Citrus Sinensis ID: 015902

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
MDNINNNKQQPQQKKQKWFFSLVFSLLLSTILIIISVSMSSTSTKFYNRAYVQTPRPRFVEQQLQVVSTSSEKIPRLAYLISGSTGDGESLKRTLKALYHPRNQYAVHLDLEAPVEERLELARGPTMVTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLSTIPRNLNFIEHTSDIGWKEYQRAKPVIIDPGLYTVQKSDVFWVPEKRNVPTAYKLFTGSAWMMLSRPFIEFCLWGWDNLPRIVLMYYANFLSSPEGYFHTVICNAEEFRNTTVNHDLHFISWDNPPKQHPHFLNVDDYQRMVDSNAPFARKFGRNEPVLDKIDSELLGRIADGFVPGGWFNNKRNSNLTAPNHAVANTSELKPGAGAERIKRLITGLISAEDFHAKHCI
cccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccEEEEEEcccccHHHHHHHHHHHcccccEEEEEEcccccHHHHHHHcccHHHHHHHHHHHHHHHHccccccEEEEcccccccccccHHHHHHHHcccccccEEEcccccccccccccccEEEccccEEEEEccEEEEccccccccccEEEEEccEEEEcHHHHHHHHcccccHHHHHHHHHHccccccccHHHHHHHcccccccccccccEEEEEEccccccccccccHHHHHHHHcccccEEcccccccHHHHHHHHHHHcccccccccccEEccccccccccccccccccccccccHHHHHHHHHHHHHcccccccccccc
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccEEEEEEEEccccHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHccHHHHHHHHHHHHHHHHccccccEEEEEcccccccccHHHHHHHHHcccccccccccccccccHHHccccEEEEccccEEEccccEEEEcccccccccEEEEccccEEEEEcHHHEEEEEccccHHHHHHHHHHHccccccccEEEEEcccccccccEEcccEEEEEEcccccccccEccHHHHHHHHHcccHHHHHcccccHHHHHHHHHHHcccccccccccEEcccccccccccccccccccccccccHHHHHHHHHHHHHccccccccccc
mdninnnkqqpqqkKQKWFFSLVFSLLLSTILIIISVSmsststkfynrayvqtprprfveQQLQVVStssekiprlaylisgstgdgeSLKRTLKALyhprnqyavhldleapveerlelargptmvTNTLHAAAILFKEGGDWDWFInlsasdyplvtqdDLLHVLStiprnlnfiehtsdigwkeyqrakpviidpglytvqksdvfwvpekrnvptayklftgsawmmlsrPFIEFCLWGWDNLPRIVLMYYANflsspegyfHTVICNAEEfrnttvnhdlhfiswdnppkqhphflnvddyqrmvdsnapfarkfgrnepvldkiDSELLGriadgfvpggwfnnkrnsnltapnhavantselkpgagAERIKRLITGLIsaedfhakhci
mdninnnkqqpqqkkQKWFFSLVFSLLLSTILIIISVSMSSTSTKFYNRAYVQTPRPRFVEQQLQvvstssekiprlaylisgstgdgeSLKRTLKALYHPRNQYAVHLDLEAPVEERLELARGPTMVTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLSTIPRNLNFIEHTSDIGWKEYQRAKPVIIDPGLYTVQKSDVFWVPEKRNVPTAYKLFTGSAWMMLSRPFIEFCLWGWDNLPRIVLMYYANFLSSPEGYFHTVICNAEEFRNTTVNHDLHFISWDNPPKQHPHFLNVDDYQRMVDSNAPfarkfgrnepvlDKIDSELLGRIADGFVPGGWFNNKRNSNLTAPNHAVantselkpgagAERIKRLITglisaedfhakhci
MDninnnkqqpqqkkqkWffslvfslllstiliiisvsmsststKFYNRAYVQTPRPRFVEQQLQVVSTSSEKIPRLAYLISGSTGDGESLKRTLKALYHPRNQYAVHLDLEAPVEERLELARGPTMVTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLSTIPRNLNFIEHTSDIGWKEYQRAKPVIIDPGLYTVQKSDVFWVPEKRNVPTAYKLFTGSAWMMLSRPFIEFCLWGWDNLPRIVLMYYANFLSSPEGYFHTVICNAEEFRNTTVNHDLHFISWDNPPKQHPHFLNVDDYQRMVDSNAPFARKFGRNEPVLDKIDSELLGRIADGFVPGGWFNNKRNSNLTAPNHAVANTSELKPGAGAERIKRLITGLISAEDFHAKHCI
****************KWFFSLVFSLLLSTILIIISVSMSSTSTKFYNRAYVQTPRPRFVEQQLQVVST**EKIPRLAYLISGST****SLKRTLKALYHPRNQYAVHLDLEAPVEERLELARGPTMVTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLSTIPRNLNFIEHTSDIGWKEYQRAKPVIIDPGLYTVQKSDVFWVPEKRNVPTAYKLFTGSAWMMLSRPFIEFCLWGWDNLPRIVLMYYANFLSSPEGYFHTVICNAEEFRNTTVNHDLHFISWDNPPKQHPHFLNVDDYQRMVDSNAPFARKFGRNEPVLDKIDSELLGRIADGFVPGGWFNNK*************************RIKRLITGLISAE********
****************KWFFSLVFSLLLSTILIIISVSMSSTSTKFYNRAYVQTPRP*******************LAYLISGSTGDGESLKRTLKALYHPRNQYAVHLDLEAPVEERLELARGPTMVTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLSTIPRNLNFIEHTSDIGWKEYQRAKPVIIDPGLYTVQKSDVFWVPEKRNVPTAYKLFTGSAWMMLSRPFIEFCLWGWDNLPRIVLMYYANFLSSPEGYFHTVICNAEEFRNTTVNHDLHFISWDNPPKQHPHFLNVDDYQRMVDSNAPFARKFGRNEPVLDKIDSELLGRIADGFVPGGWFNNKRN*N**APNHAVANTSELKPGAGAERIKRLITGLISAEDFHAKHC*
**************KQKWFFSLVFSLLLSTILIIISVSMSSTSTKFYNRAYVQTPRPRFVEQQLQVVSTSSEKIPRLAYLISGSTGDGESLKRTLKALYHPRNQYAVHLDLEAPVEERLELARGPTMVTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLSTIPRNLNFIEHTSDIGWKEYQRAKPVIIDPGLYTVQKSDVFWVPEKRNVPTAYKLFTGSAWMMLSRPFIEFCLWGWDNLPRIVLMYYANFLSSPEGYFHTVICNAEEFRNTTVNHDLHFISWDNPPKQHPHFLNVDDYQRMVDSNAPFARKFGRNEPVLDKIDSELLGRIADGFVPGGWFNNKRNSNLTAPNHAVANTSELKPGAGAERIKRLITGLISAEDFHAKHCI
************QKKQKWFFSLVFSLLLSTILIIISVSMSSTSTKFYNRAYVQTPRPRFVEQQLQVVSTSSEKIPRLAYLISGSTGDGESLKRTLKALYHPRNQYAVHLDLEAPVEERLELARGPTMVTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLSTIPRNLNFIEHTSDIGWKEYQRAKPVIIDPGLYTVQKSDVFWVPEKRNVPTAYKLFTGSAWMMLSRPFIEFCLWGWDNLPRIVLMYYANFLSSPEGYFHTVICNAEEFRNTTVNHDLHFISWDNPPKQHPHFLNVDDYQRMVDSNAPFARKFGRNEPVLDKIDSELLGRIADGFVPGGWFNNKRNSNLTAPNHAVANTSELKPGAGAERIKRLITGLISAEDFH***C*
iiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDNINNNKQQPQQKKQKWFFSLVFSLLLSTILIIISVSMSSTSTKFYNRAYVQTPRPRFVEQQLQVVSTSSEKIPRLAYLISGSTGDGESLKRTLKALYHPRNQYAVHLDLEAPVEERLELARGPTMVTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLSTIPRNLNFIEHTSDIGWKEYQRAKPVIIDPGLYTVQKSDVFWVPEKRNVPTAYKLFTGSAWMMLSRPFIEFCLWGWDNLPRIVLMYYANFLSSPEGYFHTVICNAEEFRNTTVNHDLHFISWDNPPKQHPHFLNVDDYQRMVDSNAPFARKFGRNEPVLDKIDSELLGRIADGFVPGGWFNNKRNSNLTAPNHAVANTSELKPGAGAERIKRLITGLISAEDFHAKHCI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query398 2.2.26 [Sep-21-2011]
Q9EPI1 821 Xylosyltransferase 1 (Fra yes no 0.650 0.315 0.269 1e-17
Q5QQ53 880 Xylosyltransferase oxt OS yes no 0.685 0.310 0.277 1e-17
Q5QQ56 950 Xylosyltransferase 1 OS=C yes no 0.650 0.272 0.272 1e-16
Q7KVA1 876 Xylosyltransferase oxt OS yes no 0.685 0.311 0.268 3e-16
Q5QQ57 945 Xylosyltransferase 1 OS=P yes no 0.650 0.274 0.269 3e-16
Q86Y38 959 Xylosyltransferase 1 OS=H yes no 0.650 0.270 0.269 3e-16
Q811B1 953 Xylosyltransferase 1 OS=M yes no 0.650 0.271 0.269 5e-16
Q5QQ51 865 Xylosyltransferase 2 OS=P no no 0.653 0.300 0.276 1e-15
Q5QQ49 867 Xylosyltransferase 2 OS=B no no 0.655 0.301 0.277 2e-15
Q9H1B5 865 Xylosyltransferase 2 OS=H no no 0.653 0.300 0.276 2e-15
>sp|Q9EPI1|XYLT1_RAT Xylosyltransferase 1 (Fragment) OS=Rattus norvegicus GN=Xylt1 PE=2 SV=1 Back     alignment and function desciption
 Score = 91.3 bits (225), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/312 (26%), Positives = 140/312 (44%), Gaps = 53/312 (16%)

Query: 76  RLAYLISGSTGDGESLKRTLKALYHPRNQYAVHLDLEAPVEER--LELAR---------- 123
           R+A+++         L+R  KA+YH  + Y +H+D  +    R  L+ +R          
Sbjct: 192 RIAFVLVVHGRASRQLQRMFKAIYHKDHFYYIHVDKRSNYLHRQVLQFSRQYDNVRVTSW 251

Query: 124 -------GPTMVTNTLHAAAILFKEGGDWDW--FINLSASDYPLVTQDDLLHVLSTIPRN 174
                  G ++++  L +   L  E  DW W  FINLSA+DYP+ T D L+  LS   R+
Sbjct: 252 RMATIWGGASLLSTYLQSMRDLL-EMTDWPWDFFINLSAADYPIRTNDQLVAFLSRY-RD 309

Query: 175 LNFIEHTSDIGWKEYQRAKPVII---DPGLYTVQKSDVFWVPEKRNVPTAYKLFTGSAWM 231
           +NF+        K + R     I   D     ++     W    R +P    +  GS W 
Sbjct: 310 MNFL--------KSHGRDNARFIRKQDLDRLFLECDTHMWRLGDRRIPEGIAVDGGSDWF 361

Query: 232 MLSRPFIEFCLWGWDNLPRIVLMYYANFLSSPEGYFHTVICNAEEFRNTTVNHDLHFISW 291
           +L+R F+E+  +  D+L   +  +Y+  L   E +FHTV+ N+    +T V+++L   +W
Sbjct: 362 LLNRKFVEYVAFSTDDLVTKMKQFYSYTLLPAESFFHTVLENSPHC-DTMVDNNLRITNW 420

Query: 292 DNP---PKQHPHFLN----------VDDYQRMVDSNAP--FARKFGR--NEPVLDKIDSE 334
           +       Q+ H ++            D+ R   +  P  FARKF    N+ ++ ++DS 
Sbjct: 421 NRKLGCKCQYKHIVDWCGCSPNDFKPQDFHRFQQTARPTFFARKFEAIVNQEIIGQLDSY 480

Query: 335 LLGRIADGFVPG 346
           L G    G  PG
Sbjct: 481 LYGNYPAG-TPG 491
Catalyzes the first step in biosynthesis of glycosaminoglycan. Transfers D-xylose from UDP-D-xylose to specific serine residues of the core protein. Initial enzyme in the biosynthesis of chondroitin sulfate and dermatan sulfate proteoglycans in fibroblasts and chondrocytes.
Rattus norvegicus (taxid: 10116)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: 2EC: 6
>sp|Q5QQ53|XYLT_DROPS Xylosyltransferase oxt OS=Drosophila pseudoobscura pseudoobscura GN=oxt PE=2 SV=1 Back     alignment and function description
>sp|Q5QQ56|XYLT1_CANFA Xylosyltransferase 1 OS=Canis familiaris GN=XYLT1 PE=2 SV=1 Back     alignment and function description
>sp|Q7KVA1|XYLT_DROME Xylosyltransferase oxt OS=Drosophila melanogaster GN=oxt PE=2 SV=1 Back     alignment and function description
>sp|Q5QQ57|XYLT1_PANTR Xylosyltransferase 1 OS=Pan troglodytes GN=XYLT1 PE=2 SV=1 Back     alignment and function description
>sp|Q86Y38|XYLT1_HUMAN Xylosyltransferase 1 OS=Homo sapiens GN=XYLT1 PE=1 SV=1 Back     alignment and function description
>sp|Q811B1|XYLT1_MOUSE Xylosyltransferase 1 OS=Mus musculus GN=Xylt1 PE=2 SV=1 Back     alignment and function description
>sp|Q5QQ51|XYLT2_PANTR Xylosyltransferase 2 OS=Pan troglodytes GN=XYLT2 PE=2 SV=1 Back     alignment and function description
>sp|Q5QQ49|XYLT2_BOVIN Xylosyltransferase 2 OS=Bos taurus GN=XYLT2 PE=2 SV=1 Back     alignment and function description
>sp|Q9H1B5|XYLT2_HUMAN Xylosyltransferase 2 OS=Homo sapiens GN=XYLT2 PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query398
225445480429 PREDICTED: xylosyltransferase 1-like [Vi 0.987 0.916 0.705 1e-174
449443089420 PREDICTED: xylosyltransferase 1-like [Cu 0.967 0.916 0.700 1e-170
356510507490 PREDICTED: LOW QUALITY PROTEIN: xylosylt 0.984 0.8 0.710 1e-167
356514479428 PREDICTED: xylosyltransferase 1-like [Gl 0.994 0.925 0.686 1e-166
297738945472 unnamed protein product [Vitis vinifera] 0.929 0.783 0.676 1e-162
356548587420 PREDICTED: xylosyltransferase 1-like [Gl 0.972 0.921 0.698 1e-162
356565185422 PREDICTED: xylosyltransferase 1-like [Gl 0.854 0.805 0.747 1e-161
388493672428 unknown [Lotus japonicus] 0.962 0.894 0.699 1e-157
224104745438 predicted protein [Populus trichocarpa] 0.856 0.778 0.703 1e-152
357478021426 Xylosyltransferase [Medicago truncatula] 0.912 0.852 0.697 1e-148
>gi|225445480|ref|XP_002285159.1| PREDICTED: xylosyltransferase 1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 297/421 (70%), Positives = 341/421 (80%), Gaps = 28/421 (6%)

Query: 4   INNNKQQPQQKKQKWFFSLVFSLLLSTILIIISVSMSSTSTKFYNRAYVQTPRPRFVEQQ 63
           ++  + +PQ KK+KWF  LVFSLL+ + L+++++  +STST  ++R  ++   P FVE +
Sbjct: 9   VSTMENKPQHKKKKWFLPLVFSLLVFSFLVVLAI-FTSTSTSPFHRQPIKVQNPVFVESK 67

Query: 64  LQVVSTSS-EKIPRLAYLISGSTGDGESLKRTLKALYHPRNQYAVHLDLEAPVEERLELA 122
           L + S SS   +PR+AYLISGS GDG SL+RTLKALYHP NQYAVHLDL+A  EERLEL 
Sbjct: 68  LGLASASSANSVPRIAYLISGSKGDGLSLRRTLKALYHPWNQYAVHLDLKASPEERLELL 127

Query: 123 --------------------------RGPTMVTNTLHAAAILFKEGGDWDWFINLSASDY 156
                                     RGPTMV+NTLHAAAIL KEGGDWDWFINLSASDY
Sbjct: 128 NFVKNESVFSRWGNVRVIVRANLVTYRGPTMVSNTLHAAAILMKEGGDWDWFINLSASDY 187

Query: 157 PLVTQDDLLHVLSTIPRNLNFIEHTSDIGWKEYQRAKPVIIDPGLYTVQKSDVFWVPEKR 216
           PLVTQDDLLH LSTIPR+LNFIEHTSDIGWKEYQRAKP+IIDPGLY+++K+DVFW  E R
Sbjct: 188 PLVTQDDLLHTLSTIPRDLNFIEHTSDIGWKEYQRAKPLIIDPGLYSLKKTDVFWATETR 247

Query: 217 NVPTAYKLFTGSAWMMLSRPFIEFCLWGWDNLPRIVLMYYANFLSSPEGYFHTVICNAEE 276
           +VPTAY+LFTGSAWMMLSR F+E+ LWGWDNLPRIVLMYYANFLSSPEGYFHTVICNAEE
Sbjct: 248 SVPTAYRLFTGSAWMMLSRSFVEYTLWGWDNLPRIVLMYYANFLSSPEGYFHTVICNAEE 307

Query: 277 FRNTTVNHDLHFISWDNPPKQHPHFLNVDDYQRMVDSNAPFARKFGRNEPVLDKIDSELL 336
           FRNTTVNHDLHFISWDNPPKQHPHFL VD+YQ M+ SNAPFARKFGRNEPVLDKID ELL
Sbjct: 308 FRNTTVNHDLHFISWDNPPKQHPHFLTVDNYQSMIGSNAPFARKFGRNEPVLDKIDKELL 367

Query: 337 GRIADGFVPGGWFNNKRNSNLTAPNHAVANTSELKPGAGAERIKRLITGLISAEDFHAKH 396
           GR ADGFVPGGWFNN+ N+N+TAP+  +AN S L+PG GAER+ RLITGL+SAEDF    
Sbjct: 368 GRSADGFVPGGWFNNEGNTNITAPHDIIANVSILRPGPGAERLNRLITGLLSAEDFQRNQ 427

Query: 397 C 397
           C
Sbjct: 428 C 428

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449443089|ref|XP_004139313.1| PREDICTED: xylosyltransferase 1-like [Cucumis sativus] gi|449493624|ref|XP_004159381.1| PREDICTED: xylosyltransferase 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|356510507|ref|XP_003523979.1| PREDICTED: LOW QUALITY PROTEIN: xylosyltransferase 2-like [Glycine max] Back     alignment and taxonomy information
>gi|356514479|ref|XP_003525933.1| PREDICTED: xylosyltransferase 1-like [Glycine max] Back     alignment and taxonomy information
>gi|297738945|emb|CBI28190.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356548587|ref|XP_003542682.1| PREDICTED: xylosyltransferase 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356565185|ref|XP_003550824.1| PREDICTED: xylosyltransferase 1-like [Glycine max] Back     alignment and taxonomy information
>gi|388493672|gb|AFK34902.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|224104745|ref|XP_002313551.1| predicted protein [Populus trichocarpa] gi|222849959|gb|EEE87506.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|357478021|ref|XP_003609296.1| Xylosyltransferase [Medicago truncatula] gi|355510351|gb|AES91493.1| Xylosyltransferase [Medicago truncatula] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query398
TAIR|locus:2147880434 AT5G15050 [Arabidopsis thalian 0.685 0.629 0.742 1.1e-131
TAIR|locus:2178047447 AT5G39990 [Arabidopsis thalian 0.778 0.693 0.630 1.3e-126
TAIR|locus:2124009421 AT4G27480 [Arabidopsis thalian 0.675 0.638 0.610 1.1e-114
TAIR|locus:2087125424 AT3G15350 [Arabidopsis thalian 0.675 0.634 0.606 1.4e-114
TAIR|locus:2125502448 AT4G03340 [Arabidopsis thalian 0.701 0.622 0.560 5.7e-107
TAIR|locus:2020748447 AT1G03520 [Arabidopsis thalian 0.698 0.621 0.561 1.2e-106
TAIR|locus:2037065423 AT1G53100 [Arabidopsis thalian 0.670 0.631 0.579 5.1e-106
TAIR|locus:2096399378 UNE7 "unfertilized embryo sac 0.540 0.568 0.652 1.3e-101
TAIR|locus:505006303384 AT2G37585 [Arabidopsis thalian 0.550 0.570 0.613 7.9e-98
TAIR|locus:2076181417 AT3G24040 [Arabidopsis thalian 0.690 0.659 0.445 8.4e-79
TAIR|locus:2147880 AT5G15050 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1118 (398.6 bits), Expect = 1.1e-131, Sum P(2) = 1.1e-131
 Identities = 205/276 (74%), Positives = 235/276 (85%)

Query:   123 RGPTMVTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLSTIPRNLNFIEHTS 182
             RGPTMV NTLHAAAIL +EGGDWDWFINLSASDYPLVTQDDLLH  S +PR+LNFI+HTS
Sbjct:   160 RGPTMVANTLHAAAILLREGGDWDWFINLSASDYPLVTQDDLLHTFSYLPRDLNFIDHTS 219

Query:   183 DIGWKEYQRAKPVIIDPGLYTVQKSDVFWVPEKRNVPTAYKLFTGSAWMMLSRPFIEFCL 242
             +IGWKE  RAKP+IIDPGLY  +K+DVFWV +KR++PTA+KLFTGSAWMMLSRPF+++ +
Sbjct:   220 NIGWKESHRAKPIIIDPGLYMSKKADVFWVSQKRSMPTAFKLFTGSAWMMLSRPFVDYFI 279

Query:   243 WGWDNLPRIVLMYYANFLSSPEGYFHTVICNAEEFRNTTVNHDLHFISWDNPPKQHPHFL 302
             WGWDNLPRIVLMYYANFLSSPEGYFHTVICNA EF NTTVN DLHFISWDNPPKQHPH L
Sbjct:   280 WGWDNLPRIVLMYYANFLSSPEGYFHTVICNAREFTNTTVNSDLHFISWDNPPKQHPHHL 339

Query:   303 NVDDYQRMVDSNAPFARKFGRNEPVLDKIDSELLGRIADGFV-PGGWFNNKRNSNLTAPN 361
              +DD+QRMVDSNAPFARKF R+EPVLDKIDSELL R + G V PGGW    R  N + P 
Sbjct:   340 TLDDFQRMVDSNAPFARKFRRDEPVLDKIDSELLFR-SHGMVTPGGWCIGTRE-NGSDPC 397

Query:   362 HAVANTSELKPGAGAERIKRLITGLISAEDFHAKHC 397
               + +TS +KPG GA+RI++LIT L+S E+F  + C
Sbjct:   398 AVIGDTSVIKPGLGAKRIEKLITYLLSTENFRPRQC 433
GO:0005794 "Golgi apparatus" evidence=ISM
GO:0008375 "acetylglucosaminyltransferase activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0016051 "carbohydrate biosynthetic process" evidence=ISS
GO:0016757 "transferase activity, transferring glycosyl groups" evidence=ISS
GO:0007020 "microtubule nucleation" evidence=RCA
TAIR|locus:2178047 AT5G39990 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2124009 AT4G27480 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087125 AT3G15350 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2125502 AT4G03340 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2020748 AT1G03520 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037065 AT1G53100 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2096399 UNE7 "unfertilized embryo sac 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:505006303 AT2G37585 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076181 AT3G24040 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.1LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00016884001
SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (418 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query398
PLN03183421 PLN03183, PLN03183, acetylglucosaminyltransferase 0.0
pfam02485242 pfam02485, Branch, Core-2/I-Branching enzyme 2e-73
>gnl|CDD|178725 PLN03183, PLN03183, acetylglucosaminyltransferase family protein; Provisional Back     alignment and domain information 
 Score =  534 bits (1378), Expect = 0.0
 Identities = 226/420 (53%), Positives = 280/420 (66%), Gaps = 43/420 (10%)

Query: 15  KQKWFFSLVFSLLLSTILIIISVSMSSTST--------KFYNRAYVQTPRPRFVEQQLQV 66
           +++W F LV + L+   L+  S +M   S+          +  +     R  F E ++  
Sbjct: 7   EKRWVFPLVITSLVCVFLLATSFNMGLVSSLRTINSIFSIFPLSRTNQTRLEFAESKVNQ 66

Query: 67  VSTS---SEKIPRLAYLISGSTGDGESLKRTLKALYHPRNQYAVHLDLEAPVEERLELA- 122
                   +K+PR AYL+SGS GD E L RTL+ALYHPRNQY VHLDLE+P EERLELA 
Sbjct: 67  SPHPPPVQDKLPRFAYLVSGSKGDLEKLWRTLRALYHPRNQYVVHLDLESPAEERLELAS 126

Query: 123 -------------------------RGPTMVTNTLHAAAILFKEGGDWDWFINLSASDYP 157
                                    RGPTMV NTLHA AIL K   DWDWFINLSASDYP
Sbjct: 127 RVENDPMFSKVGNVYMITKANLVTYRGPTMVANTLHACAILLKRSKDWDWFINLSASDYP 186

Query: 158 LVTQDDLLHVLSTIPRNLNFIEHTSDIGWKEYQRAKPVIIDPGLYTVQKSDVFWVPEKRN 217
           LVTQDDL+H  ST+ RNLNFIEHTS +GWKE +RA P+IIDPGLY+  KSD++WV  +R+
Sbjct: 187 LVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDPGLYSTNKSDIYWVTPRRS 246

Query: 218 VPTAYKLFTGSAWMMLSRPFIEFCLWGWDNLPRIVLMYYANFLSSPEGYFHTVICNAEEF 277
           +PTA+KLFTGSAWM+LSR F+E+C+WGWDNLPR +LMYY NF+SSPEGYFHTVICN  EF
Sbjct: 247 LPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFHTVICNVPEF 306

Query: 278 RNTTVNHDLHFISWDNPPKQHPHFLNVDDYQRMVDSNAPFARKFGRNEPVLDKIDSELLG 337
             T VNHDLH+ISWDNPPKQHPH L+++D ++M+ S A FARKF R++PVLDKID ELLG
Sbjct: 307 AKTAVNHDLHYISWDNPPKQHPHTLSLNDTEKMIASGAAFARKFRRDDPVLDKIDKELLG 366

Query: 338 RIADGFVPGGWFNNKRNSNLTAPNHAVANTSELKPGAGAERIKRLITGLISAEDFHAKHC 397
           R    F PGGW + K           V + +++KPG GA+R+K L++ L+         C
Sbjct: 367 RKNGSFTPGGWCSGK------PKCSRVGDPAKIKPGPGAQRLKGLVSRLVLEAKLGQNQC 420

Length = 421
>gnl|CDD|217062 pfam02485, Branch, Core-2/I-Branching enzyme Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 398
PLN03183421 acetylglucosaminyltransferase family protein; Prov 100.0
KOG0799439 consensus Branching enzyme [Carbohydrate transport 100.0
PF02485244 Branch: Core-2/I-Branching enzyme; InterPro: IPR00 100.0
>PLN03183 acetylglucosaminyltransferase family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=8.5e-109  Score=837.75  Aligned_cols=380  Identities=59%  Similarity=1.081  Sum_probs=344.7

Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHhh----cCCCcc-c---cccccccCCCCCcchhhhhhccc---CCCCCCCcEEEEE
Q 015902           13 QKKQKWFFSLVFSLLLSTILIIISVS----MSSTST-K---FYNRAYVQTPRPRFVEQQLQVVS---TSSEKIPRLAYLI   81 (398)
Q Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~kiAYLI   81 (398)
                      .+++||++|++++++++++|+++++.    +++++. +   +++....+.+.+.++|+++.+.+   +.++++|||||||
T Consensus         5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~AYLI   84 (421)
T PLN03183          5 NVEKRWVFPLVITSLVCVFLLATSFNMGLVSSLRTINSIFSIFPLSRTNQTRLEFAESKVNQSPHPPPVQDKLPRFAYLV   84 (421)
T ss_pred             chhhhHHHHHHHHHHHHHHHHHHHhhcccCCCccccccccccccccccccccccccccccCCCCCCCCCCCCCCeEEEEE
Confidence            47899999999999999888665541    122111 2   22333445666779999887543   3344579999999


Q ss_pred             EecCCCHHHHHHHHHHHcCCCCeEEEEEcCCCCHHHHhhcc--------------------------ccchHHHHHHHHH
Q 015902           82 SGSTGDGESLKRTLKALYHPRNQYAVHLDLEAPVEERLELA--------------------------RGPTMVTNTLHAA  135 (398)
Q Consensus        82 lahk~d~~~l~rLl~aLy~p~n~y~IHvD~ks~~~~r~~l~--------------------------gg~S~V~AtL~~~  135 (398)
                      +||+||.+|++|||++||||+|+||||||+||+..++.+++                          ||+|||+|||+||
T Consensus        85 ~~h~~d~~~l~RLL~aLYhprN~y~IHlDkKS~~~er~~l~~~v~~~~~~~~~~NV~vl~k~~~V~WGG~S~V~AtL~~m  164 (421)
T PLN03183         85 SGSKGDLEKLWRTLRALYHPRNQYVVHLDLESPAEERLELASRVENDPMFSKVGNVYMITKANLVTYRGPTMVANTLHAC  164 (421)
T ss_pred             EecCCcHHHHHHHHHHhcCCCceEEEEecCCCChHHHHHHHHHhhccchhhccCcEEEEecceeeccCChHHHHHHHHHH
Confidence            99988999999999999999999999999999987754420                          9999999999999


Q ss_pred             HHHHhcCCCccEEEEecCCcccccChhHHHHHhccCCCCcceEeeccCCCcceeecccceecCCCccccccccccccccc
Q 015902          136 AILFKEGGDWDWFINLSASDYPLVTQDDLLHVLSTIPRNLNFIEHTSDIGWKEYQRAKPVIIDPGLYTVQKSDVFWVPEK  215 (398)
Q Consensus       136 ~~lL~~~~~wdyfi~LSg~DyPLkt~~eI~~~fs~~~~g~nFIe~~~~~~wk~~~r~~~~i~dpgly~~~k~~~~~~~~k  215 (398)
                      +.||+...+|||||||||+||||+||+||++.|+++|+|+|||++++..+|++.+|+++++++||+|..++++++|..++
T Consensus       165 ~~LL~~~~~WDyfinLSGsDyPLkTqdelI~~F~~~nr~~NFI~~~s~~~wk~~~r~~~~i~~pgl~~~~ks~~~~~~~~  244 (421)
T PLN03183        165 AILLKRSKDWDWFINLSASDYPLVTQDDLIHTFSTLDRNLNFIEHTSQLGWKEEKRAMPLIIDPGLYSTNKSDIYWVTPR  244 (421)
T ss_pred             HHHHhhCCCCCEEEEccCCcccccCHHHHHHHHHhCCCCceeeecccccccchhhhcceEEecCceeecccchhhhhhhh
Confidence            99999889999999999999999999998887777899999999998899999999999999999998888888999999


Q ss_pred             CCCCCCceeeccceeEEecHHHHHHhhhccCCcHHHHHHHhcCCCCCCChhhhhhhccccccccccccCceeEEecCCCC
Q 015902          216 RNVPTAYKLFTGSAWMMLSRPFIEFCLWGWDNLPRIVLMYYANFLSSPEGYFHTVICNAEEFRNTTVNHDLHFISWDNPP  295 (398)
Q Consensus       216 R~~P~~~~ly~GSqW~~LtR~fveyil~~~d~lp~~ll~yf~~t~~pDE~fFqTll~Ns~~f~~~~vn~~LRyi~W~~~~  295 (398)
                      |.+|.++++|+||+|++|||+||+||+++|||+|++++|||+++++|||+|||||+||+++|+++++|+|||||+|++++
T Consensus       245 R~~P~~~~lf~GS~W~sLSR~fvey~l~~~dnlpr~ll~y~~~t~~pdE~fFqTVl~NS~~f~~t~vn~nLRyI~W~~~~  324 (421)
T PLN03183        245 RSLPTAFKLFTGSAWMVLSRSFVEYCIWGWDNLPRTLLMYYTNFVSSPEGYFHTVICNVPEFAKTAVNHDLHYISWDNPP  324 (421)
T ss_pred             ccCCccccccCCCceEEecHHHHHHHHhcccchHHHHHHHHhcCCCCchHHHHHHHhhcccccccccCCceeEEecCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999989999999999999999998


Q ss_pred             CCCCccCCHhhHHHHhcCCCcEEecCCCChhHHHHHHHHHhCCCCCCcccCceecCCCCCCCCCCccccCCCCcccCCch
Q 015902          296 KQHPHFLNVDDYQRMVDSNAPFARKFGRNEPVLDKIDSELLGRIADGFVPGGWFNNKRNSNLTAPNHAVANTSELKPGAG  375 (398)
Q Consensus       296 ~~~P~~l~~~D~~~l~~S~~lFARKF~~d~~vld~Id~~ll~r~~~~~~~g~w~~~~~~~~~~~~c~~~g~~~~~~pg~~  375 (398)
                      ++||++|+++|+++|++|+++|||||+.|++|||+||+++++|.+++++|||||+|      .||||+|||+++||||||
T Consensus       325 ~~~P~~l~~~D~~~l~~S~~lFARKFd~d~~vl~~Id~~ll~r~~~~~~~g~wc~~------~~~c~~~~~~~~~~p~~~  398 (421)
T PLN03183        325 KQHPHTLSLNDTEKMIASGAAFARKFRRDDPVLDKIDKELLGRKNGSFTPGGWCSG------KPKCSRVGDPAKIKPGPG  398 (421)
T ss_pred             CCCCcccCHHHHHHHHhCCCccccCCCCChHHHHHHHHHHhCCCCCCccCCcccCC------CCcccccCCcCccCCCcH
Confidence            89999999999999999999999999999999999999999999999999999987      469999999999999999


Q ss_pred             HHHHHHHHHhhcccccccCCCCC
Q 015902          376 AERIKRLITGLISAEDFHAKHCI  398 (398)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~~~c~  398 (398)
                      |+||++||++||++++||++||+
T Consensus       399 ~~~~~~~~~~~~~~~~~~~~~c~  421 (421)
T PLN03183        399 AQRLKGLVSRLVLEAKLGQNQCK  421 (421)
T ss_pred             HHHHHHHHHHHhchhccccccCC
Confidence            99999999999999999999996

>KOG0799 consensus Branching enzyme [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF02485 Branch: Core-2/I-Branching enzyme; InterPro: IPR003406 The biosynthesis of disaccharides, oligosaccharides and polysaccharides involves the action of hundreds of different glycosyltransferases Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query398
3otk_A391 Structure And Mechanisim Of Core 2 Beta1,6-N- Acety 7e-07
2gak_A391 X-ray Crystal Structure Of Murine Leukocyte-type Co 2e-06
>pdb|3OTK|A Chain A, Structure And Mechanisim Of Core 2 Beta1,6-N- Acetylglucosaminyltransferase: A Metal-Ion Independent Gt-A Glycosyltransferase Length = 391 Back     alignment and structure 
Iteration: 1

 Score = 51.6 bits (122), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 48/204 (23%), Positives = 86/204 (42%), Gaps = 32/204 (15%)
Query: 89  ESLKRTLKALYHPRNQYAVHLDLEAPVEERLELARGP---------------------TM 127
           E L R L+A+Y P+N Y +H+D +A  E  L   +G                      T 
Sbjct: 97  EMLDRLLRAIYMPQNFYCIHVDRKAE-ESFLAAVQGIASCFDNVFVASQLESVVYASWTR 155
Query: 128 VTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLSTIPRNLNFIEHTSDIGWK 187
           V   L+    L++   +W + INLS  D+P+ T  +++  L       N          +
Sbjct: 156 VKADLNCMKDLYRMNANWKYLINLSGMDFPIKTNLEIVRKLKCSTGENNLETEKMPPNKE 215
Query: 188 EYQRAKPVIIDPGLYTVQKSDVFWVPEKRNVPTAYKLFTGSAWMMLSRPFIEFCLWGWDN 247
           E  + +  ++D  L     + +   P     P    LF+GSA+ +++R ++ + L   +N
Sbjct: 216 ERWKKRYAVVDGKL---TNTGIVKAPPPLKTP----LFSGSAYFVVTREYVGYVLEN-EN 267
Query: 248 LPRIVLMYYANFLSSPEGYFHTVI 271
           + +  LM +A    SP+ +    I
Sbjct: 268 IQK--LMEWAQDTYSPDEFLWATI 289
>pdb|2GAK|A Chain A, X-ray Crystal Structure Of Murine Leukocyte-type Core 2 B1,6-n- Acetylglucosaminyltransferase (c2gnt-l) Length = 391 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query398
2gak_A391 Beta-1,6-N-acetylglucosaminyltransferase; glycopro 3e-61
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A* Length = 391 Back     alignment and structure
 Score =  201 bits (513), Expect = 3e-61
 Identities = 66/317 (20%), Positives = 109/317 (34%), Gaps = 58/317 (18%)

Query: 69  TSSEKIPRLAYLISGSTGDGESLKRTLKALYHPRNQYAVHLDLEAPVEERLELA------ 122
           T  E    +AY I       E L R L+A+Y P+N Y +H+D +A       +       
Sbjct: 78  TKEEVGFPIAYSIVVH-HKIEMLDRLLRAIYMPQNFYCIHVDRKAEESFLAAVQGIASCF 136

Query: 123 --------------RGPTMVTNTLHAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVL 168
                            T V   L+    L++   +W + INL   D+P+ T  +++  L
Sbjct: 137 DNVFVASQLESVVYASWTRVKADLNCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKL 196

Query: 169 STIPRNLNFIEHTSDIGWKEYQRAKPVIIDPGLYTVQKSDVFWVPEKRNVPTAYKLFTGS 228
                  N          +E  + +  ++D  L             K   P    LF+GS
Sbjct: 197 KCSTGENNLETEKMPPNKEERWKKRYAVVDGKLTNTGI-------VKAPPPLKTPLFSGS 249

Query: 229 AWMMLSRPFIEFCLWGWDNLPRIVLMYYANFLSSPEGYFHTVICNAEEF----------R 278
           A+ +++R ++ + L   +N     LM +A    SP+ +    I    E            
Sbjct: 250 AYFVVTREYVGYVL---ENENIQKLMEWAQDTYSPDEFLWATIQRIPEVPGSFPSSNKYD 306

Query: 279 NTTVNHDLHFISWD-----------NPPKQHPH-----FLNVDDYQRMVDSNAPFARKFG 322
            + +N    F+ W             PP    H          D   M+  +  FA KF 
Sbjct: 307 LSDMNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDLSWMLRQHHLFANKFD 366

Query: 323 RN-EPVLDKIDSELLGR 338
            + +P   +   E L R
Sbjct: 367 MDVDPFAIQCLDEHLRR 383
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query398
2gak_A391 Beta-1,6-N-acetylglucosaminyltransferase; glycopro 100.0
>2gak_A Beta-1,6-N-acetylglucosaminyltransferase; glycoprotein, CIS-peptide, dimer; HET: NAG; 2.00A {Mus musculus} PDB: 2gam_A* 3otk_A* Back     alignment and structure
Probab=100.00  E-value=1e-58  Score=470.16  Aligned_cols=257  Identities=23%  Similarity=0.314  Sum_probs=217.2

Q ss_pred             CCCcEEEEEEecCCCHHHHHHHHHHHcCCCCeEEEEEcCCCCHHHHhhcc--------------------ccchHHHHHH
Q 015902           73 KIPRLAYLISGSTGDGESLKRTLKALYHPRNQYAVHLDLEAPVEERLELA--------------------RGPTMVTNTL  132 (398)
Q Consensus        73 ~~~kiAYLIlahk~d~~~l~rLl~aLy~p~n~y~IHvD~ks~~~~r~~l~--------------------gg~S~V~AtL  132 (398)
                      .+|||||+|++|+ |+++++||++++|||+|+||||+|+|++..++..+.                    ||+|||+|+|
T Consensus        82 ~~~kiAflil~h~-d~~~l~rll~~ly~p~n~y~IHvD~ks~~~~~~~~~~~~~~f~NV~v~~~~~~v~WGg~S~v~A~l  160 (391)
T 2gak_A           82 VGFPIAYSIVVHH-KIEMLDRLLRAIYMPQNFYCIHVDRKAEESFLAAVQGIASCFDNVFVASQLESVVYASWTRVKADL  160 (391)
T ss_dssp             HTSCEEEEEEECS-CHHHHHHHHHHHCCTTSEEEEEECTTSCHHHHHHHHHHHHTCTTEEECSSCCCCCTTSHHHHHHHH
T ss_pred             cCCCEEEEEEecC-CHHHHHHHHHHHhCCCCeEEEEEeCCCCHHHHHHHHHHHhcCCCEEEeccCcccccCCchHHHHHH
Confidence            3599999999998 899999999999999999999999999876432210                    9999999999


Q ss_pred             HHHHHHHhcCCCccEEEEecCCcccccChhHHHHHhccCCCCcceEeeccCCCcceeeccc--ceecCCCcccccccccc
Q 015902          133 HAAAILFKEGGDWDWFINLSASDYPLVTQDDLLHVLSTIPRNLNFIEHTSDIGWKEYQRAK--PVIIDPGLYTVQKSDVF  210 (398)
Q Consensus       133 ~~~~~lL~~~~~wdyfi~LSg~DyPLkt~~eI~~~fs~~~~g~nFIe~~~~~~wk~~~r~~--~~i~dpgly~~~k~~~~  210 (398)
                      +||+.||+...+|+|||||||+||||+|+++|+++|+.+ +|+|||++.+..+|++. |++  +.+.+++++       .
T Consensus       161 ~ll~~aL~~~~~w~yfilLSgsD~PLkt~~~i~~~l~~~-~~~nFIe~~~~~~~~~~-R~~~~~~~~~~~l~-------~  231 (391)
T 2gak_A          161 NCMKDLYRMNANWKYLINLCGMDFPIKTNLEIVRKLKCS-TGENNLETEKMPPNKEE-RWKKRYAVVDGKLT-------N  231 (391)
T ss_dssp             HHHHHHHHHCSCCCEEEEEETTCEESSCHHHHHHHHHHT-TTCCBCCBEECCGGGSH-HHHEEEEEETTEEE-------E
T ss_pred             HHHHHHHhcCCCCCEEEEecCCCccccCHHHHHHHHHhc-CCCceeeccCCCccccc-ceEeeeecccccee-------e
Confidence            999999997779999999999999999999999999875 78999999887788654 322  223344332       2


Q ss_pred             cccccCCCCCCceeeccceeEEecHHHHHHhhhccCCcHHHHHHHhcCCCCCCChhhhhhhccc---------ccccccc
Q 015902          211 WVPEKRNVPTAYKLFTGSAWMMLSRPFIEFCLWGWDNLPRIVLMYYANFLSSPEGYFHTVICNA---------EEFRNTT  281 (398)
Q Consensus       211 ~~~~kR~~P~~~~ly~GSqW~~LtR~fveyil~~~d~lp~~ll~yf~~t~~pDE~fFqTll~Ns---------~~f~~~~  281 (398)
                      +..++|.+|.++++|+|||||+|||+||+||++  |++++.+++||+++++|||+||||++.+.         ..|++++
T Consensus       232 ~~~~k~~~P~~~~~~~GSqW~~LtR~~v~~vl~--d~~~~~~~~~~k~t~~pDE~ffqTll~~~~~pg~~~~~~~~~~~~  309 (391)
T 2gak_A          232 TGIVKAPPPLKTPLFSGSAYFVVTREYVGYVLE--NENIQKLMEWAQDTYSPDEFLWATIQRIPEVPGSFPSSNKYDLSD  309 (391)
T ss_dssp             EEEECCCCSCSSCCEECCSCCEEEHHHHHHHHH--CHHHHHHHHHHTTSSSGGGTHHHHHTTSTTSTTCCCSSGGGCBCT
T ss_pred             ecccccCCccccceecccceeEecHHHHHHHHh--CCcHHHHHHHHcCCcCCchhHHHHHhhccCCCCcccccccccccc
Confidence            234567789899999999999999999999998  56678899999999999999999998764         2355667


Q ss_pred             ccCceeEEecCCCCC------CCCc----------cCCHhhHHHHhcCCCcEEecCCC--ChhHHHHHHHHHhCCCCC
Q 015902          282 VNHDLHFISWDNPPK------QHPH----------FLNVDDYQRMVDSNAPFARKFGR--NEPVLDKIDSELLGRIAD  341 (398)
Q Consensus       282 vn~~LRyi~W~~~~~------~~P~----------~l~~~D~~~l~~S~~lFARKF~~--d~~vld~Id~~ll~r~~~  341 (398)
                      +++++|||+|++..+      .||.          +++.+|+++|.+|+++|||||++  |++|++|||+.|.+|+..
T Consensus       310 ~~~~lr~i~W~~~~g~~~~G~p~p~c~~~~~~~~C~~~~~Dl~~l~~s~~lFARKF~~~~d~~~l~~l~~~l~~r~~~  387 (391)
T 2gak_A          310 MNAIARFVKWQYFEGDVSNGAPYPPCSGVHVRSVCVFGAGDLSWMLRQHHLFANKFDMDVDPFAIQCLDEHLRRKALE  387 (391)
T ss_dssp             TTSSSEEECBTTTCSCGGGTCSSCCCSSEEETTEEECCGGGHHHHTTSCCSEEECCCTTTCHHHHHHHHHHHHHHHHC
T ss_pred             ccCceEEEEecccCCccccCCCCCCCccceecceeeecHHHHHHHHhCCCceEEccCCccCHHHHHHHHHHHhhhhhc
Confidence            899999999984221      1443          79999999999999999999997  689999999999888654

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00