Citrus Sinensis ID: 015905

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
Protein Sequence
MNLNANMLQAQRSRFNSKTFSLTISKHNIPVLPRNRSLSFSTSWCPVHFRSISHSNLKFGSSRNFVTNSVSENISGPFDQDPDRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE
Secondary Structure (PSIPRED)
ccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHccEEEccHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEcccccHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHcccccHHHHHHccccEEccccEEEEccccEEcccccccccccEEcccccEEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHcEEEEccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHEEEEEEEEccccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHccEEEEEEccccHHHHHHHHHHHccccHHHcHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MNLNANMLQAQRsrfnsktfsltiskhnipvlprnrslsfstswcpvhfrsishsnlkfgssrnfvtnsvsenisgpfdqdpdrnyvtesnqVLNQEFSLVNILKqsnsflphVVLGSTMlalvfppsftwftaSEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTIsvsvfglptpigAGIMLVSCVsgaqlsnyatfltdpplaplsIVMTSLSTATAVFVTPLLSLLLIgkrlpvdvkgMVSSILQIVVVPIAaglllnrffpricnairpflpplsVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRffqdplvsvppAISTVIMSLMGFFLVMLWAKKSE
Flexible Loop (DISEMBL)
MNLNANMLQAQRSRFNSKTFSLTiskhnipvlprnrSLSFSTSWCPVHFRSISHSNLKFGSSRNFVTNSVSENisgpfdqdpdRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE
Low Complexity Region (SEG)
MNLNANMLQAQRSRFNSKTFSLTISKHNIPVLPRNRSLSFSTSWCPVHFRSISHSNLKFGSSRNFVTNSVSENISGPFDQDPDRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGltillliitFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE
Disordered region (IsUnstruct)
*******************FSLTISKHNIPVLPRNRSLSFSTSWCPVHFRSISHSNLKFG******************************NQVLNQEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWA****
Disordered Region (DISOPRED)
*********AQRSRFNSKTFSLTISKHNIPVLP**RSLS*********************************************************EFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKS*
Disordered Region (DISEMBL)
MNLNANMLQAQRSRFNSKTFSLTISKHNIPVLPRNRSLSFSTSWCPVHFRSISHSNLKFGSSRNFVTNSVSENISGPFDQDPDRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE
Disordered Region (DISPRO)
MNLNANMLQAQRSRFNSKTFSLTISKHNIPVLPRNRSLSFSTSWCPVHFRSISHSNLKFGSSRNFVTNSVSENISGPFDQD*DRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKK**
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHHiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MNLNANMLQAQRSRFNSKTFSLTISKHNIPVLPRNRSLSFSTSWCPVHFRSISHSNLKFGSSRNFVTNSVSENISGPFDQDPDRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	398	2.2.26 [Sep-21-2011]
Q8VYY4	409	Probable sodium/metabolit	yes	no	0.841	0.819	0.671	1e-131
Q650U0	401	Probable sodium/metabolit	yes	no	0.834	0.827	0.653	1e-127
B8BDK4	401	Probable sodium/metabolit	N/A	no	0.834	0.827	0.653	1e-127
F4JPW1	407	Probable sodium/metabolit	no	no	0.927	0.906	0.611	1e-126
Q6K739	423	Probable sodium/metabolit	no	no	0.633	0.595	0.446	4e-50
Q8RXE8	431	Probable sodium/metabolit	no	no	0.703	0.649	0.392	2e-48
Q1EBV7	409	Sodium/pyruvate cotranspo	no	no	0.854	0.831	0.294	1e-36
Q93YR2	401	Probable sodium/metabolit	no	no	0.854	0.847	0.294	8e-35
Q5VRB2	419	Probable sodium/metabolit	no	no	0.726	0.689	0.313	3e-33
Q7XVB3	406	Probable sodium/metabolit	no	no	0.683	0.669	0.323	2e-28

>sp|Q8VYY4|BASS6_ARATH Probable sodium/metabolite cotransporter BASS6, chloroplastic OS=Arabidopsis thaliana GN=BASS6 PE=2 SV=1

 Score =  467 bits (1201), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 241/359 (67%), Positives = 284/359 (79%), Gaps = 24/359 (6%)

Query: 58  KFGSSRNFVTNSVSENISGPFDQDPDRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLG 117
           + G SRN      S+N S     DP      +  +V+ +  S+V+ +K++NS LPHVVL 
Sbjct: 54  QVGGSRNLWRRYASDNFSE-MGLDPG----ADPFKVIEKP-SIVDRMKKANSILPHVVLA 107

Query: 118 STMLALVFPPSFTWFTA------------------SEKDFIEAFKRPAAIFAGYVGQFVV 159
           ST+LAL++PPSFTWFT+                  +EKDF+EAFKRP AI  GYVGQ++V
Sbjct: 108 STILALIYPPSFTWFTSRYFVPALGFLMFAVGINSNEKDFLEAFKRPKAILLGYVGQYLV 167

Query: 160 KPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLS 219
           KP+LG+IFG  +VS+F LPTPIGAGIMLVSCVSGAQLSNYATFLTDP LAPLSIVMTSLS
Sbjct: 168 KPVLGFIFGLAAVSLFQLPTPIGAGIMLVSCVSGAQLSNYATFLTDPALAPLSIVMTSLS 227

Query: 220 TATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFL 279
           TATAV VTP+LSLLLIGK+LPVDVKGM+SSILQ+V+ PIAAGLLLN+ FP++ NAIRPFL
Sbjct: 228 TATAVLVTPMLSLLLIGKKLPVDVKGMISSILQVVIAPIAAGLLLNKLFPKVSNAIRPFL 287

Query: 280 PPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDV 339
           P LSVL TACCVGAPLA+NI SVMSPFG TILLL+  FHLSAF+AGY +TG  F  A D 
Sbjct: 288 PILSVLDTACCVGAPLALNINSVMSPFGATILLLVTMFHLSAFLAGYFLTGSVFRNAPDA 347

Query: 340 KALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE 398
           KA+QRTLSYETGMQSSLLALALA +FFQDPLV +PPAISTV+MSLMGF LV++W+K+  
Sbjct: 348 KAMQRTLSYETGMQSSLLALALATKFFQDPLVGIPPAISTVVMSLMGFTLVLIWSKEKS 406

May function as sodium-coupled metabolite transporter across the chloroplast envelope.
Arabidopsis thaliana (taxid: 3702)

>sp|Q650U0|BASS5_ORYSJ Probable sodium/metabolite cotransporter BASS5, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS5 PE=2 SV=1

 Score =  454 bits (1167), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 230/352 (65%), Positives = 280/352 (79%), Gaps = 20/352 (5%)

Query: 67  TNSVSENISGPFDQD--PDRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLGSTMLALV 124
           +  V  + SG F++D   D + +     V   +  L+ ILK +N+ +PHVVLGST+LALV
Sbjct: 49  SGRVWASASGSFEKDRIGDDDVLASPQIVEESKVDLLKILKSANTIIPHVVLGSTILALV 108

Query: 125 FPPSFTWFT------------------ASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYI 166
           +PPSFTWFT                  +S KDFIEA +RP AI AGYVGQF++KP LG++
Sbjct: 109 YPPSFTWFTTRYYAPALGFLMFAVGVNSSVKDFIEAIQRPDAIAAGYVGQFIIKPFLGFL 168

Query: 167 FGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFV 226
           FGT++V++F LPT +GAGIMLVSCVSGAQLSNYATFLTDP +APLSIVMTSLSTATAVFV
Sbjct: 169 FGTLAVTIFNLPTALGAGIMLVSCVSGAQLSNYATFLTDPHMAPLSIVMTSLSTATAVFV 228

Query: 227 TPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLV 286
           TP LS  LIGK+LPVDVKGM+SSI+QIVV PIAAGLLLNR+ PR+C+AI+PFLPPLSV V
Sbjct: 229 TPTLSYFLIGKKLPVDVKGMMSSIVQIVVAPIAAGLLLNRYLPRLCSAIQPFLPPLSVFV 288

Query: 287 TACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTL 346
           TA CVG+PLAINI++V+SPFGL  +LL+  FH S+F+AGY + G  F E+ DVKALQRT+
Sbjct: 289 TALCVGSPLAINIKAVLSPFGLATVLLLFAFHTSSFIAGYHLAGTWFRESADVKALQRTV 348

Query: 347 SYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE 398
           S+ETGMQSSLLALALANRFF DPLV VPPAIS V+MSLMGF LVM+W+K+++
Sbjct: 349 SFETGMQSSLLALALANRFFPDPLVGVPPAISVVLMSLMGFALVMVWSKRTK 400

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|B8BDK4|BASS5_ORYSI Probable sodium/metabolite cotransporter BASS5, chloroplastic OS=Oryza sativa subsp. indica GN=BASS5 PE=3 SV=1

 Score =  454 bits (1167), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 230/352 (65%), Positives = 280/352 (79%), Gaps = 20/352 (5%)

Query: 67  TNSVSENISGPFDQD--PDRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLGSTMLALV 124
           +  V  + SG F++D   D + +     V   +  L+ ILK +N+ +PHVVLGST+LALV
Sbjct: 49  SGRVWASASGSFEKDRIGDDDVLASPQIVEESKVDLLKILKSANTIIPHVVLGSTILALV 108

Query: 125 FPPSFTWFT------------------ASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYI 166
           +PPSFTWFT                  +S KDFIEA +RP AI AGYVGQF++KP LG++
Sbjct: 109 YPPSFTWFTTRYYAPALGFLMFAVGVNSSVKDFIEAIQRPDAIAAGYVGQFIIKPFLGFL 168

Query: 167 FGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFV 226
           FGT++V++F LPT +GAGIMLVSCVSGAQLSNYATFLTDP +APLSIVMTSLSTATAVFV
Sbjct: 169 FGTLAVTIFNLPTALGAGIMLVSCVSGAQLSNYATFLTDPHMAPLSIVMTSLSTATAVFV 228

Query: 227 TPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLV 286
           TP LS  LIGK+LPVDVKGM+SSI+QIVV PIAAGLLLNR+ PR+C+AI+PFLPPLSV V
Sbjct: 229 TPTLSYFLIGKKLPVDVKGMMSSIVQIVVAPIAAGLLLNRYLPRLCSAIQPFLPPLSVFV 288

Query: 287 TACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTL 346
           TA CVG+PLAINI++V+SPFGL  +LL+  FH S+F+AGY + G  F E+ DVKALQRT+
Sbjct: 289 TALCVGSPLAINIKAVLSPFGLATVLLLFAFHTSSFIAGYHLAGTWFRESADVKALQRTV 348

Query: 347 SYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE 398
           S+ETGMQSSLLALALANRFF DPLV VPPAIS V+MSLMGF LVM+W+K+++
Sbjct: 349 SFETGMQSSLLALALANRFFPDPLVGVPPAISVVLMSLMGFALVMVWSKRTK 400

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. indica (taxid: 39946)

>sp|F4JPW1|BASS5_ARATH Probable sodium/metabolite cotransporter BASS5, chloroplastic OS=Arabidopsis thaliana GN=BASS5 PE=2 SV=1

 Score =  452 bits (1164), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 244/399 (61%), Positives = 304/399 (76%), Gaps = 30/399 (7%)

Query: 25  SKHNIPVLPRNRS--LSFSTSWCPVHFRSISHSNLKFGSSRNF--VTNSVSENISGPFDQ 80
           S+H + + PRN S  L+F ++    +F   S S+L    S +F   +N +S+N       
Sbjct: 14  SQHRL-LQPRNYSYALAFHSTRRVANFPRNSFSSLG-SCSVDFPLRSNPISQNSK---SI 68

Query: 81  DPDRNYVTES--NQVLNQEFS-LVNILKQSNSFLPHVVLGSTMLALVFPPSFTWF----- 132
            P R YV+ES  N++ +++ S ++  LKQ+ SF+PH +L ST+LALV+PPSFTWF     
Sbjct: 69  HPWRRYVSESDSNELYHKKVSSIMETLKQAYSFIPHGILLSTILALVYPPSFTWFKPRYF 128

Query: 133 -------------TASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPT 179
                         ++E+DF+EA KRP AIFAGY+GQ+++KP+LGYIFG I+VS+F LPT
Sbjct: 129 VPGLGFMMFAVGINSNERDFLEALKRPDAIFAGYIGQYLIKPLLGYIFGVIAVSLFNLPT 188

Query: 180 PIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRL 239
            IGAGIMLVSCVSGAQLSNY TFLTDP LA LSIVMTS+STATAV VTP+LSLLLIGK+L
Sbjct: 189 SIGAGIMLVSCVSGAQLSNYTTFLTDPSLAALSIVMTSISTATAVLVTPMLSLLLIGKKL 248

Query: 240 PVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINI 299
           PVDV GM+SSILQ+V+ PIAAGLLLNR FPR+ NAI+PFLP L+V+  +CC+GAPLA+NI
Sbjct: 249 PVDVFGMISSILQVVITPIAAGLLLNRLFPRLSNAIKPFLPALTVIDMSCCIGAPLALNI 308

Query: 300 ESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLAL 359
           +S++SPFG TIL L+ITFHL AFVAGY  TG  F++A DVKALQRT+SYETGMQSSLLAL
Sbjct: 309 DSILSPFGATILFLVITFHLLAFVAGYFFTGFFFSKAPDVKALQRTISYETGMQSSLLAL 368

Query: 360 ALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE 398
           ALA +FFQDPLV VPPAISTV+MSLMG  LV +W  + E
Sbjct: 369 ALATKFFQDPLVGVPPAISTVVMSLMGVSLVTIWKNRKE 407

Plastidic transporter involved in the biosynthesis of aliphatic glucosinolates by translocating the biosynthetic intermediates of Met-derived glucosinolates across chloroplast membranes. Transports short chain (C2) alpha-keto acids, such as 4-methylsulfanyl-2-oxobutanoic acid, from the cytosol to the chloroplast where they are subjected to chain elongation cycles. Functions also in the transport of chain-elongated (C3 to C8) Met derivatives from the chloroplast to the cytosol. Does not seem to be involved in the transport of indole-derived glucosinolates.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6K739|BASS3_ORYSJ Probable sodium/metabolite cotransporter BASS3, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS3 PE=2 SV=1

 Score =  199 bits (505), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 116/260 (44%), Positives = 166/260 (63%), Gaps = 8/260 (3%)

Query: 135 SEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGA 194
           S  DF  AFKRP  +  GY+ Q++VKP++G +        FG+P+   AG +L  CVSGA
Sbjct: 150 SIDDFALAFKRPVPLTIGYMAQYIVKPLMGVLIA----RAFGMPSAFFAGFVLTCCVSGA 205

Query: 195 QLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIV 254
           QLS+YA+FL+   +A LSI++TS ST ++V VTP+L+ LLIG  +PVD   M  SILQ+V
Sbjct: 206 QLSSYASFLSKGDVA-LSILLTSCSTISSVVVTPVLTGLLIGSVVPVDGIAMAKSILQVV 264

Query: 255 VVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLI 314
           +VP+  GLLLN +   + N I+P +P +++L T+ C+G+PLAIN   ++S  G  +LL I
Sbjct: 265 LVPVTLGLLLNTYAKAVVNVIQPVMPFVAMLCTSLCIGSPLAINRSKILSSEGFLLLLPI 324

Query: 315 ITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVP 374
           +TFH++AF+ GY ++ L      +   + RT+S  TGMQSS LA  LA +F      +VP
Sbjct: 325 VTFHIAAFIVGYWISKLPMLRQEE--PVCRTISVCTGMQSSTLAGLLATQFLGSSQ-AVP 381

Query: 375 PAISTVIMSLMGFFLVMLWA 394
            A S VIM++ G  L   W 
Sbjct: 382 AACSVVIMAIFGLTLASYWG 401

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8RXE8|BASS3_ARATH Probable sodium/metabolite cotransporter BASS3, chloroplastic OS=Arabidopsis thaliana GN=BASS3 PE=2 SV=1

 Score =  193 bits (491), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 120/306 (39%), Positives = 179/306 (58%), Gaps = 26/306 (8%)

Query: 108 NSFLPHVVLGSTMLALVFPPSFTWFTA------------------SEKDFIEAFKRPAAI 149
           ++ LP VV  + + AL +PPSFTW +                   S  DF  AFKRP  +
Sbjct: 112 SALLPFVVALTAVAALSYPPSFTWVSKDLYAPALGGIMLSIGIQLSVDDFALAFKRPVPL 171

Query: 150 FAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLA 209
             G+V Q+V+KP+LG +      + FG+P    AG +L  CV+GAQLS+YA+ L+   +A
Sbjct: 172 SVGFVAQYVLKPLLGVLVA----NAFGMPRTFYAGFILTCCVAGAQLSSYASSLSKADVA 227

Query: 210 PLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFP 269
            +SI++TS +T  +V  TPLLS LLIG  +PVD   M  SILQ+V+VPI  GL+LN +  
Sbjct: 228 -MSILLTSSTTIASVIFTPLLSGLLIGSVVPVDAVAMSKSILQVVLVPITLGLVLNTYAK 286

Query: 270 RICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVT 329
            +   ++P +P ++++ T+ C+G+PL+IN   ++S  GL +++ I+TFH  AF  GY  +
Sbjct: 287 PVVTLLQPVMPFVAMVCTSLCIGSPLSINRSQILSAEGLGLIVPIVTFHAVAFALGYWFS 346

Query: 330 GLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFL 389
            +      +   + RT+S  TGMQSS LA  LA++F      +VP A S V+M++MG  L
Sbjct: 347 KIPGLRQEE--EVSRTISLCTGMQSSTLAGLLASQFLGSSQ-AVPAACSVVVMAIMGLCL 403

Query: 390 VMLWAK 395
              W  
Sbjct: 404 ASFWGN 409

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Arabidopsis thaliana (taxid: 3702)

>sp|Q1EBV7|BASS2_ARATH Sodium/pyruvate cotransporter BASS2, chloroplastic OS=Arabidopsis thaliana GN=BASS2 PE=2 SV=1

 Score =  154 bits (388), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 121/411 (29%), Positives = 196/411 (47%), Gaps = 71/411 (17%)

Query: 31  VLPRNRSLS---FSTSWCPVHFRSISHSN---------------------------LKFG 60
           +LP +  LS    +TSW P   R+ +H +                           L+  
Sbjct: 7   ILPTDGRLSQCRINTSWVPSTTRTQTHLDFPKLVSVSNSGISLRIQNSKPISPVFALEAT 66

Query: 61  SSRNFVTNSVSENISGPFDQDPDRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLGSTM 120
           SSR  V  + +  +SG   +   +         L+Q   ++ +L    +  P  V+  T+
Sbjct: 67  SSRRVVCKAAA-GVSGDLPESTPKE--------LSQYEKIIELL---TTLFPLWVILGTL 114

Query: 121 LALVFPPSFTWF------------------TASEKDFIEAFKRPAAIFAGYVGQFVVKPI 162
           + +  P   TW                   T + +DF    + P  +  G++ Q+++KPI
Sbjct: 115 VGIFKPSLVTWLETDLFTLGLGFLMLSMGLTLTFEDFRRCLRNPWTVGVGFLAQYMIKPI 174

Query: 163 LGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTAT 222
           LG++          L  P+  G++LVSC  G Q SN AT+++   +A LS++MT+ ST  
Sbjct: 175 LGFLIAM----TLKLSAPLATGLILVSCCPGGQASNVATYISKGNVA-LSVLMTTCSTIG 229

Query: 223 AVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPL 282
           A+ +TPLL+ LL G+ +PVD  G+  S  Q+V+VP   G+L N FFP+  + I    P +
Sbjct: 230 AIIMTPLLTKLLAGQLVPVDAAGLALSTFQVVLVPTIIGVLANEFFPKFTSKIITVTPLI 289

Query: 283 SVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKAL 342
            V++T     +P+   +  V+   G  ++L +   H +AF  GY ++  +F E+      
Sbjct: 290 GVILTTLLCASPIG-QVADVLKTQGAQLILPVALLHAAAFAIGYWISKFSFGESTS---- 344

Query: 343 QRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLW 393
            RT+S E GMQSS L   LA + F +PLV+VP A+S V M+L G  L + W
Sbjct: 345 -RTISIECGMQSSALGFLLAQKHFTNPLVAVPSAVSVVCMALGGSGLAVFW 394

Sodium-coupled metabolite transporter that plays a crucial role in pyruvate transport across the chloroplast envelope. Is required for sodium-coupled pyruvate import into plastids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93YR2|BASS1_ARATH Probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Arabidopsis thaliana GN=BASS1 PE=2 SV=1

 Score =  148 bits (373), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 112/380 (29%), Positives = 185/380 (48%), Gaps = 40/380 (10%)

Query: 46  PVHFRSISHSNLKFGSSRNFVTNSVSENI-----SGPFDQDP-----DRNYVTESNQVLN 95
           P+H R+IS S L +  S   ++      +        FD  P       +  TE  +   
Sbjct: 28  PLHLRTISCSRLSYSPSSREISLKTQSTVPISCRRSRFDFVPRCGISSNDLPTEKKKSFG 87

Query: 96  QEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTW------------------FTASEK 137
           +    V     S +F   V LG  +L L+ P +F W                   T +  
Sbjct: 88  EWVEFVG-EAVSTAFPIWVSLG-CLLGLMRPSTFNWVTPNWTIVGLTITMLGMGMTLTLD 145

Query: 138 DFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLS 197
           D   A   P  +FAG++ Q+ V P+  +    +      LP    AG++LV C  G   S
Sbjct: 146 DLRGALSMPKELFAGFLLQYSVMPLSAFFVSKL----LNLPPHYAAGLILVGCCPGGTAS 201

Query: 198 NYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVP 257
           N  T++    +A LS++MT+ ST +AV +TPLL+  L  + + VD  G++ S LQ+V++P
Sbjct: 202 NIVTYIARGNVA-LSVLMTAASTVSAVIMTPLLTAKLAKQYITVDALGLLMSTLQVVLLP 260

Query: 258 IAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITF 317
           + AG  LN++F ++   + P +PP++V   A   G  +  N  +++   G  ++L     
Sbjct: 261 VLAGAFLNQYFKKLVKFVSPVMPPIAVGTVAILCGYAIGQNASAILMS-GKQVVLASCLL 319

Query: 318 HLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAI 377
           H+S F+ GY+ + +      DV A  RT+S E GMQ+S+L + LA + F +PL +VP A+
Sbjct: 320 HISGFLFGYLFSRIL---GIDV-ASSRTISIEVGMQNSVLGVVLATQHFGNPLTAVPCAV 375

Query: 378 STVIMSLMGFFLVMLWAKKS 397
           S+V  S++G  L  +W + +
Sbjct: 376 SSVCHSILGSVLAGIWRRSA 395

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Arabidopsis thaliana (taxid: 3702)

>sp|Q5VRB2|BASS2_ORYSJ Probable sodium/metabolite cotransporter BASS2, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS2 PE=2 SV=1

 Score =  143 bits (360), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 101/322 (31%), Positives = 167/322 (51%), Gaps = 33/322 (10%)

Query: 95  NQEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWF------------------TASE 136
           NQ   +V +L    +  P  V+  T++ +  P   TW                   T + 
Sbjct: 101 NQYEKIVELL---TTLFPVWVILGTIIGIYKPSMVTWLETDLFTVGLGFLMLSMGLTLTF 157

Query: 137 KDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQL 196
           +DF    + P  +  G++ Q+++KP+LG+           L  P+  G++LVSC  G Q 
Sbjct: 158 EDFRRCMRNPWTVGVGFLAQYLIKPMLGFAIAM----TLKLSAPLATGLILVSCCPGGQA 213

Query: 197 SNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVV 256
           SN AT+++   +A LS++MT+ ST  A+ +TPLL+ LL G+ +PVD  G+  S  Q+V++
Sbjct: 214 SNVATYISKGNVA-LSVLMTTCSTIGAIVMTPLLTKLLAGQLVPVDAAGLAISTFQVVLL 272

Query: 257 PIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIIT 316
           P   G+L + +FP+    I    P + VL+T     +P+   +  V+   G  +++ +  
Sbjct: 273 PTIVGVLAHEYFPKFTERIISITPLIGVLLTTLLCASPIG-QVSEVLKAQGGQLIIPVAL 331

Query: 317 FHLSAFVAGYVVTGL-AFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPP 375
            H++AF  GY ++ + +F E+       RT+S E GMQSS L   LA + F +PLV+VP 
Sbjct: 332 LHVAAFALGYWLSKVSSFGESTS-----RTISIECGMQSSALGFLLAQKHFTNPLVAVPS 386

Query: 376 AISTVIMSLMGFFLVMLWAKKS 397
           A+S V M+L G  L + W  + 
Sbjct: 387 AVSVVCMALGGSALAVFWRNRG 408

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XVB3|BASS1_ORYSJ Probable sodium/metabolite cotransporter BASS1, chloroplastic OS=Oryza sativa subsp. japonica GN=BASS1 PE=2 SV=2

 Score =  127 bits (319), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/300 (32%), Positives = 156/300 (52%), Gaps = 28/300 (9%)

Query: 112 PHVVLGSTMLALVFPPSFTW------------------FTASEKDFIEAFKRPAAIFAGY 153
           P  V  +  +AL  PP+F W                   T +  D   A   P  + +G+
Sbjct: 107 PVWVASACAVALWRPPAFLWVSPMAQIVGISFTMLGMGMTLTLDDLKTALLMPKELASGF 166

Query: 154 VGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSI 213
           + Q+ V P+ G++   +      LP+   AG++LVSC  G   SN  T+L    +A LS+
Sbjct: 167 LLQYSVMPLSGFLISKL----LNLPSYYAAGLILVSCCPGGTASNIVTYLARGNVA-LSV 221

Query: 214 VMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICN 273
           +MT+ ST  A F+TPLL+  L G+ + VD  G+  S  Q+V+ P+  G LLN++   +  
Sbjct: 222 LMTAASTFAAAFLTPLLTSKLAGQYVAVDPMGLFVSTSQVVLAPVLLGALLNQYCNGLVQ 281

Query: 274 AIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAF 333
            + P +P ++V   A   G  +A N  +++S  GL +++ +   H S F  GYV   L+ 
Sbjct: 282 LVSPLMPFIAVATVAVLCGNAIAQNASAILSS-GLQVVMSVCWLHASGFFFGYV---LSR 337

Query: 334 AEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLW 393
               D+ +  RT+S E GMQ+S+L + LA++ F +PL +VP A+S+V  S+ G  L  +W
Sbjct: 338 TIGIDISS-SRTISIEVGMQNSVLGVVLASKHFGNPLTAVPCAVSSVCHSVYGSLLAGIW 396

May function as sodium-coupled metabolite transporter across the chloroplast envelope.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	398
255537151	413	sodium-bile acid cotransporter, putative	0.987	0.951	0.690	1e-150
449460499	420	PREDICTED: probable sodium/metabolite co	0.942	0.892	0.637	1e-139
449494361	420	PREDICTED: probable sodium/metabolite co	0.942	0.892	0.634	1e-139
224074737	317	bile acid:Na+ symporter family protein [	0.748	0.940	0.803	1e-138
359497736	356	PREDICTED: uncharacterized sodium-depend	0.826	0.924	0.709	1e-133
147773542	352	hypothetical protein VITISV_011475 [Viti	0.758	0.857	0.756	1e-133
297799724	406	bile acid:sodium symporter family protei	0.831	0.815	0.684	1e-130
18416020	409	putative sodium-bile acid cotransporter	0.841	0.819	0.671	1e-129
2827561	460	predicted protein [Arabidopsis thaliana]	0.851	0.736	0.661	1e-127
297809511	409	bile acid:sodium symporter family protei	0.937	0.911	0.586	1e-125

>gi|255537151|ref|XP_002509642.1| sodium-bile acid cotransporter, putative [Ricinus communis] gi|223549541|gb|EEF51029.1| sodium-bile acid cotransporter, putative [Ricinus communis]

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 288/417 (69%), Positives = 327/417 (78%), Gaps = 24/417 (5%)

Query: 1   MNLNANMLQAQRSRFNSKTFSLTISKHNIPVLPRNRSLSFSTSWCPVHFRSISHSNLKFG 60
           M +NA   Q QR       F +  + H +P       ++    +C   F  +S     F 
Sbjct: 1   MIVNAKQWQIQRPHI--AQFQIHNNSH-VPNFYELHMIAAFAVYC-YFFSRVSLCGF-FT 55

Query: 61  SSRNFVTNSVSENISGPFDQDPDRNYVTESNQVLNQE-FSLVNILKQSNSFLPHVVLGST 119
           S++   +  +SE +S  FDQDP  N V + N++  QE FSL+NILK+SNS LPHVVL ST
Sbjct: 56  STKTQFSICLSEKLSDSFDQDPSLNIVNKHNKIFEQEEFSLINILKKSNSLLPHVVLAST 115

Query: 120 MLALVFPPSFTWFT------------------ASEKDFIEAFKRPAAIFAGYVGQFVVKP 161
           +LALV+PPSFTWFT                  +SEKDF+EAFKRP+AIFAGY+GQF+VKP
Sbjct: 116 LLALVYPPSFTWFTTRYYAPALGFLMFAVGVNSSEKDFVEAFKRPSAIFAGYLGQFIVKP 175

Query: 162 ILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTA 221
           ILGYIFG ISVSVF LPTPIGAGIMLVSCVSGAQLSNYATFLTDPP+APLSIVMTSLSTA
Sbjct: 176 ILGYIFGIISVSVFNLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPMAPLSIVMTSLSTA 235

Query: 222 TAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPP 281
           TAVFVTPLLSLLLIGKRLPVDV GMVSSILQIVV PIAAGLLLNRF P I NAIRPFLPP
Sbjct: 236 TAVFVTPLLSLLLIGKRLPVDVTGMVSSILQIVVAPIAAGLLLNRFLPWISNAIRPFLPP 295

Query: 282 LSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKA 341
           LSVLVTACCVGAPLAIN++SV+SPFG TIL LII+FHL AFVAGYV+TGL F +A D+KA
Sbjct: 296 LSVLVTACCVGAPLAINVKSVISPFGATILSLIISFHLLAFVAGYVLTGLVFPKAPDLKA 355

Query: 342 LQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE 398
           LQRT+S+ETGMQSSLLALALANRFF+DPLV+VPPAISTV+MSLMGF LVM+WAKK E
Sbjct: 356 LQRTMSFETGMQSSLLALALANRFFRDPLVAVPPAISTVMMSLMGFTLVMVWAKKKE 412

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460499|ref|XP_004147983.1| PREDICTED: probable sodium/metabolite cotransporter BASS6, chloroplastic-like [Cucumis sativus]

 Score =  502 bits (1292), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 272/427 (63%), Positives = 311/427 (72%), Gaps = 52/427 (12%)

Query: 3   LNANMLQAQRSRFNSKTFSLTISKHNIPVLPRNRSLSFSTSWCPVHFRSISHSNLKFGSS 62
           L  N++Q  R   +   F  +IS  N                     +SIS    +F   
Sbjct: 8   LGKNLMQIHRLHRSQLDFPTSISSRN---------------------QSISGLFHRFPPQ 46

Query: 63  RNFVTNSVSENISGPFDQDPDRNYV------------TESNQVLNQE-FSLVNILKQSNS 109
            N V+   S     P+  D  R  +                 +++Q+  + V ILKQSNS
Sbjct: 47  INGVSVRCSNTFHSPYPLDVYRTVLLNLCGWIVILLAVRQRLIIDQKKTTFVEILKQSNS 106

Query: 110 FLPHVVLGSTMLALVFPPSFTWFTA------------------SEKDFIEAFKRPAAIFA 151
            LPHVVL ST++AL+FPPSF WFT+                  SEKDF+EAFK+PAAIFA
Sbjct: 107 LLPHVVLASTLVALIFPPSFAWFTSRYYAPALGFLMFAVGVNSSEKDFLEAFKQPAAIFA 166

Query: 152 GYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPL 211
           GYVGQF VKP+LGY+FGTI+V++FGLPT IGAGIMLVSCVSGAQLS+YATFLTDP LAPL
Sbjct: 167 GYVGQFFVKPLLGYLFGTIAVTLFGLPTAIGAGIMLVSCVSGAQLSSYATFLTDPSLAPL 226

Query: 212 SIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRI 271
           S+VMTSLSTATAV VTP LSLLLIGKRLPVDVKGM+SSI QIVV PIAAGLLLNRFFPRI
Sbjct: 227 SVVMTSLSTATAVVVTPFLSLLLIGKRLPVDVKGMISSITQIVVAPIAAGLLLNRFFPRI 286

Query: 272 CNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGL 331
           C AIRPFLPPLSVLVTACCVGAPLAINI +V+SPFGL+ILLLI+ FHLSAF+AGY +TGL
Sbjct: 287 CEAIRPFLPPLSVLVTACCVGAPLAININAVISPFGLSILLLIVAFHLSAFIAGYSLTGL 346

Query: 332 AFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVM 391
           AF  + DVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTV+MSLMGF LVM
Sbjct: 347 AFHGSPDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVMMSLMGFSLVM 406

Query: 392 LWAKKSE 398
           +W+K+ E
Sbjct: 407 IWSKRKE 413

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449494361|ref|XP_004159525.1| PREDICTED: probable sodium/metabolite cotransporter BASS6, chloroplastic-like [Cucumis sativus]

 Score =  500 bits (1288), Expect = e-139,   Method: Compositional matrix adjust.
 Identities = 271/427 (63%), Positives = 310/427 (72%), Gaps = 52/427 (12%)

Query: 3   LNANMLQAQRSRFNSKTFSLTISKHNIPVLPRNRSLSFSTSWCPVHFRSISHSNLKFGSS 62
           L  N++Q  R   +   F  +IS  N                     +SIS    +F   
Sbjct: 8   LGKNLMQIHRLHRSQLDFPTSISSRN---------------------QSISGLFHRFPPQ 46

Query: 63  RNFVTNSVSENISGPFDQDPDRNYV------------TESNQVLNQE-FSLVNILKQSNS 109
            N V+   S     P+  D  R  +                 +++Q+  + V ILKQSNS
Sbjct: 47  INGVSVRCSNTFHSPYPLDVYRTVLLNLCGWIVILLAVRQRLIIDQKKTTFVEILKQSNS 106

Query: 110 FLPHVVLGSTMLALVFPPSFTWFTA------------------SEKDFIEAFKRPAAIFA 151
            LPHVVL ST++AL+FPPSF WFT+                  SEKDF+EAFK+PAAIFA
Sbjct: 107 LLPHVVLASTLVALIFPPSFAWFTSRYYAPALGFLMFAVGVNSSEKDFLEAFKQPAAIFA 166

Query: 152 GYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPL 211
           GYVGQF VKP+LGY+FGTI+V++FGLPT IGAGIMLVSCVSGAQLS+YATFLTDP LAPL
Sbjct: 167 GYVGQFFVKPLLGYLFGTIAVTLFGLPTAIGAGIMLVSCVSGAQLSSYATFLTDPSLAPL 226

Query: 212 SIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRI 271
           S+VMTSLSTATAV VTP LSLLLIGKRLPVDVKGM+SSI QIVV PIAAGLLLNRFFPRI
Sbjct: 227 SVVMTSLSTATAVVVTPFLSLLLIGKRLPVDVKGMISSITQIVVAPIAAGLLLNRFFPRI 286

Query: 272 CNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGL 331
           C AIRPFLPPLSVLVTACCVGAPLAINI +V+SPFGL+ILLLI+ FHLSAF+AGY +TGL
Sbjct: 287 CEAIRPFLPPLSVLVTACCVGAPLAININAVISPFGLSILLLIVAFHLSAFIAGYSLTGL 346

Query: 332 AFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVM 391
           AF  + DVK LQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTV+MSLMGF LVM
Sbjct: 347 AFHGSPDVKGLQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVMMSLMGFSLVM 406

Query: 392 LWAKKSE 398
           +W+K+ E
Sbjct: 407 IWSKRKE 413

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074737|ref|XP_002304447.1| bile acid:Na+ symporter family protein [Populus trichocarpa] gi|222841879|gb|EEE79426.1| bile acid:Na+ symporter family protein [Populus trichocarpa]

 Score =  498 bits (1282), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 254/316 (80%), Positives = 276/316 (87%), Gaps = 18/316 (5%)

Query: 99  SLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFT------------------ASEKDFI 140
           S+V++L+QSNS LPH+VL ST+LALV PPSFTWFT                  +SEKDF+
Sbjct: 1   SIVDMLEQSNSLLPHIVLASTLLALVHPPSFTWFTTRYYAPALGFLMFAVGVNSSEKDFL 60

Query: 141 EAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYA 200
           EAF RPAAI AGYVGQFVVKP LGY+FG ISVSVFGLPTPIGAGIMLVSCVSGAQLSNYA
Sbjct: 61  EAFNRPAAILAGYVGQFVVKPSLGYLFGIISVSVFGLPTPIGAGIMLVSCVSGAQLSNYA 120

Query: 201 TFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAA 260
           TFLTDPP+APLSIVMTS+STATAVFVTPLLSLLLIGKRLPVDVKGMVSSI+QIVV PIAA
Sbjct: 121 TFLTDPPMAPLSIVMTSMSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSIMQIVVAPIAA 180

Query: 261 GLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLS 320
           GLLLNR FP+I   IRPFLPPLSVLVTACCVGAPLAIN++SVMSPFG+TI+ LII FHLS
Sbjct: 181 GLLLNRLFPQISGVIRPFLPPLSVLVTACCVGAPLAINVDSVMSPFGVTIVSLIIAFHLS 240

Query: 321 AFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTV 380
           AFV GY  TG  F +A D+KALQRTLSYETGMQSSLLALALANRFF+DPLV+VPPAISTV
Sbjct: 241 AFVVGYYFTGFVFHKASDLKALQRTLSYETGMQSSLLALALANRFFKDPLVAVPPAISTV 300

Query: 381 IMSLMGFFLVMLWAKK 396
           IMSLMGF LVM+WAKK
Sbjct: 301 IMSLMGFSLVMIWAKK 316

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359497736|ref|XP_002274965.2| PREDICTED: uncharacterized sodium-dependent transporter yocS-like, partial [Vitis vinifera]

 Score =  480 bits (1236), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 247/348 (70%), Positives = 285/348 (81%), Gaps = 19/348 (5%)

Query: 50  RSISHSNLKFGSSRNFVTNSVSENISGPFDQDPDRNYVTESNQVLNQE-FSLVNILKQSN 108
           R+  + +L   S+R  +T  VS+ +S   + D D +Y  E +Q+  Q+  S+ +ILK +N
Sbjct: 9   RTDLNLSLTVASTRFSLTRCVSKKLSESLEPDQDPSYEPEPSQMRGQKKASITDILKGAN 68

Query: 109 SFLPHVVLGSTMLALVFPPSFTWFT------------------ASEKDFIEAFKRPAAIF 150
             LPHVVL ST++AL++PPSFTWFT                  +SEKDF+EAF RP AIF
Sbjct: 69  GILPHVVLASTLVALIYPPSFTWFTTRYYAPALGFLMFAVGVNSSEKDFLEAFNRPMAIF 128

Query: 151 AGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAP 210
           AGYVGQFVVKP+LGY+FGTI+V++FGLPT IGAGIML SCVSGAQLSNYATFLTDPP+AP
Sbjct: 129 AGYVGQFVVKPLLGYLFGTIAVTIFGLPTAIGAGIMLTSCVSGAQLSNYATFLTDPPMAP 188

Query: 211 LSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPR 270
           LSIVMTSLSTATAVFVTP+LSLLLIGKRLPVDVKGMVSSI QIVV PIAAGLLLNRF PR
Sbjct: 189 LSIVMTSLSTATAVFVTPILSLLLIGKRLPVDVKGMVSSISQIVVAPIAAGLLLNRFLPR 248

Query: 271 ICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTG 330
           ICNAIRPFLPPLSVLVTACCVG+PLAIN+ESV+SPFG+T+ +LII FH +AFVAGY ++G
Sbjct: 249 ICNAIRPFLPPLSVLVTACCVGSPLAINVESVLSPFGVTVSMLIIAFHFTAFVAGYGLSG 308

Query: 331 LAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAIS 378
           L F EA DVKALQRTLS+ETGMQSSLLALALANRFFQD LV VPPAIS
Sbjct: 309 LVFHEAPDVKALQRTLSFETGMQSSLLALALANRFFQDSLVGVPPAIS 356

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147773542|emb|CAN76453.1| hypothetical protein VITISV_011475 [Vitis vinifera]

 Score =  479 bits (1234), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 246/325 (75%), Positives = 277/325 (85%), Gaps = 23/325 (7%)

Query: 95  NQEFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFT------------------ASE 136
            ++ S+ +ILK +N  LPHVVL ST++AL++PPSFTWFT                  +SE
Sbjct: 4   QKKASIXDILKGANGILPHVVLASTLVALIYPPSFTWFTTRYYAPALGFLMFAVGVNSSE 63

Query: 137 KDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQL 196
           KDF+EAF RP AIFAGYVGQFVVKP+LGY+FGTI+V++FGLPT IGAGIML SCVSGAQL
Sbjct: 64  KDFLEAFNRPMAIFAGYVGQFVVKPLLGYLFGTIAVTIFGLPTAIGAGIMLTSCVSGAQL 123

Query: 197 SNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVV 256
           SNYATFLTDPP+APLSIVMTSLSTATAVFVTP+LSLLLIGKRLPVDVKGMVSSILQIVV 
Sbjct: 124 SNYATFLTDPPMAPLSIVMTSLSTATAVFVTPILSLLLIGKRLPVDVKGMVSSILQIVVA 183

Query: 257 PIAAGLLLNRFF-PRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLII 315
           PIAAGLLLNR+F PRICNAIRPFLPPLSVLVTACCVG+PLAIN+ESV+SPFG+T+ +LII
Sbjct: 184 PIAAGLLLNRWFLPRICNAIRPFLPPLSVLVTACCVGSPLAINVESVLSPFGVTVSMLII 243

Query: 316 TFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPP 375
            FH +AFVAGY ++GL F EA DVKA+QRTLS+ETGMQSSLLALALANRFFQD LV VPP
Sbjct: 244 AFHFTAFVAGYGLSGLVFHEAPDVKAIQRTLSFETGMQSSLLALALANRFFQDSLVGVPP 303

Query: 376 AISTVIMSLMGFFLVM----LWAKK 396
           AIS VIMSLMGF LVM    +W  K
Sbjct: 304 AISVVIMSLMGFALVMVGSIIWPMK 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799724|ref|XP_002867746.1| bile acid:sodium symporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297313582|gb|EFH44005.1| bile acid:sodium symporter family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  471 bits (1213), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 243/355 (68%), Positives = 285/355 (80%), Gaps = 24/355 (6%)

Query: 62  SRNFVTNSVSENISGPFDQDPDRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLGSTML 121
           SRN      S++ S     DP+ N V    +V+++  S+V+ +K++NS LPHVVL ST+L
Sbjct: 55  SRNLWRRYASDHFS-EMGLDPEANSV----KVIDKA-SIVDTMKKANSILPHVVLASTIL 108

Query: 122 ALVFPPSFTWFTA------------------SEKDFIEAFKRPAAIFAGYVGQFVVKPIL 163
           AL++PPSFTWFT+                  +EKDF+EAFKRP AI  GYVGQ++VKPIL
Sbjct: 109 ALLYPPSFTWFTSRYFVPALGFLMFAVGINSNEKDFLEAFKRPKAILLGYVGQYLVKPIL 168

Query: 164 GYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATA 223
           G+IFG  +VSVF LPTPIGAGIMLVSCVSGAQLSNYATFLTDP LAPLSIVMTSLSTATA
Sbjct: 169 GFIFGLAAVSVFQLPTPIGAGIMLVSCVSGAQLSNYATFLTDPALAPLSIVMTSLSTATA 228

Query: 224 VFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLS 283
           V VTP+LSLLLIGK+LPVDVKGM+SSILQ+V+ PIAAGLLLN+ FP++ NAIRPFLP LS
Sbjct: 229 VLVTPMLSLLLIGKKLPVDVKGMISSILQVVIAPIAAGLLLNKLFPKVSNAIRPFLPILS 288

Query: 284 VLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQ 343
           VL TACCVGAPLA+NI SVMSPFG TILLL+  FHLSAF+AGY +TG  F  A D KA+Q
Sbjct: 289 VLDTACCVGAPLALNINSVMSPFGATILLLVTMFHLSAFLAGYFLTGSVFRNAPDAKAMQ 348

Query: 344 RTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE 398
           RTLSYETGMQSSLLALALA +FFQDPLV +PPA+STV+MSLMGF LVM+W+ + E
Sbjct: 349 RTLSYETGMQSSLLALALATKFFQDPLVGIPPAVSTVVMSLMGFTLVMIWSNEKE 403

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18416020|ref|NP_567671.1| putative sodium-bile acid cotransporter [Arabidopsis thaliana] gi|75161555|sp|Q8VYY4.1|BASS6_ARATH RecName: Full=Probable sodium/metabolite cotransporter BASS6, chloroplastic; AltName: Full=Bile acid transporter 4; AltName: Full=Bile acid-sodium symporter family protein 6; Flags: Precursor gi|17529350|gb|AAL38902.1| unknown protein [Arabidopsis thaliana] gi|21436155|gb|AAM51324.1| unknown protein [Arabidopsis thaliana] gi|21618116|gb|AAM67166.1| unknown [Arabidopsis thaliana] gi|332659265|gb|AEE84665.1| putative sodium-bile acid cotransporter [Arabidopsis thaliana]

 Score =  467 bits (1201), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 241/359 (67%), Positives = 284/359 (79%), Gaps = 24/359 (6%)

Query: 58  KFGSSRNFVTNSVSENISGPFDQDPDRNYVTESNQVLNQEFSLVNILKQSNSFLPHVVLG 117
           + G SRN      S+N S     DP      +  +V+ +  S+V+ +K++NS LPHVVL 
Sbjct: 54  QVGGSRNLWRRYASDNFSE-MGLDPG----ADPFKVIEKP-SIVDRMKKANSILPHVVLA 107

Query: 118 STMLALVFPPSFTWFTA------------------SEKDFIEAFKRPAAIFAGYVGQFVV 159
           ST+LAL++PPSFTWFT+                  +EKDF+EAFKRP AI  GYVGQ++V
Sbjct: 108 STILALIYPPSFTWFTSRYFVPALGFLMFAVGINSNEKDFLEAFKRPKAILLGYVGQYLV 167

Query: 160 KPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLS 219
           KP+LG+IFG  +VS+F LPTPIGAGIMLVSCVSGAQLSNYATFLTDP LAPLSIVMTSLS
Sbjct: 168 KPVLGFIFGLAAVSLFQLPTPIGAGIMLVSCVSGAQLSNYATFLTDPALAPLSIVMTSLS 227

Query: 220 TATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFL 279
           TATAV VTP+LSLLLIGK+LPVDVKGM+SSILQ+V+ PIAAGLLLN+ FP++ NAIRPFL
Sbjct: 228 TATAVLVTPMLSLLLIGKKLPVDVKGMISSILQVVIAPIAAGLLLNKLFPKVSNAIRPFL 287

Query: 280 PPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDV 339
           P LSVL TACCVGAPLA+NI SVMSPFG TILLL+  FHLSAF+AGY +TG  F  A D 
Sbjct: 288 PILSVLDTACCVGAPLALNINSVMSPFGATILLLVTMFHLSAFLAGYFLTGSVFRNAPDA 347

Query: 340 KALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE 398
           KA+QRTLSYETGMQSSLLALALA +FFQDPLV +PPAISTV+MSLMGF LV++W+K+  
Sbjct: 348 KAMQRTLSYETGMQSSLLALALATKFFQDPLVGIPPAISTVVMSLMGFTLVLIWSKEKS 406

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|2827561|emb|CAA16569.1| predicted protein [Arabidopsis thaliana] gi|3292809|emb|CAA19799.1| putative protein [Arabidopsis thaliana] gi|7269131|emb|CAB79239.1| predicted protein [Arabidopsis thaliana]

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 242/366 (66%), Positives = 280/366 (76%), Gaps = 27/366 (7%)

Query: 60  GSSRNFVTNSVSENISG-PFDQDPDRNYVTESNQVLNQEF--------SLVNILKQSNSF 110
           G SRN      S+N S    D   D   V      L            S+V+ +K++NS 
Sbjct: 92  GGSRNLWRRYASDNFSEMGLDPGADPFKVCAMGSFLFHSMLCWVIEKPSIVDRMKKANSI 151

Query: 111 LPHVVLGSTMLALVFPPSFTWFTA------------------SEKDFIEAFKRPAAIFAG 152
           LPHVVL ST+LAL++PPSFTWFT+                  +EKDF+EAFKRP AI  G
Sbjct: 152 LPHVVLASTILALIYPPSFTWFTSRFFPLEQGFLMFAVGINSNEKDFLEAFKRPKAILLG 211

Query: 153 YVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLS 212
           YVGQ++VKP+LG+IFG  +VS+F LPTPIGAGIMLVSCVSGAQLSNYATFLTDP LAPLS
Sbjct: 212 YVGQYLVKPVLGFIFGLAAVSLFQLPTPIGAGIMLVSCVSGAQLSNYATFLTDPALAPLS 271

Query: 213 IVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRIC 272
           IVMTSLSTATAV VTP+LSLLLIGK+LPVDVKGM+SSILQ+V+ PIAAGLLLN+ FP++ 
Sbjct: 272 IVMTSLSTATAVLVTPMLSLLLIGKKLPVDVKGMISSILQVVIAPIAAGLLLNKLFPKVS 331

Query: 273 NAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLA 332
           NAIRPFLP LSVL TACCVGAPLA+NI SVMSPFG TILLL+  FHLSAF+AGY +TG  
Sbjct: 332 NAIRPFLPILSVLDTACCVGAPLALNINSVMSPFGATILLLVTMFHLSAFLAGYFLTGSV 391

Query: 333 FAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVML 392
           F  A D KA+QRTLSYETGMQSSLLALALA +FFQDPLV +PPAISTV+MSLMGF LV++
Sbjct: 392 FRNAPDAKAMQRTLSYETGMQSSLLALALATKFFQDPLVGIPPAISTVVMSLMGFTLVLI 451

Query: 393 WAKKSE 398
           W+K+  
Sbjct: 452 WSKEKS 457

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809511|ref|XP_002872639.1| bile acid:sodium symporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297318476|gb|EFH48898.1| bile acid:sodium symporter family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  455 bits (1170), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 244/416 (58%), Positives = 303/416 (72%), Gaps = 43/416 (10%)

Query: 8   LQAQRSRFNSKTFSLTISKHN---IPVLPRNRSLSFSTSW-CPVHFRSISHSNLKFGSSR 63
           L++Q      + +S  +  HN   +   P N S SFS+   C V F              
Sbjct: 12  LKSQHRLLQPRNYSYPLVFHNTRRVATFPCN-SFSFSSQGSCSVDFP------------- 57

Query: 64  NFVTNSVSENISGPFDQDPDRNYVTES--NQVLNQEFS-LVNILKQSNSFLPHVVLGSTM 120
              +N +S+N    +   P R YV+ES  N++ +++ S ++  LKQ+NSF+PH +L ST+
Sbjct: 58  -IQSNLISQNGKSSY---PWRRYVSESDSNEMYHKKVSSIMETLKQANSFIPHAILLSTI 113

Query: 121 LALVFPPSFTWF------------------TASEKDFIEAFKRPAAIFAGYVGQFVVKPI 162
           LAL++PPSFTWF                   ++E+DF+EA KRP AIFAGY+GQ+++KP+
Sbjct: 114 LALLYPPSFTWFKPRYFVPGLGFMMFAVGINSNERDFLEALKRPDAIFAGYIGQYLIKPL 173

Query: 163 LGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTAT 222
           LGYIFG I+VS+F LPT IGAGIMLVSCVSGAQLSNY TFLTDP LAPLSIVMTS+STAT
Sbjct: 174 LGYIFGVIAVSLFNLPTSIGAGIMLVSCVSGAQLSNYTTFLTDPSLAPLSIVMTSVSTAT 233

Query: 223 AVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPL 282
           AV VTP+LSLLLIGK+LPVDV GM+SSILQ+VV PIAAGLLLNR FPR+ NAI+PFLP L
Sbjct: 234 AVLVTPMLSLLLIGKKLPVDVIGMISSILQVVVTPIAAGLLLNRLFPRLSNAIKPFLPAL 293

Query: 283 SVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKAL 342
           +V+   CC+GAPLA+NI+S++SPFG TIL ++ITFHL AFVAGY  TG  F++  DVKAL
Sbjct: 294 TVIDMGCCIGAPLALNIDSILSPFGATILFIVITFHLLAFVAGYFFTGFFFSKVPDVKAL 353

Query: 343 QRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE 398
           QRT+SYETGMQSSLLALALA +FFQDPLV VPPAISTV+MSLMG  LV +W  + E
Sbjct: 354 QRTISYETGMQSSLLALALATKFFQDPLVGVPPAISTVVMSLMGVSLVTIWKNRKE 409

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	398
TAIR|locus:2132664	409	AT4G22840 "AT4G22840" [Arabido	0.912	0.887	0.605	6.5e-106
TAIR|locus:2118021	407	BAT5 "AT4G12030" [Arabidopsis	0.954	0.933	0.550	6.9e-102
TAIR|locus:2094483	431	AT3G25410 "AT3G25410" [Arabido	0.698	0.645	0.384	1.6e-51
TAIR|locus:2039533	409	BASS2 "AT2G26900" [Arabidopsis	0.628	0.611	0.363	3.2e-43
TAIR|locus:2202935	401	AT1G78560 "AT1G78560" [Arabido	0.640	0.635	0.332	1.9e-39
TIGR_CMR|BA_3574	322	BA_3574 "bile acid transporter	0.698	0.863	0.321	6e-32
UNIPROTKB|Q8E8Y1	308	SO_4519 "Sodium-dependent tran	0.731	0.944	0.301	2.4e-28
TIGR_CMR|SO_4519	308	SO_4519 "sodium-dependent tran	0.731	0.944	0.301	2.4e-28
RGD|1563513	473	Slc10a3 "solute carrier family	0.645	0.543	0.294	3.8e-10
MGI|MGI:95048	473	Slc10a3 "solute carrier family	0.575	0.484	0.288	4.9e-10

TAIR|locus:2132664 AT4G22840 "AT4G22840" [Arabidopsis thaliana (taxid:3702)]

 Score = 1048 (374.0 bits), Expect = 6.5e-106, P = 6.5e-106
 Identities = 230/380 (60%), Positives = 273/380 (71%)

Query:    29 IPVLPRNRSLSFSTSWCPVHFRSISHSNLKFGSSRNFVTNSVSENISGP-FDQDPDRNYV 87
             I V P N   + S S  P+    IS    + G SRN      S+N S    D   D   V
Sbjct:    30 IQVFPPNIFSNTSLS-SPLRIDPIS----QVGGSRNLWRRYASDNFSEMGLDPGADPFKV 84

Query:    88 TESNQVLNQEFSLVNILKQ---SNSFLPHVVLGST--MLALVFPPS--FTWFT----ASE 136
              E   ++++     +IL     +++ L  +   S     +  F P+  F  F     ++E
Sbjct:    85 IEKPSIVDRMKKANSILPHVVLASTILALIYPPSFTWFTSRYFVPALGFLMFAVGINSNE 144

Query:   137 KDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQL 196
             KDF+EAFKRP AI  GYVGQ++VKP+LG+IFG  +VS+F LPTPIGAGIMLVSCVSGAQL
Sbjct:   145 KDFLEAFKRPKAILLGYVGQYLVKPVLGFIFGLAAVSLFQLPTPIGAGIMLVSCVSGAQL 204

Query:   197 SNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVV 256
             SNYATFLTDP LAPLSIVMTSLSTATAV VTP+LSLLLIGK+LPVDVKGM+SSILQ+V+ 
Sbjct:   205 SNYATFLTDPALAPLSIVMTSLSTATAVLVTPMLSLLLIGKKLPVDVKGMISSILQVVIA 264

Query:   257 PIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGXXXXXXXXX 316
             PIAAGLLLN+ FP++ NAIRPFLP LSVL TACCVGAPLA+NI SVMSPFG         
Sbjct:   265 PIAAGLLLNKLFPKVSNAIRPFLPILSVLDTACCVGAPLALNINSVMSPFGATILLLVTM 324

Query:   317 FHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPA 376
             FHLSAF+AGY +TG  F  A D KA+QRTLSYETGMQSSLLALALA +FFQDPLV +PPA
Sbjct:   325 FHLSAFLAGYFLTGSVFRNAPDAKAMQRTLSYETGMQSSLLALALATKFFQDPLVGIPPA 384

Query:   377 ISTVIMSLMGFFLVMLWAKK 396
             ISTV+MSLMGF LV++W+K+
Sbjct:   385 ISTVVMSLMGFTLVLIWSKE 404

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=IEA;ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2118021 BAT5 "AT4G12030" [Arabidopsis thaliana (taxid:3702)]

 Score = 1010 (360.6 bits), Expect = 6.9e-102, P = 6.9e-102
 Identities = 224/407 (55%), Positives = 279/407 (68%)

Query:     8 LQAQRSRFNSKTFSLTISKHN---IPVLPRNRSLSFST-SWCPVHF--RS--ISHSNLKF 59
             L++Q      + +S  ++ H+   +   PRN   SFS+   C V F  RS  IS ++   
Sbjct:    12 LKSQHRLLQPRNYSYALAFHSTRRVANFPRN---SFSSLGSCSVDFPLRSNPISQNSKSI 68

Query:    60 GSSRNFVTNSVSENISGPFDQDPDRNYVTESNQVLNQEFSLV--NILKQSNSFLPHVVLG 117
                R +V+ S S  +            V+   + L Q +S +   IL  +   L +    
Sbjct:    69 HPWRRYVSESDSNELY--------HKKVSSIMETLKQAYSFIPHGILLSTILALVYPPSF 120

Query:   118 STMLALVFPPS--FTWFT----ASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTIS 171
             +      F P   F  F     ++E+DF+EA KRP AIFAGY+GQ+++KP+LGYIFG I+
Sbjct:   121 TWFKPRYFVPGLGFMMFAVGINSNERDFLEALKRPDAIFAGYIGQYLIKPLLGYIFGVIA 180

Query:   172 VSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLS 231
             VS+F LPT IGAGIMLVSCVSGAQLSNY TFLTDP LA LSIVMTS+STATAV VTP+LS
Sbjct:   181 VSLFNLPTSIGAGIMLVSCVSGAQLSNYTTFLTDPSLAALSIVMTSISTATAVLVTPMLS 240

Query:   232 LLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCV 291
             LLLIGK+LPVDV GM+SSILQ+V+ PIAAGLLLNR FPR+ NAI+PFLP L+V+  +CC+
Sbjct:   241 LLLIGKKLPVDVFGMISSILQVVITPIAAGLLLNRLFPRLSNAIKPFLPALTVIDMSCCI 300

Query:   292 GAPLAINIESVMSPFGXXXXXXXXXFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETG 351
             GAPLA+NI+S++SPFG         FHL AFVAGY  TG  F++A DVKALQRT+SYETG
Sbjct:   301 GAPLALNIDSILSPFGATILFLVITFHLLAFVAGYFFTGFFFSKAPDVKALQRTISYETG 360

Query:   352 MQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE 398
             MQSSLLALALA +FFQDPLV VPPAISTV+MSLMG  LV +W  + E
Sbjct:   361 MQSSLLALALATKFFQDPLVGVPPAISTVVMSLMGVSLVTIWKNRKE 407

GO:0005215 "transporter activity" evidence=ISS;IMP

GO:0006814 "sodium ion transport" evidence=IEA;ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0009536 "plastid" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP;IDA

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA;IMP

TAIR|locus:2094483 AT3G25410 "AT3G25410" [Arabidopsis thaliana (taxid:3702)]

 Score = 486 (176.1 bits), Expect = 1.6e-51, Sum P(2) = 1.6e-51
 Identities = 117/304 (38%), Positives = 172/304 (56%)

Query:   108 NSFLPHVVLGSTMLALVFPPSFTWFTA------------------SEKDFIEAFKRPAAI 149
             ++ LP VV  + + AL +PPSFTW +                   S  DF  AFKRP  +
Sbjct:   112 SALLPFVVALTAVAALSYPPSFTWVSKDLYAPALGGIMLSIGIQLSVDDFALAFKRPVPL 171

Query:   150 FAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLA 209
               G+V Q+V+KP+LG +      + FG+P    AG +L  CV+GAQLS+YA+ L+   +A
Sbjct:   172 SVGFVAQYVLKPLLGVLVA----NAFGMPRTFYAGFILTCCVAGAQLSSYASSLSKADVA 227

Query:   210 PLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFP 269
              +SI++TS +T  +V  TPLLS LLIG  +PVD   M  SILQ+V+VPI  GL+LN +  
Sbjct:   228 -MSILLTSSTTIASVIFTPLLSGLLIGSVVPVDAVAMSKSILQVVLVPITLGLVLNTYAK 286

Query:   270 RICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGXXXXXXXXXFHLSAFVAGYVVT 329
              +   ++P +P ++++ T+ C+G+PL+IN   ++S  G         FH  AF  GY  +
Sbjct:   287 PVVTLLQPVMPFVAMVCTSLCIGSPLSINRSQILSAEGLGLIVPIVTFHAVAFALGYWFS 346

Query:   330 GLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFL 389
              +      +   + RT+S  TGMQSS LA  LA++F      +VP A S V+M++MG  L
Sbjct:   347 KIPGLRQEE--EVSRTISLCTGMQSSTLAGLLASQFLGSSQ-AVPAACSVVVMAIMGLCL 403

Query:   390 VMLW 393
                W
Sbjct:   404 ASFW 407

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=IEA;ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR|locus:2039533 BASS2 "AT2G26900" [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 3.2e-43, Sum P(2) = 3.2e-43
 Identities = 95/261 (36%), Positives = 150/261 (57%)

Query:   133 TASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVS 192
             T + +DF    + P  +  G++ Q+++KPILG++   I++++  L  P+  G++LVSC  
Sbjct:   145 TLTFEDFRRCLRNPWTVGVGFLAQYMIKPILGFL---IAMTL-KLSAPLATGLILVSCCP 200

Query:   193 GAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQ 252
             G Q SN AT+++   +A LS++MT+ ST  A+ +TPLL+ LL G+ +PVD  G+  S  Q
Sbjct:   201 GGQASNVATYISKGNVA-LSVLMTTCSTIGAIIMTPLLTKLLAGQLVPVDAAGLALSTFQ 259

Query:   253 IVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGXXXXX 312
             +V+VP   G+L N FFP+  + I    P + V++T     +P+   +  V+   G     
Sbjct:   260 VVLVPTIIGVLANEFFPKFTSKIITVTPLIGVILTTLLCASPIG-QVADVLKTQGAQLIL 318

Query:   313 XXXXFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVS 372
                  H +AF  GY ++  +F E+       RT+S E GMQSS L   LA + F +PLV+
Sbjct:   319 PVALLHAAAFAIGYWISKFSFGES-----TSRTISIECGMQSSALGFLLAQKHFTNPLVA 373

Query:   373 VPPAISTVIMSLMGFFLVMLW 393
             VP A+S V M+L G  L + W
Sbjct:   374 VPSAVSVVCMALGGSGLAVFW 394

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006849 "plasma membrane pyruvate transport" evidence=IDA

GO:0050833 "pyruvate transmembrane transporter activity" evidence=IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0019761 "glucosinolate biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TAIR|locus:2202935 AT1G78560 "AT1G78560" [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 1.9e-39, Sum P(2) = 1.9e-39
 Identities = 88/265 (33%), Positives = 147/265 (55%)

Query:   133 TASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVS 192
             T +  D   A   P  +FAG++ Q+ V P+  +    +S  +  LP    AG++LV C  
Sbjct:   141 TLTLDDLRGALSMPKELFAGFLLQYSVMPLSAFF---VS-KLLNLPPHYAAGLILVGCCP 196

Query:   193 GAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQ 252
             G   SN  T++    +A LS++MT+ ST +AV +TPLL+  L  + + VD  G++ S LQ
Sbjct:   197 GGTASNIVTYIARGNVA-LSVLMTAASTVSAVIMTPLLTAKLAKQYITVDALGLLMSTLQ 255

Query:   253 IVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGXXXXX 312
             +V++P+ AG  LN++F ++   + P +PP++V   A   G  +  N  +++   G     
Sbjct:   256 VVLLPVLAGAFLNQYFKKLVKFVSPVMPPIAVGTVAILCGYAIGQNASAILMS-GKQVVL 314

Query:   313 XXXXFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVS 372
                  H+S F+ GY+ + +      DV A  RT+S E GMQ+S+L + LA + F +PL +
Sbjct:   315 ASCLLHISGFLFGYLFSRIL---GIDV-ASSRTISIEVGMQNSVLGVVLATQHFGNPLTA 370

Query:   373 VPPAISTVIMSLMGFFLVMLWAKKS 397
             VP A+S+V  S++G  L  +W + +
Sbjct:   371 VPCAVSSVCHSILGSVLAGIWRRSA 395

GO:0005215 "transporter activity" evidence=ISS

GO:0006814 "sodium ion transport" evidence=IEA;ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0016020 "membrane" evidence=ISS

GO:0035725 "sodium ion transmembrane transport" evidence=IEA;ISS

GO:0009941 "chloroplast envelope" evidence=IDA

TIGR_CMR|BA_3574 BA_3574 "bile acid transporter family protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 94/292 (32%), Positives = 146/292 (50%)

Query:   110 FLPHVVLG--STMLALVFPPSFTW-FTASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYI 166
             F+P   LG  S +  L+    F    T    DF     +P  +  G   QF++ P++ Y+
Sbjct:    28 FIPAPFLGLNSYITILLGVVMFGMGLTLKAVDFKIIATKPLPVIIGVCAQFIIMPLVAYV 87

Query:   167 FGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFV 226
                    V  LP  + AG++L+  V G   SN   +L    LA LSI MTSLST  A   
Sbjct:    88 LAY----VMNLPAELAAGLVLLGSVPGGTASNVMVYLAKGNLA-LSIAMTSLSTLLAPIA 142

Query:   227 TPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLV 286
             TPL+ LLL G+ +PV+   M  SI+Q++++PI  GL++ +FFP+        +P +SVL 
Sbjct:   143 TPLILLLLAGQWMPVNPMSMFLSIVQVIIIPIILGLVVKKFFPKTVTKGMTVIPFISVLA 202

Query:   287 TACCVGAPLAINIESVMSPFGXXXXXXXXXFHLSAFVAGYVVTGLAFAEAHDVKALQRTL 346
                 V A ++ N+ S+ S  G          +   F+ GY+    AF    D +  +R +
Sbjct:   203 IIIIVSAVVSANVSSITSS-GLLILIAVMLHNAFGFLLGYIT---AFILKLD-EGTRRAI 257

Query:   347 SYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKSE 398
             S E GMQ+S L +ALA   F  P  ++P  ++ V  ++ G  L  +W+K ++
Sbjct:   258 SIEVGMQNSGLGVALATAHF-GPAAALPSVLAAVWHNIAGPILATIWSKNAK 308

GO:0006810 "transport" evidence=ISS

GO:0008508 "bile acid:sodium symporter activity" evidence=ISS

UNIPROTKB|Q8E8Y1 SO_4519 "Sodium-dependent transporter BASS family" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 93/308 (30%), Positives = 159/308 (51%)

Query:    94 LNQEFSLVNILKQSNSFL-P--HVVLGSTMLALVFPPSFTW-FTASEKDFIEAFKRPAAI 149
             +N+ F L  +L    ++L P   VV  ++++ L+     +   T   +DF  AFK+  A+
Sbjct:     4 VNRLFPLFALLGAVTAYLMPAWFVVFKNSIVPLLVVIMLSMGLTLDLQDFANAFKQKRAV 63

Query:   150 FAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLA 209
               G + QF + P+       IS+ + GL   +  G++LV  V+G   SN   +L    +A
Sbjct:    64 ITGLILQFTLMPLSAL---AISL-LLGLDRELTIGMVLVGSVAGGTASNVICYLAKGDVA 119

Query:   210 PLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFF- 268
              LSI MT+LST   V +TPL+  LLIG+ + + +  M+ S+++IV++P+  G++LN FF 
Sbjct:   120 -LSITMTALSTLAGVVLTPLIIQLLIGEMVAIPLMDMLLSLVKIVLIPVTVGVVLNHFFK 178

Query:   269 PRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGXXXXXXXXXFHLSAFVAGYVV 328
             P++   + P LP +S++     +   +A+N     +  G          +      GY+ 
Sbjct:   179 PQVAK-LSPALPLISIVAIVMAISIIVALNAGQ-FAQVGPVILLAVFLHNGLGLTLGYLC 236

Query:   329 TGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFF 388
               L    +H V    +T+S E G+Q+S LA AL  +FF  P+ ++P AI ++  +L G  
Sbjct:   237 CRL-LGFSHTVC---KTISIEVGLQNSGLATALCIKFFS-PISAIPSAIFSIWHNLSGAM 291

Query:   389 LVMLWAKK 396
             L   WA +
Sbjct:   292 LAGYWASR 299

GO:0006810 "transport" evidence=ISS

GO:0015370 "solute:sodium symporter activity" evidence=ISS

TIGR_CMR|SO_4519 SO_4519 "sodium-dependent transporter" [Shewanella oneidensis MR-1 (taxid:211586)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 93/308 (30%), Positives = 159/308 (51%)

Query:    94 LNQEFSLVNILKQSNSFL-P--HVVLGSTMLALVFPPSFTW-FTASEKDFIEAFKRPAAI 149
             +N+ F L  +L    ++L P   VV  ++++ L+     +   T   +DF  AFK+  A+
Sbjct:     4 VNRLFPLFALLGAVTAYLMPAWFVVFKNSIVPLLVVIMLSMGLTLDLQDFANAFKQKRAV 63

Query:   150 FAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLA 209
               G + QF + P+       IS+ + GL   +  G++LV  V+G   SN   +L    +A
Sbjct:    64 ITGLILQFTLMPLSAL---AISL-LLGLDRELTIGMVLVGSVAGGTASNVICYLAKGDVA 119

Query:   210 PLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFF- 268
              LSI MT+LST   V +TPL+  LLIG+ + + +  M+ S+++IV++P+  G++LN FF 
Sbjct:   120 -LSITMTALSTLAGVVLTPLIIQLLIGEMVAIPLMDMLLSLVKIVLIPVTVGVVLNHFFK 178

Query:   269 PRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGXXXXXXXXXFHLSAFVAGYVV 328
             P++   + P LP +S++     +   +A+N     +  G          +      GY+ 
Sbjct:   179 PQVAK-LSPALPLISIVAIVMAISIIVALNAGQ-FAQVGPVILLAVFLHNGLGLTLGYLC 236

Query:   329 TGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFF 388
               L    +H V    +T+S E G+Q+S LA AL  +FF  P+ ++P AI ++  +L G  
Sbjct:   237 CRL-LGFSHTVC---KTISIEVGLQNSGLATALCIKFFS-PISAIPSAIFSIWHNLSGAM 291

Query:   389 LVMLWAKK 396
             L   WA +
Sbjct:   292 LAGYWASR 299

GO:0006810 "transport" evidence=ISS

GO:0015370 "solute:sodium symporter activity" evidence=ISS

RGD|1563513 Slc10a3 "solute carrier family 10 (sodium/bile acid cotransporter family), member 3" [Rattus norvegicus (taxid:10116)]

 Score = 173 (66.0 bits), Expect = 3.8e-10, P = 3.8e-10
 Identities = 84/285 (29%), Positives = 129/285 (45%)

Query:   120 MLALVFPPSFTWFTASEKDFI-EAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLP 178
             +L L+F    ++    E + + E  + P  +  G +GQF+V P   Y F  +   VF LP
Sbjct:   192 LLPLIFVNKCSFGCKVELEVLKELLQSPQPMLLGLLGQFLVMPF--YAF--LMAKVFMLP 247

Query:   179 TPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLS-----LL 233
               +  G+ +++C S     +Y   L       L+I MT +ST  A    PL S     LL
Sbjct:   248 KALALGL-IITCSSPGGGGSYLFSLLLGGDVTLAISMTFISTVAATGFLPLSSAIYSYLL 306

Query:   234 LIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLS-VLVTACCVG 292
              I + L V +  ++ ++L  + +PIAAG+++    P+    +   + P S VL+     G
Sbjct:   307 SIHETLHVPISKILGTLL-FIAIPIAAGVVIKSKLPKFSELLLQVIKPFSFVLLLG---G 362

Query:   293 APLAINIESVMSPFGXXXXXXXXXFH--LSAFVAGYVVTGLAFAEAHDVKALQRTLSYET 350
               LA ++  V    G         F   L   + GY    LA      V A +RT+S E 
Sbjct:   363 LFLAYHM-GVFILVGVRLPIVLVGFTVPLVGLLVGY---SLAICLKLPV-AQRRTVSIEV 417

Query:   351 GMQSSLLALA---LANRFFQDPLVSVPPAISTVIMSLMGFFLVML 392
             G+Q+SLLALA   L+ R  Q    S  P I  V +S     LV++
Sbjct:   418 GVQNSLLALAMLQLSLRRLQADYASQAPFI--VALSGTSEMLVLV 460

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0032526 "response to retinoic acid" evidence=IEA;ISO

GO:0042221 "response to chemical stimulus" evidence=ISO

MGI|MGI:95048 Slc10a3 "solute carrier family 10 (sodium/bile acid cotransporter family), member 3" [Mus musculus (taxid:10090)]

 Score = 172 (65.6 bits), Expect = 4.9e-10, P = 4.9e-10
 Identities = 72/250 (28%), Positives = 115/250 (46%)

Query:   120 MLALVFPPSFTWFTASEKDFI-EAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLP 178
             +L L+F    ++    E + + E  + P  +  G +GQF+V P   Y F  +   VF LP
Sbjct:   192 LLPLIFVNKCSFGCKVELEVLKELLQSPQPMLLGLLGQFLVMPF--YAF--LMAKVFMLP 247

Query:   179 TPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLS-----LL 233
               +  G+ +++C S     +Y   L       L+I MT +ST  A    PL S     LL
Sbjct:   248 KALALGL-IITCSSPGGGGSYLFSLLLGGDVTLAISMTFISTVAATGFLPLSSAIYSYLL 306

Query:   234 LIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGA 293
              I + L V +  ++ ++L  + +PIAAG+++    P+    +   + P S ++     G 
Sbjct:   307 SIHETLHVPISKILGTLL-FIAIPIAAGVVIKSKLPKFSELLLQVIKPFSFILLLG--GL 363

Query:   294 PLAINIESVMSPFGXXXXXXXXXFH--LSAFVAGYVVTGLAFAEAHDVKALQRTLSYETG 351
              LA ++  V    G         F   L   + GY    LA      V A +RT+S E G
Sbjct:   364 FLAYHM-GVFILVGVRLPIVLVGFTVPLVGLLVGY---SLAICLKLPV-AQRRTVSIEVG 418

Query:   352 MQSSLLALAL 361
             +Q+SLLALA+
Sbjct:   419 VQNSLLALAM 428

GO:0006810 "transport" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA

GO:0008508 "bile acid:sodium symporter activity" evidence=IEA

GO:0015293 "symporter activity" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0032526 "response to retinoic acid" evidence=IDA

GO:0042221 "response to chemical stimulus" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q650U0	BASS5_ORYSJ	No assigned EC number	0.6534	0.8341	0.8279	yes	no
Q8VYY4	BASS6_ARATH	No assigned EC number	0.6713	0.8417	0.8190	yes	no
B8BDK4	BASS5_ORYSI	No assigned EC number	0.6534	0.8341	0.8279	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: gw1.III.321.1 bile acid-Na+ symporter family protein (317 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	398
COG0385	319	COG0385, COG0385, Predicted Na+-dependent transpor	5e-43
TIGR00841	286	TIGR00841, bass, bile acid transporter	6e-41
pfam01758	188	pfam01758, SBF, Sodium Bile acid symporter family	1e-34
pfam13593	313	pfam13593, DUF4137, SBF-like CPA transporter famil	0.004

>gnl|CDD|223462 COG0385, COG0385, Predicted Na+-dependent transporter [General function prediction only]

 Score =  152 bits (386), Expect = 5e-43
 Identities = 103/305 (33%), Positives = 153/305 (50%), Gaps = 28/305 (9%)

Query: 109 SFLPHVVLGSTMLALVFPPSFTWF-----------------TASEKDFIEAFKRPAAIFA 151
            FL  VVL +  +A +FP +F W                  T S +DF+   K P  +  
Sbjct: 14  IFLLWVVLLAA-IAPIFPETFGWLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLI 72

Query: 152 GYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPL 211
           G   QFV+ P+L  +       +F LP  +  G++L+ C  G   SN  T+L    +A L
Sbjct: 73  GLAAQFVLMPLLALLLA----KLFPLPPELAVGLLLLGCCPGGVASNAMTYLAKGNVA-L 127

Query: 212 SIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRI 271
           S+  TS+ST    F+TPLL  LL G  +PVDV GM  SIL  V++P   G LL    P+ 
Sbjct: 128 SVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLLRPLLPKW 187

Query: 272 CNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGL 331
              ++  LPP+SVL     V A  +  +E+ +   GL I + +I  +L   + GY    L
Sbjct: 188 VERLKKALPPVSVLSILLIVYAAFSAAVENGIW-SGLLIFVAVILHNLLGLLLGYFGARL 246

Query: 332 AFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVM 391
              +    KA + T++ E GMQ+  L  ALA  FF +PL+++P AI +V  ++ G  L  
Sbjct: 247 LGFD----KADEITIAIEGGMQNLGLGAALAAAFFGNPLMALPLAIFSVWQNMSGAVLAG 302

Query: 392 LWAKK 396
           L+A++
Sbjct: 303 LYARR 307

Length = 319

>gnl|CDD|188087 TIGR00841, bass, bile acid transporter

 Score =  145 bits (369), Expect = 6e-41
 Identities = 77/263 (29%), Positives = 129/263 (49%), Gaps = 15/263 (5%)

Query: 137 KDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQL 196
           +DF    ++P  +  G + Q+ + P+ G++       VF LP  +  G+++V C  G   
Sbjct: 28  EDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLA----KVFKLPPELAVGVLIVGCCPGGTA 83

Query: 197 SNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSI---LQI 253
           SN  T+L    +A LSI MT+ ST  A+ + PLL  +     +   +      I   L I
Sbjct: 84  SNVFTYLLKGDMA-LSISMTTCSTLLALGMMPLLLYIYAKMWVDGTLVVPYLGIGLSLVI 142

Query: 254 VVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLL 313
           V++P++ G+L+    P+I   I   +  +SV + +  +     IN+E+ ++  G  +LL+
Sbjct: 143 VLIPVSIGMLVKHKLPQIAKIIL-KVGLISVFLLSVIIAVVGGINVEN-LATIGPLLLLV 200

Query: 314 IITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSV 373
            I   L+ F+ GY++  LA        A  RT+S E GMQ+S L   +A   F  P V+V
Sbjct: 201 GILLPLAGFLLGYLLAKLAGLP----WARCRTISIEVGMQNSQLCSTIAQLSFS-PEVAV 255

Query: 374 PPAISTVIMSLMGFFLVMLWAKK 396
           P AI  +I +L      +L+   
Sbjct: 256 PSAIFPLIYALFQLAFALLFLII 278

The Bile Acid:Na+ Symporter (BASS) Family (TC 2.A.28) Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 286

>gnl|CDD|216683 pfam01758, SBF, Sodium Bile acid symporter family

 Score =  126 bits (318), Expect = 1e-34
 Identities = 62/179 (34%), Positives = 93/179 (51%), Gaps = 10/179 (5%)

Query: 133 TASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVS 192
               +DF E F+RP A+  G + Q+V+ P+L +I       +  LP  +  G++LV C  
Sbjct: 14  KVRYEDFKELFRRPKALLLGLLLQWVIMPLLMFILAWF---LLRLPPELAVGLILVGCAP 70

Query: 193 GAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVK----GMVS 248
           G  +SN  T+L    +  LS+VM +LST TA  VTPLLS LL G  L V        ++ 
Sbjct: 71  GGAMSNVWTYLAKGDVE-LSVVMVALSTLTAPLVTPLLSFLLSGLLLDVGTAVSPLSLIK 129

Query: 249 SILQIVVVPIAAGLLLNRFFPR--ICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSP 305
           S+L  V++P+ AG+L   F PR      I P LPP+S++     +    ++  E + S 
Sbjct: 130 SVLIYVIIPLIAGILTRYFLPREWFEQRILPVLPPISLIGLLLTIVVIFSLKGEVIASL 188

This family consists of Na+/bile acid co-transporters. These transmembrane proteins function in the liver in the uptake of bile acids from portal blood plasma a process mediated by the co-transport of Na+. Also in the family is ARC3 from S. cerevisiae, this is a putative transmembrane protein involved in resistance to arsenic compounds. Length = 188

>gnl|CDD|222249 pfam13593, DUF4137, SBF-like CPA transporter family (DUF4137)

 Score = 38.3 bits (90), Expect = 0.004
 Identities = 42/182 (23%), Positives = 73/182 (40%), Gaps = 37/182 (20%)

Query: 157 FVVKPILGYIFGTISVSVFG------------LPTPIGAGIMLVSCVSGAQLSNYATFLT 204
           FV+ P+LG     +  +               LPT + + + + S   G           
Sbjct: 71  FVLFPLLGLGLSPLLPAALPPELLLGFLFLAALPTTVSSSVAMTSQAGG----------- 119

Query: 205 DPPLAPLSIVMTSLSTATAVFVTPLL-SLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLL 263
           +   A   +   S+S    VF+TPLL  LLL G    VD+  ++  +L  +++P   G L
Sbjct: 120 NVAAA---VCSASISNLLGVFLTPLLVGLLLGGGGGGVDLGAVLKKLLLQLLLPFVLGQL 176

Query: 264 LNRFFPRICNAIRPFLPPLS----VLV--TACCV----GAPLAINIESVMSPFGLTILLL 313
           L   FP+     +  L  +     +L+  TA       G   +++   ++  F L +LLL
Sbjct: 177 LRPLFPKWVARHKKLLKKVDRSSILLIVYTAFSTAFVEGIWHSVSHSILLVIFALGLLLL 236

Query: 314 II 315
            +
Sbjct: 237 FV 238

These family members are membrane transporter proteins of the CPA and AT superfamily. Length = 313

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	398
COG0385	319	Predicted Na+-dependent transporter [General funct	100.0
TIGR00832	328	acr3 arsenical-resistance protein. The first prote	100.0
TIGR00841	286	bass bile acid transporter. Functionally character	100.0
PF13593	313	DUF4137: SBF-like CPA transporter family (DUF4137)	100.0
COG0798	342	ACR3 Arsenite efflux pump ACR3 and related permeas	100.0
PF01758	187	SBF: Sodium Bile acid symporter family; InterPro:	99.97
KOG2718	371	consensus Na+-bile acid cotransporter [Inorganic i	99.95
KOG4821	287	consensus Predicted Na+-dependent cotransporter [G	98.87
KOG2718	371	consensus Na+-bile acid cotransporter [Inorganic i	98.43
TIGR00946	321	2a69 he Auxin Efflux Carrier (AEC) Family.	98.29
PRK09903	314	putative transporter YfdV; Provisional	97.98
PRK12460	312	2-keto-3-deoxygluconate permease; Provisional	97.8
PF03812	314	KdgT: 2-keto-3-deoxygluconate permease; InterPro:	97.71
COG0679	311	Predicted permeases [General function prediction o	97.71
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	97.62
PF05145	318	AmoA: Putative ammonia monooxygenase; InterPro: IP	97.29
TIGR00793	314	kdgT 2-keto-3-deoxygluconate transporter. This fam	97.04
COG3180	352	AbrB Putative ammonia monooxygenase [General funct	96.87
PRK05274	326	2-keto-3-deoxygluconate permease; Provisional	96.3
TIGR00946	321	2a69 he Auxin Efflux Carrier (AEC) Family.	95.28
PF04172	215	LrgB: LrgB-like family ; InterPro: IPR007300 The t	95.03
PF03977	360	OAD_beta: Na+-transporting oxaloacetate decarboxyl	94.95
TIGR03136	399	malonate_biotin Na+-transporting malonate decarbox	94.2
TIGR00659	226	conserved hypothetical protein TIGR00659. Members	94.05
PRK04288	232	antiholin-like protein LrgB; Provisional	93.94
PRK10711	231	hypothetical protein; Provisional	93.91
PRK09903	314	putative transporter YfdV; Provisional	93.71
PF03547	385	Mem_trans: Membrane transport protein; InterPro: I	93.56
COG0679	311	Predicted permeases [General function prediction o	93.44
TIGR03082	156	Gneg_AbrB_dup membrane protein AbrB duplication. T	93.37
PF03601	305	Cons_hypoth698: Conserved hypothetical protein 698	92.21
TIGR01109	354	Na_pump_decarbB sodium ion-translocating decarboxy	89.27
COG1346	230	LrgB Putative effector of murein hydrolase [Cell e	89.19
PRK15475	433	oxaloacetate decarboxylase subunit beta; Provision	88.47
PF05145	318	AmoA: Putative ammonia monooxygenase; InterPro: IP	88.47
PRK15477	433	oxaloacetate decarboxylase subunit beta; Provision	88.45
PRK15476	433	oxaloacetate decarboxylase subunit beta; Provision	88.43
PF06826	169	Asp-Al_Ex: Predicted Permease Membrane Region; Int	85.15
COG2855	334	Predicted membrane protein [Function unknown]	83.97
PRK05326	562	potassium/proton antiporter; Reviewed	82.44
PRK04972	558	putative transporter; Provisional	81.91

>COG0385 Predicted Na+-dependent transporter [General function prediction only]

Probab=100.00  E-value=2.3e-52  Score=407.65  Aligned_cols=287  Identities=34%  Similarity=0.558  Sum_probs=266.9

Q ss_pred             HHHH-HHHHhHHHHHHHHHHHHHhhcCCCCccc-----------------ccCHHHHHHHHhchhHHHHHHHHHHhHHHH
Q 015905          101 VNIL-KQSNSFLPHVVLGSTMLALVFPPSFTWF-----------------TASEKDFIEAFKRPAAIFAGYVGQFVVKPI  162 (398)
Q Consensus       101 ~~~l-~~~~~~l~~~il~~~~lg~~~P~~~~~l-----------------~l~~~dl~~~l~~P~~l~~gl~~qfvimPl  162 (398)
                      .+.+ ....+.+++|+++.+.++...|+.+.|+                 +++.+|+++.+||||.+++++++||++||+
T Consensus         4 ~~~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPl   83 (319)
T COG0385           4 LRFLSRDPFKIFLLWVVLLAAIAPIFPETFGWLGSAIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPL   83 (319)
T ss_pred             HHHHhHhHHHHHHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence            3444 2334558999999999999999999886                 399999999999999999999999999999


Q ss_pred             HHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCCccccC
Q 015905          163 LGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVD  242 (398)
Q Consensus       163 la~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~aaLsl~mt~istlla~~~~Plll~ll~g~~v~vd  242 (398)
                      ++|+++    ..+++||+++.|+++++|||||+.||+||+++|||+ ++|+++|.+||+++++++|+++.++.|+.+++|
T Consensus        84 la~~~~----~~~~l~~~l~~Gl~ll~~~Pggv~S~~~t~lAkGnV-alsV~~tsvStll~~f~tPllv~l~~~~~v~~~  158 (319)
T COG0385          84 LALLLA----KLFPLPPELAVGLLLLGCCPGGVASNAMTYLAKGNV-ALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVD  158 (319)
T ss_pred             HHHHHH----HHcCCCHHHHHhHHheeeCCCchhHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc
Confidence            999999    578899999999999999999999999999999999 899999999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCcCChhHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHH
Q 015905          243 VKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAF  322 (398)
Q Consensus       243 ~~~i~~~Ll~~VllPl~lG~llr~~~p~~a~~l~~~l~~~s~l~llliv~~~~~~n~~~i~~~~~~~i~la~~ll~l~gf  322 (398)
                      .+++++++++++++|+++|+++|++.|++.++.++.+++++..+++++++..++.+.+.+.+. +..+.+++++++.++|
T Consensus       159 ~~~m~~~i~~~vllP~~LG~~~r~~~~~~~~~~~~~l~~vs~~~illIv~~~~s~~~~~~~~~-~~~v~~~v~~~n~lg~  237 (319)
T COG0385         159 VGGMFLSILLQVLLPFVLGQLLRPLLPKWVERLKKALPPVSVLSILLIVYAAFSAAVENGIWS-GLLIFVAVILHNLLGL  237 (319)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHHHHHhhhHH-HHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999888877764 4567788999999999


Q ss_pred             HHHHHHHHHhhcCCccccchhhheeeecccccHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 015905          323 VAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKS  397 (398)
Q Consensus       323 ~lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~~Lal~LA~~~F~~p~valp~~iy~v~q~i~g~~la~~~~~~~  397 (398)
                      ..||+.+| +++.++   +|++|+++|+||||.++|+++|..||++|.+++|.++|++||++.+++++.+|+||.
T Consensus       238 ~~gy~~ar-~~g~~~---a~~iti~ie~g~qn~~lg~alA~~f~~~~~~alP~aif~~~q~~~~a~la~~~~~~~  308 (319)
T COG0385         238 LLGYFGAR-LLGFDK---ADEITIAIEGGMQNLGLGAALAAAFFGNPLMALPLAIFSVWQNMSGAVLAGLYARRI  308 (319)
T ss_pred             HHHHHHHH-HhCCCh---hheeeEEEeeccccHHHHHHHHHhcCCCchhHhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            99999998 578886   899999999999999999999999776699999999999999999999999999974

>TIGR00832 acr3 arsenical-resistance protein

Probab=100.00  E-value=5.2e-43  Score=348.30  Aligned_cols=241  Identities=15%  Similarity=0.223  Sum_probs=212.7

Q ss_pred             ccCHHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcCCCchhhH
Q 015905          133 TASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLS  212 (398)
Q Consensus       133 ~l~~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~aaLs  212 (398)
                      ++++||+++.+||||.+..+++.||+++|+++|++++   .+++++|++++|+++++|||||++||+||+++|||+ ++|
T Consensus        59 ~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~---l~~~~~p~l~~GliLv~~~Pgg~~S~v~T~lAkGnv-als  134 (328)
T TIGR00832        59 KVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAW---LFLRDLFEYIAGLILLGLARCIAMVFVWNQLAKGDP-EYT  134 (328)
T ss_pred             cCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHH---HHcCCCHHHHHHHHHHHhcchHHHHHHHHHHcCCCH-HHH
Confidence            4899999999999999999999999999999999995   346999999999999999999999999999999999 899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhC--------CccccChHHHHHHHHHHHHHHHHHHHHHHHHhHH-----HHH-HhcCc
Q 015905          213 IVMTSLSTATAVFVTPLLSLLLIG--------KRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPR-----ICN-AIRPF  278 (398)
Q Consensus       213 l~mt~istlla~~~~Plll~ll~g--------~~v~vd~~~i~~~Ll~~VllPl~lG~llr~~~p~-----~a~-~l~~~  278 (398)
                      +++|.+||+++++++|++++++.|        +.+++|.++++++++.++++|+++|+++|++.++     +.+ +..+.
T Consensus       135 v~lt~~stLl~~~~~P~l~~ll~~~~~~~~~~~~v~v~~~~~~~~l~~~v~lPlvlG~~lr~~~~~~~~~~~~~~~~~~~  214 (328)
T TIGR00832       135 LVLVAVNSLFQVFLYAPLAWLLLGVSPIWLGLTVITVPWETIAKSVLIYLGIPLIAGILTRYWLLKRKGREWYEKVFLPK  214 (328)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCccccccceeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHhh
Confidence            999999999999999999999877        4579999999999999999999999999999984     333 77788


Q ss_pred             CChhHHHHHHHHHHHHHHhhhhhhhhhhh--HHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhhheeeecccccHH
Q 015905          279 LPPLSVLVTACCVGAPLAINIESVMSPFG--LTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSL  356 (398)
Q Consensus       279 l~~~s~l~llliv~~~~~~n~~~i~~~~~--~~i~la~~ll~l~gf~lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~~  356 (398)
                      ++.++.+++.+++...++.|++.+.+...  ..+.+++++++.++|.+||+++| .++.++   +|+||+++|+|+||.+
T Consensus       215 ~~~~~~l~l~~iv~~~~~~~~~~i~~~~~~i~~~~~~v~l~~~~~~~lg~~~~r-~~~l~~---~~~~a~~~e~g~qN~~  290 (328)
T TIGR00832       215 ISPWSLIALLFTIVLLFAFQGETIIELPLDIALIAIPLLIYFYIMFFLTFALAK-KLGLPY---SITAPAAFTGASNNFE  290 (328)
T ss_pred             cchHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCcCh---hhhhhheehhhhhhHH
Confidence            88888888889888888888887776532  23344678899999999999997 568876   8999999999999999


Q ss_pred             HHHHHHHHhCCCCcchhHHHHHHHH
Q 015905          357 LALALANRFFQDPLVSVPPAISTVI  381 (398)
Q Consensus       357 Lal~LA~~~F~~p~valp~~iy~v~  381 (398)
                      +|+++|.++|++++.+.++++|...
T Consensus       291 lai~lA~~~f~~~~~~a~~~~~~~l  315 (328)
T TIGR00832       291 LAIAVAISLFGLNSGAALATVVGPL  315 (328)
T ss_pred             HHHHHHHHhCCCCcccHHHHHhhhh
Confidence            9999999999875555555555553

The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.

>TIGR00841 bass bile acid transporter

Probab=100.00  E-value=2e-41  Score=331.15  Aligned_cols=262  Identities=30%  Similarity=0.471  Sum_probs=239.3

Q ss_pred             HHHHHHHhhcCCCCcccccCHHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchh
Q 015905          116 LGSTMLALVFPPSFTWFTASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQ  195 (398)
Q Consensus       116 l~~~~lg~~~P~~~~~l~l~~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~  195 (398)
                      +..++++++.       +++.+|+++.++|||.+..+++.|++++|+++|+++    ..++++++.+.|+++++||||++
T Consensus        14 l~~~m~~~G~-------~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~----~~~~l~~~~~~glvL~~~~P~~~   82 (286)
T TIGR00841        14 LFLIMFSMGC-------TLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLA----KVFKLPPELAVGVLIVGCCPGGT   82 (286)
T ss_pred             HHHHHHHccC-------CCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHH----HHhCCCHHHHHHHHheeeCCCch
Confidence            5556677776       889999999999999999999999999999999998    57899999999999999999999


Q ss_pred             hHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCCcc----ccChHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 015905          196 LSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRL----PVDVKGMVSSILQIVVVPIAAGLLLNRFFPRI  271 (398)
Q Consensus       196 ~Snv~T~la~Gd~aaLsl~mt~istlla~~~~Plll~ll~g~~v----~vd~~~i~~~Ll~~VllPl~lG~llr~~~p~~  271 (398)
                      +|++||+++|||. +++..++.++|+++++++|+++.++.+...    ++|+++++++ +.++++|+++|+++|++.|++
T Consensus        83 ~s~v~t~~~~gn~-~la~~~~~~stlls~vt~Pl~l~~~~~~~~~~~~~v~~~~i~~~-~~~v~vPl~lG~~~r~~~p~~  160 (286)
T TIGR00841        83 ASNVFTYLLKGDM-ALSISMTTCSTLLALGMMPLLLYIYAKMWVDGTLVVPYLGIGLS-LVAVLIPVSIGMLVKHKLPQI  160 (286)
T ss_pred             HHHHHHHHhCCCH-hhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCceecHHHHHHH-HHHHHHHHHHHHHHHHHhHHH
Confidence            9999999999999 899999999999999999999999976544    4999999999 889999999999999999999


Q ss_pred             HHHhcCcCChhHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhhheeeecc
Q 015905          272 CNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETG  351 (398)
Q Consensus       272 a~~l~~~l~~~s~l~llliv~~~~~~n~~~i~~~~~~~i~la~~ll~l~gf~lGylla~~l~~~~~~~~~~~~tl~~~tG  351 (398)
                      +++.++ .+.++.+.+.+++...++.+.+.+.+. .+.++++++++++++|.+||+++| .++.++   +|+||+++|+|
T Consensus       161 ~~~~~~-~~~~s~~~l~liv~~~~~~~~~~i~~~-~~~~~~~~~ll~~~~~~~g~~~a~-~~~l~~---~~~~t~~~~~g  234 (286)
T TIGR00841       161 AKIILK-VGLISVFLLSVIIAVVGGINVENLATI-GPLLLLVGILLPLAGFLLGYLLAK-LAGLPW---ARCRTISIEVG  234 (286)
T ss_pred             HHHHHh-CchHHHHHHHHHHHHHHHhhHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHH-HhCCCH---hhheeeeeeee
Confidence            888888 889999988888888888887777664 456778899999999999999997 467776   79999999999


Q ss_pred             cccHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 015905          352 MQSSLLALALANRFFQDPLVSVPPAISTVIMSLMGFFLVMLWAKKS  397 (398)
Q Consensus       352 ~rN~~Lal~LA~~~F~~p~valp~~iy~v~q~i~g~~la~~~~~~~  397 (398)
                      +||+++|+++|.++|+ |+.++|+++|.++|++.+..++.+|+|+.
T Consensus       235 ~qN~~lal~la~~~f~-~~~a~~~~~~~v~~~~~~~~~a~~~~~~~  279 (286)
T TIGR00841       235 MQNSQLCSTIAQLSFS-PEVAVPSAIFPLIYALFQLAFALLFLIIH  279 (286)
T ss_pred             cccHHHHHHHHHHhcC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999997 89999999999999999999999998763

Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.

>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)

Probab=100.00  E-value=7.9e-36  Score=295.08  Aligned_cols=280  Identities=22%  Similarity=0.341  Sum_probs=245.6

Q ss_pred             hHHHHHHHHHHHHHhhcCCCCcc----------------------cccCHHHHHHHHhchhHHHHHHHHHHhHHHHHHHH
Q 015905          109 SFLPHVVLGSTMLALVFPPSFTW----------------------FTASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYI  166 (398)
Q Consensus       109 ~~l~~~il~~~~lg~~~P~~~~~----------------------l~l~~~dl~~~l~~P~~l~~gl~~qfvimPlla~~  166 (398)
                      +|+++.+++++.+|+.+|+....                      ++++.+|+++.++|||.++.++..+|+++|+++++
T Consensus         1 ~~fl~~l~~ai~la~~~P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~   80 (313)
T PF13593_consen    1 QWFLLGLLLAILLAYLFPAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFG   80 (313)
T ss_pred             CchHHHHHHHHHHHHHcCcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence            46788888999999999987542                      24999999999999999999999999999999999


Q ss_pred             HHhhhhhccCCChhHHHHHHHHhcCCchhhHHH-HHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhh-CCccccChH
Q 015905          167 FGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNY-ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLI-GKRLPVDVK  244 (398)
Q Consensus       167 l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv-~T~la~Gd~aaLsl~mt~istlla~~~~Plll~ll~-g~~v~vd~~  244 (398)
                      +.++.  ...++++++.|+++++|+|++..|++ ||+.+|||. ++++.++.++|+++++++|+++.++. |+.+++|..
T Consensus        81 ~~~l~--~~~~~~~l~~Gl~~~~~lPtTv~S~v~~T~~AgGN~-a~Al~~~~~snllgv~ltP~ll~l~l~~~~~~~~~~  157 (313)
T PF13593_consen   81 LSRLF--PAFLPPELALGLLILACLPTTVSSSVVLTRLAGGNV-ALALFNAVLSNLLGVFLTPLLLLLLLGGSSVSIDYA  157 (313)
T ss_pred             HHHHh--hccCCHHHHHHHHHHhhCCchhhHHHHHHHHcCCCH-HHHHHHHHHHhhhhHhHHHHHHHHHhcCCcCCCCHH
Confidence            98521  12478999999999999999998874 999999999 89999999999999999999999999 788999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCcCChhHHHHHHHHHHHHHHhhh-hhhhhhhh----HHHHHHHHHHHH
Q 015905          245 GMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINI-ESVMSPFG----LTILLLIITFHL  319 (398)
Q Consensus       245 ~i~~~Ll~~VllPl~lG~llr~~~p~~a~~l~~~l~~~s~l~llliv~~~~~~n~-~~i~~~~~----~~i~la~~ll~l  319 (398)
                      ++++++...+++|+++|+++|++.+++.+|.++.++.++..+++++++..++... +...+...    ..+....+.++.
T Consensus       158 ~~~~~L~~~vllP~~~Gq~~r~~~~~~~~~~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~  237 (313)
T PF13593_consen  158 SVLIKLVLTVLLPLVLGQLLRRWVPKWVARHKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLL  237 (313)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999887651 22222111    233455777888


Q ss_pred             HHHHHHHHHHHHhhcCCccccchhhheeeecccccHHHHHHHHHHhCCC-C---cchhHHHHHHHHHHHHHHHHHHHHhh
Q 015905          320 SAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQD-P---LVSVPPAISTVIMSLMGFFLVMLWAK  395 (398)
Q Consensus       320 ~gf~lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~~Lal~LA~~~F~~-p---~valp~~iy~v~q~i~g~~la~~~~~  395 (398)
                      ..+.++|..+| .++.++   +|++++.|++++||.++|+.++...|++ |   .+.+|.++||..|.++++.++.+|+|
T Consensus       238 ~~l~~~~~~~r-~~~~~~---~d~iA~~F~gs~Ksl~~gvpl~~~lf~~~~~~~~~~lP~~iyh~~Ql~~~s~la~~~~r  313 (313)
T PF13593_consen  238 VVLVLGWLAAR-LLGFSR---PDRIAVLFCGSQKSLALGVPLASILFPGHPDLGLIVLPLMIYHPLQLFVGSFLASRLAR  313 (313)
T ss_pred             HHHHHHHHHHh-hcCCCh---hhEEEEEEEcCcCcchhHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHcC
Confidence            89999999997 468776   8999999999999999999999999984 4   57899999999999999999999976

>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]

Probab=100.00  E-value=3e-31  Score=258.86  Aligned_cols=290  Identities=14%  Similarity=0.202  Sum_probs=250.2

Q ss_pred             cchHHHHHHHHHhHHHHHHHHHHHHH----hhcCCCCccc-------------------------ccCHHHHHHHHhchh
Q 015905           97 EFSLVNILKQSNSFLPHVVLGSTMLA----LVFPPSFTWF-------------------------TASEKDFIEAFKRPA  147 (398)
Q Consensus        97 ~~~~~~~l~~~~~~l~~~il~~~~lg----~~~P~~~~~l-------------------------~l~~~dl~~~l~~P~  147 (398)
                      +++..+.+++++|+++.|+..|..+|    ..+|+.++.+                         ++|.|+++++.|+||
T Consensus         2 ~~~~~k~l~~~dk~l~~wv~l~i~~Gi~lG~~~p~~~~~l~~~~~~~~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k   81 (342)
T COG0798           2 KMKEKKKLSFLDKYLTLWVFLAIAIGILLGVHFPGLAQLLGKLEFGGVSIPIAIGLILMMYPPMLKIDFEELKNVFKDPK   81 (342)
T ss_pred             chhHhhhhhHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccceeCceehhHHHHHHHHHhHHHhcCCHHHHHHHHhcch
Confidence            45667889999999998887777655    4566644332                         399999999999999


Q ss_pred             HHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHH
Q 015905          148 AIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVT  227 (398)
Q Consensus       148 ~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~aaLsl~mt~istlla~~~~  227 (398)
                      .++..++.||++.|+++|++++   .+++..|++.+|++++|.+||..++.+|+++++||. +++++++.++.++++++.
T Consensus        82 ~L~lsL~~Nwii~P~lm~~la~---~fl~~~pey~~GlILlglApC~aMVivw~~La~Gd~-~~tlv~Va~n~l~qiv~y  157 (342)
T COG0798          82 PLILSLFVNWIIGPLLMFALAW---FFLPDEPEYRAGLILLGLAPCIAMVIVWSGLAKGDR-ELTLVLVAFNSLLQIVLY  157 (342)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH---HHhCCCHHHHHHHHHHHhhhhHHHHHHHHhhccCcH-hhhhHHHHHHHHHHHHHH
Confidence            9999999999999999999997   355888899999999999999999999999999999 899999999999999999


Q ss_pred             HHHHHHhhCCc-cccChHHHHHHHHHHHHHHHHHHHHHHHHhHHH------HHHhcCcCChhHHHHHHHHHHHHHHhhhh
Q 015905          228 PLLSLLLIGKR-LPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRI------CNAIRPFLPPLSVLVTACCVGAPLAINIE  300 (398)
Q Consensus       228 Plll~ll~g~~-v~vd~~~i~~~Ll~~VllPl~lG~llr~~~p~~------a~~l~~~l~~~s~l~llliv~~~~~~n~~  300 (398)
                      |.+.++|.|.. ++++++++.+++++.+.+|+++|++.|+...|+      .++..|..++++..++++.++..|+.+.+
T Consensus       158 ~~~~~~~l~v~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i~~k~kg~~~~~~~f~p~ispi~ligLl~TivliF~~qg~  237 (342)
T COG0798         158 APLGKFFLGVISISVPFWTIAKSVLLYLGIPLIAGVLTRYILIKKKGREWYESRFLPKISPIALIGLLLTIVLIFAFQGE  237 (342)
T ss_pred             HHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHhhcChHHHHHHHHHHHHHHHHhHH
Confidence            99999998864 899999999999999999999999999986542      46788899999999999999999999999


Q ss_pred             hhhhhhhH--HHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhhheeeecccccHHHHHHHHHHhCC-CCcchhHHHH
Q 015905          301 SVMSPFGL--TILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQ-DPLVSVPPAI  377 (398)
Q Consensus       301 ~i~~~~~~--~i~la~~ll~l~gf~lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~~Lal~LA~~~F~-~p~valp~~i  377 (398)
                      .+.+++..  .+.+..++.....+.++|+++|. .+.++   +++.+++++++.+|..+|+++|.+.|+ +..+|+.+++
T Consensus       238 ~Iv~~p~~i~liAIpl~iy~~~~~~i~~~i~k~-lgl~y---~~~~~~~ft~aSNnfeLAiAvAi~lfG~~s~aA~a~vi  313 (342)
T COG0798         238 QIVEQPLDILLIAIPLLIYFLLMFFISYFIAKA-LGLPY---EDAAALVFTGASNNFELAIAVAIALFGLTSGAALATVV  313 (342)
T ss_pred             HHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCCh---hhhhceeeeeccccHHHHHHHHHHhcCccccchhhhhc
Confidence            99887542  34455777788899999999974 68887   899999999999999999999999998 6678888888


Q ss_pred             HHHHHHHHHHHHHHHHh
Q 015905          378 STVIMSLMGFFLVMLWA  394 (398)
Q Consensus       378 y~v~q~i~g~~la~~~~  394 (398)
                      ..+++...=-.++..++
T Consensus       314 gpLvEVpvml~lV~v~~  330 (342)
T COG0798         314 GPLVEVPVMLGLVKVAL  330 (342)
T ss_pred             cchhhHHHHHHHHHHHH
Confidence            88877765555554443

>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes

Probab=99.97  E-value=1.4e-29  Score=233.00  Aligned_cols=179  Identities=29%  Similarity=0.531  Sum_probs=153.1

Q ss_pred             HHHHHHHHhhcCCCCcccccCHHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCch
Q 015905          115 VLGSTMLALVFPPSFTWFTASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGA  194 (398)
Q Consensus       115 il~~~~lg~~~P~~~~~l~l~~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg  194 (398)
                      .+..+++++++       ++++||+++..||||.+..++++||+++|+++|++++   .++++++++++|+++++||||+
T Consensus         3 ~l~~~mf~~gl-------~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~---~~~~~~~~~~~Gl~l~~~~P~~   72 (187)
T PF01758_consen    3 LLFLMMFSMGL-------SLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAW---LLLPLSPALALGLLLVAACPGG   72 (187)
T ss_dssp             HHHHHHHHHHH-------C--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH----HHTT--HHHHHHHHHHHHS-B-
T ss_pred             hhhHHHHHhhh-------cccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHH---HHhcCCHHHHHHHHHHhcCCcH
Confidence            34556777776       8999999999999999999999999999999999984   5789999999999999999999


Q ss_pred             hhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCCccccC---hHHHHHHHHHHHHHHHHHHHHHHHHhH--
Q 015905          195 QLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVD---VKGMVSSILQIVVVPIAAGLLLNRFFP--  269 (398)
Q Consensus       195 ~~Snv~T~la~Gd~aaLsl~mt~istlla~~~~Plll~ll~g~~v~vd---~~~i~~~Ll~~VllPl~lG~llr~~~p--  269 (398)
                      ++||+||+++|||. ++++++|.++++++++++|+++.++.+...++|   .++++.+++.++++|+++|+++|++.|  
T Consensus        73 ~~s~~~t~l~~Gd~-~ls~~lt~istll~~~~~P~~~~l~~~~~~~~~~~~~~~~~~~~l~~v~lPl~lG~l~r~~~p~~  151 (187)
T PF01758_consen   73 PASNVFTYLAGGDV-ALSVSLTLISTLLAPFLMPLLLYLLSGGSVDVDSISPWDIIKSLLLIVILPLLLGMLLRKYLPRE  151 (187)
T ss_dssp             THHHHHHHHTT--H-HHHHHHHHHHHHHHHHHHHHHHHHHH-GGGHHH---HHHHHHHHHHHTHHHHHHHHHHHHHHG-G
T ss_pred             HHHHHHHHHhCCCc-ccccceeeHHHHHHHHHHHHHHHHHhccccCCchhhHHHHHHHHHheehHHHhHHHHHHHHhhHH
Confidence            99999999999999 899999999999999999999999998877777   999999999999999999999999999  


Q ss_pred             HHHHHhcCcCChhHHHHHHHHHHHHHHhhhhhhhh
Q 015905          270 RICNAIRPFLPPLSVLVTACCVGAPLAINIESVMS  304 (398)
Q Consensus       270 ~~a~~l~~~l~~~s~l~llliv~~~~~~n~~~i~~  304 (398)
                      +..+++++..+.++.+++++++...++.|.+.+.+
T Consensus       152 ~~~~~~~~~~~~~s~~~l~~~i~~~~~~~~~~i~~  186 (187)
T PF01758_consen  152 KFARRLKPFLKPLSFILLLLIIVLIFASNASVIAS  186 (187)
T ss_dssp             GG-HHHHCCHHHHHHHHHHHHHHHHHHHTH-----
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHhcccccC
Confidence            88899999999999999999999888888776543

They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.

>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]

Probab=99.95  E-value=3.2e-28  Score=242.72  Aligned_cols=238  Identities=46%  Similarity=0.703  Sum_probs=213.7

Q ss_pred             ccCHHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhc-CCCchhh
Q 015905          133 TASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLT-DPPLAPL  211 (398)
Q Consensus       133 ~l~~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la-~Gd~aaL  211 (398)
                      +.|.+|+++.++||+.+.+|++.||++||+.+|.++    ..+.+|...++|++++.|++++..++..+++. +||+ .+
T Consensus       129 ~~~~~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~----~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v-~l  203 (371)
T KOG2718|consen  129 KLDMDLFAGMIKRPTPLALGFVPQYLIMPLLGFLLS----KVLLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDV-TL  203 (371)
T ss_pred             CccHHHHhhHhhCCcceeehHHHHHHHHHHHHHhhh----hHhhCCccccceeEEEEeccCCcchhhheeecCCcch-hh
Confidence            699999999999999999999999999999999998    57888888878999999998888887665555 9999 89


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCcCChhHHHHHHHHH
Q 015905          212 SIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCV  291 (398)
Q Consensus       212 sl~mt~istlla~~~~Plll~ll~g~~v~vd~~~i~~~Ll~~VllPl~lG~llr~~~p~~a~~l~~~l~~~s~l~llliv  291 (398)
                      ++.||.++|+.+++++|++..++.+..++.|...+..+++..+.+|+++|.++|+++|+....+.+..+.++.....+++
T Consensus       204 silmT~~stv~avi~~pl~s~~l~~~l~~~d~~~v~~s~~~vv~~pl~lG~lL~~~~~k~t~~i~~~~~~vsv~~t~l~~  283 (371)
T KOG2718|consen  204 SILMTTISTVLAVILTPLLSILLGRALIPVDALGVIASILQVVGLPLALGLLLNKWFPKRTVAIEPGLPPVSVCLTILCL  283 (371)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhchhhhcccchhhhhhhhHHhHHHHHHHHHhcccCccceeeeecCCCchHHHhhhhhh
Confidence            99999999999999999999999888899999999889999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhhheeeecccccHHHHHHHHHHhCCCCcc
Q 015905          292 GAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQDPLV  371 (398)
Q Consensus       292 ~~~~~~n~~~i~~~~~~~i~la~~ll~l~gf~lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~~Lal~LA~~~F~~p~v  371 (398)
                      ......|.+.+.. .++.++.++..+++.||..||+.++..   -.| ++++||+++|+||||..+++++++..++||.+
T Consensus       284 ~~p~~~n~~~~~~-~~~~i~~~~~~l~l~g~l~~Y~~~~~~---~~~-~a~~~tisie~g~q~s~~a~~l~t~~~~dpl~  358 (371)
T KOG2718|consen  284 AFPPGENGYLFLF-FGYQILLLGAALPLAGFLAGYLLSFSP---LDD-VATARTISIETGMQNSLLALALATKHLQDPLV  358 (371)
T ss_pred             cCChhhhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhccc---cch-hhhhcchHHHhccchhHHHHHHhhcccCCcee
Confidence            8888888877776 788999999999999999999986322   221 25899999999999999999999999999998


Q ss_pred             hhHHHHHHH
Q 015905          372 SVPPAISTV  380 (398)
Q Consensus       372 alp~~iy~v  380 (398)
                      +.|++...+
T Consensus       359 ~~~~~~s~v  367 (371)
T KOG2718|consen  359 VVPPATSSV  367 (371)
T ss_pred             eeccchhhh
Confidence            888766544

>KOG4821 consensus Predicted Na+-dependent cotransporter [General function prediction only]

Probab=98.87  E-value=2.6e-08  Score=92.44  Aligned_cols=173  Identities=14%  Similarity=0.180  Sum_probs=134.8

Q ss_pred             HHHHHHHH-HhHHHHHHHHHHHHHhhcCCCCc-----------------------ccccCHHHHHHHHhchhHHHHHHHH
Q 015905          100 LVNILKQS-NSFLPHVVLGSTMLALVFPPSFT-----------------------WFTASEKDFIEAFKRPAAIFAGYVG  155 (398)
Q Consensus       100 ~~~~l~~~-~~~l~~~il~~~~lg~~~P~~~~-----------------------~l~l~~~dl~~~l~~P~~l~~gl~~  155 (398)
                      +++..++. ++|+..-+.++...+-.-|+...                       .++++.|++..+.++|+..+++++.
T Consensus        13 ~~R~~e~~~~~Wf~~~I~~~i~~aKL~p~~G~~gG~Lk~~ys~~yI~va~IF~~SGL~LkTE~l~aA~~~w~LhLFilI~   92 (287)
T KOG4821|consen   13 AHRVTEFLKSQWFFICIAILIVIAKLAPNFGRDGGLLKGQYSIGYICVAWIFLQSGLGLKTESLMAAMLNWRLHLFILIL   92 (287)
T ss_pred             HHHHHHHHhcchHHHHHHHhhhHhhhCCCCCccCCcccCceeEEeEEEEEEEeecCccccHHHHHHHHhCCchHHHHHHH
Confidence            44445555 46777777777777777776531                       1249999999999999999999999


Q ss_pred             HHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHH-HHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHh
Q 015905          156 QFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNY-ATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL  234 (398)
Q Consensus       156 qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv-~T~la~Gd~aaLsl~mt~istlla~~~~Plll~ll  234 (398)
                      ...+.|...|++.... ..-+.+.++..|+.+.+|.|+...|++ .|..+|||.+++.+.-...+.++.+...|-....+
T Consensus        93 ~Ll~tPs~~~Lf~~~~-~~~~i~~wLl~GL~~~~CMPttvSS~ViLT~~aGGNa~A~~v~S~f~g~L~~~~i~~~l~q~L  171 (287)
T KOG4821|consen   93 SLLITPSIVYLFCCAV-KAAKIDDWLLIGLILTACMPTTVSSNVILTTNAGGNASALCVCSVFIGNLLGAFITPALVQML  171 (287)
T ss_pred             HHHHhHHHHHHHHHHH-hCcchhHHHHhhheeeeecCCccccceeeeeccCccHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence            9999999999987421 334577899999999999999999997 89999999866666667777888888888888776


Q ss_pred             hCC------------ccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 015905          235 IGK------------RLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICN  273 (398)
Q Consensus       235 ~g~------------~v~vd~~~i~~~Ll~~VllPl~lG~llr~~~p~~a~  273 (398)
                      +..            .+-.-+.-++++....+++|...|...+..+|+-+.
T Consensus       172 L~~~~~~~~~~a~g~gi~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  222 (287)
T KOG4821|consen  172 LNRAPFAYGNPATGNGIGALYGRVMKQVGLSVFVPLFVGQVIQNCFPKGTA  222 (287)
T ss_pred             HccCCccccCccccchHHHHHHHHHHhhcceEEehhhcccccccccCCcee
Confidence            421            222334456677778899999999999999887443

>KOG2718 consensus Na+-bile acid cotransporter [Inorganic ion transport and metabolism]

Probab=98.43  E-value=9.5e-08  Score=96.33  Aligned_cols=239  Identities=15%  Similarity=0.134  Sum_probs=160.2

Q ss_pred             ccccCHHHHHHHHhchhHHHHHHHHHHh-HHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcCCCch
Q 015905          131 WFTASEKDFIEAFKRPAAIFAGYVGQFV-VKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLA  209 (398)
Q Consensus       131 ~l~l~~~dl~~~l~~P~~l~~gl~~qfv-imPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~a  209 (398)
                      .++++.++++++.++++.+...+..|+- ++|...+...    ..+..++..+.....+.|+|++..+|.++.-.++|+ 
T Consensus        58 ~c~~~i~~~~~h~~~~~g~~v~~~~~~~~~lp~~~~~~~----v~~~~~~~~~~t~l~~~~~~~gl~~~~ls~g~~~~~-  132 (371)
T KOG2718|consen   58 GCNLTISLLWRHSLRSWGILVALKEAFGLILPLLVFLLK----VLFLLDPLLAFTWLVTGCFPPGLLSNMLSFGIKLDM-  132 (371)
T ss_pred             ccceeccchhhhhcCcceeeeehhhccccchhHHHHHHH----HHhhcCCcccceEEEeCccccHHHHHHHHHhcCccH-
Confidence            3467888899999999999999999999 9999999998    577888888889999999999999999999999999 


Q ss_pred             hhHHHHHHHHHHHHHHHHH-HHHHHhh----CCccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCcCChhHH
Q 015905          210 PLSIVMTSLSTATAVFVTP-LLSLLLI----GKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSV  284 (398)
Q Consensus       210 aLsl~mt~istlla~~~~P-lll~ll~----g~~v~vd~~~i~~~Ll~~VllPl~lG~llr~~~p~~a~~l~~~l~~~s~  284 (398)
                      .+...++.-.+.+++.++| ++++=+.    +....+|...-..-++..-+.|.-.|..+++..++-...+......++.
T Consensus       133 ~~~~~~~~rP~~~~lG~v~q~~i~pl~~f~~~~~~~lP~~~~ag~~Lvtc~~p~g~~~~~~~~~~~g~v~lsilmT~~st  212 (371)
T KOG2718|consen  133 DLFAGMIKRPTPLALGFVPQYLIMPLLGFLLSKVLLLPAALAAGLLLVTCVSPGGGGNYLTSKRLPGDVTLSILMTTIST  212 (371)
T ss_pred             HHHhhHhhCCcceeehHHHHHHHHHHHHHhhhhHhhCCccccceeEEEEeccCCcchhhheeecCCcchhhHHHHHHHHH
Confidence            7999999999999988888 3322121    2233344333122233466789999999998876544444444433443


Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHH--HHHHHHHHHHhhcCCccccchhhheeeecccccHHHHHHHH
Q 015905          285 LVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSA--FVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALA  362 (398)
Q Consensus       285 l~llliv~~~~~~n~~~i~~~~~~~i~la~~ll~l~g--f~lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~~Lal~LA  362 (398)
                      ++.+++.-..-....+.+.......+  ..-.+...+  +.+|+++.+.         -.+++..++.++||.+++.++-
T Consensus       213 v~avi~~pl~s~~l~~~l~~~d~~~v--~~s~~~vv~~pl~lG~lL~~~---------~~k~t~~i~~~~~~vsv~~t~l  281 (371)
T KOG2718|consen  213 VLAVILTPLLSILLGRALIPVDALGV--IASILQVVGLPLALGLLLNKW---------FPKRTVAIEPGLPPVSVCLTIL  281 (371)
T ss_pred             HHHHHHHHHHHHhhchhhhcccchhh--hhhhhHHhHHHHHHHHHhccc---------CccceeeeecCCCchHHHhhhh
Confidence            32222111111111222222112112  223445555  8888877531         3568889999999999999999


Q ss_pred             HHhCCCCcc----hhHHHHHHHHHHHHHH
Q 015905          363 NRFFQDPLV----SVPPAISTVIMSLMGF  387 (398)
Q Consensus       363 ~~~F~~p~v----alp~~iy~v~q~i~g~  387 (398)
                      .-.|+ |..    -.. ..|.++|.-...
T Consensus       282 ~~~~p-~~~n~~~~~~-~~~~i~~~~~~l  308 (371)
T KOG2718|consen  282 CLAFP-PGENGYLFLF-FGYQILLLGAAL  308 (371)
T ss_pred             hhcCC-hhhhhHHHHH-HHHHHHHHHHHH
Confidence            88886 432    222 445555544443

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family

Probab=98.29  E-value=1.4e-05  Score=79.46  Aligned_cols=86  Identities=17%  Similarity=0.213  Sum_probs=79.6

Q ss_pred             hchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHHHHHHHHH
Q 015905          144 KRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATA  223 (398)
Q Consensus       144 ~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~aaLsl~mt~istlla  223 (398)
                      ++++......+..++++|+++++++    ..++++++.....++++++|.+..+.+++..-|+|. .++...+.++|+++
T Consensus       235 ~~~~~~~~~~~~klil~P~i~~~~~----~~~~l~~~~~~~~vl~aa~P~a~~~~i~A~~y~~~~-~~aa~~v~~sT~ls  309 (321)
T TIGR00946       235 LGVRDAILALIVRFLVQPAVMAGIS----KLIGLRGLELSVAILQAALPGGAVAAVLATEYEVDV-ELASTAVTLSTVLS  309 (321)
T ss_pred             cChHHHHHHHHHHHHHHHHHHHHHH----HHhCCChHHHHHHHHHHcCChhhHHHHHHHHhCCCH-HHHHHHHHHHHHHH
Confidence            4557788888999999999999998    578999999999999999999999999999999999 89999999999999


Q ss_pred             HHHHHHHHHHh
Q 015905          224 VFVTPLLSLLL  234 (398)
Q Consensus       224 ~~~~Plll~ll  234 (398)
                      .+++|++++++
T Consensus       310 ~~tlp~~~~l~  320 (321)
T TIGR00946       310 LISLPLFIILL  320 (321)
T ss_pred             HHHHHHHHHHh
Confidence            99999999875

>PRK09903 putative transporter YfdV; Provisional

Probab=97.98  E-value=0.00011  Score=73.06  Aligned_cols=83  Identities=13%  Similarity=0.039  Sum_probs=75.3

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHH
Q 015905          147 AAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFV  226 (398)
Q Consensus       147 ~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~aaLsl~mt~istlla~~~  226 (398)
                      +....+.+..+++.|++++++.    ..+++++....-+++++++|.+..+.+++..-|+|. .++...+.+||+++.++
T Consensus       228 ~~~~~~~~~Kli~~P~i~~~~~----~~~~l~~~~~~v~vl~aa~P~a~~~~i~A~~y~~~~-~~aa~~v~~sTlls~iT  302 (314)
T PRK09903        228 AEIAYNTFLKLILMPLALLLVG----MACHLNSEHLQMMVLAGALPPAFSGIIIASRFNVYT-RTGTASLAVSVLGFVVT  302 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHcCCCcHHHHHHHHHHcccHHHHHHHHHHHHcccH-HHHHHHHHHHHHHHHHH
Confidence            3455677889999999998876    467999999989999999999999999999999999 89999999999999999


Q ss_pred             HHHHHHHh
Q 015905          227 TPLLSLLL  234 (398)
Q Consensus       227 ~Plll~ll  234 (398)
                      +|++++++
T Consensus       303 lpl~~~l~  310 (314)
T PRK09903        303 APLWIYVS  310 (314)
T ss_pred             HHHHHHHH
Confidence            99999875

>PRK12460 2-keto-3-deoxygluconate permease; Provisional

Probab=97.80  E-value=0.00084  Score=66.50  Aligned_cols=254  Identities=17%  Similarity=0.228  Sum_probs=132.3

Q ss_pred             HHHHHHHHHHHhhcCCCCccc------------------------ccCHHHHHHHHhchhHHHHHHHHHHhHHHHHHHHH
Q 015905          112 PHVVLGSTMLALVFPPSFTWF------------------------TASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIF  167 (398)
Q Consensus       112 ~~~il~~~~lg~~~P~~~~~l------------------------~l~~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l  167 (398)
                      .+=+++++.+.-++|+.+..=                        +++.|+-.+.+||-.-+   ++..+++--++++++
T Consensus        16 ~vPl~lga~inTf~P~~l~iG~fT~alf~~g~~~il~~~~~~~Ga~I~~k~~~~~l~kg~~l---~~~K~~~~~~~g~~~   92 (312)
T PRK12460         16 VVPLLIGALINTFFPQALEIGGFTTALFKTGAAPLLGAFLLCMGAQISLKAAPQALLKGGVL---TITKLGVAIVIGLLV   92 (312)
T ss_pred             HHHHHHHHHHHhccCcchhhCcccHHHHhcChHHHHHHHHHHhcCeeeccccchhhhhhhhh---hhHHHHHHHHHHHHH
Confidence            333566677777888764210                        38888888888875433   234666666777777


Q ss_pred             HhhhhhccCCChhHHHHHHHHh---c---CCchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCC--cc
Q 015905          168 GTISVSVFGLPTPIGAGIMLVS---C---VSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGK--RL  239 (398)
Q Consensus       168 ~~~~~~~~~l~~~la~GliL~~---~---~Pgg~~Snv~T~la~Gd~aaLsl~mt~istlla~~~~Plll~ll~g~--~v  239 (398)
                      +    ++++.+.-.  |+-.++   +   +=|+.....+.+.-+-++ .-+.+.+.+  --.    |+...+-+|.  -.
T Consensus        93 ~----~~~g~~g~~--Gls~laiiaa~~~~Ng~ly~al~~~yG~~~d-~gA~~~~sl--~~G----Pf~tm~aLga~gLA  159 (312)
T PRK12460         93 G----KFFGAEGIF--GLSGLAIVAAMSNSNGGLYAALMGEFGDERD-VGAISILSL--NDG----PFFTMLALGAAGLA  159 (312)
T ss_pred             H----HHcCccccc--chHHHHHHHHHhcCcHHHHHHHHHHcCCHhh-hhHHhhhhh--ccC----cHHHHHHHHHHHHh
Confidence            7    567765522  322222   2   123333333444433322 233333322  223    3333333232  13


Q ss_pred             ccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCcCChhHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHH
Q 015905          240 PVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHL  319 (398)
Q Consensus       240 ~vd~~~i~~~Ll~~VllPl~lG~llr~~~p~~a~~l~~~l~~~s~l~llliv~~~~~~n~~~i~~~~~~~i~la~~ll~l  319 (398)
                      ++|+..    +. -.++|+++|++++...+++.+.+++-.+..-   .+.++..-+..|-+++.+ .|+.-++..++...
T Consensus       160 ~ip~~~----lv-~lilpILiGmilGNld~~~~~~l~~Gi~f~I---~f~~f~LG~~lnl~~I~~-~G~~GIlL~v~vv~  230 (312)
T PRK12460        160 NIPIMA----LV-AALLPLVLGMILGNLDPDMRKFLTKGGPLLI---PFFAFALGAGINLSMLLQ-AGLAGILLGVLVTI  230 (312)
T ss_pred             cCChHH----HH-HHHHHHHHHHHHhccchhhHHHHhccceEeH---HHHHHHhcCCeeHHHHHH-hChHHHHHHHHHHH
Confidence            456543    23 3799999999999988888888877765411   111111111234444554 35555555666777


Q ss_pred             HHHHHHHHHHHHhhcCCccccchhhheeeecccccH-HHHHHHHHH--hCCCCcch---hHHHHHHHHHHHHHHHHHHHH
Q 015905          320 SAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSS-LLALALANR--FFQDPLVS---VPPAISTVIMSLMGFFLVMLW  393 (398)
Q Consensus       320 ~gf~lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~-~Lal~LA~~--~F~~p~va---lp~~iy~v~q~i~g~~la~~~  393 (398)
                      +.+..+|+++| +++.++     +.++...+..-|. .-+.+++..  .+ .|.+.   .=++-..++..+...++..||
T Consensus       231 ~t~~~~~~i~r-llg~~~-----~~g~li~stAGnAIcgpAAVaAadP~~-~~~~~~Ataqvaa~vivTail~P~~t~~~  303 (312)
T PRK12460        231 VTGFFNIFADR-LVGGTG-----IAGAAASSTAGNAVATPLAIAAADPSL-APVAAAATAQVAASVIVTAILTPLLTSWV  303 (312)
T ss_pred             HHHHHHHHHHH-HhCCCh-----hHHHHHHHHhhHHHHHHHHHHHhchhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88889999997 456542     2333333223343 222223322  22 12211   112334456667777777777


Q ss_pred             hhcc
Q 015905          394 AKKS  397 (398)
Q Consensus       394 ~~~~  397 (398)
                      .||.
T Consensus       304 ~k~~  307 (312)
T PRK12460        304 AKKE  307 (312)
T ss_pred             HHHh
Confidence            6653

>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi

Probab=97.71  E-value=0.0037  Score=61.88  Aligned_cols=267  Identities=18%  Similarity=0.285  Sum_probs=141.2

Q ss_pred             HHHHHHHhH----HHHHHHHHHHHHhhcCCCCccc------------------------ccCHHHHHHHHhchhHHHHHH
Q 015905          102 NILKQSNSF----LPHVVLGSTMLALVFPPSFTWF------------------------TASEKDFIEAFKRPAAIFAGY  153 (398)
Q Consensus       102 ~~l~~~~~~----l~~~il~~~~lg~~~P~~~~~l------------------------~l~~~dl~~~l~~P~~l~~gl  153 (398)
                      ++++.++|.    +.+=+++++++.-++|+.++.+                        +++.|+..+.+||-..++   
T Consensus         2 kI~~~i~kiPGG~mvVPLllgalinTf~P~~l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll---   78 (314)
T PF03812_consen    2 KIKKTIEKIPGGMMVVPLLLGALINTFFPNALEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGVLL---   78 (314)
T ss_pred             ChhHhhccCCCceeHHHHHHHHHHHhcCCChhhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhHHH---
Confidence            455555554    5555666777777888776532                        389999999999854443   


Q ss_pred             HHHHhHHHHHHHHHHhhhhhccCCCh---hHHHHHHHHhcC------CchhhHHHHHHhcCCCchhhHHHHHHHHHHHHH
Q 015905          154 VGQFVVKPILGYIFGTISVSVFGLPT---PIGAGIMLVSCV------SGAQLSNYATFLTDPPLAPLSIVMTSLSTATAV  224 (398)
Q Consensus       154 ~~qfvimPlla~~l~~~~~~~~~l~~---~la~GliL~~~~------Pgg~~Snv~T~la~Gd~aaLsl~mt~istlla~  224 (398)
                      +..+++-=+++++++    ++++.+.   ....|+-.++..      =|+.....+...-+-++ .-+..      ++++
T Consensus        79 ~~K~~~~~~lgl~~~----~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~aL~~~yGd~~D-~gA~~------i~sl  147 (314)
T PF03812_consen   79 LVKFIIGALLGLLVG----KFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLALMGQYGDEED-VGAFS------ILSL  147 (314)
T ss_pred             HHHHHHHHHHHHHHH----HHcCccccccccccchHHHHHHHHHhcCCHHHHHHHHHHhCCHHH-hHHHH------HHHh
Confidence            457777767777777    4666553   222333222221      22223333333322222 22222      3344


Q ss_pred             HHHHHHHHHhhC--CccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCcCChhHHHHHHHHHHHHHHhhhhhh
Q 015905          225 FVTPLLSLLLIG--KRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESV  302 (398)
Q Consensus       225 ~~~Plll~ll~g--~~v~vd~~~i~~~Ll~~VllPl~lG~llr~~~p~~a~~l~~~l~~~s~l~llliv~~~~~~n~~~i  302 (398)
                      .--|+...+.+|  ...++|+..     +.-.++|+++|+++-..-|++.+.+.|-.+.+--+ +.+.++  -..|-..+
T Consensus       148 ~~GPf~tMl~LG~sG~a~ip~~~-----lv~~llP~iiG~iLGNLD~~~r~fl~~~~~~lIPF-~~f~lG--a~inl~~i  219 (314)
T PF03812_consen  148 NDGPFFTMLALGASGLANIPWMS-----LVAALLPIIIGMILGNLDPDFRKFLAPGVPILIPF-FGFALG--AGINLSNI  219 (314)
T ss_pred             hhhHHHHHHHHhhccccCCCHHH-----HHHHHHHHHHHHHHhcCCHHHHHHHhcCCCeeeeh-hhhhhc--CCCCHHHH
Confidence            445665555555  235788765     34678999999999999999888777765442211 111111  02233344


Q ss_pred             hhhhhH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhhheeeecccccH-HHHHHHHHH--hCCCCcchhH---H
Q 015905          303 MSPFGL-TILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSS-LLALALANR--FFQDPLVSVP---P  375 (398)
Q Consensus       303 ~~~~~~-~i~la~~ll~l~gf~lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~-~Lal~LA~~--~F~~p~valp---~  375 (398)
                      .+. +. .+++ .++..++.....|+.-|.+.+.+     .....+..+..-|. +.-.++|..  .| .|.+...   +
T Consensus       220 ~~a-Gl~GIlL-gv~~~~vtg~~~~~~dr~i~~~~-----g~aG~A~sstAGnavatPaaiA~~dP~~-~~~~~~ATaQv  291 (314)
T PF03812_consen  220 IKA-GLSGILL-GVIVVVVTGIPLYLADRLILKGN-----GVAGAAISSTAGNAVATPAAIAAADPSF-APYAASATAQV  291 (314)
T ss_pred             HHh-CcchHHH-HHHHHHHHhHHHHHHHHHHcCCC-----CceeehHHhhhhhhhhhhHHHHHhChhh-HhhHHHHHHHH
Confidence            432 22 2333 33333344444566666443322     22333444433343 333344432  22 2322211   2


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccC
Q 015905          376 AISTVIMSLMGFFLVMLWAKKSE  398 (398)
Q Consensus       376 ~iy~v~q~i~g~~la~~~~~~~~  398 (398)
                      +...++..+...++..+|.||-|
T Consensus       292 AaavIvTail~P~lt~~~~kr~k  314 (314)
T PF03812_consen  292 AAAVIVTAILTPILTSWWAKRFK  314 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcC
Confidence            34556777788888889988754

There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane

>COG0679 Predicted permeases [General function prediction only]

Probab=97.71  E-value=0.00071  Score=67.31  Aligned_cols=87  Identities=21%  Similarity=0.277  Sum_probs=78.5

Q ss_pred             hchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHHHHHHHHH
Q 015905          144 KRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATA  223 (398)
Q Consensus       144 ~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~aaLsl~mt~istlla  223 (398)
                      .+++.........++++|+++++.+    .+++++++....+++++++|++..+.+++...++|. .++...+.++|+++
T Consensus       222 ~~~~~~~~~~~~kll~~Pl~~~~~~----~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~~~~~~~-~laa~~i~ist~ls  296 (311)
T COG0679         222 SKPPIILIALSLKLLLAPLVALLVA----KLLGLSGLALQVLVLLSAMPTAVNAYVLARQYGGDP-RLAASTILLSTLLS  296 (311)
T ss_pred             ccchhHHHHHHHHHHHHHHHHHHHH----HHcCCChHHHHHHHHHhhCcHHhHHHHHHHHhCCCh-HHHHHHHHHHHHHH
Confidence            3456666777779999999999988    689999998888999999999999999999999999 89999999999999


Q ss_pred             HHHHHHHHHHhh
Q 015905          224 VFVTPLLSLLLI  235 (398)
Q Consensus       224 ~~~~Plll~ll~  235 (398)
                      .+++|.+...+.
T Consensus       297 ~~t~p~~~~~l~  308 (311)
T COG0679         297 LLTLPLLILLLL  308 (311)
T ss_pred             HHHHHHHHHHHh
Confidence            999999988774

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=97.62  E-value=0.00089  Score=67.74  Aligned_cols=80  Identities=15%  Similarity=0.118  Sum_probs=71.3

Q ss_pred             hHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHH
Q 015905          147 AAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFV  226 (398)
Q Consensus       147 ~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~aaLsl~mt~istlla~~~  226 (398)
                      +......+..++++|++++++.    ..++++++....+++.+++|.+..+.+++...+.|. ..+.....+++++++++
T Consensus       306 ~~~~~~~~~rlii~P~i~~~~~----~~~~l~~~~~~~~~~~~~~P~a~~~~~~a~~~~~~~-~~~s~~~~~~~~~~~~~  380 (385)
T PF03547_consen  306 KPSIIAVLVRLIILPLIGIGIV----FLLGLDGDMARVLILQAAMPTAINSFVIASLYGLDE-EEASSIVFWSTLLSIPT  380 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHH----HHHCCCHHHHHHHHHhccCCchHHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHH
Confidence            3444568889999999999997    578899999989999999999999999999999998 78889999999999999


Q ss_pred             HHHHH
Q 015905          227 TPLLS  231 (398)
Q Consensus       227 ~Plll  231 (398)
                      +|+|+
T Consensus       381 ~~~~~  385 (385)
T PF03547_consen  381 LPLWI  385 (385)
T ss_pred             HHHHC
Confidence            99973

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase

Probab=97.29  E-value=0.24  Score=49.65  Aligned_cols=241  Identities=16%  Similarity=0.179  Sum_probs=137.7

Q ss_pred             cCHHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHH-HHHHhcCCCchhhH
Q 015905          134 ASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN-YATFLTDPPLAPLS  212 (398)
Q Consensus       134 l~~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Sn-v~T~la~Gd~aaLs  212 (398)
                      ++++.+.+....+.......+...+..-+.+|.+.    +..+.|..-+    +.++.|||...- ++..-.|+|. ..-
T Consensus        42 ~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----r~~~~d~~TA----~~~~~PGg~s~m~~la~~~gad~-~~V  112 (318)
T PF05145_consen   42 FTPEVLAQLASWWPPMLLLLVVTLLLSLVGAWLLR----RISGLDRATA----FFASMPGGLSEMVALAEEYGADT-RRV  112 (318)
T ss_pred             cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHcCCChhHH----HHHcCCccHHHHHHHHHHcCCCh-hhh
Confidence            48888888888888888777777777777778776    5677876655    589999998764 5888889998 788


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhCC----ccc-------cChHHHHHHHHHHHHHHHHHHHHHHHH-hHH----------
Q 015905          213 IVMTSLSTATAVFVTPLLSLLLIGK----RLP-------VDVKGMVSSILQIVVVPIAAGLLLNRF-FPR----------  270 (398)
Q Consensus       213 l~mt~istlla~~~~Plll~ll~g~----~v~-------vd~~~i~~~Ll~~VllPl~lG~llr~~-~p~----------  270 (398)
                      ..+..+=-++-++.+|+...++.+.    ..+       .|..    .+...+.+=.+.|.+.|+. .|.          
T Consensus       113 a~~q~lRl~~Vv~~vP~i~~~~~~~~~~~~~~~~~~~~~~~~~----~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~  188 (318)
T PF05145_consen  113 ALVQSLRLLLVVLLVPFIASLLGGGNSAASEPGPHAVPLMSWL----WLALLALAALAGGLLARRLRIPAPWLLGPMLVS  188 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhcccccCCcccccCCCCCHH----HHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            8888888888888999999887653    111       2222    3333444445556666654 342          


Q ss_pred             -HHH---HhcCcCChhHHHHHHHHHHHHHHhh--hhhhhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccch
Q 015905          271 -ICN---AIRPFLPPLSVLVTACCVGAPLAIN--IESVMS--PFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKAL  342 (398)
Q Consensus       271 -~a~---~l~~~l~~~s~l~llliv~~~~~~n--~~~i~~--~~~~~i~la~~ll~l~gf~lGylla~~l~~~~~~~~~~  342 (398)
                       ..+   ..+...|..-...-.++++..++..  .+.+.+  ......++..+++...++..+|.+++ +.+.+.    .
T Consensus       189 a~~~~~~~~~~~~P~~l~~~aqv~iG~~iG~~f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~~-~~~~~~----~  263 (318)
T PF05145_consen  189 AILNLFGGPSFSLPPWLVNAAQVLIGASIGSRFTRETLRELRRLLPPALLSTLLLLALCALFAWLLSR-LTGIDF----L  263 (318)
T ss_pred             HHHHHHhCCCCCCCHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCH----H
Confidence             011   1122333333333333344444432  122221  11222344455666778888998886 455443    2


Q ss_pred             hhheeeecccccHHHHHHHHHHhCCCCcchhHHHHHHH----HHHHHHHHHHHHHhhcc
Q 015905          343 QRTLSYETGMQSSLLALALANRFFQDPLVSVPPAISTV----IMSLMGFFLVMLWAKKS  397 (398)
Q Consensus       343 ~~tl~~~tG~rN~~Lal~LA~~~F~~p~valp~~iy~v----~q~i~g~~la~~~~~~~  397 (398)
                      ..-+++.=|--+.   +.+.....+ -+.++.. .+++    .-.+....++.+|.|++
T Consensus       264 t~~La~aPGGl~e---M~l~A~~l~-~d~~~V~-~~q~~Rl~~v~~~~p~~~r~~~r~~  317 (318)
T PF05145_consen  264 TALLATAPGGLAE---MALIALALG-ADVAFVA-AHQVVRLLFVLLLAPFIARWLRRRR  317 (318)
T ss_pred             HHHHHhCCccHHH---HHHHHHHcC-CChHHHH-HHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3333333332221   112222332 2233322 3444    33445566777887776

The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.

>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter

Probab=97.04  E-value=0.0077  Score=59.38  Aligned_cols=255  Identities=14%  Similarity=0.206  Sum_probs=131.1

Q ss_pred             HHHHHHHHhhcCCCCccc------------------------ccCHHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhh
Q 015905          115 VLGSTMLALVFPPSFTWF------------------------TASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTI  170 (398)
Q Consensus       115 il~~~~lg~~~P~~~~~l------------------------~l~~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~  170 (398)
                      +++++.+.-++|+.+..+                        +++.|+-.+.+||-.-+   ++..+++--+++++++  
T Consensus        19 Lllga~inTf~P~~~~~~GgFTtalf~G~~~il~~~l~~~Ga~I~~k~~g~~l~kg~~l---~~~K~~i~~~~g~~~~--   93 (314)
T TIGR00793        19 LFLGALCHTFAPGAGKYFGSFTNGLITGTVPILAVWFFCMGASIDLSATGTVLRKSGTL---VVTKIAVAWVVAAIAS--   93 (314)
T ss_pred             HHHHHHHHhcCCchhhhcCchhHHHHcCcHHHHHHHHHHhCCeeeecccchhhhhccee---eeHHHHHHHHHHHHHH--
Confidence            556667777778775432                        27888888888874432   2346666667777777  


Q ss_pred             hhhccCCCh---hHHHHHHHHhcC------CchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCC--cc
Q 015905          171 SVSVFGLPT---PIGAGIMLVSCV------SGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGK--RL  239 (398)
Q Consensus       171 ~~~~~~l~~---~la~GliL~~~~------Pgg~~Snv~T~la~Gd~aaLsl~mt~istlla~~~~Plll~ll~g~--~v  239 (398)
                        ++++.+.   .+..|+-.++..      =|+.....+.+.-+-++ .-+.+.+      ++---|+...+.+|.  -.
T Consensus        94 --~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~aL~~qyGd~~D-~gA~~i~------sl~~GPf~TMi~LG~sGlA  164 (314)
T TIGR00793        94 --RIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYASIMQQYGTKEE-AGAFVLM------SLESGPLMTMVILGTAGIA  164 (314)
T ss_pred             --HHcCcCCccccceeccHHHHHHHHHhCCcHHHHHHHHHHcCCHhh-hhhhhhh------hhccCcHHHHHHHhhccCC
Confidence              4666554   222233222222      23333333444433322 2333332      223345555555553  35


Q ss_pred             ccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCcCChhHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHH
Q 015905          240 PVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHL  319 (398)
Q Consensus       240 ~vd~~~i~~~Ll~~VllPl~lG~llr~~~p~~a~~l~~~l~~~s~l~llliv~~~~~~n~~~i~~~~~~~i~la~~ll~l  319 (398)
                      ++|+..     +.-.++|+++|+++-..-|++.+.+.+-.+.+--+ +.+-++  -..|-+.+++. +..-++..++..+
T Consensus       165 ~ip~~~-----lv~~ilPlliG~ilGNLD~~~r~fl~~~~~~lIpF-f~FaLG--aginl~~i~~a-Gl~GIlLGl~v~~  235 (314)
T TIGR00793       165 SFEPHV-----FVGAVLPFLVGFALGNLDPELRDFFSKAVQTLIPF-FAFALG--NTIDLGVIIQT-GLLGILLGVSVII  235 (314)
T ss_pred             CCCHHH-----HHHHHHHHHHHHHHhcCCHHHHHHhccCCCeeeeh-hhhhhc--CCCCHHHHHHh-CcchHHHHHHHHH
Confidence            788765     34678999999999999998888877765543211 111110  12333444442 2221222333334


Q ss_pred             HHHHHHHHHHHHhhcCCccccchhhheeeecccccH-HHHHHHHHH--hCCCCcchhH---HHHHHHHHHHHHHHHHHHH
Q 015905          320 SAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSS-LLALALANR--FFQDPLVSVP---PAISTVIMSLMGFFLVMLW  393 (398)
Q Consensus       320 ~gf~lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~-~Lal~LA~~--~F~~p~valp---~~iy~v~q~i~g~~la~~~  393 (398)
                      +.....|+.-|.+.+.+     .....+..+..-|. +.-.++|..  .|. |.+...   ++-..++..+...++..||
T Consensus       236 vtG~~~~~~dr~~~g~~-----g~aG~A~sstAGnAvatPaavA~adPs~~-~~a~~ATaqvAaavivTaiL~Pilta~~  309 (314)
T TIGR00793       236 LTGIPLILADKFIGGGD-----GTAGIAASSSAGAAVATPVLIAEMVPAFK-PVAPAATALVATSVIVTSLLVPIATVWW  309 (314)
T ss_pred             HHhHHHHHHHHHhcCCC-----CchhhHHHHHHHHhhhhHHHHHHhChhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44456666666432322     12233333333333 333334432  221 222111   2335567777888888899


Q ss_pred             hhccC
Q 015905          394 AKKSE  398 (398)
Q Consensus       394 ~~~~~  398 (398)
                      .||-|
T Consensus       310 ~kr~~  314 (314)
T TIGR00793       310 SKKVK  314 (314)
T ss_pred             HHhcC
Confidence            88854

This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.

>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]

Probab=96.87  E-value=0.52  Score=47.70  Aligned_cols=95  Identities=16%  Similarity=0.189  Sum_probs=78.6

Q ss_pred             ccCHHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHH-HHHHhcCCCchhh
Q 015905          133 TASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN-YATFLTDPPLAPL  211 (398)
Q Consensus       133 ~l~~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Sn-v~T~la~Gd~aaL  211 (398)
                      +++.+++....++|-.++..++......-+.+|.+.+    .-.+|...+    ..+++|||.+.- .+.+=-|.|. .+
T Consensus        74 ~~t~s~l~~l~~~w~~~~~v~~~tl~~s~l~g~ll~r----~~~~~~~Ta----~~gs~PGgas~m~~iA~d~gAd~-~~  144 (352)
T COG3180          74 SLTPSVLDTLKSNWPIVLVVLLLTLLSSILLGWLLKR----FSILPGNTA----FLGSSPGGASAMVSIAQDYGADL-RL  144 (352)
T ss_pred             hcCHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHH----hcCCCcchh----hHhcCCchHHHHHHHHHHhCCCh-hH
Confidence            3799999999999998888888888888888998874    335776655    479999999775 5888889998 78


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhC
Q 015905          212 SIVMTSLSTATAVFVTPLLSLLLIG  236 (398)
Q Consensus       212 sl~mt~istlla~~~~Plll~ll~g  236 (398)
                      -..+..+=-+.-..+.|+....+.|
T Consensus       145 VAl~Q~lRvl~Vvl~vplv~~~~~~  169 (352)
T COG3180         145 VALMQYLRVLFVVLLAPLVSRLFVG  169 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            8888888888888889999999885

>PRK05274 2-keto-3-deoxygluconate permease; Provisional

Probab=96.30  E-value=0.25  Score=49.70  Aligned_cols=235  Identities=16%  Similarity=0.257  Sum_probs=113.6

Q ss_pred             cCHHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCCh---hHHHHHHH------HhcCCchhhHHHHHHhc
Q 015905          134 ASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPT---PIGAGIML------VSCVSGAQLSNYATFLT  204 (398)
Q Consensus       134 l~~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~---~la~GliL------~~~~Pgg~~Snv~T~la  204 (398)
                      ++.++-...++|-..++.   ..+.+--++++..+    .+++.+.   +...|+..      +.-+=++.....++...
T Consensus        64 i~~~~~~~~l~~g~~l~~---~k~~~~~~~~~~~~----~~~g~~~i~~gl~~G~s~la~~a~l~~~N~~ly~~~~~~~g  136 (326)
T PRK05274         64 INLRATGTVLKKGGTLLL---TKFAVAALVGVIAG----KFIGEEGIRLGGFAGLSTLAIIAAMDNTNGGLYAALMGQYG  136 (326)
T ss_pred             EeccccchhhhhchhHHH---HHHHHHHHHHHHhh----hcchHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhC
Confidence            788888888877444332   34555545556555    3444322   22222211      12222334444455554


Q ss_pred             CCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCC--ccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCcCChh
Q 015905          205 DPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGK--RLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPL  282 (398)
Q Consensus       205 ~Gd~aaLsl~mt~istlla~~~~Plll~ll~g~--~v~vd~~~i~~~Ll~~VllPl~lG~llr~~~p~~a~~l~~~l~~~  282 (398)
                      +... .-+...+.+..      -|....++++.  ..+++..++..     +++|+++|+.++.+.+++.+...+-.+.+
T Consensus       137 ~~~d-~ga~i~lsl~~------Gp~~tM~lL~aagla~~p~~~li~-----allplliG~~lgnl~~~l~~~~~~Gi~~l  204 (326)
T PRK05274        137 TKED-AGAFVLMSLED------GPFMTMLALGAAGLASFPPPALVG-----AVLPLLVGFILGNLDPELRQFLGKAVPVL  204 (326)
T ss_pred             CCCC-cchHHHHHHhh------hHHHHHHHHHhhCcccCCCchhhH-----HHHHHHHHHHHHhHHHhhHHHhcCCcEEE
Confidence            4322 22333322222      23333333332  23466555422     23999999999998888888887766552


Q ss_pred             HHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhhheeeecccccHH-HHHHH
Q 015905          283 SVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSL-LALAL  361 (398)
Q Consensus       283 s~l~llliv~~~~~~n~~~i~~~~~~~i~la~~ll~l~gf~lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~~-Lal~L  361 (398)
                      --+..+.   .-...|-+.+.. .++.-++..+..++.....+|+..| +++.+    ++....+..++..|.. -+.++
T Consensus       205 Lp~~~~~---lG~~l~lq~i~~-~G~~GilL~~~~~~~t~~~~~~~~R-l~~~~----~g~~g~a~~ttaG~aic~pAAv  275 (326)
T PRK05274        205 IPFFAFA---LGNGIDLGTIIT-AGLSGILLGVAVVAVTGIPLYLADR-LIGGG----NGVAGAAAGSTAGNAVATPAAV  275 (326)
T ss_pred             HHHHHHH---HhcceeHhHHHh-cCCcchhhhhhHhhccchhhHhHhh-eeecC----CCcchHHHHHHHHHHHHHHHHH
Confidence            2111111   111223233332 2333334444555566777888886 55443    2333444555555542 22223


Q ss_pred             HHH--hCC--CCcchhHHHHHHHHHHHHHHHHHHHHhhc
Q 015905          362 ANR--FFQ--DPLVSVPPAISTVIMSLMGFFLVMLWAKK  396 (398)
Q Consensus       362 A~~--~F~--~p~valp~~iy~v~q~i~g~~la~~~~~~  396 (398)
                      +..  .+.  .+.+++-++.-.++..+...++..+|.||
T Consensus       276 aa~~p~~~~~~~~at~~VA~~vivt~il~P~l~~~~~k~  314 (326)
T PRK05274        276 AAADPSFAPFAPAATAQVAAAVIVTAILAPILTAWWSKR  314 (326)
T ss_pred             HhhccccccchHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            322  222  12233333344456666777777777665

>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family

Probab=95.28  E-value=0.26  Score=49.00  Aligned_cols=118  Identities=12%  Similarity=0.238  Sum_probs=67.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHH-HHH--hH-HHHHHhcCcCChhHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHH
Q 015905          244 KGMVSSILQIVVVPIAAGLLL-NRF--FP-RICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHL  319 (398)
Q Consensus       244 ~~i~~~Ll~~VllPl~lG~ll-r~~--~p-~~a~~l~~~l~~~s~l~llliv~~~~~~n~~~i~~~~~~~i~la~~ll~l  319 (398)
                      |.++..++ -+++-+.+|.++ ||.  ++ +..+.+.+..   -.+++=..++..+.....+..+...+...........
T Consensus         4 ~~~~~~il-pv~~ii~lG~~~~~r~~~~~~~~~~~l~~~v---~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~   79 (321)
T TIGR00946         4 YVILETVL-PILVVILLGYILGKRFGILDEEHASGINRFV---INFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFS   79 (321)
T ss_pred             HHHHHHHH-HHHHHHHHHHHHHHHhCcCCHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44555544 677788899999 775  22 3334444432   2222333333333322111011111222333344456


Q ss_pred             HHHHHHHHHHHHhhcCCccccchhhheeeecccccHH-HHHHHHHHhCCC
Q 015905          320 SAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSL-LALALANRFFQD  368 (398)
Q Consensus       320 ~gf~lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~~-Lal~LA~~~F~~  368 (398)
                      ..+.++|.++|++++.++   +++.+..+.++..|.+ +|+.++...||+
T Consensus        80 ~~~~l~~~~~~~~~~~~~---~~~~~~~~~~~~~N~~~~GlPl~~~~~G~  126 (321)
T TIGR00946        80 GSYALIWLITKPLFKADY---GKLSGFLLVSALPNTAFIGYPLLLSLFGE  126 (321)
T ss_pred             HHHHHHHHHHHHHHhccc---chhhHHHHHhhhccceeehHHHHHHHhcc
Confidence            678888888875556554   6778888888999975 899999999984

>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance []

Probab=95.03  E-value=0.94  Score=42.98  Aligned_cols=92  Identities=15%  Similarity=0.083  Sum_probs=75.7

Q ss_pred             HHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHH
Q 015905          136 EKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVM  215 (398)
Q Consensus       136 ~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~aaLsl~m  215 (398)
                      .|+.+...||++.++.++.+--++--...+.++    ..+++|+++...++-=+.  +.+.+--.+...|||. +++.+.
T Consensus        67 Y~~~~~l~~~~~~il~~~~~g~~~~~~~~~~l~----~~lgl~~~~~~Sl~pkSV--TtpiAi~is~~iGG~~-sLta~~  139 (215)
T PF04172_consen   67 YRQRRLLKKNWIPILVGVLVGSLVSIFSAVLLA----RLLGLSPEIILSLAPKSV--TTPIAIEISEQIGGIP-SLTAVF  139 (215)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCcCHHHHHHHHHHHh--hHHHHHHHHHHhCChH-HHHHHH
Confidence            467777788889999998888777777788887    589999999866554433  4555556899999999 899999


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 015905          216 TSLSTATAVFVTPLLSLLL  234 (398)
Q Consensus       216 t~istlla~~~~Plll~ll  234 (398)
                      +.++-+++..+-|.++.++
T Consensus       140 VvitGi~Ga~~g~~llk~~  158 (215)
T PF04172_consen  140 VVITGILGAVLGPPLLKLL  158 (215)
T ss_pred             HHHHhhHHHHhHHHHHhHc
Confidence            9999999999999999886

>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins

Probab=94.95  E-value=3.6  Score=41.49  Aligned_cols=92  Identities=21%  Similarity=0.288  Sum_probs=64.6

Q ss_pred             HHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHH
Q 015905          137 KDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMT  216 (398)
Q Consensus       137 ~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~aaLsl~mt  216 (398)
                      .||.-.+.|||.+++|...|+.+.-  ++..+    ..++.++..|..+-+.|-+=|.++-.+-+.++ -|. --.++..
T Consensus        83 tDFgpllanP~~~llGaaAQ~Gif~--t~~~A----~~lGf~~~eAAsIgIIGgADGPtsIf~s~~LA-p~L-lgpIaVa  154 (360)
T PF03977_consen   83 TDFGPLLANPKTLLLGAAAQFGIFA--TFLGA----ILLGFTPKEAASIGIIGGADGPTSIFVSSKLA-PHL-LGPIAVA  154 (360)
T ss_pred             HhhHHHHhCHHHHHHHHHHHHhHHH--HHHHH----HHhCCCHHHhhHhhhcccCCCcHHHHHHHhhh-HHH-HHHHHHH
Confidence            4999999999999999999999763  34444    35688888888888888776665544445554 344 2344444


Q ss_pred             HHH-HHHHHHHHHHHHHHhhC
Q 015905          217 SLS-TATAVFVTPLLSLLLIG  236 (398)
Q Consensus       217 ~is-tlla~~~~Plll~ll~g  236 (398)
                      +=| .-+.++.-|.++.++..
T Consensus       155 AYsYMaLvPiiqPpimklLtt  175 (360)
T PF03977_consen  155 AYSYMALVPIIQPPIMKLLTT  175 (360)
T ss_pred             HHHHHHHHhhhhhHHHHHhcC
Confidence            444 55677888999988864

The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport

>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit

Probab=94.20  E-value=5.1  Score=40.90  Aligned_cols=92  Identities=17%  Similarity=0.169  Sum_probs=62.6

Q ss_pred             HHHHHHHhchhHHHH-HHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHH
Q 015905          137 KDFIEAFKRPAAIFA-GYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVM  215 (398)
Q Consensus       137 ~dl~~~l~~P~~l~~-gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~aaLsl~m  215 (398)
                      .||.-.+.|||..++ |...|+.+.=-  +..+    ..++.+...|.++-+.|-+=|.++-.+-+.++. |. --+++.
T Consensus       119 tDFgpllanP~~~ll~gaaAQ~GiF~t--~~~A----~~lGF~~~eAAsIgIIGgADGPTaIf~s~kLAp-~L-lg~IaV  190 (399)
T TIGR03136       119 SDISFILARPWASITVALFAEMGTFAT--LVIG----YYCGLTPGEAAAVGTIGGADGPMVLFASLILAK-DL-FVPISI  190 (399)
T ss_pred             hcchHHHhChHHHHHHHHHHHhhHHHH--HHHH----HHcCCCHHHhhHHhhcccCCccHHHHHHHhhhh-Hh-HHHHHH
Confidence            499999999999999 89999987633  3443    356777777777777887766655545555543 33 233444


Q ss_pred             HHHH-HHHHHHHHHHHHHHhhC
Q 015905          216 TSLS-TATAVFVTPLLSLLLIG  236 (398)
Q Consensus       216 t~is-tlla~~~~Plll~ll~g  236 (398)
                      .+=| .-+-|+.-|.++.++..
T Consensus       191 AAYsYMaLVPiiqPpimklLtt  212 (399)
T TIGR03136       191 IAYLYLSLTYAGYPYLIKLLVP  212 (399)
T ss_pred             HHHHHHHHHhcccchHHHhhcC
Confidence            4444 45667777888888864

Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.

>TIGR00659 conserved hypothetical protein TIGR00659

Probab=94.05  E-value=2  Score=41.13  Aligned_cols=92  Identities=15%  Similarity=0.118  Sum_probs=73.1

Q ss_pred             HHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHH
Q 015905          136 EKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVM  215 (398)
Q Consensus       136 ~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~aaLsl~m  215 (398)
                      .++.+...||++.++.+..+--++--..++.++    ..+++++++...++-=+.  +++.+--.+...|||. +++.+.
T Consensus        77 Y~~~~~lk~~~~~Il~~~~~G~~~~~~s~~~la----~~lg~~~~i~~Sl~pkSv--TtpiAm~vs~~iGG~~-sLta~~  149 (226)
T TIGR00659        77 YKQLPQIKKYWKEIILNVAVGSVIAIISGTLLA----LLLGLGPEIIASLLPKSV--TTPIAMHVSEMIGGIP-AVTAVF  149 (226)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCcCHHHHHHhhhHHh--hHHHHHHHHHHhCChH-HHHHHH
Confidence            466667777888888888877676667778887    589999998855443333  4445555899999999 899999


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 015905          216 TSLSTATAVFVTPLLSLLL  234 (398)
Q Consensus       216 t~istlla~~~~Plll~ll  234 (398)
                      +.++-+++..+-|.++.++
T Consensus       150 vvitGi~Ga~~g~~ll~~~  168 (226)
T TIGR00659       150 VILTGLLGTVFGPMVLRYF  168 (226)
T ss_pred             HHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999887

Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.

>PRK04288 antiholin-like protein LrgB; Provisional

Probab=93.94  E-value=2.3  Score=40.83  Aligned_cols=92  Identities=11%  Similarity=0.005  Sum_probs=75.3

Q ss_pred             HHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHH
Q 015905          136 EKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVM  215 (398)
Q Consensus       136 ~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~aaLsl~m  215 (398)
                      .++++...|+++.++.++++--++--..++.++    +.+++|+++...++==+.  +++.+--.+...||+. +++...
T Consensus        83 Y~q~~~lk~~~~~Il~~~~vG~~~~i~s~~~la----~~lgl~~~~~~Sl~pKSV--TtPIAm~is~~iGG~p-sLtA~~  155 (232)
T PRK04288         83 YKKRDVLKKYWWQILGGIVVGSVCSVLIIYLVA----KLIQLDNAVMASMLPQAA--TTAIALPVSAGIGGIK-EITSFA  155 (232)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCcCHHHHHHHhhHhh--hHHHHHHHHHHhCCcH-HHHHHH
Confidence            366777778889999999888887778888888    689999998855543333  4445556899999999 899999


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 015905          216 TSLSTATAVFVTPLLSLLL  234 (398)
Q Consensus       216 t~istlla~~~~Plll~ll  234 (398)
                      +.++-+++.++-|.++.++
T Consensus       156 ViitGi~Gai~g~~llk~~  174 (232)
T PRK04288        156 VIFNAVIIYALGAKFLKLF  174 (232)
T ss_pred             HHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999887

>PRK10711 hypothetical protein; Provisional

Probab=93.91  E-value=1.8  Score=41.46  Aligned_cols=92  Identities=14%  Similarity=-0.002  Sum_probs=74.8

Q ss_pred             HHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHH
Q 015905          136 EKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVM  215 (398)
Q Consensus       136 ~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~aaLsl~m  215 (398)
                      .++.+...|+++.+..++..--++--..++.++    +.+++|+++...++==+.  +++.+--.++..||+. +++...
T Consensus        78 Y~q~~~lk~~~~~I~~~~~vG~~v~i~s~~~l~----~~lg~~~~~~~Sl~pkSV--TtPIAm~is~~iGG~~-sLta~~  150 (231)
T PRK10711         78 YEQLHQIRARWKSIISICFIGSVVAMVTGTAVA----LWMGATPEIAASILPKSV--TTPIAMAVGGSIGGIP-AISAVC  150 (231)
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCcCHHHHHHHhhhhh--hHHHHHHHHHHhCCcH-HHHHHH
Confidence            356666677888899998888787778888888    689999999855543333  4445555899999999 899999


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 015905          216 TSLSTATAVFVTPLLSLLL  234 (398)
Q Consensus       216 t~istlla~~~~Plll~ll  234 (398)
                      +.++-+++.++-|.++.++
T Consensus       151 ViitGi~Ga~~g~~llk~~  169 (231)
T PRK10711        151 VIFVGILGAVFGHTLLNAM  169 (231)
T ss_pred             HHHHHHHHHHHHHHHHHHc
Confidence            9999999999999999887

>PRK09903 putative transporter YfdV; Provisional

Probab=93.71  E-value=1.5  Score=43.59  Aligned_cols=111  Identities=14%  Similarity=0.214  Sum_probs=58.2

Q ss_pred             HHHHHHHHHHHHHHHHH--hH-HHHHHhcCcCChhHHHHHHHHHHHHHHhh-hhhhhhhhhHHHHHHHHHHHHHHHHHHH
Q 015905          251 LQIVVVPIAAGLLLNRF--FP-RICNAIRPFLPPLSVLVTACCVGAPLAIN-IESVMSPFGLTILLLIITFHLSAFVAGY  326 (398)
Q Consensus       251 l~~VllPl~lG~llr~~--~p-~~a~~l~~~l~~~s~l~llliv~~~~~~n-~~~i~~~~~~~i~la~~ll~l~gf~lGy  326 (398)
                      +.-+++=+.+|.+.||.  .+ +..+.+.+..-.   +++=..++..+... .+...+  .+...+...+..+..+.++|
T Consensus         9 ilpif~ii~lG~~~~r~~~~~~~~~~~ls~lv~~---v~lPalif~s~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~   83 (314)
T PRK09903          9 LLPIIVIMLLGYFSGRRETFSEDQARAFNKLVLN---YALPAALFVSITRANREMIFA--DTRLTLVSLVVIVGCFFFSW   83 (314)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH---HHHHHHHHHHHHhCCHHHHHh--hhhHHHHHHHHHHHHHHHHH
Confidence            34555666778888774  22 223333333222   22222222222221 111111  12233444455556667777


Q ss_pred             HHHHHhhcCCccccchhhheeeecccccH-HHHHHHHHHhCCCC
Q 015905          327 VVTGLAFAEAHDVKALQRTLSYETGMQSS-LLALALANRFFQDP  369 (398)
Q Consensus       327 lla~~l~~~~~~~~~~~~tl~~~tG~rN~-~Lal~LA~~~F~~p  369 (398)
                      .+++++++.++   +++....+..+.-|. -+|+.+....||+.
T Consensus        84 ~~~~~~~~~~~---~~~~~~~~~~~~~N~gf~G~Pl~~~~~G~~  124 (314)
T PRK09903         84 FGCYKFFKRTH---AEAAVCALIAGSPTIGFLGFAVLDPIYGDS  124 (314)
T ss_pred             HHHHHHhcCCc---chhhHhhhhhcCCCcccccHHHHHHHcCch
Confidence            77765545443   455566666777787 59999999999843

>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea

Probab=93.56  E-value=1.2  Score=45.02  Aligned_cols=107  Identities=14%  Similarity=0.282  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHH--hH-HHHHHhcCcCChhHHHHHHHHHHHHHHhhh--hhhhhhhhHHHHHHHHHHHHHHHHHHHH
Q 015905          253 IVVVPIAAGLLLNRF--FP-RICNAIRPFLPPLSVLVTACCVGAPLAINI--ESVMSPFGLTILLLIITFHLSAFVAGYV  327 (398)
Q Consensus       253 ~VllPl~lG~llr~~--~p-~~a~~l~~~l~~~s~l~llliv~~~~~~n~--~~i~~~~~~~i~la~~ll~l~gf~lGyl  327 (398)
                      -+++=+++|.+++++  ++ +..+.+.+..   -.+++=++++..++.+.  +.+.+  .+.+.+...+..++++.++|+
T Consensus         8 ~i~~ii~~G~~~~~~~~l~~~~~~~ls~lv---~~~~lP~liF~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~   82 (385)
T PF03547_consen    8 PIFLIILLGYLLGRFGILDPEASKGLSKLV---FNVFLPALIFSSIANTDTLEDLLS--LWFIPVFAFIIFILGLLLGFL   82 (385)
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---HHHHHHHHHHHHHHhccchhhhhh--hHHHHHHHHHHHHHHHHHHHH
Confidence            566667788888876  22 2233333332   22333333333333321  11111  223444556667888888988


Q ss_pred             HHHHhhcCCccccchhhheeeecccccH-HHHHHHHHHhCCC
Q 015905          328 VTGLAFAEAHDVKALQRTLSYETGMQSS-LLALALANRFFQD  368 (398)
Q Consensus       328 la~~l~~~~~~~~~~~~tl~~~tG~rN~-~Lal~LA~~~F~~  368 (398)
                      +.| +++.++   +++......++..|. .+++.+....|++
T Consensus        83 ~~~-~~~~~~---~~~~~~~~~~~~~N~~~lglpi~~~l~g~  120 (385)
T PF03547_consen   83 LSR-LFRLPK---EWRGVFVLAASFGNTGFLGLPILQALFGE  120 (385)
T ss_pred             HHH-hcCCCc---ccceEEEecccCCcchhhHHHHHHHHhcc
Confidence            876 456554   567778888888997 4899999999974

Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane

>COG0679 Predicted permeases [General function prediction only]

Probab=93.44  E-value=1.5  Score=43.60  Aligned_cols=70  Identities=14%  Similarity=0.137  Sum_probs=45.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhhheeeecccccHH-HHHHHHHHhCCCCcchhHHHHHHHHHH
Q 015905          310 ILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSL-LALALANRFFQDPLVSVPPAISTVIMS  383 (398)
Q Consensus       310 i~la~~ll~l~gf~lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~~-Lal~LA~~~F~~p~valp~~iy~v~q~  383 (398)
                      .+.+.+...+..+..+++++|+.++.+.   +++.......+..|++ ++..++...||+..++.+. +|...++
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~N~g~lg~pi~~~~~G~~gl~~~~-i~~~~~~  136 (311)
T COG0679          66 LIVASLVATLLAFFLLALIGRFLFKLDK---RETVIFALASAFPNIGFLGLPVALSLFGEKGLAYAV-IFLIIGL  136 (311)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccch---hhHHHHHHHHHhcccchhhHHHHHHHcCcchHHHHH-HHHHHHH
Confidence            3444555566666777777777655543   4556777888888875 7799999999865555444 3444333

>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication

Probab=93.37  E-value=2  Score=38.48  Aligned_cols=90  Identities=13%  Similarity=0.166  Sum_probs=61.6

Q ss_pred             cCHHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHH-HHHHhcCCCchhhH
Q 015905          134 ASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN-YATFLTDPPLAPLS  212 (398)
Q Consensus       134 l~~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Sn-v~T~la~Gd~aaLs  212 (398)
                      .+.+++++..+.+...+...+...++.=..++.+.    +..+.|..-+    +.+++|||...- .++.-.|.|. ..-
T Consensus        64 f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~~~~l~----~~~~~~~~ta----~La~~PGGl~~m~~~A~~~gad~-~~V  134 (156)
T TIGR03082        64 FTREVLAELKRLWPAALLSTVLLLALSALLAWLLA----RLTGVDPLTA----FLATSPGGASEMAALAAELGADV-AFV  134 (156)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCCCHHHH----HHHhCCchHHHHHHHHHHhCCCH-HHH
Confidence            68889988888877666555555555445555554    5677777555    588999998664 4667778888 566


Q ss_pred             HHHHHHHHHHHHHHHHHHHH
Q 015905          213 IVMTSLSTATAVFVTPLLSL  232 (398)
Q Consensus       213 l~mt~istlla~~~~Plll~  232 (398)
                      .....+=.++-.+..|++..
T Consensus       135 ~~~q~~Rl~~v~~~~P~i~~  154 (156)
T TIGR03082       135 AAMQTLRLLFVVLLVPLLAR  154 (156)
T ss_pred             HHHHHHHHHHHHHHHHHHHh
Confidence            66666666666666676554

The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra

>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins

Probab=92.21  E-value=1.4  Score=43.99  Aligned_cols=108  Identities=18%  Similarity=0.223  Sum_probs=64.6

Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHhcCcCChhH----HHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q 015905          253 IVVVPIAAGLLLNRFFPRICNAIRPFLPPLS----VLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFVAGYVV  328 (398)
Q Consensus       253 ~VllPl~lG~llr~~~p~~a~~l~~~l~~~s----~l~llliv~~~~~~n~~~i~~~~~~~i~la~~ll~l~gf~lGyll  328 (398)
                      ..++.+++|++++.+..+..++.++-.+..+    .+++.+.   -+-.+-.++.+ .++..++..++.....+.++|++
T Consensus        28 ~~~~AillG~~i~n~~~~~~~~~~~Gi~~~~k~~Lr~gIVLl---G~~l~~~~i~~-~G~~~~~~~~~~v~~~~~~~~~l  103 (305)
T PF03601_consen   28 ALLIAILLGMLIGNLFFGLPARFKPGIKFSSKKLLRLGIVLL---GFRLSFSDILA-LGWKGLLIIIIVVILTFLLTYWL  103 (305)
T ss_pred             HHHHHHHHHHHHhhhccCCcHHHHhHHHHHHHHHHHHHHHHH---CccccHHHHHH-hCccHHHHHHHHHHHHHHHHHHH
Confidence            4567888999999733333344444333222    2332221   12223344444 46555566667778888899999


Q ss_pred             HHHhhcCCccccchhhheeeecccccHHHHHHHHHHhCC
Q 015905          329 TGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQ  367 (398)
Q Consensus       329 a~~l~~~~~~~~~~~~tl~~~tG~rN~~Lal~LA~~~F~  367 (398)
                      ++++++.++   +...-++-.++..-.+..++++..-=.
T Consensus       104 g~r~~~l~~---~~~~Lia~GtsICG~SAi~A~a~~i~a  139 (305)
T PF03601_consen  104 GRRLFGLDR---KLAILIAAGTSICGASAIAATAPVIKA  139 (305)
T ss_pred             HHHHhCCCH---HHHHHHHhhcccchHHHHHHHcccccC
Confidence            955788875   566667777777777666666654433

; GO: 0016021 integral to membrane

>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit

Probab=89.27  E-value=19  Score=36.39  Aligned_cols=92  Identities=20%  Similarity=0.276  Sum_probs=55.7

Q ss_pred             HHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCC------ChhHHHHHHHHhcCCchhhHHHHHHhcCCCchh
Q 015905          137 KDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGL------PTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAP  210 (398)
Q Consensus       137 ~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l------~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~aa  210 (398)
                      .||.-.+.||+.++.|...|+.+.--+  ..+    ..++.      +...|..+-+.|-+=|.++-.+-+.++ -|. -
T Consensus        77 tDFgpllanP~~~llGaaAQ~GiF~t~--~~A----~~lGf~~~~~~~~~eAAsIgIIGgADGPt~If~s~~la-p~L-l  148 (354)
T TIGR01109        77 TDFGPLLANPRTLLLGAAAQFGIFATV--FGA----LTLNFFGIISFSLPQAAAIGIIGGADGPTAIYLSGKLA-PEL-L  148 (354)
T ss_pred             hhhHHHHhChHHHHHHHHHHhhHHHHH--HHH----HHhCCCcccccChhhceeeeeeccCCCchhhhhHhhhh-hHH-H
Confidence            499999999999999999999876433  333    23444      445555665666655544333333443 233 2


Q ss_pred             hHHHHHHHH-HHHHHHHHHHHHHHhhC
Q 015905          211 LSIVMTSLS-TATAVFVTPLLSLLLIG  236 (398)
Q Consensus       211 Lsl~mt~is-tlla~~~~Plll~ll~g  236 (398)
                      -+++..+=| .-+-|+.-|.++.++..
T Consensus       149 g~IaVAAYsYMaLvPiiqPpimklLtt  175 (354)
T TIGR01109       149 AAIAVAAYSYMALVPIIQPPIMKALTS  175 (354)
T ss_pred             HHHHHHHHHHHHHHhcccchHHHhhcC
Confidence            333333333 44566677888887753

This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.

>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]

Probab=89.19  E-value=4.9  Score=38.44  Aligned_cols=89  Identities=22%  Similarity=0.184  Sum_probs=72.9

Q ss_pred             HHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhH---HHHHHhcCCCchhhH
Q 015905          136 EKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLS---NYATFLTDPPLAPLS  212 (398)
Q Consensus       136 ~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~S---nv~T~la~Gd~aaLs  212 (398)
                      .|++....|+|+.++.+.++--++-=..+++++    +++++++++.     .+..|=....   --.++-.||-. +++
T Consensus        80 Ykq~~~ik~~w~~I~~g~~vGs~~ai~s~~lla----k~~g~~~~~~-----~Sl~PkSvTTpiAm~vs~~iGGip-~lt  149 (230)
T COG1346          80 YKQRHLIKRHWKPILAGVLVGSVVAIISGVLLA----KLFGLSPELI-----LSLLPKSVTTPIAMEVSESIGGIP-ALT  149 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHhCCCHHHH-----HHhcccccccHHHHHHHHhcCCch-HHH
Confidence            467777888899999998887776667778887    6899999988     4555644444   44799999999 899


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Q 015905          213 IVMTSLSTATAVFVTPLLSLLL  234 (398)
Q Consensus       213 l~mt~istlla~~~~Plll~ll  234 (398)
                      ...+.++-+++-++-|.++..+
T Consensus       150 av~Vi~tGi~Gavlg~~llk~~  171 (230)
T COG1346         150 AVFVILTGILGAVLGPLLLKLL  171 (230)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999999999999999887

>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional

Probab=88.47  E-value=26  Score=35.96  Aligned_cols=98  Identities=18%  Similarity=0.221  Sum_probs=58.3

Q ss_pred             HHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHH
Q 015905          137 KDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMT  216 (398)
Q Consensus       137 ~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~aaLsl~mt  216 (398)
                      .||.-.+.|||.++.|...|+.+.--+...+..-.+-..+.+...|..+-++|-+=|.++-.+-+.++ -|. --+++..
T Consensus       148 tDFgpLlanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvsskLA-P~L-lg~IaVA  225 (433)
T PRK15475        148 TDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSGKLA-PEL-LGAIAVA  225 (433)
T ss_pred             hcchHHhhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHhhhh-hHh-HHHHHHH
Confidence            49999999999999999999987644333321000001255666666666666665554444444444 333 2333443


Q ss_pred             HHH-HHHHHHHHHHHHHHhhC
Q 015905          217 SLS-TATAVFVTPLLSLLLIG  236 (398)
Q Consensus       217 ~is-tlla~~~~Plll~ll~g  236 (398)
                      .=| .-+-|+.-|.++.++..
T Consensus       226 AYSYMaLVPiIQPpimklLTT  246 (433)
T PRK15475        226 AYSYMALVPLIQPPIMKALTT  246 (433)
T ss_pred             HHHHHHHHhcccchHHHhccC
Confidence            333 45667777888888753

>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase

Probab=88.47  E-value=8.5  Score=38.53  Aligned_cols=93  Identities=6%  Similarity=0.126  Sum_probs=64.1

Q ss_pred             cCHHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHH-HHHHhcCCCchhhH
Q 015905          134 ASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSN-YATFLTDPPLAPLS  212 (398)
Q Consensus       134 l~~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Sn-v~T~la~Gd~aaLs  212 (398)
                      .+.+++++..|.-...+...+.-....=+.++++.    ...++|...    .+++++|||...- ....-.|.|. +.-
T Consensus       221 f~~~~l~~~~~~~~~~l~~~~~~l~~~~~~a~~l~----~~~~~~~~t----~~La~aPGGl~eM~l~A~~l~~d~-~~V  291 (318)
T PF05145_consen  221 FTRETLRELRRLLPPALLSTLLLLALCALFAWLLS----RLTGIDFLT----ALLATAPGGLAEMALIALALGADV-AFV  291 (318)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHCCCHHH----HHHHhCCccHHHHHHHHHHcCCCh-HHH
Confidence            78888887776655555555555555556666665    566777644    4689999998774 5777788888 677


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhh
Q 015905          213 IVMTSLSTATAVFVTPLLSLLLI  235 (398)
Q Consensus       213 l~mt~istlla~~~~Plll~ll~  235 (398)
                      .++-.+=-+.-.++.|++..++.
T Consensus       292 ~~~q~~Rl~~v~~~~p~~~r~~~  314 (318)
T PF05145_consen  292 AAHQVVRLLFVLLLAPFIARWLR  314 (318)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Confidence            77777766666777777766653

The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.

>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional

Probab=88.45  E-value=27  Score=35.94  Aligned_cols=98  Identities=18%  Similarity=0.221  Sum_probs=58.2

Q ss_pred             HHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHH
Q 015905          137 KDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMT  216 (398)
Q Consensus       137 ~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~aaLsl~mt  216 (398)
                      .||.-.+.|||.++.|...|+.+.--+...+..-.+-..+.+...|..+-++|-+=|.++-.+-+.++ -|. --+++..
T Consensus       148 tDFgpLlanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvsskLA-P~L-lg~IaVA  225 (433)
T PRK15477        148 TDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSGKLA-PEL-LGAIAVA  225 (433)
T ss_pred             hcchHHhhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHhhhh-hHh-HHHHHHH
Confidence            49999999999999999999987644333321000001255666666666666665554444444444 333 2333333


Q ss_pred             HHH-HHHHHHHHHHHHHHhhC
Q 015905          217 SLS-TATAVFVTPLLSLLLIG  236 (398)
Q Consensus       217 ~is-tlla~~~~Plll~ll~g  236 (398)
                      .=| .-+-|+.-|.++.++..
T Consensus       226 AYSYMaLVPiIQPpimklLTT  246 (433)
T PRK15477        226 AYSYMALVPLIQPPIMKALTT  246 (433)
T ss_pred             HHHHHHHHhcccchHHHhccC
Confidence            333 45667777888888753

>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional

Probab=88.43  E-value=27  Score=35.93  Aligned_cols=98  Identities=18%  Similarity=0.221  Sum_probs=58.2

Q ss_pred             HHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHH
Q 015905          137 KDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMT  216 (398)
Q Consensus       137 ~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~aaLsl~mt  216 (398)
                      .||.-.+.|||.++.|...|+.+.--+...+..-.+-..+.+...|..+-++|-+=|.++-.+-+.++ -|. --+++..
T Consensus       148 tDFgpLlanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIfvsskLA-P~L-lg~IaVA  225 (433)
T PRK15476        148 TDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIYLSGKLA-PEL-LGAIAVA  225 (433)
T ss_pred             hcchHHhhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHHhHhhhh-hHh-HHHHHHH
Confidence            49999999999999999999987644333321000001255666666666666665554444444444 333 2333333


Q ss_pred             HHH-HHHHHHHHHHHHHHhhC
Q 015905          217 SLS-TATAVFVTPLLSLLLIG  236 (398)
Q Consensus       217 ~is-tlla~~~~Plll~ll~g  236 (398)
                      .=| .-+-|+.-|.++.++..
T Consensus       226 AYSYMaLVPiIQPpimklLTT  246 (433)
T PRK15476        226 AYSYMALVPLIQPPIMKALTT  246 (433)
T ss_pred             HHHHHHHHhcccchHHHhccC
Confidence            333 45667777888888753

>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters

Probab=85.15  E-value=16  Score=33.38  Aligned_cols=55  Identities=25%  Similarity=0.233  Sum_probs=38.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhhheeeecccccHHHHHHHHHHh
Q 015905          306 FGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRF  365 (398)
Q Consensus       306 ~~~~i~la~~ll~l~gf~lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~~Lal~LA~~~  365 (398)
                      .++...+..++.+..+..+++.++|++++.++     ..+...-+|.++..-++.-|...
T Consensus        82 ~G~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~-----~~~~G~~aGa~T~tp~L~~A~~~  136 (169)
T PF06826_consen   82 GGLKLLLLGVIITLVPLLIALVIGRYLFKLNP-----GIAAGILAGALTSTPALAAAQEA  136 (169)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-----HHHHHHHHccccCcHHHHHHHHh
Confidence            36777788888899999999999986777653     34445556666655555555554

Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.

>COG2855 Predicted membrane protein [Function unknown]

Probab=83.97  E-value=52  Score=33.36  Aligned_cols=92  Identities=16%  Similarity=0.203  Sum_probs=61.6

Q ss_pred             cCHHHHHHHHhchhHHHHHHHHHHhHHHHHHHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHH----HHHhcCCCch
Q 015905          134 ASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNY----ATFLTDPPLA  209 (398)
Q Consensus       134 l~~~dl~~~l~~P~~l~~gl~~qfvimPlla~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv----~T~la~Gd~a  209 (398)
                      ++..|+.+.=-+--.+..   ......=++++.++    +.+++|...+ -++-+|++=||.++..    .+.--+-|+ 
T Consensus        83 ltl~~i~~~G~~~v~~~~---~~l~~t~~~~~~lg----~~lgld~~~a-~Lia~GssICGasAiaA~~pvika~~~ev-  153 (334)
T COG2855          83 LTLSDIADVGGSGVLIIA---ITLSSTFLFAYFLG----KLLGLDKKLA-LLIAAGSSICGASAIAATAPVIKAEEEEV-  153 (334)
T ss_pred             eeHHHHHHcCccHHHHHH---HHHHHHHHHHHHHH----HHhCCCHHHH-HHHHccchhhHHHHHHHhCCcCCCCcccc-
Confidence            788888776544332222   22222335567777    5889999877 5666777777765543    233345566 


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHh
Q 015905          210 PLSIVMTSLSTATAVFVTPLLSLLL  234 (398)
Q Consensus       210 aLsl~mt~istlla~~~~Plll~ll  234 (398)
                      +.++..+.+-..++.+..|.+-.++
T Consensus       154 a~aIa~V~lfgtia~llyP~l~~~l  178 (334)
T COG2855         154 AVAIAVVVLFGTLAMLLYPLLYPLL  178 (334)
T ss_pred             ceehhhHHHHHHHHHHHHHHHHHHh
Confidence            7899999998999999999988875

>PRK05326 potassium/proton antiporter; Reviewed

Probab=82.44  E-value=76  Score=34.16  Aligned_cols=58  Identities=26%  Similarity=0.274  Sum_probs=28.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhCCccccChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHh
Q 015905          217 SLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGLLLNRFFPRICNAI  275 (398)
Q Consensus       217 ~istlla~~~~Plll~ll~g~~v~vd~~~i~~~Ll~~VllPl~lG~llr~~~p~~a~~l  275 (398)
                      .++..++.+++=+.+.+..+..-+.+. ..+..++..+.+-+++|....+......++.
T Consensus       159 ~~nD~~ai~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~  216 (562)
T PRK05326        159 GSNDPMAVFLTITLIELITGGETGLSW-GFLLLFLQQFGLGALIGLLGGWLLVQLLNRI  216 (562)
T ss_pred             hcccHHHHHHHHHHHHHHhCCCCcchH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            344556655554444444333322222 2233444555666666666666655555544

>PRK04972 putative transporter; Provisional

Probab=81.91  E-value=7.9  Score=41.86  Aligned_cols=83  Identities=17%  Similarity=0.324  Sum_probs=46.7

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccchhhheeeecccccHHHHHHHHHHhCCC--CcchhHH--HHHHHH
Q 015905          306 FGLTILLLIITFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQD--PLVSVPP--AISTVI  381 (398)
Q Consensus       306 ~~~~i~la~~ll~l~gf~lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~~Lal~LA~~~F~~--p~valp~--~iy~v~  381 (398)
                      .++.+.++.++..++.-.++++++|++++.++    . +++..-+|.+...-++.-+...-++  |.+.-+.  .+..++
T Consensus       471 ~g~~~~~~g~~~t~~~~~~~~~~~~~~~k~~~----~-~~~G~~aG~~t~~~~l~~~~~~~~~~~~~~gYa~~yp~~~il  545 (558)
T PRK04972        471 VGGQMLIAGLIVSLVPVVICFLFGAYVLRMNR----A-LLFGAIMGARTCAPAMEIISDTARSNIPALGYAGTYAIANVL  545 (558)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH----H-HHHHHHhCCCCCcHHHHHHHhhcCCCCcccccHhHHHHHHHH
Confidence            36666666667777777788888877888764    3 4455555555555444444443343  4332222  233345


Q ss_pred             HHHHHHHHHHHH
Q 015905          382 MSLMGFFLVMLW  393 (398)
Q Consensus       382 q~i~g~~la~~~  393 (398)
                      ..+.+.+++.+|
T Consensus       546 ~~l~~~~iv~~~  557 (558)
T PRK04972        546 LTLAGTLIVIVW  557 (558)
T ss_pred             HHHHHHHHHHhc
Confidence            555666555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	398
3zuy_A	323	Crystal Structure Of A Bacterial Homologue Of The B		6e-19
3zux_A	332	Crystal Structure Of A Bacterial Homologue Of The B		9e-19

>pdb|3ZUY|A Chain A, Crystal Structure Of A Bacterial Homologue Of The Bile Acid Sodium Symporter Asbt Length = 323

Iteration: 1
 Score = 92.0 bits (227), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 109/228 (47%), Gaps = 18/228 (7%)
Query: 132 FTASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCV 191
            T    DF   FK P  +  G + QF + P   ++   +      LP  I  G++LV C 
Sbjct: 53  LTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWLLSKL----LNLPAEIAVGVILVGCC 108
Query: 192 SGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSIL 251
            G   SN  T+L    +A LS+ +TS+ST  +  +TP + L+L G+ L +   GM+ SI+
Sbjct: 109 PGGTASNVMTYLARGNVA-LSVAVTSVSTLISPLLTPAIFLMLAGEMLEIQAAGMLMSIV 167
Query: 252 QIVVVPIAAGLLLNRFFPRICNAIRPFLPPLS----VLVTACCVGAPLAINIESVMSPFG 307
           ++V++PI  GL++++        +   LP +S    VL+    VGA     +ES +  F 
Sbjct: 168 KMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFA 227
Query: 308 XXXXXXXXXFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSS 355
                    + L  F A +  TGL +         Q+TL+ E GMQ+S
Sbjct: 228 VVVLHNGIGYLLGFFAAKW--TGLPYDA-------QKTLTIEVGMQNS 266

>pdb|3ZUX|A Chain A, Crystal Structure Of A Bacterial Homologue Of The Bile Acid Sodium Symporter Asbt Length = 332

Iteration: 1
 Score = 91.3 bits (225), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 108/228 (47%), Gaps = 18/228 (7%)
Query: 132 FTASEKDFIEAFKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCV 191
            T    DF   FK P  +  G + QF + P   +    +      LP  I  G++LV C 
Sbjct: 58  LTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKL----LNLPAEIAVGVILVGCC 113
Query: 192 SGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSIL 251
            G   SN  T+L    +A LS+ +TS+ST T+  +TP + L+L G+ L +   GM+ SI+
Sbjct: 114 PGGTASNVMTYLARGNVA-LSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIV 172
Query: 252 QIVVVPIAAGLLLNRFFPRICNAIRPFLPPLS----VLVTACCVGAPLAINIESVMSPFG 307
           ++V++PI  GL++++        +   LP +S    VL+    VGA     +ES +  F 
Sbjct: 173 KMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFA 232
Query: 308 XXXXXXXXXFHLSAFVAGYVVTGLAFAEAHDVKALQRTLSYETGMQSS 355
                    + L  F A +  TGL +         Q+ L+ E GMQ+S
Sbjct: 233 VVVLHNGIGYLLGFFAAKW--TGLPYDA-------QKALTIEVGMQNS 271

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	398
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	4e-74
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-07

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A* Length = 332

 Score =  233 bits (596), Expect = 4e-74
 Identities = 85/317 (26%), Positives = 137/317 (43%), Gaps = 28/317 (8%)

Query: 100 LVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTA-----------------SEKDFIEA 142
           L  I                  A   P +F W                       DF   
Sbjct: 9   LSKISSFIGKTFSLWAALFAAAAFFAPDTFKWAGPYIPWLLGIIMFGMGLTLKPSDFDIL 68

Query: 143 FKRPAAIFAGYVGQFVVKPILGYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATF 202
           FK P  +  G + QF + P   +        +  LP  I  G++LV C  G   SN  T+
Sbjct: 69  FKHPKVVIIGVIAQFAIMPATAWCL----SKLLNLPAEIAVGVILVGCCPGGTASNVMTY 124

Query: 203 LTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDVKGMVSSILQIVVVPIAAGL 262
           L    +A LS+ +TS+ST T+  +TP + L+L G+ L +   GM+ SI+++V++PI  GL
Sbjct: 125 LARGNVA-LSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGL 183

Query: 263 LLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAF 322
           ++++        +   LP +SV      +GA +  +   +M   GL I  +++  +   +
Sbjct: 184 IVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIME-SGLLIFAVVVLHNGIGY 242

Query: 323 VAGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFF-QDPLVSVPPAISTVI 381
           + G+                Q+ L+ E GMQ+S LA ALA   F   P+V+VP A+ +V 
Sbjct: 243 LLGFFAAKWTGLPYDA----QKALTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVW 298

Query: 382 MSLMGFFLVMLWAKKSE 398
            ++ G  L   WA K+ 
Sbjct: 299 HNISGSLLATYWAAKAG 315

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.2 bits (119), Expect = 8e-07
 Identities = 58/432 (13%), Positives = 118/432 (27%), Gaps = 108/432 (25%)

Query: 38  LSFSTSWCPVHFRSISHSNL-KFGSSRNFVTNSVSENISGPFDQDPDRNYVTESNQVLNQ 96
           + F T      ++ I       F    NF    V +          + +++  S   ++ 
Sbjct: 7   MDFETGEHQYQYKDILSVFEDAF--VDNFDCKDVQDMPKSIL-SKEEIDHIIMSKDAVSG 63

Query: 97  EFSLVNILKQSNSFLPHVVLGSTMLALVFPPSFTWFTASEKDFIEAFKRPAAIFAGYVGQ 156
              L   L      +    +       V   ++ +  +         ++P+ +   Y+ Q
Sbjct: 64  TLRLFWTLLSKQEEMVQKFVEE-----VLRINYKFLMSP---IKTEQRQPSMMTRMYIEQ 115

Query: 157 --------------FV--VKPIL------------GYIFGTISVSVFGLPTPIGAGIMLV 188
                          V  ++P L              +       + G+    G+G    
Sbjct: 116 RDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVL------IDGVL---GSG---K 163

Query: 189 SCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLL-IGKRLPVDVKGMV 247
           + V+     +Y             + + + ++   V +  L  LL  I            
Sbjct: 164 TWVALDVCLSYK-VQCKMDFKIFWLNLKNCNSPETV-LEMLQKLLYQIDPNWTSRSDHSS 221

Query: 248 SSILQIVVVPIA-AGLLLNRFFPR-------ICNA--IRPFLPPLSVLVT------ACCV 291
           +  L+I  +      LL ++ +         + NA     F     +L+T         +
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFL 281

Query: 292 GAPLAINIESVMSPFGLT------ILLLII---TFHLSAFVAG---YVVTGLAFAEAHDV 339
            A    +I        LT      +LL  +      L   V       ++ +A     D 
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIA-ESIRDG 340

Query: 340 KA-LQRTLSY-----ETGMQSSLLAL--ALANRFFQD----PL-VSVPPAISTVIMSLMG 386
            A              T ++SSL  L  A   + F      P    +P  +         
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL--------- 391

Query: 387 FFLVMLWAKKSE 398
             L ++W    +
Sbjct: 392 --LSLIWFDVIK 401

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	398
3zux_A	332	Transporter, ASBTNM; transport protein, membrane p	100.0

>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*

Probab=100.00  E-value=8.8e-49  Score=389.05  Aligned_cols=287  Identities=29%  Similarity=0.485  Sum_probs=267.4

Q ss_pred             HHHHHHHHhHHHHHHHHHHHHHhhcCCCCcccc-----------------cCHHHHHHHHhchhHHHHHHHHHHhHHHHH
Q 015905          101 VNILKQSNSFLPHVVLGSTMLALVFPPSFTWFT-----------------ASEKDFIEAFKRPAAIFAGYVGQFVVKPIL  163 (398)
Q Consensus       101 ~~~l~~~~~~l~~~il~~~~lg~~~P~~~~~l~-----------------l~~~dl~~~l~~P~~l~~gl~~qfvimPll  163 (398)
                      .++.+++++++++++++++++|+.+|+.+.+++                 ++.+|+++.++|||.+..++++||+++|++
T Consensus        10 ~~~~~~l~~~~~l~i~~~~~lg~~~P~~~~~~~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll   89 (332)
T 3zux_A           10 SKISSFIGKTFSLWAALFAAAAFFAPDTFKWAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPAT   89 (332)
T ss_dssp             HHHHHHHHHTHHHHHHHHHHHHHHCGGGTGGGGGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHH
Confidence            345777889999999999999999999887753                 899999999999999999999999999999


Q ss_pred             HHHHHhhhhhccCCChhHHHHHHHHhcCCchhhHHHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHHhhCCccccCh
Q 015905          164 GYIFGTISVSVFGLPTPIGAGIMLVSCVSGAQLSNYATFLTDPPLAPLSIVMTSLSTATAVFVTPLLSLLLIGKRLPVDV  243 (398)
Q Consensus       164 a~~l~~~~~~~~~l~~~la~GliL~~~~Pgg~~Snv~T~la~Gd~aaLsl~mt~istlla~~~~Plll~ll~g~~v~vd~  243 (398)
                      +|+++    ..++++++++.|+++++||||+++||+||+++|||. ++++++|.+||+++++++|+++.++.|+++++|+
T Consensus        90 ~~~l~----~~~~l~~~~~~Glil~~~~P~~~~s~v~t~~a~Gd~-~la~~~~~~stll~~~~~Pl~~~l~~g~~~~v~~  164 (332)
T 3zux_A           90 AWCLS----KLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNV-ALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQA  164 (332)
T ss_dssp             HHHHH----HHTTCCHHHHHHHHHHHHSCCCTHHHHHHHHTTCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHHH----HHhCCChHHHHHHHHHhcCCchhHHHHHHHHhCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCH
Confidence            99998    468999999999999999999999999999999999 8999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcCcCChhHHHHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHHHHHHH
Q 015905          244 KGMVSSILQIVVVPIAAGLLLNRFFPRICNAIRPFLPPLSVLVTACCVGAPLAINIESVMSPFGLTILLLIITFHLSAFV  323 (398)
Q Consensus       244 ~~i~~~Ll~~VllPl~lG~llr~~~p~~a~~l~~~l~~~s~l~llliv~~~~~~n~~~i~~~~~~~i~la~~ll~l~gf~  323 (398)
                      ++++++++.++++|+++|+++|++.|++++++++.++.++.++++++++..++.+.+.+.+. ...++.++++++.++|.
T Consensus       165 ~~~~~~l~~~vllP~~lG~l~r~~~~~~~~~~~~~l~~~s~~~illiv~~~~~~~~~~~~~~-~~~v~~~~~l~~~~~~~  243 (332)
T 3zux_A          165 AGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMES-GLLIFAVVVLHNGIGYL  243 (332)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHGGGGHHHHTTHHHHHHHHHHHHHHHHHHHTHHHHHHH-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHhhhHHHHhc-cHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999998888887777654 45667778899999999


Q ss_pred             HHHHHHHHhhcCCccccchhhheeeecccccHHHHHHHHHHhCC-CCcchhHHHHHHHHHHHHHHHHHHHHhhcc
Q 015905          324 AGYVVTGLAFAEAHDVKALQRTLSYETGMQSSLLALALANRFFQ-DPLVSVPPAISTVIMSLMGFFLVMLWAKKS  397 (398)
Q Consensus       324 lGylla~~l~~~~~~~~~~~~tl~~~tG~rN~~Lal~LA~~~F~-~p~valp~~iy~v~q~i~g~~la~~~~~~~  397 (398)
                      +||+++| +++.++   +|++|+++|+|+||+++|+++|..+|+ +|++++|+++|+++|++.|++++.+|+||+
T Consensus       244 lg~~~~r-~~~~~~---~~~~ti~~e~G~qNs~lai~lA~~~F~~~p~~alp~~iy~~~q~i~~~~la~~~~~~~  314 (332)
T 3zux_A          244 LGFFAAK-WTGLPY---DAQKALTIEVGMQNSGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAAKA  314 (332)
T ss_dssp             HHHHHHH-HTTCCH---HHHHHHHHHHHCCCHHHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHH-HhCCCH---hHhhhhhhhhhhccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            9999998 468776   899999999999999999999999997 689999999999999999999999999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00