----D---TYGQALSNILASLQMGIS  319 (398)
Q Consensus       259 ~~Gad~I-~L-~DT~G~-~--------~P~~v~~lv~~l~~~~p~-~~l~~H~H----n---d~GlA~ANalaAl~aGa~  319 (398)
                      ++|++.| .| .|.... .        .. ...+||+.+++..++ ..|++=++    -   +...-+.+...=+++||+
T Consensus        97 ~~GI~niLaLrGD~p~~~g~~~~~~~~f~-~a~~Lv~~ir~~~g~~f~igvA~yPE~Hp~~~~~~~d~~~Lk~Kv~aGAd  175 (310)
T 3apt_A           97 ESGVENLLALRGDPPRGERVFRPHPEGFR-YAAELVALIRERYGDRVSVGGAAYPEGHPESESLEADLRHFKAKVEAGLD  175 (310)
T ss_dssp             HTTCCEEEEECCCCSTTCCSCCCCTTSCS-SHHHHHHHHHHHHGGGSEEEEEECTTCCTTSSCHHHHHHHHHHHHHHHCS
T ss_pred             HCCCCEEEEEcCCCCCCCCCCCCCCCCCC-CHHHHHHHHHHhCCCCeEEEEEeCCCcCCCCCCHHHHHHHHHHHHHcCCC
Confidence            9999864 33 343221 1        22 577888888876443 45666553    2   233346666677899999


Q ss_pred             EEeeccc
Q 015894          320 TVDSSVS  326 (398)
Q Consensus       320 ~VD~Sv~  326 (398)
                      .+=|-..
T Consensus       176 f~iTQ~f  182 (310)
T 3apt_A          176 FAITQLF  182 (310)
T ss_dssp             EEEECCC
T ss_pred             EEEeccc
Confidence            8877643

>2yx0_A Radical SAM enzyme; predicted tRNA modification enzyme, metal binding protein, structural genomics, NPPSFA; 2.21A {Pyrococcus horikoshii}

Probab=81.45  E-value=37  Score=32.20  Aligned_cols=153  Identities=12%  Similarity=0.027  Sum_probs=85.5

Q ss_pred             CCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC--CHhhHHHHHHcC--CCEEEEeccC-chHHHhhhcCCC
Q 015894          133 LAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP--NLKGFEAAVAAG--AKEVAIFASA-SESFSKSNINCT  207 (398)
Q Consensus       133 v~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~--n~~~ie~a~~~G--v~~v~i~~~~-Sd~~~~~~~~~s  207 (398)
                      +..|-+.....|-..   .+..++++.+++. +.++...+.  ..+-++...++|  ++.+.+.+.. ++-..+.-.+..
T Consensus       142 ~~~v~~sggGEPll~---~~l~~ll~~~~~~-g~~i~l~TNG~~~e~l~~L~~~g~~~~~l~isld~~~~e~~~~i~~~~  217 (342)
T 2yx0_A          142 PTHAAISLSGEPMLY---PYMGDLVEEFHKR-GFTTFIVTNGTIPERLEEMIKEDKLPTQLYVSITAPDIETYNSVNIPM  217 (342)
T ss_dssp             CCEEEECSSSCGGGS---TTHHHHHHHHHHT-TCEEEEEECSCCHHHHHHHHHTTCCCSEEEEEECCSSHHHHHHHHCBS
T ss_pred             CCEEEEcCCCcccch---hhHHHHHHHHHHC-CCcEEEEcCCCcHHHHHHHHhcCCCCCEEEEEccCCCHHHHHHHhCCC
Confidence            455666422223211   1455666666543 454444432  233467778877  8888887655 332222211211


Q ss_pred             HHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc------cC------cCcCC
Q 015894          208 IEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG------DT------IGVGT  275 (398)
Q Consensus       208 ~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~------DT------~G~~~  275 (398)
                      ....++.+.+.++.+++.|+.+.+.+..   .+.....+   +.++++.+.+.|++.|.+.      .+      ....+
T Consensus       218 ~~~~~~~~~~~i~~l~~~g~~v~i~~~l---~~g~n~~~---~~~l~~~l~~~~~~~i~l~~~~~~~~~~~~l~~~~~~~  291 (342)
T 2yx0_A          218 IPDGWERILRFLELMRDLPTRTVVRLTL---VKGENMHS---PEKYAKLILKARPMFVEAKAYMFVGYSRNRLTINNMPS  291 (342)
T ss_dssp             SSCHHHHHHHHHHHHTTCSSEEEEEEEE---CTTTTCCC---HHHHHHHHHHHCCSEEEEEECC------CCCCGGGSCC
T ss_pred             cccHHHHHHHHHHHHHhCCCCEEEEEEE---ECCccHHH---HHHHHHHHHHcCCCEEEEEeeeecCCCcccccccCCCC
Confidence            1234566667778888889877654443   23222222   5666666777888876641      11      22445


Q ss_pred             HHHHHHHHHHHHhhCCCCeE
Q 015894          276 PGTVIPMLEAVLDAVPVDKL  295 (398)
Q Consensus       276 P~~v~~lv~~l~~~~p~~~l  295 (398)
                      ++++.++.+.+++.+|...|
T Consensus       292 ~e~~~~~~~~l~~~l~~~~I  311 (342)
T 2yx0_A          292 HQDIREFAEALVKHLPGYHI  311 (342)
T ss_dssp             HHHHHHHHHHHHTTCTTEEE
T ss_pred             HHHHHHHHHHHHHhccCCce
Confidence            78899999999988875444

>3gd6_A Muconate cycloisomerase; structural genomics, NYSGXRC, target 9375A, divergent enolase, lyase, PSI-2; 1.60A {Oceanobacillus iheyensis HTE831} PDB: 2oqy_A 3es8_A 3es7_A 3fyy_A 3hpf_A*

Probab=81.41  E-value=13  Score=36.51  Aligned_cols=94  Identities=15%  Similarity=0.052  Sum_probs=63.9

Q ss_pred             CCCHHHHHHHHHHHHhcCC--CEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCCHhhHHHHHHcC-CCEEEE
Q 015894          115 IVPAVVKVELIKLLVSSGL--AVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAG-AKEVAI  191 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv--~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n~~~ie~a~~~G-v~~v~i  191 (398)
                      .++.++-+++++.|.+.|+  ..||--.  .+      .|.+ -++.+++..++.+---+.+..+++.+++.| +|.|.+
T Consensus       197 ~~~~~~A~~~~~~l~~~~i~~~~iEqP~--~~------~d~~-~~~~l~~~~~iPIdE~~~~~~~~~~~~~~~~~d~v~~  267 (391)
T 3gd6_A          197 LLNWKDAHRAIKRLTKYDLGLEMIESPA--PR------NDFD-GLYQLRLKTDYPISEHVWSFKQQQEMIKKDAIDIFNI  267 (391)
T ss_dssp             CSCHHHHHHHHHHHTTCCSSCCEEECCS--CT------TCHH-HHHHHHHHCSSCEEEECCCHHHHHHHHHHTCCSEEEE
T ss_pred             CcCHHHHHHHHHHHHhcCCCcceecCCC--Ch------hhHH-HHHHHHHHcCCCcCCCCCCHHHHHHHHHcCCCCEEEE
Confidence            4789999999999999999  9999532  11      2443 344555433455522335788898888866 688877


Q ss_pred             eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEE
Q 015894          192 FASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVR  230 (398)
Q Consensus       192 ~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~  230 (398)
                      =..             +--.+....++++.|+++|+.+.
T Consensus       268 k~~-------------~~GGit~~~~ia~~A~~~gi~~~  293 (391)
T 3gd6_A          268 SPV-------------FIGGLTSAKKAAYAAEVASKDVV  293 (391)
T ss_dssp             CHH-------------HHTSHHHHHHHHHHHHHTTCEEE
T ss_pred             Cch-------------hcCCHHHHHHHHHHHHHcCCEEE
Confidence            221             11135667788999999999876

>4ab4_A Xenobiotic reductase B; oxidoreductase, OLD yellow enzyme; HET: FMN TNL EDO; 1.50A {Pseudomonas putida KT2440}

Probab=81.41  E-value=31  Score=33.83  Aligned_cols=124  Identities=12%  Similarity=0.079  Sum_probs=78.1

Q ss_pred             CCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecC--------------CCC---------------C----CCCHH---
Q 015894          205 NCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGC--------------PVE---------------G----MVPPS---  248 (398)
Q Consensus       205 ~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~--------------~~~---------------~----r~~~~---  248 (398)
                      +...++.++..+++++.+++.|-.+...|... |-              |-.               .    ..+.+   
T Consensus        71 gi~~d~~i~~~k~l~~avH~~G~~i~~QL~H~-Gr~~~~~~~~g~~~vapS~i~~~~~~~~~~~~~~~~~pr~mt~~eI~  149 (362)
T 4ab4_A           71 GIWNDEQVRGWNNVTKAVHAAGGRIFLQLWHV-GRISHPSYLNGELPVAPSAIQPKGHVSLVRPLSDYPTPRALETEEIN  149 (362)
T ss_dssp             BCSSHHHHHHHHHHHHHHHHTTCCEEEEEECC-TTSCCGGGTTTCCCEESSCCCCSSBCSSCSSCCBCCCCEECCHHHHH
T ss_pred             CcCCHHHHHHHHHHHHHHHhcCCEEEEEeccC-cccccccccCCCcccCCCCCCCCccccccccccCCCCCCcCCHHHHH
Confidence            33445678888999999999999887777652 10              000               0    01222   


Q ss_pred             ----HHHHHHHHHHhCCCCEEEEc-------------------cCcCcC---CHHHHHHHHHHHHhhCCCCeEEEEeCCc
Q 015894          249 ----KVAYVSKQLYDMGCSEISLG-------------------DTIGVG---TPGTVIPMLEAVLDAVPVDKLAVHFHDT  302 (398)
Q Consensus       249 ----~l~~~a~~l~~~Gad~I~L~-------------------DT~G~~---~P~~v~~lv~~l~~~~p~~~l~~H~Hnd  302 (398)
                          .+.+.++.+.++|.|.|-|-                   |-.|..   .+.-+.++|+++|+.++..+|++-.+-+
T Consensus       150 ~ii~~f~~AA~~a~~aGfDgVEih~a~GYLl~QFLSp~~N~RtD~yGGslenR~rf~~eiv~aVr~~vg~~~v~vRls~~  229 (362)
T 4ab4_A          150 DIVEAYRSGAENAKAAGFDGVEIHGANGYLLDQFLQSSTNQRTDRYGGSLENRARLLLEVTDAAIEVWGAQRVGVHLAPR  229 (362)
T ss_dssp             HHHHHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCGGGEEEEECTT
T ss_pred             HHHHHHHHHHHHHHHcCCCEEEECCcCccHHHhhcCCccccccCCCCCchhhHHHHHHHHHHHHHHhcCCCceEEEeecc
Confidence                44455667788999988773                   333432   2345778999999988633788876643


Q ss_pred             c---c--------hHHHHHHHHHHhCCCEEeeccccCC
Q 015894          303 Y---G--------QALSNILASLQMGISTVDSSVSGLG  329 (398)
Q Consensus       303 ~---G--------lA~ANalaAl~aGa~~VD~Sv~GlG  329 (398)
                      -   |        .++.-+.+.-++|++.|+++-...|
T Consensus       230 ~~~~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~~  267 (362)
T 4ab4_A          230 ADAHDMGDADRAETFTYVARELGKRGIAFICSREREAD  267 (362)
T ss_dssp             CCSSSCCCTTHHHHHHHHHHHHHHTTCSEEEEECCCCT
T ss_pred             ccccccCCCCcHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence            1   1        2333344445689999999875533

>2pgw_A Muconate cycloisomerase; enolase superfamily, octamer, small metabolism, PSI-II, NYSGXRC, structural genomics, PR structure initiative; 1.95A {Sinorhizobium meliloti}

Probab=81.39  E-value=16  Score=35.59  Aligned_cols=95  Identities=11%  Similarity=0.013  Sum_probs=63.0

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEE--eCCHhhHHHHHHcC-CCEEEE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVL--TPNLKGFEAAVAAG-AKEVAI  191 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l--~~n~~~ie~a~~~G-v~~v~i  191 (398)
                      .++.++-+++++.|.+.|++.||-.++  +      .|. +.++.+++..++.+.+=  +.+..+++.+++.| +|.|.+
T Consensus       200 ~~~~~~a~~~~~~l~~~~i~~iEqP~~--~------~~~-~~~~~l~~~~~iPI~~de~i~~~~~~~~~i~~~~~d~v~i  270 (384)
T 2pgw_A          200 GWSVHDAINMCRKLEKYDIEFIEQPTV--S------WSI-PAMAHVREKVGIPIVADQAAFTLYDVYEICRQRAADMICI  270 (384)
T ss_dssp             CCCHHHHHHHHHHHGGGCCSEEECCSC--T------TCH-HHHHHHHHHCSSCEEESTTCCSHHHHHHHHHTTCCSEEEE
T ss_pred             CCCHHHHHHHHHHHHhcCCCEEeCCCC--h------hhH-HHHHHHHhhCCCCEEEeCCcCCHHHHHHHHHcCCCCEEEE
Confidence            468899999999999999999995431  1      233 34445553333433321  23678899888876 788877


Q ss_pred             eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEE
Q 015894          192 FASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRG  231 (398)
Q Consensus       192 ~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~  231 (398)
                      =..             +--.+....++++.|+++|+.+.+
T Consensus       271 k~~-------------~~GGit~~~~i~~~A~~~g~~~~~  297 (384)
T 2pgw_A          271 GPR-------------EIGGIQPMMKAAAVAEAAGLKICI  297 (384)
T ss_dssp             CHH-------------HHTSHHHHHHHHHHHHHTTCCEEE
T ss_pred             cch-------------hhCCHHHHHHHHHHHHHCCCeEee
Confidence            211             011356667888999999998763

>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A

Probab=81.36  E-value=25  Score=32.41  Aligned_cols=163  Identities=12%  Similarity=0.068  Sum_probs=88.4

Q ss_pred             HHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhcc--CCcEEEEeCCHhhHHHHHHcCCCEEEEeccCchHHHh
Q 015894          124 LIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVE--GARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSK  201 (398)
Q Consensus       124 ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~--~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~  201 (398)
                      .++.+.++|.|.|++|.-..       -..+.+.+.++++.  +..+.-+..+...+    ..|+|.+-+..=.|.-   
T Consensus        23 ~~~~~~~~GtD~i~vGGs~g-------vt~~~~~~~v~~ik~~~~Pvvlfp~~~~~v----~~gaD~~l~pslln~~---   88 (228)
T 3vzx_A           23 QLEILCESGTDAVIIGGSDG-------VTEDNVLRMMSKVRRFLVPCVLEVSAIEAI----VPGFDLYFIPSVLNSK---   88 (228)
T ss_dssp             HHHHHHTSSCSEEEECCCSC-------CCHHHHHHHHHHHTTSSSCEEEECSCGGGC----CSCCSEEEEEEETTBS---
T ss_pred             HHHHHHHcCCCEEEECCcCC-------CCHHHHHHHHHHhhccCCCEEEeCCCHHHc----cccCCEEEEeeecCCC---
Confidence            45557899999999996221       12344555555443  33333333455443    3689977664322221   


Q ss_pred             hhcCCCHHHHHHHHHHHHHHHHhCCC-----cE--EEEEeeeecCCCCCC---------CCHHHHHHHHHHHHhCCCCEE
Q 015894          202 SNINCTIEDSLIRYRDVALAARELSI-----PV--RGYLSCVVGCPVEGM---------VPPSKVAYVSKQLYDMGCSEI  265 (398)
Q Consensus       202 ~~~~~s~~~~l~~~~~~v~~ak~~G~-----~v--~~~l~~~fg~~~~~r---------~~~~~l~~~a~~l~~~Gad~I  265 (398)
                       +-.+    .+.   .-++.+|+.|+     ++  ++|+...   |....         .+++.+..++....-+|.+.|
T Consensus        89 -~~~~----i~g---~~~~a~~~~g~~~~~~e~i~~gYivv~---p~s~~~~~~~a~~~~~~e~~~~~a~~a~~~g~~~V  157 (228)
T 3vzx_A           89 -NADW----IVG---MHQKAMKEYGELMSMEEIVAEGYCIAN---PDCKAAALTEADADLNMDDIVAYARVSELLQLPIF  157 (228)
T ss_dssp             -SGGG----TTH---HHHHHHHHHHHHHHHSCEEEEEEEECC---SSSHHHHHTTBCCCCCHHHHHHHHHHHHHTTCSEE
T ss_pred             -Ccch----hhh---HHHHHHHHcCCCCcccceeeeEEEEEC---CCCcceeeecccCCCCHHHHHHHHHHHHHcCCCEE
Confidence             0001    111   11233566674     43  5666642   32211         256888888887877899999


Q ss_pred             EEccCcCcCCHHHHHHHHHHHHhhCCCCeE--EEEeCCccchHHHHHHHHHHhCCCEE
Q 015894          266 SLGDTIGVGTPGTVIPMLEAVLDAVPVDKL--AVHFHDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       266 ~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l--~~H~Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                      ++-= .|.-.   -.++++.+++..+++|+  ++-.++-      -....+.+||+.|
T Consensus       158 Yld~-sG~~~---~~~~i~~i~~~~~~~Pv~vGGGI~t~------e~a~~~~~gAD~V  205 (228)
T 3vzx_A          158 YLEY-SGVLG---DIEAVKKTKAVLETSTLFYGGGIKDA------ETAKQYAEHADVI  205 (228)
T ss_dssp             EEEC-TTSCC---CHHHHHHHHHHCSSSEEEEESSCCSH------HHHHHHHTTCSEE
T ss_pred             EecC-CCCcC---CHHHHHHHHHhcCCCCEEEeCCCCCH------HHHHHHHhCCCEE
Confidence            8765 56432   36778888887633344  4444432      1222223699865

>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A

Probab=81.23  E-value=11  Score=35.50  Aligned_cols=15  Identities=20%  Similarity=0.102  Sum_probs=9.7

Q ss_pred             CCCCccHHHHHHHHH
Q 015894          337 ASGNVATEDVVYMLN  351 (398)
Q Consensus       337 raGNa~lE~vv~~L~  351 (398)
                      ..+|..-+.++...+
T Consensus       195 ~~an~~P~~~~~l~~  209 (288)
T 2nuw_A          195 SFTNFIPEVIVKQRD  209 (288)
T ss_dssp             GGGGTCHHHHHHHHH
T ss_pred             cHHHhCHHHHHHHHH
Confidence            366777777766554

>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A

Probab=81.19  E-value=4.1  Score=39.42  Aligned_cols=69  Identities=13%  Similarity=0.237  Sum_probs=44.4

Q ss_pred             HHHHHHHHHhCCCCEEEEccCcCc---CCHHHHHHHH----HHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894          250 VAYVSKQLYDMGCSEISLGDTIGV---GTPGTVIPML----EAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD  322 (398)
Q Consensus       250 l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv----~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD  322 (398)
                      +.++++...++|++.|.+.|+.|.   ++|...++++    +.+.+.+...+ -+|+.-+.+.-+   -.-.+.|++.++
T Consensus       192 ~~~~~~~qi~aGad~i~i~D~~a~~~~lsp~~f~~f~~p~~k~i~~~~~~~~-iih~~g~~~~~l---~~~~~~g~d~i~  267 (348)
T 4ay7_A          192 SIIYANAMVEAGADVIAIADPVASPDLMSPDSFRQFLKSRLQKFASSVNSVT-VLHICGNVNPIL---SDMADCGFEGLS  267 (348)
T ss_dssp             HHHHHHHHHHHTCSEEEEECGGGSTTTSCHHHHHHHHHHHHHHHHHHSSSEE-EEECCSCCHHHH---HHHHTSCCSEEE
T ss_pred             HHHHHHHHHhcCCCcceeeccccccccCCHHHHHHHhhHHHHHHHhhccCCc-EEEecCCcHHHH---HHHHHhcccccc
Confidence            334555666789999999999875   8898877654    45555566543 467765433222   222368988764

>2x7v_A Probable endonuclease 4; DNA repair protein, metal-binding, hydrolase, DNA damage, DN; 2.30A {Thermotoga maritima MSB8} PDB: 2x7w_A*

Probab=81.09  E-value=11  Score=34.28  Aligned_cols=122  Identities=8%  Similarity=0.013  Sum_probs=59.5

Q ss_pred             hhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc---EEEEEee--eecCCCCC--CCCHH
Q 015894          176 KGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIP---VRGYLSC--VVGCPVEG--MVPPS  248 (398)
Q Consensus       176 ~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~---v~~~l~~--~fg~~~~~--r~~~~  248 (398)
                      +-++.+.+.|.+.|.++... +.. -.....+.    +.+.++.+.+++.|++   +.+...+  .++.++..  ....+
T Consensus        16 ~~l~~~~~~G~~~iEl~~~~-~~~-~~~~~~~~----~~~~~~~~~l~~~gl~~~~~~~h~~~~~~~~~~~~~~r~~~~~   89 (287)
T 2x7v_A           16 RVPQDTVNIGGNSFQIFPHN-ARS-WSAKLPSD----EAATKFKREMKKHGIDWENAFCHSGYLINLASPKDDIWQKSVE   89 (287)
T ss_dssp             GHHHHHHHTTCSEEEECSCC-CSS-SCCCCCCH----HHHHHHHHHHHHHTCCGGGEEEECCTTCCTTCSSHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEeCCC-ccc-ccccCCCH----HHHHHHHHHHHHcCCCcceeEEecccccccCCCCHHHHHHHHH
Confidence            34678888999988886421 100 00001121    2234555667788887   3321111  01111100  01124


Q ss_pred             HHHHHHHHHHhCCCCEEEEcc--CcCcCCHHHHHHHHHHHHh---hCCCCeEEEEeCCcc
Q 015894          249 KVAYVSKQLYDMGCSEISLGD--TIGVGTPGTVIPMLEAVLD---AVPVDKLAVHFHDTY  303 (398)
Q Consensus       249 ~l~~~a~~l~~~Gad~I~L~D--T~G~~~P~~v~~lv~~l~~---~~p~~~l~~H~Hnd~  303 (398)
                      .+.+.++.+.++|++.|.+.=  ..+.........+++.+++   ...++.|.+|.|+..
T Consensus        90 ~~~~~i~~A~~lG~~~v~~~~g~~~~~~~~~~~~~~~~~l~~l~~~~~gv~l~lEn~~~~  149 (287)
T 2x7v_A           90 LLKKEVEICRKLGIRYLNIHPGSHLGTGEEEGIDRIVRGLNEVLNNTEGVVILLENVSQK  149 (287)
T ss_dssp             HHHHHHHHHHHHTCCEEEECCEECTTSCHHHHHHHHHHHHHHHHTTCCSCEEEEECCCCC
T ss_pred             HHHHHHHHHHHcCCCEEEEecCCCCCCCHHHHHHHHHHHHHHHHcccCCCEEEEeCCCCC
Confidence            566677777788998887621  1111112233344444433   324577888888653

>3obe_A Sugar phosphate isomerase/epimerase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.70A {Parabacteroides distasonis}

Probab=81.04  E-value=7.6  Score=36.53  Aligned_cols=120  Identities=11%  Similarity=0.055  Sum_probs=66.1

Q ss_pred             hHHHHHHcCCCEEEEecc-CchHHHhhhcCCCHHHH-HHHHHHHHHHHHhCCCcEEEEEeeeecCCCCC--C----CCHH
Q 015894          177 GFEAAVAAGAKEVAIFAS-ASESFSKSNINCTIEDS-LIRYRDVALAARELSIPVRGYLSCVVGCPVEG--M----VPPS  248 (398)
Q Consensus       177 ~ie~a~~~Gv~~v~i~~~-~Sd~~~~~~~~~s~~~~-l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~--r----~~~~  248 (398)
                      -++.+.++|.+.|-++.. .+..   ...+.+++.. .+.+.++.+.+++.|+.+.. +.  ++.+...  .    ...+
T Consensus        41 ~l~~aa~~G~~~VEl~~~~~~~~---~~~~~~p~~~~~~~~~~l~~~l~~~GL~i~~-~~--~~~~~~~~~~~~~~~~~~  114 (305)
T 3obe_A           41 GLNRLAKAGYTDLEIFGYREDTG---KFGDYNPKNTTFIASKDYKKMVDDAGLRISS-SH--LTPSLREYTKENMPKFDE  114 (305)
T ss_dssp             HHHHHHHHTCCEEEECCBCTTTC---CBCCC----CCCBCHHHHHHHHHHTTCEEEE-EB--CCCSCCCCCGGGHHHHHH
T ss_pred             HHHHHHHcCCCEEEecccccccc---cccCcCcccccccCHHHHHHHHHHCCCeEEE-ee--ccccccccchhhHHHHHH
Confidence            467888899999998743 0000   0012211100 01234556677889998752 22  1111110  0    1134


Q ss_pred             HHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhC-----CCCeEEEEeCCc
Q 015894          249 KVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAV-----PVDKLAVHFHDT  302 (398)
Q Consensus       249 ~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~-----p~~~l~~H~Hnd  302 (398)
                      .+.+.++.+.++|++.|.++-.-...++.....+++.+++..     -++.|.+|.|+.
T Consensus       115 ~~~~~i~~A~~lG~~~v~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lEn~~~  173 (305)
T 3obe_A          115 FWKKATDIHAELGVSCMVQPSLPRIENEDDAKVVSEIFNRAGEITKKAGILWGYHNHSN  173 (305)
T ss_dssp             HHHHHHHHHHHHTCSEEEECCCCCCSSHHHHHHHHHHHHHHHHHHHTTTCEEEEECCSG
T ss_pred             HHHHHHHHHHHcCCCEEEeCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCEEEEecCcc
Confidence            666778888889999998863222235556655555555432     257899999985

>2qr6_A IMP dehydrogenase/GMP reductase; NP_599840.1, G reductase domain, structural genomics, joint center for STR genomics, JCSG; HET: MSE; 1.50A {Corynebacterium glutamicum atcc 13032}

Probab=81.02  E-value=7.4  Score=38.35  Aligned_cols=93  Identities=12%  Similarity=0.075  Sum_probs=54.1

Q ss_pred             HHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccC---cCcCCHHHHHHHHHHHHhhCCC
Q 015894          216 RDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDT---IGVGTPGTVIPMLEAVLDAVPV  292 (398)
Q Consensus       216 ~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT---~G~~~P~~v~~lv~~l~~~~p~  292 (398)
                      .+.++.+++.|+.+.+.+.     +       ....+.++.+.+.|++.+.+--.   .+...|.....-+..+++.++ 
T Consensus       145 ~~~i~~~~~~g~~v~~~v~-----~-------~~~~e~a~~~~~agad~i~i~~~~~~~~~~~~~~~~~~i~~l~~~~~-  211 (393)
T 2qr6_A          145 SERIAQVRDSGEIVAVRVS-----P-------QNVREIAPIVIKAGADLLVIQGTLISAEHVNTGGEALNLKEFIGSLD-  211 (393)
T ss_dssp             HHHHHHHHHTTSCCEEEEC-----T-------TTHHHHHHHHHHTTCSEEEEECSSCCSSCCCC-----CHHHHHHHCS-
T ss_pred             HHHHHHHhhcCCeEEEEeC-----C-------ccHHHHHHHHHHCCCCEEEEeCCccccccCCCcccHHHHHHHHHhcC-
Confidence            4567788888887754332     1       11234566677889998876321   123334212223566777664 


Q ss_pred             CeEEEEeCCccchHHHHHHHHHHhCCCEEeecc
Q 015894          293 DKLAVHFHDTYGQALSNILASLQMGISTVDSSV  325 (398)
Q Consensus       293 ~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv  325 (398)
                      +|+.+-    ..+...-+..++++||+.|.++.
T Consensus       212 ~pvi~g----gi~t~e~a~~~~~~Gad~i~vg~  240 (393)
T 2qr6_A          212 VPVIAG----GVNDYTTALHMMRTGAVGIIVGG  240 (393)
T ss_dssp             SCEEEE----CCCSHHHHHHHHTTTCSEEEESC
T ss_pred             CCEEEC----CcCCHHHHHHHHHcCCCEEEECC
Confidence            456662    12345567888899999999954

>3khd_A Pyruvate kinase; malaria, structural genomics, structural GE consortium, SGC, transferase; 2.70A {Plasmodium falciparum 3D7}

Probab=80.75  E-value=20  Score=37.11  Aligned_cols=255  Identities=13%  Similarity=0.104  Sum_probs=144.3

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-cCCcEEEEeCCHhhH---HHHHHcCCCEEE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-EGARFPVLTPNLKGF---EAAVAAGAKEVA  190 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~~~~l~~l~~n~~~i---e~a~~~Gv~~v~  190 (398)
                      .++..++..|.+.-.+.|+|.|=+.|--++      .|..++.+.+.+. .++.+.+-.-+.+++   +.-++. .|.|.
T Consensus       213 ~lTekD~~dl~~f~~~~~vD~Ia~SFVr~a------~Dv~~~r~~l~~~g~~i~IIAKIE~~eav~nldeIl~~-sDGIM  285 (520)
T 3khd_A          213 IISEKDKNDILNFAIPMGCNFIAASFIQSA------DDVRLIRNLLGPRGRHIKIIPKIENIEGIIHFDKILAE-SDGIM  285 (520)
T ss_dssp             SSCHHHHHHHHHTHHHHTCCEEEETTCCSH------HHHHHHHHHHTTTTTTSEEEEEECSHHHHHTHHHHHHH-SSCEE
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEECCCCCH------HHHHHHHHHHHhcCCCCcEEEEECCHHHHHhHHHHHHh-CCcEE
Confidence            367788887878888999999988764332      3444445555432 245666666565544   333333 35555


Q ss_pred             EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEE-EeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc-
Q 015894          191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGY-LSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG-  268 (398)
Q Consensus       191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~-l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~-  268 (398)
                      |.  -.|.    ..-+..++.....+.+++.|+++|..|-+. =+... .-...+.+..++-+++..+. -|+|.|-|. 
T Consensus       286 VA--RGDL----gvEi~~e~vp~~Qk~iI~~c~~aGKPVi~ATQMLeS-Mi~~p~PTRAEvsDVanAVl-dGaDavMLSg  357 (520)
T 3khd_A          286 IA--RGDL----GMEISPEKVFLAQKLMISKCNLQGKPIITATQMLES-MTKNPRPTRAEVTDVANAVL-DGTDCVMLSG  357 (520)
T ss_dssp             EC--HHHH----TTTSCGGGHHHHHHHHHHHHHHHTCCEEECCCCCGG-GGTCSSCCHHHHHHHHHHHH-HTCSEEEESH
T ss_pred             Ec--cccc----cccCCHHHHHHHHHHHHHHHHHcCCCeEEeehhhHH-HhcCCCccHHHHHHHHHHHH-hCCCEEEecc
Confidence            43  2232    222344566666688999999999987521 11110 11123456778888776554 699999994 


Q ss_pred             cCcCcCCHHHHHHHHHHHHhhCC-CCeE--EE-----E--eCCcc--chHHHHHHHHHHhCCC-EEeeccccC-----CC
Q 015894          269 DTIGVGTPGTVIPMLEAVLDAVP-VDKL--AV-----H--FHDTY--GQALSNILASLQMGIS-TVDSSVSGL-----GG  330 (398)
Q Consensus       269 DT~G~~~P~~v~~lv~~l~~~~p-~~~l--~~-----H--~Hnd~--GlA~ANalaAl~aGa~-~VD~Sv~Gl-----Ge  330 (398)
                      .|+-.-.|.+..+++..+....- ....  .+     +  ...+.  ..|.|...+|-..+|. +|-.|-.|-     ..
T Consensus       358 ETA~G~yPveaV~~M~~I~~~aE~~~~~~~~~~~~~~~~~~~~~~~~aia~aa~~~A~~l~a~aIv~~T~SG~TA~~vSr  437 (520)
T 3khd_A          358 ETAGGKFPVEAVTIMSKICLEAEACIDYKLLYQSLVNAIETPISVQEAVARSAVETAESIQASLIIALTETGYTARLIAK  437 (520)
T ss_dssp             HHHSCSCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHSCSCCCHHHHHHHHHHHHHHHTTCSEEEEECSSSHHHHHHHH
T ss_pred             cccCCcCHHHHHHHHHHHHHHHHhhhhhhhhHhhhhhccCCCCCHHHHHHHHHHHHHHhcCCCEEEEECCCcHHHHHHHh
Confidence            67778899888887777765431 1000  00     0  01122  3455555667788888 566676663     22


Q ss_pred             -CCCCCCCCCCccHHHHHHHHHh-CCCC-----CccChHHHHHHHHHHHHHhCCCCCCCccc
Q 015894          331 -CPYAKGASGNVATEDVVYMLNG-LGVR-----TNVDIRKLMIAGDFICKHLGRTSGSKTAI  385 (398)
Q Consensus       331 -cp~a~graGNa~lE~vv~~L~~-~Gi~-----t~iDl~~L~~~~~~v~~~~g~~~~~~~pi  385 (398)
                       .|-+|- -.-.+-+.+...|.- .|+.     ..-|.+.+.+.+....+..|+--+...-+
T Consensus       438 ~RP~~PI-ia~T~~~~~~r~l~L~~GV~p~~~~~~~~~d~~~~~a~~~~~~~g~~~~GD~vV  498 (520)
T 3khd_A          438 YKPSCTI-LALSASDSTVKCLNVHRGVTCIKVGSFQGTDIVIRNAIEIAKQRNMAKVGDSVI  498 (520)
T ss_dssp             TCCSSEE-EEEESCHHHHHHGGGSTTEEEEECCSCCCHHHHHHHHHHHHHHTTSSCTTCEEE
T ss_pred             cCCCCCE-EEEcCCHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHHHHCCCCCCcCEEE
Confidence             222221 113444777776664 3553     22355666666666666666654444433

>3vni_A Xylose isomerase domain protein TIM barrel; D-psicose 3-epimerase, ketohexose; 1.98A {Clostridium cellulolyticum} PDB: 3vnj_A* 3vnl_A* 3vnk_A* 3vnm_A*

Probab=80.63  E-value=21  Score=32.59  Aligned_cols=114  Identities=14%  Similarity=0.015  Sum_probs=61.2

Q ss_pred             hHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCH-------HH
Q 015894          177 GFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPP-------SK  249 (398)
Q Consensus       177 ~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~-------~~  249 (398)
                      -++.+.+.|.+.|-+...-  .     ...+.    +.+.++.+.+++.|+.+............. ..++       +.
T Consensus        22 ~l~~~~~~G~~~vEl~~~~--~-----~~~~~----~~~~~~~~~l~~~gl~i~~~~~~~~~~~l~-~~d~~~r~~~~~~   89 (294)
T 3vni_A           22 YIEKVAKLGFDILEIAASP--L-----PFYSD----IQINELKACAHGNGITLTVGHGPSAEQNLS-SPDPDIRKNAKAF   89 (294)
T ss_dssp             HHHHHHHHTCSEEEEESTT--G-----GGCCH----HHHHHHHHHHHHTTCEEEEEECCCGGGCTT-CSCHHHHHHHHHH
T ss_pred             HHHHHHHcCCCEEEecCcc--c-----CCcCH----HHHHHHHHHHHHcCCeEEEeecCCCCcCCC-CCCHHHHHHHHHH
Confidence            4677888999999887531  0     01121    234456677788999886422111000011 1122       45


Q ss_pred             HHHHHHHHHhCCCCEEEE--ccCcC-----cCC-HHHHHHHHHHHHhh---C--CCCeEEEEeCCc
Q 015894          250 VAYVSKQLYDMGCSEISL--GDTIG-----VGT-PGTVIPMLEAVLDA---V--PVDKLAVHFHDT  302 (398)
Q Consensus       250 l~~~a~~l~~~Gad~I~L--~DT~G-----~~~-P~~v~~lv~~l~~~---~--p~~~l~~H~Hnd  302 (398)
                      +.+.++.+.++|++.|.+  ....|     ... ......+++.+++.   .  -++.|.+|.|+.
T Consensus        90 ~~~~i~~a~~lG~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~lEn~~~  155 (294)
T 3vni_A           90 YTDLLKRLYKLDVHLIGGALYSYWPIDYTKTIDKKGDWERSVESVREVAKVAEACGVDFCLEVLNR  155 (294)
T ss_dssp             HHHHHHHHHHHTCCEEEESTTSCSSCCTTSCCCHHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCT
T ss_pred             HHHHHHHHHHhCCCeeeccccCCCCCcCCCCCCHHHHHHHHHHHHHHHHHHHHHcCCEEEEEecCc
Confidence            666777888889998874  22222     112 23333444333322   1  246799999864

>3f5l_A Beta-glucosidase; beta-alpha-barrels, glycosidase, hydrolase; HET: LB2 MES; 1.37A {Oryza sativa japonica group} PDB: 3aht_A* 3ahv_A* 3f5i_A* 3f5j_A* 3f5k_A* 3f4v_A* 2rgm_A* 2rgl_A* 3scr_A* 3scs_A* 3scp_A* 3scq_A* 3scu_A* 3scn_A* 3sco_A* 3sct_A* 3scv_A* 3scw_A*

Probab=80.61  E-value=3.5  Score=42.28  Aligned_cols=83  Identities=8%  Similarity=-0.026  Sum_probs=61.3

Q ss_pred             HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCC---------CCCC
Q 015894          175 LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPV---------EGMV  245 (398)
Q Consensus       175 ~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~---------~~r~  245 (398)
                      .+|++...++|++.+|+.++=|-++.+- .+.-.++.++.+.++|+.++++|+++.++|.. |..|.         ..|-
T Consensus        76 keDi~lm~elG~~~yRfsIsWsRI~P~g-~g~~n~~Gl~~Y~~lid~l~~~GI~P~vTL~H-~dlP~~L~~~yGGW~nr~  153 (481)
T 3f5l_A           76 KEDVNLMKSLNFDAYRFSISWSRIFPDG-EGRVNQEGVAYYNNLINYLLQKGITPYVNLYH-YDLPLALEKKYGGWLNAK  153 (481)
T ss_dssp             HHHHHHHHHTTCCEEEEECCHHHHCTTS-SSCCCHHHHHHHHHHHHHHHHTTCEEEEESCS-SCCBHHHHHHHCGGGSTT
T ss_pred             HHHHHHHHHcCCCEEEecCcHHHhCcCC-CCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCC-CCCCHHHHHHhCCCCCHH
Confidence            4699999999999999998766655432 33445778999999999999999999887765 44441         2344


Q ss_pred             CHHHHHHHHHHHHh
Q 015894          246 PPSKVAYVSKQLYD  259 (398)
Q Consensus       246 ~~~~l~~~a~~l~~  259 (398)
                      .++.+.++++.+.+
T Consensus       154 ~v~~F~~Ya~~~~~  167 (481)
T 3f5l_A          154 MADLFTEYADFCFK  167 (481)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            46677777776654

>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}

Probab=80.53  E-value=41  Score=32.12  Aligned_cols=144  Identities=16%  Similarity=0.146  Sum_probs=78.0

Q ss_pred             HHHHHHHHHhC-CCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCC
Q 015894          215 YRDVALAAREL-SIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVD  293 (398)
Q Consensus       215 ~~~~v~~ak~~-G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~  293 (398)
                      +.+.++.+++. +..+.+++...         ++ .+.+.++.+.+.|++.|.+.    ...|.   ++++.+++.  ++
T Consensus        65 l~~~i~~i~~~~~~p~gVnl~~~---------~~-~~~~~~~~~~~~g~d~V~l~----~g~p~---~~~~~l~~~--g~  125 (326)
T 3bo9_A           65 LRKAISELRQKTDKPFGVNIILV---------SP-WADDLVKVCIEEKVPVVTFG----AGNPT---KYIRELKEN--GT  125 (326)
T ss_dssp             HHHHHHHHHTTCSSCEEEEEETT---------ST-THHHHHHHHHHTTCSEEEEE----SSCCH---HHHHHHHHT--TC
T ss_pred             HHHHHHHHHHhcCCCEEEEEecc---------CC-CHHHHHHHHHHCCCCEEEEC----CCCcH---HHHHHHHHc--CC
Confidence            44556666665 34565555421         11 13456677788999998872    23564   445566553  34


Q ss_pred             eEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHh-CCCC----CccC-hHHHHHH
Q 015894          294 KLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNG-LGVR----TNVD-IRKLMIA  367 (398)
Q Consensus       294 ~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~-~Gi~----t~iD-l~~L~~~  367 (398)
                      ++..-.++     ...+..+.++|++.|-..=...|+      ..|..+.-+++..+.+ .++.    -||. .+.+.++
T Consensus       126 ~v~~~v~s-----~~~a~~a~~~GaD~i~v~g~~~GG------~~G~~~~~~ll~~i~~~~~iPviaaGGI~~~~dv~~a  194 (326)
T 3bo9_A          126 KVIPVVAS-----DSLARMVERAGADAVIAEGMESGG------HIGEVTTFVLVNKVSRSVNIPVIAAGGIADGRGMAAA  194 (326)
T ss_dssp             EEEEEESS-----HHHHHHHHHTTCSCEEEECTTSSE------ECCSSCHHHHHHHHHHHCSSCEEEESSCCSHHHHHHH
T ss_pred             cEEEEcCC-----HHHHHHHHHcCCCEEEEECCCCCc------cCCCccHHHHHHHHHHHcCCCEEEECCCCCHHHHHHH
Confidence            55554443     344567889999977654222344      4554444455544432 2221    1343 3333332


Q ss_pred             HHHHHHHhCCCCCCCcccccccccccccCC
Q 015894          368 GDFICKHLGRTSGSKTAIALSKTSTANASK  397 (398)
Q Consensus       368 ~~~v~~~~g~~~~~~~pivG~~~f~~~~s~  397 (398)
                         +.      .+..-..+|+..+.|.|++
T Consensus       195 ---l~------~GA~gV~vGs~~~~~~e~~  215 (326)
T 3bo9_A          195 ---FA------LGAEAVQMGTRFVASVESD  215 (326)
T ss_dssp             ---HH------HTCSEEEESHHHHTBSSCC
T ss_pred             ---HH------hCCCEEEechHHHcCcccc
Confidence               22      2456677777776666654

>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A*

Probab=80.42  E-value=39  Score=31.79  Aligned_cols=76  Identities=14%  Similarity=0.067  Sum_probs=35.8

Q ss_pred             HHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC-CCCE--EEEccCcCc-CCHHHHHHHHHHHHhhCCC
Q 015894          217 DVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM-GCSE--ISLGDTIGV-GTPGTVIPMLEAVLDAVPV  292 (398)
Q Consensus       217 ~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~-Gad~--I~L~DT~G~-~~P~~v~~lv~~l~~~~p~  292 (398)
                      +.++.|++.|.....-+     .|.-.+.+.+.+.+..+.+.+. +...  -.++...|. ++|+.+.++.     ..|+
T Consensus        90 ~la~~a~~~Gadavlv~-----~P~y~~~~~~~l~~~f~~va~a~~lPiilYn~P~~tg~~l~~~~~~~La-----~~pn  159 (293)
T 1f6k_A           90 ELGKYATELGYDCLSAV-----TPFYYKFSFPEIKHYYDTIIAETGSNMIVYSIPFLTGVNMGIEQFGELY-----KNPK  159 (293)
T ss_dssp             HHHHHHHHHTCSEEEEE-----CCCSSCCCHHHHHHHHHHHHHHHCCCEEEEECHHHHCCCCCHHHHHHHH-----TSTT
T ss_pred             HHHHHHHhcCCCEEEEC-----CCCCCCCCHHHHHHHHHHHHHhCCCCEEEEECccccCcCCCHHHHHHHh-----cCCC
Confidence            44456666676542111     3443444556555555554442 3332  234555564 4555555542     2455


Q ss_pred             CeEEE-EeCCcc
Q 015894          293 DKLAV-HFHDTY  303 (398)
Q Consensus       293 ~~l~~-H~Hnd~  303 (398)
                      + +++ ....|.
T Consensus       160 I-vgiK~s~gd~  170 (293)
T 1f6k_A          160 V-LGVKFTAGDF  170 (293)
T ss_dssp             E-EEEEECSCCH
T ss_pred             E-EEEEECCCCH
Confidence            3 555 444443

>1gnx_A Beta-glucosidase; hydrolase, glycosyltransferase, family 1 of glycosyl hydrolase; HET: SUC; 1.68A {Streptomyces SP} SCOP: c.1.8.4 PDB: 1gon_A

Probab=80.40  E-value=4.8  Score=41.25  Aligned_cols=83  Identities=12%  Similarity=-0.011  Sum_probs=60.6

Q ss_pred             HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCC--------CCCCC
Q 015894          175 LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPV--------EGMVP  246 (398)
Q Consensus       175 ~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~--------~~r~~  246 (398)
                      .+|++...++|++.+|+.++=+.++.+. .+.-.++.++.+.++|+.++++|+++.+++.. |+.|.        ..|-.
T Consensus        74 ~eDi~lm~~lG~~~yRfsIsWsRI~P~g-~g~~n~~gl~~Y~~lid~l~~~GI~p~vtL~H-~d~P~~L~~~GGw~~r~~  151 (479)
T 1gnx_A           74 REDVALMAELGLGAYRFSLAWPRIQPTG-RGPALQKGLDFYRRLADELLAKGIQPVATLYH-WDLPQELENAGGWPERAT  151 (479)
T ss_dssp             HHHHHHHHHTTCSEEEEECCHHHHSGGG-SSSCCHHHHHHHHHHHHHHHHTTCEEEEEEES-SCCBHHHHHTTCTTSTHH
T ss_pred             HHHHHHHHHcCCCEEEecccHHHhccCC-CCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCC-CcccHHHHhcCCCCCHHH
Confidence            4689999999999999998766665442 23345788999999999999999999888875 44443        12334


Q ss_pred             HHHHHHHHHHHHh
Q 015894          247 PSKVAYVSKQLYD  259 (398)
Q Consensus       247 ~~~l~~~a~~l~~  259 (398)
                      .+.+.++++.+.+
T Consensus       152 v~~F~~ya~~~~~  164 (479)
T 1gnx_A          152 AERFAEYAAIAAD  164 (479)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            5566666665554

>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A*

Probab=80.40  E-value=3.7  Score=40.13  Aligned_cols=72  Identities=15%  Similarity=0.053  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHhCCCCEEEEcc-CcCcCCHHH--------HHHHHHHHH-hhCC----CCeEEEEeCCccchHHHHHHHH
Q 015894          248 SKVAYVSKQLYDMGCSEISLGD-TIGVGTPGT--------VIPMLEAVL-DAVP----VDKLAVHFHDTYGQALSNILAS  313 (398)
Q Consensus       248 ~~l~~~a~~l~~~Gad~I~L~D-T~G~~~P~~--------v~~lv~~l~-~~~p----~~~l~~H~Hnd~GlA~ANalaA  313 (398)
                      +.+.++++...++|++.|.+.| ..|.++|..        +.++++.++ +..|    +.++-+|+..+ +.-+.   .-
T Consensus       197 ~~~~~~~~~~i~aGad~i~i~D~~~~~lsp~~f~ef~~p~~k~i~~~i~~~~~~~g~~~~p~i~~~~G~-~~~l~---~l  272 (367)
T 1r3s_A          197 DALVPYLVGQVVAGAQALQLFESHAGHLGPQLFNKFALPYIRDVAKQVKARLREAGLAPVPMIIFAKDG-HFALE---EL  272 (367)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEEETTGGGSCHHHHHHHTHHHHHHHHHHHHHHHHHTTCCCCCEEEEETTC-GGGHH---HH
T ss_pred             HHHHHHHHHHHHhCCCEEEEecCccccCCHHHHHHHhHHHHHHHHHHHhhhhccccCCCCCeEEEcCCc-HHHHH---HH


Q ss_pred             HHhCCCEEee
Q 015894          314 LQMGISTVDS  323 (398)
Q Consensus       314 l~aGa~~VD~  323 (398)
                      .+.|++.++.
T Consensus       273 ~~~g~d~i~~  282 (367)
T 1r3s_A          273 AQAGYEVVGL  282 (367)
T ss_dssp             TTSSCSEEEC
T ss_pred             HhcCCCEEEe

>2zad_A Muconate cycloisomerase; muconate lactonizing enzyme (MLE), TM0006, struct genomics, NPPSFA; HET: 1PE; 1.60A {Thermotoga maritima} PDB: 3deq_A 3der_A* 3des_A* 3dfy_A

Probab=80.39  E-value=19  Score=34.60  Aligned_cols=93  Identities=11%  Similarity=-0.014  Sum_probs=63.3

Q ss_pred             CCCHHHHHHHHHHHHhcCCC--EEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEE--eCCHhhHHHHHHcC-CCEE
Q 015894          115 IVPAVVKVELIKLLVSSGLA--VVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVL--TPNLKGFEAAVAAG-AKEV  189 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~--~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l--~~n~~~ie~a~~~G-v~~v  189 (398)
                      .++.++-+++++.|.+.|++  .||--.+  +      .|.+ -++.+++..++.+.+=  ..+..+++.+++.| +|.|
T Consensus       192 ~~~~~~a~~~~~~l~~~~i~~~~iE~P~~--~------~~~~-~~~~l~~~~~ipia~dE~~~~~~~~~~~i~~~~~d~v  262 (345)
T 2zad_A          192 GYTQKEAVEFARAVYQKGIDIAVYEQPVR--R------EDIE-GLKFVRFHSPFPVAADESARTKFDVMRLVKEEAVDYV  262 (345)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCCSEEECCSC--T------TCHH-HHHHHHHHSSSCEEESTTCCSHHHHHHHHHHTCCSEE
T ss_pred             CCCHHHHHHHHHHHHhcCCCeeeeeCCCC--c------ccHH-HHHHHHHhCCCCEEEeCCcCCHHHHHHHHHhCCCCEE
Confidence            47889999999999999999  9994331  1      2333 3444443233433321  23678888888876 6777


Q ss_pred             EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEE
Q 015894          190 AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVR  230 (398)
Q Consensus       190 ~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~  230 (398)
                      .+=.             .+ -.+....++++.|+++|+.+.
T Consensus       263 ~ik~-------------~~-GGit~~~~i~~~A~~~g~~~~  289 (345)
T 2zad_A          263 NIKL-------------MK-SGISDALAIVEIAESSGLKLM  289 (345)
T ss_dssp             EECH-------------HH-HHHHHHHHHHHHHHTTTCEEE
T ss_pred             EEec-------------cc-ccHHHHHHHHHHHHHcCCeEE
Confidence            7611             13 457777889999999999875

>3gka_A N-ethylmaleimide reductase; decode biostructures, ssgcid, niaid, targetdb bupsa00093A, structural genomics; HET: FMN; 2.30A {Burkholderia pseudomallei} SCOP: c.1.4.0

Probab=80.37  E-value=25  Score=34.49  Aligned_cols=120  Identities=14%  Similarity=0.061  Sum_probs=76.7

Q ss_pred             HHHHHHHHHHHHHHHHhCCCcEEEEEeeeecC--------------CCC----C---------------CCC-------H
Q 015894          208 IEDSLIRYRDVALAARELSIPVRGYLSCVVGC--------------PVE----G---------------MVP-------P  247 (398)
Q Consensus       208 ~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~--------------~~~----~---------------r~~-------~  247 (398)
                      .++.++..+++++.+++.|-.+...|... |-              |-.    +               ..+       .
T Consensus        82 ~d~~i~~~k~l~~avH~~G~~i~~QL~H~-Gr~~~~~~~~g~~~vapS~i~~~~~~~~~~g~~~~~~pr~mt~~eI~~ii  160 (361)
T 3gka_A           82 SPEQVDGWRLVTDAVHAAGGRIFLQLWHV-GRVSDPVFLDGALPVAPSAIAPGGHVSLVRPQRPYVTPRALELDEIPGVV  160 (361)
T ss_dssp             SHHHHHHHHHHHHHHHHTTCCEEEEEECC-TTSCCGGGTTTCCCEESSSCCCSSBCSSCSSCCBCCCCEECCGGGHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCCeEEEeeccC-CccccccccCCCCcccCCCCCCCCcccccccccCCCCCccCCHHHHHHHH
Confidence            34677888899999999999887777652 10              000    0               011       1


Q ss_pred             HHHHHHHHHHHhCCCCEEEEc-------------------cCcCcC---CHHHHHHHHHHHHhhCCCCeEEEEeCCcc--
Q 015894          248 SKVAYVSKQLYDMGCSEISLG-------------------DTIGVG---TPGTVIPMLEAVLDAVPVDKLAVHFHDTY--  303 (398)
Q Consensus       248 ~~l~~~a~~l~~~Gad~I~L~-------------------DT~G~~---~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~--  303 (398)
                      +.+.+.++.+.++|.|.|-|-                   |-.|..   .+.-+.++++++|+.++..+|++-.+-+-  
T Consensus       161 ~~f~~AA~~A~~aGfDgVEih~a~GYLl~QFLsp~~N~RtD~yGGslenR~rf~~evv~aVr~~vg~~~v~vRls~~~~~  240 (361)
T 3gka_A          161 AAFRRGAENARAAGFDGVEVHGANGYLLDQFLQDSANRRTDAYGGSIENRARLLLEVVDAAIDVWSAARVGVHLAPRGDA  240 (361)
T ss_dssp             HHHHHHHHHHHHTTCSEEEEECCTTSHHHHHHSTTTCCCCSTTSSSHHHHSHHHHHHHHHHHHHHCGGGEEEEECTTCCS
T ss_pred             HHHHHHHHHHHHcCCCEEEECCcCccHHHhccCcccccccCCCCCChhhcHHHHHHHHHHHHHHcCCCeEEEeccccccc
Confidence            345556777888999988773                   333432   23457889999999886337888766431  


Q ss_pred             -c--------hHHHHHHHHHHhCCCEEeeccccC
Q 015894          304 -G--------QALSNILASLQMGISTVDSSVSGL  328 (398)
Q Consensus       304 -G--------lA~ANalaAl~aGa~~VD~Sv~Gl  328 (398)
                       |        .++.-+...-++|++.|+++-...
T Consensus       241 ~g~~~~~~~~~~~~la~~l~~~Gvd~i~v~~~~~  274 (361)
T 3gka_A          241 HTMGDSDPAATFGHVARELGRRRIAFLFARESFG  274 (361)
T ss_dssp             SSCCCSCHHHHHHHHHHHHHHTTCSEEEEECCCS
T ss_pred             CCCCCCCcHHHHHHHHHHHHHcCCCEEEECCCCC
Confidence             1        133334444568999999987553

>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis}

Probab=80.18  E-value=27  Score=33.41  Aligned_cols=76  Identities=8%  Similarity=-0.078  Sum_probs=32.3

Q ss_pred             HHHHHHHhCCCcEEEEEeeeecCCCCC-C-CCHHHHHHHHHHHHh-CCCCE--EEEccC-cCc-CCHHHHHHHHHHHHhh
Q 015894          217 DVALAARELSIPVRGYLSCVVGCPVEG-M-VPPSKVAYVSKQLYD-MGCSE--ISLGDT-IGV-GTPGTVIPMLEAVLDA  289 (398)
Q Consensus       217 ~~v~~ak~~G~~v~~~l~~~fg~~~~~-r-~~~~~l~~~a~~l~~-~Gad~--I~L~DT-~G~-~~P~~v~~lv~~l~~~  289 (398)
                      +.++.|++.|.....  .   -.|.-. + .+.+.+.+..+.+.+ .+...  ..++.. .|. ++|+.+.++    .+.
T Consensus        97 ~la~~a~~~Gadavl--v---~~P~y~~kp~~~~~l~~~f~~ia~a~~lPiilYn~P~~t~g~~l~~~~~~~L----a~~  167 (318)
T 3qfe_A           97 EHINDASVAGANYVL--V---LPPAYFGKATTPPVIKSFFDDVSCQSPLPVVIYNFPGVCNGIDLDSDMITTI----ARK  167 (318)
T ss_dssp             HHHHHHHHHTCSEEE--E---CCCCC---CCCHHHHHHHHHHHHHHCSSCEEEEECCC----CCCCHHHHHHH----HHH
T ss_pred             HHHHHHHHcCCCEEE--E---eCCcccCCCCCHHHHHHHHHHHHhhCCCCEEEEeCCcccCCCCCCHHHHHHH----Hhh
Confidence            445666666765421  1   133222 1 345555555555544 23332  344443 365 445444333    333


Q ss_pred             CCCCeEEE-EeCCc
Q 015894          290 VPVDKLAV-HFHDT  302 (398)
Q Consensus       290 ~p~~~l~~-H~Hnd  302 (398)
                      .|++ +++ ....|
T Consensus       168 ~pnI-vgiKdssgd  180 (318)
T 3qfe_A          168 NPNV-VGVKLTCAS  180 (318)
T ss_dssp             CTTE-EEEEESSCC
T ss_pred             CCCE-EEEEeCCCC
Confidence            5653 555 33444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	398
d1rqba2	303	c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-	1e-41
d1sr9a2	310	c.1.10.5 (A:61-370) 2-isopropylmalate synthase Leu	4e-39
d1nvma2	289	c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolas	5e-26

>d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]} Length = 303

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: HMGL-like
domain: Transcarboxylase 5S subunit, N-terminal domain
species: Propionibacterium freudenreichii shermanii [TaxId: 1752]

 Score =  146 bits (369), Expect = 1e-41
 Identities = 47/281 (16%), Positives = 98/281 (34%), Gaps = 25/281 (8%)

Query: 95  PGFVKIVEVGPRDGLQN-EKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADA 153
           P  V I E+  RD  Q+     +     V     + ++G   VE     +     +  + 
Sbjct: 8   PREVGITELVLRDAHQSLMATRMAMEDMVGACADIDAAGYWSVECWGGATYDSCIRFLNE 67

Query: 154 KDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLI 213
                     +      L          +    + +  +   ++      ++ + E+ + 
Sbjct: 68  DPWERLRTFRKLMPNSRL---------QMLLRGQNLLGYRHYNDEVVDRFVDKSAENGMD 118

Query: 214 RYR--------DVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEI 265
            +R             A         +    +   +  +        ++ QL DMG   I
Sbjct: 119 VFRVFDAMNDPRNMAHAMAAVKKAGKHAQGTICYTISPVHTVEGYVKLAGQLLDMGADSI 178

Query: 266 SLGDTIGVGTPGTVIPMLEAVLDA-VPVDKLAVHFHDTYGQALSNILASLQMGISTVDSS 324
           +L D   +  P     +++A+ D      ++ +H H T G    +++ +++ G+  VD++
Sbjct: 179 ALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVSLMKAIEAGVDVVDTA 238

Query: 325 VSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLM 365
           +S +   P      G+  TE V  ML G G  TN+D  +L 
Sbjct: 239 ISSMSLGP------GHNPTESVAEMLEGTGYTTNLDYDRLH 273

>d1sr9a2 c.1.10.5 (A:61-370) 2-isopropylmalate synthase LeuA, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]} Length = 310

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: HMGL-like
domain: 2-isopropylmalate synthase LeuA, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score =  140 bits (352), Expect = 4e-39
 Identities = 43/300 (14%), Positives = 80/300 (26%), Gaps = 19/300 (6%)

Query: 100 IVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATS-FVSPKWVPQLADAKDVMA 158
              V  RDG Q   + +    K  +  LLV  G   +E      S      + +  +  A
Sbjct: 14  WCAVDLRDGNQALIDPMSPARKRRMFDLLVRMGYKEIEVGFPSASQTDFDFVREIIEQGA 73

Query: 159 AIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASES---------FSKSNINCTIE 209
              +V         P L        +GA    +    S S          +++ +     
Sbjct: 74  IPDDVTIQVLTQCRPELIERTFQACSGAPRAIVHFYNSTSILQRRVVFRANRAEVQAIAT 133

Query: 210 DSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGD 269
           D   +  + A                  G  +E                       +L  
Sbjct: 134 DGARKCVEQAAKYPGTQWRFEYSPESYTGTELEYAKQVCDAVGEVIAPTPERPIIFNLPA 193

Query: 270 TIGVGTPGTVIPMLEAVLDAVPVDKLA---VHFHDTYGQALSNILASLQMGISTVDSSVS 326
           T+ + TP      +E +   +   +     +H H+  G A++        G   ++  + 
Sbjct: 194 TVEMTTPNVYADSIEWMSRNLANRESVILSLHPHNDRGTAVAAAELGFAAGADRIEGCLF 253

Query: 327 GLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIA 386
           G G        +GNV    +   L   GV   +D   +      +          +    
Sbjct: 254 GNG------ERTGNVCLVTLGLNLFSRGVDPQIDFSNIDEIRRTVEYCNQLPVHERHPYG 307

>d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} Length = 289

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: HMGL-like
domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain
species: Pseudomonas sp. [TaxId: 306]

 Score =  103 bits (258), Expect = 5e-26
 Identities = 53/289 (18%), Positives = 103/289 (35%), Gaps = 37/289 (12%)

Query: 98  VKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPK------WVPQLA 151
           + I +V  RDG    ++         + + L  + +  +E       +         +  
Sbjct: 8   LYISDVTLRDGSHAIRHQYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHT 67

Query: 152 DAKDVMAAIQNVEGARFPVL----TPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCT 207
           D + + A    +  A+   L      ++   + A  AGA+ V +    +E+         
Sbjct: 68  DLEYIEAVAGEISHAQIATLLLPGIGSVHDLKNAYQAGARVVRVATHCTEADVSKQHIEY 127

Query: 208 IEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL 267
                         AR L +   G+L          M+P  K+A   K +   G + I +
Sbjct: 128 --------------ARNLGMDTVGFLMM------SHMIPAEKLAEQGKLMESYGATCIYM 167

Query: 268 GDTIGVGTPGTVIPMLEAVLDAVPVDKL-AVHFHDTYGQALSNILASLQMGISTVDSSVS 326
            D+ G  +   +   + A    +  +    +H H      ++N + +++ G   VD+S++
Sbjct: 168 ADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEGCDRVDASLA 227

Query: 327 GLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHL 375
           G+G         GN   E  + +   LG     D+  LM A D I + L
Sbjct: 228 GMGAGA------GNAPLEVFIAVAERLGWNHGTDLYTLMDAADDIVRPL 270

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	398
d1rqba2	303	Transcarboxylase 5S subunit, N-terminal domain {Pr	100.0
d1nvma2	289	4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d	100.0
d1sr9a2	310	2-isopropylmalate synthase LeuA, catalytic domain	100.0
d1r30a_	312	Biotin synthase {Escherichia coli [TaxId: 562]}	98.18
d1mxsa_	216	KDPG aldolase {Pseudomonas putida [TaxId: 303]}	97.24
d1wbha1	213	KDPG aldolase {Escherichia coli [TaxId: 562]}	97.01
d2q02a1	271	Putative cytoplasmic protein STM4435 {Salmonella t	97.0
d1wa3a1	202	KDPG aldolase {Thermotoga maritima [TaxId: 2336]}	96.95
d1ub3a_	211	Deoxyribose-phosphate aldolase DeoC {Thermus therm	96.94
d1rvga_	305	Fructose-bisphosphate aldolase (FBP aldolase) {The	96.88
d1geqa_	248	Trp synthase alpha-subunit {Archaeon Pyrococcus fu	96.87
d1mzha_	225	Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli	96.86
d1vhca_	212	Hypothetical protein HI0047 {Haemophilus influenza	96.85
d1ojxa_	251	Archaeal fructose 1,6-bisphosphate aldolase {Archa	96.68
d1o0ya_	251	Deoxyribose-phosphate aldolase DeoC {Thermotoga ma	96.63
d1n7ka_	234	Deoxyribose-phosphate aldolase DeoC {Archaeon Aero	96.6
d1p1xa_	250	Deoxyribose-phosphate aldolase DeoC {Escherichia c	96.11
d1rd5a_	261	Trp synthase alpha-subunit {Maize (Zea mays) [TaxI	96.1
d1gqna_	252	Type I 3-dehydroquinate dehydratase {Salmonella ty	96.08
d1ad1a_	264	Dihydropteroate synthetase {Staphylococcus aureus	95.77
d1gvfa_	284	Tagatose-1,6-bisphosphate aldolase {Escherichia co	95.36
d1qopa_	267	Trp synthase alpha-subunit {Salmonella typhimurium	95.18
d1gtea2	312	Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su	95.16
d1h1ya_	220	D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sa	95.14
d1ujpa_	271	Trp synthase alpha-subunit {Thermus thermophilus [	94.36
d1ajza_	282	Dihydropteroate synthetase {Escherichia coli [TaxI	94.05
d1tx2a_	273	Dihydropteroate synthetase {Bacillus anthracis [Ta	93.8
d1yx1a1	250	Hypothetical protein PA2260 {Pseudomonas aeruginos	93.76
d1xp3a1	297	Endonuclease IV {Bacillus anthracis [TaxId: 1392]}	93.41
d1vcva1	226	Deoxyribose-phosphate aldolase DeoC {Archaeon Pyro	93.38
d1dosa_	358	Fructose-bisphosphate aldolase (FBP aldolase) {Esc	93.33
d1to3a_	291	Putative aldolase YihT {Salmonella typhimurium [Ta	93.32
d2flia1	217	D-ribulose-5-phosphate 3-epimerase {Streptococcus	93.26
d1i60a_	278	Hypothetical protein IolI {Bacillus subtilis [TaxI	93.22
d1vlia2	295	Spore coat polysaccharide biosynthesis protein Sps	93.08
d1z41a1	337	NADPH dehydrogenase NamA {Bacillus subtilis [TaxId	92.87
d2a4aa1	256	Fructose-1,6-bisphosphate aldolase {Plasmodium yoe	92.77
d1ub3a_	211	Deoxyribose-phosphate aldolase DeoC {Thermus therm	92.6
d1m5wa_	242	Pyridoxine 5'-phosphate synthase {Escherichia coli	92.56
d1xxxa1	296	Dihydrodipicolinate synthase {Mycobacterium tuberc	92.54
d2g0wa1	275	Hypothetical protein Lmo2234 {Listeria monocytogen	92.51
d1vrda1	330	Inosine monophosphate dehydrogenase (IMPDH) {Therm	92.3
d1gvfa_	284	Tagatose-1,6-bisphosphate aldolase {Escherichia co	92.15
d1mzha_	225	Deoxyribose-phosphate aldolase DeoC {Aquifex aeoli	91.77
d1vyra_	363	Pentaerythritol tetranirate reductase {Enterobacte	91.76
d1eyea_	270	Dihydropteroate synthetase {Mycobacterium tubercul	91.57
d1tqxa_	221	D-ribulose-5-phosphate 3-epimerase {Plasmodium fal	91.46
d1vr6a1	338	3-deoxy-D-arabino-heptulosonate-7-phosphate syntha	91.42
d1xkya1	292	Dihydrodipicolinate synthase {Bacillus anthracis [	91.42
d1k77a_	260	Hypothetical protein YgbM (EC1530) {Escherichia co	91.38
d1qtwa_	285	Endonuclease IV {Escherichia coli [TaxId: 562]}	91.33
d1rvga_	305	Fructose-bisphosphate aldolase (FBP aldolase) {The	91.3
d1hl2a_	295	N-acetylneuraminate lyase {Escherichia coli [TaxId	90.63
d1tv8a_	327	Molybdenum cofactor biosynthesis protein A MoaA {S	90.46
d1olta_	441	Oxygen-independent coproporphyrinogen III oxidase	90.09
d1rpxa_	230	D-ribulose-5-phosphate 3-epimerase {Potato (Solanu	89.93
d1o5ka_	295	Dihydrodipicolinate synthase {Thermotoga maritima	89.48
d1qwga_	251	(2r)-phospho-3-sulfolactate synthase ComA {Archaeo	89.42
d1ps9a1	330	2,4-dienoyl-CoA reductase, N-terminal domain {Esch	89.09
d1o0ya_	251	Deoxyribose-phosphate aldolase DeoC {Thermotoga ma	88.92
d2zdra2	280	Capsule biosynthesis protein SiaC, N-terminal doma	88.75
d2a6na1	292	Dihydrodipicolinate synthase {Escherichia coli [Ta	88.48
d1f74a_	293	N-acetylneuraminate lyase {Haemophilus influenzae	87.93
d1xxxa1	296	Dihydrodipicolinate synthase {Mycobacterium tuberc	87.79
d1hl2a_	295	N-acetylneuraminate lyase {Escherichia coli [TaxId	87.77
d2j78a1	443	Beta-glucosidase A {Thermotoga maritima [TaxId: 23	86.28
d1tqja_	221	D-ribulose-5-phosphate 3-epimerase {Synechocystis	85.93
d1vffa1	423	Beta-glucosidase A {Archaeon Pyrococcus horikoshii	85.87
d1f6ya_	262	Methyltetrahydrofolate: corrinoid/iron-sulfur prot	85.65
d1wcga1	462	Thioglucosidase {Cabbage aphid (Brevicoryne brassi	85.14
d1y0ea_	222	Putative N-acetylmannosamine-6-phosphate 2-epimera	85.14
d1f74a_	293	N-acetylneuraminate lyase {Haemophilus influenzae	85.03
d1q6oa_	213	3-keto-L-gulonate 6-phosphate decarboxylase {Esche	85.03
d7reqa2	168	Methylmalonyl-CoA mutase alpha subunit, C-terminal	84.85
d1twda_	247	Copper homeostasis protein CutC {Shigella flexneri	84.83
d1m3ua_	262	Ketopantoate hydroxymethyltransferase PanB {Escher	84.69
d1sfla_	236	Type I 3-dehydroquinate dehydratase {Staphylococcu	84.46
d2a6na1	292	Dihydrodipicolinate synthase {Escherichia coli [Ta	83.93
d1e4ia_	447	Beta-glucosidase A {Bacillus polymyxa [TaxId: 1406	83.69
d3bofa1	260	Cobalamin-dependent methionine synthase MetH, C-te	83.58
d1xkya1	292	Dihydrodipicolinate synthase {Bacillus anthracis [	83.4
d1lt7a_	361	Betaine-homocysteine S-methyltransferase {Human (H	83.38
d1lt7a_	361	Betaine-homocysteine S-methyltransferase {Human (H	83.37
d1ug6a_	426	Beta-glucosidase A {Thermus thermophilus [TaxId: 2	82.64
d1yxya1	230	Putative N-acetylmannosamine-6-phosphate 2-epimera	82.38
d1qpoa1	169	Quinolinic acid phosphoribosyltransferase (Nicotin	81.99
d1cbga_	490	Plant beta-glucosidase (myrosinase) {Creeping whit	81.73
d1j93a_	343	Uroporphyrinogen decarboxylase, UROD {Tobacco (Nic	81.25
d1yx1a1	250	Hypothetical protein PA2260 {Pseudomonas aeruginos	80.88
d2a4aa1	256	Fructose-1,6-bisphosphate aldolase {Plasmodium yoe	80.77

>d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: HMGL-like
domain: Transcarboxylase 5S subunit, N-terminal domain
species: Propionibacterium freudenreichii shermanii [TaxId: 1752]

Probab=100.00  E-value=6.9e-55  Score=422.09  Aligned_cols=282  Identities=18%  Similarity=0.220  Sum_probs=244.9

Q ss_pred             hhccCCCCccEEEeCCCcccCCCC-CCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCC--CHHHHHHHHH-hcc
Q 015894           89 KLLGRVPGFVKIVEVGPRDGLQNE-KNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLA--DAKDVMAAIQ-NVE  164 (398)
Q Consensus        89 ~~~~~~p~~I~i~D~TLRDG~Q~~-~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~--D~~~v~~~i~-~~~  164 (398)
                      ++...+|++|+|+|||||||+|+. +..|++++|++|++.|+++||+.||+|+|++++..|++.  +.++....+. ..+
T Consensus         2 ~~~~~~p~~i~I~D~tlRDG~Qs~~~~~~~~~~ki~i~~~L~~~Gv~~IEvg~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (303)
T d1rqba2           2 EIEVSEPREVGITELVLRDAHQSLMATRMAMEDMVGACADIDAAGYWSVECWGGATYDSCIRFLNEDPWERLRTFRKLMP   81 (303)
T ss_dssp             CCCCCCSEECEEEECTTTHHHHHHSTTCCCGGGTGGGHHHHHHTTCSEEEEEETTHHHHHHHTSCCCHHHHHHHHHHHCT
T ss_pred             CccCCCCCeeEEEECCCcccccCCCCcCCCHHHHHHHHHHHHHcCCCEEEeCCCcChHHHHHHhcCchHHHHHHHHhhhh
Confidence            466789999999999999999985 567999999999999999999999999999887777664  4555555554 567


Q ss_pred             CCcEEEEeCCHh--------------hHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEE
Q 015894          165 GARFPVLTPNLK--------------GFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVR  230 (398)
Q Consensus       165 ~~~l~~l~~n~~--------------~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~  230 (398)
                      +.++.++.+..+              .+......+.+.+++....++              ++.+..+++.+++.|..+.
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~--------------~~~~~~~~~~~~~~g~~~~  147 (303)
T d1rqba2          82 NSRLQMLLRGQNLLGYRHYNDEVVDRFVDKSAENGMDVFRVFDAMND--------------PRNMAHAMAAVKKAGKHAQ  147 (303)
T ss_dssp             TSCEEEEECGGGTTSSSCCCHHHHHHHHHHHHHTTCCEEEECCTTCC--------------THHHHHHHHHHHHTTCEEE
T ss_pred             hHHHHHHhcccccccccccchhhhHHHHHHHHHhhhhHHhhhhhHHH--------------HHHHHHHHHHHHHcCCeEE
Confidence            788888775211              234556789999998766544              3556678899999999998


Q ss_pred             EEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhC-CCCeEEEEeCCccchHHHH
Q 015894          231 GYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAV-PVDKLAVHFHDTYGQALSN  309 (398)
Q Consensus       231 ~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~-p~~~l~~H~Hnd~GlA~AN  309 (398)
                      +++++.    +..+++++++.++++.+.++|+++|+|+||+|.++|.+|.++++.+++++ |+++|++|+|||+|||+||
T Consensus       148 ~~~~~~----~~~~~~~~~~~~~~~~~~~~G~~~i~l~DT~G~~~P~~v~~li~~l~~~~~~~i~i~~H~Hnd~Gla~AN  223 (303)
T d1rqba2         148 GTICYT----ISPVHTVEGYVKLAGQLLDMGADSIALKDMAALLKPQPAYDIIKAIKDTYGQKTQINLHCHSTTGVTEVS  223 (303)
T ss_dssp             EEEECC----CSTTCCHHHHHHHHHHHHHTTCSEEEEEETTCCCCHHHHHHHHHHHHHHHCTTCCEEEEEBCTTSCHHHH
T ss_pred             EEEEec----CCCCCCHHHHHHHHHHHHhcCCcEEeecCccchhhhHHHHHHHHHHHhhcCCcccceeccCchHHHHHHH
Confidence            888754    34567899999999999999999999999999999999999999999998 6889999999999999999


Q ss_pred             HHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCCCCC-CCcccccc
Q 015894          310 ILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSG-SKTAIALS  388 (398)
Q Consensus       310 alaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~~~~-~~~pivG~  388 (398)
                      +++|+++||++||+|++||||      |+||++||+|+.+|+.+|++|++|+++|.+++++++++...-.| .++|+||.
T Consensus       224 ~laA~~aG~~~id~ti~GlG~------~~GN~~te~lv~~L~~~g~~t~idl~~L~~i~~~~~~ir~~y~~~~~~~~v~~  297 (303)
T d1rqba2         224 LMKAIEAGVDVVDTAISSMSL------GPGHNPTESVAEMLEGTGYTTNLDYDRLHKIRDHFKAIRPKYKKFESKTLVDT  297 (303)
T ss_dssp             HHHHHHTTCSEEEEBCGGGCS------TTSBCBHHHHHHHTTTSSEECCCCHHHHHHHHHHHHHHGGGGGGGCCSCSCCC
T ss_pred             HHHHHHcCCCEEEECCccCCC------CCCCccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhhcccccCCCCCh
Confidence            999999999999999999999      88999999999999999999999999999999999999765445 47899999


Q ss_pred             ccccccc
Q 015894          389 KTSTANA  395 (398)
Q Consensus       389 ~~f~~~~  395 (398)
                      ++|+ |+
T Consensus       298 ~~~~-h~  303 (303)
T d1rqba2         298 SIFK-SQ  303 (303)
T ss_dssp             THHH-HC
T ss_pred             HHhc-cC
Confidence            9999 96

>d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: HMGL-like
domain: 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain
species: Pseudomonas sp. [TaxId: 306]

Probab=100.00  E-value=2.7e-53  Score=408.23  Aligned_cols=267  Identities=19%  Similarity=0.238  Sum_probs=232.2

Q ss_pred             CccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCc--ccCC---CCHHHHHHHHH-hccCCcEE
Q 015894           96 GFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKW--VPQL---ADAKDVMAAIQ-NVEGARFP  169 (398)
Q Consensus        96 ~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~--~p~~---~D~~~v~~~i~-~~~~~~l~  169 (398)
                      ++|+|+|||||||+|+.++.|++++|++|++.|+++||++||+|+++.++.  .++.   ....+....+. ..++..+.
T Consensus         6 kkI~I~D~TlRDG~Q~~~~~~s~e~k~~i~~~L~~~Gv~~IEvG~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~i~   85 (289)
T d1nvma2           6 KKLYISDVTLRDGSHAIRHQYTLDDVRAIARALDKAKVDSIEVAHGDGLQGSSFNYGFGRHTDLEYIEAVAGEISHAQIA   85 (289)
T ss_dssp             CBCEEEECTTTHHHHHTTTCCCHHHHHHHHHHHHHHTCSEEECSCTTSTTCCBTTTBCCSSCHHHHHHHHHTTCSSSEEE
T ss_pred             CCeEEEECCcccccCCCCCCCCHHHHHHHHHHHHHcCCCEEEeCCCcCcccccchhhhccchHHHHHHHHHHhcchhHHH
Confidence            569999999999999999999999999999999999999999998764321  1111   12334444444 56677888


Q ss_pred             EEeC----CHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCC
Q 015894          170 VLTP----NLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMV  245 (398)
Q Consensus       170 ~l~~----n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~  245 (398)
                      ++..    ..+++..+.+++++.++++...++.+              .+.+.++++|++|+.+.++++      +.+++
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~--------------~~~~~~~~a~~~g~~~~~~~~------~~~~~  145 (289)
T d1nvma2          86 TLLLPGIGSVHDLKNAYQAGARVVRVATHCTEAD--------------VSKQHIEYARNLGMDTVGFLM------MSHMI  145 (289)
T ss_dssp             EEECBTTBCHHHHHHHHHHTCCEEEEEEETTCGG--------------GGHHHHHHHHHHTCEEEEEEE------STTSS
T ss_pred             HHHhhhhhhHHHHHHHHHhcccceEEEeehhhhh--------------hHhHHHHHHHHhCCceeeEee------ecccc
Confidence            7764    35678889999999999999887653              345678899999999885554      56788


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhC-CCCeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894          246 PPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAV-PVDKLAVHFHDTYGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       246 ~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~-p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S  324 (398)
                      +++++.++++.+.++|+++|+|+||+|.++|.+++++++.+++++ |+++|++|+|||+|||+||+++|+++||++||+|
T Consensus       146 ~~~~~~~~~~~~~~~g~~~I~l~DT~G~~~P~~v~~~v~~l~~~~~~~~~i~~H~Hn~~g~a~an~l~A~~~G~~~id~s  225 (289)
T d1nvma2         146 PAEKLAEQGKLMESYGATCIYMADSGGAMSMNDIRDRMRAFKAVLKPETQVGMHAHHNLSLGVANSIVAVEEGCDRVDAS  225 (289)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEECTTCCCCHHHHHHHHHHHHHHSCTTSEEEEECBCTTSCHHHHHHHHHHTTCCEEEEB
T ss_pred             CchhhhHHHHhhccccceeeeecchhhcccchhHHHHHHHHHHHhcccccceeeechHHHHHHHHHHHHHHhCCcEeecc
Confidence            999999999999999999999999999999999999999999998 6789999999999999999999999999999999


Q ss_pred             cccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHH-HHHHhCCCCCCCcccccc
Q 015894          325 VSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDF-ICKHLGRTSGSKTAIALS  388 (398)
Q Consensus       325 v~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~-v~~~~g~~~~~~~pivG~  388 (398)
                      ++||||      |+||++||+++.+|+++|+++++|+++|.++++. ++++.++|+|+++|+||.
T Consensus       226 i~GlG~------~~GN~~tE~lv~~l~~~g~~~~id~~~l~~~~~~~~~~~~~~p~~~~~~~vg~  284 (289)
T d1nvma2         226 LAGMGA------GAGNAPLEVFIAVAERLGWNHGTDLYTLMDAADDIVRPLQDRPVRVDRETLGL  284 (289)
T ss_dssp             GGGCSS------TTCBCBHHHHHHHHHHHTCBCCSCHHHHHHHHHHTTGGGCSSCCSCCHHHHHH
T ss_pred             ccccCC------CCCCccHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHhcCCCCCCCCCeecC
Confidence            999999      9999999999999999999999999999998754 577889999999999994

>d1sr9a2 c.1.10.5 (A:61-370) 2-isopropylmalate synthase LeuA, catalytic domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: HMGL-like
domain: 2-isopropylmalate synthase LeuA, catalytic domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=100.00  E-value=4.5e-49  Score=379.81  Aligned_cols=279  Identities=17%  Similarity=0.096  Sum_probs=222.1

Q ss_pred             CCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc---cCCcEEEE
Q 015894           95 PGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV---EGARFPVL  171 (398)
Q Consensus        95 p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~---~~~~l~~l  171 (398)
                      .+++.|+|||||||+|+.+..|++++|++|++.|+++||++||+|||...   |  .+.+.+.+.....   .+....++
T Consensus         9 ~~~~~~~D~tLRDG~Q~~~~~~~~~~k~~i~~~L~~aGv~~IEvG~p~~s---~--~~~~~~~~~~~~~~~~~~~~~~~~   83 (310)
T d1sr9a2           9 DRAPLWCAVDLRDGNQALIDPMSPARKRRMFDLLVRMGYKEIEVGFPSAS---Q--TDFDFVREIIEQGAIPDDVTIQVL   83 (310)
T ss_dssp             CSCCEEEECTTTHHHHTCSSCCCHHHHHHHHHHHHHHTCSEEEEECTTTC---H--HHHHHHHHHHHTTCSCTTCEEEEE
T ss_pred             cCCCeeeECCCCccCcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCcCC---H--HHHHHHHHHHHhccccccceeeee
Confidence            34567889999999999999999999999999999999999999986542   1  2344444444422   23455555


Q ss_pred             eCC-HhhHHHH--HHcCC--CEEEEeccCchHHHhhhcCCCHHHHHHHHHHHH----HHHHhC-CCcEEEEEeeeecCCC
Q 015894          172 TPN-LKGFEAA--VAAGA--KEVAIFASASESFSKSNINCTIEDSLIRYRDVA----LAAREL-SIPVRGYLSCVVGCPV  241 (398)
Q Consensus       172 ~~n-~~~ie~a--~~~Gv--~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v----~~ak~~-G~~v~~~l~~~fg~~~  241 (398)
                      .++ ...+...  ...|.  ..+.+..+.+..+.+.+.+.+..+.........    ..+++. +..+...    +++++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  159 (310)
T d1sr9a2          84 TQCRPELIERTFQACSGAPRAIVHFYNSTSILQRRVVFRANRAEVQAIATDGARKCVEQAAKYPGTQWRFE----YSPES  159 (310)
T ss_dssp             EESCHHHHHHHHHHHTTCSEEEEEEEEECCHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHSCSSEEEEE----EEEET
T ss_pred             eeechhhhHHHHHhhcCcceeeEEeecchhHHHHHHHhhccHHhhhhhhhhhhhHHHHHHHHhhcceeEEE----Eeccc
Confidence            543 3333332  23343  467778888899999999998887766554433    333333 3333322    23345


Q ss_pred             CCCCCHHHHHHHHHHHHh------CCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCC---CeEEEEeCCccchHHHHHHH
Q 015894          242 EGMVPPSKVAYVSKQLYD------MGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPV---DKLAVHFHDTYGQALSNILA  312 (398)
Q Consensus       242 ~~r~~~~~l~~~a~~l~~------~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~---~~l~~H~Hnd~GlA~ANala  312 (398)
                      .++.+.+.+.+.++.+.+      .|++.|+|+||+|.++|.++.++++.+++++|+   ++|++|+|||+|||+||+++
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~l~Dt~G~~~P~~v~~~v~~~~~~~~~~~~i~i~~H~Hn~~Gla~AN~la  239 (310)
T d1sr9a2         160 YTGTELEYAKQVCDAVGEVIAPTPERPIIFNLPATVEMTTPNVYADSIEWMSRNLANRESVILSLHPHNDRGTAVAAAEL  239 (310)
T ss_dssp             GGGSCHHHHHHHHHHHHHHHCCBTTBCEEEEEEESSCCSCHHHHHHHHHHHHHHSSSGGGEEEEEEEBCTTSCHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHhhhhhcCceEEeecccccccchhHHHHHHHHHHHhccCccceeeeeccccchhhhhHHHHH
Confidence            566778887776665544      388999999999999999999999999999974   67999999999999999999


Q ss_pred             HHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCCCCCCCcccccc
Q 015894          313 SLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGRTSGSKTAIALS  388 (398)
Q Consensus       313 Al~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~~~~~~~pivG~  388 (398)
                      |+++||++||+|++|||+      |+||++||+++.+|+.+|+++++|+++|.++++++++++|+|+|+|+|+||+
T Consensus       240 A~~aG~~~iD~si~GmG~------~aGN~~tE~lv~~l~~~g~~~~idl~~L~~~~~~v~~~~~~~~~~~~p~vG~  309 (310)
T d1sr9a2         240 GFAAGADRIEGCLFGNGE------RTGNVCLVTLGLNLFSRGVDPQIDFSNIDEIRRTVEYCNQLPVHERHPYGGD  309 (310)
T ss_dssp             HHHTTCCEEEEBGGGCSS------TTCBCBHHHHHHHHHTTTCCCSSCCTTHHHHHHHHHHHHSCCCCTTCTTTST
T ss_pred             HHhccCCEEecCCccccc------ccCChhHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHHhCCCCCCCCCCccC
Confidence            999999999999999999      9999999999999999999999999999999999999999999999999996

>d1r30a_ c.1.28.1 (A:) Biotin synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Radical SAM enzymes
family: Biotin synthase
domain: Biotin synthase
species: Escherichia coli [TaxId: 562]

Probab=98.18  E-value=0.00035  Score=64.66  Aligned_cols=221  Identities=12%  Similarity=0.051  Sum_probs=141.5

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe----CCHhhHHHHHHcCCCEE
Q 015894          114 NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT----PNLKGFEAAVAAGAKEV  189 (398)
Q Consensus       114 ~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~----~n~~~ie~a~~~Gv~~v  189 (398)
                      ..++.++.++.++.+.+.|+..+-+.....+..   -...+.+.+.++..+...+.+.+    .+.+.++...++|++.+
T Consensus        71 ~~~~~e~i~~~~~~~~~~G~~~~~~~~g~~~~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~e~l~~lk~aG~~~i  147 (312)
T d1r30a_          71 RLMEVEQVLESARKAKAAGSTRFCMGAAWKNPH---ERDMPYLEQMVQGVKAMGLEACMTLGTLSESQAQRLANAGLDYY  147 (312)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCSEEEEEECCSSCC---TTTHHHHHHHHHHHHHTTSEEEEECSSCCHHHHHHHHHHCCCEE
T ss_pred             cccchHHHHHHHHHHHHcCCEEEEEccCCCCCc---hhhHHHHHHHHHhcccccceeeeccccchHHHHHHhhcccceeE
Confidence            357899999999999999999887754332210   02245556666644322222221    36678899999999998


Q ss_pred             EEeccCch-HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCC--EEE
Q 015894          190 AIFASASE-SFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCS--EIS  266 (398)
Q Consensus       190 ~i~~~~Sd-~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad--~I~  266 (398)
                      .+..-+++ .+.+..-+.+.++.    .++++.|+++|+.+.++++  +|.+    -+.++..+....+.+++.+  .+.
T Consensus       148 ~~~iEs~~~~~~~~~~~~~~~~~----~~~~~~a~~~Gi~~~~~~i--~G~~----et~~d~~~~l~~l~~l~~~~~~i~  217 (312)
T d1r30a_         148 NHNLDTSPEFYGNIITTRTYQER----LDTLEKVRDAGIKVCSGGI--VGLG----ETVKDRAGLLLQLANLPTPPESVP  217 (312)
T ss_dssp             ECCCBSCHHHHHHHCCSSCHHHH----HHHHHHHHHHHCEEECCEE--ECSS----CCHHHHHHHHHHHHSSSSCCSEEE
T ss_pred             ecccchhhhhhccCCCCCCHHHH----HHHHHHHHHhccceecceE--ecCc----CcHHHHHHHHHHHHhcCCCCCeee
Confidence            77655444 44444445555544    4667889999999887666  6643    2456667777777776543  332


Q ss_pred             ------EccC----cCcCCHHHHHHHHHHHHhhCCCCeEEEEe-CCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCC
Q 015894          267 ------LGDT----IGVGTPGTVIPMLEAVLDAVPVDKLAVHF-HDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAK  335 (398)
Q Consensus       267 ------L~DT----~G~~~P~~v~~lv~~l~~~~p~~~l~~H~-Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~  335 (398)
                            ...|    ....+|.++..+++..|-.+|+..+.+=+ -...|.-.  ...++.+||+.|   +.  |+ .|- 
T Consensus       218 ~~~~~p~~gT~l~~~~~~~~~e~l~~iA~~Rl~lp~~~i~i~~~~~~~~~~~--~~~~L~~Gan~~---~~--~~-~~~-  288 (312)
T d1r30a_         218 INMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQT--QAMCFMAGANSI---FY--GC-KLL-  288 (312)
T ss_dssp             EEECCCCTTSTTSSCCCCCHHHHHHHHHHHHHHCTTSEEEEESSGGGSCHHH--HHHHHHHTCCEE---EC--SS-BSS-
T ss_pred             eccccCCCCcccccccCCCHHHHHHHHHHHHHhCCCcceEEEechhhcCHHH--HHHHHhcCCcEE---Ee--cC-ccc-
Confidence                  2344    23456788999999999888975554433 34444433  345799999843   22  22 111 


Q ss_pred             CCCCCccHHHHHHHHHhCCCCC
Q 015894          336 GASGNVATEDVVYMLNGLGVRT  357 (398)
Q Consensus       336 graGNa~lE~vv~~L~~~Gi~t  357 (398)
                       .+++...++.+.+++++|+.+
T Consensus       289 -t~~~~~~~~~~~~i~~~G~~P  309 (312)
T d1r30a_         289 -TTPNPEEDKDLQLFRKLGLNP  309 (312)
T ss_dssp             -SSBCCCHHHHHHHHHHTTCCS
T ss_pred             -cCCCCCHHHHHHHHHHcCCCc
Confidence             355678899999999999854

>d1mxsa_ c.1.10.1 (A:) KDPG aldolase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Pseudomonas putida [TaxId: 303]

Probab=97.24  E-value=0.0039  Score=55.61  Aligned_cols=148  Identities=18%  Similarity=0.192  Sum_probs=105.7

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEEEe-CCHhhHHHHHHcCCCEEEEecc
Q 015894          117 PAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPVLT-PNLKGFEAAVAAGAKEVAIFAS  194 (398)
Q Consensus       117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~~  194 (398)
                      +.++-+++++.|.+.|++.||+++-. |       +..+.++.++ +.|++.+.+=+ .+.++++.++++|++.+-- -.
T Consensus        27 ~~~~a~~~~~al~~~Gi~~iEitl~~-p-------~a~~~i~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~Fivs-P~   97 (216)
T d1mxsa_          27 REEDILPLADALAAGGIRTLEVTLRS-Q-------HGLKAIQVLREQRPELCVGAGTVLDRSMFAAVEAAGAQFVVT-PG   97 (216)
T ss_dssp             CGGGHHHHHHHHHHTTCCEEEEESSS-T-------HHHHHHHHHHHHCTTSEEEEECCCSHHHHHHHHHHTCSSEEC-SS
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEeCCC-h-------hHHHHHHHHHHhCCCcceeeeeeecHHHHHHHHhCCCCEEEC-CC
Confidence            46778999999999999999999843 3       2345666665 56887766544 6899999999999985532 11


Q ss_pred             CchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcC
Q 015894          195 ASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVG  274 (398)
Q Consensus       195 ~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~  274 (398)
                      .+                   .+++++|++.|+.+...+           .+|.++.    .+.++|++.+-+       
T Consensus        98 ~~-------------------~~v~~~a~~~~i~~iPGv-----------~TpsEi~----~A~~~G~~~vKl-------  136 (216)
T d1mxsa_          98 IT-------------------EDILEAGVDSEIPLLPGI-----------STPSEIM----MGYALGYRRFKL-------  136 (216)
T ss_dssp             CC-------------------HHHHHHHHHCSSCEECEE-----------CSHHHHH----HHHTTTCCEEEE-------
T ss_pred             Cc-------------------HHHHHHHHhcCCCccCCc-----------CCHHHHH----HHHHCCCCEEEe-------
Confidence            11                   367889999999875322           3566544    456799999876       


Q ss_pred             CHHHH---HHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCC
Q 015894          275 TPGTV---IPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGI  318 (398)
Q Consensus       275 ~P~~v---~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa  318 (398)
                      .|...   ..+++.++.-+|++++--    +-|.-..|.-.=+.+|+
T Consensus       137 FPA~~~~g~~~ikal~~p~p~~~fip----tGGV~~~n~~~yl~~~~  179 (216)
T d1mxsa_         137 FPAEISGGVAAIKAFGGPFGDIRFCP----TGGVNPANVRNYMALPN  179 (216)
T ss_dssp             TTHHHHTHHHHHHHHHTTTTTCEEEE----BSSCCTTTHHHHHHSTT
T ss_pred             ccccccccHHHHHHHhcccccCceec----cCCCCHHHHHHHHhcCC
Confidence            67653   468888888788765543    55666677777677774

>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Escherichia coli [TaxId: 562]

Probab=97.01  E-value=0.011  Score=52.45  Aligned_cols=150  Identities=23%  Similarity=0.185  Sum_probs=104.0

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEEEe-CCHhhHHHHHHcCCCEEEEecc
Q 015894          117 PAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPVLT-PNLKGFEAAVAAGAKEVAIFAS  194 (398)
Q Consensus       117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~~  194 (398)
                      +.++-+++++.|.+.|++.||+++- .|       .+.+.++.++ +.|+..+.+=+ .+.++++.++++|++.+--- .
T Consensus        25 ~~~~a~~~~~al~~~Gi~~iEitl~-tp-------~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivSP-~   95 (213)
T d1wbha1          25 KLEHAVPMAKALVAGGVRVLNVTLR-TE-------CAVDAIRAIAKEVPEAIVGAGTVLNPQQLAEVTEAGAQFAISP-G   95 (213)
T ss_dssp             SGGGHHHHHHHHHHTTCCEEEEESC-ST-------THHHHHHHHHHHCTTSEEEEESCCSHHHHHHHHHHTCSCEEES-S
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEeCC-Ch-------hHHHHHHHHHHHCCCCeeeccccccHHHHHHHHHCCCcEEECC-C
Confidence            5677799999999999999999983 23       2445566665 56887665543 68999999999999966432 1


Q ss_pred             CchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE--ccCcC
Q 015894          195 ASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL--GDTIG  272 (398)
Q Consensus       195 ~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L--~DT~G  272 (398)
                      .+                   .+++++|+++|+.+-..+           .+|.++.    .+.++|++.+-+  +++.|
T Consensus        96 ~~-------------------~~v~~~a~~~~i~~iPGv-----------~TpsEi~----~A~~~G~~~vKlFPA~~~G  141 (213)
T d1wbha1          96 LT-------------------EPLLKAATEGTIPLIPGI-----------STVSELM----LGMDYGLKEFKFFPAEANG  141 (213)
T ss_dssp             CC-------------------HHHHHHHHHSSSCEEEEE-----------SSHHHHH----HHHHTTCCEEEETTTTTTT
T ss_pred             CC-------------------HHHHHHHHhcCCCccCCc-----------CCHHHHH----HHHHCCCCEEEeccchhcC
Confidence            11                   367899999999876433           3565543    466799998765  34433


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCC
Q 015894          273 VGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGIS  319 (398)
Q Consensus       273 ~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~  319 (398)
                      .      ..+++.++.-+|++++-    -+-|....|.-.=+.+|+.
T Consensus       142 g------~~~lkal~~p~p~~~~~----ptGGV~~~n~~~yl~~g~v  178 (213)
T d1wbha1         142 G------VKALQAIAGPFSQVRFC----PTGGISPANYRDYLALKSV  178 (213)
T ss_dssp             H------HHHHHHHHTTCTTCEEE----EBSSCCTTTHHHHHTSTTB
T ss_pred             h------HHHHHHhcCcccCCcee----eeCCCCHHHHHHHHhCCCE
Confidence            1      25678888878875544    3445556677777777764

>d2q02a1 c.1.15.4 (A:1-271) Putative cytoplasmic protein STM4435 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: IolI-like
domain: Putative cytoplasmic protein STM4435
species: Salmonella typhimurium [TaxId: 90371]

Probab=97.00  E-value=0.027  Score=50.16  Aligned_cols=207  Identities=11%  Similarity=0.011  Sum_probs=115.8

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC-------CH-------hhHHH
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP-------NL-------KGFEA  180 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~-------n~-------~~ie~  180 (398)
                      .+|.++.++   ...++|++.||+.........+...+++++.+.++. .++++.++..       +.       +-++.
T Consensus        17 ~l~lee~l~---~a~~~G~dgiEl~~~~~~~~~~~~~~~~~~k~~l~~-~gl~i~~l~~~~~~~~~~~~~~~~~~~~i~~   92 (271)
T d2q02a1          17 GLSIEAFFR---LVKRLEFNKVELRNDMPSGSVTDDLNYNQVRNLAEK-YGLEIVTINAVYPFNQLTEEVVKKTEGLLRD   92 (271)
T ss_dssp             TSCHHHHHH---HHHHTTCCEEEEETTSTTSSTTTTCCHHHHHHHHHH-TTCEEEEEEEETTTTSCCHHHHHHHHHHHHH
T ss_pred             CCCHHHHHH---HHHHhCCCEEEEecCcccccccccCCHHHHHHHHHH-cCCcEEEeecccccCCCCHHHHHHHHHHHHH
Confidence            356666654   456789999999643222222223356666666653 4566555542       11       12567


Q ss_pred             HHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC
Q 015894          181 AVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM  260 (398)
Q Consensus       181 a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~  260 (398)
                      |.+.|++.|++.....      ......+...+.++++.++|++.|+.+.  +... +-+...-.+.+...++++.+. .
T Consensus        93 a~~lG~~~v~~~~~~~------~~~~~~~~~~~~l~~l~~~a~~~gv~l~--lE~~-~~~~~~~~~~~~~~~li~~~~-~  162 (271)
T d2q02a1          93 AQGVGARALVLCPLND------GTIVPPEVTVEAIKRLSDLFARYDIQGL--VEPL-GFRVSSLRSAVWAQQLIREAG-S  162 (271)
T ss_dssp             HHHHTCSEEEECCCCS------SBCCCHHHHHHHHHHHHHHHHTTTCEEE--ECCC-CSTTCSCCCHHHHHHHHHHHT-C
T ss_pred             HHHcCCcEEEEecCCC------CccchHHHHHHHHHHHHHHhccCCeEEE--Eeec-CCcCcccCCHHHHHHHHHHhC-C
Confidence            7788999998864322      2334567788889999999999998765  2210 111112235666666666542 3


Q ss_pred             CCCEEEEccCcCc-CCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCC
Q 015894          261 GCSEISLGDTIGV-GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASG  339 (398)
Q Consensus       261 Gad~I~L~DT~G~-~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graG  339 (398)
                      .+ .+++ |+.-. ..+....+.   +.+..++--.++|.+|..+...-         .+..|.. ..+..      +.|
T Consensus       163 ~~-g~~~-D~~H~~~~g~~~~~~---~~~l~~~~i~~vH~~d~~~~~~~---------~~~~~~~-r~~~~------G~G  221 (271)
T d2q02a1         163 PF-KVLL-DTFHHHLYEEAEKEF---ASRIDISAIGLVHLSGVEDTRPT---------EALADEQ-RIMLS------EKD  221 (271)
T ss_dssp             CC-EEEE-EHHHHHHCTTHHHHH---HHHCCGGGEEEEEECBCCCCSCG---------GGCCGGG-CBCCC------TTC
T ss_pred             cc-ceec-cchhHHHcCCChHHH---HHHhCcCcEEEEEEEeCCCCCcc---------ccccccc-eeccC------CCc
Confidence            22 4444 76422 122232222   22223333477888885432210         0011110 11222      578


Q ss_pred             CccHHHHHHHHHhCCCC
Q 015894          340 NVATEDVVYMLNGLGVR  356 (398)
Q Consensus       340 Na~lE~vv~~L~~~Gi~  356 (398)
                      +.+...++..|+..|++
T Consensus       222 ~id~~~i~~~L~~~GY~  238 (271)
T d2q02a1         222 VMQNYQQVQRLENMGYR  238 (271)
T ss_dssp             SSCHHHHHHHHHHTTCC
T ss_pred             ccCHHHHHHHHHHcCCC
Confidence            99999999999998875

>d1wa3a1 c.1.10.1 (A:2-203) KDPG aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: KDPG aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=96.95  E-value=0.02  Score=50.33  Aligned_cols=152  Identities=21%  Similarity=0.294  Sum_probs=105.3

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh--ccCCcEEEE-eCCHhhHHHHHHcCCCEEEEe
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN--VEGARFPVL-TPNLKGFEAAVAAGAKEVAIF  192 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~--~~~~~l~~l-~~n~~~ie~a~~~Gv~~v~i~  192 (398)
                      -+.++-+++++.|.+.|++.+|+++-. |       +..+.++.++.  .++..+.+= +.+.++++.++++|++.+-  
T Consensus        18 ~~~~~a~~~~~al~~~Gi~~iEitlr~-p-------~a~~~i~~l~~~~~~~~~vGaGTV~~~~~~~~a~~aGa~fiv--   87 (202)
T d1wa3a1          18 NSVEEAKEKALAVFEGGVHLIEITFTV-P-------DADTVIKELSFLKEKGAIIGAGTVTSVEQCRKAVESGAEFIV--   87 (202)
T ss_dssp             SSHHHHHHHHHHHHHTTCCEEEEETTS-T-------THHHHHHHTHHHHHTTCEEEEESCCSHHHHHHHHHHTCSEEE--
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEEecCC-c-------cHHHHHHHHHHhcCCCcEEEecccccHHHHHHHHhhcccEEe--
Confidence            357888999999999999999999742 3       23455555542  366666543 3689999999999999773  


Q ss_pred             ccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcC
Q 015894          193 ASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIG  272 (398)
Q Consensus       193 ~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G  272 (398)
                         |+..       +        .++++++++.|+.+-+.+           .++.++..    +.++|++.+-+     
T Consensus        88 ---sP~~-------~--------~~v~~~~~~~~i~~iPGv-----------~TpsEi~~----A~~~G~~~lK~-----  129 (202)
T d1wa3a1          88 ---SPHL-------D--------EEISQFCKEKGVFYMPGV-----------MTPTELVK----AMKLGHTILKL-----  129 (202)
T ss_dssp             ---CSSC-------C--------HHHHHHHHHHTCEEECEE-----------CSHHHHHH----HHHTTCCEEEE-----
T ss_pred             ---CCCC-------c--------HHHHHHHHhcCCceeCCc-----------CcHHHHHH----HHHCCCCEEEe-----
Confidence               2211       1        366788999999765322           35665444    45799999877     


Q ss_pred             cCCHHHHH--HHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894          273 VGTPGTVI--PMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       273 ~~~P~~v~--~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                        .|..+.  .+++.++.-+|++++--    +=|-...|...-+++|+..|
T Consensus       130 --fPa~~~G~~~lk~l~~p~p~i~~ip----tGGI~~~n~~~~l~aga~av  174 (202)
T d1wa3a1         130 --FPGEVVGPQFVKAMKGPFPNVKFVP----TGGVNLDNVCEWFKAGVLAV  174 (202)
T ss_dssp             --TTHHHHHHHHHHHHHTTCTTCEEEE----BSSCCTTTHHHHHHHTCSCE
T ss_pred             --cchhhcCHHHHHHHhCcccCCcEEe----eCCCCHHHHHHHHHCCCeEE
Confidence              454442  57888888788766543    33445568888888898755

>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermus thermophilus [TaxId: 274]

Probab=96.94  E-value=0.024  Score=50.14  Aligned_cols=181  Identities=15%  Similarity=0.116  Sum_probs=114.8

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe--CC--------HhhHHHHHH
Q 015894          114 NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT--PN--------LKGFEAAVA  183 (398)
Q Consensus       114 ~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~n--------~~~ie~a~~  183 (398)
                      ...+.++..++++.-.+.|+..+-+    .|.|+|      ...+.++ -.++++.+.+  |.        ...++.|++
T Consensus        13 ~~~T~~~i~~lc~~A~~~~~~aVcV----~P~~v~------~a~~~l~-~s~v~v~~VigFP~G~~~~~~k~~e~~~ai~   81 (211)
T d1ub3a_          13 PTATLEEVAKAAEEALEYGFYGLCI----PPSYVA------WVRARYP-HAPFRLVTVVGFPLGYQEKEVKALEAALACA   81 (211)
T ss_dssp             TTCCHHHHHHHHHHHHHHTCSEEEC----CGGGHH------HHHHHCT-TCSSEEEEEESTTTCCSCHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHhCCeEEEE----CHHHHH------HHHHHcc-CCCCceEEEEecccccCcHHHHHHHHHHHHH
Confidence            3578899999999999999987766    344332      1222222 1346666555  31        235778899


Q ss_pred             cCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCC
Q 015894          184 AGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCS  263 (398)
Q Consensus       184 ~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad  263 (398)
                      .|+++|.+.+..+-.     ..-+.+...+.+..+++.+.+  ..+-+-+.       .+..+.+.+...++.+.+.|+|
T Consensus        82 ~GA~EiD~V~n~~~~-----~~g~~~~v~~ei~~v~~~~~~--~~lKVIlE-------t~~L~~~ei~~a~~~a~~aGad  147 (211)
T d1ub3a_          82 RGADEVDMVLHLGRA-----KAGDLDYLEAEVRAVREAVPQ--AVLKVILE-------TGYFSPEEIARLAEAAIRGGAD  147 (211)
T ss_dssp             TTCSEEEEECCHHHH-----HTTCHHHHHHHHHHHHHHSTT--SEEEEECC-------GGGSCHHHHHHHHHHHHHHTCS
T ss_pred             cCCCeEEEeeccchh-----hcCCHHHHHHHHHHHHHhccC--CceEEEec-------cccCCHHHHHHHHHHHHHhccc
Confidence            999999998875432     122566666667777666643  33332122       2346788999999999999999


Q ss_pred             EEEEccCc--CcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeecc
Q 015894          264 EISLGDTI--GVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSV  325 (398)
Q Consensus       264 ~I~L~DT~--G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv  325 (398)
                      -|--.--.  +..+|++++-+.+.+..+     ++++.---. --...+++-+++|+++|-+|-
T Consensus       148 fiKTSTG~~~~gat~e~v~~m~~~~~~~-----~~iKasGGI-rt~~~a~~~l~aGa~riGtSs  205 (211)
T d1ub3a_         148 FLKTSTGFGPRGASLEDVALLVRVAQGR-----AQVKAAGGI-RDRETALRMLKAGASRLGTSS  205 (211)
T ss_dssp             EEECCCSSSSCCCCHHHHHHHHHHHTTS-----SEEEEESSC-CSHHHHHHHHHTTCSEEEETT
T ss_pred             eEEecCCCCCCCCCHHHHHHHHHHhCCC-----ceEECcCCC-CCHHHHHHHHHHhhhHhccCc
Confidence            76655432  346888888777666433     444331100 123455677899999987763

>d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class II FBP aldolase
domain: Fructose-bisphosphate aldolase (FBP aldolase)
species: Thermus aquaticus [TaxId: 271]

Probab=96.88  E-value=0.019  Score=53.57  Aligned_cols=190  Identities=18%  Similarity=0.189  Sum_probs=130.4

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH---hccCCcEEEE---eCCHhhHHHHHHcCCCE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ---NVEGARFPVL---TPNLKGFEAAVAAGAKE  188 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~---~~~~~~l~~l---~~n~~~ie~a~~~Gv~~  188 (398)
                      .++.++...++++-.+..-+.|=--++..-++.+     .+....++   +-.++.+...   +.+.+.+.+++++|.+.
T Consensus        24 ~~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~-----~~~~~~~~~~a~~~~vpv~lHlDH~~~~e~i~~ai~~GftS   98 (305)
T d1rvga_          24 VNNMEFLQAVLEAAEEQRSPVILALSEGAMKYGG-----RALTLMAVELAKEARVPVAVHLDHGSSYESVLRALRAGFTS   98 (305)
T ss_dssp             CCSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHHH-----HHHHHHHHHHHHHCSSCEEEEEEEECSHHHHHHHHHTTCSE
T ss_pred             ECCHHHHHHHHHHHHHHCCCEEEECCccHHhHcc-----HHHHHHHHHHHhccCCcEEEeehhccChhhhHHHHhcCCce
Confidence            5778888889999999999987544332211111     12222222   2234444443   35778899999999998


Q ss_pred             EEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC--------CCCCHHHHHHHHHHHHhC
Q 015894          189 VAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE--------GMVPPSKVAYVSKQLYDM  260 (398)
Q Consensus       189 v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~--------~r~~~~~l~~~a~~l~~~  260 (398)
                      |.+=.|          ..+.+++++.-++++++|+..|+.|++.|-..-|.++.        .-++|+...++++   +.
T Consensus        99 VMiDgS----------~l~~eeNi~~Tk~vv~~Ah~~gv~VEaElG~igg~Ed~~~~~~~~~~~T~peea~~Fv~---~T  165 (305)
T d1rvga_          99 VMIDKS----------HEDFETNVRETRRVVEAAHAVGVTVEAELGRLAGIEEHVAVDEKDALLTNPEEARIFME---RT  165 (305)
T ss_dssp             EEECCT----------TSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCCCSCC------CCTTCCCHHHHHHHHH---HH
T ss_pred             EEEcCc----------cccHHHHHHHHHHHHHHhchhceeEEeeeeeeecccccccccccccccCCHHHHHHHHH---Hh
Confidence            887333          23578999999999999999999999888876555442        1368888777654   57


Q ss_pred             CCCEEE--EccCcCcCC----HHHHHHHHHHHHhhCCCCeEEEEe-------------------CCccchHHHHHHHHHH
Q 015894          261 GCSEIS--LGDTIGVGT----PGTVIPMLEAVLDAVPVDKLAVHF-------------------HDTYGQALSNILASLQ  315 (398)
Q Consensus       261 Gad~I~--L~DT~G~~~----P~~v~~lv~~l~~~~p~~~l~~H~-------------------Hnd~GlA~ANalaAl~  315 (398)
                      |+|.+.  +.-.=|.-.    |.==.++++.+++..+ +||.+|+                   |-..|..-.....|+.
T Consensus       166 gvD~LAvaiGn~HG~Yk~~~~~~l~~~~l~~I~~~~~-~PLVlHGgS~vp~~~~~~~~~~g~~lhg~sG~~~e~i~~ai~  244 (305)
T d1rvga_         166 GADYLAVAIGTSHGAYKGKGRPFIDHARLERIARLVP-APLVLHGASAVPPELVERFRASGGEIGEAAGIHPEDIKKAIS  244 (305)
T ss_dssp             CCSEEEECSSCCSSSBCSSSSCCCCHHHHHHHHHHCC-SCEEECSCCCCCHHHHHHHHHTTCCCCSCBCCCHHHHHHHHH
T ss_pred             CccHhhhhhhhhhcccCCCCcccchHHHHHHHHhccC-CCeeccCCccccHHHHhhhcccCcccCCCCCCCHHHHHHHHH
Confidence            999644  444444332    2223466788887776 5899988                   6677999999999999


Q ss_pred             hCCCEEee
Q 015894          316 MGISTVDS  323 (398)
Q Consensus       316 aGa~~VD~  323 (398)
                      .|+.-|+.
T Consensus       245 ~GV~KiNi  252 (305)
T d1rvga_         245 LGIAKINT  252 (305)
T ss_dssp             TTEEEEEE
T ss_pred             cCeEEEEe
Confidence            99876644

>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Archaeon Pyrococcus furiosus [TaxId: 2261]

Probab=96.87  E-value=0.0082  Score=54.51  Aligned_cols=174  Identities=18%  Similarity=0.204  Sum_probs=100.1

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCC-c-cc--CC---------CCHHHHHHHHH---hccCCcEEEEeC-CH---
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPK-W-VP--QL---------ADAKDVMAAIQ---NVEGARFPVLTP-NL---  175 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~-~-~p--~~---------~D~~~v~~~i~---~~~~~~l~~l~~-n~---  175 (398)
                      -+.+.-+++++.|++ |++.||+|+|.+.+ + .|  |.         .+.+.+++.++   +..++.+..|+. |.   
T Consensus        16 P~~~~s~~~l~~l~~-g~d~iEiGiPfSDP~aDGpvIq~A~~rAl~~G~~~~~~~~~~~~~r~~~~~pivlm~Y~N~i~~   94 (248)
T d1geqa_          16 PDKQSTLNFLLALDE-YAGAIELGIPFSDPIADGKTIQESHYRALKNGFKLREAFWIVKEFRRHSSTPIVLMTYYNPIYR   94 (248)
T ss_dssp             SCHHHHHHHHHHHGG-GBSCEEEECCCSCCTTSCHHHHHHHHHHHHTTCCHHHHHHHHHHHHTTCCCCEEEEECHHHHHH
T ss_pred             CCHHHHHHHHHHHHc-CCCEEEECCCCCCccccCHHHHHhhhHHHhCCccHHHHHHHHHHHhhcCCCcEEEEeccccccc
Confidence            456777899999965 99999999987632 1 01  10         12334444443   334566666663 42   


Q ss_pred             hh----HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHH
Q 015894          176 KG----FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVA  251 (398)
Q Consensus       176 ~~----ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~  251 (398)
                      .+    ++.+.++|++.+-+.+--            .    +...+..+.++++|+....-++     |   .++++.+.
T Consensus        95 ~G~~~f~~~~~~~Gv~GliipDLP------------~----eE~~~~~~~~~~~gl~~I~lva-----P---tt~~~ri~  150 (248)
T d1geqa_          95 AGVRNFLAEAKASGVDGILVVDLP------------V----FHAKEFTEIAREEGIKTVFLAA-----P---NTPDERLK  150 (248)
T ss_dssp             HCHHHHHHHHHHHTCCEEEETTCC------------G----GGHHHHHHHHHHHTCEEEEEEC-----T---TCCHHHHH
T ss_pred             cCHHHHhhhhcccCeeEEeccCCc------------H----HHHHHHHhhccccCcceEEEec-----c---cchhHHHH
Confidence            23    467788999999886431            1    2234667788899997653222     3   23455555


Q ss_pred             HHHHHHHhCC-CCEEEEccCcCcC--CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHH-HHHHHHHhCCCEE
Q 015894          252 YVSKQLYDMG-CSEISLGDTIGVG--TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALS-NILASLQMGISTV  321 (398)
Q Consensus       252 ~~a~~l~~~G-ad~I~L~DT~G~~--~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~A-NalaAl~aGa~~V  321 (398)
                      .+++..  -| +..+...=+.|.-  .|.++.++++.+|+.. +.|+.+    -+|.... .+..++.+|||.|
T Consensus       151 ~i~~~s--~gFiY~vs~~GvTG~~~~~~~~~~~~v~~vk~~t-~~Pv~v----GFGI~~~e~v~~~~~~~ADGv  217 (248)
T d1geqa_         151 VIDDMT--TGFVYLVSLYGTTGAREEIPKTAYDLLRRAKRIC-RNKVAV----GFGVSKREHVVSLLKEGANGV  217 (248)
T ss_dssp             HHHHHC--SSEEEEECCC-------CCCHHHHHHHHHHHHHC-SSCEEE----ESCCCSHHHHHHHHHTTCSEE
T ss_pred             HHHhcC--CCeEEEEecccccccchhhhhhHHHHHHHHhhhc-ccceee----ecccCCHHHHHHHHhcCCCEE
Confidence            554321  12 2333444444433  5788999999999975 356665    2333332 3445677888854

>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.86  E-value=0.019  Score=51.23  Aligned_cols=186  Identities=13%  Similarity=0.069  Sum_probs=114.2

Q ss_pred             EEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe--CC---
Q 015894          100 IVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT--PN---  174 (398)
Q Consensus       100 i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~n---  174 (398)
                      ++|-|+      .+...+.++..++++.-.+.|+..+-+-    |.|+|      ...   +.++++++.+.+  |.   
T Consensus         7 ~ID~Tl------L~~~~t~~~i~~lc~~A~~~~~~aVcV~----P~~v~------~a~---~~l~~vkv~tVigFP~G~~   67 (225)
T d1mzha_           7 YIDNAA------LKPHLSEKEIEEFVLKSEELGIYAVCVN----PYHVK------LAS---SIAKKVKVCCVIGFPLGLN   67 (225)
T ss_dssp             GEEEEE------CCTTCCHHHHHHHHHHHHHTTCSEEEEC----GGGHH------HHH---HHCSSSEEEEEESTTTCCS
T ss_pred             hhhhcc------CCCCCCHHHHHHHHHHHHHhCCcEEEEC----HHHHH------HHH---hhccCCceEEEeccCCCCC
Confidence            455555      2336788999999999999999988873    44442      111   234567777655  31   


Q ss_pred             -----HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHH
Q 015894          175 -----LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSK  249 (398)
Q Consensus       175 -----~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~  249 (398)
                           ...++.|++.|+++|.+.+..+...     .-..+...+.+..+++.+.  |..+-+  ..+     .+..+.+.
T Consensus        68 ~~~~K~~E~~~Ai~~GAdEID~Vin~~~l~-----~g~~~~v~~ei~~v~~~~~--~~~lKV--IlE-----t~~L~~~e  133 (225)
T d1mzha_          68 KTSVKVKEAVEAVRDGAQELDIVWNLSAFK-----SEKYDFVVEELKEIFRETP--SAVHKV--IVE-----TPYLNEEE  133 (225)
T ss_dssp             CHHHHHHHHHHHHHTTCSEEEEECCHHHHH-----TTCHHHHHHHHHHHHHTCT--TSEEEE--ECC-----GGGCCHHH
T ss_pred             cHHHHHHHHHHHHHcCCCeEEEeechhhhh-----cccHHHHHHHHHHHHHhcc--Cceeeh--hhh-----hccCCHHH
Confidence                 2357889999999999988754331     1245556666655555442  333332  222     23457788


Q ss_pred             HHHHHHHHHhCCCCEEEEccCc--CcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894          250 VAYVSKQLYDMGCSEISLGDTI--GVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       250 l~~~a~~l~~~Gad~I~L~DT~--G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S  324 (398)
                      +...++.+.++|+|-|--+--.  +..+|++++.+-+.+..+     +++..---.- -+..++.-+++|+++|-+|
T Consensus       134 i~~a~~~a~~aGadfiKTSTG~~~~gat~e~v~~m~~~~~~~-----~~iKasGGIr-t~~~a~~~i~~Ga~RiGtS  204 (225)
T d1mzha_         134 IKKAVEICIEAGADFIKTSTGFAPRGTTLEEVRLIKSSAKGR-----IKVKASGGIR-DLETAISMIEAGADRIGTS  204 (225)
T ss_dssp             HHHHHHHHHHHTCSEEECCCSCSSSCCCHHHHHHHHHHHTTS-----SEEEEESSCC-SHHHHHHHHHTTCSEEEES
T ss_pred             HHHHHHHHHHcccceEeecCCCCCCCCCHHHHHHHHHHhCCC-----ceEECcCCCC-CHHHHHHHHHhchhheecC
Confidence            9999999999999966533322  235777766655544332     3333221111 1356677889999987443

>d1vhca_ c.1.10.1 (A:) Hypothetical protein HI0047 {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Hypothetical protein HI0047
species: Haemophilus influenzae [TaxId: 727]

Probab=96.85  E-value=0.015  Score=51.45  Aligned_cols=149  Identities=22%  Similarity=0.235  Sum_probs=101.5

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEEEe-CCHhhHHHHHHcCCCEEEEecc
Q 015894          117 PAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPVLT-PNLKGFEAAVAAGAKEVAIFAS  194 (398)
Q Consensus       117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~~  194 (398)
                      +.++-++++++|.+.|++.||+++- +|       .+-+.++.++ +.|++.+.+=+ .+.++++.++++|++.+--   
T Consensus        24 ~~~~~~~~~~al~~~Gi~~iEitl~-~~-------~a~~~I~~l~~~~p~~~vGaGTV~~~~~~~~a~~aGa~FivS---   92 (212)
T d1vhca_          24 NADDILPLADTLAKNGLSVAEITFR-SE-------AAADAIRLLRANRPDFLIAAGTVLTAEQVVLAKSSGADFVVT---   92 (212)
T ss_dssp             SGGGHHHHHHHHHHTTCCEEEEETT-ST-------THHHHHHHHHHHCTTCEEEEESCCSHHHHHHHHHHTCSEEEC---
T ss_pred             CHHHHHHHHHHHHHCCCCEEEEeCC-Ch-------hHHHHHHHHHhcCCCceEeeeecccHHHHHHHHhhCCcEEEC---
Confidence            4567789999999999999999973 23       2334555555 56786665543 6899999999999996542   


Q ss_pred             CchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc--cCcC
Q 015894          195 ASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG--DTIG  272 (398)
Q Consensus       195 ~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~--DT~G  272 (398)
                        +.+       +        .+++++|+++++.+-..           -.+|.++.    .+.++|++.+-+=  +.+|
T Consensus        93 --P~~-------~--------~~v~~~a~~~~i~~iPG-----------v~TpsEi~----~A~~~G~~~vK~FPA~~~g  140 (212)
T d1vhca_          93 --PGL-------N--------PKIVKLCQDLNFPITPG-----------VNNPMAIE----IALEMGISAVKFFPAEASG  140 (212)
T ss_dssp             --SSC-------C--------HHHHHHHHHTTCCEECE-----------ECSHHHHH----HHHHTTCCEEEETTTTTTT
T ss_pred             --CCC-------C--------HHHHHHHHhcCCCccCC-----------cCCHHHHH----HHHHCCCCEEEEccccccc
Confidence              211       0        36789999999987532           24566544    4567999987662  2222


Q ss_pred             cCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCC
Q 015894          273 VGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGI  318 (398)
Q Consensus       273 ~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa  318 (398)
                        -    ..+++.++.-+|++++-    -+-|....|.-.=+.+|+
T Consensus       141 --G----~~~lkal~~p~p~~~~~----ptGGV~~~N~~~yl~~g~  176 (212)
T d1vhca_         141 --G----VKMIKALLGPYAQLQIM----PTGGIGLHNIRDYLAIPN  176 (212)
T ss_dssp             --H----HHHHHHHHTTTTTCEEE----EBSSCCTTTHHHHHTSTT
T ss_pred             --h----HHHHHHHhccccCCeEE----ecCCCCHHHHHHHHhCCC
Confidence              1    35678888778876553    345556667777677775

>d1ojxa_ c.1.10.1 (A:) Archaeal fructose 1,6-bisphosphate aldolase {Archaeon Thermoproteus tenax [TaxId: 2271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Archaeal fructose 1,6-bisphosphate aldolase
species: Archaeon Thermoproteus tenax [TaxId: 2271]

Probab=96.68  E-value=0.013  Score=53.04  Aligned_cols=130  Identities=18%  Similarity=0.168  Sum_probs=89.3

Q ss_pred             hHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHH
Q 015894          177 GFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQ  256 (398)
Q Consensus       177 ~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~  256 (398)
                      +++.+++.|++-|-+.+...+-        ..++.++++.++++.|+++|+.+.+. .+..|.......+++.+...++.
T Consensus        95 sve~a~rlGadaV~~~v~~g~~--------~e~~~l~~~~~v~~e~~~~glP~v~e-~~p~g~~~~~~~~~~~v~~aari  165 (251)
T d1ojxa_          95 SVEEAVSLGASAVGYTIYPGSG--------FEWKMFEELARIKRDAVKFDLPLVVW-SYPRGGKVVNETAPEIVAYAARI  165 (251)
T ss_dssp             CHHHHHHTTCSEEEEEECTTST--------THHHHHHHHHHHHHHHHHHTCCEEEE-ECCCSTTCCCTTCHHHHHHHHHH
T ss_pred             CHHHHHhchhceEEEEEeCCCC--------chHHHHHHHHHHHHHHHHcCCeEEEE-EeecCCccccCCCHHHHHHHHHH
Confidence            5899999999977664433221        24568999999999999999997543 34455455567889999999999


Q ss_pred             HHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEE---EeCCccchHHHHHHHHHHhCCCEEe
Q 015894          257 LYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAV---HFHDTYGQALSNILASLQMGISTVD  322 (398)
Q Consensus       257 l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~---H~Hnd~GlA~ANalaAl~aGa~~VD  322 (398)
                      +.++|+|.+.+.      .|.....+...+....+ .|+-+   =-..+..-.+...-.|+++||..+-
T Consensus       166 a~ElGaDivK~~------~p~~~~~~~~~v~~a~~-~pv~~~gG~~~~~~~~~l~~~~~a~~~Ga~G~~  227 (251)
T d1ojxa_         166 ALELGADAMKIK------YTGDPKTFSWAVKVAGK-VPVLMSGGPKTKTEEDFLKQVEGVLEAGALGIA  227 (251)
T ss_dssp             HHHHTCSEEEEC------CCSSHHHHHHHHHHTTT-SCEEEECCSCCSSHHHHHHHHHHHHHTTCCEEE
T ss_pred             HHHhCCCEEEec------CCCcHHHHHHHHHhcCC-CceEEeCCCCCCCHHHHHHHHHHHHHCCCcEEe
Confidence            999999998774      23333333333333222 22222   2345677778888899999987554

>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermotoga maritima [TaxId: 2336]

Probab=96.63  E-value=0.089  Score=47.46  Aligned_cols=181  Identities=14%  Similarity=0.082  Sum_probs=116.6

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe--C---C-----HhhHHHHH
Q 015894          113 KNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT--P---N-----LKGFEAAV  182 (398)
Q Consensus       113 ~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~---n-----~~~ie~a~  182 (398)
                      +-..+.++..++++.-.+.|+..+-+-    |.|+|      ...+.++ -.++++.+.+  |   .     ...++.|+
T Consensus        45 ~p~~t~e~i~~lc~~A~~~~~aaVcV~----P~~v~------~a~~~L~-gs~v~v~tVigFP~G~~~~~~K~~Ea~~Ai  113 (251)
T d1o0ya_          45 KPFATPDDIKKLCLEARENRFHGVCVN----PCYVK------LAREELE-GTDVKVVTVVGFPLGANETRTKAHEAIFAV  113 (251)
T ss_dssp             CTTCCHHHHHHHHHHHHHHTCSEEEEC----GGGHH------HHHHHHT-TSCCEEEEEESTTTCCSCHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHhhcCceEEEEC----HHHHH------HHHHHhc-CCCceEEeeccCCCCCCcHHHHHHHHHHHH
Confidence            346788999999999999999988773    43332      2233332 2356666555  3   1     23577899


Q ss_pred             HcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCC
Q 015894          183 AAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGC  262 (398)
Q Consensus       183 ~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Ga  262 (398)
                      +.|+++|.+.+..+-.     ..-..+...+.+..+++.++  |..+-+-|.       ....+.+.....++.+.+.|+
T Consensus       114 ~~GAdEID~Vin~~~l-----~~g~~~~v~~ei~~v~~~~~--~~~lKVIlE-------t~~L~~~e~~~a~~ia~~aGa  179 (251)
T d1o0ya_         114 ESGADEIDMVINVGML-----KAKEWEYVYEDIRSVVESVK--GKVVKVIIE-------TCYLDTEEKIAACVISKLAGA  179 (251)
T ss_dssp             HHTCSEEEEECCHHHH-----HTTCHHHHHHHHHHHHHHTT--TSEEEEECC-------GGGCCHHHHHHHHHHHHHTTC
T ss_pred             HcCCceEEEEeccchh-----hcCCHHHHHHHHHHHHHHhc--ccceeeeec-------ccccCcHHHHHHHHHHHHhCc
Confidence            9999999999875443     23356677777777777664  555543222       234677888899999999999


Q ss_pred             CEEEEccCc--CcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894          263 SEISLGDTI--GVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       263 d~I~L~DT~--G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S  324 (398)
                      |-|--+--.  |..+|+++.-+-..+..     .+++..---. --...++.-+.+|+++|-+|
T Consensus       180 dfvKTSTGf~~~gat~e~V~~m~~~~~~-----~~giKasGGI-rt~~~a~~~i~aGa~riGtS  237 (251)
T d1o0ya_         180 HFVKTSTGFGTGGATAEDVHLMKWIVGD-----EMGVKASGGI-RTFEDAVKMIMYGADRIGTS  237 (251)
T ss_dssp             SEEECCCSSSSCCCCHHHHHHHHHHHCT-----TSEEEEESSC-CSHHHHHHHHHTTCSEEEES
T ss_pred             ceeeccCCCCCCCcCHHHHHHHHHHhCC-----CceEeccCCc-CCHHHHHHHHHHhhHHhCCC
Confidence            977665543  45688888765554432     2444322100 01345677789999988554

>d1n7ka_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=96.60  E-value=0.063  Score=47.97  Aligned_cols=185  Identities=14%  Similarity=0.167  Sum_probs=119.4

Q ss_pred             EEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe--C---C
Q 015894          100 IVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT--P---N  174 (398)
Q Consensus       100 i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~--~---n  174 (398)
                      ++|-|+=      +-..+.++..++++.-.+.|+..+-+-    |.|++      .+.+.++. .++++.+.+  |   .
T Consensus        23 ~ID~TlL------~~~~T~~~i~~lc~~A~~~~~~avcV~----p~~v~------~a~~~l~~-s~v~v~tVigFP~G~~   85 (234)
T d1n7ka_          23 RIDSTLL------SPRATEEDVRNLVREASDYGFRCAVLT----PVYTV------KISGLAEK-LGVKLCSVIGFPLGQA   85 (234)
T ss_dssp             TEEEECC------CTTCCHHHHHHHHHHHHHHTCSEEEEC----HHHHH------HHHHHHHH-HTCCEEEEESTTTCCS
T ss_pred             HhhhcCC------CCCCCHHHHHHHHHHHHHhCCeEEEEC----cHhHH------HHHHHhhc-CCCceEEEEecCCCCC
Confidence            4666662      335788999999999999999877763    32221      22223322 357776655  3   1


Q ss_pred             -----HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHH
Q 015894          175 -----LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSK  249 (398)
Q Consensus       175 -----~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~  249 (398)
                           ..+++.|++.|+++|.+.+..+-         -.+...+.+.+.++.+++.|..+-+-+.       ....+++.
T Consensus        86 ~~~~k~~E~~~Ai~~GAdEID~Vin~~~---------~~~~~~~ev~~~~~~~~~~g~~lKVIlE-------t~~L~~~~  149 (234)
T d1n7ka_          86 PLEVKLVEAQTVLEAGATELDVVPHLSL---------GPEAVYREVSGIVKLAKSYGAVVKVILE-------APLWDDKT  149 (234)
T ss_dssp             CHHHHHHHHHHHHHHTCCEEEECCCGGG---------CHHHHHHHHHHHHHHHHHTTCEEEEECC-------GGGSCHHH
T ss_pred             cHHHHHHHHHHHHHcCCCeEEEEechhh---------hhhhhHHHHHHHHHHHhccCceEEEEEe-------ccccchHH
Confidence                 23678899999999999865432         2345567778888888888877664333       13457899


Q ss_pred             HHHHHHHHHhCCCCEEEEccCcCc----CCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeec
Q 015894          250 VAYVSKQLYDMGCSEISLGDTIGV----GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSS  324 (398)
Q Consensus       250 l~~~a~~l~~~Gad~I~L~DT~G~----~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~S  324 (398)
                      +...++...++|+|-|-  =+.|.    .+|.++..+....+..    .+++..-=-. --...+++-+++|+++|-+|
T Consensus       150 i~~a~~~a~~aGadFVK--TSTG~~~~gat~~~~~~l~~~~~~~----~vgIKasGGI-rt~~~a~~~i~aGa~rIGtS  221 (234)
T d1n7ka_         150 LSLLVDSSRRAGADIVK--TSTGVYTKGGDPVTVFRLASLAKPL----GMGVKASGGI-RSGIDAVLAVGAGADIIGTS  221 (234)
T ss_dssp             HHHHHHHHHHTTCSEEE--SCCSSSCCCCSHHHHHHHHHHHGGG----TCEEEEESSC-CSHHHHHHHHHTTCSEEEET
T ss_pred             HHHHHHHHHHhhhhhee--ecccccCCCCCHHHHHHHHHHhcCC----CCcEEeeCCc-CCHHHHHHHHHccCceeecc
Confidence            99999999999999654  44553    5677777766655431    2344332100 01245677789999987654

>d1p1xa_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Escherichia coli [TaxId: 562]

Probab=96.11  E-value=0.048  Score=49.31  Aligned_cols=206  Identities=15%  Similarity=0.162  Sum_probs=123.9

Q ss_pred             cEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhc--CCCEEEEecCCCCCcccCCCCHHHHHHHHHhc--cCCcEEEEe-
Q 015894           98 VKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSS--GLAVVEATSFVSPKWVPQLADAKDVMAAIQNV--EGARFPVLT-  172 (398)
Q Consensus        98 I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~a--Gv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~--~~~~l~~l~-  172 (398)
                      +.++|-|+=      .-..+.++..++.+.-.+.  |+-.+-    +.|.|+|      ...+.++..  +++++.+.+ 
T Consensus        12 ~~~iD~T~L------~~~~T~~~i~~lc~~A~~~~~~~aaVC----V~P~~v~------~a~~~l~~~~~~~v~v~tVig   75 (250)
T d1p1xa_          12 LKLMDLTTL------NDDDTDEKVIALCHQAKTPVGNTAAIC----IYPRFIP------IARKTLKEQGTPEIRIATVTN   75 (250)
T ss_dssp             HTTEEEECC------CTTCCHHHHHHHHHHTEETTEECSEEE----CCGGGHH------HHHHHHHHTTCTTSEEEEEES
T ss_pred             hhhccCCCC------CCCCCHHHHHHHHHHHHhhcCCeEEEE----EChHHHH------HHHHHhhhcCCCcceEEEEec
Confidence            346676662      2234566666666554443  443333    3566553      334455543  356776654 


Q ss_pred             -C----C----HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCC
Q 015894          173 -P----N----LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEG  243 (398)
Q Consensus       173 -~----n----~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~  243 (398)
                       |    .    ...++.|++.|+++|.+.+..+-..     .-..+...+.+..+.+.++..|..+-+-|..  +    .
T Consensus        76 FP~G~~~~e~K~~E~~~Ai~~GAdEID~Vin~~~l~-----~g~~~~v~~ei~~v~~~~~~~~~~lKVIlEt--~----~  144 (250)
T d1p1xa_          76 FPHGNDDIDIALAETRAAIAYGADEVDVVFPYRALM-----AGNEQVGFDLVKACKEACAAANVLLKVIIET--G----E  144 (250)
T ss_dssp             TTTCCSCHHHHHHHHHHHHHHTCSEEEEECCHHHHH-----TTCCHHHHHHHHHHHHHHHHTTCEEEEECCH--H----H
T ss_pred             cCCCCccHhHHHHHHHHHHHcCCCeEEEeecchhhc-----cccHHHHHHHHHHHHHhhccCCceEEEEEec--c----c
Confidence             3    1    2357888999999999998754331     1234556677778888888889877754431  1    1


Q ss_pred             CCCHHHHHHHHHHHHhCCCCEEEEccC--cCcCCHHHHHHHHHHHHhhCCCCeEEEEeC---CccchHHHHHHHHHH-hC
Q 015894          244 MVPPSKVAYVSKQLYDMGCSEISLGDT--IGVGTPGTVIPMLEAVLDAVPVDKLAVHFH---DTYGQALSNILASLQ-MG  317 (398)
Q Consensus       244 r~~~~~l~~~a~~l~~~Gad~I~L~DT--~G~~~P~~v~~lv~~l~~~~p~~~l~~H~H---nd~GlA~ANalaAl~-aG  317 (398)
                      -++.+.....++.+.+.|+|-|--+--  .+..+|+++.-+.+.+++.....++++..-   -|+..|.+-..++.+ .|
T Consensus       145 Ltd~e~i~~a~~ia~~aGadFvKTSTG~~~~gat~~~v~~m~~~i~~~~~~~~vgIKasGGIrt~~~a~~~i~~ga~~iG  224 (250)
T d1p1xa_         145 LKDEALIRKASEISIKAGADFIKTSTGKVAVNATPESARIMMEVIRDMGVEKTVGFKPAGGVRTAEDAQKYLAIADELFG  224 (250)
T ss_dssp             HCSHHHHHHHHHHHHHTTCSEEECCCSCSSCCCCHHHHHHHHHHHHHHTCTTTCEEECBSSCCSHHHHHHHHHHHHHHHC
T ss_pred             cCcHHHHHHHHHHHHHcCcCeEEecCCcCCCCCCHHHHHHHHHHhhhhccCcceeeEecCCCCCHHHHHHHHHHHHHHhC
Confidence            223444455678888999996544333  235678999999888886432234666542   234444444444443 57


Q ss_pred             CCEEeeccccCCC
Q 015894          318 ISTVDSSVSGLGG  330 (398)
Q Consensus       318 a~~VD~Sv~GlGe  330 (398)
                      .++++....-+|.
T Consensus       225 ~~~~~~~~fRiGa  237 (250)
T d1p1xa_         225 ADWADARHYRFGA  237 (250)
T ss_dssp             TTSCSTTTBCEEE
T ss_pred             ccccccCceeeeH
Confidence            7778877777776

>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Maize (Zea mays) [TaxId: 4577]

Probab=96.10  E-value=0.026  Score=51.40  Aligned_cols=176  Identities=16%  Similarity=0.204  Sum_probs=105.1

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCc--cc--C---------CCCHHHHHHHHHhc---cCCcEEEEeC-C---
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKW--VP--Q---------LADAKDVMAAIQNV---EGARFPVLTP-N---  174 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~--~p--~---------~~D~~~v~~~i~~~---~~~~l~~l~~-n---  174 (398)
                      ..+.+.-.++++.|.+.|+|.||+|+|.+.+.  .|  |         -.+.+.+++.++++   .++.+..+.. |   
T Consensus        27 ~P~~~~~~~~l~~l~~~G~DiiElGiPfSDP~aDGpvIq~a~~rAL~~G~~~~~~~~~~~~~r~~~~~p~ilm~Y~n~~~  106 (261)
T d1rd5a_          27 DPDLATTAEALRLLDGCGADVIELGVPCSDPYIDGPIIQASVARALASGTTMDAVLEMLREVTPELSCPVVLLSYYKPIM  106 (261)
T ss_dssp             SSCHHHHHHHHHHHHHTTCSSEEEECCCSCCTTSCHHHHHHHHHHHTTTCCHHHHHHHHHHHGGGCSSCEEEECCSHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCEEEECCCCCCcCcCCcceeeeeeeccccCcchhhhhhhhhcccccccCceeeeeeecchh
Confidence            45688889999999999999999999866321  01  0         01334455555432   3455555553 3   


Q ss_pred             HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHH
Q 015894          175 LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVS  254 (398)
Q Consensus       175 ~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a  254 (398)
                      ..+++.+.++|++.+-+.+-.-                +...+..+.++++|+....-+     +|   .++.+.+..++
T Consensus       107 ~~~~~~~~~~GvdG~IipDlp~----------------eE~~~~~~~~~~~gl~~I~lv-----aP---tt~~~Ri~~i~  162 (261)
T d1rd5a_         107 FRSLAKMKEAGVHGLIVPDLPY----------------VAAHSLWSEAKNNNLELVLLT-----TP---AIPEDRMKEIT  162 (261)
T ss_dssp             SCCTHHHHHTTCCEEECTTCBT----------------TTHHHHHHHHHHTTCEECEEE-----CT---TSCHHHHHHHH
T ss_pred             hHHHHHHHhcCceeeeecCccH----------------HHHHHHHHHHhccccceEEEe-----cc---CCchhHHHHHH
Confidence            2468889999999998854321                122456778899999764222     23   24556666655


Q ss_pred             HHHHhCC-CCEEEEccCcCcC--CHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHH-HHHhCCCEE
Q 015894          255 KQLYDMG-CSEISLGDTIGVG--TPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILA-SLQMGISTV  321 (398)
Q Consensus       255 ~~l~~~G-ad~I~L~DT~G~~--~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANala-Al~aGa~~V  321 (398)
                      +..  -| +..+...=+.|.-  .+.++.++++.+|+.. +.|+.+=    +|.....-.. ..++|||.|
T Consensus       163 ~~a--~gFvY~vs~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pi~vG----FGI~~~e~v~~~~~~gaDGv  226 (261)
T d1rd5a_         163 KAS--EGFVYLVSVNGVTGPRANVNPRVESLIQEVKKVT-NKPVAVG----FGISKPEHVKQIAQWGADGV  226 (261)
T ss_dssp             HHC--CSCEEEECSSCCBCTTSCBCTHHHHHHHHHHHHC-SSCEEEE----SCCCSHHHHHHHHHTTCSEE
T ss_pred             hcC--cchhhhhhccCcccccccchhHHHHHHHHhhhcc-CCCeEEE----cCCCCHHHHHHHHhcCCCEE
Confidence            422  23 2233444555544  4568999999999875 3444432    2333333333 355688744

>d1gqna_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Salmonella typhi [TaxId: 90370]

Probab=96.08  E-value=0.45  Score=42.44  Aligned_cols=201  Identities=11%  Similarity=0.036  Sum_probs=127.9

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh----ccCCcEEEEeCCH-h---------h----H
Q 015894          117 PAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN----VEGARFPVLTPNL-K---------G----F  178 (398)
Q Consensus       117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~----~~~~~l~~l~~n~-~---------~----i  178 (398)
                      +.++.++-+......|.|.+|+-...-.    ...+.+++.+.++.    .++..+..-+|.. +         .    +
T Consensus        26 ~~~~~~~~~~~~~~~~aD~vE~RlD~l~----~~~~~~~l~~~~~~lr~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll  101 (252)
T d1gqna_          26 DINSVKAEALAYREATFDILEWRVDHFM----DIASTQSVLTAARVIRDAMPDIPLLFTFRSAKEGGEQTITTQHYLTLN  101 (252)
T ss_dssp             SHHHHHHHHHHHTTSCCSEEEEEGGGCS----CTTCHHHHHHHHHHHHHHCTTSCEEEECCBGGGTCSBCCCHHHHHHHH
T ss_pred             CHHHHHHHHHHHhhcCCCEEEEEEcccc----ccCCHHHHHHHHHHHHHhcCCCCEEEEEechhhCCCCCCCHHHHHHHH
Confidence            4566667777788899999999864321    12345555554443    2345555544532 1         1    4


Q ss_pred             HHHHHcC-CCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894          179 EAAVAAG-AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL  257 (398)
Q Consensus       179 e~a~~~G-v~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l  257 (398)
                      +.+++.| ++.|.|-....+               +.+.+.++.+++.|..+-+..=. |    ....+.+.+.+..+++
T Consensus       102 ~~~~~~~~~d~iDiEl~~~~---------------~~~~~li~~a~~~~~~vI~S~Hd-f----~~TP~~~~l~~~~~~m  161 (252)
T d1gqna_         102 RAAIDSGLVDMIDLELFTGD---------------ADVKATVDYAHAHNVYVVMSNHD-F----HQTPSAEEMVSRLRKM  161 (252)
T ss_dssp             HHHHHHSCCSEEEEEGGGCH---------------HHHHHHHHHHHHTTCEEEEEEEE-S----SCCCCHHHHHHHHHHH
T ss_pred             HHHHHcCCCceEeccccccH---------------HHHHHHHHHhhcCCCeEEEEecC-C----CCCCCHHHHHHHHHHH
Confidence            5677888 789998655332               23345677888888876532211 2    2234568999999999


Q ss_pred             HhCCCCEEEEccCcCcCCHHHHHHHHHHH---HhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCC
Q 015894          258 YDMGCSEISLGDTIGVGTPGTVIPMLEAV---LDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYA  334 (398)
Q Consensus       258 ~~~Gad~I~L~DT~G~~~P~~v~~lv~~l---~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a  334 (398)
                      .+.|||.+-|+=+  .-++.++.+++...   ++..+..|+-.-+=-.  +|...=+.+-..|....-+++.   + |- 
T Consensus       162 ~~~gaDivKia~~--a~~~~D~~~ll~~~~~~~~~~~~~P~I~~~MG~--~G~~SRi~~~~~GS~~tya~~~---~-~s-  232 (252)
T d1gqna_         162 QALGADIPKIAVM--PQSKHDVLTLLTATLEMQQHYADRPVITMSMAK--EGVISRLAGEVFGSAATFGAVK---Q-AS-  232 (252)
T ss_dssp             HHTTCSEEEEEEC--CSSHHHHHHHHHHHHHHHHHTCSSCCEEEECTT--TTHHHHHCHHHHTCCEEECBSS---S-CC-
T ss_pred             HHhCCCeEEEEec--CCCHHHHHHHHHHHHHHHHhCCCCCEEEEecCC--cchhHHHHHHHhCCceEeccCC---C-CC-
Confidence            9999999888754  23577777776554   4444554544432222  3456667777789998888874   3 33 


Q ss_pred             CCCCCCccHHHHHHHHHh
Q 015894          335 KGASGNVATEDVVYMLNG  352 (398)
Q Consensus       335 ~graGNa~lE~vv~~L~~  352 (398)
                        ..|+.+++++...|+.
T Consensus       233 --APGQ~~~~~l~~~l~~  248 (252)
T d1gqna_         233 --APGQIAVNDLRSVLMI  248 (252)
T ss_dssp             --STTCCBHHHHHHHHHH
T ss_pred             --CCCCCCHHHHHHHHHH
Confidence              4669999998887764

>d1ad1a_ c.1.21.1 (A:) Dihydropteroate synthetase {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Staphylococcus aureus [TaxId: 1280]

Probab=95.77  E-value=0.39  Score=43.30  Aligned_cols=198  Identities=13%  Similarity=0.130  Sum_probs=111.7

Q ss_pred             EEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCC-CCcccCCCCHHHHHHHHH---hcc--CCcEEEEeC
Q 015894          100 IVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVS-PKWVPQLADAKDVMAAIQ---NVE--GARFPVLTP  173 (398)
Q Consensus       100 i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~-~~~~p~~~D~~~v~~~i~---~~~--~~~l~~l~~  173 (398)
                      |+-+|. |-..--|..++.+..++-++.|.+.|.+.|++|--.+ |..-| ....+|+.+.++   .+.  ++.+++=++
T Consensus         8 IlN~Tp-DSFsdgg~~~~~~~a~~~~~~m~~~GAdiIDIGaeSTrPga~~-is~~eE~~Rl~pvi~~l~~~~~~iSIDT~   85 (264)
T d1ad1a_           8 ILNVTP-DSFSDGGKFNNVESAVTRVKAMMDEGADIIDVGGVSTRPGHEM-ITVEEELNRVLPVVEAIVGFDVKISVDTF   85 (264)
T ss_dssp             EEECCG-GGCSSTTTTCSHHHHHHHHHHHHHTTCSEEEEESCCCSTTCCC-CCHHHHHHHHHHHHHHHTTSSSEEEEECS
T ss_pred             EEeCCC-CCCCCCCcCCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCCc-CCHHHHHHhhhhHhhhhcccCcccchhhh
Confidence            455554 5444445567889999999999999999999996433 33222 122333333332   232  444444456


Q ss_pred             CHhhHHHHHHcCCCEEEEe-ccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCH-----
Q 015894          174 NLKGFEAAVAAGAKEVAIF-ASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPP-----  247 (398)
Q Consensus       174 n~~~ie~a~~~Gv~~v~i~-~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~-----  247 (398)
                      +.+-.+.|++.|++.|.=. ....|                  .++.+.+++++..+.  +|..-+.|..  .+.     
T Consensus        86 ~~eVa~~al~~Ga~iINDVs~g~~d------------------~~~~~~va~~~~~~i--lmH~~~~~~~--~~~~~~v~  143 (264)
T d1ad1a_          86 RSEVAEACLKLGVDIINDQWAGLYD------------------HRMFQVVAKYDAEIV--LMHNGNGNRD--EPVVEEML  143 (264)
T ss_dssp             CHHHHHHHHHTTCCEEEETTTTSSC------------------THHHHHHHHTTCEEE--EECCCCTTCC--SCHHHHHH
T ss_pred             hHHHHHHHHhcCCcEeecccccccc------------------ccHHHHHhhcCccee--eeeecccccc--Cccchhhh
Confidence            7788899999999998842 22222                  134566778887654  4543222211  111     


Q ss_pred             HHHHHHHHHHHhCCCC--EEEEccCcCcC-CHHHHHHHHHHHHhhC-CCCeEE----------------EEeCCccchHH
Q 015894          248 SKVAYVSKQLYDMGCS--EISLGDTIGVG-TPGTVIPMLEAVLDAV-PVDKLA----------------VHFHDTYGQAL  307 (398)
Q Consensus       248 ~~l~~~a~~l~~~Gad--~I~L~DT~G~~-~P~~v~~lv~~l~~~~-p~~~l~----------------~H~Hnd~GlA~  307 (398)
                      .++.+.++.+..+|++  .|.+-=-.|.+ ++++=.++++.+.... -+.|+-                ...++-..-.+
T Consensus       144 ~~~~~~~~~~~~~Gi~~~~IilDPGiGFgKt~~~n~~ll~~l~~~~~~g~PiLiG~SRKsfig~l~g~~~~~~~r~~~t~  223 (264)
T d1ad1a_         144 TSLLAQAHQAKIAGIPSNKIWLDPGIGFAKTRNEEAEVMARLDELVATEYPVLLATSRKRFTKEMMGYDTTPVERDEVTA  223 (264)
T ss_dssp             HHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHCHHHHHTTCSCBEECCTTSHHHHTTSSSCCCGGGGHHHHH
T ss_pred             hHHHHHHHHHHhhccccceEEeccCcCccccchhHHHHHHHHHHhhccCCceeeeccHHHHHHHHhCCCCChHHhhHHHH
Confidence            2444455567778985  46554455544 4566666666554321 112221                12222233335


Q ss_pred             HHHHHHHHhCCCEE
Q 015894          308 SNILASLQMGISTV  321 (398)
Q Consensus       308 ANalaAl~aGa~~V  321 (398)
                      |.+..|+..||++|
T Consensus       224 a~~~~a~~~Ga~ii  237 (264)
T d1ad1a_         224 ATTAYGIMKGVRAV  237 (264)
T ss_dssp             HHHHHHHHHTCCEE
T ss_pred             HHHHHHHHCCCCEE
Confidence            55566777888876

>d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class II FBP aldolase
domain: Tagatose-1,6-bisphosphate aldolase
species: Escherichia coli [TaxId: 562]

Probab=95.36  E-value=0.29  Score=44.70  Aligned_cols=190  Identities=15%  Similarity=0.168  Sum_probs=125.1

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh---ccCCcEEEEe---CCHhhHHHHHHcCCC
Q 015894          114 NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN---VEGARFPVLT---PNLKGFEAAVAAGAK  187 (398)
Q Consensus       114 ~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~---~~~~~l~~l~---~n~~~ie~a~~~Gv~  187 (398)
                      +.+..++...++++-.+..-+.|--.+...-++.    ..+.+...++.   ..++.+....   .+.+.+++++++|.+
T Consensus        23 Nv~~~e~~~avi~AAe~~~sPvIlq~~~~~~~~~----~~~~~~~~~~~~a~~~~vpV~lHlDH~~~~e~i~~ai~~Gft   98 (284)
T d1gvfa_          23 NIHNAETIQAILEVCSEMRSPVILAGTPGTFKHI----ALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVR   98 (284)
T ss_dssp             ECCSHHHHHHHHHHHHHHTCCCEEEECTTHHHHS----CHHHHHHHHHHHHHHTTSCBEEEEEEECCHHHHHHHHHTTCC
T ss_pred             EECCHHHHHHHHHHHHHHCCCEEEEcCHhHHhhC----CHHHHHHHHHHHHHhcCCeEEeeeccccchHHHHHHHhcCCC
Confidence            3577888888999999999987644332211111    23334334432   2344444432   467889999999999


Q ss_pred             EEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCC--------CCCCHHHHHHHHHHHHh
Q 015894          188 EVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVE--------GMVPPSKVAYVSKQLYD  259 (398)
Q Consensus       188 ~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~--------~r~~~~~l~~~a~~l~~  259 (398)
                      .|.+=.|          ..+.+|.++..++++++|+..|+.|++.|-..-|.++.        ..++|+...++++   +
T Consensus        99 SVMiD~S----------~lp~eeNi~~t~~vv~~ah~~gv~VE~ElG~v~g~ed~~~~~~~~~~~T~peea~~Fv~---~  165 (284)
T d1gvfa_          99 SAMIDGS----------HFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVE---L  165 (284)
T ss_dssp             EEEECCT----------TSCHHHHHHHHHHHHHHHHHTTCEEEEEESCCC-----------CCSSCCHHHHHHHHH---H
T ss_pred             eEEEECC----------CCCHHHHHHHHHHHHHHHHhhccceeeeeeeeccccccccccccccccCCHHHHHHHHH---H
Confidence            8887332          23568999999999999999999999888765443331        2478888887765   5


Q ss_pred             CCCCEEEE--ccCcCcCC--HHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          260 MGCSEISL--GDTIGVGT--PGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       260 ~Gad~I~L--~DT~G~~~--P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      .|+|.+.+  .-+=|.-.  |.==.++++.+++..+ +||.+|+  .-|..--....|++.|+.-|+.
T Consensus       166 TgvD~LAvaiGt~HG~y~~~p~l~~~~L~~i~~~~~-vPLVlHG--gSG~~~e~i~~ai~~Gi~KiNi  230 (284)
T d1gvfa_         166 TGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVD-VPLVLHG--ASDVPDEFVRRTIELGVTKVNV  230 (284)
T ss_dssp             HCCSEEEECSSCCSSCCSSCCCCCHHHHHHHHHHCC-SCEEECC--CTTCCHHHHHHHHHTTEEEEEE
T ss_pred             hCCCEEeeecCceeeccCCCCccccchhhhhhcccc-CCeEeeC--CCCCCHHHHHHHHHcCeEEEEe
Confidence            79997544  33333322  3222356788888776 5788865  5577778888999999876643

>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.18  E-value=0.056  Score=49.25  Aligned_cols=35  Identities=23%  Similarity=0.246  Sum_probs=28.7

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHH
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAK  154 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~  154 (398)
                      .+.+.-+++++.|.+.|+|.||+|+|.+.+    ++|-.
T Consensus        28 P~~~~~~~~~~~l~~~GaDiiElGiPfSDP----~aDGp   62 (267)
T d1qopa_          28 PGIEQSLKIIDTLIDAGADALELGVPFSDP----LADGP   62 (267)
T ss_dssp             SCHHHHHHHHHHHHHTTCSSEEEECCCSCC----TTCCH
T ss_pred             CCHHHHHHHHHHHHHcCCCEEEECCCCCcc----cccch
Confidence            467888999999999999999999987642    35654

>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Dihydropyrimidine dehydrogenase, domain 4
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=95.16  E-value=0.92  Score=41.02  Aligned_cols=210  Identities=13%  Similarity=0.138  Sum_probs=111.5

Q ss_pred             HHHHHHHHhcCCCEEEEecCCC---------CCcc--c-----------------CC--CCHHHHHHHHH----hccCCc
Q 015894          122 VELIKLLVSSGLAVVEATSFVS---------PKWV--P-----------------QL--ADAKDVMAAIQ----NVEGAR  167 (398)
Q Consensus       122 ~~ia~~L~~aGv~~IEvG~~~~---------~~~~--p-----------------~~--~D~~~v~~~i~----~~~~~~  167 (398)
                      .++.+.+.++|+..+++++...         |+..  +                 .+  ...+..++.++    ..++..
T Consensus        25 ~~~~~~~~~~G~G~vv~ktvt~~~~~~~n~~pr~~~~~~~~~~~~~~~~~~~n~~g~~~~g~~~~~~~i~~~~~~~~~~~  104 (312)
T d1gtea2          25 SSMIRRAFEAGWGFALTKTFSLDKDIVTNVSPRIVRGTTSGPMYGPGQSSFLNIELISEKTAAYWCQSVTELKADFPDNI  104 (312)
T ss_dssp             HHHHHHHHHHTCSEEECCCBCCGGGCCCCCSSCEEECCTTCSCCSSCCSCEEECCCSCSSCHHHHHHHHHHHHHHCTTSE
T ss_pred             HHHHHHHHHcCCcEEEEeeecCCccccCCCCCcEEeccCCccccccccccccccccccccchhhhhhhhccccccccccc
Confidence            5778889999999999985421         1000  0                 00  12344444443    234443


Q ss_pred             EEEEe---CCHhhH----HHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecC
Q 015894          168 FPVLT---PNLKGF----EAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAREL-SIPVRGYLSCVVGC  239 (398)
Q Consensus       168 l~~l~---~n~~~i----e~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~~v~~~l~~~fg~  239 (398)
                      ..+..   .+.+++    +.+.+.|+|.+.+=++.-.......++.......+.+.++++..|+. .+++.+-+.     
T Consensus       105 ~~~~~~~~~~~~d~~~~a~~~~~~gad~lelN~scPn~~~~~~~~~~~~~~~~~~~~i~~~v~~~~~~pv~vKl~-----  179 (312)
T d1gtea2         105 VIASIMCSYNKNDWMELSRKAEASGADALELNLSCPHGMGERGMGLACGQDPELVRNICRWVRQAVQIPFFAKLT-----  179 (312)
T ss_dssp             EEEEECCCSCHHHHHHHHHHHHHTTCSEEEEECCCBCCCC-----SBGGGCHHHHHHHHHHHHHHCSSCEEEEEC-----
T ss_pred             cccccccccchhHHHHHHHHhccCCCCeEeeccCCCCcccccccchhhhhhHHHHHHHHHHHhhccCCceeeccc-----
Confidence            33322   344443    34456899977664432111111112211111123345556666554 556654443     


Q ss_pred             CCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcC----------------------------CHHHHHHHHHHHHhhCC
Q 015894          240 PVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVG----------------------------TPGTVIPMLEAVLDAVP  291 (398)
Q Consensus       240 ~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~----------------------------~P~~v~~lv~~l~~~~p  291 (398)
                      |+.     +...++++.+.++|++.|.+.+|.+.+                            ......+.++.+++..|
T Consensus       180 ~~~-----~~~~~i~~~~~~~g~~gi~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~gg~sG~~i~~~al~~v~~~~~~~~  254 (312)
T d1gtea2         180 PNV-----TDIVSIARAAKEGGADGVTATNTVSGLMGLKADGTPWPAVGAGKRTTYGGVSGTAIRPIALRAVTTIARALP  254 (312)
T ss_dssp             SCS-----SCHHHHHHHHHHHTCSEEEECCCEEECCCBCTTSCBSSCBTTTTBBCCEEEESGGGHHHHHHHHHHHHHHST
T ss_pred             ccc-----hhHHHHHHHHHHhcccceEEEeecccccccccccccccccccccccccccccCcCcchhhHHHHHHHHHHcC
Confidence            222     123467788889999999999885311                            12234567888888887


Q ss_pred             CCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHHh
Q 015894          292 VDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLNG  352 (398)
Q Consensus       292 ~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~~  352 (398)
                      +++|..=+==..+   .-++.++.+||+.|...-.=+-        .|.--++++...|+.
T Consensus       255 ~ipIi~~GGI~~~---~d~~~~l~aGA~~Vqv~ta~~~--------~G~~~i~~i~~~L~~  304 (312)
T d1gtea2         255 GFPILATGGIDSA---ESGLQFLHSGASVLQVCSAVQN--------QDFTVIQDYCTGLKA  304 (312)
T ss_dssp             TCCEEEESSCCSH---HHHHHHHHTTCSEEEESHHHHT--------SCTTHHHHHHHHHHH
T ss_pred             CCcEEEEcCCCCH---HHHHHHHHcCCCeeEECHhhhc--------cChHHHHHHHHHHHH
Confidence            6555432222222   3456678899999987654442        345555666655543

>d1h1ya_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Rice (Oryza sativa) [TaxId: 4530]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=95.14  E-value=0.33  Score=42.48  Aligned_cols=170  Identities=15%  Similarity=0.130  Sum_probs=108.7

Q ss_pred             HHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEE--EeCCH-hhHHHHHHcCCCEEEEeccCchH
Q 015894          122 VELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPV--LTPNL-KGFEAAVAAGAKEVAIFASASES  198 (398)
Q Consensus       122 ~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~n~-~~ie~a~~~Gv~~v~i~~~~Sd~  198 (398)
                      .+-++.+.+.|++.|-+-... ..++|.+.=..+.++.++...+..+-+  ++.+. +-++..+++|++.|.+..-.+. 
T Consensus        17 ~~ei~~l~~~~~d~iHiDimD-g~Fvpn~t~~~~~i~~i~~~~~~~~dvHLMv~~p~~~i~~~~~~g~~~I~~H~E~~~-   94 (220)
T d1h1ya_          17 AAEADRMVRLGADWLHMDIMD-GHFVPNLTIGAPVIQSLRKHTKAYLDCHLMVTNPSDYVEPLAKAGASGFTFHIEVSR-   94 (220)
T ss_dssp             HHHHHHHHHTTCSEEEEEEEB-SSSSSCBCBCHHHHHHHHTTCCSEEEEEEESSCGGGGHHHHHHHTCSEEEEEGGGCT-
T ss_pred             HHHHHHHHHcCCCEEEEeeec-CccccccccCchhhhhhhhhcchhhhhHHHhcchhhhhHHhhhcccceeeecccccc-
Confidence            345667888999977764211 112232222235566677655554444  44443 4578888999999998765322 


Q ss_pred             HHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCC-CCEEEEc----cCcCc
Q 015894          199 FSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMG-CSEISLG----DTIGV  273 (398)
Q Consensus       199 ~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~G-ad~I~L~----DT~G~  273 (398)
                                    +...++++++|+.|..+...+.     |.   ++++.+.++..   ..+ +|.+.+.    .-.|.
T Consensus        95 --------------~~~~~~i~~i~~~g~~~Glal~-----p~---t~~~~~~~~l~---~~~~~d~vlim~v~PG~~GQ  149 (220)
T d1h1ya_          95 --------------DNWQELIQSIKAKGMRPGVSLR-----PG---TPVEEVFPLVE---AENPVELVLVMTVEPGFGGQ  149 (220)
T ss_dssp             --------------TTHHHHHHHHHHTTCEEEEEEC-----TT---SCGGGGHHHHH---SSSCCSEEEEESSCTTCSSC
T ss_pred             --------------hhHHHHHHHHHHcCCCcceeec-----cc---cchhHHHHHHh---cccccceEEEEecCCCCccc
Confidence                          1123567888999998875443     32   34555444432   222 5655443    44565


Q ss_pred             CCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894          274 GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD  322 (398)
Q Consensus       274 ~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD  322 (398)
                      ..-..+.+.|+.+++..|+..|.+    |=|.-.-|+-...++||+.+=
T Consensus       150 ~f~~~~l~kI~~l~~~~~~~~I~V----DGGIn~~~i~~l~~aGad~~V  194 (220)
T d1h1ya_         150 KFMPEMMEKVRALRKKYPSLDIEV----DGGLGPSTIDVAASAGANCIV  194 (220)
T ss_dssp             CCCGGGHHHHHHHHHHCTTSEEEE----ESSCSTTTHHHHHHHTCCEEE
T ss_pred             ccchhhhHHHHHHHhcCCCceEEE----EecCCHHHHHHHHHCCCCEEE
Confidence            565778888999999899877777    778888888999999999663

>d1ujpa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Tryptophan biosynthesis enzymes
domain: Trp synthase alpha-subunit
species: Thermus thermophilus [TaxId: 274]

Probab=94.36  E-value=0.061  Score=49.13  Aligned_cols=157  Identities=15%  Similarity=0.150  Sum_probs=86.1

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCc--cc--C---------CCCHHHHHHHHHh---ccCCcEEEEeC-CH---
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKW--VP--Q---------LADAKDVMAAIQN---VEGARFPVLTP-NL---  175 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~--~p--~---------~~D~~~v~~~i~~---~~~~~l~~l~~-n~---  175 (398)
                      .+.+.-+++++.|.+ |+|.||+|+|.+.+.  .|  |         -.+.+.+++.+++   ..++.+..|+. |.   
T Consensus        27 P~~~~~~~~l~~l~~-gaDiiElGiPfSDP~ADGpvIq~A~~rAL~~G~~~~~~~~~~~~~r~~~~~pivlm~Y~N~i~~  105 (271)
T d1ujpa_          27 PSREGFLQAVEEVLP-YADLLEIGLPYSDPLGDGPVIQRASELALRKGMSVQGALELVREVRALTEKPLFLMTYLNPVLA  105 (271)
T ss_dssp             SCHHHHHHHHHHHGG-GCSSEEEECCCCC----CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCCSCEEEECCHHHHHH
T ss_pred             CCHHHHHHHHHHHHc-CCCEEEeCCCCCCcccCCCeeeeeeeeccccccchhhHHHHHHHHhcccCCcEEEEeechhhhh
Confidence            467778899999976 999999999876321  01  0         0133344444443   23555555653 42   


Q ss_pred             hh----HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHH
Q 015894          176 KG----FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVA  251 (398)
Q Consensus       176 ~~----ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~  251 (398)
                      .|    ++.+.++|++.+-+.+-.-            ++    ..+....++++|+.... +.    .|   .++++.+.
T Consensus       106 ~G~~~F~~~~~~aGvdGliipDLP~------------ee----~~~~~~~~~~~gl~~I~-lv----sP---tT~~eRi~  161 (271)
T d1ujpa_         106 WGPERFFGLFKQAGATGVILPDLPP------------DE----DPGLVRLAQEIGLETVF-LL----AP---TSTDARIA  161 (271)
T ss_dssp             HCHHHHHHHHHHHTCCEEECTTCCG------------GG----CHHHHHHHHHHTCEEEC-EE----CT---TCCHHHHH
T ss_pred             CCchhHhHHHhhcCceeEeccchhh------------hh----HHHHHHHhhccccceee-cc----CC---CcchHHHH
Confidence            23    4677889999888754311            11    23456778889997642 11    23   24566665


Q ss_pred             HHHHHHHhCC-CCEEEEccCcCc--CCHHHHHHHHHHHHhhCCCCe--EEEEeC
Q 015894          252 YVSKQLYDMG-CSEISLGDTIGV--GTPGTVIPMLEAVLDAVPVDK--LAVHFH  300 (398)
Q Consensus       252 ~~a~~l~~~G-ad~I~L~DT~G~--~~P~~v~~lv~~l~~~~p~~~--l~~H~H  300 (398)
                      .+++..  -| +..+...-++|.  ..|.++.++++.+|+.. +.|  +||=.+
T Consensus       162 ~i~~~s--~GFIY~Vs~~GvTG~~~~~~~~~~~~i~~ik~~t-~~Pv~vGFGIs  212 (271)
T d1ujpa_         162 TVVRHA--TGFVYAVSVTGVTGMRERLPEEVKDLVRRIKART-ALPVAVGFGVS  212 (271)
T ss_dssp             HHHTTC--CSCEEEECC------------CCHHHHHHHHTTC-CSCEEEESCCC
T ss_pred             HHHHhC--cchhhhhcccCccCccccchHHHHHHHHhhhccc-cCCeEEeCCCC
Confidence            554321  13 233455555665  45788999999999764 334  444443

>d1ajza_ c.1.21.1 (A:) Dihydropteroate synthetase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Escherichia coli [TaxId: 562]

Probab=94.05  E-value=0.91  Score=41.18  Aligned_cols=172  Identities=17%  Similarity=0.214  Sum_probs=103.9

Q ss_pred             CCccEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCC-CCcccCCCCHHHHHHHHH---hc---cCCc
Q 015894           95 PGFVKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVS-PKWVPQLADAKDVMAAIQ---NV---EGAR  167 (398)
Q Consensus        95 p~~I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~-~~~~p~~~D~~~v~~~i~---~~---~~~~  167 (398)
                      |+=+-|+-+|+ |-..--|..++.+..++-++.|.+.|.+.|++|--.. |...| ....+|+.+.++   .+   .+..
T Consensus        15 P~IMGIlNvTP-DSFsdgg~~~~~~~a~~~a~~mi~~GAdiIDIGgeSTrPga~~-vs~eeE~~Rl~pvi~~l~~~~~~~   92 (282)
T d1ajza_          15 PHVMGILNVTP-DSFSDGGTHNSLIDAVKHANLMINAGATIIDVGGESTRPGAAE-VSVEEELQRVIPVVEAIAQRFEVW   92 (282)
T ss_dssp             CEEEEEEECCT-TTSTTTTCSSHHHHHHHHHHHHHHHTCSEEEEESSCCSTTCCC-CCHHHHHHHHHHHHHHHHHHCCCE
T ss_pred             CeEEEEEeCCC-CCCCCCCcCCCHHHHHHHHHHHHHCCCCEEEECCccccccccC-CcHHHHHHHHHHHHHHHhhcccce
Confidence            54456777776 6666555667888899999999999999999996443 43322 112233333322   22   2444


Q ss_pred             EEEEeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC---
Q 015894          168 FPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGM---  244 (398)
Q Consensus       168 l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r---  244 (398)
                      +++=+++.+-.+.|+++|++.|.=....++           ++.       ++.+++.+..+.  +|+.-|.|..-.   
T Consensus        93 iSIDT~~~eVa~~al~~Ga~iINDvsg~~~-----------~~~-------~~~va~~~~~~v--lmh~~g~p~~~~~~~  152 (282)
T d1ajza_          93 ISVDTSKPEVIRESAKVGAHIINDIRSLSE-----------PGA-------LEAAAETGLPVC--LMHMQGNPKTMQEAP  152 (282)
T ss_dssp             EEEECCCHHHHHHHHHTTCCEECCTTTTCS-----------TTH-------HHHHHHHTCCEE--EECCSSCTTCCSCCC
T ss_pred             EEEEecChHHHHHHHhcCceEEechhhccc-----------chh-------HHHhhccCceEE--EeccCCCccccccCC
Confidence            444456777789999999998865333222           122       233445565553  555555443211   


Q ss_pred             --CC-----HHHHHHHHHHHHhCCC--CEEEEccCcCcCC-HHHHHHHHHHHHh
Q 015894          245 --VP-----PSKVAYVSKQLYDMGC--SEISLGDTIGVGT-PGTVIPMLEAVLD  288 (398)
Q Consensus       245 --~~-----~~~l~~~a~~l~~~Ga--d~I~L~DT~G~~~-P~~v~~lv~~l~~  288 (398)
                        .+     .+++.+..+.+.++|+  +.|.|==-.|.+. +.+-.++++.+..
T Consensus       153 ~y~dv~~~v~~~~~~~~~~~~~~GI~~~~IilDPGiGFgK~~~~n~~ll~~l~~  206 (282)
T d1ajza_         153 KYDDVFAEVNRYFIEQIARCEQAGIAKEKLLLDPGFGFGKNLSHNYSLLARLAE  206 (282)
T ss_dssp             CCSCHHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTGGG
T ss_pred             cccchhhhhHHHHHHHHHHHHHcCCcHhhEecCCCcCcCCChhhhHHHHhhcch
Confidence              11     1566667778888998  5676655566654 6677777766543

>d1tx2a_ c.1.21.1 (A:) Dihydropteroate synthetase {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Bacillus anthracis [TaxId: 1392]

Probab=93.80  E-value=0.54  Score=42.53  Aligned_cols=200  Identities=16%  Similarity=0.178  Sum_probs=112.4

Q ss_pred             cEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCC-CCcccCCCCHHHHHHHHH-------hccCCcEE
Q 015894           98 VKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVS-PKWVPQLADAKDVMAAIQ-------NVEGARFP  169 (398)
Q Consensus        98 I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~-~~~~p~~~D~~~v~~~i~-------~~~~~~l~  169 (398)
                      +-|+-+|. |-..--|..++.+..++-++.|.+.|.+.|++|--.+ |..-+  -++++..+.+.       +..+..++
T Consensus        22 MGIlNiTp-DSFsdgg~~~~~~~a~~~a~~~i~~GAdiIDIGaeSTrPg~~~--is~~eE~~rl~p~i~~~~~~~~~~iS   98 (273)
T d1tx2a_          22 MGILNVTP-DSFSDGGSYNEVDAAVRHAKEMRDEGAHIIDIGGESTRPGFAK--VSVEEEIKRVVPMIQAVSKEVKLPIS   98 (273)
T ss_dssp             EEECCCCC-CTTCSSCBHHHHHHHHHHHHHHHHTTCSEEEEESCC----CCC--CCHHHHHHHHHHHHHHHHHHSCSCEE
T ss_pred             EEEEeCCC-CCCCCCCcCCCHHHHHHHHHHHHHCCCCEEEeeceeccccccc--cCHHHHHHhhchhHHhhhccceEEEe
Confidence            34555555 4444444456888899999999999999999996433 43222  13333333322       12355555


Q ss_pred             EEeCCHhhHHHHHHcCCCEEEEeccC-chHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCC---
Q 015894          170 VLTPNLKGFEAAVAAGAKEVAIFASA-SESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMV---  245 (398)
Q Consensus       170 ~l~~n~~~ie~a~~~Gv~~v~i~~~~-Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~---  245 (398)
                      +=+++.+-.+.|+++|++.|.=..+. .|.                  .+.+.+++.+..+.  +|..-+.|.....   
T Consensus        99 IDT~~~~Va~~al~~G~~iINDvsg~~~D~------------------~m~~~~~~~~~~~v--lmH~~~~~~~~~~~~~  158 (273)
T d1tx2a_          99 IDTYKAEVAKQAIEAGAHIINDIWGAKAEP------------------KIAEVAAHYDVPII--LMHNRDNMNYRNLMAD  158 (273)
T ss_dssp             EECSCHHHHHHHHHHTCCEEEETTTTSSCT------------------HHHHHHHHHTCCEE--EECCCSCCCCSSHHHH
T ss_pred             hHHhhHHHHHHHHHcCCeEEeccccccchh------------------HHHHHHHhhccccc--ccccccccccccccch
Confidence            55677888899999999988743322 221                  23345556666654  4543332221110   


Q ss_pred             CHHHHHHHHHHHHhCCCCE--EEEccCcCcCC-HHHHHHHHHHHHhh----CCCCeEEE------------EeCCccchH
Q 015894          246 PPSKVAYVSKQLYDMGCSE--ISLGDTIGVGT-PGTVIPMLEAVLDA----VPVDKLAV------------HFHDTYGQA  306 (398)
Q Consensus       246 ~~~~l~~~a~~l~~~Gad~--I~L~DT~G~~~-P~~v~~lv~~l~~~----~p~~~l~~------------H~Hnd~GlA  306 (398)
                      -..++.+-.+.+.++|+..  |.+-=-.|... +.+-.++++.+..-    +|. -+++            ..++...-.
T Consensus       159 ~~~~~~~~i~~~~~~GI~~~~IiiDPGiGFgK~~~~n~~ll~~i~~l~~~g~Pi-lvG~SRKsfig~~~~~~~~eRl~~T  237 (273)
T d1tx2a_         159 MIADLYDSIKIAKDAGVRDENIILDPGIGFAKTPEQNLEAMRNLEQLNVLGYPV-LLGTSRKSFIGHVLDLPVEERLEGT  237 (273)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTGGGGGGGCSCB-EEECTTCHHHHHHHTCCGGGCHHHH
T ss_pred             hhhhHHHHHHHHHHcCCChheEecCccCCccchHHHHHHHHhhhcccccCCCcE-EEEehHHHHHHHHhCCCHHHhhHHH
Confidence            0134555677788899853  55544444433 45555566555421    242 2222            234444445


Q ss_pred             HHHHHHHHHhCCCEE
Q 015894          307 LSNILASLQMGISTV  321 (398)
Q Consensus       307 ~ANalaAl~aGa~~V  321 (398)
                      +|.+..|+..||++|
T Consensus       238 la~~~~a~~~Ga~il  252 (273)
T d1tx2a_         238 GATVCLGIEKGCEFV  252 (273)
T ss_dssp             HHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHHCCCCEE
Confidence            666667888888876

>d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: KguE-like
domain: Hypothetical protein PA2260
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=93.76  E-value=0.14  Score=45.04  Aligned_cols=186  Identities=11%  Similarity=-0.062  Sum_probs=99.6

Q ss_pred             HHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC------------C-HhhHHHHHHcCCCEE
Q 015894          123 ELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP------------N-LKGFEAAVAAGAKEV  189 (398)
Q Consensus       123 ~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~------------n-~~~ie~a~~~Gv~~v  189 (398)
                      .+++.+.++|++.||+.....+    .-.+.+++.+.++. .+.++...++            . .+-++.|.+.|++.|
T Consensus        23 ~~l~~~a~~G~dgIEi~~~~~~----~~~~~~~l~~~~~~-~GL~i~~~~~~~~~~~~~~~~~~~~~~i~~A~~LG~~~v   97 (250)
T d1yx1a1          23 SFLPLLAMAGAQRVELREELFA----GPPDTEALTAAIQL-QGLECVFSSPLELWREDGQLNPELEPTLRRAEACGAGWL   97 (250)
T ss_dssp             GGHHHHHHHTCSEEEEEGGGCS----SCCCHHHHHHHHHH-TTCEEEEEEEEEEECTTSSBCTTHHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHHhCCCEEEEecccCC----CcchHHHHHHHHHH-cCCEEEEecccccccCchhhHHHHHHHHHHHHHhCCCEE
Confidence            4678889999999999642211    11466666666654 2454433221            1 134677788999999


Q ss_pred             EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcc
Q 015894          190 AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGD  269 (398)
Q Consensus       190 ~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~D  269 (398)
                      ++...-...             .+.+.++.++|++.|+.+.....     +...-.+++....+.+.+.......-...|
T Consensus        98 ~~~~g~~~~-------------~~~l~~l~~~a~~~Gv~l~iE~h-----~~~~~~~~~~~~~~~~~~~~~~p~vg~~~D  159 (250)
T d1yx1a1          98 KVSLGLLPE-------------QPDLAALGRRLARHGLQLLVEND-----QTPQGGRIEVLERFFRLAERQQLDLAMTFD  159 (250)
T ss_dssp             EEEEECCCS-------------SCCHHHHHHHHTTSSCEEEEECC-----SSHHHHCHHHHHHHHHHHHHTTCSEEEEEE
T ss_pred             EEeecccch-------------hHHHHHHHHHHHHcCCEEEEEeC-----CCcccCCHHHHHHHHHHhhccCCccccccc
Confidence            887653221             12355677888999987642111     000011333434444333322233333457


Q ss_pred             CcCcCCH-HHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHH
Q 015894          270 TIGVGTP-GTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVY  348 (398)
Q Consensus       270 T~G~~~P-~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~  348 (398)
                      +.=...- ....+.++.+.   |- -.++|++|..+..          .-++     .-+        +.|..+...++.
T Consensus       160 ~~h~~~~g~dp~~~~~~~~---~~-i~~vHvkD~~~~~----------~~~~-----~~~--------g~G~~d~~~~~~  212 (250)
T d1yx1a1         160 IGNWRWQEQAADEAALRLG---RY-VGYVHCKAVIRNR----------DGKL-----VAV--------PPSAADLQYWQR  212 (250)
T ss_dssp             TTGGGGGTCCHHHHHHHHG---GG-EEEEEECEEEECT----------TSCE-----EEE--------CCCHHHHHHHHH
T ss_pred             hHHHHHcCCcHHHHHHHhc---CC-EEEEEeccccCCC----------CCce-----ecC--------CCCCCCHHHHHH
Confidence            6543221 12233344433   32 3778888854321          0011     112        246788889999


Q ss_pred             HHHhCCCCCc
Q 015894          349 MLNGLGVRTN  358 (398)
Q Consensus       349 ~L~~~Gi~t~  358 (398)
                      .|+..|++..
T Consensus       213 ~L~~~~~d~~  222 (250)
T d1yx1a1         213 LLQHFPEGVA  222 (250)
T ss_dssp             HHTTSCTTCE
T ss_pred             HHHhCCCCce
Confidence            9998776533

>d1xp3a1 c.1.15.1 (A:2-298) Endonuclease IV {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: Endonuclease IV
domain: Endonuclease IV
species: Bacillus anthracis [TaxId: 1392]

Probab=93.41  E-value=0.97  Score=40.85  Aligned_cols=147  Identities=14%  Similarity=0.169  Sum_probs=83.3

Q ss_pred             hHHHHHHcCC-CEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHH
Q 015894          177 GFEAAVAAGA-KEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSK  255 (398)
Q Consensus       177 ~ie~a~~~Gv-~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~  255 (398)
                      +++.|.+.|+ +.|-+..+       ...+.+++++++++.+.++.+.+....+...+...-+....-..+++.+.++.+
T Consensus        94 ~l~~a~~lG~a~~vV~HpG-------~~~~~~~e~~l~~~~~~l~~i~~~~~~~~i~lE~~a~~~~~~g~~~eel~~ii~  166 (297)
T d1xp3a1          94 EIERTSALGVAKQIVLHPG-------AHVGAGADAGIQQIIKGLNEVLTPDQTVNIALETMAGKGTECGRSFEEIAKIID  166 (297)
T ss_dssp             HHHHHHHSSSCCEEEECCE-------ECTTSCHHHHHHHHHHHHHHHCCTTCSSEEEEECCCCCTTEECCSHHHHHHHHH
T ss_pred             HHHHHHHhccCcEEeeCCc-------ccccCCHHHHHHHHHHHHHHHhhhcccceEEEEeccccccccCCCHHHHHHHHH
Confidence            3566778885 55444322       123557889999988888877554444443344322212122356777777766


Q ss_pred             HHHhCCCCEEEEc-cC-----cCcCCHHHHHHHHHHHHhhCCCCe-EEEEeCCccchHHHHHHHHHHhCCCEEeeccccC
Q 015894          256 QLYDMGCSEISLG-DT-----IGVGTPGTVIPMLEAVLDAVPVDK-LAVHFHDTYGQALSNILASLQMGISTVDSSVSGL  328 (398)
Q Consensus       256 ~l~~~Gad~I~L~-DT-----~G~~~P~~v~~lv~~l~~~~p~~~-l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~Gl  328 (398)
                      .+..  .+.+.+| ||     .|.-......+++..+.+...... ..+|+||..+--        -.+.|. +.   -+
T Consensus       167 ~~~~--~~~vgvClDt~H~~aaG~~~~~~~~~~l~~f~~~~G~~~i~~iHlnDs~~~~--------gs~~Dr-H~---~i  232 (297)
T d1xp3a1         167 GVKY--NEKLSVCFDTCHTHDAGYDIVNNFDGVLNEFDKIVGIDRLQVLHINDSKNVR--------GAGKDR-HE---NI  232 (297)
T ss_dssp             HCTT--GGGEEEEEEHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECEESSCT--------TCCCCC-EE---CT
T ss_pred             Hhcc--ccceeeeccHHHHHHhccChhhHHHHHHHHHHHhhchhheeEEEEecccCcC--------CCCccc-cC---CC
Confidence            5421  2334444 54     344445667788888877665223 478999875421        012232 22   23


Q ss_pred             CCCCCCCCCCCCccHHHHHHHHHh
Q 015894          329 GGCPYAKGASGNVATEDVVYMLNG  352 (398)
Q Consensus       329 Gecp~a~graGNa~lE~vv~~L~~  352 (398)
                      |        .|+...+.+...|+.
T Consensus       233 G--------~G~I~~~~l~~ll~~  248 (297)
T d1xp3a1         233 G--------FGHIGYKALHHIVHH  248 (297)
T ss_dssp             T--------SSSSCHHHHHHHHTC
T ss_pred             C--------CCCcCHHHHHHHHhc
Confidence            2        577888888888875

>d1vcva1 c.1.10.1 (A:1-226) Deoxyribose-phosphate aldolase DeoC {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=93.38  E-value=2.3  Score=37.15  Aligned_cols=153  Identities=15%  Similarity=0.140  Sum_probs=97.7

Q ss_pred             CCCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEEEe--C----C----HhhHHHHH
Q 015894          114 NIVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPVLT--P----N----LKGFEAAV  182 (398)
Q Consensus       114 ~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~--~----n----~~~ie~a~  182 (398)
                      ...+.++..++++.-.+.|+..+-+-    |.|+|          ..+ .+.++++.+.+  |    .    ....+ ++
T Consensus        12 p~~t~~~i~~~~~~A~~~~~aavcV~----P~~v~----------~a~~~l~~~~v~tVigFP~G~~~~~~k~~e~~-a~   76 (226)
T d1vcva1          12 PYLTVDEAVAGARKAEELGVAAYCVN----PIYAP----------VVRPLLRKVKLCVVADFPFGALPTASRIALVS-RL   76 (226)
T ss_dssp             TTCCHHHHHHHHHHHHHHTCSEEEEC----GGGHH----------HHGGGCSSSEEEEEESTTTCCSCHHHHHHHHH-HH
T ss_pred             CCCCHHHHHHHHHHHHHhCCeEEEEC----HHHHH----------HHHHhccCCceEEEEecCcccCcHHHHHHHHH-HH
Confidence            36788999999999999999888773    43332          223 34577776655  3    1    12344 45


Q ss_pred             HcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCC
Q 015894          183 AAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGC  262 (398)
Q Consensus       183 ~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Ga  262 (398)
                      ..|+++|.+.+..+-.     ....+++..+.+..+++.+.  |..+-+-+.       .+..+.+.....++.+.++|+
T Consensus        77 ~~GAdEID~Vin~~~~-----~~g~~~~v~~ei~~v~~~~~--~~~lKVIlE-------t~~L~~~ei~~~~~~~~~aGa  142 (226)
T d1vcva1          77 AEVADEIDVVAPIGLV-----KSRRWAEVRRDLISVVGAAG--GRVVKVITE-------EPYLRDEERYTLYDIIAEAGA  142 (226)
T ss_dssp             TTTCSEEEEECCHHHH-----HTTCHHHHHHHHHHHHHHTT--TSEEEEECC-------GGGCCHHHHHHHHHHHHHHTC
T ss_pred             HcCCCeeEEEecHHHH-----hCCCHHHHHHHHHHHHhccC--CCeEEEEec-------ccccCHHHHHHHHHHHHHcCc
Confidence            6699999999876543     22356666676766666552  554443222       234577888889999999999


Q ss_pred             CEEEEccCcCc--------------CCHHHHHHHHHHHHhhCCCCeEEEEe
Q 015894          263 SEISLGDTIGV--------------GTPGTVIPMLEAVLDAVPVDKLAVHF  299 (398)
Q Consensus       263 d~I~L~DT~G~--------------~~P~~v~~lv~~l~~~~p~~~l~~H~  299 (398)
                      |-|  +=+.|.              .+|.+++.+.+.++. .+. .+++..
T Consensus       143 dFI--KTSTGf~~~g~~~~~~~~~~at~~~~~~~~~~~~~-~g~-~vgiKa  189 (226)
T d1vcva1         143 HFI--KSSTGFAEEAYAARQGNPVHSTPERAAAIARYIKE-KGY-RLGVKM  189 (226)
T ss_dssp             SEE--ECCCSCCCHHHHHHTTCCSSCCHHHHHHHHHHHHH-HTC-CCEEEE
T ss_pred             cee--eecccccCCcccccccCcccCcHHHHHHHHHHHHH-hCC-ceeEEC
Confidence            975  446674              567777766555554 332 355554

>d1dosa_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class II FBP aldolase
domain: Fructose-bisphosphate aldolase (FBP aldolase)
species: Escherichia coli [TaxId: 562]

Probab=93.33  E-value=0.46  Score=44.73  Aligned_cols=208  Identities=17%  Similarity=0.162  Sum_probs=126.7

Q ss_pred             cccCCCCC--CCCCHHHHHHHHHHHHhcCCCEEEEecCC-----CCCccc-CCCCHHHHH------HHHH---hccCCcE
Q 015894          106 RDGLQNEK--NIVPAVVKVELIKLLVSSGLAVVEATSFV-----SPKWVP-QLADAKDVM------AAIQ---NVEGARF  168 (398)
Q Consensus       106 RDG~Q~~~--~~~~~~~k~~ia~~L~~aGv~~IEvG~~~-----~~~~~p-~~~D~~~v~------~~i~---~~~~~~l  168 (398)
                      |.+.+..+  +....++...++++-.+..-+.|--.+..     ..+.+. .+.....++      ..++   +-.++.+
T Consensus        25 ~~~~yAV~AfNv~n~e~~~Aii~AAee~~sPvIlq~s~g~~~y~gg~~~~~~~~~~~~~~~~~~~a~~v~~~a~~~~VPV  104 (358)
T d1dosa_          25 KENNFALPAVNCVGTDSINAVLETAAKVKAPVIVQFSNGGASFIAGKGVKSDVPQGAAILGAISGAHHVHQMAEHYGVPV  104 (358)
T ss_dssp             HHTTCCEEEEECCSHHHHHHHHHHHHHHTCCEEEEECHHHHHHHHCTTSCCCSTTHHHHHHHHHHHHHHHHHHHHHTCEE
T ss_pred             HHCCceEEEEEeCCHHHHHHHHHHHHHhCCCEEEEecccHHHHcCccchhhhHHhHHHHHHHHHHHHHHHHHHHhCCCCE
Confidence            34445444  35788888999999999999987654321     011110 011111111      1222   1234544


Q ss_pred             EEEeC-C----HhhHHHHHHcC-----------CCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEE
Q 015894          169 PVLTP-N----LKGFEAAVAAG-----------AKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGY  232 (398)
Q Consensus       169 ~~l~~-n----~~~ie~a~~~G-----------v~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~  232 (398)
                      ..... .    ...++.++++|           ...|.+=.|          ..+.+++++.-++++++|++.|+.|++.
T Consensus       105 ~lHLDHg~~~~~~~i~~~idag~~~~~~~~~~gfsSVMiDgS----------~l~~eeNi~~Tk~vve~Ah~~gv~VEaE  174 (358)
T d1dosa_         105 ILHTDHCAKKLLPWIDGLLDAGEKHFAATGKPLFSSHMIDLS----------EESLQENIEICSKYLERMSKIGMTLEIE  174 (358)
T ss_dssp             EEEECCCCGGGHHHHHHHHHHHHHHHHHHSSCSCSEEEECCT----------TSCHHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred             EEecCccchhhHHHHHHHHHHHHHHHHHhCCCCCccccCCCC----------cCCHHHHHHHHHHHHHHHhhhCCeEEEe
Confidence            44432 1    23345555554           777766322          2367899999999999999999999988


Q ss_pred             EeeeecCCCC----------CCCCHHHHHHHHHHHHh-CCCCEEEE--ccCcCc-------CCHHHHHHHHHHHHhhC--
Q 015894          233 LSCVVGCPVE----------GMVPPSKVAYVSKQLYD-MGCSEISL--GDTIGV-------GTPGTVIPMLEAVLDAV--  290 (398)
Q Consensus       233 l~~~fg~~~~----------~r~~~~~l~~~a~~l~~-~Gad~I~L--~DT~G~-------~~P~~v~~lv~~l~~~~--  290 (398)
                      |-..-|.++.          -.++|+.....++++.+ -|+|.+.+  .-.=|.       +.|.-..++.+.+++..  
T Consensus       175 lG~igg~Edg~~~~~~~~~~~~T~peea~~~~~ef~~~tgvD~LAvaiGt~HG~Yk~~~~~l~p~l~~~~~~~i~~~~~v  254 (358)
T d1dosa_         175 LGCTGGEEDGVDNSHMDASALYTQPEDVDYAYTELSKISPRFTIAASFGNVHGVYKAGNVVLTPTILRDSQEYVSKKHNL  254 (358)
T ss_dssp             CCCCCCCCCCCSCCCCCCCCCSCCHHHHHHHHHHHHTTCSCEEEECCSSCCCSSCCCSCCCCCTHHHHHHHHHHHHHHTC
T ss_pred             eeeeecccCCccccccchhhccCCHHHHHHHHHHHhccCccceeeeeccchhhhcCCCCccCCchhhHHHHHHHHHHhCC
Confidence            8776554431          14788887766655544 58886433  233332       35677788888887763  


Q ss_pred             CCCeEEEEeCCccchHHHHHHHHHHhCCCEEee
Q 015894          291 PVDKLAVHFHDTYGQALSNILASLQMGISTVDS  323 (398)
Q Consensus       291 p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~  323 (398)
                      |..++.+=.|--.|...-....|++.|+.-|+.
T Consensus       255 p~~~~~LVlHGgSGip~e~i~~ai~~GV~KiNi  287 (358)
T d1dosa_         255 PHNSLNFVFHGGSGSTAQEIKDSVSYGVVKMNI  287 (358)
T ss_dssp             CTTCSCEEECSCTTCCHHHHHHHHHTTEEEEEE
T ss_pred             CCcccceeccCCCCCcHHHHHHHHHcCCeEEee
Confidence            532333334557788889999999999876643

>d1to3a_ c.1.10.1 (A:) Putative aldolase YihT {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Putative aldolase YihT
species: Salmonella typhimurium [TaxId: 90371]

Probab=93.32  E-value=1.6  Score=39.26  Aligned_cols=177  Identities=12%  Similarity=0.086  Sum_probs=100.0

Q ss_pred             hHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCC-CHHHHHHHHH
Q 015894          177 GFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMV-PPSKVAYVSK  255 (398)
Q Consensus       177 ~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~-~~~~l~~~a~  255 (398)
                      +++.+.+.|++-|-+.+...+       .-+.+..++.++++.+.|++.|+.+...+. ..+.+..... .++.+...++
T Consensus       111 sv~~a~~~GadaVk~lv~~~~-------d~~~e~~~~~~~~l~~~c~~~glp~llE~l-~~~~~~~~~~~~~~~i~~a~r  182 (291)
T d1to3a_         111 NAQAVKRDGAKALKLLVLWRS-------DEDAQQRLNMVKEFNELCHSNGLLSIIEPV-VRPPRCGDKFDREQAIIDAAK  182 (291)
T ss_dssp             CHHHHHHTTCCEEEEEEEECT-------TSCHHHHHHHHHHHHHHHHTTTCEEEEEEE-ECCCSSCSCCCHHHHHHHHHH
T ss_pred             CHHHHHhccCceEEEEEeeCC-------cccHHHHHHHHHHHHHHHHHcCCcceEEEE-ecCCCcccccchHHHHHHHHH
Confidence            578899999997766443211       112345667788999999999998764332 1222222233 3667888999


Q ss_pred             HHHhCCCCEEEEccCc-CcCCHHHHHHHHHHHHhhCCCCeEEE-EeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCC
Q 015894          256 QLYDMGCSEISLGDTI-GVGTPGTVIPMLEAVLDAVPVDKLAV-HFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPY  333 (398)
Q Consensus       256 ~l~~~Gad~I~L~DT~-G~~~P~~v~~lv~~l~~~~p~~~l~~-H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~  333 (398)
                      ++.++|+|.+-+.=+. +..........+..+....+. |+-+ =.--+.---....-.|+++||..|-+.=+=...   
T Consensus       183 ~~~e~GaDi~K~~~p~~~~~~~~~~~~~~~~~~~~~~~-p~vvLs~G~~~~~f~~~l~~A~~aGa~G~~~GR~iw~~---  258 (291)
T d1to3a_         183 ELGDSGADLYKVEMPLYGKGARSDLLTASQRLNGHINM-PWVILSSGVDEKLFPRAVRVAMEAGASGFLAGRAVWSS---  258 (291)
T ss_dssp             HHTTSSCSEEEECCGGGGCSCHHHHHHHHHHHHHTCCS-CEEECCTTSCTTTHHHHHHHHHHTTCCEEEESHHHHGG---
T ss_pred             HHHhcCCcEEEEecCCCchhhhHHHHHHHHHHhhcCCC-cEEEEeCCCCHHHHHHHHHHHHHCCCeEEEeChhhhhC---
Confidence            9999999988776432 223344444445555554432 3222 111222222333445788998755431000011   


Q ss_pred             CCCCCCCccHHHHHHHHHhCCCCCccChHHHHHHHHHHHHHhCC
Q 015894          334 AKGASGNVATEDVVYMLNGLGVRTNVDIRKLMIAGDFICKHLGR  377 (398)
Q Consensus       334 a~graGNa~lE~vv~~L~~~Gi~t~iDl~~L~~~~~~v~~~~g~  377 (398)
                         ..|.+..+.+   +++.+      .+.|.++++.+.+.+++
T Consensus       259 ---~~~~~~~~~~---l~~~~------~~~l~~l~~i~~~~~~~  290 (291)
T d1to3a_         259 ---VIGLPDTELM---LRDVS------APKLQRLGEIVDEMMGK  290 (291)
T ss_dssp             ---GTTCSCHHHH---HHHTH------HHHHHHHHHHHHHHHHT
T ss_pred             ---cccCccHHHH---HHHHH------HHHHHHHHHHHHHHhcc
Confidence               1234455544   45443      34678888888877654

>d2flia1 c.1.2.2 (A:3-219) D-ribulose-5-phosphate 3-epimerase {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Streptococcus pyogenes [TaxId: 1314]

Probab=93.26  E-value=0.025  Score=50.05  Aligned_cols=162  Identities=14%  Similarity=0.141  Sum_probs=95.4

Q ss_pred             HHHHHHHHhcCCCEEEE----ecCCCCCcccCCCCHHHHHHHHHhccCCcEEE--EeCC-HhhHHHHHHcCCCEEEEecc
Q 015894          122 VELIKLLVSSGLAVVEA----TSFVSPKWVPQLADAKDVMAAIQNVEGARFPV--LTPN-LKGFEAAVAAGAKEVAIFAS  194 (398)
Q Consensus       122 ~~ia~~L~~aGv~~IEv----G~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~n-~~~ie~a~~~Gv~~v~i~~~  194 (398)
                      .+-++.+.+.|++.|-+    |.|+.     .+.-..+.++.+++.++..+-+  ++.+ .+-++...++|++.|.+..-
T Consensus        17 ~~~i~~~~~~g~d~iHiDimDg~Fvp-----n~s~g~~~i~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~ga~~i~~H~E   91 (217)
T d2flia1          17 ASELARIEETDAEYVHIDIMDGQFVP-----NISFGADVVASMRKHSKLVFDCHLMVVDPERYVEAFAQAGADIMTIHTE   91 (217)
T ss_dssp             HHHHHHHHHTTCCEEEEEEEBSSSSS-----CBCBCHHHHHHHHTTCCSEEEEEEESSSGGGGHHHHHHHTCSEEEEEGG
T ss_pred             HHHHHHHHHcCCCEEEEEcccCcCCC-----ccccCHHHHHHHHhcCCCceEeEEEecCHHHHHHHHHHcCCcEEEeccc
Confidence            35677889999998777    44542     2221224556667666665544  4545 45688999999998888643


Q ss_pred             CchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEE-EEccCc--
Q 015894          195 ASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEI-SLGDTI--  271 (398)
Q Consensus       195 ~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I-~L~DT~--  271 (398)
                      ..                +...+.++++++.|..+...+.     |.   ++++.+.++..     -+|.| .++=..  
T Consensus        92 ~~----------------~~~~~~i~~i~~~g~~~Gial~-----p~---T~~~~~~~~l~-----~id~vliM~V~pG~  142 (217)
T d2flia1          92 ST----------------RHIHGALQKIKAAGMKAGVVIN-----PG---TPATALEPLLD-----LVDQVLIMTVNPGF  142 (217)
T ss_dssp             GC----------------SCHHHHHHHHHHTTSEEEEEEC-----TT---SCGGGGGGGTT-----TCSEEEEESSCTTC
T ss_pred             cc----------------cCHHHHHHHHHhcCCeEEEEec-----CC---cchhHHHhHHh-----hcCEEEEEEEcCcc
Confidence            22                2234567888999998875444     33   34555444432     24432 222223  


Q ss_pred             -CcCCHHHHHHHHHHHH----hhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894          272 -GVGTPGTVIPMLEAVL----DAVPVDKLAVHFHDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       272 -G~~~P~~v~~lv~~l~----~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                       |...-..+.+.++.++    ++.++..|.+=+    |.-.-|+-...++||+.+
T Consensus       143 ~Gq~f~~~~~~ki~~l~~~~~~~~~~~~I~vDG----GIn~~~i~~l~~aGad~~  193 (217)
T d2flia1         143 GGQAFIPECLEKVATVAKWRDEKGLSFDIEVDG----GVDNKTIRACYEAGANVF  193 (217)
T ss_dssp             SSCCCCGGGHHHHHHHHHHHHHTTCCCEEEEES----SCCTTTHHHHHHHTCCEE
T ss_pred             cccccchhhHHHHHHHHHHHHhcCCCeEEEEeC----CCCHHHHHHHHHCCCCEE
Confidence             3333333444444444    444555666644    444557788889999977

>d1i60a_ c.1.15.4 (A:) Hypothetical protein IolI {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: IolI-like
domain: Hypothetical protein IolI
species: Bacillus subtilis [TaxId: 1423]

Probab=93.22  E-value=0.11  Score=46.01  Aligned_cols=197  Identities=15%  Similarity=0.166  Sum_probs=99.1

Q ss_pred             HHHHHHHhcCCCEEEEecCCC-CCcccCCCCHHHHHHHHHhccCCcEEEEeC-------CH-----------hhHHHHHH
Q 015894          123 ELIKLLVSSGLAVVEATSFVS-PKWVPQLADAKDVMAAIQNVEGARFPVLTP-------NL-----------KGFEAAVA  183 (398)
Q Consensus       123 ~ia~~L~~aGv~~IEvG~~~~-~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~-------n~-----------~~ie~a~~  183 (398)
                      +.++...++|++.||+..... +... .-.+.+++...+.. .+.++.++..       +.           +-++.|..
T Consensus        18 ~~l~~a~~~Gf~~IEl~~~~~~~~~~-~~~~~~~l~~~l~~-~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~   95 (278)
T d1i60a_          18 LDLELCEKHGYDYIEIRTMDKLPEYL-KDHSLDDLAEYFQT-HHIKPLALNALVFFNNRDEKGHNEIITEFKGMMETCKT   95 (278)
T ss_dssp             HHHHHHHHTTCSEEEEETTTHHHHHT-TSSCHHHHHHHHHT-SSCEEEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCEEEeCCcccccccc-CcccHHHHHHHHHH-cCCcEEEEecCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            345677799999999964321 1100 11234555544442 2455444431       11           12456677


Q ss_pred             cCCCEEEEeccCchHHHhhhcCCC----HHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHh
Q 015894          184 AGAKEVAIFASASESFSKSNINCT----IEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYD  259 (398)
Q Consensus       184 ~Gv~~v~i~~~~Sd~~~~~~~~~s----~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~  259 (398)
                      .|++.+.+.....+      .+.+    .+..++.++++.++|++.|+.+.  +.. .+-+...-.+++...++++   +
T Consensus        96 lG~~~i~~~~~~~~------~~~~~~~~~~~~~~~l~~l~~~a~~~Gv~l~--lE~-~~~~~~~~~~~~~~~~ll~---~  163 (278)
T d1i60a_          96 LGVKYVVAVPLVTE------QKIVKEEIKKSSVDVLTELSDIAEPYGVKIA--LEF-VGHPQCTVNTFEQAYEIVN---T  163 (278)
T ss_dssp             HTCCEEEEECCBCS------SCCCHHHHHHHHHHHHHHHHHHHGGGTCEEE--EEC-CCCTTBSSCSHHHHHHHHH---H
T ss_pred             cCCCccccccccCC------CCCCHHHHHHHHHHHHHHHHHHHHHhCCeee--eee-ccccccccCCHHHHHHHHH---H
Confidence            89998887643221      1223    34456677788888999998764  221 0111122235555555544   4


Q ss_pred             CCCCEEEE-ccCcCcCC--HHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCC
Q 015894          260 MGCSEISL-GDTIGVGT--PGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKG  336 (398)
Q Consensus       260 ~Gad~I~L-~DT~G~~~--P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~g  336 (398)
                      .+-+.+.+ -||. .+.  .....+    +.+....-..++|++|..+...         |- ..+..      + ..||
T Consensus       164 v~~~~vg~~~D~~-h~~~~~~~~~~----~~~~~~~~i~~vHl~D~~~~~~---------~~-~~~~~------~-~~pG  221 (278)
T d1i60a_         164 VNRDNVGLVLDSF-HFHAMGSNIES----LKQADGKKIFIYHIDDTEDFPI---------GF-LTDED------R-VWPG  221 (278)
T ss_dssp             HCCTTEEEEEEHH-HHHHTTCCHHH----HHTSCGGGEEEEEECEECCCCT---------TT-CCGGG------E-ESTT
T ss_pred             hhcccccccccch-hhhcCCCCHHH----HHHhccccceEEEEeecccccc---------cc-ccccc------c-cCCC
Confidence            44443322 2432 111  111222    2222322236788887644321         00 00000      0 1122


Q ss_pred             CCCCccHHHHHHHHHhCCCC
Q 015894          337 ASGNVATEDVVYMLNGLGVR  356 (398)
Q Consensus       337 raGNa~lE~vv~~L~~~Gi~  356 (398)
                       .|+.+..+++..|++.|++
T Consensus       222 -~G~id~~~~~~~l~~~gy~  240 (278)
T d1i60a_         222 -QGAIDLDAHLSALKEIGFS  240 (278)
T ss_dssp             -SSSSCHHHHHHHHHHTTCC
T ss_pred             -CcccCHHHHHHHHHHHCCC
Confidence             5889999999999998775

>d1vlia2 c.1.10.6 (A:2-296) Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: NeuB-like
domain: Spore coat polysaccharide biosynthesis protein SpsE, N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=93.08  E-value=2.2  Score=38.47  Aligned_cols=181  Identities=11%  Similarity=0.056  Sum_probs=112.3

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEecCCC-----CCcc----------------c--CC--CCHHHHHHHHHhccCCcEEEE
Q 015894          117 PAVVKVELIKLLVSSGLAVVEATSFVS-----PKWV----------------P--QL--ADAKDVMAAIQNVEGARFPVL  171 (398)
Q Consensus       117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~-----~~~~----------------p--~~--~D~~~v~~~i~~~~~~~l~~l  171 (398)
                      +.+.-.++++...++|.+.|-.-.+..     ++..                .  .+  .+..++...++. .+..+.+-
T Consensus        29 ~~~~ak~lI~~A~~sGAdaVKFQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kk~els~~~~~~l~~~~k~-~gi~~~~s  107 (295)
T d1vlia2          29 KLDQAFALIDAAAEAGADAVKFQMFQADRMYQKDPGLYKTAAGKDVSIFSLVQSMEMPAEWILPLLDYCRE-KQVIFLST  107 (295)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEECCBCGGGGTSCCC---------CCCHHHHGGGBSSCGGGHHHHHHHHHH-TTCEEECB
T ss_pred             cHHHHHHHHHHHHHcCCCEEEEeeecchhceecccccccccCcccccccccchheecCHHHhhhHHHHhhh-cccceeee
Confidence            567778899999999999988764321     1100                0  00  111122222221 24444433


Q ss_pred             eCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHH
Q 015894          172 TPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVA  251 (398)
Q Consensus       172 ~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~  251 (398)
                      +...+.++.+.+.|++.+-|.-+  +..              . .++++++.+.+.++-  ++       .+..+.+.+.
T Consensus       108 ~fd~~s~~~l~~l~~~~iKIaS~--d~~--------------n-~~Li~~i~k~~kpvi--is-------tG~~~~~ei~  161 (295)
T d1vlia2         108 VCDEGSADLLQSTSPSAFKIASY--EIN--------------H-LPLLKYVARLNRPMI--FS-------TAGAEISDVH  161 (295)
T ss_dssp             CCSHHHHHHHHTTCCSCEEECGG--GTT--------------C-HHHHHHHHTTCSCEE--EE-------CTTCCHHHHH
T ss_pred             cccceeeeeecccCcceeEeccc--ccc--------------c-HHHHHHHHhcCCchh--ee-------chhhhhhhHH
Confidence            44678888989999998887532  221              1 245677788888875  33       2345788888


Q ss_pred             HHHHHHHhCCC-CEEEEccCcCcCCHHHH--HHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE--eeccc
Q 015894          252 YVSKQLYDMGC-SEISLGDTIGVGTPGTV--IPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV--DSSVS  326 (398)
Q Consensus       252 ~~a~~l~~~Ga-d~I~L~DT~G~~~P~~v--~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V--D~Sv~  326 (398)
                      +.++.+...+. +.+-+-=+..+=+|..=  -..+..+++.++..++++--|-..|..  .+++|+.+||++|  +.|+.
T Consensus       162 ~~~~~~~~~~~~~i~llhc~s~YPt~~~~~nL~~i~~l~k~~~~~~vG~SdHs~~~~~--~~~~A~~~Ga~~IEkH~tl~  239 (295)
T d1vlia2         162 EAWRTIRAEGNNQIAIMHCVAKYPAPPEYSNLSVIPMLAAAFPEAVIGFSDHSEHPTE--APCAAVRLGAKLIEKHFTID  239 (295)
T ss_dssp             HHHHHHHTTTCCCEEEEEECSSSSCCGGGCCTTHHHHHHHHSTTSEEEEEECCSSSSH--HHHHHHHTTCSEEEEEBCSC
T ss_pred             HHHhHhhhcccccEEEEeecccccccchhhhhhhhhhhhhhccccceeeecccccccc--chhhhhccCcceeeEEEEec
Confidence            88888877775 45555455555554321  224667788888888999777655544  3567888999987  66665

>d1z41a1 c.1.4.1 (A:2-338) NADPH dehydrogenase NamA {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: NADPH dehydrogenase NamA
species: Bacillus subtilis [TaxId: 1423]

Probab=92.87  E-value=1.4  Score=40.66  Aligned_cols=137  Identities=15%  Similarity=0.045  Sum_probs=88.6

Q ss_pred             HHHHHcCCCEEEEecc--------CchH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-CCcEEEEEeeeecCCCCCCCCH
Q 015894          179 EAAVAAGAKEVAIFAS--------ASES--FSKSNINCTIEDSLIRYRDVALAAREL-SIPVRGYLSCVVGCPVEGMVPP  247 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~--------~Sd~--~~~~~~~~s~~~~l~~~~~~v~~ak~~-G~~v~~~l~~~fg~~~~~r~~~  247 (398)
                      ++|.++|.|.|.|...        +|+.  +++..+|-+.+.-+..+.++++.+|+. +..+.+-++..-  ...+-.+.
T Consensus       150 ~ra~~AGfDGVEiH~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eiv~air~~~~~~~~vr~~~~~--~~~~g~~~  227 (337)
T d1z41a1         150 ARAKEAGFDVIEIHAAHGYLIHEFLSPLSNHRTDEYGGSPENRYRFLREIIDEVKQVWDGPLFVRVSASD--YTDKGLDI  227 (337)
T ss_dssp             HHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHCCSCEEEEEECCC--CSTTSCCH
T ss_pred             HHHHHcCCCeEEeeccCcceeeeecCCccccccccccchhhhhhhHHHHHHHHHhhhhcccceEEecccc--cccCccch
Confidence            4667899999988654        1222  233345667888888888888888875 455554455321  12334688


Q ss_pred             HHHHHHHHHHHhCCCCEEEEccCc-----CcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhC-CCEE
Q 015894          248 SKVAYVSKQLYDMGCSEISLGDTI-----GVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMG-ISTV  321 (398)
Q Consensus       248 ~~l~~~a~~l~~~Gad~I~L~DT~-----G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aG-a~~V  321 (398)
                      ++..++++.+.++|+|.+.+.--.     -...|.....+.+.+|+.+. +|+..-+.-+   ....+..+++.| ||.|
T Consensus       228 ~~~~~~~~~l~~~g~d~~~~s~g~~~~~~~~~~~~~~~~~~~~ik~~~~-~pvi~~G~i~---~~~~ae~~l~~g~~D~V  303 (337)
T d1z41a1         228 ADHIGFAKWMKEQGVDLIDCSSGALVHADINVFPGYQVSFAEKIREQAD-MATGAVGMIT---DGSMAEEILQNGRADLI  303 (337)
T ss_dssp             HHHHHHHHHHHHTTCCEEEEECCCSSCCCCCCCTTTTHHHHHHHHHHHC-CEEEECSSCC---SHHHHHHHHHTTSCSEE
T ss_pred             hhhHHHHHHHHHcCCcccccccccccccccccCCcccHHHHHHHHHhcC-ceEEEeCCcC---CHHHHHHHHHCCCccee
Confidence            999999999999999987764221     12345556677788888765 4565543321   234456778888 7754

>d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Fructose-1,6-bisphosphate aldolase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=92.77  E-value=1.3  Score=39.49  Aligned_cols=202  Identities=15%  Similarity=0.177  Sum_probs=109.1

Q ss_pred             cEEEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCC--EEEEecCCCCCcccCCCCHHHHHHHHHhc---cCCcEEEEe
Q 015894           98 VKIVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLA--VVEATSFVSPKWVPQLADAKDVMAAIQNV---EGARFPVLT  172 (398)
Q Consensus        98 I~i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~--~IEvG~~~~~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~  172 (398)
                      +.++|-||=      .-..+.++..++.+.-.+.|+.  .|-+    +|.|+|      ...+.++..   .++++.+.+
T Consensus        12 ~~liDhTlL------~p~~T~~~I~~lc~eA~~~~~~~aaVCV----~P~~V~------~a~~~L~~~~~~~~v~v~tVi   75 (256)
T d2a4aa1          12 ICLTDHTFL------DENGTEDDIRELCNESVKTCPFAAAVCV----YPKFVK------FINEKIKQEINPFKPKIACVI   75 (256)
T ss_dssp             HTTEEEECC------CTTCCHHHHHHHHHHHHSSSSCCSEEEE----CGGGHH------HHHHHHHHHSSSCCSEEEEEE
T ss_pred             HHhccccCC------CCCCCHHHHHHHHHHHHHhCCCeEEEEe----CHHHHH------HHHHHhhhhccCCCceEEeec
Confidence            345677762      3356788888888888887754  3443    565553      334455532   256666554


Q ss_pred             --CC--------HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhC--CCcEEEEEeeeecCC
Q 015894          173 --PN--------LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAREL--SIPVRGYLSCVVGCP  240 (398)
Q Consensus       173 --~n--------~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~--G~~v~~~l~~~fg~~  240 (398)
                        |.        ....+.|++.|+++|.+.+..+....      ...+.+......+..+++.  +..+-+-+.  .   
T Consensus        76 gFP~G~~~~~~K~~Ea~~Ai~~GAdEID~Vin~~~l~~------g~~~~v~e~~~~i~~~~~~~~~~~lKVIlE--t---  144 (256)
T d2a4aa1          76 NFPYGTDSMEKVLNDTEKALDDGADEIDLVINYKKIIE------NTDEGLKEATKLTQSVKKLLTNKILKVIIE--V---  144 (256)
T ss_dssp             STTTCCSCHHHHHHHHHHHHHHTCSEEEEECCHHHHHH------SHHHHHHHHHHHHHHHHTTCTTSEEEEECC--H---
T ss_pred             CCCcccchHHHHHHHHHHHHHcCCCeEEEeccHHHHhc------CcHHHHHHHHHHHHHHHhhccCCeeEeeeh--h---
Confidence              31        23577889999999999987654321      1223334334445555543  344332222  1   


Q ss_pred             CCCCCCHHHHHHHH-HHHHhCCCCEEEEccCcC----cCCHHHHHHHHHHHHhhCC-----CCeEEEEeC---CccchHH
Q 015894          241 VEGMVPPSKVAYVS-KQLYDMGCSEISLGDTIG----VGTPGTVIPMLEAVLDAVP-----VDKLAVHFH---DTYGQAL  307 (398)
Q Consensus       241 ~~~r~~~~~l~~~a-~~l~~~Gad~I~L~DT~G----~~~P~~v~~lv~~l~~~~p-----~~~l~~H~H---nd~GlA~  307 (398)
                        +..+.+.....+ ....+.|+|-|  +=+.|    ..+|..+..+.+.+++...     .-+++++.-   -|+..|.
T Consensus       145 --~~L~~~e~i~~~~~~~~~aGadFV--KTSTG~~~~gat~~~v~~m~~~v~e~~~~~~~~g~~~gVKASGGIrt~~~a~  220 (256)
T d2a4aa1         145 --GELKTEDLIIKTTLAVLNGNADFI--KTSTGKVQINATPSSVEYIIKAIKEYIKNNPEKNNKIGLKVSGGISDLNTAS  220 (256)
T ss_dssp             --HHHCSHHHHHHHHHHHHTTTCSEE--ECCCSCSSCCCCHHHHHHHHHHHHHHHHHCGGGTTCCEEEEESSCCSHHHHH
T ss_pred             --hhcCcHHHHHHHHHHHHhcccHHH--HhccCCCCCCCCHHHHHHHHHHHHHHHhhccccCCceeEEecCCCCCHHHHH
Confidence              112234444444 44568899954  45555    5789999999888875321     124566543   3344444


Q ss_pred             HHHHHHHH-hCCCEEeeccccCCC
Q 015894          308 SNILASLQ-MGISTVDSSVSGLGG  330 (398)
Q Consensus       308 ANalaAl~-aGa~~VD~Sv~GlGe  330 (398)
                      .-..++.+ .|..+++....=+|-
T Consensus       221 ~~i~~g~~~lG~~~~~~~~fRIGt  244 (256)
T d2a4aa1         221 HYILLARRFLSSLACHPDNFRIGS  244 (256)
T ss_dssp             HHHHHHHHHTC------CCEEEEE
T ss_pred             HHHHHHHHhcccccccCCceeeeH
Confidence            43333333 455566666555555

>d1ub3a_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermus thermophilus [TaxId: 274]

Probab=92.60  E-value=0.85  Score=39.64  Aligned_cols=108  Identities=22%  Similarity=0.259  Sum_probs=74.9

Q ss_pred             EeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcC---CHHHHHHHHHHHHhhCCCC----eEEEEeCCccch
Q 015894          233 LSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVG---TPGTVIPMLEAVLDAVPVD----KLAVHFHDTYGQ  305 (398)
Q Consensus       233 l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~---~P~~v~~lv~~l~~~~p~~----~l~~H~Hnd~Gl  305 (398)
                      ++.+.|.|... .+.+.-..-++.+.+.||+.|-++=-.|.+   .-..+++-++.+++..++.    .|+.+..++-..
T Consensus        56 v~~VigFP~G~-~~~~~k~~e~~~ai~~GA~EiD~V~n~~~~~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~~ei  134 (211)
T d1ub3a_          56 LVTVVGFPLGY-QEKEVKALEAALACARGADEVDMVLHLGRAKAGDLDYLEAEVRAVREAVPQAVLKVILETGYFSPEEI  134 (211)
T ss_dssp             EEEEESTTTCC-SCHHHHHHHHHHHHHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHSTTSEEEEECCGGGSCHHHH
T ss_pred             eEEEEeccccc-CcHHHHHHHHHHHHHcCCCeEEEeeccchhhcCCHHHHHHHHHHHHHhccCCceEEEeccccCCHHHH
Confidence            34445667654 455554555778888999999877666654   4567777888888876642    356677766555


Q ss_pred             HHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q 015894          306 ALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLN  351 (398)
Q Consensus       306 A~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~  351 (398)
                      . ..+..|+++|++.|=+|- |.+        .+.+..|++..+.+
T Consensus       135 ~-~a~~~a~~aGadfiKTST-G~~--------~~gat~e~v~~m~~  170 (211)
T d1ub3a_         135 A-RLAEAAIRGGADFLKTST-GFG--------PRGASLEDVALLVR  170 (211)
T ss_dssp             H-HHHHHHHHHTCSEEECCC-SSS--------SCCCCHHHHHHHHH
T ss_pred             H-HHHHHHHHhccceEEecC-CCC--------CCCCCHHHHHHHHH
Confidence            5 556788999999999986 443        34577788777665

>d1m5wa_ c.1.24.1 (A:) Pyridoxine 5'-phosphate synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Pyridoxine 5'-phosphate synthase
family: Pyridoxine 5'-phosphate synthase
domain: Pyridoxine 5'-phosphate synthase
species: Escherichia coli [TaxId: 562]

Probab=92.56  E-value=0.16  Score=45.48  Aligned_cols=118  Identities=18%  Similarity=0.303  Sum_probs=77.5

Q ss_pred             HHHHHHHHhc--cCCcEEEEe-CCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEE
Q 015894          154 KDVMAAIQNV--EGARFPVLT-PNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVR  230 (398)
Q Consensus       154 ~~v~~~i~~~--~~~~l~~l~-~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~  230 (398)
                      +.+...++.+  .+++++.++ |+.++++.|.+.|+|.|-++..   .|.........++.++++.+++++|+++|+.|.
T Consensus       113 ~~L~~~i~~l~~~girvSLFiDpd~~~i~~a~~lGad~IElhTG---~Ya~a~~~~~~~~el~~i~~aa~~A~~lGL~Vn  189 (242)
T d1m5wa_         113 DKMRDACKRLADAGIQVSLFIDADEEQIKAAAEVGAPFIEIHTG---CYADAKTDAEQAQELARIAKAATFAASLGLKVN  189 (242)
T ss_dssp             HHHHHHHHHHHHTTCEEEEEECSCHHHHHHHHHTTCSEEEEECH---HHHHCCSHHHHHHHHHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHHHhcCCeEEEEeccchhhHHHHhhcCcceeeeecc---cccccccchhhHHHHHHHHHHHHHHHhcCCccc
Confidence            3444455433  367888777 7889999999999999999876   333322122344568999999999999999987


Q ss_pred             EEEeeeecCCCCCCCCHHHHHHHHHHHHhC-CCCEEEE-----ccCcCcCCHHHHHHHHHHHHh
Q 015894          231 GYLSCVVGCPVEGMVPPSKVAYVSKQLYDM-GCSEISL-----GDTIGVGTPGTVIPMLEAVLD  288 (398)
Q Consensus       231 ~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~-Gad~I~L-----~DT~G~~~P~~v~~lv~~l~~  288 (398)
                      +      |   + -.+.+-+..++    +. +.++++|     +|+.=.+....|.++.+.+++
T Consensus       190 A------G---H-gLn~~Nl~~i~----~ip~i~EvsIGHaiI~eal~~Gl~~aV~~~~~ii~~  239 (242)
T d1m5wa_         190 A------G---H-GLTYHNVKAIA----AIPEMHELNIGHAIIGRAVMTGLKDAVAEMKRLMLE  239 (242)
T ss_dssp             E------E---S-SCCTTTHHHHH----TCTTEEEEEECHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             C------C---C-CcCccchHHHh----cCCCCeEEeccHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            3      1   2 23334443332    23 3566654     566666677777777766654

>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=92.54  E-value=1  Score=40.26  Aligned_cols=45  Identities=13%  Similarity=0.069  Sum_probs=20.9

Q ss_pred             CHHHHHHHHHHHHhCCCCEEEE-ccCcCcCCHHHHHHHHHHHHhhC
Q 015894          246 PPSKVAYVSKQLYDMGCSEISL-GDTIGVGTPGTVIPMLEAVLDAV  290 (398)
Q Consensus       246 ~~~~l~~~a~~l~~~Gad~I~L-~DT~G~~~P~~v~~lv~~l~~~~  290 (398)
                      +.+...++++.+.++|+|.+.+ +=.....+..++.+.++.+.+..
T Consensus        87 s~~~~i~~a~~a~~~Gad~v~i~~P~~~~~~~~~l~~~~~~v~~~~  132 (296)
T d1xxxa1          87 DTAHSIRLAKACAAEGAHGLLVVTPYYSKPPQRGLQAHFTAVADAT  132 (296)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEECCCSSCCCHHHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHHHhcCCeEEEEeccCCCCCHHHHHHHHHHHHHhc
Confidence            3455555555555555554322 22222334455555555554443

>d2g0wa1 c.1.15.4 (A:10-284) Hypothetical protein Lmo2234 {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: IolI-like
domain: Hypothetical protein Lmo2234
species: Listeria monocytogenes [TaxId: 1639]

Probab=92.51  E-value=0.065  Score=47.44  Aligned_cols=197  Identities=14%  Similarity=0.134  Sum_probs=99.4

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC--C---------------Hhh
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP--N---------------LKG  177 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~--n---------------~~~  177 (398)
                      .++.++.+   +...++|++.||+......+..+.-.+.+++.+.++. .+.++.+++.  +               .+-
T Consensus        14 ~~~lee~l---~~aa~~Gfd~iEl~~~~~~~~~~~~~~~~~~~~~l~~-~gl~i~~~~~~~~~~~~~~~~~~~~~~~~~~   89 (275)
T d2g0wa1          14 EVSFPKRV---KVAAENGFDGIGLRAENYVDALAAGLTDEDMLRILDE-HNMKVTEVEYITQWGTAEDRTAEQQKKEQTT   89 (275)
T ss_dssp             TSCHHHHH---HHHHHTTCSEEEEEHHHHHHHHHTTCCHHHHHHHHHH-TTCEEEEEECBCCCSSTTTCCHHHHHHHHHH
T ss_pred             CCCHHHHH---HHHHHhCCCEEEEccccccccccCcCCHHHHHHHHHH-cCCceEEEeeccccCCCchhHHHHHHHHHHH
Confidence            45666554   5677899999999642100000111345556555553 3555555542  1               012


Q ss_pred             HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894          178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL  257 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l  257 (398)
                      ++.|...|++.|.+...-         ....+...+.+.++.+.+++.|+.+.  +.     +...-.+++.+.++.+.+
T Consensus        90 i~~A~~lG~~~v~~~~~~---------~~~~~~~~~~l~~l~~~a~~~gi~le--~~-----~~~~~~t~~~~~~l~~~v  153 (275)
T d2g0wa1          90 FHMARLFGVKHINCGLLE---------KIPEEQIIVALGELCDRAEELIIGLE--FM-----PYSGVADLQAAWRVAEAC  153 (275)
T ss_dssp             HHHHHHHTCCEEEECCCS---------CCCHHHHHHHHHHHHHHHTTSEEEEE--CC-----TTSSSCSHHHHHHHHHHH
T ss_pred             HHHHHHhCCceEecCCCC---------chHHHHHHHHHHHHHHHHHhcCeeEe--ee-----ccCCCCCHHHHHHHHHHh
Confidence            455666788877764431         12345666777777777777765443  11     112223566666665544


Q ss_pred             HhCCCCEEE-EccCcC----cCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCC
Q 015894          258 YDMGCSEIS-LGDTIG----VGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCP  332 (398)
Q Consensus       258 ~~~Gad~I~-L~DT~G----~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp  332 (398)
                         +-+.+. .-|+.=    ...|.       .+.+.+++--.++|.+|...-.......-.          ..+  .  
T Consensus       154 ---~~~~~g~~~D~~h~~~~~~~~~-------~~~~~~~~ri~~vHikD~~~~~~~~~~~~~----------~~~--~--  209 (275)
T d2g0wa1         154 ---GRDNAQLICDTWHWARANQTAE-------SIKNVPADRIVSIQLCDVHETPYKELREES----------LHD--R--  209 (275)
T ss_dssp             ---TCTTEEEEEEHHHHHHTTCCGG-------GGTTCCGGGEEEEEECBCCSSCCSSHHHHH----------HHB--C--
T ss_pred             ---ccccccccccchHHHhcCCCHH-------HHHHhcccceeEEEEEeccCCccccccccc----------ccc--c--
Confidence               222222 223211    11222       122233333477888875433211110000          000  0  


Q ss_pred             CCCCCCCCccHHHHHHHHHhCCCC
Q 015894          333 YAKGASGNVATEDVVYMLNGLGVR  356 (398)
Q Consensus       333 ~a~graGNa~lE~vv~~L~~~Gi~  356 (398)
                      ..+ +.|..+...++.+|+..|++
T Consensus       210 ~~p-G~G~id~~~i~~~L~~~gy~  232 (275)
T d2g0wa1         210 LAP-GEGYGDTVGFAKILKEHGVN  232 (275)
T ss_dssp             BCT-TSSSSCHHHHHHHHHHHTCC
T ss_pred             cCC-CCCCcCHHHHHHHHHHcCCC
Confidence            112 36889999999999987764

>d1vrda1 c.1.5.1 (A:1-85,A:213-457) Inosine monophosphate dehydrogenase (IMPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Inosine monophosphate dehydrogenase (IMPDH)
family: Inosine monophosphate dehydrogenase (IMPDH)
domain: Inosine monophosphate dehydrogenase (IMPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=92.30  E-value=2  Score=39.55  Aligned_cols=94  Identities=21%  Similarity=0.231  Sum_probs=62.0

Q ss_pred             HHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEE
Q 015894          217 DVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLA  296 (398)
Q Consensus       217 ~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~  296 (398)
                      +.++..|+....+...    +|      .+++ ..+.++.+.+.|++.|++ | +....+..+.+.++.+++.+|+.++-
T Consensus        77 ~~i~~vk~~~~~v~~~----vg------v~~~-~~e~~~~li~agvd~ivI-d-~A~G~~~~~~~~ik~ik~~~~~~~vi  143 (330)
T d1vrda1          77 RQVSIVKKTRLLVGAA----VG------TSPE-TMERVEKLVKAGVDVIVI-D-TAHGHSRRVIETLEMIKADYPDLPVV  143 (330)
T ss_dssp             HHHHHHHTCCBCCEEE----EC------SSTT-HHHHHHHHHHTTCSEEEE-C-CSCCSSHHHHHHHHHHHHHCTTSCEE
T ss_pred             HHHHHHhhhccEEEEE----Ee------cCHH-HHHHHHHHHHCCCCEEEE-e-cCCCCchhHHHHHHHHHHhCCCCCEE
Confidence            3345666666555432    22      1233 235577788999998887 4 56677888999999999999987665


Q ss_pred             EEeCCccchHHHHHHHHHHhCCCEEeeccccCCC
Q 015894          297 VHFHDTYGQALSNILASLQMGISTVDSSVSGLGG  330 (398)
Q Consensus       297 ~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGe  330 (398)
                      .+-=-+.-.    +...+++|||.|=+   |+|.
T Consensus       144 aGnV~t~~~----a~~l~~~GaD~v~V---Gig~  170 (330)
T d1vrda1         144 AGNVATPEG----TEALIKAGADAVKV---GVGP  170 (330)
T ss_dssp             EEEECSHHH----HHHHHHTTCSEEEE---CSSC
T ss_pred             eechhHHHH----HHHHHHcCCCEEee---cccc
Confidence            543333222    45567899988765   6665

>d1gvfa_ c.1.10.2 (A:) Tagatose-1,6-bisphosphate aldolase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class II FBP aldolase
domain: Tagatose-1,6-bisphosphate aldolase
species: Escherichia coli [TaxId: 562]

Probab=92.15  E-value=0.39  Score=43.78  Aligned_cols=118  Identities=14%  Similarity=0.120  Sum_probs=84.4

Q ss_pred             HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEccC-cCcCCHHHHHHHHHHHHhhCCC
Q 015894          215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGDT-IGVGTPGTVIPMLEAVLDAVPV  292 (398)
Q Consensus       215 ~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~DT-~G~~~P~~v~~lv~~l~~~~p~  292 (398)
                      ++++.+.|++.|+-|- .+.         -++.+.+..+++.+.+..... |.+.-. ...+....+..++..+.+..+ 
T Consensus         5 ~k~ll~~A~~~~yAV~-AfN---------v~~~e~~~avi~AAe~~~sPvIlq~~~~~~~~~~~~~~~~~~~~~a~~~~-   73 (284)
T d1gvfa_           5 TKYLLQDAQANGYAVP-AFN---------IHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYN-   73 (284)
T ss_dssp             SHHHHHHHHHHTCCEE-EEE---------CCSHHHHHHHHHHHHHHTCCCEEEECTTHHHHSCHHHHHHHHHHHHHHTT-
T ss_pred             HHHHHHHHHHCCcEEE-EEE---------ECCHHHHHHHHHHHHHHCCCEEEEcCHhHHhhCCHHHHHHHHHHHHHhcC-
Confidence            3567888999999874 232         135788888999998888764 444322 223455778888888877765 


Q ss_pred             CeEEEEeCCccchHHHHHHHHHHhCCC--EEeeccccCCCCCCCCCCCCCc-cHHHHHHHHHhCC
Q 015894          293 DKLAVHFHDTYGQALSNILASLQMGIS--TVDSSVSGLGGCPYAKGASGNV-ATEDVVYMLNGLG  354 (398)
Q Consensus       293 ~~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGecp~a~graGNa-~lE~vv~~L~~~G  354 (398)
                      +|+.+|.  |.|..+..+..|+++|.+  ++|+|-..+-+         |. -|-+++.+.+..|
T Consensus        74 vpV~lHl--DH~~~~e~i~~ai~~GftSVMiD~S~lp~ee---------Ni~~t~~vv~~ah~~g  127 (284)
T d1gvfa_          74 MPLALHL--DHHESLDDIRRKVHAGVRSAMIDGSHFPFAE---------NVKLVKSVVDFCHSQD  127 (284)
T ss_dssp             SCBEEEE--EEECCHHHHHHHHHTTCCEEEECCTTSCHHH---------HHHHHHHHHHHHHHTT
T ss_pred             CeEEeee--ccccchHHHHHHHhcCCCeEEEECCCCCHHH---------HHHHHHHHHHHHHhhc
Confidence            5777766  667889999999999998  77999887766         55 5566666665443

>d1mzha_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Aquifex aeolicus [TaxId: 63363]

Probab=91.77  E-value=0.87  Score=39.98  Aligned_cols=138  Identities=14%  Similarity=0.172  Sum_probs=85.2

Q ss_pred             HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894          178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL  257 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l  257 (398)
                      ++.|.+.|+.-|.++    +.|                   ++.|++..-.+.  ++.+.|.|... .+.+.-..-++.+
T Consensus        26 c~~A~~~~~~aVcV~----P~~-------------------v~~a~~~l~~vk--v~tVigFP~G~-~~~~~K~~E~~~A   79 (225)
T d1mzha_          26 VLKSEELGIYAVCVN----PYH-------------------VKLASSIAKKVK--VCCVIGFPLGL-NKTSVKVKEAVEA   79 (225)
T ss_dssp             HHHHHHTTCSEEEEC----GGG-------------------HHHHHHHCSSSE--EEEEESTTTCC-SCHHHHHHHHHHH
T ss_pred             HHHHHHhCCcEEEEC----HHH-------------------HHHHHhhccCCc--eEEEeccCCCC-CcHHHHHHHHHHH
Confidence            457788898888874    323                   223333322232  44456678654 4555554556788


Q ss_pred             HhCCCCEEEEccCcCcC---CHHHHHHHHHHHHhhCCCC----eEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCC
Q 015894          258 YDMGCSEISLGDTIGVG---TPGTVIPMLEAVLDAVPVD----KLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGG  330 (398)
Q Consensus       258 ~~~Gad~I~L~DT~G~~---~P~~v~~lv~~l~~~~p~~----~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGe  330 (398)
                      .+.||+.|-++=-.|.+   .-..+.+-++.+++..++.    .|+...-++... ...+..|+++|++.|=+|-+ .  
T Consensus        80 i~~GAdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~~ei-~~a~~~a~~aGadfiKTSTG-~--  155 (225)
T d1mzha_          80 VRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETPSAVHKVIVETPYLNEEEI-KKAVEICIEAGADFIKTSTG-F--  155 (225)
T ss_dssp             HHTTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHTCTTSEEEEECCGGGCCHHHH-HHHHHHHHHHTCSEEECCCS-C--
T ss_pred             HHcCCCeEEEeechhhhhcccHHHHHHHHHHHHHhccCceeehhhhhccCCHHHH-HHHHHHHHHcccceEeecCC-C--
Confidence            88999998776554543   2345666677777666542    244455555543 45667889999999998865 2  


Q ss_pred             CCCCCCCCCCccHHHHHHHHH
Q 015894          331 CPYAKGASGNVATEDVVYMLN  351 (398)
Q Consensus       331 cp~a~graGNa~lE~vv~~L~  351 (398)
                            +++++..|++-.+.+
T Consensus       156 ------~~~gat~e~v~~m~~  170 (225)
T d1mzha_         156 ------APRGTTLEEVRLIKS  170 (225)
T ss_dssp             ------SSSCCCHHHHHHHHH
T ss_pred             ------CCCCCCHHHHHHHHH
Confidence                  234577787766555

>d1vyra_ c.1.4.1 (A:) Pentaerythritol tetranirate reductase {Enterobacter cloacae [TaxId: 550]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: Pentaerythritol tetranirate reductase
species: Enterobacter cloacae [TaxId: 550]

Probab=91.76  E-value=0.93  Score=42.26  Aligned_cols=138  Identities=15%  Similarity=0.083  Sum_probs=82.9

Q ss_pred             HHHHHcCCCEEEEeccCc---hHHH-------hhhcCCCHHHHHHHHHHHHHHHHhC-CCc-EEEEEeeeecCC--CCCC
Q 015894          179 EAAVAAGAKEVAIFASAS---ESFS-------KSNINCTIEDSLIRYRDVALAAREL-SIP-VRGYLSCVVGCP--VEGM  244 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~~S---d~~~-------~~~~~~s~~~~l~~~~~~v~~ak~~-G~~-v~~~l~~~fg~~--~~~r  244 (398)
                      ++|.++|.|.|-|...=-   +.|+       +..+|-|.++=++.+.++++.+|+. |-. +.+-++..-..+  +.+-
T Consensus       167 ~rA~~aGfDgVEIH~ahGYLl~qFlSp~~N~RtDeYGGs~eNR~Rf~~Eii~aIr~~~g~d~i~~r~s~~~~~~~~~~gg  246 (363)
T d1vyra_         167 ANAREAGFDLVELHSAHGYLLHQFLSPSSNQRTDQYGGSVENRARLVLEVVDAVCNEWSADRIGIRVSPIGTFQNVDNGP  246 (363)
T ss_dssp             HHHHHTTCSEEEEEECTTSHHHHHHCTTTCCCCSTTSSSHHHHTHHHHHHHHHHHHHSCGGGEEEEECCSSCBTTBCCCT
T ss_pred             HHHHHhccceeeecccCceeeeeeecCcccccccccccchhhhhHhHHHHHhhhhhhcCCCCcceeecccccccchhhcc
Confidence            467789999998864421   1122       2234557888777788888888764 432 333333210011  1233


Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhC-CCEE
Q 015894          245 VPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMG-ISTV  321 (398)
Q Consensus       245 ~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aG-a~~V  321 (398)
                      .+.++..++++.+.+.|+|.|.+..+.-...|.....+...+++.+...-+....+ |    ...+-.+++.| ||.|
T Consensus       247 ~~~~e~~~~~~~l~~~gvd~i~vs~~~~~~~~~~~~~~~~~~~~~~~~~vi~~G~~-t----~~~ae~~l~~G~~DlV  319 (363)
T d1vyra_         247 NEEADALYLIEELAKRGIAYLHMSETDLAGGKPYSEAFRQKVRERFHGVIIGAGAY-T----AEKAEDLIGKGLIDAV  319 (363)
T ss_dssp             THHHHHHHHHHHHHHTTCSEEEEECCBTTBCCCCCHHHHHHHHHHCCSEEEEESSC-C----HHHHHHHHHTTSCSEE
T ss_pred             cchHHHHHHHHHHHhcCCeeeecccCCccCCccccHHHHHHHHHhcCceEEecCCC-C----HHHHHHHHHCCCccee
Confidence            56778889999999999998877644322222223345666777775433444443 3    45567888999 6765

>d1eyea_ c.1.21.1 (A:) Dihydropteroate synthetase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Dihydropteroate synthetase
domain: Dihydropteroate synthetase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=91.57  E-value=4.3  Score=36.04  Aligned_cols=167  Identities=14%  Similarity=0.145  Sum_probs=90.9

Q ss_pred             EEeCCCcccCCCCCCCCCHHHHHHHHHHHHhcCCCEEEEecCCC-CCcccCCCCHHHHHHH---HHhc--cCCcEEEEeC
Q 015894          100 IVEVGPRDGLQNEKNIVPAVVKVELIKLLVSSGLAVVEATSFVS-PKWVPQLADAKDVMAA---IQNV--EGARFPVLTP  173 (398)
Q Consensus       100 i~D~TLRDG~Q~~~~~~~~~~k~~ia~~L~~aGv~~IEvG~~~~-~~~~p~~~D~~~v~~~---i~~~--~~~~l~~l~~  173 (398)
                      |+-+|. |-..--|..++.+..++-++.|.+-|.+.|++|--.+ |..-+. ...+|+.+.   ++.+  .+..+++=++
T Consensus         7 IlN~Tp-DSFsdgg~~~~~~~a~~~a~~~~~~GAdiIDIGgeSTrPga~~i-s~~eE~~Rl~p~i~~~~~~~~~iSIDT~   84 (270)
T d1eyea_           7 VLNVTD-DSFSDGGCYLDLDDAVKHGLAMAAAGAGIVDVGGESSRPGATRV-DPAVETSRVIPVVKELAAQGITVSIDTM   84 (270)
T ss_dssp             EEECSC-CTTCSSCCCCSHHHHHHHHHHHHHTTCSEEEEECC---------------HHHHHHHHHHHHHTTCCEEEECS
T ss_pred             EEeCCC-CCCCCCCcCCCHHHHHHHHHHHHHCCCCEEEECCccCCCCCEee-echhhcccccceeeeecccceeechHhh
Confidence            455554 5555445567999999999999999999999996432 332221 112233222   2222  3455554456


Q ss_pred             CHhhHHHHHHcCCCEEEEeccC-chHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCC---C--C-C
Q 015894          174 NLKGFEAAVAAGAKEVAIFASA-SESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEG---M--V-P  246 (398)
Q Consensus       174 n~~~ie~a~~~Gv~~v~i~~~~-Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~---r--~-~  246 (398)
                      ..+-.+.|+++|++.|.=..+. .|.                  .+.+.+++.+..+.  +|+.-|.|...   .  + +
T Consensus        85 ~~~Va~~al~~Ga~iINDvsg~~~d~------------------~m~~~~a~~~~~~v--lmh~~g~~~~~~~~~~~~~~  144 (270)
T d1eyea_          85 RADVARAALQNGAQMVNDVSGGRADP------------------AMGPLLAEADVPWV--LMHWRAVSADTPHVPVRYGN  144 (270)
T ss_dssp             CHHHHHHHHHTTCCEEEETTTTSSCT------------------THHHHHHHHTCCEE--EECCCCSCTTCTTSCCCCSS
T ss_pred             hHHHHHHHHhcCCeEEEeccccccch------------------hHHhhhhhccccee--eeeccccccccccccccccc
Confidence            6777899999999998743222 121                  22334556666554  45443322211   0  0 1


Q ss_pred             H-----HHHHHHHHHHHhCCCCE--EEEccCcCcC-CHHHHHHHHHHHHh
Q 015894          247 P-----SKVAYVSKQLYDMGCSE--ISLGDTIGVG-TPGTVIPMLEAVLD  288 (398)
Q Consensus       247 ~-----~~l~~~a~~l~~~Gad~--I~L~DT~G~~-~P~~v~~lv~~l~~  288 (398)
                      +     .++.+..+.+...|+..  |.|==-.|.. ++.+-.++++.+.+
T Consensus       145 ~~~~i~~~~~~~~~~~~~~Gi~~~~IilDPGiGFgKt~~~n~~lL~~l~~  194 (270)
T d1eyea_         145 VVAEVRADLLASVADAVAAGVDPARLVLDPGLGFAKTAQHNWAILHALPE  194 (270)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTCCGGGEEEECCTTSSCCHHHHHHHHHTHHH
T ss_pred             hhhhhhhHHHHHHHHHHhccccceEEEEccccccCcccchHHHHHHHHHh
Confidence            1     24444566667788753  5554444443 45666677777654

>d1tqxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Plasmodium falciparum [TaxId: 5833]

Probab=91.46  E-value=0.34  Score=42.33  Aligned_cols=170  Identities=12%  Similarity=0.047  Sum_probs=102.1

Q ss_pred             HHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc-cCCcEEE--EeCCHhh-HHHHHHcCCCEEEEeccCch
Q 015894          122 VELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV-EGARFPV--LTPNLKG-FEAAVAAGAKEVAIFASASE  197 (398)
Q Consensus       122 ~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~-~~~~l~~--l~~n~~~-ie~a~~~Gv~~v~i~~~~Sd  197 (398)
                      .+-++.+.+.|++.|-+-... ..++|...=.....+.+++. ++..+-+  ++.+... ++...++|.+.+++..... 
T Consensus        18 ~~~i~~l~~~~~d~iHiDimD-G~Fvpn~t~g~~~v~~i~~~~~~~~~dvHLMv~~P~~~i~~~~~~~~~~i~~~~~~~-   95 (221)
T d1tqxa_          18 AEETQRMESLGAEWIHLDVMD-MHFVPNLSFGPPVINNLKKYTKSIFFDVHLMVEYPEKYVPLLKTSNQLTFHFEALNE-   95 (221)
T ss_dssp             HHHHHHHHHTTCSEEEEEEEB-SSSSSCBCCCHHHHHHHGGGCSSCEEEEEEESSCGGGGGGGCTTSSEEEEEGGGGTT-
T ss_pred             HHHHHHHHHcCCCEEEEECcc-CcCcCccccChHHHhhhhhcCCchhhhhhHHhhhhhhhhhhhhhcCceeEEeehhcc-
Confidence            455778899999976664211 11223222112345566643 6665554  4445433 4555667776665533221 


Q ss_pred             HHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE-c---cCcCc
Q 015894          198 SFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL-G---DTIGV  273 (398)
Q Consensus       198 ~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L-~---DT~G~  273 (398)
                                   ......+.++++|+.|..+...+.     |.   ++.+.+.++.   ....+|.|-+ +   .-.|.
T Consensus        96 -------------~~~~~~~~i~~i~~~g~~~Gial~-----p~---t~~~~~~~~l---~~~~~d~vlim~V~pG~~GQ  151 (221)
T d1tqxa_          96 -------------DTERCIQLAKEIRDNNLWCGISIK-----PK---TDVQKLVPIL---DTNLINTVLVMTVEPGFGGQ  151 (221)
T ss_dssp             -------------CHHHHHHHHHHHHTTTCEEEEEEC-----TT---SCGGGGHHHH---TTTCCSEEEEESSCTTCSSC
T ss_pred             -------------ccchhhHHHHHHHhcCCeEEEeec-----cc---cccccchhhc---ccccccEEEEEeeccccccc
Confidence                         234455778899999999875554     32   3444444432   1234665432 2   23343


Q ss_pred             CCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894          274 GTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       274 ~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                      ..=..+.+-|+.+|+..|+..|.+    |=|.-.-|+-....+||+.+
T Consensus       152 ~f~~~~l~KI~~lr~~~~~~~I~V----DGGIn~~~i~~l~~aGad~i  195 (221)
T d1tqxa_         152 SFMHDMMGKVSFLRKKYKNLNIQV----DGGLNIETTEISASHGANII  195 (221)
T ss_dssp             CCCGGGHHHHHHHHHHCTTCEEEE----ESSCCHHHHHHHHHHTCCEE
T ss_pred             ccCcchhHHHHHHHHhcCCcceEE----EcccCHHhHHHHHHcCCCEE
Confidence            334567777889999999866665    88998899999999999976

>d1vr6a1 c.1.10.4 (A:1-338) 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I DAHP synthetase
domain: 3-deoxy-D-arabino-heptulosonate-7-phosphate synthase (DAHP synthase, AroG)
species: Thermotoga maritima [TaxId: 2336]

Probab=91.42  E-value=3.8  Score=37.78  Aligned_cols=179  Identities=14%  Similarity=0.083  Sum_probs=112.4

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCC---CCCcccCCCCHHHHHHHHHhc---cCCcEEEEeCCHhhHHHHHHcCCCEE
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFV---SPKWVPQLADAKDVMAAIQNV---EGARFPVLTPNLKGFEAAVAAGAKEV  189 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~---~~~~~p~~~D~~~v~~~i~~~---~~~~l~~l~~n~~~ie~a~~~Gv~~v  189 (398)
                      =+.++..++++.+.++|.+.+--|.|-   +|.....+.  ++=++.++++   -+..+..=+.+..+++.+.+. +|.+
T Consensus       105 ES~e~~~~~A~~lke~g~~~~r~g~fKpRtsp~sf~g~g--~~gL~~l~~~k~~~glpvvTdV~~~~~~~~~~e~-~Dil  181 (338)
T d1vr6a1         105 EGREMLMETAHFLSELGVKVLRGGAYKPRTSPYSFQGLG--EKGLEYLREAADKYGMYVVTEALGEDDLPKVAEY-ADII  181 (338)
T ss_dssp             CCHHHHHHHHHHHHHTTCCEEECBSCCCCCSTTSCCCCT--HHHHHHHHHHHHHHTCEEEEECSSGGGHHHHHHH-CSEE
T ss_pred             CCHHHHHHHHHHHHHhCccccccceecccccccccccch--HHHHHHHHHHHhhcCceeEEeccchhhhhhhhce-eeeE
Confidence            367888999999999999998888763   232222222  3334444432   244443334677888888776 8999


Q ss_pred             EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEcc
Q 015894          190 AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGD  269 (398)
Q Consensus       190 ~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~D  269 (398)
                      .|-...          |..       .++++.+-+.|..|.  |.-      .--.+++.+...++.+...|-..|.||.
T Consensus       182 QI~A~~----------~~n-------~~LL~~~g~t~kpV~--lKk------G~~~s~~e~l~aae~i~~~Gn~~vilcE  236 (338)
T d1vr6a1         182 QIGARN----------AQN-------FRLLSKAGSYNKPVL--LKR------GFMNTIEEFLLSAEYIANSGNTKIILCE  236 (338)
T ss_dssp             EECGGG----------TTC-------HHHHHHHHTTCSCEE--EEC------CTTCCHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred             Eechhh----------ccC-------HHHHHHhhccCCcEE--ecC------ccccchhhhhhhHHHHHhcCCccceeee
Confidence            885332          111       244556667788775  331      1236899999999999999999888887


Q ss_pred             CcCcCCH-------HHHHHHHHHHHhhCCCCeEEE---EeCCccchHHHHHHHHHHhCCC--EEeecc
Q 015894          270 TIGVGTP-------GTVIPMLEAVLDAVPVDKLAV---HFHDTYGQALSNILASLQMGIS--TVDSSV  325 (398)
Q Consensus       270 T~G~~~P-------~~v~~lv~~l~~~~p~~~l~~---H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv  325 (398)
                      -- +.+.       .++.. +..+++. +..|+-+   |.=-+.-+...-+.||+.+||+  .|++=-
T Consensus       237 RG-~~t~~~~~~~~lD~~~-i~~~k~~-~~lPVi~DpsHs~G~r~~v~~larAAvA~GadGl~iE~Hp  301 (338)
T d1vr6a1         237 RG-IRTFEKATRNTLDISA-VPIIRKE-SHLPILVDPSHSGGRRDLVIPLSRAAIAVGAHGIIVEVHP  301 (338)
T ss_dssp             CC-BCCSCCSSSSBCCTTH-HHHHHHH-BSSCEEECHHHHHCSGGGHHHHHHHHHHHTCSEEEEEBCS
T ss_pred             cc-ccccccccccchhhcc-cceeecc-ccCceeeCCCCCCCchhHHHHHHHHHHHhCCCEEEEEeCC
Confidence            42 2111       12222 3334433 2334555   6555666778889999999998  556543

>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Bacillus anthracis [TaxId: 1392]

Probab=91.42  E-value=2.5  Score=37.40  Aligned_cols=45  Identities=11%  Similarity=0.188  Sum_probs=18.9

Q ss_pred             HHHHHHHHHHHHhCCCCEEEEc-cCcCcCCHHHHHHHHHHHHhhCC
Q 015894          247 PSKVAYVSKQLYDMGCSEISLG-DTIGVGTPGTVIPMLEAVLDAVP  291 (398)
Q Consensus       247 ~~~l~~~a~~l~~~Gad~I~L~-DT~G~~~P~~v~~lv~~l~~~~p  291 (398)
                      .....++++.+.++|++.+.+. =..-..+..++.+.++.+.+..|
T Consensus        84 ~~~~i~~a~~a~~~Gad~ilv~pP~~~~~s~~~i~~~~~~v~~~~~  129 (292)
T d1xkya1          84 THASIDLTKKATEVGVDAVMLVAPYYNKPSQEGMYQHFKAIAESTP  129 (292)
T ss_dssp             HHHHHHHHHHHHHTTCSEEEEECCCSSCCCHHHHHHHHHHHHHTCS
T ss_pred             HHHHHHHHHHHHHcCCCEEEECCCCCCCCCHHHHHHHHHHHhccCC
Confidence            3444444555555555543321 11122233444444444444443

>d1k77a_ c.1.15.5 (A:) Hypothetical protein YgbM (EC1530) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: Hypothetical protein YgbM (EC1530)
domain: Hypothetical protein YgbM (EC1530)
species: Escherichia coli [TaxId: 562]

Probab=91.38  E-value=0.93  Score=38.39  Aligned_cols=191  Identities=9%  Similarity=0.003  Sum_probs=100.6

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEe---CC------------------
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLT---PN------------------  174 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~---~n------------------  174 (398)
                      +|.++.   ++...++|++.||+..+..       .+.+++.+.+++ -+.++..+.   ..                  
T Consensus        15 ~pl~e~---i~~a~~~Gf~gIEl~~~~~-------~~~~~~~~~l~~-~gl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (260)
T d1k77a_          15 VPFIER---FAAARKAGFDAVEFLFPYN-------YSTLQIQKQLEQ-NHLTLALFNTAPGDINAGEWGLSALPGREHEA   83 (260)
T ss_dssp             SCGGGH---HHHHHHHTCSEEECSCCTT-------SCHHHHHHHHHH-TTCEEEEEECCCCCGGGTCSCSTTCTTCHHHH
T ss_pred             CCHHHH---HHHHHHhCCCEEEECCCCC-------CCHHHHHHHHHH-CCCcEEEEecccccccccccccccCHHHHHHH
Confidence            455555   4556678999999864321       345666666653 233333321   00                  


Q ss_pred             Hh----hHHHHHHcCCCEEEEeccCchHHHhhhcCCCH----HHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCC
Q 015894          175 LK----GFEAAVAAGAKEVAIFASASESFSKSNINCTI----EDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVP  246 (398)
Q Consensus       175 ~~----~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~----~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~  246 (398)
                      ..    .++.+...|+..+.+......      ...+.    +...+.+..+..++.+.|+.....-......+...-.+
T Consensus        84 ~~~~~~~~~~~~~l~~~~v~~~~~~~~------~~~~~~~~~~~~~~~l~~~~~~a~~~gi~~~~e~~~~~~~~~~~~~~  157 (260)
T d1k77a_          84 HADIDLALEYALALNCEQVHVMAGVVP------AGEDAERYRAVFIDNIRYAADRFAPHGKRILVEALSPGVKPHYLFSS  157 (260)
T ss_dssp             HHHHHHHHHHHHHTTCSEEECCCCBCC------TTSCHHHHHHHHHHHHHHHHHHHGGGTCEEEECCCCTTTSTTBSCCS
T ss_pred             HHHHHHHHHHHHhhCCCeeeecCCCCC------CCccHHHHHHHHHHHHHHHhhHHHhcCceeeccccccccccccccCC
Confidence            00    124456678888887654322      12233    34455567778888888987542111000011112234


Q ss_pred             HHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccc
Q 015894          247 PSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVS  326 (398)
Q Consensus       247 ~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~  326 (398)
                      ++.+.+++   .+.+.+.+.+..-.|.+.... .+.+..+++..+- -.++|..|..+-                     
T Consensus       158 ~~~~~~l~---~~v~~~~~~~~~D~~h~~~~~-~~~~~~~~~~~~~-i~~vH~~D~~~~---------------------  211 (260)
T d1k77a_         158 QYQALAIV---EEVARDNVFIQLDTFHAQKVD-GNLTHLIRDYAGK-YAHVQIAGLPDR---------------------  211 (260)
T ss_dssp             HHHHHHHH---HHHCCTTEEEEEEHHHHHHHT-CCHHHHHHHTTTS-EEEEEECCTTTC---------------------
T ss_pred             HHHHHHHH---HHhCCccccccccchhhhccC-CcHHHHHHHhccc-cceEeecCCCCC---------------------
Confidence            55555544   445655444443223222211 1123344443343 377888876432                     


Q ss_pred             cCCCCCCCCCCCCCccHHHHHHHHHhCCCC
Q 015894          327 GLGGCPYAKGASGNVATEDVVYMLNGLGVR  356 (398)
Q Consensus       327 GlGecp~a~graGNa~lE~vv~~L~~~Gi~  356 (398)
                          ++  + +.|..+...++..|++.|++
T Consensus       212 ----~~--p-G~G~id~~~i~~~L~~~GY~  234 (260)
T d1k77a_         212 ----HE--P-DDGEINYPWLFRLFDEVGYQ  234 (260)
T ss_dssp             ----CC--S-SSSSSCHHHHHHHHHHTTCC
T ss_pred             ----CC--C-CCcccCHHHHHHHHHHhCCC
Confidence                11  2 26899999999999998885

>d1qtwa_ c.1.15.1 (A:) Endonuclease IV {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: Endonuclease IV
domain: Endonuclease IV
species: Escherichia coli [TaxId: 562]

Probab=91.33  E-value=1.8  Score=37.58  Aligned_cols=223  Identities=11%  Similarity=0.085  Sum_probs=107.7

Q ss_pred             HHHHHHHhcCCCEEEEecCCCCC-cc-cCCC--CHHHHHHHHHh--ccCCcEEEEeC---C-----H-----------hh
Q 015894          123 ELIKLLVSSGLAVVEATSFVSPK-WV-PQLA--DAKDVMAAIQN--VEGARFPVLTP---N-----L-----------KG  177 (398)
Q Consensus       123 ~ia~~L~~aGv~~IEvG~~~~~~-~~-p~~~--D~~~v~~~i~~--~~~~~l~~l~~---n-----~-----------~~  177 (398)
                      +.++...++|++.||+. ..+|. |. |.+.  +.+++.+.+++  ++...+.+.++   |     .           +.
T Consensus        16 ~a~~~a~e~G~~~ieif-~~~P~~w~~~~~~~~~~~~~k~~~~~~gl~~~~~~~~~p~~~n~~~~~~~~r~~s~~~~~~~   94 (285)
T d1qtwa_          16 NAAIRAAEIDATAFALF-TKNQRQWRAAPLTTQTIDEFKAACEKYHYTSAQILPHDSYLINLGHPVTEALEKSRDAFIDE   94 (285)
T ss_dssp             HHHHHHHHTTCSEEECC-SSCSSCSSCCCCCHHHHHHHHHHHHHTTCCGGGBCCBCCTTCCTTCSSHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCEEEEE-CCCCCCCCCCCCCHHHHHHHHHHHHHcCCCcceeEecCCcccccccchHHHHHHHHHHHHHH
Confidence            35667889999999993 23343 32 2221  23344444443  22222333332   1     1           11


Q ss_pred             HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894          178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL  257 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l  257 (398)
                      ++.|.+.|++.+.+..+.-      ....+.++.++.+.+.++.+......+...+...-..+...-.+++.+.++.+. 
T Consensus        95 i~~a~~lG~~~vv~h~g~~------~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~le~~~~~~~~~~~~~~~~~~i~~~-  167 (285)
T d1qtwa_          95 MQRCEQLGLSLLNFHPGSH------LMQISEEDCLARIAESINIALDKTQGVTAVIENTAGQGSNLGFKFEHLAAIIDG-  167 (285)
T ss_dssp             HHHHHHTTCCEEEECCCBC------TTTSCHHHHHHHHHHHHHHHHHHCSSCEEEEECCCCCTTBCCSSHHHHHHHHHH-
T ss_pred             HHHHHHcCCCceeeeceec------cCcccHHHHHHHHHHHHHHHHHhccCCeEEEeeccccCCcCcCCHHHHHHHHHH-
Confidence            4556778998887754321      112356667777766666554443444433432221122222456666665543 


Q ss_pred             HhCC-CCEEEEc-cCc-------CcCCHHHHHHHHHHHHhh-CCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeecccc
Q 015894          258 YDMG-CSEISLG-DTI-------GVGTPGTVIPMLEAVLDA-VPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSG  327 (398)
Q Consensus       258 ~~~G-ad~I~L~-DT~-------G~~~P~~v~~lv~~l~~~-~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~G  327 (398)
                        .+ -+.+.++ ||.       ....+....+.+...... .++-...+|.||+.+---        .+.+. +.   .
T Consensus       168 --~~~~~~vgl~lD~~H~~~~G~d~~~~~~~~~~~~~~~~~~~~~~i~~vH~~D~~~~~g--------~~~d~-H~---~  233 (285)
T d1qtwa_         168 --VEDKSRVGVCIDTCHAFAAGYDLRTPAECEKTFADFARTVGFKYLRGMHLNDAKSTFG--------SRVDR-HH---S  233 (285)
T ss_dssp             --CSCGGGEEEEEEHHHHHHHTCCCSSHHHHHHHHHHHHHHTCGGGEEEEEECEESSCTT--------CCCCC-EE---C
T ss_pred             --hcccccceEecccchHHHcCCCcccHHHHHHHHHHHHHHhhhhhheEEeeccCCCCCC--------CCccc-cc---C
Confidence              33 2334443 321       123444444433333333 333346889988643110        01111 11   1


Q ss_pred             CCCCCCCCCCCCCccHHHHHHHHHhCCCCC------ccChHHHHHHHHHHHHHh
Q 015894          328 LGGCPYAKGASGNVATEDVVYMLNGLGVRT------NVDIRKLMIAGDFICKHL  375 (398)
Q Consensus       328 lGecp~a~graGNa~lE~vv~~L~~~Gi~t------~iDl~~L~~~~~~v~~~~  375 (398)
                      +        +.|+.+.+.++..|++.|++-      ..+-+...+-.+++++..
T Consensus       234 ~--------G~G~id~~~~~~~L~~~~~~g~~iilE~~~~~~~~~~i~~lr~~~  279 (285)
T d1qtwa_         234 L--------GEGNIGHDAFRWIMQDDRFDGIPLILETINPDIWAEEIAWLKAQQ  279 (285)
T ss_dssp             T--------TTSSSCSHHHHHHHTCGGGTTSEEEECCSCGGGHHHHHHHHHHHT
T ss_pred             C--------CCCCcCHHHHHHHHhhhCCCCCeEEEeCCCCccCHHHHHHHHHhh
Confidence            2        368999999999998743320      123333344445665544

>d1rvga_ c.1.10.2 (A:) Fructose-bisphosphate aldolase (FBP aldolase) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class II FBP aldolase
domain: Fructose-bisphosphate aldolase (FBP aldolase)
species: Thermus aquaticus [TaxId: 271]

Probab=91.30  E-value=0.42  Score=43.99  Aligned_cols=117  Identities=18%  Similarity=0.154  Sum_probs=80.5

Q ss_pred             HHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCE-EEEccCcCcCCHHHHHHHHHHHHhhCCCC
Q 015894          215 YRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSE-ISLGDTIGVGTPGTVIPMLEAVLDAVPVD  293 (398)
Q Consensus       215 ~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~-I~L~DT~G~~~P~~v~~lv~~l~~~~p~~  293 (398)
                      ++++.+.|++.|+-|- .+.+         ++.+.+..+++.+.+..... |.+.-...-..+.....++..+.+.. .+
T Consensus         5 ~k~il~~A~~~~yAV~-AfN~---------~n~e~~~avi~AAee~~sPvIiq~s~~~~~~~~~~~~~~~~~~a~~~-~v   73 (305)
T d1rvga_           5 GLEILKKAREEGYGVG-AFNV---------NNMEFLQAVLEAAEEQRSPVILALSEGAMKYGGRALTLMAVELAKEA-RV   73 (305)
T ss_dssp             HHHHHHHHHHHTCCEE-EEEC---------CSHHHHHHHHHHHHHTTCCEEEEEEHHHHHHHHHHHHHHHHHHHHHC-SS
T ss_pred             HHHHHHHHHHCCeEEE-EEEE---------CCHHHHHHHHHHHHHHCCCEEEECCccHHhHccHHHHHHHHHHHhcc-CC
Confidence            3567788899999774 2331         46788999999999998874 55544333333444555555555544 35


Q ss_pred             eEEEEeCCccchHHHHHHHHHHhCCC--EEeeccccCCCCCCCCCCCCCc-cHHHHHHHHHhC
Q 015894          294 KLAVHFHDTYGQALSNILASLQMGIS--TVDSSVSGLGGCPYAKGASGNV-ATEDVVYMLNGL  353 (398)
Q Consensus       294 ~l~~H~Hnd~GlA~ANalaAl~aGa~--~VD~Sv~GlGecp~a~graGNa-~lE~vv~~L~~~  353 (398)
                      |+.+|.  |.|.-...+..|+++|.+  ++|+|-..+-+         |. -|.+++...+.+
T Consensus        74 pv~lHl--DH~~~~e~i~~ai~~GftSVMiDgS~l~~ee---------Ni~~Tk~vv~~Ah~~  125 (305)
T d1rvga_          74 PVAVHL--DHGSSYESVLRALRAGFTSVMIDKSHEDFET---------NVRETRRVVEAAHAV  125 (305)
T ss_dssp             CEEEEE--EEECSHHHHHHHHHTTCSEEEECCTTSCHHH---------HHHHHHHHHHHHHHT
T ss_pred             cEEEee--hhccChhhhHHHHhcCCceEEEcCccccHHH---------HHHHHHHHHHHhchh
Confidence            677665  567778899999999998  77999887776         55 456666666643

>d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: N-acetylneuraminate lyase
species: Escherichia coli [TaxId: 562]

Probab=90.63  E-value=1.5  Score=38.97  Aligned_cols=78  Identities=12%  Similarity=0.082  Sum_probs=35.4

Q ss_pred             HHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHh-C-CCCEEEE--ccCcCcCCHHHHHHHHHHHHhhCC
Q 015894          216 RDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYD-M-GCSEISL--GDTIGVGTPGTVIPMLEAVLDAVP  291 (398)
Q Consensus       216 ~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~-~-Gad~I~L--~DT~G~~~P~~v~~lv~~l~~~~p  291 (398)
                      .+.++.|++.|..... ++    .|.....+.+.+.+..+++.+ . ....+..  +...|...+.   +++..+.+ .|
T Consensus        87 i~~a~~a~~~Gad~~~-v~----~p~~~~~~~~~~~~~~~~~~~~~~~~~ii~y~~P~~~g~~l~~---~~l~~L~~-~p  157 (295)
T d1hl2a_          87 QQLAASAKRYGFDAVS-AV----TPFYYPFSFEEHCDHYRAIIDSADGLPMVVYNIPARSGVKLTL---DQINTLVT-LP  157 (295)
T ss_dssp             HHHHHHHHHHTCSEEE-EE----CCCSSCCCHHHHHHHHHHHHHHHTTSCEEEEECHHHHCCCCCH---HHHHHHHT-ST
T ss_pred             HHHHHHHHhcCCceee-ee----eccccCCChHHHHHHHHHHhcccCcCccccccccccccccccc---cccccccc-Cc
Confidence            3445677777776421 11    344344555555554444333 3 2233322  3345544443   23334433 46


Q ss_pred             CCeEEE-EeCCcc
Q 015894          292 VDKLAV-HFHDTY  303 (398)
Q Consensus       292 ~~~l~~-H~Hnd~  303 (398)
                      ++ +++ ..+.|.
T Consensus       158 nv-vgiK~~~~~~  169 (295)
T d1hl2a_         158 GV-GALKQTSGDL  169 (295)
T ss_dssp             TE-EEEEECCCCH
T ss_pred             ch-hhhccccccH
Confidence            54 455 455553

>d1tv8a_ c.1.28.3 (A:) Molybdenum cofactor biosynthesis protein A MoaA {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Radical SAM enzymes
family: MoCo biosynthesis proteins
domain: Molybdenum cofactor biosynthesis protein A MoaA
species: Staphylococcus aureus [TaxId: 1280]

Probab=90.46  E-value=2.8  Score=36.86  Aligned_cols=140  Identities=13%  Similarity=0.051  Sum_probs=86.9

Q ss_pred             CCCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeC----CHhhHHHHHHcCCCEEE
Q 015894          115 IVPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTP----NLKGFEAAVAAGAKEVA  190 (398)
Q Consensus       115 ~~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~----n~~~ie~a~~~Gv~~v~  190 (398)
                      .++.++..++++.+.+.|+..+..+.. .|-.   ..|..+++.......+.....++-    +.+-++...+.|++.|.
T Consensus        47 ~ls~e~~~~li~~~~~~g~~~v~~~GG-Ep~l---~~~~~e~i~~~~~~~~~~~~~~Tng~ll~~~~~~~l~~~g~~~i~  122 (327)
T d1tv8a_          47 LLTFDEMARIAKVYAELGVKKIRITGG-EPLM---RRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRIN  122 (327)
T ss_dssp             SCCHHHHHHHHHHHHHTTCCEEEEESS-CGGG---STTHHHHHHHHTTCTTCCEEEEEECSTTHHHHHHHHHHHTCCEEE
T ss_pred             cCCHHHHHHHHHHHHHcCCeEEEeCCC-cccc---cccHHHHHHHHhhhccccccccccccccchhHHHHHHHcCCCEEe
Confidence            378999999999999999998887532 1111   124444444444333333334443    23557778899999999


Q ss_pred             EeccCchHHHhhhc-CCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEE
Q 015894          191 IFASASESFSKSNI-NCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEIS  266 (398)
Q Consensus       191 i~~~~Sd~~~~~~~-~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~  266 (398)
                      +.+...+......+ +.  .-.++.....++.+++.|+.+.+.++..      .....+.+.++.+.+.+.+++...
T Consensus       123 iSldg~~~e~~~~~rg~--~g~~~~~~~~~~~~~~~g~~~~~~~~v~------~~~n~~~~~~~~~~~~~~~~~~~~  191 (327)
T d1tv8a_         123 VSLDAIDDTLFQSINNR--NIKATTILEQIDYATSIGLNVKVNVVIQ------KGINDDQIIPMLEYFKDKHIEIRF  191 (327)
T ss_dssp             EECCCSSHHHHHHHHSS--CCCHHHHHHHHHHHHHTTCEEEEEEEEC------TTTTGGGHHHHHHHHHHTTCCEEE
T ss_pred             eecccCCHHHhhhheee--ccccchhhhHHHHHHHcCCCcceeEEEe------cCccccccHHHHHHHHhhccccce
Confidence            97766543211111 11  1225666778889999999887655432      113445666778888888887533

>d1olta_ c.1.28.2 (A:) Oxygen-independent coproporphyrinogen III oxidase HemN {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Radical SAM enzymes
family: Oxygen-independent coproporphyrinogen III oxidase HemN
domain: Oxygen-independent coproporphyrinogen III oxidase HemN
species: Escherichia coli [TaxId: 562]

Probab=90.09  E-value=1.4  Score=42.10  Aligned_cols=109  Identities=15%  Similarity=0.174  Sum_probs=73.9

Q ss_pred             HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHHH
Q 015894          175 LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIP-VRGYLSCVVGCPVEGMVPPSKVAYV  253 (398)
Q Consensus       175 ~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~-v~~~l~~~fg~~~~~r~~~~~l~~~  253 (398)
                      .+.++...+.|+.+|.+-+..=+-.....+|+.  ...+.+.++++.+|+.|+. |.+.++  +|.|..   +++.+.+-
T Consensus       150 ~~~l~~l~~~G~nRiSlGvQs~~~~vl~~i~R~--~~~~~~~~~~~~~r~~g~~~vn~DLI--~GlPgq---T~~~~~~t  222 (441)
T d1olta_         150 LDVLDHLRAEGFNRLSMGVQDFNKEVQRLVNRE--QDEEFIFALLNHAREIGFTSTNIDLI--YGLPKQ---TPESFAFT  222 (441)
T ss_dssp             THHHHHHHHTTCCEEEEEEECCCHHHHHHHTCC--CCHHHHHHHHHHHHHTTCCSCEEEEE--ESCTTC---CHHHHHHH
T ss_pred             hHHHHHHHHhCCceEEecchhcchhhhhhhhcC--CCHHHHHHHHHHHHhcccceeecccc--cccCCc---chHHHHHH
Confidence            455788889999998885544444444455543  2234456778999999986 777776  677754   67888888


Q ss_pred             HHHHHhCCCCEEEEcc------C---------cCcCCHHHHHHHHHHHHhhC
Q 015894          254 SKQLYDMGCSEISLGD------T---------IGVGTPGTVIPMLEAVLDAV  290 (398)
Q Consensus       254 a~~l~~~Gad~I~L~D------T---------~G~~~P~~v~~lv~~l~~~~  290 (398)
                      ++.+.++++++|.+-.      |         ...-.+++..++.....+.+
T Consensus       223 l~~~~~l~pd~is~y~~~~~p~~~~~q~~~~~~~lp~~~~~~~~~~~~~~~L  274 (441)
T d1olta_         223 LKRVAELNPDRLSVFNYAHLPTIFAAQRKIKDADLPSPQQKLDILQETIAFL  274 (441)
T ss_dssp             HHHHHHHCCSEEEEEECCCCTTTSGGGGGSCGGGSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhCCCccccccceeccchhHhhhhccccchhhhHHHHHHHHHHHHHH
Confidence            8999999999987732      1         12234566666666655543

>d1rpxa_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Potato (Solanum tuberosum) [TaxId: 4113]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Potato (Solanum tuberosum) [TaxId: 4113]

Probab=89.93  E-value=0.11  Score=46.09  Aligned_cols=188  Identities=14%  Similarity=0.168  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHhcCCCEEEE----ecCCCCCcccCCCCHHHHHHHHHhccCCcEEE--EeCCH-hhHHHHHHcCCCEEEEe
Q 015894          120 VKVELIKLLVSSGLAVVEA----TSFVSPKWVPQLADAKDVMAAIQNVEGARFPV--LTPNL-KGFEAAVAAGAKEVAIF  192 (398)
Q Consensus       120 ~k~~ia~~L~~aGv~~IEv----G~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~n~-~~ie~a~~~Gv~~v~i~  192 (398)
                      .-.+-++.|.++|++.|-+    |.|+     |.+.-..+.++.++..++..+-+  ++.+. .-++..+++|++.|.+.
T Consensus        24 ~l~~~i~~l~~~g~d~iHiDImDG~Fv-----pn~t~~~~~v~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~~~i~~H   98 (230)
T d1rpxa_          24 KLGEQVKAIEQAGCDWIHVDVMDGRFV-----PNITIGPLVVDSLRPITDLPLDVHLMIVEPDQRVPDFIKAGADIVSVH   98 (230)
T ss_dssp             GHHHHHHHHHHTTCCCEEEEEEBSSSS-----SCBCCCHHHHHHHGGGCCSCEEEEEESSSHHHHHHHHHHTTCSEEEEE
T ss_pred             HHHHHHHHHHHcCCCEEEEeCccCCcC-----CccccChHHHhhhhhccCceeeeeeeecchhhhHHHHhhcccceeEEe
Confidence            3456778889999997666    3444     33332234566777666655444  45554 45788899999999887


Q ss_pred             ccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc----
Q 015894          193 ASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG----  268 (398)
Q Consensus       193 ~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~----  268 (398)
                      .-..+.              ..+.++++++|++|..+...+.     |.   ++.+.+.++..     -+|.|-+-    
T Consensus        99 ~E~~~~--------------~~~~~~i~~ik~~g~k~Gialn-----p~---T~~~~l~~~l~-----~vD~VllM~V~P  151 (230)
T d1rpxa_          99 CEQSST--------------IHLHRTINQIKSLGAKAGVVLN-----PG---TPLTAIEYVLD-----AVDLVLIMSVNP  151 (230)
T ss_dssp             CSTTTC--------------SCHHHHHHHHHHTTSEEEEEEC-----TT---CCGGGGTTTTT-----TCSEEEEESSCT
T ss_pred             cccccc--------------ccHHHHHHHHHHcCCeEEEEeC-----CC---CCHHHHHHHHh-----hCCEEEEEEecC
Confidence            643221              1234667888999998875443     32   45555555442     25654332    


Q ss_pred             cCcCcCCHHHHHHHHHHHH----hhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHH
Q 015894          269 DTIGVGTPGTVIPMLEAVL----DAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATE  344 (398)
Q Consensus       269 DT~G~~~P~~v~~lv~~l~----~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE  344 (398)
                      -..|...=..+.+.++.++    ++.++..|++    |-|.-.-|+-...++||+.+=+. .++         -++...+
T Consensus       152 Gf~GQ~f~~~~~~kI~~~~~~~~~~~~~~~I~v----DGGIn~~~i~~l~~~Gad~~V~G-S~i---------f~~~d~~  217 (230)
T d1rpxa_         152 GFGGQSFIESQVKKISDLRKICAERGLNPWIEV----DGGVGPKNAYKVIEAGANALVAG-SAV---------FGAPDYA  217 (230)
T ss_dssp             TCSSCCCCTTHHHHHHHHHHHHHHHTCCCEEEE----ESSCCTTTHHHHHHHTCCEEEES-HHH---------HTSSCHH
T ss_pred             CcccchhhhhhHHHHHHHHHHHHhcCCceEEEE----ECCcCHHHHHHHHHcCCCEEEEC-hHH---------HCCCCHH
Confidence            2223322234445555544    3345555666    67777778888899999977332 111         2244566


Q ss_pred             HHHHHHHhC
Q 015894          345 DVVYMLNGL  353 (398)
Q Consensus       345 ~vv~~L~~~  353 (398)
                      +.+..|+..
T Consensus       218 ~~i~~lk~~  226 (230)
T d1rpxa_         218 EAIKGIKTS  226 (230)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHHh
Confidence            666666653

>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Thermotoga maritima [TaxId: 2336]

Probab=89.48  E-value=3.6  Score=36.20  Aligned_cols=38  Identities=13%  Similarity=-0.033  Sum_probs=17.6

Q ss_pred             HHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC
Q 015894          218 VALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM  260 (398)
Q Consensus       218 ~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~  260 (398)
                      .++.|++.|....   +  ...|.-...+.+.+.+..+++.++
T Consensus        88 ~a~~A~~~Gad~v---~--v~pP~y~~~s~~~i~~~~~~ia~a  125 (295)
T d1o5ka_          88 LVKQAEKLGANGV---L--VVTPYYNKPTQEGLYQHYKYISER  125 (295)
T ss_dssp             HHHHHHHHTCSEE---E--EECCCSSCCCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCCEE---E--EeCCCCCCCCHHHHHHHHHHHHhc
Confidence            3455555565532   1  112333344555555555555543

>d1qwga_ c.1.27.1 (A:) (2r)-phospho-3-sulfolactate synthase ComA {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (2r)-phospho-3-sulfolactate synthase ComA
family: (2r)-phospho-3-sulfolactate synthase ComA
domain: (2r)-phospho-3-sulfolactate synthase ComA
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=89.42  E-value=1.3  Score=39.36  Aligned_cols=149  Identities=15%  Similarity=0.070  Sum_probs=95.8

Q ss_pred             HHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCC-CCCCCCHHHHHHHHHHHHhC
Q 015894          182 VAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCP-VEGMVPPSKVAYVSKQLYDM  260 (398)
Q Consensus       182 ~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~-~~~r~~~~~l~~~a~~l~~~  260 (398)
                      ...-+|.+-+....+-.+.        ++   -+++-++.++++|+.|.      +|.. .+..+....+.++.+.+.++
T Consensus        35 ag~yID~~K~g~Gt~~l~p--------~~---~l~eKI~l~~~~~V~v~------~GGtlfE~a~~qg~~~~y~~~~~~l   97 (251)
T d1qwga_          35 CGDYIDFVKFGWGTSAVID--------RD---VVKEKINYYKDWGIKVY------PGGTLFEYAYSKGKFDEFLNECEKL   97 (251)
T ss_dssp             HGGGCSEEEECTTGGGGSC--------HH---HHHHHHHHHHTTTCEEE------ECHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhhheeEEEecCceeeecC--------HH---HHHHHHHHHHHcCCeEe------CCcHHHHHHHHcCCHHHHHHHHHHc
Confidence            3345899999777665542        22   34577899999999875      2210 00001112345577788899


Q ss_pred             CCCEEEEccCcCcCCHHHHHHHHHHHHhh-CCCCeEEEEeCC-------ccchHHHHHHHHHHhCCCEE--eeccc----
Q 015894          261 GCSEISLGDTIGVGTPGTVIPMLEAVLDA-VPVDKLAVHFHD-------TYGQALSNILASLQMGISTV--DSSVS----  326 (398)
Q Consensus       261 Gad~I~L~DT~G~~~P~~v~~lv~~l~~~-~p~~~l~~H~Hn-------d~GlA~ANalaAl~aGa~~V--D~Sv~----  326 (398)
                      |.+.|-+.|...-+...+-.++|+.+++. +- +.-++|..+       +.-.-+-.+...++|||..|  ++-=.    
T Consensus        98 Gf~~iEiSdg~~~i~~~~~~~~I~~~~~~G~~-V~~EvG~K~~~~~~~~~~~~~i~~~~~~LeaGA~~ViiEarEsg~~~  176 (251)
T d1qwga_          98 GFEAVEISDGSSDISLEERNNAIKRAKDNGFM-VLTEVGKKMPDKDKQLTIDDRIKLINFDLDAGADYVIIEGRESGKGK  176 (251)
T ss_dssp             TCCEEEECCSSSCCCHHHHHHHHHHHHHTTCE-EEEEECCSSHHHHTTCCHHHHHHHHHHHHHHTCSEEEECCTTTCCSS
T ss_pred             CCCEEEEcCCccCCCHHHHHHHHHHHHhCCCE-EeecccCCCCCCccccCHHHHHHHHHHHHHCCCceeEeehhhcCCcc
Confidence            99999999999999999999999999876 42 224444332       11222444777799999954  65443    


Q ss_pred             cCCCCCCCCCCCCCccHHHHHHHHHhCC
Q 015894          327 GLGGCPYAKGASGNVATEDVVYMLNGLG  354 (398)
Q Consensus       327 GlGecp~a~graGNa~lE~vv~~L~~~G  354 (398)
                      |+=+      ..|+.....+-..++..+
T Consensus       177 Gi~~------~~g~~r~~~i~~i~~~l~  198 (251)
T d1qwga_         177 GLFD------KEGKVKENELDVLAKNVD  198 (251)
T ss_dssp             TTBC------TTSCBCHHHHHHHHTTSC
T ss_pred             ceec------CCCChhHHHHHHHHHhCC
Confidence            4445      678887665555554343

>d1ps9a1 c.1.4.1 (A:1-330) 2,4-dienoyl-CoA reductase, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: FMN-linked oxidoreductases
family: FMN-linked oxidoreductases
domain: 2,4-dienoyl-CoA reductase, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=89.09  E-value=4.2  Score=37.03  Aligned_cols=136  Identities=18%  Similarity=0.106  Sum_probs=82.6

Q ss_pred             HHHHHcCCCEEEEeccC--------chH--HHhhhcCCCHHHHHHHHHHHHHHHHhC-C--CcEEEEEeeeecCCCCCCC
Q 015894          179 EAAVAAGAKEVAIFASA--------SES--FSKSNINCTIEDSLIRYRDVALAAREL-S--IPVRGYLSCVVGCPVEGMV  245 (398)
Q Consensus       179 e~a~~~Gv~~v~i~~~~--------Sd~--~~~~~~~~s~~~~l~~~~~~v~~ak~~-G--~~v~~~l~~~fg~~~~~r~  245 (398)
                      ++|.++|.|.|-|...-        |+.  +++..+|-|.++=+..+.++++.+|+. |  +.+.+-++..-  ...+-.
T Consensus       148 ~ra~~AGfDgVEIh~ahGyLl~qFlSp~~N~RtDeYGGs~enR~Rf~~Eii~air~~vg~d~~v~~R~s~~d--~~~~g~  225 (330)
T d1ps9a1         148 QLAREAGYDGVEVMGSEGYLINEFLTLRTNQRSDQWGGDYRNRMRFAVEVVRAVRERVGNDFIIIYRLSMLD--LVEDGG  225 (330)
T ss_dssp             HHHHHTTCSEEEEEECBTSHHHHHHCTTTCCCCSTTSSSHHHHHHHHHHHHHHHHHHHCSSSEEEEEEEEEC--CSTTCC
T ss_pred             HHHHHhCcCeeeeccchHHHHHHHHHhhcccccccCCccHhhhhHHHHHHHHHHHHHcCCCceeEecccccc--cccCCC
Confidence            46678999999886541        222  234445667787777788888777764 4  34444444321  122346


Q ss_pred             CHHHHHHHHHHHHhCCCCEEEEcc--------CcCcCCH-HHHHHHHHHHHhhCCCCeEEEEeC-CccchHHHHHHHHHH
Q 015894          246 PPSKVAYVSKQLYDMGCSEISLGD--------TIGVGTP-GTVIPMLEAVLDAVPVDKLAVHFH-DTYGQALSNILASLQ  315 (398)
Q Consensus       246 ~~~~l~~~a~~l~~~Gad~I~L~D--------T~G~~~P-~~v~~lv~~l~~~~p~~~l~~H~H-nd~GlA~ANalaAl~  315 (398)
                      +.++..++++.+.+.|++.+.+.-        ....-.| .....+.+.+|+.+. +|+..-+. +|    ...+..+++
T Consensus       226 ~~~~~~~~~~~l~~~g~d~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ik~~~~-~pvi~~G~i~~----~~~ae~~l~  300 (330)
T d1ps9a1         226 TFAETVELAQAIEAAGATIINTGIGWHEARIPTIATPVPRGAFSWVTRKLKGHVS-LPLVTTNRIND----PQVADDILS  300 (330)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEEECBTTCSSCSSSTTSCTTTTHHHHHHHTTSCS-SCEEECSSCCS----HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhhhhhhhcccccccccccccCCCCcchhHHHHHHHHHhhCC-ceEEEeCCCCC----HHHHHHHHH
Confidence            789999999999999999876531        1111112 334456667776554 45554433 23    344567788


Q ss_pred             hC-CCEE
Q 015894          316 MG-ISTV  321 (398)
Q Consensus       316 aG-a~~V  321 (398)
                      .| +|.|
T Consensus       301 ~g~~D~V  307 (330)
T d1ps9a1         301 RGDADMV  307 (330)
T ss_dssp             TTSCSEE
T ss_pred             CCCcchh
Confidence            88 7754

>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Deoxyribose-phosphate aldolase DeoC
species: Thermotoga maritima [TaxId: 2336]

Probab=88.92  E-value=2.5  Score=37.48  Aligned_cols=140  Identities=19%  Similarity=0.154  Sum_probs=91.4

Q ss_pred             HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894          178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL  257 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l  257 (398)
                      .+.|.+.|+.-|.++-    .|            +..+   .+..+..++.|    +.+.|.|.. ..+.+.-..-++.+
T Consensus        57 c~~A~~~~~aaVcV~P----~~------------v~~a---~~~L~gs~v~v----~tVigFP~G-~~~~~~K~~Ea~~A  112 (251)
T d1o0ya_          57 CLEARENRFHGVCVNP----CY------------VKLA---REELEGTDVKV----VTVVGFPLG-ANETRTKAHEAIFA  112 (251)
T ss_dssp             HHHHHHHTCSEEEECG----GG------------HHHH---HHHHTTSCCEE----EEEESTTTC-CSCHHHHHHHHHHH
T ss_pred             HHHHhhcCceEEEECH----HH------------HHHH---HHHhcCCCceE----EeeccCCCC-CCcHHHHHHHHHHH
Confidence            4577888998888852    22            1222   22333445554    344566764 45555555557788


Q ss_pred             HhCCCCEEEEccCcCcC---CHHHHHHHHHHHHhhCCC----CeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCC
Q 015894          258 YDMGCSEISLGDTIGVG---TPGTVIPMLEAVLDAVPV----DKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGG  330 (398)
Q Consensus       258 ~~~Gad~I~L~DT~G~~---~P~~v~~lv~~l~~~~p~----~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGe  330 (398)
                      .+.||+.|-++=-.|.+   .-..+++-++.+++..++    +.|+...-++..+- ..+..|+++|++.|=+|-+ .  
T Consensus       113 i~~GAdEID~Vin~~~l~~g~~~~v~~ei~~v~~~~~~~~lKVIlEt~~L~~~e~~-~a~~ia~~aGadfvKTSTG-f--  188 (251)
T d1o0ya_         113 VESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETCYLDTEEKI-AACVISKLAGAHFVKTSTG-F--  188 (251)
T ss_dssp             HHHTCSEEEEECCHHHHHTTCHHHHHHHHHHHHHHTTTSEEEEECCGGGCCHHHHH-HHHHHHHHTTCSEEECCCS-S--
T ss_pred             HHcCCceEEEEeccchhhcCCHHHHHHHHHHHHHHhcccceeeeecccccCcHHHH-HHHHHHHHhCcceeeccCC-C--
Confidence            89999999887776764   556777778888877643    23555667777666 4578889999999998865 2  


Q ss_pred             CCCCCCCCCCccHHHHHHHHH
Q 015894          331 CPYAKGASGNVATEDVVYMLN  351 (398)
Q Consensus       331 cp~a~graGNa~lE~vv~~L~  351 (398)
                            .+|.+..|++-.+.+
T Consensus       189 ------~~~gat~e~V~~m~~  203 (251)
T d1o0ya_         189 ------GTGGATAEDVHLMKW  203 (251)
T ss_dssp             ------SSCCCCHHHHHHHHH
T ss_pred             ------CCCCcCHHHHHHHHH
Confidence                  234567777766554

>d2zdra2 c.1.10.6 (A:2-281) Capsule biosynthesis protein SiaC, N-terminal domain {Neisseria meningitidis [TaxId: 487]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: NeuB-like
domain: Capsule biosynthesis protein SiaC, N-terminal domain
species: Neisseria meningitidis [TaxId: 487]

Probab=88.75  E-value=7.4  Score=34.34  Aligned_cols=181  Identities=15%  Similarity=0.094  Sum_probs=115.1

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEecC-----CCCCcc---c--CCC-----------CHHHHHHHHHh--ccCCcEEEEeC
Q 015894          117 PAVVKVELIKLLVSSGLAVVEATSF-----VSPKWV---P--QLA-----------DAKDVMAAIQN--VEGARFPVLTP  173 (398)
Q Consensus       117 ~~~~k~~ia~~L~~aGv~~IEvG~~-----~~~~~~---p--~~~-----------D~~~v~~~i~~--~~~~~l~~l~~  173 (398)
                      +.+.-.++++...++|.+.|-.=.+     ..++..   +  ...           ..++...+.+.  ..+..+.+-+.
T Consensus        32 d~~~a~~lI~~a~~sGadaVKfQ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~~~~~~~l~~~~k~~~i~~~~s~f  111 (280)
T d2zdra2          32 SLKTAFEMVDAAYNAGAEVVKHQTHIVEDEMSDEAKQVIPGNADVSIYEIMERCALNEEDEIKLKEYVESKGMIFISTPF  111 (280)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEEECCHHHHCCGGGGGCCCTTCSSCHHHHHHHHCCCHHHHHHHHHHHHHTTCEEEEEEC
T ss_pred             CHHHHHHHHHHHHHhCCCEEEecCcccchhcccccccccccccccccccccccccccchhhHHHHHHHHhcCCccccccc
Confidence            6777889999999999999876432     111100   0  000           11222222221  23555555556


Q ss_pred             CHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHH
Q 015894          174 NLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYV  253 (398)
Q Consensus       174 n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~  253 (398)
                      ..+.++.+.+.|++.+-+.-.  +.              .. .++++.+.+.+.++-  ++       .|..+.+++.+.
T Consensus       112 d~~s~~~~~~~~~~~~KIaS~--d~--------------~n-~~Li~~i~k~~kpii--iS-------tG~s~~~EI~~a  165 (280)
T d2zdra2         112 SRAAALRLQRMDIPAYKIGSG--EC--------------NN-YPLIKLVASFGKPII--LS-------TGMNSIESIKKS  165 (280)
T ss_dssp             SHHHHHHHHHHTCSCEEECGG--GT--------------TC-HHHHHHHHTTCSCEE--EE-------CTTCCHHHHHHH
T ss_pred             hhhcccccccccccceeccch--hc--------------cc-cHhhhhhhhccCcee--ec-------ccccchhHhhhh
Confidence            888899999999998887432  21              11 245566677888865  33       244678888888


Q ss_pred             HHHHHhCCCCEEEEccCcCcCCHHHH--HHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE--eeccc
Q 015894          254 SKQLYDMGCSEISLGDTIGVGTPGTV--IPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV--DSSVS  326 (398)
Q Consensus       254 a~~l~~~Gad~I~L~DT~G~~~P~~v--~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V--D~Sv~  326 (398)
                      ++.+...+.+.+-+==+..+=+|..-  -..+..+++.+|...+|+=-|.. |  ...+++|+..||++|  +.|+.
T Consensus       166 v~~~~~~~~~~~llhc~s~YPt~~~~~nL~~i~~lk~~f~~~~iG~SdH~~-g--~~~~~~Ava~GA~~IEKH~tl~  239 (280)
T d2zdra2         166 VEIIREAGVPYALLHCTNIYPTPYEDVRLGGMNDLSEAFPDAIIGLSDHTL-D--NYACLGAVALGGSILERHFTDR  239 (280)
T ss_dssp             HHHHHHHTCCEEEEECCCCSSCCGGGCCTTHHHHHHHHCTTSEEEEECCSS-S--SHHHHHHHHTTCCEEEEEBCSC
T ss_pred             hhhhhhccccceEEEeeccCccccccccccccceeeccccccceeecCccc-c--hhhHHHHHHCCCeEEEEEEEeC
Confidence            88888888876555333333333221  12488899999877789977754 3  457788999999999  66664

>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Escherichia coli [TaxId: 562]

Probab=88.48  E-value=2.9  Score=37.03  Aligned_cols=72  Identities=7%  Similarity=-0.025  Sum_probs=37.9

Q ss_pred             HHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhC-CCCE-EE-EccCcCcCCHHHHHHHHHHHHhhCCCC
Q 015894          217 DVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDM-GCSE-IS-LGDTIGVGTPGTVIPMLEAVLDAVPVD  293 (398)
Q Consensus       217 ~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~-Gad~-I~-L~DT~G~~~P~~v~~lv~~l~~~~p~~  293 (398)
                      +..+.|++.|..... +    ..|.-.+.+.+.+.+..+.+.+. +... ++ .++..|...+.++   +..+.+ .|++
T Consensus        87 ~~~~~a~~~Gad~~~-~----~pP~~~~~~~~~i~~~f~~v~~~~~~pi~iYn~P~~~g~~~~~e~---~~~L~~-~pnv  157 (292)
T d2a6na1          87 SLTQRFNDSGIVGCL-T----VTPYYNRPSQEGLYQHFKAIAEHTDLPQILYNVPSATGCDLLPET---VGRLAK-VKNI  157 (292)
T ss_dssp             HHHHTTTTSSCCEEE-E----ECCCSSCCCHHHHHHHHHHHHHTCSSCEEEEECHHHHSCCCCHHH---HHHHHT-STTE
T ss_pred             HHhccHHhcCCccee-c----cCCCCCCCCHHHHHHHHHHHhhccCCcEEEEEeccccCCccCHHH---HHHHhc-CCCE
Confidence            445667777776431 1    13554556677777777766654 3332 22 4566666444332   333432 5654


Q ss_pred             eEEEE
Q 015894          294 KLAVH  298 (398)
Q Consensus       294 ~l~~H  298 (398)
                       +++-
T Consensus       158 -~giK  161 (292)
T d2a6na1         158 -IGIK  161 (292)
T ss_dssp             -EEEE
T ss_pred             -EEEE
Confidence             5553

>d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: N-acetylneuraminate lyase
species: Haemophilus influenzae [TaxId: 727]

Probab=87.93  E-value=4  Score=36.01  Aligned_cols=36  Identities=14%  Similarity=0.013  Sum_probs=16.9

Q ss_pred             HHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHH
Q 015894          218 VALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLY  258 (398)
Q Consensus       218 ~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~  258 (398)
                      ..+.|++.|...-   +  +..|...+.+.+.+.+..+.+.
T Consensus        91 la~~a~~~Gad~i---~--~~pP~~~~~s~~~~~~~~~~v~  126 (293)
T d1f74a_          91 LGKYATELGYDCL---S--AVTPFYYKFSFPEIKHYYDTII  126 (293)
T ss_dssp             HHHHHHHHTCSEE---E--CCCCCSSCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCEe---e--ccCccccccchHHHHHHHhccc
Confidence            3455666666542   1  1134434445555555554443

>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=87.79  E-value=1.6  Score=38.92  Aligned_cols=83  Identities=23%  Similarity=0.294  Sum_probs=69.2

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcCc---CCHHHHHHHHHHHHhhCC-CCeEEEEe-CCccchHHHHHHHHHHhC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGV---GTPGTVIPMLEAVLDAVP-VDKLAVHF-HDTYGQALSNILASLQMG  317 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p-~~~l~~H~-Hnd~GlA~ANalaAl~aG  317 (398)
                      +..|.+-+.+.++.+.+.|++.|.++-|+|-   ++.++-.++++.+.+... .+++-+|+ +++.--++..+..|.++|
T Consensus        23 g~iD~~~l~~~i~~li~~Gv~Gi~v~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~~vi~g~~~~s~~~~i~~a~~a~~~G  102 (296)
T d1xxxa1          23 GSLDTATAARLANHLVDQGCDGLVVSGTTGESPTTTDGEKIELLRAVLEAVGDRARVIAGAGTYDTAHSIRLAKACAAEG  102 (296)
T ss_dssp             SCBCHHHHHHHHHHHHHTTCSEEEESSTTTTTTTSCHHHHHHHHHHHHHHHTTTSEEEEECCCSCHHHHHHHHHHHHHHT
T ss_pred             cCcCHHHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHHHHHHHHhccccceEeccccchhHHHHHHHHHHHHhc
Confidence            4689999999999999999999999999885   477888888888877664 46677765 778888999999999999


Q ss_pred             CCEEeecc
Q 015894          318 ISTVDSSV  325 (398)
Q Consensus       318 a~~VD~Sv  325 (398)
                      ++.+-...
T Consensus       103 ad~v~i~~  110 (296)
T d1xxxa1         103 AHGLLVVT  110 (296)
T ss_dssp             CSEEEEEC
T ss_pred             CCeEEEEe
Confidence            99875443

>d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: N-acetylneuraminate lyase
species: Escherichia coli [TaxId: 562]

Probab=87.77  E-value=1.2  Score=39.64  Aligned_cols=82  Identities=13%  Similarity=0.142  Sum_probs=69.7

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcCc---CCHHHHHHHHHHHHhhC-CCCeEEEEe-CCccchHHHHHHHHHHhC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGV---GTPGTVIPMLEAVLDAV-PVDKLAVHF-HDTYGQALSNILASLQMG  317 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~-p~~~l~~H~-Hnd~GlA~ANalaAl~aG  317 (398)
                      +..|.+-+.+.++.+.+.|++.|.+.-|+|-   +++++-.++++.+.+.. +.+++-+++ +++.--++..+..|-++|
T Consensus        18 g~iD~~~l~~~i~~l~~~Gv~gi~~~G~tGE~~~Ls~eEr~~l~~~~~~~~~~~~pvi~gv~~~s~~~~i~~a~~a~~~G   97 (295)
T d1hl2a_          18 QALDKASLRRLVQFNIQQGIDGLYVGGSTGEAFVQSLSEREQVLEIVAEEAKGKIKLIAHVGCVSTAESQQLAASAKRYG   97 (295)
T ss_dssp             SSBCHHHHHHHHHHHHHHTCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTTSEEEEECCCSSHHHHHHHHHHHHHHT
T ss_pred             cCcCHHHHHHHHHHHHHcCCCEEEECeEccchhhCCHHHHHHHHhhhHHhhccccceeeccccchhhHHHHHHHHHHhcC
Confidence            4688999999999999999999999999884   67888888888888776 346777776 888889999999999999


Q ss_pred             CCEEeec
Q 015894          318 ISTVDSS  324 (398)
Q Consensus       318 a~~VD~S  324 (398)
                      ++.+=..
T Consensus        98 ad~~~v~  104 (295)
T d1hl2a_          98 FDAVSAV  104 (295)
T ss_dssp             CSEEEEE
T ss_pred             Cceeeee
Confidence            9977654

>d2j78a1 c.1.8.4 (A:3-445) Beta-glucosidase A {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Family 1 of glycosyl hydrolase
domain: Beta-glucosidase A
species: Thermotoga maritima [TaxId: 2336]

Probab=86.28  E-value=0.91  Score=43.16  Aligned_cols=85  Identities=15%  Similarity=0.056  Sum_probs=64.8

Q ss_pred             HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCC--------CCCCCC
Q 015894          175 LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCP--------VEGMVP  246 (398)
Q Consensus       175 ~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~--------~~~r~~  246 (398)
                      .+|++++.+.|+...|+.++=|-++.+. .+.-.++.++.+.++++.++++|++..++|-. |+.|        ...+-.
T Consensus        60 ~eDi~l~~~lG~~~yRfsi~WsRi~P~g-~g~~n~~~~~~Y~~~i~~l~~~GI~P~VTL~H-f~~P~wl~~~gGw~~~~~  137 (443)
T d2j78a1          60 KEDIEIIEKLGVKAYRFSISWPRILPEG-TGRVNQKGLDFYNRIIDTLLEKGITPFVTIYH-WDLPFALQLKGGWANREI  137 (443)
T ss_dssp             HHHHHHHHHTTCCEEEEECCHHHHSTTS-SSCCCHHHHHHHHHHHHHHHHTTCEEEEEEES-SCCBHHHHTTTGGGSTTH
T ss_pred             HHHHHHHHHcCCCEEEccCCHHHceeCC-CCCcCHHHHHHHHHHHHHHHHcCCeeeEeecC-ccchhhhhhcCCccChHH
Confidence            4699999999999999998877766542 34456789999999999999999999988886 4444        223455


Q ss_pred             HHHHHHHHHHHHh-CC
Q 015894          247 PSKVAYVSKQLYD-MG  261 (398)
Q Consensus       247 ~~~l~~~a~~l~~-~G  261 (398)
                      ++++.++|+.+.+ +|
T Consensus       138 v~~F~~Ya~~v~~~~g  153 (443)
T d2j78a1         138 ADWFAEYSRVLFENFG  153 (443)
T ss_dssp             HHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            6777777776654 44

>d1tqja_ c.1.2.2 (A:) D-ribulose-5-phosphate 3-epimerase {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: D-ribulose-5-phosphate 3-epimerase
domain: D-ribulose-5-phosphate 3-epimerase
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=85.93  E-value=0.34  Score=42.49  Aligned_cols=186  Identities=17%  Similarity=0.153  Sum_probs=108.6

Q ss_pred             HHHHHHHHHhcCCCEEEE----ecCCCCCcccCCCCHHHHHHHHHhccCCcEEE--EeCCH-hhHHHHHHcCCCEEEEec
Q 015894          121 KVELIKLLVSSGLAVVEA----TSFVSPKWVPQLADAKDVMAAIQNVEGARFPV--LTPNL-KGFEAAVAAGAKEVAIFA  193 (398)
Q Consensus       121 k~~ia~~L~~aGv~~IEv----G~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~--l~~n~-~~ie~a~~~Gv~~v~i~~  193 (398)
                      -.+-++.|.+.|++.+-+    |.|+..-..    . ....+.++..++..+-+  |+.+. +-++...++|++.+.+.+
T Consensus        17 l~~~i~~l~~~g~d~iHiDImDG~Fvpn~t~----~-~~~~~~i~~~t~~~~dvHLMv~~P~~~i~~~~~~g~~~i~~H~   91 (221)
T d1tqja_          17 LGEEIKAVDEAGADWIHVDVMDGRFVPNITI----G-PLIVDAIRPLTKKTLDVHLMIVEPEKYVEDFAKAGADIISVHV   91 (221)
T ss_dssp             HHHHHHHHHHTTCSEEEEEEEBSSSSSCBCB----C-HHHHHHHGGGCCSEEEEEEESSSGGGTHHHHHHHTCSEEEEEC
T ss_pred             HHHHHHHHHHcCCCEEEEECccCCccCcccc----C-cHhHHhhhhccCcceeeeEEEeCHHHHHHHHhhccceEEEEee
Confidence            345677889999997766    666532111    2 24566777666665544  45554 457888999999998876


Q ss_pred             cCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEE----cc
Q 015894          194 SASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISL----GD  269 (398)
Q Consensus       194 ~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L----~D  269 (398)
                      -....              ..+.+.+.+.|+.|..+...+.     |.   ++.+.+..+++     -+|.|-+    +.
T Consensus        92 E~~~~--------------~~~~~~~~~i~~~g~~~Gial~-----p~---T~~~~l~~~l~-----~~d~vlvM~V~pG  144 (221)
T d1tqja_          92 EHNAS--------------PHLHRTLCQIRELGKKAGAVLN-----PS---TPLDFLEYVLP-----VCDLILIMSVNPG  144 (221)
T ss_dssp             STTTC--------------TTHHHHHHHHHHTTCEEEEEEC-----TT---CCGGGGTTTGG-----GCSEEEEESSCC-
T ss_pred             ccccC--------------hhhHHHHHHHHHCCCCEEEEec-----CC---CcHHHHHHHHh-----hhcEEEEEEecCC
Confidence            42110              1234667788999998875554     33   34555555443     2454443    12


Q ss_pred             CcCcCCHHH----HHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHH
Q 015894          270 TIGVGTPGT----VIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATED  345 (398)
Q Consensus       270 T~G~~~P~~----v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~  345 (398)
                      -.|...-..    +.++.+.+.++-++..|.+    |-|.-.-|+-...++||+.+=+   | +.      --++...++
T Consensus       145 ~~GQ~f~~~~~~ki~~l~~~~~~~~~~~~I~V----DGGIn~~~i~~l~~~Gad~~V~---G-S~------if~~~d~~~  210 (221)
T d1tqja_         145 FGGQSFIPEVLPKIRALRQMCDERGLDPWIEV----DGGLKPNNTWQVLEAGANAIVA---G-SA------VFNAPNYAE  210 (221)
T ss_dssp             ---CCCCGGGHHHHHHHHHHHHHHTCCCEEEE----ESSCCTTTTHHHHHHTCCEEEE---S-HH------HHTSSCHHH
T ss_pred             CCCcccchhhHHHHHHHHhhhhccccceEEEE----ECCcCHHHHHHHHHcCCCEEEE---C-hH------HhCCCCHHH
Confidence            223333333    4444444444456656666    6677777888999999997632   2 11      122445666


Q ss_pred             HHHHHHh
Q 015894          346 VVYMLNG  352 (398)
Q Consensus       346 vv~~L~~  352 (398)
                      .+..|+.
T Consensus       211 ~i~~lr~  217 (221)
T d1tqja_         211 AIAGVRN  217 (221)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            6666665

>d1vffa1 c.1.8.4 (A:1-423) Beta-glucosidase A {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Family 1 of glycosyl hydrolase
domain: Beta-glucosidase A
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=85.87  E-value=0.51  Score=44.99  Aligned_cols=92  Identities=12%  Similarity=0.078  Sum_probs=67.5

Q ss_pred             HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCC--------CCCCC
Q 015894          175 LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPV--------EGMVP  246 (398)
Q Consensus       175 ~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~--------~~r~~  246 (398)
                      .+||+.+.+.|++..|+.++=|-++.+.  +.=.++.++.+.++|+.+++.|++..++|.. |..|.        ..+..
T Consensus        53 ~eDi~ll~~lG~~~yRfSisWsRI~P~~--g~~n~~gl~~Y~~~i~~l~~~gI~P~VTL~H-~d~P~~l~~~gGw~~~~~  129 (423)
T d1vffa1          53 RDDIQLMTSLGYNAYRFSIEWSRLFPEE--NKFNEDAFMKYREIIDLLLTRGITPLVTLHH-FTSPLWFMKKGGFLREEN  129 (423)
T ss_dssp             HHHHHHHHHHTCCEEEEECCHHHHCSBT--TBCCHHHHHHHHHHHHHHHHTTCEEEEEEES-SCCBHHHHHTTGGGSGGG
T ss_pred             HHHHHHHHHhCCCEEEecCcHHHeecCC--CccChHHHHHHHHHHHHHHhcCCeeEEeecC-CcchHHHHhhhhccCHHH
Confidence            4699999999999999988877666542  4445789999999999999999999988875 44442        12345


Q ss_pred             HHHHHHHHHHHHhCC--CC-EEEEcc
Q 015894          247 PSKVAYVSKQLYDMG--CS-EISLGD  269 (398)
Q Consensus       247 ~~~l~~~a~~l~~~G--ad-~I~L~D  269 (398)
                      ++.+.+.++.+.+.+  ++ .+.+-.
T Consensus       130 v~~F~~Ya~~~~~~~d~Vk~W~T~NE  155 (423)
T d1vffa1         130 LKHWEKYIEKVAELLEKVKLVATFNE  155 (423)
T ss_dssp             HHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             HHHHHHHHHHHHHhhcccceeeccCC
Confidence            567777777776666  32 355544

>d1f6ya_ c.1.21.2 (A:) Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR {Moorella thermoacetica [TaxId: 1525]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Methyltetrahydrofolate-utiluzing methyltransferases
domain: Methyltetrahydrofolate: corrinoid/iron-sulfur protein methyltransferase MetR
species: Moorella thermoacetica [TaxId: 1525]

Probab=85.65  E-value=11  Score=33.00  Aligned_cols=147  Identities=12%  Similarity=0.035  Sum_probs=82.8

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHH-HHHHHH---HhccCCcEEEEeCCHhhHHHHHH--cCCCEE
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAK-DVMAAI---QNVEGARFPVLTPNLKGFEAAVA--AGAKEV  189 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~-~v~~~i---~~~~~~~l~~l~~n~~~ie~a~~--~Gv~~v  189 (398)
                      .+.+..++.++.+.+.|.+.|++|....+      .+.+ ++.+.+   ++..++.++.=+++.+-++.+++  .|++.|
T Consensus        22 ~d~~~~~~~A~~m~~~GAdiIDIg~g~~~------~~e~e~~~~vi~~l~~~~~vpiSIDT~~~~v~~aal~~~~Ga~iI   95 (262)
T d1f6ya_          22 RDPAPVQEWARRQEEGGARALDLNVGPAV------QDKVSAMEWLVEVTQEVSNLTLCLDSTNIKAIEAGLKKCKNRAMI   95 (262)
T ss_dssp             TCHHHHHHHHHHHHHHTCSEEEEBCC----------CHHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHHHHCSSCEEE
T ss_pred             CCHHHHHHHHHHHHHCCCCEEEeCCCCCC------CCHHHHHHHHHHHHHHhhcCCccccCCccHHHHHHHHhhccccee
Confidence            57788889999999999999999954332      2333 333333   34456665555677777888887  698877


Q ss_pred             EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH----HHHHHHhCCCC--
Q 015894          190 AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAY----VSKQLYDMGCS--  263 (398)
Q Consensus       190 ~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~----~a~~l~~~Gad--  263 (398)
                      .=.....                .........+++.|..+..  + . +.+....-++++...    ..+.+.++|+.  
T Consensus        96 NdIsg~~----------------~~~~~~~~~~~~~~~~v~~--~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~  155 (262)
T d1f6ya_          96 NSTNAER----------------EKVEKLFPLAVEHGAALIG--L-T-MNKTGIPKDSDTRLAFAMELVAAADEFGLPME  155 (262)
T ss_dssp             EEECSCH----------------HHHHHHHHHHHHTTCEEEE--E-S-CCSSCSCSSHHHHHHHHHHHHHHHHHHTCCGG
T ss_pred             echhccc----------------chHHHHHHHHhcCCceEEE--E-e-cCCcccccCHHHHHHHHHHHHHHHHHcCCCHH
Confidence            5433211                1112334556788876542  2 1 123333334544443    44555667863  


Q ss_pred             EEEEccC----cCc--CCHHHHHHHHHHHHhh
Q 015894          264 EISLGDT----IGV--GTPGTVIPMLEAVLDA  289 (398)
Q Consensus       264 ~I~L~DT----~G~--~~P~~v~~lv~~l~~~  289 (398)
                      .| +-|-    .+.  -++.+..++++.+++.
T Consensus       156 ~I-i~DPgi~~~~~~~~~~~~~le~l~~l~~~  186 (262)
T d1f6ya_         156 DL-YIDPLILPANVAQDHAPEVLKTLQQIKML  186 (262)
T ss_dssp             GE-EEECCCCCTTTCTTHHHHHHHHHHHHHTC
T ss_pred             Hh-hccceeeeccccchHHHHHHHHHHHHHHH
Confidence            34 3341    111  2345566777777753

>d1wcga1 c.1.8.4 (A:3-464) Thioglucosidase {Cabbage aphid (Brevicoryne brassicae) [TaxId: 69196]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Family 1 of glycosyl hydrolase
domain: Thioglucosidase
species: Cabbage aphid (Brevicoryne brassicae) [TaxId: 69196]

Probab=85.14  E-value=0.96  Score=43.34  Aligned_cols=94  Identities=10%  Similarity=0.007  Sum_probs=69.1

Q ss_pred             HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCC--------CCCCC
Q 015894          175 LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPV--------EGMVP  246 (398)
Q Consensus       175 ~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~--------~~r~~  246 (398)
                      .+|++.+.+.|+...|+.++=|-++.+-..+.=.++.++.+.++|+.+++.|++..++|-. |+.|.        ..+-.
T Consensus        60 ~eDi~l~~~lG~~~yRfSi~WsRI~P~G~~g~~n~~gl~~Y~~~i~~l~~~GI~P~vTL~H-fd~P~~l~~~GGW~~~~~  138 (462)
T d1wcga1          60 KEDVAIIKDLNLKFYRFSISWARIAPSGVMNSLEPKGIAYYNNLINELIKNDIIPLVTMYH-WDLPQYLQDLGGWVNPIM  138 (462)
T ss_dssp             HHHHHHHHHHTCSEEEEECCHHHHSTTSCTTSCCHHHHHHHHHHHHHHHHTTCEEEEEEES-SCCBHHHHHTTGGGSTTH
T ss_pred             HHHHHHHHHhCCCEEEeeCcHHHcccCCCCCCcCHHHHHHHHHHHHHHHhcCCeeEEEecc-ccchhhhhhcCCcccHHH
Confidence            4799999999999999999887776542234445789999999999999999999988876 44442        23445


Q ss_pred             HHHHHHHHHHHHh-CC--CC-EEEEcc
Q 015894          247 PSKVAYVSKQLYD-MG--CS-EISLGD  269 (398)
Q Consensus       247 ~~~l~~~a~~l~~-~G--ad-~I~L~D  269 (398)
                      ++.+.++|+.+.+ .|  ++ .+.|-.
T Consensus       139 v~~F~~Ya~~v~~~fgd~V~~W~T~NE  165 (462)
T d1wcga1         139 SDYFKEYARVLFTYFGDRVKWWITFNE  165 (462)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             HHHHHHHHHHHHHhccccchheeeecC
Confidence            5666777776654 34  44 566655

>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Staphylococcus aureus [TaxId: 1280]

Probab=85.14  E-value=3.3  Score=34.43  Aligned_cols=74  Identities=12%  Similarity=0.241  Sum_probs=58.4

Q ss_pred             HHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCC
Q 015894          252 YVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGG  330 (398)
Q Consensus       252 ~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGe  330 (398)
                      ...+...+.|++.|.+....+...-..+.+.++..++..+...+..+.++     ...++.+.+.|++.|..+..|.+.
T Consensus        79 ~~~~~~~~agad~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~t-----~~~a~~~~~~g~d~i~~~~~~~~~  152 (222)
T d1y0ea_          79 KEVDELIESQCEVIALDATLQQRPKETLDELVSYIRTHAPNVEIMADIAT-----VEEAKNAARLGFDYIGTTLHGYTS  152 (222)
T ss_dssp             HHHHHHHHHTCSEEEEECSCSCCSSSCHHHHHHHHHHHCTTSEEEEECSS-----HHHHHHHHHTTCSEEECTTTTSST
T ss_pred             HHHHhHHHcCCCEEEeeccccccccchHHHHHHHHHHhCCceEEeecCCC-----HHHHHHHHHcCCCeEEEeccCCcc
Confidence            34556677899999999988888888889999999988877666666655     467788999999999877666554

>d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: N-acetylneuraminate lyase
species: Haemophilus influenzae [TaxId: 727]

Probab=85.03  E-value=2.4  Score=37.61  Aligned_cols=79  Identities=10%  Similarity=0.105  Sum_probs=66.7

Q ss_pred             CCCCHHHHHHHHHHHHhC-CCCEEEEccCcCc---CCHHHHHHHHHHHHhhCC-CCeEEEEe-CCccchHHHHHHHHHHh
Q 015894          243 GMVPPSKVAYVSKQLYDM-GCSEISLGDTIGV---GTPGTVIPMLEAVLDAVP-VDKLAVHF-HDTYGQALSNILASLQM  316 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~-Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~p-~~~l~~H~-Hnd~GlA~ANalaAl~a  316 (398)
                      +..|.+-+.+.++.+.+. |++.|.++=|+|-   ++.++-.++++.+++..+ .++|-+|. +++..-++.-+..|.++
T Consensus        19 g~iD~~~l~~~i~~li~~~Gv~gi~v~GttGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~iela~~a~~~   98 (293)
T d1f74a_          19 GTINEKGLRQIIRHNIDKMKVDGLYVGGSTGENFMLSTEEKKEIFRIAKDEAKDQIALIAQVGSVNLKEAVELGKYATEL   98 (293)
T ss_dssp             SCBCHHHHHHHHHHHHHTSCCSEEEESSGGGTGGGSCHHHHHHHHHHHHHHHTTSSEEEEECCCSCHHHHHHHHHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHhCCCCEEEECccCcchhhCCHHHHhhhhheeeccccCccccccccccccHHHHHHHHHHHHHc
Confidence            468899999999987654 9999999988874   567888888888777664 56888888 89999999999999999


Q ss_pred             CCCEE
Q 015894          317 GISTV  321 (398)
Q Consensus       317 Ga~~V  321 (398)
                      |++.|
T Consensus        99 Gad~i  103 (293)
T d1f74a_          99 GYDCL  103 (293)
T ss_dssp             TCSEE
T ss_pred             CCCEe
Confidence            99977

>d1q6oa_ c.1.2.3 (A:) 3-keto-L-gulonate 6-phosphate decarboxylase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: Decarboxylase
domain: 3-keto-L-gulonate 6-phosphate decarboxylase
species: Escherichia coli [TaxId: 562]

Probab=85.03  E-value=6.3  Score=32.15  Aligned_cols=166  Identities=16%  Similarity=0.079  Sum_probs=93.5

Q ss_pred             CCHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHh-ccCCcEEEE---eCCHh-hHHHHHHcCCCEEE
Q 015894          116 VPAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQN-VEGARFPVL---TPNLK-GFEAAVAAGAKEVA  190 (398)
Q Consensus       116 ~~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~-~~~~~l~~l---~~n~~-~ie~a~~~Gv~~v~  190 (398)
                      .+.++-+++++.+.. +++.+++|++.....     . .+.++.+++ .++..+...   ..... -.+.+.++|+|.+.
T Consensus        11 ~~~~~~~~~~~~~~~-~vdiikig~~~~~~~-----G-~~~i~~l~~~~~~~~i~~d~k~~d~~~~~~~~~~~~gad~vt   83 (213)
T d1q6oa_          11 QTMDSAYETTRLIAE-EVDIIEVGTILCVGE-----G-VRAVRDLKALYPHKIVLADAKIADAGKILSRMCFEANADWVT   83 (213)
T ss_dssp             SSHHHHHHHHHHHGG-GCSEEEECHHHHHHH-----C-THHHHHHHHHCTTSEEEEEEEECSCHHHHHHHHHHTTCSEEE
T ss_pred             CCHHHHHHHHHhcCC-CccEEEeCeeccccC-----C-HHHHHHHHHhcccccceeEEeeccchHHHHHHHHHcCCCEEE
Confidence            457777888887654 999999997532111     1 133444443 345443321   12222 24566789999998


Q ss_pred             EeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEc--
Q 015894          191 IFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLG--  268 (398)
Q Consensus       191 i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~--  268 (398)
                      +.....+               +.+..+++.+++.|..+.+.++.        ..+.+.    ...+.+.+++.+.+.  
T Consensus        84 vh~~~g~---------------~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~----~~~~~~~~~~~~~~~~~  136 (213)
T d1q6oa_          84 VICCADI---------------NTAKGALDVAKEFNGDVQIELTG--------YWTWEQ----AQQWRDAGIGQVVYHRS  136 (213)
T ss_dssp             EETTSCH---------------HHHHHHHHHHHHTTCEEEEEECS--------CCCHHH----HHHHHHTTCCEEEEECC
T ss_pred             EeccCCc---------------hHHHHHHHHHHHcCCceecccCC--------CCCHHH----HHHHHHhHHHHHHHHHh
Confidence            8654322               33456678889999887643331        123433    344556787765431  


Q ss_pred             ---cCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEE
Q 015894          269 ---DTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTV  321 (398)
Q Consensus       269 ---DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~V  321 (398)
                         -..|...+....+.++..+..  ..++..    +-|.-..|.-.+.++|++++
T Consensus       137 ~~~g~~~~~~~~~~l~~i~~~~~~--~~~i~~----~gGi~~~~~~~~~~~Gad~i  186 (213)
T d1q6oa_         137 RDAQAAGVAWGEADITAIKRLSDM--GFKVTV----TGGLALEDLPLFKGIPIHVF  186 (213)
T ss_dssp             HHHHHTTCCCCHHHHHHHHHHHHT--TCEEEE----ESSCCGGGGGGGTTSCCSEE
T ss_pred             cccCcCCeeCCHHHHHHHHHhhcc--CceEec----CCCcCcCCHHHHHHcCCCEE
Confidence               122334444444445555442  223333    23555667778899999966

>d7reqa2 c.23.6.1 (A:561-728) Methylmalonyl-CoA mutase alpha subunit, C-terminal domain {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Cobalamin (vitamin B12)-binding domain
family: Cobalamin (vitamin B12)-binding domain
domain: Methylmalonyl-CoA mutase alpha subunit, C-terminal domain
species: Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]

Probab=84.85  E-value=3.4  Score=34.24  Aligned_cols=112  Identities=20%  Similarity=0.256  Sum_probs=73.0

Q ss_pred             HHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhccCCcEEEEeCCHhhHHHHHHcCCCEEEEeccCchHHH
Q 015894          121 KVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFS  200 (398)
Q Consensus       121 k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~~~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~  200 (398)
                      +.-++..|.+.|++++-.|.+.+         ++++                     ++.+.+.++|.|.+......   
T Consensus        54 ~~~va~~l~~~G~eVi~lg~~~~---------~e~i---------------------v~aa~~~~advI~iSs~~~~---  100 (168)
T d7reqa2          54 QKVIATAYADLGFDVDVGPLFQT---------PEET---------------------ARQAVEADVHVVGVSSLAGG---  100 (168)
T ss_dssp             HHHHHHHHHHTTCEEEECCTTBC---------HHHH---------------------HHHHHHHTCSEEEEEECSSC---
T ss_pred             HHHHHHHHHhCCcceecCCCcCc---------HHHH---------------------HHHHHccCCCEEEEecCccc---
Confidence            34567888999998888887654         2333                     35667788999998744322   


Q ss_pred             hhhcCCCHHHHHHHHHHHHHHHHhCCCc-EEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHH
Q 015894          201 KSNINCTIEDSLIRYRDVALAARELSIP-VRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTV  279 (398)
Q Consensus       201 ~~~~~~s~~~~l~~~~~~v~~ak~~G~~-v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v  279 (398)
                                .++.+.++++..++.|.. +.+  .  .|    +..+++.    .+.+.++|++.|+=+.|   -.++.+
T Consensus       101 ----------~~~~~~~l~~~L~~~g~~~v~V--i--vG----G~ip~~d----~~~l~~~Gv~~iF~pgt---~~~e~a  155 (168)
T d7reqa2         101 ----------HLTLVPALRKELDKLGRPDILI--T--VG----GVIPEQD----FDELRKDGAVEIYTPGT---VIPESA  155 (168)
T ss_dssp             ----------HHHHHHHHHHHHHHTTCTTSEE--E--EE----ESCCGGG----HHHHHHHTEEEEECTTC---CHHHHH
T ss_pred             ----------chHHHHHHHHHHHhcCCCCeEE--E--Ee----CCCCHHH----HHHHHhCCCCEEECcCC---CHHHHH
Confidence                      356778888999998853 322  1  12    2223333    24466799998875554   346778


Q ss_pred             HHHHHHHHhhC
Q 015894          280 IPMLEAVLDAV  290 (398)
Q Consensus       280 ~~lv~~l~~~~  290 (398)
                      .++++.+++++
T Consensus       156 ~~~~~~~~~~~  166 (168)
T d7reqa2         156 ISLVKKLRASL  166 (168)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            88888888753

>d1twda_ c.1.30.1 (A:) Copper homeostasis protein CutC {Shigella flexneri [TaxId: 623]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: CutC-like
family: CutC-like
domain: Copper homeostasis protein CutC
species: Shigella flexneri [TaxId: 623]

Probab=84.83  E-value=11  Score=33.02  Aligned_cols=135  Identities=19%  Similarity=0.143  Sum_probs=84.7

Q ss_pred             EEEeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHH-hCCCcEEEEEeeeecCCCCC--CC
Q 015894          169 PVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAAR-ELSIPVRGYLSCVVGCPVEG--MV  245 (398)
Q Consensus       169 ~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak-~~G~~v~~~l~~~fg~~~~~--r~  245 (398)
                      -+.+-+..++..|.+.|+++|-+....+.      =|.|+...      .++.++ ...++|.+-|     -|..+  -|
T Consensus         4 Evcv~s~~~a~~A~~~GAdRIELc~~l~~------GGlTPS~g------~i~~~~~~~~iPv~vMI-----RPR~GdF~Y   66 (247)
T d1twda_           4 EICCYSMECALTAQQNGADRVELCAAPKE------GGLTPSLG------VLKSVRQRVTIPVHPII-----RPRGGDFCY   66 (247)
T ss_dssp             EEEESSHHHHHHHHHTTCSEEEECBCGGG------TCBCCCHH------HHHHHHHHCCSCEEEBC-----CSSSSCSCC
T ss_pred             EEEeCCHHHHHHHHHcCCCEEEEcCCccc------CCCCCCHH------HHHHHHHhcCCCeEEEE-----ecCCCCCCC
Confidence            34556888999999999999999755332      14444322      223333 3578776322     23332  46


Q ss_pred             CHHHHHH---HHHHHHhCCCCEEEE--ccCcCcCCHHHHHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHH-HHhCCC
Q 015894          246 PPSKVAY---VSKQLYDMGCSEISL--GDTIGVGTPGTVIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILAS-LQMGIS  319 (398)
Q Consensus       246 ~~~~l~~---~a~~l~~~Gad~I~L--~DT~G~~~P~~v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaA-l~aGa~  319 (398)
                      +.+++..   -++.+.++|++.|.+  =|.-|...-..+.+++....    +.++.||-=-|.=.-.-.++.. ++.|++
T Consensus        67 s~~E~~~M~~di~~~k~~G~dGvV~G~L~~dg~iD~~~~~~L~~~a~----~l~vTFHRAfD~~~d~~~al~~Li~lG~~  142 (247)
T d1twda_          67 SDGEFAAILEDVRTVRELGFPGLVTGVLDVDGNVDMPRMEKIMAAAG----PLAVTFHRAFDMCANPLYTLNNLAELGIA  142 (247)
T ss_dssp             CHHHHHHHHHHHHHHHHTTCSEEEECCBCTTSSBCHHHHHHHHHHHT----TSEEEECGGGGGCSCHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHHHHHcCCCeEEEEEECCCCCccHHHHHHHHHHhc----ccCeeeehhhhhhCCHHHHHHHHHhcCCC
Confidence            6666555   456777899998765  35556666677777766643    3678888766654444444444 368999


Q ss_pred             EEeec
Q 015894          320 TVDSS  324 (398)
Q Consensus       320 ~VD~S  324 (398)
                      +|=||
T Consensus       143 rILTS  147 (247)
T d1twda_         143 RVLTS  147 (247)
T ss_dssp             EEEEC
T ss_pred             eEecc
Confidence            98776

>d1m3ua_ c.1.12.8 (A:) Ketopantoate hydroxymethyltransferase PanB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Phosphoenolpyruvate/pyruvate domain
family: Ketopantoate hydroxymethyltransferase PanB
domain: Ketopantoate hydroxymethyltransferase PanB
species: Escherichia coli [TaxId: 562]

Probab=84.69  E-value=12  Score=33.05  Aligned_cols=138  Identities=18%  Similarity=0.195  Sum_probs=84.6

Q ss_pred             HHHHHHHhcCCCEEEEecC------CCCCcccCCCCHHHHHHH---HH-hccCCcEEEEeC-----CHh----hHHHHHH
Q 015894          123 ELIKLLVSSGLAVVEATSF------VSPKWVPQLADAKDVMAA---IQ-NVEGARFPVLTP-----NLK----GFEAAVA  183 (398)
Q Consensus       123 ~ia~~L~~aGv~~IEvG~~------~~~~~~p~~~D~~~v~~~---i~-~~~~~~l~~l~~-----n~~----~ie~a~~  183 (398)
                      ..++.++++|||.|-+|--      ..+.-.|  -+.++++.-   ++ ..+++-+.+=.|     +.+    ...+..+
T Consensus        26 ~~A~~~~~agvDiiLVGDSlgmv~~G~~~T~~--vt~d~mi~H~~aV~rga~~~~vv~DmPf~sy~~~~~a~~~a~~l~~  103 (262)
T d1m3ua_          26 SFAKLFADEGLNVMLVGDSLGMTVQGHDSTLP--VTVADIAYHTAAVRRGAPNCLLLADLPFMAYATPEQAFENAATVMR  103 (262)
T ss_dssp             HHHHHHHHHTCCEEEECTTHHHHTTCCSSSTT--CCHHHHHHHHHHHHHHCTTSEEEEECCTTSSSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCCEEEEcCcHHhcccCCCCcce--echHhHHHHHHHHHhccccceeEeccccccchhhHHHHHHHHHHHh
Confidence            4688899999999999831      1111111  234444433   33 234443333222     222    2234568


Q ss_pred             cCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeee------cC-CCCCCC--CHHHHHHHH
Q 015894          184 AGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVV------GC-PVEGMV--PPSKVAYVS  254 (398)
Q Consensus       184 ~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~f------g~-~~~~r~--~~~~l~~~a  254 (398)
                      +|+|-|.+--+.                  ...++|++..+.|++|.++|-..=      |. -.-+++  +...+.+.+
T Consensus       104 ~GAdaVKlEgg~------------------~~~~~I~~L~~~gIPV~gHiGL~PQ~~~~~GG~r~qGkt~~ea~~l~~~a  165 (262)
T d1m3ua_         104 AGANMVKIEGGE------------------WLVETVQMLTERAVPVCGHLGLTPQSVNIFGGYKVQGRGDEAGDQLLSDA  165 (262)
T ss_dssp             TTCSEEECCCSG------------------GGHHHHHHHHHTTCCEEEEEESCGGGHHHHTSSCCCCCSHHHHHHHHHHH
T ss_pred             cCCcEEEeccch------------------hHHHHHHHHHHcCCeEEeehhhchhhhhhcCCccccCccHHHHHHHHHHH
Confidence            999999886441                  123667888899999998887530      10 011333  224677788


Q ss_pred             HHHHhCCCCEEEEccCcCcCCHHHHHHHHHH
Q 015894          255 KQLYDMGCSEISLGDTIGVGTPGTVIPMLEA  285 (398)
Q Consensus       255 ~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~  285 (398)
                      +.+.++||..|.|-     +.|.++.+.|..
T Consensus       166 ~~le~AGaf~ivlE-----~vp~~va~~It~  191 (262)
T d1m3ua_         166 LALEAAGAQLLVLE-----CVPVELAKRITE  191 (262)
T ss_dssp             HHHHHHTCCEEEEE-----SCCHHHHHHHHH
T ss_pred             HHHHhhcceEEEEe-----cccHHHHHHHHh
Confidence            89999999999885     478888887765

>d1sfla_ c.1.10.1 (A:) Type I 3-dehydroquinate dehydratase {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Type I 3-dehydroquinate dehydratase
species: Staphylococcus aureus [TaxId: 1280]

Probab=84.46  E-value=11  Score=32.28  Aligned_cols=187  Identities=13%  Similarity=0.111  Sum_probs=113.8

Q ss_pred             cCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc----cCCcEEEEeCCH-h---------h----HHHHHH-cCCCEEEE
Q 015894          131 SGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV----EGARFPVLTPNL-K---------G----FEAAVA-AGAKEVAI  191 (398)
Q Consensus       131 aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~----~~~~l~~l~~n~-~---------~----ie~a~~-~Gv~~v~i  191 (398)
                      -|+|.||+-...-.+     .+.+.+.+.+..+    .+.++..-+|.. +         +    ++.+++ .|++.|.+
T Consensus        27 ~~~D~vElRlD~l~~-----~~~~~v~~~~~~l~~~~~~~PiI~T~R~~~eGG~~~~~~~~~~~ll~~~~~~~~~d~iDi  101 (236)
T d1sfla_          27 DAIDVLELRIDQFEN-----VTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDI  101 (236)
T ss_dssp             TTCSEEEEECTTSTT-----CCHHHHHHHHHHHC---CCSEEEEECCBGGGTSCBCCCHHHHHHHHHHGGGCTTCCEEEE
T ss_pred             cCCCEEEEEeccccC-----CCHHHHHHHHHHHHhcCCCCcEEEEEeCHHHCCCCCCCHHHHHHHHHHHHHhcCCchhhh
Confidence            489999998643221     1445555555433    234444444532 1         1    233344 36899999


Q ss_pred             eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCc
Q 015894          192 FASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTI  271 (398)
Q Consensus       192 ~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~  271 (398)
                      -....+             .++...+.++.+++.|..+-  +++=.   +....+.+.+.++.+++.+.|+|.+-|+=+ 
T Consensus       102 E~~~~~-------------~~~~~~~~~~~~~~~~~~vI--~S~H~---f~~TP~~~el~~~~~~~~~~gaDivKia~~-  162 (236)
T d1sfla_         102 EWQADI-------------DIEKHQRIITHLQQYNKEVI--ISHHN---FESTPPLDELQFIFFKMQKFNPEYVKLAVM-  162 (236)
T ss_dssp             ECCTTS-------------CHHHHHHHHHHHHHTTCEEE--EEEEE---SSCCCCHHHHHHHHHHHHTTCCSEEEEEEC-
T ss_pred             hhcchh-------------hHHHHHHHHHHhhcCCCEEE--EEEcC---CCCCCCHHHHHHHHHHHHHhCCCeEEEEEe-
Confidence            655322             23444567788999998875  33210   122234589999999999999999888733 


Q ss_pred             CcCCHHHHHHHHHHHHhh--CCCCeEEEEeCCccchHHHHHHHHHHhCCCEEeeccccCCCCCCCCCCCCCccHHHHHHH
Q 015894          272 GVGTPGTVIPMLEAVLDA--VPVDKLAVHFHDTYGQALSNILASLQMGISTVDSSVSGLGGCPYAKGASGNVATEDVVYM  349 (398)
Q Consensus       272 G~~~P~~v~~lv~~l~~~--~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD~Sv~GlGecp~a~graGNa~lE~vv~~  349 (398)
                       .-++.++.++++...+.  .+..|+-.-+=-  -++...=+.+-..|...+=+++   |+ |-   ..|+.+++++-..
T Consensus       163 -~~~~~D~~~ll~~~~~~~~~~~~pii~~~MG--~~G~~sRi~~~~~GS~~tya~~---~~-~s---APGQ~~~~~lr~~  232 (236)
T d1sfla_         163 -PHNKNDVLNLLQAMSTFSDTMDCKVVGISMS--KLGLISRTAQGVFGGALTYGCI---GE-PQ---APGQIDVTDLKAQ  232 (236)
T ss_dssp             -CSSHHHHHHHHHHHHHHHHHCSSEEEEEECT--GGGHHHHHTGGGGTBCEEEEBS---SC-CS---STTCCBHHHHHHH
T ss_pred             -cCCHHHHHHHHHHHHHHhhccCCCEEEEecC--CcchHHHHHHHHhCCceEEccC---CC-CC---CCCCcCHHHHHHH
Confidence             34678888887765432  233455432221  2245666777788888888876   33 33   4569999998776


Q ss_pred             HH
Q 015894          350 LN  351 (398)
Q Consensus       350 L~  351 (398)
                      |+
T Consensus       233 l~  234 (236)
T d1sfla_         233 VT  234 (236)
T ss_dssp             HT
T ss_pred             Hh
Confidence            64

>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Escherichia coli [TaxId: 562]

Probab=83.93  E-value=1.4  Score=39.28  Aligned_cols=99  Identities=14%  Similarity=0.008  Sum_probs=76.2

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcCc---CCHHHHHHHHHHHHhhC-CCCeEEEEe-CCccchHHHHHHHHHHhC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGV---GTPGTVIPMLEAVLDAV-PVDKLAVHF-HDTYGQALSNILASLQMG  317 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~-p~~~l~~H~-Hnd~GlA~ANalaAl~aG  317 (398)
                      +..|.+-+.+.++.+.+.|++.|.++-|+|-   ++.++-.++++.+.+.. +.+++-+|. +++.-.++..+..|.++|
T Consensus        17 ~~iD~~~~~~~i~~l~~~Gv~Gl~~~GstGE~~~Ls~~Er~~~~~~~~~~~~~~~~vi~g~~~~s~~~~i~~~~~a~~~G   96 (292)
T d2a6na1          17 GNVCRASLKKLIDYHVASGTSAIVSVGTTGESATLNHDEHADVVMMTLDLADGRIPVIAGTGANATAEAISLTQRFNDSG   96 (292)
T ss_dssp             SSBCHHHHHHHHHHHHHHTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSSHHHHHHHHHTTTTSS
T ss_pred             CCCCHHHHHHHHHHHHHcCCCEEEECeeccchhhCCHHHHHHHhhhhhhhccccceeEeecccchHHHHHHHhccHHhcC
Confidence            4688999999999999999999999999995   55677777787777665 446788887 888888999999999999


Q ss_pred             CCEEeeccccCCCCCCCCCCCCCccHHHHHHHHH
Q 015894          318 ISTVDSSVSGLGGCPYAKGASGNVATEDVVYMLN  351 (398)
Q Consensus       318 a~~VD~Sv~GlGecp~a~graGNa~lE~vv~~L~  351 (398)
                      ++.+=..- ..-.         .++-++++.+++
T Consensus        97 ad~~~~~p-P~~~---------~~~~~~i~~~f~  120 (292)
T d2a6na1          97 IVGCLTVT-PYYN---------RPSQEGLYQHFK  120 (292)
T ss_dssp             CCEEEEEC-CCSS---------CCCHHHHHHHHH
T ss_pred             CcceeccC-CCCC---------CCCHHHHHHHHH
Confidence            99765543 2211         235567777665

>d1e4ia_ c.1.8.4 (A:) Beta-glucosidase A {Bacillus polymyxa [TaxId: 1406]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Family 1 of glycosyl hydrolase
domain: Beta-glucosidase A
species: Bacillus polymyxa [TaxId: 1406]

Probab=83.69  E-value=1.1  Score=42.68  Aligned_cols=93  Identities=10%  Similarity=0.029  Sum_probs=67.5

Q ss_pred             HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCC--------CCCCC
Q 015894          175 LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPV--------EGMVP  246 (398)
Q Consensus       175 ~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~--------~~r~~  246 (398)
                      .+|++++.+.|++..|+.++=|-++.+. -+.-.++.++.+.++|+.+++.|+++.++|.. |+.|.        ..+-.
T Consensus        61 ~eDi~l~~~lG~~~yRfSi~WsRI~P~g-~g~~n~~gl~~Y~~~i~~l~~~gI~P~VTL~H-~dlP~~l~~~gGw~n~~~  138 (447)
T d1e4ia_          61 EEDIRLMKELGIRTYRFSVSWPRIFPNG-DGEVNQKGLDYYHRVVDLLNDNGIEPFCTLYH-WDLPQALQDAGGWGNRRT  138 (447)
T ss_dssp             HHHHHHHHHHTCSEEEEECCHHHHSTTS-SSCCCHHHHHHHHHHHHHHHHTTCEEEEEEES-SCCBHHHHHTTTTSSTHH
T ss_pred             HHHHHHHHHhCCCEEEccCCHHHcccCC-CCCcCHHHHHHHHHHHHHHHHhCCeEEEEeec-cccchhhhcCCCCCCHHH
Confidence            4699999999999999988876665432 35556789999999999999999999988887 55652        22334


Q ss_pred             HHHHHHHHHHHHh-CC--CC-EEEEcc
Q 015894          247 PSKVAYVSKQLYD-MG--CS-EISLGD  269 (398)
Q Consensus       247 ~~~l~~~a~~l~~-~G--ad-~I~L~D  269 (398)
                      ++++.++|+.+.+ .|  ++ .+.|-.
T Consensus       139 ~~~F~~Ya~~v~~~fgdrV~~W~TiNE  165 (447)
T d1e4ia_         139 IQAFVQFAETMFREFHGKIQHWLTFNE  165 (447)
T ss_dssp             HHHHHHHHHHHHHHTBTTBCEEEEEEC
T ss_pred             HHHHHHHHHHHHHHhCCccceEEecCC
Confidence            4566666665554 35  44 455554

>d3bofa1 c.1.21.2 (A:301-560) Cobalamin-dependent methionine synthase MetH, C-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Dihydropteroate synthetase-like
family: Methyltetrahydrofolate-utiluzing methyltransferases
domain: Cobalamin-dependent methionine synthase MetH, C-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=83.58  E-value=5  Score=35.60  Aligned_cols=126  Identities=13%  Similarity=0.061  Sum_probs=74.1

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHH---HHHHHhccCCcEEEEeCCHhhHHHHHHc--CCCEEEE
Q 015894          117 PAVVKVELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDV---MAAIQNVEGARFPVLTPNLKGFEAAVAA--GAKEVAI  191 (398)
Q Consensus       117 ~~~~k~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v---~~~i~~~~~~~l~~l~~n~~~ie~a~~~--Gv~~v~i  191 (398)
                      +.+..++.|+.+.+.|.++|++......     -.+.+.+   .+.++...++.++.=+.+.+-++++++.  |...|.=
T Consensus        38 d~d~~~~~A~~qv~~GA~iLDIn~~~~~-----~~e~~~m~~li~~l~~~~d~PlsIDT~~~~v~eaaLk~~~G~~iINs  112 (260)
T d3bofa1          38 NEEIVIKEAKTQVEKGAEVLDVNFGIES-----QIDVRYVEKIVQTLPYVSNVPLSLDIQNVDLTERALRAYPGRSLFNS  112 (260)
T ss_dssp             CSHHHHHHHHHHHHTTCSEEEEECSSGG-----GSCHHHHHHHHHHHHHHTCSCEEEECCCHHHHHHHHHHCSSCCEEEE
T ss_pred             CHHHHHHHHHHHHHcCCCEEEeecCCch-----hhhHHHHHHHHHHHHhcCCCCccccCCCHHHHHHHHHHhcCcceEee
Confidence            4467788999999999999999764321     1233333   3333444455555555678888999887  8876652


Q ss_pred             eccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHH----HHHHHHhCCC-CEEE
Q 015894          192 FASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAY----VSKQLYDMGC-SEIS  266 (398)
Q Consensus       192 ~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~----~a~~l~~~Ga-d~I~  266 (398)
                      . +.-+               ++...++..++++|..+.+  + ... + ...-+.++-.+    +.+.+..+|. +.|.
T Consensus       113 i-s~e~---------------~~~~~~~~l~~~yga~vI~--l-~~d-~-g~p~~~~er~~~~~~~~~~~~~~g~~e~ii  171 (260)
T d3bofa1         113 A-KVDE---------------EELEMKINLLKKYGGTLIV--L-LMG-K-DVPKSFEERKEYFEKALKILERHDFSDRVI  171 (260)
T ss_dssp             E-ESCH---------------HHHHHHHHHHHHHCCEEEE--E-SCS-S-SCCCSHHHHHHHHHHHHHHHHHTTCGGGEE
T ss_pred             c-cccc---------------chHHHHHHHHHhcCCCEEE--E-ecC-C-cccccHHHHHHHHHHHHHHHHhcCCcHhhe
Confidence            2 2111               2344567889999998753  2 121 1 12234443333    3444455665 4566


Q ss_pred             Ecc
Q 015894          267 LGD  269 (398)
Q Consensus       267 L~D  269 (398)
                      + |
T Consensus       172 ~-D  173 (260)
T d3bofa1         172 F-D  173 (260)
T ss_dssp             E-E
T ss_pred             e-c
Confidence            6 6

>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Dihydrodipicolinate synthase
species: Bacillus anthracis [TaxId: 1392]

Probab=83.40  E-value=3.5  Score=36.33  Aligned_cols=82  Identities=17%  Similarity=0.185  Sum_probs=67.7

Q ss_pred             CCCCHHHHHHHHHHHHhCCCCEEEEccCcCc---CCHHHHHHHHHHHHhhC-CCCeEEEE-eCCccchHHHHHHHHHHhC
Q 015894          243 GMVPPSKVAYVSKQLYDMGCSEISLGDTIGV---GTPGTVIPMLEAVLDAV-PVDKLAVH-FHDTYGQALSNILASLQMG  317 (398)
Q Consensus       243 ~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~---~~P~~v~~lv~~l~~~~-p~~~l~~H-~Hnd~GlA~ANalaAl~aG  317 (398)
                      +..|.+.+.+.++.+.+.|++.|.+.-|+|-   +++++-.++++.+.+.. +.+++-++ .+++..-++..+..|.++|
T Consensus        19 ~~iD~~~~~~~i~~l~~~Gv~gl~~~G~tGE~~~Ls~~Er~~l~~~~~~~~~~~~~vi~gv~~~s~~~~i~~a~~a~~~G   98 (292)
T d1xkya1          19 GNIDFAKTTKLVNYLIDNGTTAIVVGGTTGESPTLTSEEKVALYRHVVSVVDKRVPVIAGTGSNNTHASIDLTKKATEVG   98 (292)
T ss_dssp             SSBCHHHHHHHHHHHHHTTCCEEEESSTTTTGGGSCHHHHHHHHHHHHHHHTTSSCEEEECCCSCHHHHHHHHHHHHHTT
T ss_pred             cCcCHHHHHHHHHHHHHCCCCEEEECeEccchhhCCHHHHHHHHHHHHHHhCCCceEEEecCcccHHHHHHHHHHHHHcC
Confidence            4689999999999999999999999999885   56788888888888765 34566665 4566777889999999999


Q ss_pred             CCEEeec
Q 015894          318 ISTVDSS  324 (398)
Q Consensus       318 a~~VD~S  324 (398)
                      |+.|-..
T Consensus        99 ad~ilv~  105 (292)
T d1xkya1          99 VDAVMLV  105 (292)
T ss_dssp             CSEEEEE
T ss_pred             CCEEEEC
Confidence            9988765

>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Homocysteine S-methyltransferase
family: Homocysteine S-methyltransferase
domain: Betaine-homocysteine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.38  E-value=16  Score=33.09  Aligned_cols=143  Identities=11%  Similarity=0.153  Sum_probs=78.9

Q ss_pred             HHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHHhc--cCCcEE-EEe-C-C--------HhhHHHHHHcCCCEE
Q 015894          123 ELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQNV--EGARFP-VLT-P-N--------LKGFEAAVAAGAKEV  189 (398)
Q Consensus       123 ~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~~~--~~~~l~-~l~-~-n--------~~~ie~a~~~Gv~~v  189 (398)
                      +.++.|.+.|+|.|=+=.+         .+.+|...++..+  .+..+. .++ . +        .+.+..+.+.+++.+
T Consensus       133 ~q~~~l~~~gvD~il~ETm---------~~~~Ea~~a~~a~~~~~~Pv~~s~t~~~~g~l~~g~~~e~~~~~~~~~~~~~  203 (361)
T d1lt7a_         133 QQLEVFMKKNVDFLIAEYF---------EHVEEAVWAVETLIASGKPVAATMAIGPEGDLHGVPPGEAAVRLVKAGASII  203 (361)
T ss_dssp             HHHHHHHHTTCSEEEECCC---------SCHHHHHHHHHHHGGGSSCEEEEECCBTTBSTTSCCHHHHHHHHHHTTCSEE
T ss_pred             HHHHHHHhhccchhhhHHH---------hhHHHHHHHHHHHhhccceEEEEEEEcCCCcccCCCcHHHHHHHHhcccchh
Confidence            4677788999998776432         2344554444422  222222 222 1 1        122345567899998


Q ss_pred             EEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCc--EEEEEeeeecCCCCC-----------------CCCHHHH
Q 015894          190 AIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIP--VRGYLSCVVGCPVEG-----------------MVPPSKV  250 (398)
Q Consensus       190 ~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~--v~~~l~~~fg~~~~~-----------------r~~~~~l  250 (398)
                      .+-+...+..           ....+..+.+.....+..  +.++-. .+..|+.+                 ..+++++
T Consensus       204 g~nc~~~p~~-----------~~~~i~~l~~~~~~~~~~~~~~~~p~-~~~~pn~~~~~~~~~p~~~~~~~~~~~~~~~~  271 (361)
T d1lt7a_         204 GVNCHFDPTI-----------SLKTVKLMKEGLEAAQLKAHLMSQPL-AYHTPDANKQGFIDLPEFPFGLEPRVATRWDI  271 (361)
T ss_dssp             EEESSSCHHH-----------HHHHHHHHHHHHHHTTCCCEEEEECC-SBCCTTCCTTCGGGSTTTTTSCGGGBCCHHHH
T ss_pred             hhccccchHh-----------HHHHHHHHHHhhhhhcccceeeeccc-cccCCCCCccccCCCCCCcCCcccccCCHHHH
Confidence            8877655432           222222222333333433  222111 11112221                 2456788


Q ss_pred             HHHHHHHHhCCCCEEE-EccCcCcCCHHHHHHHHHHHHhhC
Q 015894          251 AYVSKQLYDMGCSEIS-LGDTIGVGTPGTVIPMLEAVLDAV  290 (398)
Q Consensus       251 ~~~a~~l~~~Gad~I~-L~DT~G~~~P~~v~~lv~~l~~~~  290 (398)
                      .++++.+.+.|+..|. -|=    .+|++++.+.+.|+..-
T Consensus       272 ~~~a~~~~~~Ga~iIGGCCG----ttP~HI~~la~~l~~~~  308 (361)
T d1lt7a_         272 QKYAREAYNLGVRYIGGCCG----FEPYHIRAIAEELAPER  308 (361)
T ss_dssp             HHHHHHHHHHTCCEECCCTT----CCHHHHHHHHHHTHHHH
T ss_pred             HHHHHHHHHCCCcEEEECCC----CCHHHHHHHHHHHhhhc
Confidence            9999999999998863 222    37999999999997653

>d1lt7a_ c.1.26.1 (A:) Betaine-homocysteine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Homocysteine S-methyltransferase
family: Homocysteine S-methyltransferase
domain: Betaine-homocysteine S-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.37  E-value=12  Score=33.94  Aligned_cols=150  Identities=13%  Similarity=0.090  Sum_probs=78.2

Q ss_pred             CHHHHHHHHHHHHhcCCCEEEEecCC-CCCcccCCC--CHH-----HHHH----HHHhc---cCCcEE-EEeCC------
Q 015894          117 PAVVKVELIKLLVSSGLAVVEATSFV-SPKWVPQLA--DAK-----DVMA----AIQNV---EGARFP-VLTPN------  174 (398)
Q Consensus       117 ~~~~k~~ia~~L~~aGv~~IEvG~~~-~~~~~p~~~--D~~-----~v~~----~i~~~---~~~~l~-~l~~n------  174 (398)
                      .++...+|=+...++|-+.|+.-.|. ++.......  +.+     ++..    ..++.   .++.+. .+.+.      
T Consensus        42 ~Pe~V~~iH~~yi~AGAdiI~TNTy~a~~~~l~~~g~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~VaGsigp~~~~~~~  121 (361)
T d1lt7a_          42 HPEAVRQLHREFLRAGSNVMQTFTFYASEDKLENRGNYVLEKISGQEVNEAAADIARQVADEGDALVAGGVSQTPSYLSA  121 (361)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEEC-----------------------CHHHHHHHHHHHHHTTTCEEEEEECCCHHHHTT
T ss_pred             ChHHHHHHHHHHHHhCCCEEEeCCCcCCHHHHHhhchhhHHHHHHHHHHHHHHHHHhhccccccceeeccccCCcccccc
Confidence            35666778788899999999986553 332221110  111     1111    11221   123332 23331      


Q ss_pred             --Hh--------hHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCC
Q 015894          175 --LK--------GFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGM  244 (398)
Q Consensus       175 --~~--------~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r  244 (398)
                        ..        .++..++.|+|.|.+-.- ++              +..++.+++.+++.|++|-+.++  +.  +.++
T Consensus       122 ~~~~~~~~~~~~q~~~l~~~gvD~il~ETm-~~--------------~~Ea~~a~~a~~~~~~Pv~~s~t--~~--~~g~  182 (361)
T d1lt7a_         122 KSETEVKKVFLQQLEVFMKKNVDFLIAEYF-EH--------------VEEAVWAVETLIASGKPVAATMA--IG--PEGD  182 (361)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCSEEEECCC-SC--------------HHHHHHHHHHHGGGSSCEEEEEC--CB--TTBS
T ss_pred             cchHHHHHHHHHHHHHHHhhccchhhhHHH-hh--------------HHHHHHHHHHHhhccceEEEEEE--Ec--CCCc
Confidence              11        234557899998887533 22              24455677888899999875444  32  2222


Q ss_pred             CCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHHHHHHHHHHh
Q 015894          245 VPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTVIPMLEAVLD  288 (398)
Q Consensus       245 ~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v~~lv~~l~~  288 (398)
                      ..-....+.+..+.+.+++.+.+.-+.|   |..+...++.+++
T Consensus       183 l~~g~~~e~~~~~~~~~~~~~g~nc~~~---p~~~~~~i~~l~~  223 (361)
T d1lt7a_         183 LHGVPPGEAAVRLVKAGASIIGVNCHFD---PTISLKTVKLMKE  223 (361)
T ss_dssp             TTSCCHHHHHHHHHHTTCSEEEEESSSC---HHHHHHHHHHHHH
T ss_pred             ccCCCcHHHHHHHHhcccchhhhccccc---hHhHHHHHHHHHH
Confidence            1111112334456678998887766544   7777777777765

>d1ug6a_ c.1.8.4 (A:) Beta-glucosidase A {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Family 1 of glycosyl hydrolase
domain: Beta-glucosidase A
species: Thermus thermophilus [TaxId: 274]

Probab=82.64  E-value=1  Score=42.74  Aligned_cols=93  Identities=10%  Similarity=0.009  Sum_probs=64.5

Q ss_pred             HhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCC-----CCCCC---
Q 015894          175 LKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPV-----EGMVP---  246 (398)
Q Consensus       175 ~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~-----~~r~~---  246 (398)
                      .+|++.+.+.|+...|+.++=|-++.+- -+.-.++.++.+.++++.+++.|+++.++|-. |+.|.     .+-.+   
T Consensus        57 ~eDi~ll~~lG~~~yRfsi~WsRI~P~g-~g~~n~~gl~~Y~~~i~~l~~~GI~P~VTL~H-fd~P~~l~~~gGw~~~~~  134 (426)
T d1ug6a_          57 EEDIALMQSLGVRAYRFSVAWPRILPEG-RGRINPKGLAFYDRLVDRLLASGITPFLTLYH-WDLPLALEERGGWRSRET  134 (426)
T ss_dssp             HHHHHHHHHHTCCEEEEECCHHHHSTTS-SSCCCHHHHHHHHHHHHHHHHTTCEEEEEEES-SCCBHHHHTTTGGGSHHH
T ss_pred             HHHHHHHHHcCCCEEEccCCHHHcccCC-CCCcChHHHHHHHHHHHHHHHcCCeEEEEecc-cccchhhhccCccCCHHH
Confidence            4699999999999999998877665431 23445678999999999999999999988886 55552     22233   


Q ss_pred             HHHHHHHHHHHH-hCC--CC-EEEEcc
Q 015894          247 PSKVAYVSKQLY-DMG--CS-EISLGD  269 (398)
Q Consensus       247 ~~~l~~~a~~l~-~~G--ad-~I~L~D  269 (398)
                      ++.+.++++.+. ..|  ++ .+.|-.
T Consensus       135 ~~~F~~Ya~~v~~~fgd~V~~w~TiNE  161 (426)
T d1ug6a_         135 AFAFAEYAEAVARALADRVPFFATLNE  161 (426)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             HHHHHHHHHHHHHHhCcccceEEEecC
Confidence            345555565544 344  44 455443

>d1yxya1 c.1.2.5 (A:4-233) Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE {Streptococcus pyogenes [TaxId: 1314]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Ribulose-phoshate binding barrel
family: NanE-like
domain: Putative N-acetylmannosamine-6-phosphate 2-epimerase NanE
species: Streptococcus pyogenes [TaxId: 1314]

Probab=82.38  E-value=12  Score=30.97  Aligned_cols=140  Identities=14%  Similarity=0.119  Sum_probs=81.1

Q ss_pred             HHHHHHHHhcCCCEEEEecCCCCCcccCCCCHHHHHHHHH-hccCCcEEEEeCCHhhHHHHHHcCCCEEEEeccCchHHH
Q 015894          122 VELIKLLVSSGLAVVEATSFVSPKWVPQLADAKDVMAAIQ-NVEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFS  200 (398)
Q Consensus       122 ~~ia~~L~~aGv~~IEvG~~~~~~~~p~~~D~~~v~~~i~-~~~~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~  200 (398)
                      .+-...+..+|++.+.+......  .+...+.++.++.++ ..++..+..-+.+.++.+.+.++|++.|.+....-.   
T Consensus        88 ~~~~~~~~~~gad~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~v~t~~~a~~a~~~Gad~i~~~~~~~~---  162 (230)
T d1yxya1          88 MTEVDQLAALNIAVIAMDCTKRD--RHDGLDIASFIRQVKEKYPNQLLMADISTFDEGLVAHQAGIDFVGTTLSGYT---  162 (230)
T ss_dssp             HHHHHHHHTTTCSEEEEECCSSC--CTTCCCHHHHHHHHHHHCTTCEEEEECSSHHHHHHHHHTTCSEEECTTTTSS---
T ss_pred             HHHHHHHHhcCCCEEEEeccccc--ccchhhHHHHHHHHHhcCCCceEecCCCCHHHHHHHHhcCCCEEEeeccccc---
Confidence            45566788899999998764321  122344555555554 335555555567889999999999998865322110   


Q ss_pred             hhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCHHHH-
Q 015894          201 KSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTPGTV-  279 (398)
Q Consensus       201 ~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P~~v-  279 (398)
                        ..........   ....+.++..+++|.+         ..+-.+++.+.+    +.++|||.|.+.-  .+..|..+ 
T Consensus       163 --~~~~~~~~~~---~~~~~~~~~~~ipvia---------~GGI~t~~d~~~----al~~GAd~V~vGs--Ai~~p~~i~  222 (230)
T d1yxya1         163 --PYSRQEAGPD---VALIEALCKAGIAVIA---------EGKIHSPEEAKK----INDLGVAGIVVGG--AITRPKEIA  222 (230)
T ss_dssp             --TTSCCSSSCC---HHHHHHHHHTTCCEEE---------ESCCCSHHHHHH----HHTTCCSEEEECH--HHHCHHHHH
T ss_pred             --ccccccchHH---HHHHHHHhcCCCeEEE---------eCCCCCHHHHHH----HHHcCCCEEEECh--hhcCHHHHH
Confidence              0100000000   1233444556777642         134456766544    4469999999885  35688875 


Q ss_pred             HHHHHHH
Q 015894          280 IPMLEAV  286 (398)
Q Consensus       280 ~~lv~~l  286 (398)
                      +.+++.+
T Consensus       223 ~~~~~~~  229 (230)
T d1yxya1         223 ERFIEAL  229 (230)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHh
Confidence            4445443

>d1qpoa1 c.1.17.1 (A:117-285) Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Nicotinate/Quinolinate PRTase C-terminal domain-like
family: NadC C-terminal domain-like
domain: Quinolinic acid phosphoribosyltransferase (Nicotinate-nucleotide pyrophosphorylase, NadC), C-terminal domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=81.99  E-value=5.4  Score=32.97  Aligned_cols=90  Identities=13%  Similarity=0.133  Sum_probs=59.4

Q ss_pred             HHHHHHHHHh-ccCCcEEEEeCCHhhHHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEE
Q 015894          153 AKDVMAAIQN-VEGARFPVLTPNLKGFEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRG  231 (398)
Q Consensus       153 ~~~v~~~i~~-~~~~~l~~l~~n~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~  231 (398)
                      .++.+..+++ .|..++.+=+.+.++++.+++.|+|.|.+ +..|+               +.++++++..++.+-.+..
T Consensus        66 i~~~i~~~k~~~~~~~I~VEv~s~~q~~~a~~~~~diImL-DN~sp---------------~~~k~~v~~~~~~~~~i~l  129 (169)
T d1qpoa1          66 VVDALRAVRNAAPDLPCEVEVDSLEQLDAVLPEKPELILL-DNFAV---------------WQTQTAVQRRDSRAPTVML  129 (169)
T ss_dssp             HHHHHHHHHHHCTTSCEEEEESSHHHHHHHGGGCCSEEEE-ETCCH---------------HHHHHHHHHHHHHCTTCEE
T ss_pred             hhhhhhhhhhhcCCCceEEEeccHHHhhhhhhcCCcEEEe-cCcCh---------------HhHHHHHHHhhccCCeeEE
Confidence            4455566663 46667888889999999999999998875 43332               3445666777766654432


Q ss_pred             EEeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccC
Q 015894          232 YLSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDT  270 (398)
Q Consensus       232 ~l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT  270 (398)
                      ..+        |-.+++.+.+++    ..|+|.|....-
T Consensus       130 EaS--------GgI~~~ni~~ya----~~GvD~IS~gal  156 (169)
T d1qpoa1         130 ESS--------GGLSLQTAATYA----ETGVDYLAVGAL  156 (169)
T ss_dssp             EEE--------SSCCTTTHHHHH----HTTCSEEECGGG
T ss_pred             EEe--------CCCCHHHHHHHH----HcCCCEEECCcc
Confidence            222        234555555554    599999988764

>d1cbga_ c.1.8.4 (A:) Plant beta-glucosidase (myrosinase) {Creeping white clover (Trifolium repens) [TaxId: 3899]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Family 1 of glycosyl hydrolase
domain: Plant beta-glucosidase (myrosinase)
species: Creeping white clover (Trifolium repens) [TaxId: 3899]

Probab=81.73  E-value=1.7  Score=41.77  Aligned_cols=94  Identities=10%  Similarity=0.022  Sum_probs=69.2

Q ss_pred             HhhHHHHHHcCCCEEEEeccCchHHHhhh-cCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCC---------CCC
Q 015894          175 LKGFEAAVAAGAKEVAIFASASESFSKSN-INCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPV---------EGM  244 (398)
Q Consensus       175 ~~~ie~a~~~Gv~~v~i~~~~Sd~~~~~~-~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~---------~~r  244 (398)
                      .+|++.+.+.|++..|+.++=|-++.+-. -+.-.+++++.+.++++.++++|+++.++|.. |+.|.         ..+
T Consensus        76 ~eDi~l~~~lG~~~yRfSi~WsRI~P~g~~~g~~n~~gl~~Y~~~i~~l~~~GIeP~vTL~H-fdlP~~l~~~~Ggw~n~  154 (490)
T d1cbga_          76 KEDIGIMKDMNLDAYRFSISWPRVLPKGKLSGGVNREGINYYNNLINEVLANGMQPYVTLFH-WDVPQALEDEYRGFLGR  154 (490)
T ss_dssp             HHHHHHHHHTTCCEEEEECCHHHHSTTSSGGGCCCHHHHHHHHHHHHHHHHTTCEEEEEEES-SCCBHHHHHHHCGGGST
T ss_pred             HHHHHHHHHcCCCEEEccCCHHHcCCCCCCCCCCCHHHHHHHHHHHHHHHHhCCeEEEEeec-CCChHHHhhcccccCCH
Confidence            46999999999999999988777665421 23345789999999999999999999988886 55552         234


Q ss_pred             CCHHHHHHHHHHHHh-CC--CC-EEEEcc
Q 015894          245 VPPSKVAYVSKQLYD-MG--CS-EISLGD  269 (398)
Q Consensus       245 ~~~~~l~~~a~~l~~-~G--ad-~I~L~D  269 (398)
                      -.++.++++|+.+.+ .|  ++ .+.|-.
T Consensus       155 ~~~~~F~~Ya~~v~~~fgd~V~~W~T~NE  183 (490)
T d1cbga_         155 NIVDDFRDYAELCFKEFGDRVKHWITLNE  183 (490)
T ss_dssp             THHHHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHhcCccceEEEccC
Confidence            456677777776654 34  55 466666

>d1j93a_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: UROD/MetE-like
family: Uroporphyrinogen decarboxylase, UROD
domain: Uroporphyrinogen decarboxylase, UROD
species: Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]

Probab=81.25  E-value=1.4  Score=40.34  Aligned_cols=81  Identities=16%  Similarity=0.083  Sum_probs=51.8

Q ss_pred             HHHHHHHhCCCCEEEEccCcCcCCH-HH--------HHHHHHHHHhhCCCCeEEEEeCCccchHHHHHHHHHHhCCCEEe
Q 015894          252 YVSKQLYDMGCSEISLGDTIGVGTP-GT--------VIPMLEAVLDAVPVDKLAVHFHDTYGQALSNILASLQMGISTVD  322 (398)
Q Consensus       252 ~~a~~l~~~Gad~I~L~DT~G~~~P-~~--------v~~lv~~l~~~~p~~~l~~H~Hnd~GlA~ANalaAl~aGa~~VD  322 (398)
                      ++++...++|++.|.+.|+.+...+ ..        +.+++..+++..+..++..|++++...- .   .-.+.|++.+.
T Consensus       187 ~~~~~qi~aGad~i~ifDs~a~~l~~~~f~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~is  262 (343)
T d1j93a_         187 KYIRYQADSGAQAVQIFDSWATELSPVDFEEFSLPYLKQIVDSVKLTHPNLPLILYASGSGGLL-E---RLPLTGVDVVS  262 (343)
T ss_dssp             HHHHHHHHTTCSEEEEECGGGGGSCHHHHHHHTHHHHHHHHHHHHHHSTTCCEEEECSSCTTTG-G---GGGGGCCSEEE
T ss_pred             HHHHHHhccCCceEEeccHHHHHHhhHhhhhhccHHHHHHHhhhhhcCCCCceeeecccccchh-h---hhhccCccccc
Confidence            3455666789999999999887744 33        3446667776777778999999864321 1   12245666542


Q ss_pred             eccccCCCCCCCCCCCCCccHHHHHHHH
Q 015894          323 SSVSGLGGCPYAKGASGNVATEDVVYML  350 (398)
Q Consensus       323 ~Sv~GlGecp~a~graGNa~lE~vv~~L  350 (398)
                           +..         +.++.+....+
T Consensus       263 -----~d~---------~~~l~~a~~~~  276 (343)
T d1j93a_         263 -----LDW---------TVDMADGRRRL  276 (343)
T ss_dssp             -----CCT---------TSCHHHHHHHT
T ss_pred             -----ccc---------ccchHHHHHHh
Confidence                 333         56667765555

>d1yx1a1 c.1.15.7 (A:3-252) Hypothetical protein PA2260 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Xylose isomerase-like
family: KguE-like
domain: Hypothetical protein PA2260
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=80.88  E-value=3.8  Score=35.05  Aligned_cols=108  Identities=10%  Similarity=-0.033  Sum_probs=63.1

Q ss_pred             HHHHHHcCCCEEEEeccCchHHHhhhcCCCHHHHHHHHHHHHHHHHhCCCcEEEEEeeeecCCCCCCCCHHHHHHHHHHH
Q 015894          178 FEAAVAAGAKEVAIFASASESFSKSNINCTIEDSLIRYRDVALAARELSIPVRGYLSCVVGCPVEGMVPPSKVAYVSKQL  257 (398)
Q Consensus       178 ie~a~~~Gv~~v~i~~~~Sd~~~~~~~~~s~~~~l~~~~~~v~~ak~~G~~v~~~l~~~fg~~~~~r~~~~~l~~~a~~l  257 (398)
                      ++.+.++|++.|-+...   .+      .+..    .+.++.+.+++.|+++.......+.....  ...+.+.+.++.+
T Consensus        25 l~~~a~~G~dgIEi~~~---~~------~~~~----~~~~l~~~~~~~GL~i~~~~~~~~~~~~~--~~~~~~~~~i~~A   89 (250)
T d1yx1a1          25 LPLLAMAGAQRVELREE---LF------AGPP----DTEALTAAIQLQGLECVFSSPLELWREDG--QLNPELEPTLRRA   89 (250)
T ss_dssp             HHHHHHHTCSEEEEEGG---GC------SSCC----CHHHHHHHHHHTTCEEEEEEEEEEECTTS--SBCTTHHHHHHHH
T ss_pred             HHHHHHhCCCEEEEecc---cC------CCcc----hHHHHHHHHHHcCCEEEEecccccccCch--hhHHHHHHHHHHH
Confidence            68889999999987421   11      1111    12345677888999885332222111111  2235667778888


Q ss_pred             HhCCCCEEEEccCcCcCC-HHHHHHHHHHHHhhCCCCeEEEEeCCccc
Q 015894          258 YDMGCSEISLGDTIGVGT-PGTVIPMLEAVLDAVPVDKLAVHFHDTYG  304 (398)
Q Consensus       258 ~~~Gad~I~L~DT~G~~~-P~~v~~lv~~l~~~~p~~~l~~H~Hnd~G  304 (398)
                      .++|++.|.+.=  |... ..++.++....++ . ++.|.+|.|.+.-
T Consensus        90 ~~LG~~~v~~~~--g~~~~~~~l~~l~~~a~~-~-Gv~l~iE~h~~~~  133 (250)
T d1yx1a1          90 EACGAGWLKVSL--GLLPEQPDLAALGRRLAR-H-GLQLLVENDQTPQ  133 (250)
T ss_dssp             HHTTCSEEEEEE--ECCCSSCCHHHHHHHHTT-S-SCEEEEECCSSHH
T ss_pred             HHhCCCEEEEee--cccchhHHHHHHHHHHHH-c-CCEEEEEeCCCcc
Confidence            899999887631  2222 2345555544433 3 4689999997653

>d2a4aa1 c.1.10.1 (A:3-258) Fructose-1,6-bisphosphate aldolase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: Aldolase
family: Class I aldolase
domain: Fructose-1,6-bisphosphate aldolase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=80.77  E-value=3.5  Score=36.60  Aligned_cols=93  Identities=18%  Similarity=0.133  Sum_probs=58.7

Q ss_pred             EeeeecCCCCCCCCHHHHHHHHHHHHhCCCCEEEEccCcCcCCH---HHHHHH---HHHHHhhCCC----CeEEEEeCCc
Q 015894          233 LSCVVGCPVEGMVPPSKVAYVSKQLYDMGCSEISLGDTIGVGTP---GTVIPM---LEAVLDAVPV----DKLAVHFHDT  302 (398)
Q Consensus       233 l~~~fg~~~~~r~~~~~l~~~a~~l~~~Gad~I~L~DT~G~~~P---~~v~~l---v~~l~~~~p~----~~l~~H~Hnd  302 (398)
                      ++.+.|.|... .+.+.-..-++.+.+.||+.|-++=-.|.+.-   ..+.+.   +..+++...+    +.|+...=++
T Consensus        71 v~tVigFP~G~-~~~~~K~~Ea~~Ai~~GAdEID~Vin~~~l~~g~~~~v~e~~~~i~~~~~~~~~~~lKVIlEt~~L~~  149 (256)
T d2a4aa1          71 IACVINFPYGT-DSMEKVLNDTEKALDDGADEIDLVINYKKIIENTDEGLKEATKLTQSVKKLLTNKILKVIIEVGELKT  149 (256)
T ss_dssp             EEEEESTTTCC-SCHHHHHHHHHHHHHHTCSEEEEECCHHHHHHSHHHHHHHHHHHHHHHHTTCTTSEEEEECCHHHHCS
T ss_pred             EEeecCCCccc-chHHHHHHHHHHHHHcCCCeEEEeccHHHHhcCcHHHHHHHHHHHHHHHhhccCCeeEeeehhhhcCc
Confidence            44556778654 44554444477788899999977755555432   223333   3444443332    2244444567


Q ss_pred             cchHHHHHHHHHHhCCCEEeeccc
Q 015894          303 YGQALSNILASLQMGISTVDSSVS  326 (398)
Q Consensus       303 ~GlA~ANalaAl~aGa~~VD~Sv~  326 (398)
                      ..+-.+..++++++||++|=+|-+
T Consensus       150 ~e~i~~~~~~~~~aGadFVKTSTG  173 (256)
T d2a4aa1         150 EDLIIKTTLAVLNGNADFIKTSTG  173 (256)
T ss_dssp             HHHHHHHHHHHHTTTCSEEECCCS
T ss_pred             HHHHHHHHHHHHhcccHHHHhccC
Confidence            777778888899999999998865