Citrus Sinensis ID: 015932

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
MASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQASKARERISKGRSLADNRVVCE
cccccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHEEEccccccccccccHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccccccccc
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHEHEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccHHHHcHHHccccHHHHHHHEEHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHcccccccccccc
MASALETLCGQaygaqqyqrigTQTYTAIFCLFLVCFPLSFLWIYAGKLLVligqdpqishEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIpicwslvyksglgnlGGALAIGISNWLNVTFLAIYMKFSTacaesrvpiSMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSgllpnpqleTSVLSVCLNTIQTLYAIPYGLGAAVSTRVSnelgagnvqKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQASKARERISkgrsladnrvvce
MASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQASKareriskgrsladnrvvce
MASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSglgnlggalaigiSNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQASKARERISKGRSLADNRVVCE
******TLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWE************************
MASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQASK*******************
MASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWE*************RSLADNRVVCE
**SALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQASKARERISKGR**********
iiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiii
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MASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGLGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQASKARERISKGRSLADNRVVCE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query398 2.2.26 [Sep-21-2011]
Q9SIA1477 MATE efflux family protei no no 0.977 0.815 0.520 1e-113
Q8RWF5483 MATE efflux family protei no no 0.964 0.795 0.515 1e-113
Q8GXM8476 MATE efflux family protei no no 0.962 0.804 0.511 1e-111
Q9SIA4476 MATE efflux family protei no no 0.982 0.821 0.498 1e-110
Q9SIA5476 MATE efflux family protei no no 0.962 0.804 0.496 1e-106
Q9SIA3476 MATE efflux family protei no no 0.982 0.821 0.487 1e-106
Q9LUH3469 MATE efflux family protei no no 0.942 0.799 0.370 4e-72
Q9LUH2477 MATE efflux family protei no no 0.942 0.786 0.370 1e-71
Q9LYT3507 Protein TRANSPARENT TESTA no no 0.957 0.751 0.359 2e-63
Q10085455 Uncharacterized transport yes no 0.954 0.835 0.308 3e-45
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function desciption
 Score =  408 bits (1048), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 203/390 (52%), Positives = 265/390 (67%), Gaps = 1/390 (0%)

Query: 1   MASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQIS 60
           +  ALETLCGQAYGA+QY +IGT T++AI     +   +S LW Y  KL V +GQDP IS
Sbjct: 88  LVGALETLCGQAYGAKQYTKIGTYTFSAIVSNVPIVVLISILWFYMDKLFVSLGQDPDIS 147

Query: 61  HEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGL 120
              G + + L+PAL A A  QPL R+ Q+Q L++P+   +   L  HIP+C  LVY  GL
Sbjct: 148 KVAGSYAVCLIPALLAQAVQQPLTRFLQTQGLVLPLLYCAITTLLFHIPVCLILVYAFGL 207

Query: 121 GNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMIC 180
           G+ G ALAIG+S W NV  LA+Y++FS+AC ++R  +S +    + +FF + IPSA M  
Sbjct: 208 GSNGAALAIGLSYWFNVLILALYVRFSSACEKTRGFVSDDFVLSVKQFFQYGIPSAAMTT 267

Query: 181 LEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNV 240
           +EW  FELLIL SGLLPNP+LETSVLS+CL T      IP G+GAA STR+SNELGAGN 
Sbjct: 268 IEWSLFELLILSSGLLPNPKLETSVLSICLTTSSLHCVIPMGIGAAGSTRISNELGAGNP 327

Query: 241 QKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMD 300
           + AR+AV+A IF+   E  + S  LF  + +FGY FSN K+VVDYVT ++ L+CLS ++D
Sbjct: 328 EVARLAVFAGIFLWFLEATICSTLLFTCKNIFGYAFSNSKEVVDYVTELSSLLCLSFMVD 387

Query: 301 SLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQ 360
               V  GVARG GWQNI A+ N+ A+YL G P    LGFW    G+GLWIG+  G+  Q
Sbjct: 388 GFSSVLDGVARGSGWQNIGAWANVVAYYLLGAPVGFFLGFWGHMNGKGLWIGVIVGSTAQ 447

Query: 361 TLLLGIITTCTNWEKQASKARERISKGRSL 390
            ++L I+T C +WE+QA+KARERI  GR+L
Sbjct: 448 GIILAIVTACLSWEEQAAKARERI-VGRTL 476

Arabidopsis thaliana (taxid: 3702)
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function description
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1 Back     alignment and function description
>sp|Q10085|YAO6_SCHPO Uncharacterized transporter C11D3.06 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC11D3.06 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query398
224108371482 predicted protein [Populus trichocarpa] 0.979 0.809 0.755 1e-179
297737740443 unnamed protein product [Vitis vinifera] 0.994 0.893 0.762 1e-177
225424132481 PREDICTED: MATE efflux family protein 5 0.994 0.823 0.762 1e-176
147787625481 hypothetical protein VITISV_022104 [Viti 0.994 0.823 0.760 1e-176
255582915476 TRANSPARENT TESTA 12 protein, putative [ 0.944 0.789 0.752 1e-164
357444623495 Protein TRANSPARENT TESTA [Medicago trun 0.994 0.8 0.689 1e-163
255582921490 TRANSPARENT TESTA 12 protein, putative [ 0.987 0.802 0.704 1e-163
224108375486 predicted protein [Populus trichocarpa] 0.974 0.798 0.695 1e-162
297737742444 unnamed protein product [Vitis vinifera] 0.994 0.891 0.707 1e-162
359472648481 PREDICTED: MATE efflux family protein 5 0.994 0.823 0.707 1e-162
>gi|224108371|ref|XP_002314825.1| predicted protein [Populus trichocarpa] gi|222863865|gb|EEF00996.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  634 bits (1635), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 297/393 (75%), Positives = 345/393 (87%), Gaps = 3/393 (0%)

Query: 1   MASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQIS 60
           MASALETLCGQAYGA+QY+++GTQTYTAIFCL LVC PLS +WIY GK+L   GQDP IS
Sbjct: 90  MASALETLCGQAYGAKQYKKLGTQTYTAIFCLNLVCIPLSVIWIYMGKILHFTGQDPAIS 149

Query: 61  HEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGL 120
           HE GKF++WL+PALFAYAT+QPL+RYFQ+QS I+PM +SSCA LC HIP+CW+LVYKSGL
Sbjct: 150 HEAGKFIVWLVPALFAYATLQPLVRYFQTQSFIMPMLISSCATLCFHIPLCWALVYKSGL 209

Query: 121 GNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMIC 180
            N+G A+A+GIS WLNV FL +Y+K+S+ACA++RVPI  ELF G+GEFF FAIPSAVMIC
Sbjct: 210 KNVGSAVAMGISYWLNVIFLGLYIKYSSACAKTRVPIYKELFYGVGEFFRFAIPSAVMIC 269

Query: 181 LEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNV 240
           LEWWSFELLIL+SG LPNPQLETSVLSVCL TI TLY IP+GLGAA STRV+NELGAGN 
Sbjct: 270 LEWWSFELLILLSGFLPNPQLETSVLSVCLMTISTLYGIPFGLGAAASTRVANELGAGNP 329

Query: 241 QKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMD 300
           + AR+AVYA +F+AV+ETI+V++ LFASRRVFGY+FSNEK+V+DYVTTMAPLVCLSVIMD
Sbjct: 330 RAARLAVYAAMFLAVSETIIVTSALFASRRVFGYLFSNEKEVIDYVTTMAPLVCLSVIMD 389

Query: 301 SLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQ 360
           SLQGV SGVARGCGWQ+I A++NLGAFYLCGIP AA+L FWL   G GLWIGIQ GAFTQ
Sbjct: 390 SLQGVLSGVARGCGWQHIGAYINLGAFYLCGIPAAALLAFWLNLGGMGLWIGIQTGAFTQ 449

Query: 361 TLLLGIITTCTNWEKQASKARERISKGRSLADN 393
           T+LL I+T+CTNWEKQA  ARERI +G    DN
Sbjct: 450 TILLSIVTSCTNWEKQARMARERIFEGH---DN 479

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297737740|emb|CBI26941.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225424132|ref|XP_002280212.1| PREDICTED: MATE efflux family protein 5 [Vitis vinifera] Back     alignment and taxonomy information
>gi|147787625|emb|CAN78227.1| hypothetical protein VITISV_022104 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255582915|ref|XP_002532229.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223528086|gb|EEF30160.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357444623|ref|XP_003592589.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|355481637|gb|AES62840.1| Protein TRANSPARENT TESTA [Medicago truncatula] gi|388490870|gb|AFK33501.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|255582921|ref|XP_002532232.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] gi|223528089|gb|EEF30163.1| TRANSPARENT TESTA 12 protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224108375|ref|XP_002314826.1| predicted protein [Populus trichocarpa] gi|222863866|gb|EEF00997.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297737742|emb|CBI26943.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|359472648|ref|XP_002280189.2| PREDICTED: MATE efflux family protein 5 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query398
TAIR|locus:2037858481 AT1G15170 "AT1G15170" [Arabido 0.967 0.800 0.592 1e-132
TAIR|locus:2037868482 AT1G15180 "AT1G15180" [Arabido 0.967 0.798 0.589 8.4e-129
TAIR|locus:2037723487 AT1G15150 "AT1G15150" [Arabido 0.967 0.790 0.571 7.6e-128
TAIR|locus:2037848487 AT1G15160 "AT1G15160" [Arabido 0.967 0.790 0.576 7.6e-128
TAIR|locus:2026311485 AT1G71140 "AT1G71140" [Arabido 0.964 0.791 0.606 1.2e-127
TAIR|locus:2033334482 AT1G66760 "AT1G66760" [Arabido 0.964 0.796 0.489 7.5e-105
TAIR|locus:2033309485 AT1G66780 "AT1G66780" [Arabido 0.964 0.791 0.502 1.8e-103
TAIR|locus:2050180476 AT2G04050 "AT2G04050" [Arabido 0.982 0.821 0.487 2.6e-102
TAIR|locus:2050185476 AT2G04080 "AT2G04080" [Arabido 0.962 0.804 0.493 5.4e-102
TAIR|locus:2010926502 AT1G64820 [Arabidopsis thalian 0.962 0.762 0.483 6.9e-102
TAIR|locus:2037858 AT1G15170 "AT1G15170" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1301 (463.0 bits), Expect = 1.0e-132, P = 1.0e-132
 Identities = 228/385 (59%), Positives = 297/385 (77%)

Query:     1 MASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQIS 60
             ++ AL+TL GQAYGA+ Y+++G QTYTA+FCL LVC PLS +W    KLL+++GQDP I+
Sbjct:    92 LSCALDTLSGQAYGAKLYRKLGVQTYTAMFCLALVCLPLSLIWFNMEKLLLILGQDPSIA 151

Query:    61 HEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSXX 120
             HE GK+  WL+P LFAYA +QPL RYFQ+QSLI P+ ++S    C+H+P+CW LVY S  
Sbjct:   152 HEAGKYATWLIPGLFAYAVLQPLTRYFQNQSLITPLLITSYVVFCIHVPLCWFLVYNSGL 211

Query:   121 XXXXXXXXXXXSNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMIC 180
                        SNWL   FL  +M +S+AC+E+R P+SME+F GIGEFF +A+PSA MIC
Sbjct:   212 GNLGGALAISLSNWLYAIFLGSFMYYSSACSETRAPLSMEIFDGIGEFFKYALPSAAMIC 271

Query:   181 LEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNV 240
             LEWWS+EL+IL+SGLLPNPQLETSVLSVCL TI T+Y+IP  + AA STR+SNELGAGN 
Sbjct:   272 LEWWSYELIILLSGLLPNPQLETSVLSVCLQTISTMYSIPLAIAAAASTRISNELGAGNS 331

Query:   241 QKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMD 300
             + A + VYA + +AV + ++VS +L   R +FG++FS++K+ +DYV  MAPLV +S+++D
Sbjct:   332 RAAHIVVYAAMSLAVIDALIVSMSLLIGRNLFGHIFSSDKETIDYVAKMAPLVSISLMLD 391

Query:   301 SLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQ 360
             +LQGV SG+ARGCGWQ+I A++NLGAFYL GIP AA L FW+  +G GLWIGIQAGA  Q
Sbjct:   392 ALQGVLSGIARGCGWQHIGAYINLGAFYLWGIPIAASLAFWIHLKGVGLWIGIQAGAVLQ 451

Query:   361 TLLLGIITTCTNWEKQASKARERIS 385
             TLLL ++T CTNWE QA KAR R++
Sbjct:   452 TLLLALVTGCTNWESQADKARNRMA 476
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0009507 "chloroplast" evidence=IDA
TAIR|locus:2037868 AT1G15180 "AT1G15180" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037723 AT1G15150 "AT1G15150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2037848 AT1G15160 "AT1G15160" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026311 AT1G71140 "AT1G71140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2033334 AT1G66760 "AT1G66760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2033309 AT1G66780 "AT1G66780" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050180 AT2G04050 "AT2G04050" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050185 AT2G04080 "AT2G04080" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010926 AT1G64820 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q10085YAO6_SCHPONo assigned EC number0.30860.95470.8351yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query398
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-151
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 1e-45
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 1e-41
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 6e-40
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 3e-26
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 2e-24
pfam01554161 pfam01554, MatE, MatE 1e-21
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 2e-19
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 1e-17
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 4e-14
pfam01554161 pfam01554, MatE, MatE 1e-13
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 6e-12
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 2e-10
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 4e-10
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 3e-09
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 1e-08
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 4e-07
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 3e-06
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 4e-06
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 3e-05
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  433 bits (1117), Expect = e-151
 Identities = 166/379 (43%), Positives = 244/379 (64%), Gaps = 1/379 (0%)

Query: 1   MASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQIS 60
           +ASAL+TLCGQA+GA+ Y+ +G     A+  L L C P+S LW+    +L+L+GQDP+I+
Sbjct: 59  LASALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIA 118

Query: 61  HEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSGL 120
              G+++ WL+P LFAYA  +PL RY Q+Q +++P+   S  AL L+I + + LV+  GL
Sbjct: 119 RLAGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGL 178

Query: 121 GNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMELFQGIGEFFHFAIPSAVMIC 180
           G +G ALA  IS WL V  L +Y+ FS     +    S E F+G G F   AIPSA+M+C
Sbjct: 179 GFIGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLC 238

Query: 181 LEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELGAGNV 240
           LEWW+FE+L+L++GLLP   +  +  S+CL T   LY IP G+  A S RV NELGAGN 
Sbjct: 239 LEWWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNP 297

Query: 241 QKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMD 300
           ++A++A    + +++   +VV+  L   R V+ Y+F+++++V+  V  + P++ L  I D
Sbjct: 298 KRAKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFD 357

Query: 301 SLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQ 360
            LQ V SGV RGCG Q + A+VNL A+YL G+P   +L F L    +GLWIG+ AG   Q
Sbjct: 358 GLQAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGLKGLWIGLIAGLILQ 417

Query: 361 TLLLGIITTCTNWEKQASK 379
            ++L +I   T+W+K+A K
Sbjct: 418 AVILLLIILRTDWDKEAEK 436

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 398
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 100.0
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.97
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.94
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.94
PRK00187 464 multidrug efflux protein NorA; Provisional 99.93
PRK10459492 colanic acid exporter; Provisional 99.93
PRK10189 478 MATE family multidrug exporter; Provisional 99.93
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.92
PRK01766 456 multidrug efflux protein; Reviewed 99.92
COG2244480 RfbX Membrane protein involved in the export of O- 99.89
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.83
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.83
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.54
TIGR02900 488 spore_V_B stage V sporulation protein B. SpoVB is 99.52
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.4
TIGR01695 502 mviN integral membrane protein MviN. This model re 99.4
PRK15099 416 O-antigen translocase; Provisional 99.32
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.3
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.29
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.26
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.19
PRK10459492 colanic acid exporter; Provisional 98.87
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.79
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 98.62
COG2244480 RfbX Membrane protein involved in the export of O- 98.54
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.38
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.31
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 98.2
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 98.03
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.02
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 97.86
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 97.4
COG4267467 Predicted membrane protein [Function unknown] 97.18
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 97.01
PF14184132 YrvL: Regulatory protein YrvL 83.89
COG4267 467 Predicted membrane protein [Function unknown] 83.52
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=4.6e-53  Score=399.22  Aligned_cols=376  Identities=22%  Similarity=0.324  Sum_probs=354.2

Q ss_pred             CcchhhhHHHhhhCCCccchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHH
Q 015932            1 MASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFL-WIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYAT   79 (398)
Q Consensus         1 l~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~l~~~~~~~~~~~~y~~~~~~~~~~~~~   79 (398)
                      +++|+++++||++|+||++++++..+++++++++++++.+++ +.+.+|++.+++.++|+.+.+.+|+++..++.|+..+
T Consensus        72 l~~g~~~liaq~~Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~  151 (455)
T COG0534          72 LGTGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALL  151 (455)
T ss_pred             HHHhHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence            367999999999999999999999999999999999888887 9999999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhcCchhhHHHHHHHHHHhhhhhhhhhhcc-cc-cccchhHHHHHHHHHHHHHHHHHHHHhccc-ccccCCC
Q 015932           80 MQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYK-SG-LGNLGGALAIGISNWLNVTFLAIYMKFSTA-CAESRVP  156 (398)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~-~~-~g~~gaa~at~i~~~~~~~~~~~~~~~~~~-~~~~~~~  156 (398)
                      +..+++.+|+.|+++.+++.+++.+++|+++|++|+++ ++ +|+.|+++||+++++++.+...++++++++ ......+
T Consensus       152 ~~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~  231 (455)
T COG0534         152 SFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKK  231 (455)
T ss_pred             HHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhh
Confidence            99999999999999999999999999999999999999 57 999999999999999999999999988875 2222233


Q ss_pred             CChHHHhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 015932          157 ISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNELG  236 (398)
Q Consensus       157 ~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~vs~~~g  236 (398)
                      ..+++++.+|+++++|+|..+++..+...+.....+.+++|++  ++|+|+++.++.++.++++.|++++.+++++|++|
T Consensus       232 ~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G~~--~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~G  309 (455)
T COG0534         232 LLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLGTV--ALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLG  309 (455)
T ss_pred             ccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            4455667889999999999999999999999999999999975  66999999999999999999999999999999999


Q ss_pred             CCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccccCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcc
Q 015932          237 AGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGWQ  316 (398)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~  316 (398)
                      +||+|++|+..+.+..++..+++..+.+++++++++..+|++|+|+.+.+..++++..+..++++.+.+..+.+||.||+
T Consensus       310 a~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~  389 (455)
T COG0534         310 AGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDA  389 (455)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHhhhhHHHHHHHhcCCCcchHhHHHHHHHHHHHHHHHHHHHhCCHHHHHHH
Q 015932          317 NIAAFVNLGAFYLCGIPTAAILGFWLKFRGRGLWIGIQAGAFTQTLLLGIITTCTNWEKQASK  379 (398)
Q Consensus       317 ~~~~~~~~~~~~~~~i~l~~~l~~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~  379 (398)
                      +.++..++++.|.+.+|+.+++.+.. +|..|+|+++..++.+..+...+++++++|++...+
T Consensus       390 ~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  451 (455)
T COG0534         390 KIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVA  451 (455)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhh
Confidence            99999999999999999999999665 999999999999999999999999999888876444

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>PF14184 YrvL: Regulatory protein YrvL Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query398
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 2e-11
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 66.6 bits (161), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 82/379 (21%), Positives = 150/379 (39%), Gaps = 25/379 (6%)
Query: 4   ALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEV 63
           AL  +  Q  GA +  +I  + +  +    LV  P+  +      ++  +  +  ++ + 
Sbjct: 70  ALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKT 129
Query: 64  GKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSXXXXX 123
             +M  ++ A+ AY   Q L  +    SL  P  +     L L+IP+ W  VY       
Sbjct: 130 VGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPE 189
Query: 124 XXXXXXXXSN----WLNVTFLAIYMKFSTACAESRV------PISMELFQGIGEFFHFAI 173
                   +     W+ +  L  Y+  S   A  +V      P   EL +     F    
Sbjct: 190 LGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIR----LFRLGF 245
Query: 174 PSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSN 233
           P A  +  E   F ++ L+    P      +   V LN    ++  P  +GAAVS RV +
Sbjct: 246 PVAAALFFEVTLFAVVALLVA--PLGSTVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGH 303
Query: 234 ELGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLV 293
           +LG  + + A +A    +   +    + +      R     +++  + VV     +    
Sbjct: 304 KLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFA 363
Query: 294 CLSVIMDSLQGVFSGVARGCGWQNIAAFVNLG--AFYLCGIPTAAILGF--WLK---FRG 346
            +   MD++Q V +G  R  G++++ A  +    ++++ G+PT  ILG   WL       
Sbjct: 364 AIYQCMDAVQVVAAGSLR--GYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGA 421
Query: 347 RGLWIGIQAGAFTQTLLLG 365
           +G W+G   G     L+LG
Sbjct: 422 KGFWLGFIIGLSAAALMLG 440

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query398
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 1e-73
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  236 bits (603), Expect = 1e-73
 Identities = 81/377 (21%), Positives = 150/377 (39%), Gaps = 13/377 (3%)

Query: 1   MASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQIS 60
           +  AL  +  Q  GA +  +I  + +  +    LV  P+  +      ++  +  +  ++
Sbjct: 67  LLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMA 126

Query: 61  HEVGKFMIWLLPALFAYATMQPLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYKSG- 119
            +   +M  ++ A+ AY   Q L  +    SL  P  +     L L+IP+ W  VY    
Sbjct: 127 TKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFG 186

Query: 120 ---LGNLGGALAIGISNWLNVTFLAIYMKFSTACAESRVPISMEL--FQGIGEFFHFAIP 174
              LG +G  +A  I  W+ +  L  Y+  S   A  +V  +      + +   F    P
Sbjct: 187 APELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFP 246

Query: 175 SAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNE 234
            A  +  E   F ++ L+   L +  +  +   V LN    ++  P  +GAAVS RV ++
Sbjct: 247 VAAALFFEVTLFAVVALLVAPLGSTVV--AAHQVALNFSSLVFMFPMSIGAAVSIRVGHK 304

Query: 235 LGAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVC 294
           LG  + + A +A    +   +    + +      R     +++  + VV     +     
Sbjct: 305 LGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAA 364

Query: 295 LSVIMDSLQGVFSGVARGCGWQNIAAFVNLGAFYLCGIPTAAILGF-----WLKFRGRGL 349
           +   MD++Q V +G  RG             ++++ G+PT  ILG            +G 
Sbjct: 365 IYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGF 424

Query: 350 WIGIQAGAFTQTLLLGI 366
           W+G   G     L+LG 
Sbjct: 425 WLGFIIGLSAAALMLGQ 441

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query398
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A 460 Multi antimicrobial extrusion protein (Na(+)/drug 99.83
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=8.8e-44  Score=340.16  Aligned_cols=369  Identities=22%  Similarity=0.345  Sum_probs=338.5

Q ss_pred             cchhhhHHHhhhCCCccchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCChhHHHHHHHHHHHHHhhHHHHHHHH
Q 015932            2 ASALETLCGQAYGAQQYQRIGTQTYTAIFCLFLVCFPLSFLWIYAGKLLVLIGQDPQISHEVGKFMIWLLPALFAYATMQ   81 (398)
Q Consensus         2 ~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~y~~~~~~~~~~~~~~~   81 (398)
                      +.|..+.+||+.|++|+++.++.+++++.+.++++++.++++.+.+|+..+++.|++..+.+..|+++..++.++..+..
T Consensus        68 ~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~  147 (460)
T 3mkt_A           68 LMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQ  147 (460)
T ss_dssp             HHHHGGGCTTTTSSSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999998877888899999899999999999999999999999999999


Q ss_pred             HHHHHHhhcCchhhHHHHHHHHHHhhhhhhhhhhcc-c---ccccchhHHHHHHHHHHHHHHHHHHHHhccccccc--CC
Q 015932           82 PLIRYFQSQSLIIPMFLSSCAALCLHIPICWSLVYK-S---GLGNLGGALAIGISNWLNVTFLAIYMKFSTACAES--RV  155 (398)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~li~~-~---~~g~~gaa~at~i~~~~~~~~~~~~~~~~~~~~~~--~~  155 (398)
                      .+++.+|+.++.+.+...++++.++|++++++++.. +   ++|+.|+++|+.+++.+..+...++.+++++.++.  +.
T Consensus       148 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (460)
T 3mkt_A          148 ALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFE  227 (460)
T ss_dssp             HHTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSC
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhh
Confidence            999999999999999999999999999999999986 3   79999999999999999999988888776543221  12


Q ss_pred             CCChHHHhcHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 015932          156 PISMELFQGIGEFFHFAIPSAVMICLEWWSFELLILMSGLLPNPQLETSVLSVCLNTIQTLYAIPYGLGAAVSTRVSNEL  235 (398)
Q Consensus       156 ~~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~i~~~~~~~~~~~~~~~~~~vs~~~  235 (398)
                      ++.+.+++..|++++++.|..+++.........+..+++.+|++  ++++|+++.++.++...+..+++++..|.+++++
T Consensus       228 ~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~--~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~  305 (460)
T 3mkt_A          228 TFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGST--VVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKL  305 (460)
T ss_dssp             CCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            23344567889999999999999999999999999999999764  6799999999999999999999999999999999


Q ss_pred             cCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhccccCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCc
Q 015932          236 GAGNVQKARVAVYAVIFMAVTETIVVSATLFASRRVFGYVFSNEKQVVDYVTTMAPLVCLSVIMDSLQGVFSGVARGCGW  315 (398)
Q Consensus       236 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~  315 (398)
                      |++|+|++++..+++.++...++++.+++++++++++..+|++|+++.+.+.+++++.+++.++.+++.+..+++++.||
T Consensus       306 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~  385 (460)
T 3mkt_A          306 GEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKD  385 (460)
T ss_dssp             HSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGST
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            99999999999999999999999999999999999999999999888999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHhhhhHHHHHHHh----cC-CCcchHhHHHHHHHHHHHHHHHHHHHhCC
Q 015932          316 QNIAAFVNLGAFYLCGIPTAAILGFW----LK-FRGRGLWIGIQAGAFTQTLLLGIITTCTN  372 (398)
Q Consensus       316 ~~~~~~~~~~~~~~~~i~l~~~l~~~----~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~  372 (398)
                      ++.+++.++++.|++++|+++++...    ++ +|..|+|+++.+++.+..++..++++|..
T Consensus       386 ~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~  447 (460)
T 3mkt_A          386 MTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQ  447 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999989999999999976    56 99999999999999999888877666543
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00