Citrus Sinensis ID: 015939

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------40
Protein Sequence
MVRQELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSHQLTVPEQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGKASGLGNYQTKTAHIMPY
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHccccHHHHHHHHHHHHHHcccHHHHHHHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHHHccHHHHHHHHHHcHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEcccccccccEHHcccccEEEEccccccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccHHHHHHHHHcccHHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHHccccccEEEcccccHHHHHHHHHHccccccHHHHHHHHHHHHccccccHHHHHHccHHHHHHHHHcccccccHHHHHHHHHHHHHHccHHHHHHHHHcHHHHHHHHHHHHccccHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccEcccccccccc
Coil and Loop (DISEMBL)
mvrqelyiavpnlfrcpisldvmkspvslctgvtydrSSIQHWLesghdtcpatmqilstkefvpnlTLHRLIAHwshqltvpeQEVRVWIEKIKsenesensCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILRegnldskigsikildsisldneskRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGKasglgnyqtktahimpy
Flexible Loop (DISEMBL)
MVRQELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHwshqltvpeQEVRVWIEKIksenesenscVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKIldsisldneskrRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALseeascagrvVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLgkasglgnyqtktahimpy
Low Complexity Region (SEG)
MVRQELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSHQLTVPEQEVRVWiekiksenesensCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGKASGLGNYQTKTAHIMPY
Disordered region (IsUnstruct)
****ELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSHQLTVPEQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGKASGLGNYQ*********
Disordered Region (DISOPRED)
******Y***PNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSHQLTVPEQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFG*************ESAVRVLNLIVNENGVKEK**RLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVER********REDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSE***IVRKMCGDLVKVL************TAHIMPY
Disordered Region (DISEMBL)
MVRQELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSHQLTVPEQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGKASGLGNYQTKTAHIMPY
Disordered Region (DISPRO)
****ELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSHQLTVPEQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGKASGLGNYQTKTAHIMPY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVRQELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSHQLTVPEQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGKASGLGNYQTKTAHIMPY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	398	2.2.26 [Sep-21-2011]
Q9LSA6	415	U-box domain-containing p	yes	no	0.959	0.920	0.401	3e-78
Q9LXE3	409	U-box domain-containing p	no	no	0.979	0.953	0.400	1e-75
Q9FLF4	420	U-box domain-containing p	no	no	0.997	0.945	0.382	6e-68
Q8VZ40	632	U-box domain-containing p	no	no	0.786	0.495	0.289	2e-28
Q5VRH9	611	U-box domain-containing p	no	no	0.781	0.509	0.266	2e-26
Q8GUG9	612	U-box domain-containing p	no	no	0.778	0.506	0.265	1e-25
Q9FHN9	444	U-box domain-containing p	no	no	0.891	0.799	0.267	2e-25
Q9C8D1	431	U-box domain-containing p	no	no	0.927	0.856	0.245	3e-25
Q9SNC6	660	U-box domain-containing p	no	no	0.781	0.471	0.257	5e-25
Q058P4	448	U-box domain-containing p	no	no	0.886	0.787	0.263	2e-24

>sp|Q9LSA6|PUB29_ARATH U-box domain-containing protein 29 OS=Arabidopsis thaliana GN=PUB29 PE=1 SV=1

 Score =  292 bits (748), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 169/421 (40%), Positives = 266/421 (63%), Gaps = 39/421 (9%)

Query: 5   ELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFV 64
           E YI VP+ F+CPISLDVM+SPVSLCTGVTYDR+SIQ WL+ G++TCPATMQ+L TK+FV
Sbjct: 7   ETYITVPSFFKCPISLDVMRSPVSLCTGVTYDRASIQRWLDGGNNTCPATMQLLKTKDFV 66

Query: 65  PNLTLHRLIAHWSHQL-----------------TVP-EQEVRVWIEKIKSENESENSCVD 106
           PNLTL RLI  WS  +                  VP ++EV V +E++ S        ++
Sbjct: 67  PNLTLQRLINIWSDSIGRRHNGDSPVLNPPSGREVPTKEEVNVLLERLMS--------LE 118

Query: 107 YLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGV 166
            L+K+ +F    ++NR FL+    FV  +  ++ R ++++I ++  A+R+L+ I  +   
Sbjct: 119 NLMKIVRFVKDSDSNREFLSKKMEFVPMLVDII-RTKKTKIELVIMAIRILDSIKVD--- 174

Query: 167 KEKLNRLIL--NTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLS 224
           +E+L+ L+L  +  +CL   L  ++ GNL+SKI S+++LD IS D +SK  + E + +L+
Sbjct: 175 RERLSNLMLANDGGDCLTAILLAIQRGNLESKIESVRVLDWISFDAKSKLMIAERDGVLT 234

Query: 225 ALFDYLKLAE--DQALNDAILSILITLSVYRSVKAQLVEL-GMVQILTRILSDSRTQILT 281
            +   + + E  D +L +A LS LIT+S  + V+++L+    + +I   +L+++ T +  
Sbjct: 235 EMMKSISITESSDPSLIEASLSFLITISKSKRVRSKLIAAKAITKIKDILLTETLTNVAV 294

Query: 282 VEKSIKMLSIVATCSEGRLAL--SEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYK 339
            EKS+K+L  +++  EGRL +   +   C   VV++++KV  TA E AV ++W +C V++
Sbjct: 295 TEKSLKLLETLSSKREGRLEICGDDNGRCVEGVVKKLLKVSTTATEHAVTILWCLCYVFR 354

Query: 340 -DARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLG-KASGLGNYQTKTAHIMP 397
            D  V+E V  SNG+TKLL+V+QS    +VR+M  DL+KVL   +S L  Y+TKT HIMP
Sbjct: 355 EDKTVEETVERSNGVTKLLVVIQSNCSAMVRQMAKDLIKVLKFNSSALAAYETKTTHIMP 414

Query: 398 Y 398
           +
Sbjct: 415 F 415

Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9LXE3|PUB28_ARATH U-box domain-containing protein 28 OS=Arabidopsis thaliana GN=PUB28 PE=1 SV=1

 Score =  283 bits (725), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 167/417 (40%), Positives = 248/417 (59%), Gaps = 27/417 (6%)

Query: 1   MVRQELYIA-VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILS 59
           M   +LYI  VP  F+CPISLDVMKSPVSL TGVTYDR SIQ WL+ G++TCPATMQIL 
Sbjct: 1   MRSDDLYITTVPCFFKCPISLDVMKSPVSLSTGVTYDRVSIQRWLDDGNNTCPATMQILQ 60

Query: 60  TKEFVPNLTLHRLIAHWSHQL------------TVPEQEVRVWIEKIKSENESENSCVDY 107
            KEFVPNLTLHRLI HWS  +            T    E+   IE+ + EN++ +     
Sbjct: 61  NKEFVPNLTLHRLIDHWSDSINRRADSESPESDTPTRDEINAAIERFRIENDARS----- 115

Query: 108 LVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRR---SEIAVLESAVRVLNLIVNEN 164
             K+ +FA   + NR FLA    FV  +  +++  R    S++ ++  AV++L++I  + 
Sbjct: 116 --KILRFARESDENREFLAGKDDFVAMLVDLISDSRNFSDSQLLLVGEAVKILSMIRRKI 173

Query: 165 GVKEKLNRLIL-NTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLL 223
             + +L+ LIL N  +CL  F  +++ GN   KI    +L+ I++D ESK  + + E L+
Sbjct: 174 FDRRRLSNLILTNGGDCLTSFFLLIKRGNPKLKIDCSAVLEFIAVDAESKLIIAKGEGLV 233

Query: 224 SALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVE 283
           + +   +    D +L +A LS+LI ++  + VK  L+   +V  LT +L+D  T +   E
Sbjct: 234 TEIIKLISSDSDSSLIEANLSLLIAIASSKRVKLALIREKLVTKLTSLLTDPTTSVSVTE 293

Query: 284 KSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARV 343
           K +K+L  +++C EGR  +  +  C   VV ++MKV   A E AV V+WS+C ++K+ + 
Sbjct: 294 KCLKLLEAISSCKEGRSEIC-DGVCVETVVNKLMKVSTAATEHAVTVLWSVCYLFKEKKA 352

Query: 344 KEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVL--GKASGLGNYQTKTAHIMPY 398
           ++AV+  NG+TK+LL++QS     VR M  DL+KV      S L  Y+TKT HIMP+
Sbjct: 353 QDAVIRINGVTKILLLLQSNCSLTVRHMLTDLLKVFKVNSRSCLSVYETKTTHIMPF 409

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9FLF4|PUB27_ARATH U-box domain-containing protein 27 OS=Arabidopsis thaliana GN=PUB27 PE=2 SV=1

 Score =  258 bits (658), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 161/421 (38%), Positives = 246/421 (58%), Gaps = 24/421 (5%)

Query: 1   MVRQELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILST 60
           M + +L I VP  FRCPISLDVMKSPVSLCTGVTYDR+SIQ WL+ G++TCPATMQIL  
Sbjct: 1   MRKDDLCITVPTFFRCPISLDVMKSPVSLCTGVTYDRASIQRWLDGGNNTCPATMQILQN 60

Query: 61  KEFVPNLTLHRLIAHWSH-----------QLTVPEQ-EVRVWIEKIKSENESENSCVDYL 108
           K+F+PN TL RLI  WS            +L  P + E+   I+++K E E E    + L
Sbjct: 61  KDFIPNRTLQRLIEIWSDSVRRRTCVESAELAAPTRDEIADAIDRVKIEKE-ERDDREVL 119

Query: 109 VKVAKFATGCEANRRFLASYGGFVEAVFGVLNR-----KRRSEIAVLESAVRVLNLIVNE 163
            K+ +F    + NR FLA    FV+ +  ++N+        ++  V++ AV++L+ I ++
Sbjct: 120 SKIVRFGRESDDNRGFLAGKDDFVKLLVDLINQVDFETTSAAKSLVVQEAVKILSTIRSK 179

Query: 164 NGVKEKLNRLIL-NTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENL 222
              + + + LIL N  + L + + + + GN++ KI    +L+ I++D ESK  + E + L
Sbjct: 180 VSDRRRFSNLILTNGRDRLSVIVYLFKTGNVELKIDCAGLLEFIAVDAESKLLIAERDGL 239

Query: 223 LSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTR--ILSDSRTQIL 280
           ++ L   +    D +L ++ LS LI +S  + VK  L+   ++  +T+    S S   + 
Sbjct: 240 ITELMKSISKDSDLSLIESSLSCLIAISSPKRVKLNLLREKLIGDVTKLLSDSTSSLSVS 299

Query: 281 TVEKSIKMLSIVATCSEGRLAL-SEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYK 339
             EK +K+L I+A+  EGR  +   +  C   VV+++MKV   A E AV V+WS+  ++K
Sbjct: 300 VTEKCLKLLEILASTKEGRSEICGGDGECLKTVVKKLMKVSTAATEHAVTVLWSVSYLFK 359

Query: 340 DARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVL--GKASGLGNYQTKTAHIMP 397
           + +  EAV + NG+TK+LL++QS     VR+M  DL+KV      S L  Y TKT HIMP
Sbjct: 360 EDKALEAVTSVNGVTKILLLLQSNCSPAVRRMLTDLLKVFKVNSRSCLSAYDTKTTHIMP 419

Query: 398 Y 398
           +
Sbjct: 420 F 420

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1

 Score =  127 bits (318), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 172/345 (49%), Gaps = 32/345 (9%)

Query: 10  VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTL 69
           +P  FRCPISL++MK PV + TG TY+RSSIQ WL++GH TCP + + L      PN  L
Sbjct: 248 IPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 307

Query: 70  HRLIAHW--SHQLTVPEQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLAS 127
             LIA W  S+ + +P+ +      KI   + S+      L  + K A G    +R  A 
Sbjct: 308 KSLIALWCESNGIELPQNQGSCRTTKIGGSSSSDCDRTFVLSLLEKLANGTTEQQRAAAG 367

Query: 128 YGGFVEAVFGVLNRKRRSEIAVL----------------ESAVRVLNLIVNENGVKEKLN 171
               + A   V NR   +E   +                 S   +LNL +NE       N
Sbjct: 368 ELRLL-AKRNVDNRVCIAEAGAIPLLVELLSSPDPRTQEHSVTALLNLSINEG------N 420

Query: 172 RLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLK 231
           +  +     +   +E+L+ G+++++  +   L S+S+ +E+K  +      + AL   L+
Sbjct: 421 KGAIVDAGAITDIVEVLKNGSMEARENAAATLFSLSVIDENKVAIG-AAGAIQALISLLE 479

Query: 232 LAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSI 291
               +   DA  +I   L +Y+  K++ V+ G+V  LTR+L D+   +  V++++ +L+I
Sbjct: 480 EGTRRGKKDAATAIF-NLCIYQGNKSRAVKGGIVDPLTRLLKDAGGGM--VDEALAILAI 536

Query: 292 VATCSEGRLALSEEASCAGRVVERVMKVGKT-AREDAVVVIWSMC 335
           ++T  EG+ A++E  S    V+  +++ G    RE+A  ++W +C
Sbjct: 537 LSTNQEGKTAIAEAESIP--VLVEIIRTGSPRNRENAAAILWYLC 579

Functions as an E3 ubiquitin ligase with specific E2 ubiquitin-conjugating enzymes. Undergoes auto-ubiquitination.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5VRH9|PUB12_ORYSJ U-box domain-containing protein 12 OS=Oryza sativa subsp. japonica GN=PUB12 PE=2 SV=1

 Score =  120 bits (300), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 170/345 (49%), Gaps = 34/345 (9%)

Query: 10  VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTL 69
           +P+ FRCPISL++M+ PV + +G TY+RS IQ WL+SGH TCP T Q LS     PN  L
Sbjct: 228 IPDEFRCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSLTPNFVL 287

Query: 70  HRLIAHW--SHQLTVPEQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEA------- 120
             LI+ W  ++ + +P+ +     +K    ++ +++ +  L+   +     E        
Sbjct: 288 KSLISQWCEANGIELPKNKQNSRDKKAAKSSDYDHAGLVSLMNRLRSGNQDEQRAAAGEI 347

Query: 121 --------NRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVR-VLNLIVNENGVKEKLN 171
                   N R   +  G +  +  +L+    S+    E AV  +LNL ++EN      N
Sbjct: 348 RLLAKRNVNNRICIAEAGAIPLLVNLLS---SSDPRTQEHAVTALLNLSIHEN------N 398

Query: 172 RLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLK 231
           +  +   + +P  +E+L+ G+++++  +   L S+S+ +E+K   +     +  L + L 
Sbjct: 399 KASIVDSHAIPKIVEVLKTGSMETRENAAATLFSLSVVDENK-VTIGAAGAIPPLINLLC 457

Query: 232 LAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSI 291
               +   DA  +I   L +Y+  K + V+ G+V  L   L D    +  +++++ +LSI
Sbjct: 458 DGSPRGKKDAATAIF-NLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGM--IDEALSLLSI 514

Query: 292 VATCSEGRLALSEEASCAGRVVERVMKVGKT-AREDAVVVIWSMC 335
           +A   EG++ ++        V   V+K G    RE+A  ++W +C
Sbjct: 515 LAGNPEGKIVIARSEPIPPLV--EVIKTGSPRNRENAAAILWLLC 557

Possesses E3 ubiquitin-protein ligase in vitro.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2

 Score =  117 bits (294), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 175/346 (50%), Gaps = 36/346 (10%)

Query: 8   IAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNL 67
           + +P  F CP+SL++MK PV + TG TY+R+ IQ W++ G+ TCP T Q L      PN 
Sbjct: 239 LTIPVDFLCPVSLELMKDPVIVATGQTYERAYIQRWIDCGNLTCPKTQQKLENFTLTPNY 298

Query: 68  TLHRLIAHW--SHQLTVPE-------------QEVRVWIEKIKSEN-ESENSCVDYLVKV 111
            L  LI+ W   H +  P                +R  ++++ S + E   + V  +  +
Sbjct: 299 VLRSLISRWCAEHNIEQPAGYINGRTKNSGDMSVIRALVQRLSSRSTEDRRNAVSEIRSL 358

Query: 112 AKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVR-VLNLIVNENGVKEKL 170
           +K +T    + R L +  G +  +  +L  +   ++A  E+A+  VLNL + EN      
Sbjct: 359 SKRST----DNRILIAEAGAIPVLVNLLTSE---DVATQENAITCVLNLSIYEN------ 405

Query: 171 NRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYL 230
           N+ ++     +   +++LR G ++++  +   L S+SL +E+K  ++     + AL D L
Sbjct: 406 NKELIMFAGAVTSIVQVLRAGTMEARENAAATLFSLSLADENK-IIIGGSGAIPALVDLL 464

Query: 231 KLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLS 290
           +    +   DA  + L  L +Y   K + V  G+V  L ++LSDS T+   V++++ +LS
Sbjct: 465 ENGTPRGKKDAA-TALFNLCIYHGNKGRAVRAGIVTALVKMLSDS-TRHRMVDEALTILS 522

Query: 291 IVATCSEGRLALSEEASCAGRVVERVMKVGKT-AREDAVVVIWSMC 335
           ++A   + + A+ +  +    +   +++  +T  RE+A  ++ S+C
Sbjct: 523 VLANNQDAKSAIVKANTLPALI--GILQTDQTRNRENAAAILLSLC 566

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9FHN9|PUB31_ARATH U-box domain-containing protein 31 OS=Arabidopsis thaliana GN=PUB31 PE=2 SV=1

 Score =  117 bits (292), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 101/378 (26%), Positives = 187/378 (49%), Gaps = 23/378 (6%)

Query: 10  VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTL 69
           +P++F CPISL+ M+ PV+LCTG TY+RS+I  W   GH TCP TMQ L      PN TL
Sbjct: 60  IPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFNIGHCTCPTTMQELWDDLVTPNKTL 119

Query: 70  HRLIAHWSHQLTV-----PEQEVRVWIEKIKSENESENSC-VDYLVKVAKFATGCEANRR 123
           H+LI  W  Q  V      E      IE + +  +++    V  L ++ +        ++
Sbjct: 120 HQLIYTWFSQKYVLMKKRSEDVQGRAIEILGTLRKAKGKAKVHALSELKQVVMAHAIAKK 179

Query: 124 FLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPL 183
            +   GG    V   L     S     E+   ++NL ++ +      ++  L     + L
Sbjct: 180 TVVDEGGVF--VISSLLSPFTSHAVGSEAIAILVNLELDSD------SKAGLMQPARVSL 231

Query: 184 FLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAI- 242
            +++L +G++++KI   +++  +  +   +  ++ + +LL  L   ++L +D+   + + 
Sbjct: 232 MVDMLNDGSIETKINCARLIGRLVEEKGFRAELVSSHSLLVGL---MRLVKDRRRRNGVS 288

Query: 243 --LSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRL 300
             L++L ++SV++ V+  LV +G V  L  +L     + L  E ++ +L  +   SEGR+
Sbjct: 289 PALTLLKSVSVHKQVRNLLVRIGAVPQLVDVLPCLDVECL--ESALFVLDSLCLESEGRI 346

Query: 301 ALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVM 360
           AL +  +     V  +MKV +     A+ ++WS+C +  +       V      KLLLV+
Sbjct: 347 ALKDSVNTIPHTVRLLMKVSEKCTNYAISILWSVCKLASE-ECSSLAVEVGLAAKLLLVI 405

Query: 361 QSENEGIVRKMCGDLVKV 378
           QS  +  +++   +L+K+
Sbjct: 406 QSGCDPALKQRSAELLKL 423

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9C8D1|PUB20_ARATH U-box domain-containing protein 20 OS=Arabidopsis thaliana GN=PUB20 PE=2 SV=1

 Score =  116 bits (291), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 201/403 (49%), Gaps = 34/403 (8%)

Query: 4   QELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEF 63
           +E+ I +P+ F+CPIS ++MK PV + +G+TYDR +I+ W ESG+ TCP T  +L++ E 
Sbjct: 27  EEVEITIPSQFQCPISYELMKDPVIIASGITYDRENIEKWFESGYQTCPVTNTVLTSLEQ 86

Query: 64  VPNLTLHRLIAHW-------------SHQLTVPEQEVRVWIEKIKSENESEN--SCVDYL 108
           +PN T+ R+I  W             + ++ V   +V    E++ +     +  +C++ +
Sbjct: 87  IPNHTIRRMIQGWCGSSLGGGIERIPTPRVPVTSHQVSEICERLSAATRRGDYAACMEMV 146

Query: 109 VKVAKFATGCEANRRFLASYG-GFVEAV-FGVLNRKRRSEIAVLESAVRVLNLIVNENGV 166
            K+ +     E NR+ +   G G V  V F   +    + + +LE  V VL  ++   G+
Sbjct: 147 TKMTRLGKESERNRKCVKENGAGLVLCVCFDAFSENANASL-LLEETVSVLTWML-PIGL 204

Query: 167 KEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSAL 226
           + +      +++N L   +E+LR G+ ++     ++L+     N +    L   N +   
Sbjct: 205 EGQSKLTTTSSFNRL---VELLRNGDQNAAFLIKELLEL----NVTHVHALTKINGVQEA 257

Query: 227 FDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSI 286
           F    +  D    ++++SI   +   +   ++ +EL +V I   +L DS   +   EK++
Sbjct: 258 F-MKSINRDSTCVNSLISIHHMILTNQETVSRFLELDLVNITVEMLVDSENSV--CEKAL 314

Query: 287 KMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEA 346
            +L+++    EGR  +         +V++++K+  + ++D V V+W +C     + V+EA
Sbjct: 315 TVLNVICETKEGREKVRRNKLVIPILVKKILKI--SEKKDLVSVMWKVCKSGDGSEVEEA 372

Query: 347 VVNSNGLTKLLLVMQ-SENEGIVRKMCGDLVKVLGKASGLGNY 388
            +      KL++++Q    EG   K+  +L+K++ K   +  +
Sbjct: 373 -LRLGAFKKLVVMLQVGCGEGTKEKVT-ELLKMMNKVMKMNGF 413

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1

 Score =  115 bits (288), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/346 (25%), Positives = 171/346 (49%), Gaps = 35/346 (10%)

Query: 10  VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTL 69
           +P+ FRCPISL++M+ PV + +G TY+R+ I+ W+E GH TCP T Q L++    PN  L
Sbjct: 256 IPDDFRCPISLEMMRDPVIVSSGQTYERTCIEKWIEGGHSTCPKTQQALTSTTLTPNYVL 315

Query: 70  HRLIAHW--SHQLTVPEQEVRVWIEKIK--SENESENSCVDYLVKVA-------KFATG- 117
             LIA W  ++ +  P+    +   K+   S     N   D + ++A       + A G 
Sbjct: 316 RSLIAQWCEANDIEPPKPPSSLRPRKVSSFSSPAEANKIEDLMWRLAYGNPEDQRSAAGE 375

Query: 118 ------CEANRRFLASYGGFVEAVFGVLNRK--RRSEIAVLESAVRVLNLIVNENGVKEK 169
                   A+ R   +  G +  + G+L+    R  E     S   +LNL + EN     
Sbjct: 376 IRLLAKRNADNRVAIAEAGAIPLLVGLLSTPDSRIQE----HSVTALLNLSICEN----- 426

Query: 170 LNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDY 229
            N+  + +   +P  +++L++G+++++  +   L S+S+ +E+K   +     +  L   
Sbjct: 427 -NKGAIVSAGAIPGIVQVLKKGSMEARENAAATLFSLSVIDENK-VTIGALGAIPPLVVL 484

Query: 230 LKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKML 289
           L     +   DA  + L  L +Y+  K + +  G++  LTR+L++  + +  V++++ +L
Sbjct: 485 LNEGTQRGKKDAA-TALFNLCIYQGNKGKAIRAGVIPTLTRLLTEPGSGM--VDEALAIL 541

Query: 290 SIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMC 335
           +I+++  EG+ A+   +     +VE +       RE+A  V+  +C
Sbjct: 542 AILSSHPEGK-AIIGSSDAVPSLVEFIRTGSPRNRENAAAVLVHLC 586

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q058P4|PUB30_ARATH U-box domain-containing protein 30 OS=Arabidopsis thaliana GN=PUB30 PE=2 SV=1

 Score =  113 bits (283), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/380 (26%), Positives = 184/380 (48%), Gaps = 27/380 (7%)

Query: 10  VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTL 69
           +P++F CPISL+ M+ PV+LCTG TY+R +I  W   GH TCP TMQ L      PN TL
Sbjct: 64  IPSVFICPISLEPMQDPVTLCTGQTYERLNIHKWFNLGHLTCPTTMQELWDDTVTPNKTL 123

Query: 70  HRLIAHWSHQLTV-----PEQEVRVWIEKIKSENESENSC-VDYLVKVAKFATGCEANRR 123
           H LI  W  Q  V      E      IE + +  +++    V  L ++ +        R+
Sbjct: 124 HHLIYTWFSQKYVLMKKRSEDVQGRAIEILGTLKKAKGQARVHALSELKQIVIAHLMARK 183

Query: 124 FLASYGG--FVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCL 181
            +   GG   + ++ G          AV    V +L  +  ++  K  L +        +
Sbjct: 184 TVVEEGGVSVISSLLGPFTSH-----AVGSEVVAILVSLDLDSDSKSGLMQ-----PAKV 233

Query: 182 PLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDA 241
            L +++L +G+ ++KI   +++  +  +   +  ++ + +LL  L   ++L +D+   + 
Sbjct: 234 SLIVDMLNDGSNETKINCARLIRGLVEEKGFRAELVSSHSLLVGL---MRLVKDKRHRNG 290

Query: 242 I---LSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEG 298
           +   L +L  +SV++ V++ +V +G V  L  IL     + L  E ++ +L  + T  EG
Sbjct: 291 VSPALRLLKPISVHKQVRSLMVSIGAVPQLVDILPSLDPECL--ELALFVLDALCTDVEG 348

Query: 299 RLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLL 358
           R+A+ + A+     V  +M+V +     A+ ++WS+C +  +       V      KLLL
Sbjct: 349 RVAVKDSANTIPYTVRVLMRVSENCTNYALSILWSVCKLAPE-ECSPLAVEVGLAAKLLL 407

Query: 359 VMQSENEGIVRKMCGDLVKV 378
           V+QS  +  +++   +L+K+
Sbjct: 408 VIQSGCDAALKQRSAELLKL 427

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	398
224062920	411	predicted protein [Populus trichocarpa]	0.977	0.946	0.533	1e-115
224085091	411	predicted protein [Populus trichocarpa]	0.982	0.951	0.540	1e-114
255570336	400	ubiquitin-protein ligase, putative [Rici	0.954	0.95	0.545	1e-113
225463889	400	PREDICTED: U-box domain-containing prote	0.982	0.977	0.481	1e-90
147805215	400	hypothetical protein VITISV_025009 [Viti	0.982	0.977	0.479	4e-90
13539578	418	photoperiod responsive protein [Solanum	0.979	0.933	0.470	8e-89
225431543	412	PREDICTED: U-box domain-containing prote	0.989	0.956	0.415	1e-87
224131194	407	predicted protein [Populus trichocarpa]	0.992	0.970	0.443	8e-87
356561458	414	PREDICTED: U-box domain-containing prote	0.972	0.934	0.444	9e-84
224093334	414	photoperiod-response-like protein [Popul	0.994	0.956	0.427	2e-83

>gi|224062920|ref|XP_002300932.1| predicted protein [Populus trichocarpa] gi|222842658|gb|EEE80205.1| predicted protein [Populus trichocarpa]

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 223/418 (53%), Positives = 300/418 (71%), Gaps = 29/418 (6%)

Query: 1   MVRQELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILST 60
           M R EL++ VP+LFRCPISLDVMKSPVSLCTGVTYDRSSIQHWL+SGHDTCPATMQILS+
Sbjct: 1   MGRDELFLTVPSLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLDSGHDTCPATMQILSS 60

Query: 61  KEFVPNLTLHRLIAHWSHQLT---------VPEQEVRVWIEKIKSENESENSCVDYLVKV 111
           K+FVPNLTLHRLI  W+             V E++VRVWIE+IKS       C+D +V+ 
Sbjct: 61  KDFVPNLTLHRLINLWTTTAATKSSALAPAVSEEKVRVWIEEIKSGKIER--CLDSIVE- 117

Query: 112 AKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLN 171
             F +  E +RRFL S+ GF+EA+ GVLN     +I VLES +RVL+ ++ ENGV EKL+
Sbjct: 118 --FVSCGEVSRRFLVSFDGFLEAIVGVLN-TNCVQIRVLESVIRVLSSLLLENGVNEKLH 174

Query: 172 RLILNT-YNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYL 230
           +L+  +  NCLP F+ +LR G+L+  I  + +L+SI+++N+SK+ V  T+++L  L   L
Sbjct: 175 KLVFTSNSNCLPSFISVLRNGSLEYNIACVTVLESITINNQSKQLVAGTQDVLPVLLQLL 234

Query: 231 KLAED-QALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKML 289
           K   D Q LN+ +LS LI++S+  S+K +LV+LG+V++L+ +L      +  VEKS+K L
Sbjct: 235 KTDNDHQDLNEVVLSFLISVSITLSIKTRLVQLGLVEVLSSMLLSQNAAVSVVEKSLKAL 294

Query: 290 SIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVN 349
           S++ T ++GR A+S + +CAG +VER+MKV KTA EDAVVV+WSMCC+++D +V E VV 
Sbjct: 295 SMICTRADGRSAISVDPTCAGAIVERLMKVSKTATEDAVVVLWSMCCLFRDEKVLERVVR 354

Query: 350 SNGLTKLLLVMQSE-NEGIVRKMCGDLVKVLGKASGLGN---------YQTKTAHIMP 397
           SNG+TK+LL+MQSE  EG VR+MCGDL+KVL    G  N         Y+TKT HIMP
Sbjct: 355 SNGVTKVLLIMQSEVGEGNVRRMCGDLIKVL--RFGCKNGGGLGGAVSYETKTTHIMP 410

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224085091|ref|XP_002307487.1| predicted protein [Populus trichocarpa] gi|222856936|gb|EEE94483.1| predicted protein [Populus trichocarpa]

 Score =  419 bits (1077), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 225/416 (54%), Positives = 297/416 (71%), Gaps = 25/416 (6%)

Query: 1   MVRQELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILST 60
           M R EL I VP+LF CPISLDVM SPVSLCTGV+YDRSSIQHWL+SGHDTCPATMQ+LS+
Sbjct: 1   MGRDELCITVPSLFHCPISLDVMNSPVSLCTGVSYDRSSIQHWLDSGHDTCPATMQVLSS 60

Query: 61  KEFVPNLTLHRLIAHWSHQLTVP-----EQEVRVWIEKIKSENESENSCVDYLVKVAKFA 115
           K+FVPNLTL RLI  W+   + P     E++V  WIE+I   N     C+  +V+   FA
Sbjct: 61  KDFVPNLTLRRLINLWTSSNSSPSTADLEEKVMAWIEEIN--NAKPERCLGSIVE---FA 115

Query: 116 TGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLIL 175
           +  E NR  LAS+ GF+E + GVL+     +I VLES VR+L+LI+ ENGV EKL++LIL
Sbjct: 116 SRGEVNRSLLASFDGFLETIVGVLSINGM-QIRVLESVVRILSLILLENGVNEKLHKLIL 174

Query: 176 NTYN---CLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETEN-LLSALFDYLK 231
            + +   CLP F+ ILR G+L+SK+    +L+S++ +NESKR +   EN  L  +   +K
Sbjct: 175 KSSSNSSCLPSFISILRNGSLESKMACFTVLESVTTNNESKRFIAGVENNFLPVIIHLIK 234

Query: 232 LAED-QALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLS 290
           +  D Q L+D +LS LI +SV RS+K+QLV+LG+V++L+ ++S     I  VEKS+K+LS
Sbjct: 235 IDNDNQELHDVVLSFLIAVSVARSIKSQLVQLGIVEVLSNMMSSKNAAISVVEKSLKILS 294

Query: 291 IVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNS 350
           +V TC++G+ ALS +  CAG +VER+MKV KTA EDAVVV+WSMCC+++D +V E V  S
Sbjct: 295 MVCTCADGQSALSGDQKCAGAIVERLMKVSKTATEDAVVVLWSMCCLFRDEKVVEKVARS 354

Query: 351 NGLTKLLLVMQSE-NEG-IVRKMCGDLVKVL-------GKASGLGNYQTKTAHIMP 397
           NG+TK+LLVMQSE  EG  VR+MCGDL+KVL       G  SG  +Y+TKT HIMP
Sbjct: 355 NGVTKVLLVMQSEVGEGNYVRRMCGDLIKVLRFGCKNVGGFSGAVSYETKTTHIMP 410

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255570336|ref|XP_002526127.1| ubiquitin-protein ligase, putative [Ricinus communis] gi|223534504|gb|EEF36203.1| ubiquitin-protein ligase, putative [Ricinus communis]

 Score =  414 bits (1064), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 223/409 (54%), Positives = 295/409 (72%), Gaps = 29/409 (7%)

Query: 4   QELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEF 63
           +ELYI VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQ+LS+K+ 
Sbjct: 5   EELYITVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQVLSSKDI 64

Query: 64  VPNLTLHRLIAHWS--HQLTVP------EQEVRVWIEKIKSENESENSCVDYLVKVAKFA 115
           +PNLTLHRLI  W+  H  T P      E++VR+W E+IKS         + LVK+ +F 
Sbjct: 65  IPNLTLHRLINLWNDHHSSTPPPATILSEKQVRIWTEEIKSGR------FESLVKIVEFL 118

Query: 116 TGCEANRRFLASYGGFVEAVFGVLNRKRRS-EIAVLESAVRVLNLIVNENGVKEKLNRLI 174
              +A +RFLA    F+ ++   L +     +I V+E  +RVL+LI+ +NGVKEKL+RL+
Sbjct: 119 RCSDAKKRFLADCDLFIGSLVYTLAKDTGGVDIVVIELIIRVLDLILLQNGVKEKLHRLL 178

Query: 175 LNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAE 234
              +NCL  FL +++ GNL SKI SI++L+SISL N        T+ L+  L D L+  +
Sbjct: 179 --NHNCLSPFLLVIKNGNLTSKIESIRVLESISLSNYH-----HTQTLIPILLDLLE-TQ 230

Query: 235 DQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT 294
           + ++NDA+LS LI+++V RSVK QL +L +V+ +++ILS+    +  +EKS+K+LSIVAT
Sbjct: 231 NNSVNDAVLSFLISVTVTRSVKTQLAQLKLVETISKILSNQNATVSVIEKSMKLLSIVAT 290

Query: 295 CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLT 354
           C++GRLA+SE+  CAG +VER+MKV KTA ED V+V+WS+CC++KD RVKE VV S GLT
Sbjct: 291 CADGRLAISEDPMCAGCIVERLMKVSKTATEDGVMVLWSLCCLFKDERVKEKVVKSKGLT 350

Query: 355 KLLLVMQSENEG-IVRKMCGDLVKVLG---KASG--LGNYQTKTAHIMP 397
           K+LLVMQSE +G   RKMC +LVKVL    K +G  +  Y TKT HIMP
Sbjct: 351 KVLLVMQSEGDGNSARKMCVELVKVLRVAVKDNGGVVMCYDTKTTHIMP 399

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225463889|ref|XP_002264273.1| PREDICTED: U-box domain-containing protein 27-like [Vitis vinifera]

 Score =  339 bits (870), Expect = 1e-90,   Method: Compositional matrix adjust.
 Identities = 196/407 (48%), Positives = 264/407 (64%), Gaps = 16/407 (3%)

Query: 1   MVRQELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILST 60
           MVR +L+I +P+ F+CPISLDVMKSPVSLCTGVTYDRSSIQ WL++G++TCPATMQIL +
Sbjct: 1   MVRNDLFINIPSFFKCPISLDVMKSPVSLCTGVTYDRSSIQTWLDNGNNTCPATMQILPS 60

Query: 61  KEFVPNLTLHRLIAHWSHQLTVP-----EQEVRVWIEKIKSENESENSCVDYLVKVAKFA 115
           K+FVPN TL RLI  W+    VP      ++V  W+  I      EN     L K+  +A
Sbjct: 61  KDFVPNHTLQRLIQVWAQSSAVPSPVVSSRQVGAWVADI------ENRRFGALPKILDYA 114

Query: 116 TGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLIL 175
           +  + NRRF+AS  GFV  V GVL     + I +LE  VR+L+L++ E GVKE++  LIL
Sbjct: 115 SSSDENRRFVASLDGFVPVVAGVLGNA-GAGIEILELVVRILDLVMVEKGVKEQIQGLIL 173

Query: 176 NT-YNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAE 234
            +  + L   L IL +G+ DSKI S +IL++I++D ESKR + E E LLS L   L    
Sbjct: 174 KSNRDHLSAILLILEKGSSDSKIASARILEAIAIDPESKRSISEREGLLSVLLQLLSSQT 233

Query: 235 DQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT 294
           D +  D++LS LI ++V R  K QLV  G+VQ L + LS S   I T EKSIK+L  ++ 
Sbjct: 234 DSSSLDSVLSCLIAITVTRQTKTQLVRSGLVQTLAKTLSTSNYPISTTEKSIKLLLTISN 293

Query: 295 CSEGRLALSEEASCAGRVVERV-MKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGL 353
           C +G  A+ E+  C   VV+R+ MK+  +A EDAV V+WS+C + +D++ +EAV  S GL
Sbjct: 294 CRDGHQAICEDPICVAAVVQRMSMKLSSSAVEDAVTVLWSVCYLNRDSKAQEAVAKSTGL 353

Query: 354 TKLLLVMQSENEGIVRKMCGDLVKVL--GKASGLGNYQTKTAHIMPY 398
           TK+LL+MQ+     VR+MC DLVK+      S L +Y TKT HI PY
Sbjct: 354 TKILLLMQTNCSANVRRMCCDLVKIFRVNSKSCLASYDTKTTHITPY 400

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147805215|emb|CAN66628.1| hypothetical protein VITISV_025009 [Vitis vinifera]

 Score =  338 bits (866), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 195/407 (47%), Positives = 263/407 (64%), Gaps = 16/407 (3%)

Query: 1   MVRQELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILST 60
           MVR +L+I +P+ F+CPISLDVMKSPVSLCTGVTYDRSSIQ WL++G++TCPATMQ L +
Sbjct: 1   MVRNDLFINIPSFFKCPISLDVMKSPVSLCTGVTYDRSSIQTWLDNGNNTCPATMQXLPS 60

Query: 61  KEFVPNLTLHRLIAHWSHQLTVP-----EQEVRVWIEKIKSENESENSCVDYLVKVAKFA 115
           K+FVPN TL RLI  W+    VP      ++V  W+  I      EN     L K+  +A
Sbjct: 61  KDFVPNHTLQRLIQVWAQSSAVPSPVVSSRQVGAWVADI------ENRRFGALPKILDYA 114

Query: 116 TGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLIL 175
           +  + NRRF+AS  GFV  V GVL     + I +LE  VR+L+L++ E GVKE++  LIL
Sbjct: 115 SSSDENRRFVASLDGFVPVVAGVLGNA-GAXIEILELVVRILDLVMVEKGVKEQIQGLIL 173

Query: 176 NT-YNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAE 234
            +  + L   L IL +G+ DSKI S +IL++I++D ESKR + E E LLS L   L    
Sbjct: 174 KSNRDHLSAILLILEKGSSDSKIASARILEAIAIDPESKRSISEREGLLSVLLQLLSSQT 233

Query: 235 DQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT 294
           D +  D++LS LI ++V R  K QLV  G+VQ L + LS S   I T EKSIK+L  ++ 
Sbjct: 234 DSSSLDSVLSCLIAITVTRQTKTQLVRSGLVQTLAKTLSTSNYPISTTEKSIKLLLTISN 293

Query: 295 CSEGRLALSEEASCAGRVVERV-MKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGL 353
           C +G  A+ E+  C   VV+R+ MK+  +A EDAV V+WS+C + +D++ +EAV  S GL
Sbjct: 294 CRDGHQAICEDPICVAAVVQRMSMKLSSSAVEDAVTVLWSVCYLNRDSKAQEAVAKSTGL 353

Query: 354 TKLLLVMQSENEGIVRKMCGDLVKVL--GKASGLGNYQTKTAHIMPY 398
           TK+LL+MQ+     VR+MC DLVK+      S L +Y TKT HI PY
Sbjct: 354 TKILLLMQTNCSANVRRMCCDLVKIFRVNSKSCLASYDTKTTHITPY 400

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|13539578|emb|CAC35703.1| photoperiod responsive protein [Solanum tuberosum subsp. andigenum]

 Score =  333 bits (854), Expect = 8e-89,   Method: Compositional matrix adjust.
 Identities = 197/419 (47%), Positives = 263/419 (62%), Gaps = 29/419 (6%)

Query: 3   RQELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKE 62
           R+ELY+ VP+LFRCPIS+DVMKSPVSLCTGVTYDRSSIQ WL  GH+TCPATMQIL + +
Sbjct: 6   REELYVTVPSLFRCPISMDVMKSPVSLCTGVTYDRSSIQTWLSQGHNTCPATMQILPSTD 65

Query: 63  FVPNLTLHRLIAHW-SHQ------LTVP------EQEVRVWIEKIKSENESENSCVDYLV 109
           F+PNLTL RLI  W  HQ       T P      + EV   +E +K+ N  E   +  L 
Sbjct: 66  FIPNLTLRRLINVWIQHQPSSSPGYTTPSSSSVTKSEV---VEIVKNLN-GEVDRLSSLA 121

Query: 110 KVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEK 169
           K+ +F      NRRF  +    + +V GVL      E  V E+ V VL+L+V+ENGVKE+
Sbjct: 122 KIVEFVKCSGENRRFFVNSSDAIVSVVGVLVDCDVGE--VCEAVVAVLDLVVSENGVKEQ 179

Query: 170 LNRLILNT-YNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFD 228
           LN+ IL +    LP FL ILR+G L S+I + +IL+ I+LD +S+R+++E + LL  L  
Sbjct: 180 LNKEILKSDRKFLPKFLLILRKGKLSSRIQTARILEFIALDADSQRKMIEEQGLLYELHV 239

Query: 229 YLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKM 288
           +     ++   +A LS LI +S  R  K +LV  G+VQ + +ILS S T    VEKS+K+
Sbjct: 240 FTSTETNRFAIEAGLSTLIAVSTTRPAKKELVRFGIVQTIGKILSGSETARAVVEKSLKL 299

Query: 289 LSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVV 348
           L  VATC+EGR A+ +   C   +V R+MK  K A E  V V+WS+CC+++D   ++ V 
Sbjct: 300 LETVATCTEGRAAIVKGEECMSAIVTRLMKSSKAATEHGVTVLWSVCCLFRDTAARDVVG 359

Query: 349 NSNGLTKLLLVMQSENEGIVRKMCGDLVKVLG---------KASGLGNYQTKTAHIMPY 398
            +NGLTK+LLVMQS+    VR+MCG+LVK L            S L +Y TKT HIMPY
Sbjct: 360 KANGLTKVLLVMQSDCSAAVRQMCGELVKALRVVNNKHKNYSKSCLASYDTKTTHIMPY 418

Source: Solanum tuberosum subsp. andigenum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225431543|ref|XP_002281970.1| PREDICTED: U-box domain-containing protein 27 [Vitis vinifera]

 Score =  329 bits (844), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 173/416 (41%), Positives = 267/416 (64%), Gaps = 22/416 (5%)

Query: 1   MVRQELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILST 60
           MVR  L+I VP+LFRCPISLDVMKSPVSLCTGVTYDRSSIQ WL++G++TCPATMQ+L +
Sbjct: 1   MVRDNLFITVPSLFRCPISLDVMKSPVSLCTGVTYDRSSIQRWLDNGNNTCPATMQVLHS 60

Query: 61  KEFVPNLTLHRLIAHWS----HQLTVPEQEV-----------RVWIEKIKSENESENSCV 105
           K+FVPN TL RLI  WS    H+   P+  +           R  I++I+S+ E    C+
Sbjct: 61  KDFVPNHTLQRLIQIWSNSVRHRSNSPDSPIQLVPSLSPDQARDLIKEIESKPED---CL 117

Query: 106 DYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG 165
           + + K+  FA   E +R+FLA   GFV  +   L     + +A LE  VRVL++I++E+ 
Sbjct: 118 ECMSKIICFARESEESRKFLARIDGFVSLLVDFLGSGNANFLA-LEQVVRVLDMIISEHE 176

Query: 166 VKEKL-NRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLS 224
             ++L N ++ +  +CL   L +L++G+ +S+I S ++L+SI++D ESK  + E + L S
Sbjct: 177 DHKQLANSMLKSDRDCLSSILLVLQQGSAESRIASARVLESIAIDAESKLLIAEKDGLFS 236

Query: 225 ALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEK 284
            L   +    D  + ++ LS LI +S+ R ++ ++V LG+V+ LT++LSD    +   EK
Sbjct: 237 ELIRIMSTETDPTMIESTLSCLIAVSMPRRIRPKIVRLGVVKQLTKLLSDPNWSVSVTEK 296

Query: 285 SIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVK 344
           ++K+L + ++C EG+  + E + C   +V++++KV  TA E AV ++WS+C + +D R +
Sbjct: 297 ALKLLEMASSCKEGKSEICENSDCVSAIVQKMLKVSSTATEHAVTILWSVCYLSRDDRAQ 356

Query: 345 EAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVL--GKASGLGNYQTKTAHIMPY 398
             V  +NGLTK+L++MQS     VR++ GDL+K+      S L +Y TKT HIMP+
Sbjct: 357 STVTQNNGLTKILVLMQSNCSPAVRQLAGDLLKIFRVSSKSCLSSYDTKTTHIMPF 412

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224131194|ref|XP_002328478.1| predicted protein [Populus trichocarpa] gi|222838193|gb|EEE76558.1| predicted protein [Populus trichocarpa]

 Score =  327 bits (837), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 182/410 (44%), Positives = 267/410 (65%), Gaps = 15/410 (3%)

Query: 1   MVRQ-ELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILS 59
           MVR   LY+ VPNLFRCPISLDVMKSPVSLCTGVTYDR+SIQ WL+SG++TCPATMQ+L+
Sbjct: 1   MVRDVNLYVTVPNLFRCPISLDVMKSPVSLCTGVTYDRTSIQRWLDSGNNTCPATMQVLN 60

Query: 60  TKEFVPNLTLHRLIAHWSHQLTVPEQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCE 119
           +KEFVPN TL RLI  WS  +   + ++R  +E +  E  ++   VD+L K   FA   E
Sbjct: 61  SKEFVPNRTLQRLIQIWSDSVQT-QNDLREEVEVLVKEMRAQKGKVDHLSKFICFAKESE 119

Query: 120 ANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLIL---- 175
            N  FLA + GFVE + G L+  +  +I  LE  VRV  +I+ + G  + L  LIL    
Sbjct: 120 ENCEFLAKFDGFVEMLVGFLDGDK--DIDFLERVVRVFAMILKKVGDYKALRLLILKQNN 177

Query: 176 -NTYNCLPLFLEILREG-NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLA 233
             +++CL   L +L++G +++S++G IKI+++I+LD ESK+ + E E  L  L   + L 
Sbjct: 178 GGSHDCLSSLLLVLKQGRSVNSRVGVIKIIEAITLDAESKQMLSEKEGFLLELVKLISLE 237

Query: 234 EDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSR-TQILTVEKSIKMLSIV 292
           +D +L +A LS L  +S+ + VK +L+ L ++  L ++L+  +   +  +EK++K+L +V
Sbjct: 238 KDPSLIEASLSCLTAISMSKRVKIKLINLKIIAELRKLLTGGQNASVSIIEKALKLLEMV 297

Query: 293 ATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNG 352
           A+  EGR     +A+C   V+ +V+KV   A E AV+++WS C +++D   K+AVV SNG
Sbjct: 298 ASFREGRAEFCNDAACVEAVMNKVLKVSSEATEHAVMILWSACYLFRDRVAKDAVVKSNG 357

Query: 353 LTKLLLVMQSENEGIVRKMCGDLVKVLGKASG----LGNYQTKTAHIMPY 398
           LTK+LL+MQS     VR+M GDL+K+    S     L +Y+TKT HIMP+
Sbjct: 358 LTKILLLMQSNCSPGVRQMSGDLLKIFRVNSKSDYCLSSYETKTTHIMPF 407

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356561458|ref|XP_003548998.1| PREDICTED: U-box domain-containing protein 28-like [Glycine max]

 Score =  317 bits (811), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 184/414 (44%), Positives = 263/414 (63%), Gaps = 27/414 (6%)

Query: 4   QELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEF 63
           Q+LY+ VP+LFRCPIS+DVM+SPVSLCTGVTYDR+SIQHWL+SGHDTCPATMQ+L +K+F
Sbjct: 7   QKLYVTVPSLFRCPISMDVMRSPVSLCTGVTYDRASIQHWLDSGHDTCPATMQVLPSKDF 66

Query: 64  VPNLTLHRLIAHW-----------SHQLTVPEQEVRVWIEKIKSENESENSCVDYLVKVA 112
           +PNLTLHRLI  W               +     +R  + +I++   S+++    L K+A
Sbjct: 67  IPNLTLHRLIRLWLLSSSSSSSAEPPSPSSSADHLRPLLRQIQT---SDDNVPGILSKIA 123

Query: 113 KFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG--VKEKL 170
           +FA     NRR LA++ GF  AV   L     S I V E+A+ +L  +  ENG    E++
Sbjct: 124 EFAKKSGENRRSLAAFPGFDSAVVRALA-GSNSLIDVAENAIYLLGSVFRENGKSTGERI 182

Query: 171 NRLILNTY-NCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDY 229
            +LIL+    C    + +LR G+L SKI ++K+L+ ++ D +S + + E   LLS L  +
Sbjct: 183 RKLILDAREQCFDAMIFVLRNGSLKSKIETVKVLEFLACDFQSSKSISEACGLLSLLASF 242

Query: 230 LKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKML 289
           LK   ++ +NDA+LS+L  +SV  S K +LV  G+V+++T++L        T E+ ++ML
Sbjct: 243 LKDGGEE-INDAVLSLLGVVSVTHSAKVELVSSGVVEVVTKLLRACSAA--TAERCLRML 299

Query: 290 SIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVN 349
           +++ATC+EGR A++EE SCA  VVER+ K  K A  DAV V+WS+CC+ ++ +V++ V  
Sbjct: 300 AVLATCAEGRAAMAEEPSCAAAVVERITKASKAAAADAVAVLWSLCCLCRNVKVRDEVAK 359

Query: 350 SNGLTKLLLVMQSENEGIVRKMCGDLVKVLGKASG------LGNYQTKTAHIMP 397
            NG+  +LLVMQ   E  VR MC DL+KVL  A        LG Y TKT HI P
Sbjct: 360 RNGVVVVLLVMQRGWEEHVRSMCVDLIKVLKGACKNGLGLELGCYDTKTTHIKP 413

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093334|ref|XP_002309886.1| photoperiod-response-like protein [Populus trichocarpa] gi|224093344|ref|XP_002309891.1| photoperiod-response-like protein [Populus trichocarpa] gi|222852789|gb|EEE90336.1| photoperiod-response-like protein [Populus trichocarpa] gi|222852794|gb|EEE90341.1| photoperiod-response-like protein [Populus trichocarpa]

 Score =  315 bits (808), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 178/416 (42%), Positives = 258/416 (62%), Gaps = 20/416 (4%)

Query: 1   MVRQ-ELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILS 59
           MVR  +LY+ VP+ FRCPISLDVMKSPVSLCTGVTYDR+SI+ WL+SG++TCPATMQ+L+
Sbjct: 1   MVRDVDLYVTVPSFFRCPISLDVMKSPVSLCTGVTYDRTSIERWLDSGNNTCPATMQVLN 60

Query: 60  TKEFVPNLTLHRLIAHWSHQLTVPEQE----------VRVWIEKIKSENESENSCVDYLV 109
           +KEFVPN TL RLI  WS  +   +             R  IE +  E  ++    D L 
Sbjct: 61  SKEFVPNRTLQRLIKIWSDSVQTQKDNRVDSAASSVVTREDIEVLVKEMRAKKDKTDRLS 120

Query: 110 KVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEK 169
           K   FA   E N  FLA + GFVE + G L   +  +I  LE  V+V  LI+N+ G  + 
Sbjct: 121 KFICFAKESEENCEFLAKFDGFVEMLVGFLVGDK--DINFLERVVKVFVLILNKVGDYKA 178

Query: 170 LNRLILNTYN-CLPLFLEILREG-NLDSKIGSIKILDSISLDNESKRRVLETENLLSALF 227
           L  LIL   N CL   L +L++G ++ S+IG++KI+++I+LD ESK+ V E E  L  L 
Sbjct: 179 LRLLILKQNNDCLSALLAVLKQGRSVSSQIGALKIIEAITLDAESKQMVSEKEGFLLELV 238

Query: 228 DYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDS-RTQILTVEKSI 286
             + L  D  L +A LS LI +S+ + VK  L+   ++  L ++L+   +  +  +EK++
Sbjct: 239 KLISLENDPRLIEASLSCLIAISMSKRVKTNLINFKVIAELRKLLTGGQKASVSIIEKAL 298

Query: 287 KMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEA 346
           K+L +V +  EGR     + +C   V+ +V+KV   A E AV+++WS+C +++D   ++A
Sbjct: 299 KLLEMVTSLREGRAEFCNDTACVEAVMNKVLKVSSEATEHAVMILWSVCYLFRDGDAQDA 358

Query: 347 VVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVL----GKASGLGNYQTKTAHIMPY 398
           +V SNGLTK+LL+MQS    +VR+M GDL+K+       +S L +Y TKT HIMP+
Sbjct: 359 LVKSNGLTKILLLMQSNCSPVVRQMSGDLLKIFRVNSKFSSCLSSYDTKTTHIMPF 414

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	398
TAIR|locus:2093974	415	PUB29 "plant U-box 29" [Arabid	0.979	0.939	0.399	1.6e-72
TAIR|locus:2144846	409	AT5G09800 [Arabidopsis thalian	0.994	0.968	0.399	4.8e-71
TAIR|locus:2174814	420	CMPG2 ""CYS, MET, PRO, and GLY	0.736	0.697	0.332	4.3e-38
TAIR|locus:2013850	431	CMPG1 ""CYS, MET, PRO, and GLY	0.929	0.858	0.248	1.6e-29
TAIR|locus:2082682	632	PUB14 "plant U-box 14" [Arabid	0.798	0.503	0.291	2.6e-29
TAIR|locus:2152049	444	AT5G65920 [Arabidopsis thalian	0.175	0.157	0.542	6.6e-28
TAIR|locus:2097390	448	AT3G49810 [Arabidopsis thalian	0.175	0.156	0.528	3.7e-26
TAIR|locus:2017719	612	AT1G23030 [Arabidopsis thalian	0.894	0.581	0.258	9.4e-26
TAIR|locus:2039265	411	PUB23 "plant U-box 23" [Arabid	0.909	0.880	0.243	2.2e-25
UNIPROTKB|Q5VRH9	611	PUB12 "U-box domain-containing	0.788	0.513	0.274	7e-25

TAIR|locus:2093974 PUB29 "plant U-box 29" [Arabidopsis thaliana (taxid:3702)]

 Score = 733 (263.1 bits), Expect = 1.6e-72, P = 1.6e-72
 Identities = 165/413 (39%), Positives = 257/413 (62%)

Query:     5 ELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFV 64
             E YI VP+ F+CPISLDVM+SPVSLCTGVTYDR+SIQ WL+ G++TCPATMQ+L TK+FV
Sbjct:     7 ETYITVPSFFKCPISLDVMRSPVSLCTGVTYDRASIQRWLDGGNNTCPATMQLLKTKDFV 66

Query:    65 PNLTLHRLIAHWS------HQ----LTVPEQEVRVWXXXXXXXXXXXXXCVDYLVKVAKF 114
             PNLTL RLI  WS      H     +  P     V               ++ L+K+ +F
Sbjct:    67 PNLTLQRLINIWSDSIGRRHNGDSPVLNPPSGREVPTKEEVNVLLERLMSLENLMKIVRF 126

Query:   115 ATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLI 174
                 ++NR FL+    FV  +  ++ R ++++I ++  A+R+L+ I  +   +E+L+ L+
Sbjct:   127 VKDSDSNREFLSKKMEFVPMLVDII-RTKKTKIELVIMAIRILDSIKVD---RERLSNLM 182

Query:   175 L--NTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKL 232
             L  +  +CL   L  ++ GNL+SKI S+++LD IS D +SK  + E + +L+ +   + +
Sbjct:   183 LANDGGDCLTAILLAIQRGNLESKIESVRVLDWISFDAKSKLMIAERDGVLTEMMKSISI 242

Query:   233 AE--DQALNDAILSILITLSVYRSVKAQLVEL-GMVQILTRILSDSRTQILTVEKSIKML 289
              E  D +L +A LS LIT+S  + V+++L+    + +I   +L+++ T +   EKS+K+L
Sbjct:   243 TESSDPSLIEASLSFLITISKSKRVRSKLIAAKAITKIKDILLTETLTNVAVTEKSLKLL 302

Query:   290 SIVATCSEGRLAL--SEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYK-DARVKEA 346
               +++  EGRL +   +   C   VV++++KV  TA E AV ++W +C V++ D  V+E 
Sbjct:   303 ETLSSKREGRLEICGDDNGRCVEGVVKKLLKVSTTATEHAVTILWCLCYVFREDKTVEET 362

Query:   347 VVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLG-KASGLGNYQTKTAHIMPY 398
             V  SNG+TKLL+V+QS    +VR+M  DL+KVL   +S L  Y+TKT HIMP+
Sbjct:   363 VERSNGVTKLLVVIQSNCSAMVRQMAKDLIKVLKFNSSALAAYETKTTHIMPF 415

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0010200 "response to chitin" evidence=IEP

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2144846 AT5G09800 [Arabidopsis thaliana (taxid:3702)]

 Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
 Identities = 164/411 (39%), Positives = 241/411 (58%)

Query:     1 MVRQELYIA-VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILS 59
             M   +LYI  VP  F+CPISLDVMKSPVSL TGVTYDR SIQ WL+ G++TCPATMQIL 
Sbjct:     1 MRSDDLYITTVPCFFKCPISLDVMKSPVSLSTGVTYDRVSIQRWLDDGNNTCPATMQILQ 60

Query:    60 TKEFVPNLTLHRLIAHWSHQLT------VPEQEVRVWXXXXXXXXXXXXXCVDYLVKVAK 113
              KEFVPNLTLHRLI HWS  +        PE +                   D   K+ +
Sbjct:    61 NKEFVPNLTLHRLIDHWSDSINRRADSESPESDTPTRDEINAAIERFRIEN-DARSKILR 119

Query:   114 FATGCEANRRFLASYGGFVEAVFGVLNRKRR---SEIAVLESAVRVLNLIVNENGVKEKL 170
             FA   + NR FLA    FV  +  +++  R    S++ ++  AV++L++I  +   + +L
Sbjct:   120 FARESDENREFLAGKDDFVAMLVDLISDSRNFSDSQLLLVGEAVKILSMIRRKIFDRRRL 179

Query:   171 NRLIL-NTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDY 229
             + LIL N  +CL  F  +++ GN   KI    +L+ I++D ESK  + + E L++ +   
Sbjct:   180 SNLILTNGGDCLTSFFLLIKRGNPKLKIDCSAVLEFIAVDAESKLIIAKGEGLVTEIIKL 239

Query:   230 LKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKML 289
             +    D +L +A LS+LI ++  + VK  L+   +V  LT +L+D  T +   EK +K+L
Sbjct:   240 ISSDSDSSLIEANLSLLIAIASSKRVKLALIREKLVTKLTSLLTDPTTSVSVTEKCLKLL 299

Query:   290 SIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVN 349
               +++C EGR  + +   C   VV ++MKV   A E AV V+WS+C ++K+ + ++AV+ 
Sbjct:   300 EAISSCKEGRSEICDGV-CVETVVNKLMKVSTAATEHAVTVLWSVCYLFKEKKAQDAVIR 358

Query:   350 SNGLTKLLLVMQSENEGIVRKMCGDLVKV--LGKASGLGNYQTKTAHIMPY 398
              NG+TK+LL++QS     VR M  DL+KV  +   S L  Y+TKT HIMP+
Sbjct:   359 INGVTKILLLLQSNCSLTVRHMLTDLLKVFKVNSRSCLSVYETKTTHIMPF 409

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2174814 CMPG2 ""CYS, MET, PRO, and GLY protein 2"" [Arabidopsis thaliana (taxid:3702)]

 Score = 408 (148.7 bits), Expect = 4.3e-38, P = 4.3e-38
 Identities = 101/304 (33%), Positives = 177/304 (58%)

Query:   106 DYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNR-----KRRSEIAVLESAVRVLNLI 160
             + L K+ +F    + NR FLA    FV+ +  ++N+        ++  V++ AV++L+ I
Sbjct:   117 EVLSKIVRFGRESDDNRGFLAGKDDFVKLLVDLINQVDFETTSAAKSLVVQEAVKILSTI 176

Query:   161 VNENGVKEKLNRLIL-NTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLET 219
              ++   + + + LIL N  + L + + + + GN++ KI    +L+ I++D ESK  + E 
Sbjct:   177 RSKVSDRRRFSNLILTNGRDRLSVIVYLFKTGNVELKIDCAGLLEFIAVDAESKLLIAER 236

Query:   220 ENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQI 279
             + L++ L   +    D +L ++ LS LI +S  + VK  L+   ++  +T++LSDS + +
Sbjct:   237 DGLITELMKSISKDSDLSLIESSLSCLIAISSPKRVKLNLLREKLIGDVTKLLSDSTSSL 296

Query:   280 -LTV-EKSIKMLSIVATCSEGRLAL-SEEASCAGRVVERVMKVGKTAREDAVVVIWSMCC 336
              ++V EK +K+L I+A+  EGR  +   +  C   VV+++MKV   A E AV V+WS+  
Sbjct:   297 SVSVTEKCLKLLEILASTKEGRSEICGGDGECLKTVVKKLMKVSTAATEHAVTVLWSVSY 356

Query:   337 VYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKV--LGKASGLGNYQTKTAH 394
             ++K+ +  EAV + NG+TK+LL++QS     VR+M  DL+KV  +   S L  Y TKT H
Sbjct:   357 LFKEDKALEAVTSVNGVTKILLLLQSNCSPAVRRMLTDLLKVFKVNSRSCLSAYDTKTTH 416

Query:   395 IMPY 398
             IMP+
Sbjct:   417 IMPF 420

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2013850 CMPG1 ""CYS, MET, PRO, and GLY protein 1"" [Arabidopsis thaliana (taxid:3702)]

 Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
 Identities = 100/402 (24%), Positives = 193/402 (48%)

Query:     4 QELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEF 63
             +E+ I +P+ F+CPIS ++MK PV + +G+TYDR +I+ W ESG+ TCP T  +L++ E 
Sbjct:    27 EEVEITIPSQFQCPISYELMKDPVIIASGITYDRENIEKWFESGYQTCPVTNTVLTSLEQ 86

Query:    64 VPNLTLHRLIAHW-SHQL-----TVPEQEVRVWXX---------XXXXXXXXXXXCVDYL 108
             +PN T+ R+I  W    L      +P   V V                       C++ +
Sbjct:    87 IPNHTIRRMIQGWCGSSLGGGIERIPTPRVPVTSHQVSEICERLSAATRRGDYAACMEMV 146

Query:   109 VKVAKFATGCEANRRFLASYG-GFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVK 167
              K+ +     E NR+ +   G G V  V      +  +   +LE  V VL  ++   G++
Sbjct:   147 TKMTRLGKESERNRKCVKENGAGLVLCVCFDAFSENANASLLLEETVSVLTWML-PIGLE 205

Query:   168 EKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALF 227
              +      +++N L   +E+LR G+ ++   +  I + + L N +    L   N +   F
Sbjct:   206 GQSKLTTTSSFNRL---VELLRNGDQNA---AFLIKELLEL-NVTHVHALTKINGVQEAF 258

Query:   228 DYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIK 287
                 +  D    ++++SI   +   +   ++ +EL +V I   +L DS   +   EK++ 
Sbjct:   259 -MKSINRDSTCVNSLISIHHMILTNQETVSRFLELDLVNITVEMLVDSENSVC--EKALT 315

Query:   288 MLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAV 347
             +L+++    EGR  +         +V++++K+ +  ++D V V+W +C     + V+EA+
Sbjct:   316 VLNVICETKEGREKVRRNKLVIPILVKKILKISE--KKDLVSVMWKVCKSGDGSEVEEAL 373

Query:   348 VNSNGLTKLLLVMQSE-NEGIVRKMCGDLVKVLGKASGLGNY 388
                    KL++++Q    EG   K+  +L+K++ K   +  +
Sbjct:   374 -RLGAFKKLVVMLQVGCGEGTKEKVT-ELLKMMNKVMKMNGF 413

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0015824 "proline transport" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2082682 PUB14 "plant U-box 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 332 (121.9 bits), Expect = 2.6e-29, P = 2.6e-29
 Identities = 99/340 (29%), Positives = 169/340 (49%)

Query:    10 VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTL 69
             +P  FRCPISL++MK PV + TG TY+RSSIQ WL++GH TCP + + L      PN  L
Sbjct:   248 IPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 307

Query:    70 HRLIAHW--SHQLTVPEQEVRVWXXXXXXXXXXXXXCVDYLVKVAKFATGCEANRRFLAS 127
               LIA W  S+ + +P+ +                     L  + K A G    +R  A 
Sbjct:   308 KSLIALWCESNGIELPQNQGSCRTTKIGGSSSSDCDRTFVLSLLEKLANGTTEQQRAAAG 367

Query:   128 YGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLI---VNENGVKEKLNRLILNTYN----- 179
                 + A   V NR   +E   +   V +L+       E+ V   LN L +N  N     
Sbjct:   368 ELRLL-AKRNVDNRVCIAEAGAIPLLVELLSSPDPRTQEHSVTALLN-LSINEGNKGAIV 425

Query:   180 ---CLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQ 236
                 +   +E+L+ G+++++  +   L S+S+ +E+K  +      + AL   L+    +
Sbjct:   426 DAGAITDIVEVLKNGSMEARENAAATLFSLSVIDENKVAI-GAAGAIQALISLLEEGTRR 484

Query:   237 ALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCS 296
                DA  +I   L +Y+  K++ V+ G+V  LTR+L D+   +  V++++ +L+I++T  
Sbjct:   485 GKKDAATAIF-NLCIYQGNKSRAVKGGIVDPLTRLLKDAGGGM--VDEALAILAILSTNQ 541

Query:   297 EGRLALSEEASCAGRVVERVMKVGKTA-REDAVVVIWSMC 335
             EG+ A++E  S    V+  +++ G    RE+A  ++W +C
Sbjct:   542 EGKTAIAEAESIP--VLVEIIRTGSPRNRENAAAILWYLC 579

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;ISS

GO:0019894 "kinesin binding" evidence=IEA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0046777 "protein autophosphorylation" evidence=RCA

TAIR|locus:2152049 AT5G65920 [Arabidopsis thaliana (taxid:3702)]

 Score = 202 (76.2 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
 Identities = 38/70 (54%), Positives = 47/70 (67%)

Query:    10 VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTL 69
             +P++F CPISL+ M+ PV+LCTG TY+RS+I  W   GH TCP TMQ L      PN TL
Sbjct:    60 IPSVFICPISLEPMQDPVTLCTGQTYERSNILKWFNIGHCTCPTTMQELWDDLVTPNKTL 119

Query:    70 HRLIAHWSHQ 79
             H+LI  W  Q
Sbjct:   120 HQLIYTWFSQ 129

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2097390 AT3G49810 [Arabidopsis thaliana (taxid:3702)]

 Score = 198 (74.8 bits), Expect = 3.7e-26, Sum P(2) = 3.7e-26
 Identities = 37/70 (52%), Positives = 45/70 (64%)

Query:    10 VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTL 69
             +P++F CPISL+ M+ PV+LCTG TY+R +I  W   GH TCP TMQ L      PN TL
Sbjct:    64 IPSVFICPISLEPMQDPVTLCTGQTYERLNIHKWFNLGHLTCPTTMQELWDDTVTPNKTL 123

Query:    70 HRLIAHWSHQ 79
             H LI  W  Q
Sbjct:   124 HHLIYTWFSQ 133

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA

TAIR|locus:2017719 AT1G23030 [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 9.4e-26, P = 9.4e-26
 Identities = 101/391 (25%), Positives = 184/391 (47%)

Query:     8 IAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNL 67
             + +P  F CP+SL++MK PV + TG TY+R+ IQ W++ G+ TCP T Q L      PN 
Sbjct:   239 LTIPVDFLCPVSLELMKDPVIVATGQTYERAYIQRWIDCGNLTCPKTQQKLENFTLTPNY 298

Query:    68 TLHRLIAHW--SHQLTVP----------EQEVRVWXXXXXXXXXXXXXCVDYLVKVAKFA 115
              L  LI+ W   H +  P            ++ V                   V   +  
Sbjct:   299 VLRSLISRWCAEHNIEQPAGYINGRTKNSGDMSVIRALVQRLSSRSTEDRRNAVSEIRSL 358

Query:   116 TGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVR-VLNLIVNENGVKEKLNRLI 174
             +    + R L +  G +  +  +L  +   ++A  E+A+  VLNL + EN  KE    LI
Sbjct:   359 SKRSTDNRILIAEAGAIPVLVNLLTSE---DVATQENAITCVLNLSIYENN-KE----LI 410

Query:   175 LNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAE 234
             +     +   +++LR G ++++  +   L S+SL +E+K  ++     + AL D L+   
Sbjct:   411 MFA-GAVTSIVQVLRAGTMEARENAAATLFSLSLADENKI-IIGGSGAIPALVDLLENGT 468

Query:   235 DQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT 294
              +   DA  + L  L +Y   K + V  G+V  L ++LSDS T+   V++++ +LS++A 
Sbjct:   469 PRGKKDAATA-LFNLCIYHGNKGRAVRAGIVTALVKMLSDS-TRHRMVDEALTILSVLAN 526

Query:   295 CSEGRLALSEEASCAGRVVERVMKVGKTA-REDAVVVIWSMCCVYKDARVKEAVVNSNGL 353
               + + A+ +  +    +   +++  +T  RE+A  ++ S+C      R  E ++    L
Sbjct:   527 NQDAKSAIVKANTLPALI--GILQTDQTRNRENAAAILLSLC-----KRDTEKLITIGRL 579

Query:   354 TKLLLVMQSENEGIVR--KMCGDLVKVLGKA 382
               ++ +M     G  R  +    L+++L KA
Sbjct:   580 GAVVPLMDLSKNGTERGKRKAISLLELLRKA 610

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0010200 "response to chitin" evidence=IEP

TAIR|locus:2039265 PUB23 "plant U-box 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 288 (106.4 bits), Expect = 2.2e-25, P = 2.2e-25
 Identities = 95/390 (24%), Positives = 186/390 (47%)

Query:     8 IAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGH-DTCPATMQILSTKEFVPN 66
             I +P  F CPISL++MK PV + TG+TYDR SI+ WL +G  ++CP T Q ++  +  PN
Sbjct:    10 IEIPPFFLCPISLEIMKDPVIVSTGITYDRDSIEKWLFAGKKNSCPVTKQDITDADLTPN 69

Query:    67 LTLHRLIAHWS--------HQLTVP-----EQEVRVWXXXXXXXXXXXXXCVDYLVK-VA 112
              TL RLI  W          ++  P     + E+                C+  L + V+
Sbjct:    70 HTLRRLIQSWCTLNASYGVERIPTPRPPICKSEIEKLIRDSASSHENQVKCLKRLRQIVS 129

Query:   113 KFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVL-NLIVNENGVKEKLN 171
             + AT    N+R L +  G  E +  +++    +  ++ + A+ +L +L  +E  +K  LN
Sbjct:   130 ENAT----NKRCLEA-AGVPEFLANIVSNDSENG-SLTDEALNLLYHLETSETVLKNLLN 183

Query:   172 RLILNTYNCLPLFLEILREGNLDSKIGSIKILDSI-SLDNESKRRVLETENLLSALFDYL 230
                 N  N +    +I++ G  +S++ +  +L +I  + +  +   L+ E + + +   L
Sbjct:   184 NKKDN--NIVKSLTKIMQRGMYESRVYATLLLKNILEVADPMQSMTLKPE-VFTEVVQIL 240

Query:   231 KLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSR--TQILTVEKSIKM 288
                  Q    A + IL+ +  +   + + VE G++ ++  +L D    ++    E ++ +
Sbjct:   241 DDRISQKATKAAMHILVNICPWGRNRHKAVEAGVISVIIELLMDESFTSERRGPEMAMVV 300

Query:   289 LSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVV 348
             L ++  C+EGR       +    V +++++V +TA + AV V+ S+        +   ++
Sbjct:   301 LDLLCQCAEGRAEFLNHGAAIAVVCKKILRVSQTASDRAVRVLLSVGRFCATPALLHEML 360

Query:   349 NSNGLTKLLLVMQSENEGIVRKMCGDLVKV 378
                 + KL LV+Q    G  ++   +L+K+
Sbjct:   361 QLGVVAKLCLVLQVSCGGKTKEKAKELLKL 390

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IGI;IDA

GO:0005737 "cytoplasm" evidence=ISM

GO:0016567 "protein ubiquitination" evidence=IEA;IDA

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005829 "cytosol" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0002679 "respiratory burst involved in defense response" evidence=IGI;RCA

GO:0006952 "defense response" evidence=IGI

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

UNIPROTKB|Q5VRH9 PUB12 "U-box domain-containing protein 12" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 291 (107.5 bits), Expect = 7.0e-25, P = 7.0e-25
 Identities = 94/342 (27%), Positives = 165/342 (48%)

Query:    10 VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTL 69
             +P+ FRCPISL++M+ PV + +G TY+RS IQ WL+SGH TCP T Q LS     PN  L
Sbjct:   228 IPDEFRCPISLELMQDPVIVSSGQTYERSCIQKWLDSGHKTCPKTQQPLSHTSLTPNFVL 287

Query:    70 HRLIAHW--SHQLTVPEQEVRVWXXXXXXXXXXXXXCVDYLVKVAKFATGCEANR----- 122
               LI+ W  ++ + +P+ +                  +  L+   +     E        
Sbjct:   288 KSLISQWCEANGIELPKNKQNSRDKKAAKSSDYDHAGLVSLMNRLRSGNQDEQRAAAGEI 347

Query:   123 RFLASYGG-----FVEA--VFGVLNRKRRSEIAVLESAVR-VLNLIVNENGVKEKLNRLI 174
             R LA           EA  +  ++N    S+    E AV  +LNL ++EN      N+  
Sbjct:   348 RLLAKRNVNNRICIAEAGAIPLLVNLLSSSDPRTQEHAVTALLNLSIHEN------NKAS 401

Query:   175 LNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAE 234
             +   + +P  +E+L+ G+++++  +   L S+S+ +E+K  +      +  L + L    
Sbjct:   402 IVDSHAIPKIVEVLKTGSMETRENAAATLFSLSVVDENKVTI-GAAGAIPPLINLLCDGS 460

Query:   235 DQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT 294
              +   DA  +I   L +Y+  K + V+ G+V  L   L D    +  +++++ +LSI+A 
Sbjct:   461 PRGKKDAATAIF-NLCIYQGNKVRAVKAGIVIHLMNFLVDPTGGM--IDEALSLLSILAG 517

Query:   295 CSEGRLALSEEASCAGRVVERVMKVGKTA-REDAVVVIWSMC 335
               EG++ ++        +VE V+K G    RE+A  ++W +C
Sbjct:   518 NPEGKIVIARSEPIPP-LVE-VIKTGSPRNRENAAAILWLLC 557

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LSA6	PUB29_ARATH	6, ., 3, ., 2, ., -	0.4014	0.9597	0.9204	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	0.691

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	398
smart00504	63	smart00504, Ubox, Modified RING finger domain	3e-21
pfam04564	73	pfam04564, U-box, U-box domain	4e-16
pfam13445	55	pfam13445, zf-RING_LisH, RING-type zinc-finger, Li	6e-04

>gnl|CDD|128780 smart00504, Ubox, Modified RING finger domain

 Score = 86.1 bits (214), Expect = 3e-21
 Identities = 33/63 (52%), Positives = 42/63 (66%), Gaps = 1/63 (1%)

Query: 14 FRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLI 73
          F CPISL+VMK PV L +G TY+RS+I+ WL S H T P T Q L+ ++ +PNL L   I
Sbjct: 2  FLCPISLEVMKDPVILPSGQTYERSAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAI 60

Query: 74 AHW 76
            W
Sbjct: 61 QEW 63

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination. Length = 63

>gnl|CDD|203049 pfam04564, U-box, U-box domain

 Score = 71.9 bits (177), Expect = 4e-16
 Identities = 29/67 (43%), Positives = 42/67 (62%)

Query: 10 VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTL 69
          +P+ F  PI+L++MK PV L +G+TYDRS+I+  L S   T P T + L+  + +PNL L
Sbjct: 1  IPDEFLDPITLELMKDPVILPSGITYDRSTIERHLLSVDPTDPFTREPLTHDQLIPNLEL 60

Query: 70 HRLIAHW 76
             I  W
Sbjct: 61 KEKIDAW 67

This domain is related to the Ring finger pfam00097 but lacks the zinc binding residues. Length = 73

>gnl|CDD|222135 pfam13445, zf-RING_LisH, RING-type zinc-finger, LisH dimerisation motif

 Score = 37.3 bits (87), Expect = 6e-04
 Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 5/44 (11%)

Query: 14 FRCPISLDVMKS----PVSLCTGVTYDRSSIQHWLE-SGHDTCP 52
          F CPIS +VM      PV L  G  Y R +++   +  G   CP
Sbjct: 11 FVCPISKEVMTDEENPPVMLPCGHVYSRKALEKLAKNGGKFKCP 54

This zinc-finger is the dimerisation motif for LisH proteins, and is also a typical RING-type of plant ubiquitin ligases. Length = 55

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	398
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.96
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.95
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	99.95
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.94
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	99.93
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.93
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.91
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.89
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	99.86
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.8
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.8
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.8
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.76
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	99.74
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.65
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.64
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.62
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.57
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.51
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	99.49
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.46
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.34
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.33
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	99.33
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.31
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	99.3
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.3
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.28
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.22
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.21
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.19
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	99.16
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.13
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	99.1
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.08
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	99.08
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.05
PRK09687	280	putative lyase; Provisional	99.03
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	99.03
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	98.99
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	98.92
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.88
PRK09687	280	putative lyase; Provisional	98.86
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.83
PHA02929	238	N1R/p28-like protein; Provisional	98.82
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.81
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.8
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	98.8
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.76
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	98.75
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	98.74
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	98.73
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.72
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.72
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.71
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.71
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.69
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.67
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	98.63
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.62
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	98.62
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.57
PHA02926	242	zinc finger-like protein; Provisional	98.56
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.53
PF14634	44	zf-RING_5: zinc-RING finger domain	98.48
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.44
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	98.44
PF05536	543	Neurochondrin: Neurochondrin	98.42
KOG2042	943	consensus Ubiquitin fusion degradation protein-2 [	98.42
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.41
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	98.39
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	98.37
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.36
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.36
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.36
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.3
COG5113	929	UFD2 Ubiquitin fusion degradation protein 2 [Postt	98.24
PF05536	543	Neurochondrin: Neurochondrin	98.2
KOG1293	678	consensus Proteins containing armadillo/beta-caten	98.19
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.17
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	98.15
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	98.13
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	98.13
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.1
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.1
KOG2660	331	consensus Locus-specific chromosome binding protei	98.09
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.07
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.03
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.01
KOG0297	391	consensus TNF receptor-associated factor [Signal t	97.97
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	97.96
PTZ00429	746	beta-adaptin; Provisional	97.96
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	97.95
KOG0289	506	consensus mRNA splicing factor [General function p	97.95
COG5222	427	Uncharacterized conserved protein, contains RING Z	97.91
KOG1242	569	consensus Protein containing adaptin N-terminal re	97.85
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.85
COG5152	259	Uncharacterized conserved protein, contains RING a	97.84
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.83
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.76
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	97.76
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	97.71
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.71
KOG3678	832	consensus SARM protein (with sterile alpha and arm	97.69
KOG2973	353	consensus Uncharacterized conserved protein [Funct	97.67
PTZ00429	746	beta-adaptin; Provisional	97.62
TIGR02270	410	conserved hypothetical protein. Members are found	97.59
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	97.57
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.56
KOG2973	353	consensus Uncharacterized conserved protein [Funct	97.53
KOG4413	524	consensus 26S proteasome regulatory complex, subun	97.5
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.46
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	97.44
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	97.41
KOG3039	303	consensus Uncharacterized conserved protein [Funct	97.4
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	97.39
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.38
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.37
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.36
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.34
TIGR02270	410	conserved hypothetical protein. Members are found	97.32
KOG4367	699	consensus Predicted Zn-finger protein [Function un	97.3
KOG2734	536	consensus Uncharacterized conserved protein [Funct	97.29
COG5369	743	Uncharacterized conserved protein [Function unknow	97.29
KOG1002	791	consensus Nucleotide excision repair protein RAD16	97.27
KOG3036	293	consensus Protein involved in cell differentiation	97.26
PF04641	260	Rtf2: Rtf2 RING-finger	97.24
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	97.24
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	97.24
KOG4413	524	consensus 26S proteasome regulatory complex, subun	97.19
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	97.17
KOG2979	262	consensus Protein involved in DNA repair [General	97.14
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	97.12
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.12
COG5369	743	Uncharacterized conserved protein [Function unknow	97.09
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	97.02
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.0
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	96.99
KOG3036	293	consensus Protein involved in cell differentiation	96.96
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.96
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	96.95
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	96.95
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	96.91
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	96.83
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	96.83
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.71
KOG0212	675	consensus Uncharacterized conserved protein [Funct	96.7
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	96.67
KOG0212	675	consensus Uncharacterized conserved protein [Funct	96.64
KOG3039	303	consensus Uncharacterized conserved protein [Funct	96.63
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	96.61
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	96.6
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	96.51
COG1413	335	FOG: HEAT repeat [Energy production and conversion	96.5
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	96.5
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	96.5
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	96.48
COG1413	335	FOG: HEAT repeat [Energy production and conversion	96.44
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	96.43
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	96.42
KOG3113	293	consensus Uncharacterized conserved protein [Funct	96.38
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.33
KOG1242	569	consensus Protein containing adaptin N-terminal re	96.29
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	96.27
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	96.2
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	96.2
KOG2259	823	consensus Uncharacterized conserved protein [Funct	96.18
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	96.09
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	96.02
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	96.01
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	96.0
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	95.98
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	95.92
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	95.9
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.9
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	95.86
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	95.65
PF02891	50	zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR0041	95.62
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	95.61
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	95.59
PF05004	309	IFRD: Interferon-related developmental regulator (	95.5
PF05004	309	IFRD: Interferon-related developmental regulator (	95.44
PF07814	361	WAPL: Wings apart-like protein regulation of heter	95.39
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	95.38
KOG1824	1233	consensus TATA-binding protein-interacting protein	95.34
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	95.34
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	95.29
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	95.28
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	95.27
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	95.25
KOG1824	1233	consensus TATA-binding protein-interacting protein	95.24
KOG2025	892	consensus Chromosome condensation complex Condensi	95.22
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.19
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	95.17
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	95.17
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	95.15
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	95.07
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	95.06
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	95.05
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	95.01
COG5096	757	Vesicle coat complex, various subunits [Intracellu	94.96
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	94.94
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	94.92
COG5627	275	MMS21 DNA repair protein MMS21 [DNA replication, r	94.88
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	94.62
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	94.6
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	94.54
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	94.51
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	94.49
COG5109	396	Uncharacterized conserved protein, contains RING Z	94.48
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	94.37
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	94.17
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	94.17
KOG0825	1134	consensus PHD Zn-finger protein [General function	94.16
KOG1001	674	consensus Helicase-like transcription factor HLTF/	94.15
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	94.12
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	94.08
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	94.04
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	93.96
PF08045	257	CDC14: Cell division control protein 14, SIN compo	93.9
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	93.9
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	93.72
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	93.68
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	93.56
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	93.48
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	93.48
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	93.44
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	93.4
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	93.27
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	93.18
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	93.15
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	93.11
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	93.08
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	92.91
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	92.84
KOG3161	861	consensus Predicted E3 ubiquitin ligase [Posttrans	92.78
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	92.74
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	92.73
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	92.57
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	92.56
KOG0414	1251	consensus Chromosome condensation complex Condensi	92.45
KOG0301	745	consensus Phospholipase A2-activating protein (con	92.13
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	92.13
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	92.11
KOG4653	982	consensus Uncharacterized conserved protein [Funct	92.02
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	92.0
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	91.92
COG5096	757	Vesicle coat complex, various subunits [Intracellu	91.89
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	91.85
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	91.55
KOG2259	823	consensus Uncharacterized conserved protein [Funct	91.47
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	91.44
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	91.25
KOG2032	533	consensus Uncharacterized conserved protein [Funct	91.08
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	90.93
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	90.81
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	90.8
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	90.75
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	90.72
PRK14707	2710	hypothetical protein; Provisional	90.51
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	90.45
KOG4653	982	consensus Uncharacterized conserved protein [Funct	90.39
COG5175	480	MOT2 Transcriptional repressor [Transcription]	90.22
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	90.19
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	90.11
PF07814	361	WAPL: Wings apart-like protein regulation of heter	90.05
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	89.6
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	89.45
PRK14707	2710	hypothetical protein; Provisional	89.29
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	89.13
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	88.76
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	88.76
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	88.76
cd03561	133	VHS VHS domain family; The VHS domain is present i	88.66
KOG0883	518	consensus Cyclophilin type, U box-containing pepti	88.34
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	88.28
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	88.24
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	88.06
KOG4362	684	consensus Transcriptional regulator BRCA1 [Replica	87.96
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	87.73
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	87.46
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	87.31
KOG0567	289	consensus HEAT repeat-containing protein [General	87.24
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	87.16
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	87.09
KOG0301	745	consensus Phospholipase A2-activating protein (con	87.08
PF14726	98	RTTN_N: Rotatin, an armadillo repeat protein, cent	87.0
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	86.96
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	86.9
COG5219	1525	Uncharacterized conserved protein, contains RING Z	86.48
KOG0298	1394	consensus DEAD box-containing helicase-like transc	86.28
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	86.2
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	86.06
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	86.04
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	86.04
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	86.01
PF04641	260	Rtf2: Rtf2 RING-finger	85.81
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	85.24
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	84.53
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	84.39
KOG2956	516	consensus CLIP-associating protein [General functi	84.32
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	84.0
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	83.54
KOG0396	389	consensus Uncharacterized conserved protein [Funct	83.49
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	83.36
KOG1940	276	consensus Zn-finger protein [General function pred	82.4
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	81.62
KOG4739	233	consensus Uncharacterized protein involved in syna	80.94
PF04499	475	SAPS: SIT4 phosphatase-associated protein; InterPr	80.79
KOG0414	1251	consensus Chromosome condensation complex Condensi	80.55
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	80.14

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.96  E-value=3.3e-27  Score=256.84  Aligned_cols=285  Identities=15%  Similarity=0.220  Sum_probs=241.7

Q ss_pred             HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939           84 EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE  163 (398)
Q Consensus        84 ~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~  163 (398)
                      ...+..++++|++...+.+.+..|+..|+.+++.+++||.++++.+|++|.|+.+|.+ .+  ..++++|+.+|.+++.+
T Consensus        12 ~~~v~~Lve~L~s~~ss~~~~~~Al~~Lr~Lak~~~enR~~Ia~~aGaIP~LV~lL~s-g~--~~vk~nAaaaL~nLS~~   88 (2102)
T PLN03200         12 LASVAQCIEQLRAKSSSPQEKELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRS-GT--LGAKVNAAAVLGVLCKE   88 (2102)
T ss_pred             HHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHhcChHHHHHHHHccCcHHHHHHHHcC-CC--HHHHHHHHHHHHHHhcC
Confidence            4568889999998744345889999999999999999999999866999999999987 44  45669999999999976


Q ss_pred             cchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC---chhHHHhhchhhHHHHHHHHhcccc--CHHH
Q 015939          164 NGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD---NESKRRVLETENLLSALFDYLKLAE--DQAL  238 (398)
Q Consensus       164 ~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~---~~~~~~i~~~~g~i~~Lv~lL~~~~--~~~~  238 (398)
                      ++    +|.. +...|+||.|+++|++++.+.|++|+.+|.+|+.+   ++++..++...|++|+|+.+|++++  +..+
T Consensus        89 e~----nk~~-Iv~~GaIppLV~LL~sGs~eaKe~AA~AL~sLS~~~~~D~~~~~I~v~~GaVp~Lv~lL~~gsk~d~~L  163 (2102)
T PLN03200         89 ED----LRVK-VLLGGCIPPLLSLLKSGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVV  163 (2102)
T ss_pred             HH----HHHH-HHHcCChHHHHHHHHCCCHHHHHHHHHHHHHHHcCcchhhhhhhhhhhcCChHHHHHHHhCCchhhHHH
Confidence            44    4677 55799999999999999999999999999999987   4455455444899999999999872  2235


Q ss_pred             HHHHHHHHHHhcCCcchHHH-HHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCC-HHHHHHHhhccCcHHHHHHHH
Q 015939          239 NDAILSILITLSVYRSVKAQ-LVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATC-SEGRLALSEEASCAGRVVERV  316 (398)
Q Consensus       239 ~~~a~~aL~~Ls~~~~~~~~-~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~-~~~~~~i~~~~g~v~~Lv~~l  316 (398)
                      ++.++.+|++|+...+++.. ++++|+|+.|+++|+  ++++.+++.|+.+|.+++.+ ++.+..++ ++|+||.|+++|
T Consensus       164 ~~~Av~AL~nLs~~~en~~~~IIeaGaVp~LV~LLs--S~d~~lQ~eAa~aLa~Lass~ee~~~aVI-eaGaVP~LV~LL  240 (2102)
T PLN03200        164 EGLLTGALRNLCGSTDGFWSATLEAGGVDILVKLLS--SGNSDAQANAASLLARLMMAFESSISKVL-DAGAVKQLLKLL  240 (2102)
T ss_pred             HHHHHHHHHHHhcCccchHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHcCChHHHHHHH-HCCCHHHHHHHH
Confidence            67788999999999998765 579999999999995  47899999999999888764 77899998 579999999999


Q ss_pred             hcc-ChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcC--------cHHHHHHHHHHHHHHhc
Q 015939          317 MKV-GKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSEN--------EGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       317 ~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~--------~~~~k~~A~~lL~~l~~  381 (398)
                      .++ ++.++++|+++|.+|+.++  .+.+..+++.|+++.|+.++++..        +...++.|.++|.++.+
T Consensus       241 ~sg~~~~VRE~AA~AL~nLAs~s--~e~r~~Iv~aGgIp~LI~lL~sp~~e~~~~~~~~~Lqe~AvwALsNIcg  312 (2102)
T PLN03200        241 GQGNEVSVRAEAAGALEALSSQS--KEAKQAIADAGGIPALINATVAPSKEFMQGEFAQALQENAMGALANICG  312 (2102)
T ss_pred             ccCCChHHHHHHHHHHHHHhcCC--HHHHHHHHHCCCHHHHHHHHhCcchhhhccccchHHHHHHHHHHHHHhC
Confidence            864 5689999999999999854  789999999999999999997532        23469999999999887

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=1.8e-26  Score=208.69  Aligned_cols=274  Identities=15%  Similarity=0.205  Sum_probs=239.5

Q ss_pred             HHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchH
Q 015939           88 RVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVK  167 (398)
Q Consensus        88 ~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~  167 (398)
                      ..|+.++.++..+  .+..++++|.+++.. +.||..++.. |++.+|.++-++ .+  ..++.+++.+|.+|...-+  
T Consensus       129 ~~Li~qmmtd~ve--vqcnaVgCitnLaT~-d~nk~kiA~s-GaL~pltrLaks-kd--irvqrnatgaLlnmThs~E--  199 (550)
T KOG4224|consen  129 DLLILQMMTDGVE--VQCNAVGCITNLATF-DSNKVKIARS-GALEPLTRLAKS-KD--IRVQRNATGALLNMTHSRE--  199 (550)
T ss_pred             HHHHHHhcCCCcE--EEeeehhhhhhhhcc-ccchhhhhhc-cchhhhHhhccc-ch--hhHHHHHHHHHHHhhhhhh--
Confidence            3456666655544  888999999999988 7899999999 999999996666 44  5677999999999986544  


Q ss_pred             HHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhh--HHHHHHHHhccccCHHHHHHHHHH
Q 015939          168 EKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETEN--LLSALFDYLKLAEDQALNDAILSI  245 (398)
Q Consensus       168 ~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g--~i~~Lv~lL~~~~~~~~~~~a~~a  245 (398)
                        ||+. ++++|++|.||+++++++.++|.+++.+|.+++.+..+|..+++ .+  .++.||.++.++ +++++..|..+
T Consensus       200 --nRr~-LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laq-aep~lv~~Lv~Lmd~~-s~kvkcqA~lA  274 (550)
T KOG4224|consen  200 --NRRV-LVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQ-AEPKLVPALVDLMDDG-SDKVKCQAGLA  274 (550)
T ss_pred             --hhhh-hhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHh-cccchHHHHHHHHhCC-ChHHHHHHHHH
Confidence              4776 89999999999999999999999999999999999999999987 56  999999999999 88999999999


Q ss_pred             HHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhc-cChhHH
Q 015939          246 LITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMK-VGKTAR  324 (398)
Q Consensus       246 L~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~-~~~~~~  324 (398)
                      |.+|+++.+.+..++++|++|.++++|++  +.....-....+++|++.+|-+---|. ++|.+.+||.+|.- .+.+.|
T Consensus       275 Lrnlasdt~Yq~eiv~ag~lP~lv~Llqs--~~~plilasVaCIrnisihplNe~lI~-dagfl~pLVrlL~~~dnEeiq  351 (550)
T KOG4224|consen  275 LRNLASDTEYQREIVEAGSLPLLVELLQS--PMGPLILASVACIRNISIHPLNEVLIA-DAGFLRPLVRLLRAGDNEEIQ  351 (550)
T ss_pred             HhhhcccchhhhHHHhcCCchHHHHHHhC--cchhHHHHHHHHHhhcccccCccccee-cccchhHHHHHHhcCCchhhh
Confidence            99999999999999999999999999964  666777788889999999998888888 68999999999987 456699


Q ss_pred             HHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          325 EDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       325 ~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      -+|+.+||+|+..+  +..+..+.++|+++++..++..+ ...+|..-..++..|+=
T Consensus       352 chAvstLrnLAass--e~n~~~i~esgAi~kl~eL~lD~-pvsvqseisac~a~Lal  405 (550)
T KOG4224|consen  352 CHAVSTLRNLAASS--EHNVSVIRESGAIPKLIELLLDG-PVSVQSEISACIAQLAL  405 (550)
T ss_pred             hhHHHHHHHHhhhh--hhhhHHHhhcCchHHHHHHHhcC-ChhHHHHHHHHHHHHHh
Confidence            99999999999865  68899999999999999999866 67888877777766653

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=99.95  E-value=1.2e-25  Score=244.87  Aligned_cols=278  Identities=12%  Similarity=0.142  Sum_probs=238.8

Q ss_pred             HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc
Q 015939           86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG  165 (398)
Q Consensus        86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~  165 (398)
                      .++.|++.|.+++.+  .+..|++.|.+++.+++.++..++++ |++|.|+.+|.+ ++  .+++++|+++|.|++.+++
T Consensus       447 gIp~LV~LL~s~s~~--iQ~~A~~~L~nLa~~ndenr~aIiea-GaIP~LV~LL~s-~~--~~iqeeAawAL~NLa~~~~  520 (2102)
T PLN03200        447 GVQLLISLLGLSSEQ--QQEYAVALLAILTDEVDESKWAITAA-GGIPPLVQLLET-GS--QKAKEDSATVLWNLCCHSE  520 (2102)
T ss_pred             cHHHHHHHHcCCCHH--HHHHHHHHHHHHHcCCHHHHHHHHHC-CCHHHHHHHHcC-CC--HHHHHHHHHHHHHHhCCcH
Confidence            578899999987654  88899999999999989999999999 999999999988 44  4567999999999998644


Q ss_pred             hHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhH--------------------------------
Q 015939          166 VKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESK--------------------------------  213 (398)
Q Consensus       166 ~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~--------------------------------  213 (398)
                      +    .+.++.+.|+++.|+++|++++.+.++.|+++|.+|+.+.+..                                
T Consensus       521 q----ir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~  596 (2102)
T PLN03200        521 D----IRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVAS  596 (2102)
T ss_pred             H----HHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcc
Confidence            3    4554668899999999999999999999999999996432111                                


Q ss_pred             -----HHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCC-cchHHHHHHcCChHHHHHHhcccCcchhhHHHHHH
Q 015939          214 -----RRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVY-RSVKAQLVELGMVQILTRILSDSRTQILTVEKSIK  287 (398)
Q Consensus       214 -----~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~  287 (398)
                           .......|+++.|+++|+++ +++.++.|+++|.+++.+ .+++..++..|+|++|+.+|+  +.+.++++.+++
T Consensus       597 ~~d~~~~g~~~~ggL~~Lv~LL~sg-s~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLs--s~~~~v~keAA~  673 (2102)
T PLN03200        597 LEDLVREGSAANDALRTLIQLLSSS-KEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLT--NNTEAVATQSAR  673 (2102)
T ss_pred             hhHHHHHhhhccccHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHh--cCChHHHHHHHH
Confidence                 11111368999999999999 889999999999999865 467888999999999999995  478889999999


Q ss_pred             HHHHHhC--CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCc
Q 015939          288 MLSIVAT--CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENE  365 (398)
Q Consensus       288 ~L~~La~--~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~  365 (398)
                      +|.+|+.  .++++..++ +.|+|+.|++++...+..+.+.|+.+|.+++..   .+.+..+.+.|+++.|+.+|+++ +
T Consensus       674 AL~nL~~~~~~~q~~~~v-~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~---~e~~~ei~~~~~I~~Lv~lLr~G-~  748 (2102)
T PLN03200        674 ALAALSRSIKENRKVSYA-AEDAIKPLIKLAKSSSIEVAEQAVCALANLLSD---PEVAAEALAEDIILPLTRVLREG-T  748 (2102)
T ss_pred             HHHHHHhCCCHHHHHHHH-HcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcC---chHHHHHHhcCcHHHHHHHHHhC-C
Confidence            9999995  445566677 579999999999999999999999999999985   57888899999999999999988 8


Q ss_pred             HHHHHHHHHHHHHHhc
Q 015939          366 GIVRKMCGDLVKVLGK  381 (398)
Q Consensus       366 ~~~k~~A~~lL~~l~~  381 (398)
                      ++.|++|+++|..|.+
T Consensus       749 ~~~k~~Aa~AL~~L~~  764 (2102)
T PLN03200        749 LEGKRNAARALAQLLK  764 (2102)
T ss_pred             hHHHHHHHHHHHHHHh
Confidence            9999999998877776

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.94  E-value=2.7e-25  Score=213.72  Aligned_cols=283  Identities=16%  Similarity=0.169  Sum_probs=243.5

Q ss_pred             HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939           84 EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE  163 (398)
Q Consensus        84 ~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~  163 (398)
                      .+.++.++.-|+..+. ...+.+|+++|.+++++..+.-..++++ |++|.++.+|.+ +  +..+.++|+++|.|++.+
T Consensus       108 ~G~v~~lV~~l~~~~~-~~lq~eAAWaLTnIAsgtse~T~~vv~a-gavp~fi~Ll~s-~--~~~v~eQavWALgNIagd  182 (514)
T KOG0166|consen  108 SGVVPRLVEFLSRDDN-PTLQFEAAWALTNIASGTSEQTKVVVDA-GAVPIFIQLLSS-P--SADVREQAVWALGNIAGD  182 (514)
T ss_pred             cCcHHHHHHHHccCCC-hhHHHHHHHHHHHHhcCchhhccccccC-CchHHHHHHhcC-C--cHHHHHHHHHHHhccccC
Confidence            3457888988875543 2478999999999999999999999999 999999999998 3  456779999999999998


Q ss_pred             cchHHHhhHhhhccCCChHHHHHHHhcCCh-hhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHH
Q 015939          164 NGVKEKLNRLILNTYNCLPLFLEILREGNL-DSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAI  242 (398)
Q Consensus       164 ~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a  242 (398)
                      ++..   |.. +.+.|+++.|+.++...+. ....+++|+|.+|+.+.+-...+.....++|.|..+|.+. |+++...|
T Consensus       183 s~~~---Rd~-vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~-D~~Vl~Da  257 (514)
T KOG0166|consen  183 SPDC---RDY-VLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHST-DEEVLTDA  257 (514)
T ss_pred             ChHH---HHH-HHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcC-CHHHHHHH
Confidence            7764   666 7799999999999998754 7788999999999999655555554478999999999999 99999999


Q ss_pred             HHHHHHhcCCcchHHHH-HHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhc-cC
Q 015939          243 LSILITLSVYRSVKAQL-VELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMK-VG  320 (398)
Q Consensus       243 ~~aL~~Ls~~~~~~~~~-v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~-~~  320 (398)
                      +|+|.+|+.+...+..+ ++.|+++.|+.+|.  +.++.++--|+.++.|++.+.+...+.+-+.|+++.|..++.. ..
T Consensus       258 ~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~--~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~  335 (514)
T KOG0166|consen  258 CWALSYLTDGSNEKIQMVIDAGVVPRLVDLLG--HSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPK  335 (514)
T ss_pred             HHHHHHHhcCChHHHHHHHHccchHHHHHHHc--CCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcc
Confidence            99999999777655555 49999999999995  4788889999999999988776666655578999999999984 56


Q ss_pred             hhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          321 KTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       321 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      ...++.|++++.|++.+  +.+.+..++.+|.+|.|+.+|+++ +.++|+.|++++.++.-
T Consensus       336 ~~ikkEAcW~iSNItAG--~~~qiqaVida~l~p~Li~~l~~~-ef~~rKEAawaIsN~ts  393 (514)
T KOG0166|consen  336 ESIKKEACWTISNITAG--NQEQIQAVIDANLIPVLINLLQTA-EFDIRKEAAWAISNLTS  393 (514)
T ss_pred             hhHHHHHHHHHHHhhcC--CHHHHHHHHHcccHHHHHHHHhcc-chHHHHHHHHHHHhhcc
Confidence            66899999999999984  488999999999999999999988 68999999999998876

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=3.3e-24  Score=206.26  Aligned_cols=284  Identities=13%  Similarity=0.160  Sum_probs=242.0

Q ss_pred             HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939           84 EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE  163 (398)
Q Consensus        84 ~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~  163 (398)
                      ...++.++..+.+++.+  .+.+|+++|.+++.+++..|+.+.+. |++++|+.++.. .+. ...+.+++++|.|||.+
T Consensus       151 agavp~fi~Ll~s~~~~--v~eQavWALgNIagds~~~Rd~vl~~-g~l~pLl~~l~~-~~~-~~~lRn~tW~LsNlcrg  225 (514)
T KOG0166|consen  151 AGAVPIFIQLLSSPSAD--VREQAVWALGNIAGDSPDCRDYVLSC-GALDPLLRLLNK-SDK-LSMLRNATWTLSNLCRG  225 (514)
T ss_pred             CCchHHHHHHhcCCcHH--HHHHHHHHHhccccCChHHHHHHHhh-cchHHHHHHhcc-ccc-hHHHHHHHHHHHHHHcC
Confidence            45577889999988876  89999999999999999999999999 999999999987 443 35679999999999998


Q ss_pred             cchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHH
Q 015939          164 NGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAIL  243 (398)
Q Consensus       164 ~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~  243 (398)
                      ....+..    -.-..++|.|..+|++.|.++...|+|+|.+|+.+..-+..++-..|+++.|+.+|.+. ++.++..|+
T Consensus       226 k~P~P~~----~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~-~~~v~~PaL  300 (514)
T KOG0166|consen  226 KNPSPPF----DVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHS-SPKVVTPAL  300 (514)
T ss_pred             CCCCCcH----HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCC-CcccccHHH
Confidence            7543221    11346799999999999999999999999999988655555554589999999999999 788999999


Q ss_pred             HHHHHhcCCcchHHHH-HHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccCh
Q 015939          244 SILITLSVYRSVKAQL-VELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGK  321 (398)
Q Consensus       244 ~aL~~Ls~~~~~~~~~-v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~  321 (398)
                      +++.|+..+.+..... ++.|+++.|..+++. +....+++.|++++.|++. +.+..++++ ++|.+|.|+.+|.+++-
T Consensus       301 RaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~-s~~~~ikkEAcW~iSNItAG~~~qiqaVi-da~l~p~Li~~l~~~ef  378 (514)
T KOG0166|consen  301 RAIGNIVTGSDEQTQVVINSGALPVLSNLLSS-SPKESIKKEACWTISNITAGNQEQIQAVI-DANLIPVLINLLQTAEF  378 (514)
T ss_pred             hhccceeeccHHHHHHHHhcChHHHHHHHhcc-CcchhHHHHHHHHHHHhhcCCHHHHHHHH-HcccHHHHHHHHhccch
Confidence            9999999877766665 599999999999963 4556688999999999977 566778888 68999999999999999


Q ss_pred             hHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          322 TAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       322 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      +.|+.|++++.|++.. ++++....+++.|+|+.+..+|... +.++-..+...|..+-+
T Consensus       379 ~~rKEAawaIsN~ts~-g~~~qi~yLv~~giI~plcdlL~~~-D~~ii~v~Ld~l~nil~  436 (514)
T KOG0166|consen  379 DIRKEAAWAISNLTSS-GTPEQIKYLVEQGIIKPLCDLLTCP-DVKIILVALDGLENILK  436 (514)
T ss_pred             HHHHHHHHHHHhhccc-CCHHHHHHHHHcCCchhhhhcccCC-ChHHHHHHHHHHHHHHH
Confidence            9999999999999986 5689999999999999999999555 66667777777776655

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1e-24  Score=197.37  Aligned_cols=274  Identities=16%  Similarity=0.184  Sum_probs=238.5

Q ss_pred             HHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchH
Q 015939           88 RVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVK  167 (398)
Q Consensus        88 ~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~  167 (398)
                      ..+.+.-++.+.-  .+..+...|.++.+. .+||+.++.+ |++|.|++++++ ++.+  ++..+..++.+++.+... 
T Consensus       170 ~pltrLakskdir--vqrnatgaLlnmThs-~EnRr~LV~a-G~lpvLVsll~s-~d~d--vqyycttaisnIaVd~~~-  241 (550)
T KOG4224|consen  170 EPLTRLAKSKDIR--VQRNATGALLNMTHS-RENRRVLVHA-GGLPVLVSLLKS-GDLD--VQYYCTTAISNIAVDRRA-  241 (550)
T ss_pred             hhhHhhcccchhh--HHHHHHHHHHHhhhh-hhhhhhhhcc-CCchhhhhhhcc-CChh--HHHHHHHHhhhhhhhHHH-
Confidence            3344433333333  778899999999855 7899999999 999999999999 6655  559999999999976543 


Q ss_pred             HHhhHhhhccCC--ChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHH
Q 015939          168 EKLNRLILNTYN--CLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSI  245 (398)
Q Consensus       168 ~~~~~~il~~~g--~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~a  245 (398)
                         |+. ++..+  .++.|+++++.+++.++..|..+|++|+.+.++...|++ .|.+|.++++|+++ .....-+...+
T Consensus       242 ---Rk~-Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~-ag~lP~lv~Llqs~-~~plilasVaC  315 (550)
T KOG4224|consen  242 ---RKI-LAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVE-AGSLPLLVELLQSP-MGPLILASVAC  315 (550)
T ss_pred             ---HHH-HHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHh-cCCchHHHHHHhCc-chhHHHHHHHH
Confidence               555 77666  999999999999999999999999999999999999998 89999999999998 66688888999


Q ss_pred             HHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChhHH
Q 015939          246 LITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKTAR  324 (398)
Q Consensus       246 L~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~  324 (398)
                      +.|++..+-|-..++++|-+.+|+++|+. .++.+++-.|..+|++|+. .+.++..|.+ .|+||.+.+++.++.-.+|
T Consensus       316 IrnisihplNe~lI~dagfl~pLVrlL~~-~dnEeiqchAvstLrnLAasse~n~~~i~e-sgAi~kl~eL~lD~pvsvq  393 (550)
T KOG4224|consen  316 IRNISIHPLNEVLIADAGFLRPLVRLLRA-GDNEEIQCHAVSTLRNLAASSEHNVSVIRE-SGAIPKLIELLLDGPVSVQ  393 (550)
T ss_pred             HhhcccccCcccceecccchhHHHHHHhc-CCchhhhhhHHHHHHHHhhhhhhhhHHHhh-cCchHHHHHHHhcCChhHH
Confidence            99999999999999999999999999973 3466799999999999998 6678888884 6999999999999999999


Q ss_pred             HHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          325 EDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       325 ~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      +.-..++..|+..   +..+..+.+.|.++.|+....+. +.+++.+|+.+|-+|+.
T Consensus       394 seisac~a~Lal~---d~~k~~lld~gi~~iLIp~t~s~-s~Ev~gNaAaAL~Nlss  446 (550)
T KOG4224|consen  394 SEISACIAQLALN---DNDKEALLDSGIIPILIPWTGSE-SEEVRGNAAAALINLSS  446 (550)
T ss_pred             HHHHHHHHHHHhc---cccHHHHhhcCCcceeecccCcc-chhhcccHHHHHHhhhh
Confidence            9999999999985   56788899999999999988877 89999999999999987

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.91  E-value=2.5e-23  Score=186.85  Aligned_cols=285  Identities=12%  Similarity=0.150  Sum_probs=241.2

Q ss_pred             HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939           84 EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE  163 (398)
Q Consensus        84 ~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~  163 (398)
                      .+.++.++..|.+++.+  .+.+++++|.+++.+++..|+.+.+. |++++|+.+|.+ +..+...+.++.++|.||+.+
T Consensus       156 ~~AVPlfiqlL~s~~~~--V~eQavWALGNiAGDS~~~RD~vL~~-galeplL~ll~s-s~~~ismlRn~TWtLSNlcRG  231 (526)
T COG5064         156 AGAVPLFIQLLSSTEDD--VREQAVWALGNIAGDSEGCRDYVLQC-GALEPLLGLLLS-SAIHISMLRNATWTLSNLCRG  231 (526)
T ss_pred             CCchHHHHHHHcCchHH--HHHHHHHHhccccCCchhHHHHHHhc-CchHHHHHHHHh-ccchHHHHHHhHHHHHHhhCC
Confidence            45688999999988775  88999999999999999999999999 999999999998 666778899999999999986


Q ss_pred             cchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHH
Q 015939          164 NGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAIL  243 (398)
Q Consensus       164 ~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~  243 (398)
                      ....+. ...   -..++|.|.+++.+.++++...|+|+|..|+..+.-+...+-+.|..+.|+.+|.++ +..++..++
T Consensus       232 knP~P~-w~~---isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~-sa~iqtPal  306 (526)
T COG5064         232 KNPPPD-WSN---ISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHE-SAKIQTPAL  306 (526)
T ss_pred             CCCCCc-hHH---HHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCc-cccccCHHH
Confidence            543211 111   134689999999999999999999999999999776666665589999999999998 888999999


Q ss_pred             HHHHHhcCCcchHHH-HHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccCh
Q 015939          244 SILITLSVYRSVKAQ-LVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGK  321 (398)
Q Consensus       244 ~aL~~Ls~~~~~~~~-~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~  321 (398)
                      +.+.|+..+.+.+.+ ++++|+++++-.+|+  +....++..|++++.|+.. +.+..+++. ++..+|.|+.+|...+-
T Consensus       307 R~vGNIVTG~D~QTqviI~~G~L~a~~~lLs--~~ke~irKEaCWTiSNITAGnteqiqavi-d~nliPpLi~lls~ae~  383 (526)
T COG5064         307 RSVGNIVTGSDDQTQVIINCGALKAFRSLLS--SPKENIRKEACWTISNITAGNTEQIQAVI-DANLIPPLIHLLSSAEY  383 (526)
T ss_pred             HhhcCeeecCccceehheecccHHHHHHHhc--ChhhhhhhhhheeecccccCCHHHHHHHH-hcccchHHHHHHHHHHH
Confidence            999999877665555 559999999999995  4677999999999999976 556777777 68999999999999999


Q ss_pred             hHHHHHHHHHHHhhccC-CChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          322 TAREDAVVVIWSMCCVY-KDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       322 ~~~~~a~~~L~~l~~~~-~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      +.++.|++++.|.+.+. +-++....++..|++..|..+|... +.++-+.|...+...-+
T Consensus       384 k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~~~-dNkiiev~LD~~eniLk  443 (526)
T COG5064         384 KIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLDVV-DNKIIEVALDAIENILK  443 (526)
T ss_pred             HHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHhcc-CccchhhhHHHHHHHHh
Confidence            99999999999987654 3467888999999999999999876 45666777766665444

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.89  E-value=4.5e-22  Score=178.87  Aligned_cols=284  Identities=15%  Similarity=0.137  Sum_probs=236.9

Q ss_pred             HHHHHHHHHHHHcC-CCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhc
Q 015939           84 EQEVRVWIEKIKSE-NESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVN  162 (398)
Q Consensus        84 ~~~i~~l~~~l~~~-~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~  162 (398)
                      .+-++++++.|.+. ...  -+.+|.++|.+++++...--..++++ |+||.++.+|.+ +.  ..++++++++|.|++.
T Consensus       113 aGvVpRfvefm~~~q~~m--lqfEAaWalTNiaSGtt~QTkvVvd~-~AVPlfiqlL~s-~~--~~V~eQavWALGNiAG  186 (526)
T COG5064         113 AGVVPRFVEFMDEIQRDM--LQFEAAWALTNIASGTTQQTKVVVDA-GAVPLFIQLLSS-TE--DDVREQAVWALGNIAG  186 (526)
T ss_pred             ccccHHHHHHHHhcchhH--HHHHHHHHHhhhccCcccceEEEEeC-CchHHHHHHHcC-ch--HHHHHHHHHHhccccC
Confidence            45578888888543 222  46789999999999877666788889 999999999998 33  4577999999999998


Q ss_pred             ccchHHHhhHhhhccCCChHHHHHHHhcCC--hhhHHHHHHHHHHhhcCch---hHHHhhchhhHHHHHHHHhccccCHH
Q 015939          163 ENGVKEKLNRLILNTYNCLPLFLEILREGN--LDSKIGSIKILDSISLDNE---SKRRVLETENLLSALFDYLKLAEDQA  237 (398)
Q Consensus       163 ~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~~L~~~~~---~~~~i~~~~g~i~~Lv~lL~~~~~~~  237 (398)
                      +++.+   |.+ +...|++..++.+|.++-  .....++.|+|.+|+....   .-..+   ..++|.|.+|+-+. |++
T Consensus       187 DS~~~---RD~-vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~i---sqalpiL~KLiys~-D~e  258 (526)
T COG5064         187 DSEGC---RDY-VLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNI---SQALPILAKLIYSR-DPE  258 (526)
T ss_pred             CchhH---HHH-HHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHH---HHHHHHHHHHHhhc-CHH
Confidence            87764   666 668999999999998773  4778899999999998732   22233   46799999999998 999


Q ss_pred             HHHHHHHHHHHhcCCcchHHHHH-HcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHH
Q 015939          238 LNDAILSILITLSVYRSVKAQLV-ELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERV  316 (398)
Q Consensus       238 ~~~~a~~aL~~Ls~~~~~~~~~v-~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l  316 (398)
                      +...|+|+|..|+..+..+..++ +.|..+.|+++|+  +++..++.-|+..+.|+....+.+..+.-+.|+++.+-.+|
T Consensus       259 vlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs--~~sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lL  336 (526)
T COG5064         259 VLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLS--HESAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLL  336 (526)
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhc--CccccccCHHHHhhcCeeecCccceehheecccHHHHHHHh
Confidence            99999999999998877666655 9999999999995  47889999999999999887777766655789999999999


Q ss_pred             hccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhcCCCCCC
Q 015939          317 MKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGKASGLGN  387 (398)
Q Consensus       317 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~~~~~~~  387 (398)
                      .+.....++.|++.+.|++..  +.+..+.++++..+|.|+.+|.+. +-.+|+.|++++.+... +|...
T Consensus       337 s~~ke~irKEaCWTiSNITAG--nteqiqavid~nliPpLi~lls~a-e~k~kKEACWAisNats-gg~~~  403 (526)
T COG5064         337 SSPKENIRKEACWTISNITAG--NTEQIQAVIDANLIPPLIHLLSSA-EYKIKKEACWAISNATS-GGLNR  403 (526)
T ss_pred             cChhhhhhhhhheeecccccC--CHHHHHHHHhcccchHHHHHHHHH-HHHHHHHHHHHHHhhhc-cccCC
Confidence            988889999999999999984  478899999999999999999877 78899999988877665 44443

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=99.86  E-value=2.1e-22  Score=146.89  Aligned_cols=71  Identities=41%  Similarity=0.755  Sum_probs=61.8

Q ss_pred             CCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHHhhC
Q 015939           10 VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSHQL   80 (398)
Q Consensus        10 ~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~   80 (398)
                      +|++|+||||+++|+|||++++||||||.+|++|+.++..+||.|++++...++.||..|+..|+.|+.++
T Consensus         1 iP~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~pn~~Lk~~I~~~~~~~   71 (73)
T PF04564_consen    1 IPDEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLIPNRALKSAIEEWCAEN   71 (73)
T ss_dssp             SSGGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSEE-HHHHHHHHHHHHHC
T ss_pred             CCcccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccceECHHHHHHHHHHHHHc
Confidence            68999999999999999999999999999999999887889999999999999999999999999998654

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.80  E-value=5.9e-18  Score=171.65  Aligned_cols=216  Identities=18%  Similarity=0.287  Sum_probs=186.4

Q ss_pred             HHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHH
Q 015939          147 IAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSAL  226 (398)
Q Consensus       147 ~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~L  226 (398)
                      .+++..++..|.|++.+...    +.. +.+.|+++.|+++|++++.+....++.+|..|+...+|+..+++ .|+++.|
T Consensus       263 eqLlrv~~~lLlNLAed~~v----e~k-M~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m~~-~giV~kL  336 (708)
T PF05804_consen  263 EQLLRVAFYLLLNLAEDPRV----ELK-MVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEMAE-SGIVEKL  336 (708)
T ss_pred             HHHHHHHHHHHHHHhcChHH----HHH-HHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH-cCCHHHH
Confidence            36778889999999987765    455 77999999999999999999999999999999999999999998 8999999


Q ss_pred             HHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhcc
Q 015939          227 FDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEA  306 (398)
Q Consensus       227 v~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~  306 (398)
                      ++++.++ +.+++..++++|+|||.+.+.|..|++.|.||.|+.+|.    ++.....++.+|.+|+..+++|..+. ..
T Consensus       337 ~kLl~s~-~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~----d~~~~~val~iLy~LS~dd~~r~~f~-~T  410 (708)
T PF05804_consen  337 LKLLPSE-NEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLK----DPNFREVALKILYNLSMDDEARSMFA-YT  410 (708)
T ss_pred             HHHhcCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhC----CCchHHHHHHHHHHhccCHhhHHHHh-hc
Confidence            9999998 888999999999999999999999999999999999995    35566789999999999999999888 45


Q ss_pred             CcHHHHHHHHhc-cChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          307 SCAGRVVERVMK-VGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       307 g~v~~Lv~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      ++++.+++++.. +++.++..++.++.|++..   +++.+.+.+.|+++.|+.......++-    ..+++++++.
T Consensus       411 dcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~---~rnaqlm~~g~gL~~L~~ra~~~~D~l----LlKlIRNiS~  479 (708)
T PF05804_consen  411 DCIPQLMQMLLENSEEEVQLELIALLINLALN---KRNAQLMCEGNGLQSLMKRALKTRDPL----LLKLIRNISQ  479 (708)
T ss_pred             chHHHHHHHHHhCCCccccHHHHHHHHHHhcC---HHHHHHHHhcCcHHHHHHHHHhcccHH----HHHHHHHHHh
Confidence            899999999876 5566677788889999975   678889999999999997775543222    2346666666

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.80  E-value=4.6e-17  Score=146.56  Aligned_cols=210  Identities=14%  Similarity=0.214  Sum_probs=179.8

Q ss_pred             HHHhhHhhhccCCChHHHHHHHhcC-ChhhHHHHHHHHHHhhcCc----------hhHHHhhchhhHHHHHHHHhccccC
Q 015939          167 KEKLNRLILNTYNCLPLFLEILREG-NLDSKIGSIKILDSISLDN----------ESKRRVLETENLLSALFDYLKLAED  235 (398)
Q Consensus       167 ~~~~~~~il~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~----------~~~~~i~~~~g~i~~Lv~lL~~~~~  235 (398)
                      ||.||.. +++.++++.+.+.|... ...+...+.++++.|..++          +....|.. .|++..|+..|+..-+
T Consensus       178 hE~nrQ~-~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~-e~~l~~L~Eal~A~~d  255 (461)
T KOG4199|consen  178 HEVNRQL-FMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAK-EGILTALTEALQAGID  255 (461)
T ss_pred             hHHHHHH-HHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHH-hhhHHHHHHHHHccCC
Confidence            6778888 78999999999777644 4457778999999888776          44566666 6789999999998878


Q ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCc--chhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHH
Q 015939          236 QALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRT--QILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVV  313 (398)
Q Consensus       236 ~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~--~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv  313 (398)
                      |+....+..+|..|+..++.++.+++.|+++.|++++.+.+.  .......++.+|+.|++++.++..|++ .|+.+.++
T Consensus       256 p~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~-~gg~~~ii  334 (461)
T KOG4199|consen  256 PDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVE-KGGLDKII  334 (461)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHH-hcChHHHH
Confidence            999999999999999999999999999999999999975222  224678999999999999999999995 69999999


Q ss_pred             HHHhc--cChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCc-HHHHHHHHHHHHHHhc
Q 015939          314 ERVMK--VGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENE-GIVRKMCGDLVKVLGK  381 (398)
Q Consensus       314 ~~l~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~-~~~k~~A~~lL~~l~~  381 (398)
                      .++.+  .+|.+-+.++.++.-||..+  ++....+++.|+-...++.|+...- ..++++|+++++++-.
T Consensus       335 ~l~~~h~~~p~Vi~~~~a~i~~l~LR~--pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~  403 (461)
T KOG4199|consen  335 TLALRHSDDPLVIQEVMAIISILCLRS--PDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVV  403 (461)
T ss_pred             HHHHHcCCChHHHHHHHHHHHHHHhcC--cchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHH
Confidence            99976  78999999999999999876  6788899999999999999987632 2589999999999876

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.80  E-value=9.3e-17  Score=144.64  Aligned_cols=285  Identities=19%  Similarity=0.274  Sum_probs=231.2

Q ss_pred             HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc
Q 015939           86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG  165 (398)
Q Consensus        86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~  165 (398)
                      ....+++.|....++.+.....+..++.-|..++.||+.+++. |+.+.+...|...+  ..++.+...+++..|..+++
T Consensus       146 g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~hE~nrQ~~m~~-~il~Li~~~l~~~g--k~~~VRel~~a~r~l~~dDD  222 (461)
T KOG4199|consen  146 AMAVVLKLLALKVESEEVTLLTLQWLQKACIMHEVNRQLFMEL-KILELILQVLNREG--KTRTVRELYDAIRALLTDDD  222 (461)
T ss_pred             cHHHHHHHHhcccchHHHHHHHHHHHHHHHHHhHHHHHHHHHh-hHHHHHHHHHcccC--ccHHHHHHHHHHHHhcCCCc
Confidence            3445666665444433466777888999999999999999999 99999998887622  23567888889988888776


Q ss_pred             hH------HHhhHhhhccCCChHHHHHHHhcC-ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCH--
Q 015939          166 VK------EKLNRLILNTYNCLPLFLEILREG-NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQ--  236 (398)
Q Consensus       166 ~~------~~~~~~il~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~--  236 (398)
                      -.      ...-+. ++..|++..|++.|..+ ++.+...++.+|..|+..++.+..|.+ .|+++.|++++.+..+.  
T Consensus       223 iRV~fg~ah~hAr~-ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e-~GGl~tl~~~i~d~n~~~~  300 (461)
T KOG4199|consen  223 IRVVFGQAHGHART-IAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAE-SGGLDTLLRCIDDSNEQGN  300 (461)
T ss_pred             eeeecchhhHHHHH-HHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHH-ccCHHHHHHHHhhhchhhH
Confidence            31      111223 66778999999999988 899999999999999999999999998 89999999999985222  


Q ss_pred             -HHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHH
Q 015939          237 -ALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVE  314 (398)
Q Consensus       237 -~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~  314 (398)
                       .+.+.++..|..|+.+++++..+|+.|+.+.++.++....++|.+.+.++.++.-|+- .|++-..+. ++|+-...|+
T Consensus       301 r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~i-e~G~a~~avq  379 (461)
T KOG4199|consen  301 RTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAI-EAGAADLAVQ  379 (461)
T ss_pred             HHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHH-hcchHHHHHH
Confidence             3567899999999999999999999999999999997677899999999999999986 788888888 4799999999


Q ss_pred             HHhc--cChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Q 015939          315 RVMK--VGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLG  380 (398)
Q Consensus       315 ~l~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~  380 (398)
                      .|+.  ....+|++|+..+.||...+  .+.+..++.. ++++|+..-... .+..+.-|...|+-|.
T Consensus       380 AmkahP~~a~vQrnac~~IRNiv~rs--~~~~~~~l~~-GiE~Li~~A~~~-h~tce~~akaALRDLG  443 (461)
T KOG4199|consen  380 AMKAHPVAAQVQRNACNMIRNIVVRS--AENRTILLAN-GIEKLIRTAKAN-HETCEAAAKAALRDLG  443 (461)
T ss_pred             HHHhCcHHHHHHHHHHHHHHHHHHhh--hhccchHHhc-cHHHHHHHHHhc-CccHHHHHHHHHHhcC
Confidence            9987  46678999999999999875  5666666655 567788777666 6777777777887664

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.76  E-value=2.2e-16  Score=160.31  Aligned_cols=260  Identities=15%  Similarity=0.196  Sum_probs=213.3

Q ss_pred             HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc
Q 015939           86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG  165 (398)
Q Consensus        86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~  165 (398)
                      -++.|++.|.+.+.+  ....++.-|.+++-. .+|+..|.+. |+++.|+.++.+ .+  ..++..++++|.||+.+.+
T Consensus       291 iV~~Lv~~Ldr~n~e--llil~v~fLkkLSi~-~ENK~~m~~~-giV~kL~kLl~s-~~--~~l~~~aLrlL~NLSfd~~  363 (708)
T PF05804_consen  291 IVSLLVKCLDRENEE--LLILAVTFLKKLSIF-KENKDEMAES-GIVEKLLKLLPS-EN--EDLVNVALRLLFNLSFDPE  363 (708)
T ss_pred             CHHHHHHHHcCCCHH--HHHHHHHHHHHHcCC-HHHHHHHHHc-CCHHHHHHHhcC-CC--HHHHHHHHHHHHHhCcCHH
Confidence            466788888776543  677788889998855 6689999999 999999999998 43  4577999999999999776


Q ss_pred             hHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHH
Q 015939          166 VKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSI  245 (398)
Q Consensus       166 ~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~a  245 (398)
                      .    |.. +++.|++|.|+.+|..+  ..+..+..+|.+|+.++++|..+.. .++++.|+++|-+..++.+...++.+
T Consensus       364 ~----R~~-mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~-TdcIp~L~~~Ll~~~~~~v~~eliaL  435 (708)
T PF05804_consen  364 L----RSQ-MVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAY-TDCIPQLMQMLLENSEEEVQLELIAL  435 (708)
T ss_pred             H----HHH-HHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhh-cchHHHHHHHHHhCCCccccHHHHHH
Confidence            5    676 88999999999999864  4667799999999999999999987 68999999987766466677788999


Q ss_pred             HHHhcCCcchHHHHHHcCChHHHHHHhcc------------------------------------cCcchhhHHHHHHHH
Q 015939          246 LITLSVYRSVKAQLVELGMVQILTRILSD------------------------------------SRTQILTVEKSIKML  289 (398)
Q Consensus       246 L~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~------------------------------------~~~~~~~~~~al~~L  289 (398)
                      +.||+.+..|.+.|.+.|+++.|++....                                    ...+++..-.++++|
T Consensus       436 ~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiL  515 (708)
T PF05804_consen  436 LINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGIL  515 (708)
T ss_pred             HHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHH
Confidence            99999999999988888888776653210                                    123667778899999


Q ss_pred             HHHhCCHHHHHHHhhccCcHHHHHHHHhcc--ChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhc
Q 015939          290 SIVATCSEGRLALSEEASCAGRVVERVMKV--GKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSE  363 (398)
Q Consensus       290 ~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~  363 (398)
                      .||...+..-..++.+.+.+|-|.+.|..+  .+...-.++.++..++..   +++...+.+.|.++.|+.+|+..
T Consensus       516 aNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d---~~~A~lL~~sgli~~Li~LL~~k  588 (708)
T PF05804_consen  516 ANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASD---PECAPLLAKSGLIPTLIELLNAK  588 (708)
T ss_pred             HhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCC---HHHHHHHHhCChHHHHHHHHHhh
Confidence            999986666677776679999999999864  456777888888888863   78999999999999999999654

>smart00504 Ubox Modified RING finger domain

Probab=99.74  E-value=1.6e-18  Score=123.40  Aligned_cols=63  Identities=51%  Similarity=0.892  Sum_probs=59.8

Q ss_pred             cccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHH
Q 015939           13 LFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHW   76 (398)
Q Consensus        13 ~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~   76 (398)
                      +|.||||+++|+|||+++|||+|||+||.+|+.+ ..+||.|++++...++++|..+++.|+.|
T Consensus         1 ~~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~-~~~cP~~~~~~~~~~l~~~~~l~~~i~~~   63 (63)
T smart00504        1 EFLCPISLEVMKDPVILPSGQTYERRAIEKWLLS-HGTDPVTGQPLTHEDLIPNLALKSAIQEW   63 (63)
T ss_pred             CcCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHH-CCCCCCCcCCCChhhceeCHHHHHHHHhC
Confidence            5889999999999999999999999999999976 67899999999999999999999999987

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.65  E-value=6.3e-15  Score=146.73  Aligned_cols=284  Identities=16%  Similarity=0.168  Sum_probs=224.6

Q ss_pred             HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc
Q 015939           86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG  165 (398)
Q Consensus        86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~  165 (398)
                      ++++.+.+|.+....  .+..|..-|+.+|.++.+.+..+.+. |+|+.|+.+|++ .  ..+++.+|+++|.||.....
T Consensus       234 ~lpe~i~mL~~q~~~--~qsnaaaylQHlcfgd~~ik~~vrql-ggI~kLv~Ll~~-~--~~evq~~acgaLRNLvf~~~  307 (717)
T KOG1048|consen  234 TLPEVISMLMSQDPS--VQSNAAAYLQHLCFGDNKIKSRVRQL-GGIPKLVALLDH-R--NDEVQRQACGALRNLVFGKS  307 (717)
T ss_pred             ccHHHHHHHhccChh--hhHHHHHHHHHHHhhhHHHHHHHHHh-ccHHHHHHHhcC-C--cHHHHHHHHHHHHhhhcccC
Confidence            466778888877765  77888889999999999999999999 999999999998 3  34677999999999998765


Q ss_pred             hHHHhhHhhhccCCChHHHHHHHhc-CChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhcccc----------
Q 015939          166 VKEKLNRLILNTYNCLPLFLEILRE-GNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAE----------  234 (398)
Q Consensus       166 ~~~~~~~~il~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~----------  234 (398)
                      +. .||-. +.+.++|+.++++|+. +|.++++..+.+|+||++.|..|..+..  .++..|.+-+-.+.          
T Consensus       308 ~~-~NKla-i~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~--~al~tLt~~vI~P~Sgw~~~~~~~  383 (717)
T KOG1048|consen  308 TD-SNKLA-IKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIIT--SALSTLTDNVIIPHSGWEEEPAPR  383 (717)
T ss_pred             Cc-ccchh-hhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHH--HHHHHHHHhhcccccccCCCCccc
Confidence            41 24555 7789999999999997 5999999999999999999888888865  56777776554321          


Q ss_pred             ---CHHHHHHHHHHHHHhcC-CcchHHHHH-HcCChHHHHHHhc----ccCcchhhHHHHHHHHHHHhCCHH------H-
Q 015939          235 ---DQALNDAILSILITLSV-YRSVKAQLV-ELGMVQILTRILS----DSRTQILTVEKSIKMLSIVATCSE------G-  298 (398)
Q Consensus       235 ---~~~~~~~a~~aL~~Ls~-~~~~~~~~v-~~g~v~~Lv~lL~----~~~~~~~~~~~al~~L~~La~~~~------~-  298 (398)
                         +..+..++..+|.|+++ +.+.+++|- ..|.|+.|+-.++    ....|...+++|+.+|+||+-.-+      . 
T Consensus       384 ~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~  463 (717)
T KOG1048|consen  384 KAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYR  463 (717)
T ss_pred             ccccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhh
Confidence               24677899999999987 677899987 5799999998886    234678899999999999985221      0 


Q ss_pred             -------------------------HHH----------------------HhhccCcHHHHHHHHh-ccChhHHHHHHHH
Q 015939          299 -------------------------RLA----------------------LSEEASCAGRVVERVM-KVGKTAREDAVVV  330 (398)
Q Consensus       299 -------------------------~~~----------------------i~~~~g~v~~Lv~~l~-~~~~~~~~~a~~~  330 (398)
                                               ++.                      .. +.-+|.....+|. ..++.+.|.++++
T Consensus       464 ~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw-~p~vVr~Yl~Ll~~s~n~~TlEasaGa  542 (717)
T KOG1048|consen  464 QVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLW-HPSVVRPYLLLLALSKNDNTLEASAGA  542 (717)
T ss_pred             hHhhcccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeee-cHHHHHHHHHHHHHhcchHHHHHhhhh
Confidence                                     001                      00 1123444455554 3688999999999


Q ss_pred             HHHhhccCC--ChhHHHHH-HhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          331 IWSMCCVYK--DARVKEAV-VNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       331 L~~l~~~~~--~~~~~~~~-~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      |.|++.+..  ....+..+ .++.+++.|+.+|+.+ ++.+.+.++.+|++|+.
T Consensus       543 LQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~-~~~vv~s~a~~LrNls~  595 (717)
T KOG1048|consen  543 LQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRND-DSDVVRSAAGALRNLSR  595 (717)
T ss_pred             HhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcC-CchHHHHHHHHHhhhcc
Confidence            999998753  13355555 7899999999999988 78888999999999988

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.64  E-value=9.4e-15  Score=151.40  Aligned_cols=268  Identities=16%  Similarity=0.176  Sum_probs=216.2

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhh--c--c----C-CcHHHHHHHHHHHHhhhcccchHHHhhHhhhc
Q 015939          106 DYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNR--K--R----R-SEIAVLESAVRVLNLIVNENGVKEKLNRLILN  176 (398)
Q Consensus       106 ~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~--~--~----~-~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~  176 (398)
                      .|+..|-++. .++++|..+-++ |++.++.+||.-  .  .    + ....++..|..+|.||.+++..   ||...-.
T Consensus       317 aA~~~lMK~S-FDEEhR~aM~EL-G~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~---NKa~LCs  391 (2195)
T KOG2122|consen  317 AALCTLMKLS-FDEEHRHAMNEL-GGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVA---NKATLCS  391 (2195)
T ss_pred             HHHHHHHHhh-ccHHHHHHHHHh-hhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccccccc---chhhhhh
Confidence            6777777776 569999999999 999999998832  1  1    1 1235668899999999998776   5776455


Q ss_pred             cCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHH-hccccCHHHHHHHHHHHHHhcCC-c
Q 015939          177 TYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDY-LKLAEDQALNDAILSILITLSVY-R  253 (398)
Q Consensus       177 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~l-L~~~~~~~~~~~a~~aL~~Ls~~-~  253 (398)
                      ..|+|..+|..|.+...++.+--+.+|+||+=. +.+-..+....|-+..|+.. |++. ....+++.+.|||||+.+ .
T Consensus       392 ~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~-kEsTLKavLSALWNLSAHct  470 (2195)
T KOG2122|consen  392 QRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNK-KESTLKAVLSALWNLSAHCT  470 (2195)
T ss_pred             hhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhc-ccchHHHHHHHHhhhhhccc
Confidence            779999999999999999999999999999966 55555555558988998875 4554 667899999999999864 5


Q ss_pred             chHHHHH-HcCChHHHHHHhcc--cCcchhhHHHHHHHHHHHhC----CHHHHHHHhhccCcHHHHHHHHhccChhHHHH
Q 015939          254 SVKAQLV-ELGMVQILTRILSD--SRTQILTVEKSIKMLSIVAT----CSEGRLALSEEASCAGRVVERVMKVGKTARED  326 (398)
Q Consensus       254 ~~~~~~v-~~g~v~~Lv~lL~~--~~~~~~~~~~al~~L~~La~----~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~  326 (398)
                      +||..|. --|++..|+.+|.-  ++..-.+++.+-++|+|.+.    ++..|+-+. ...++..|+..|++.+-.+..+
T Consensus       471 eNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR-~~NCLq~LLQ~LKS~SLTiVSN  549 (2195)
T KOG2122|consen  471 ENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILR-RHNCLQTLLQHLKSHSLTIVSN  549 (2195)
T ss_pred             ccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHH-HhhHHHHHHHHhhhcceEEeec
Confidence            7999998 47999999999962  23455899999999999766    555666666 5599999999999999999999


Q ss_pred             HHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhcCC
Q 015939          327 AVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGKAS  383 (398)
Q Consensus       327 a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~~~  383 (398)
                      +++.||||...+  ++-.+.+.+.|+++.|..++.+. ...+-+-++..|++|=.+.
T Consensus       550 aCGTLWNLSAR~--p~DQq~LwD~gAv~mLrnLIhSK-hkMIa~GSaaALrNLln~R  603 (2195)
T KOG2122|consen  550 ACGTLWNLSARS--PEDQQMLWDDGAVPMLRNLIHSK-HKMIAMGSAAALRNLLNFR  603 (2195)
T ss_pred             chhhhhhhhcCC--HHHHHHHHhcccHHHHHHHHhhh-hhhhhhhHHHHHHHHhcCC
Confidence            999999999854  67788899999999999999877 5666666777777766643

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.62  E-value=4.3e-14  Score=127.95  Aligned_cols=196  Identities=10%  Similarity=0.054  Sum_probs=173.6

Q ss_pred             ccCCChHHHHHHHhcC-ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcc
Q 015939          176 NTYNCLPLFLEILREG-NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRS  254 (398)
Q Consensus       176 ~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~  254 (398)
                      -+++-++.|+.+|+.. ++.+++.+..++.+.+..+.++..+.+ .|+++.+..+|.++ ++.++..|+.+|.|++.+.+
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~-~Ggi~lI~~lL~~p-~~~vr~~AL~aL~Nls~~~e   86 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRD-LGGISLIGSLLNDP-NPSVREKALNALNNLSVNDE   86 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHH-cCCHHHHHHHcCCC-ChHHHHHHHHHHHhcCCChh
Confidence            4677899999999966 899999999999999999999999998 89999999999999 99999999999999999999


Q ss_pred             hHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHh
Q 015939          255 VKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSM  334 (398)
Q Consensus       255 ~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l  334 (398)
                      |+..+-.  .++.+.+.+.+...+..++..++.+|.+|+..++.+..+.   +.++.++.++..|+..++.+++++|.+|
T Consensus        87 n~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~---~~i~~ll~LL~~G~~~~k~~vLk~L~nL  161 (254)
T PF04826_consen   87 NQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA---NYIPDLLSLLSSGSEKTKVQVLKVLVNL  161 (254)
T ss_pred             hHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH---hhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            9987744  5788887665445578899999999999998877766665   4799999999999999999999999999


Q ss_pred             hccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          335 CCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       335 ~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      +.+   +.....++.++++..++.+++.+.+...-..+..+..++++
T Consensus       162 S~n---p~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~  205 (254)
T PF04826_consen  162 SEN---PDMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINE  205 (254)
T ss_pred             ccC---HHHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHH
Confidence            975   78888999999999999999988777888888888888876

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.57  E-value=5.6e-13  Score=120.74  Aligned_cols=197  Identities=13%  Similarity=0.101  Sum_probs=163.9

Q ss_pred             hhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHH
Q 015939          126 ASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDS  205 (398)
Q Consensus       126 ~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~  205 (398)
                      .+. +-++.|+.+|+.+.++.  +++.++.++.+.+..+..    +.. +.+.|+++.+..+|+.+++.++..|+++|.+
T Consensus         9 l~~-~~l~~Ll~lL~~t~dp~--i~e~al~al~n~aaf~~n----q~~-Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~N   80 (254)
T PF04826_consen    9 LEA-QELQKLLCLLESTEDPF--IQEKALIALGNSAAFPFN----QDI-IRDLGGISLIGSLLNDPNPSVREKALNALNN   80 (254)
T ss_pred             cCH-HHHHHHHHHHhcCCChH--HHHHHHHHHHhhccChhH----HHH-HHHcCCHHHHHHHcCCCChHHHHHHHHHHHh
Confidence            445 77899999999744544  559999999998876654    344 8899999999999999999999999999999


Q ss_pred             hhcCchhHHHhhchhhHHHHHHHHhcc-ccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHH
Q 015939          206 ISLDNESKRRVLETENLLSALFDYLKL-AEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEK  284 (398)
Q Consensus       206 L~~~~~~~~~i~~~~g~i~~Lv~lL~~-~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~  284 (398)
                      ++.+.+++..|-.   .++.+++...+ +-+.+++.+++++|.+|+..++....+..  .++.++++|.  .++..++..
T Consensus        81 ls~~~en~~~Ik~---~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~--~i~~ll~LL~--~G~~~~k~~  153 (254)
T PF04826_consen   81 LSVNDENQEQIKM---YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLAN--YIPDLLSLLS--SGSEKTKVQ  153 (254)
T ss_pred             cCCChhhHHHHHH---HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHh--hHHHHHHHHH--cCChHHHHH
Confidence            9999999998843   46666665443 33567999999999999998888766644  7999999995  478899999


Q ss_pred             HHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhc-cChhHHHHHHHHHHHhhccC
Q 015939          285 SIKMLSIVATCSEGRLALSEEASCAGRVVERVMK-VGKTAREDAVVVIWSMCCVY  338 (398)
Q Consensus       285 al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~-~~~~~~~~a~~~L~~l~~~~  338 (398)
                      ++++|.||+.++.....+. .+.++..++.++.+ .+...-..++.+..||..+-
T Consensus       154 vLk~L~nLS~np~~~~~Ll-~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~  207 (254)
T PF04826_consen  154 VLKVLVNLSENPDMTRELL-SAQVLSSFLSLFNSSESKENLLRVLTFFENINENI  207 (254)
T ss_pred             HHHHHHHhccCHHHHHHHH-hccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence            9999999999999988888 46899999999987 47777899999999996543

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.51  E-value=2.4e-13  Score=135.53  Aligned_cols=197  Identities=15%  Similarity=0.202  Sum_probs=165.4

Q ss_pred             HHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC--
Q 015939          132 VEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD--  209 (398)
Q Consensus       132 v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--  209 (398)
                      ++-.+.+|.+ .+..  ++-+|..-|..++..+..   .|.. +..-|+|++||.+|++.+.+++.+|+++|+||...  
T Consensus       235 lpe~i~mL~~-q~~~--~qsnaaaylQHlcfgd~~---ik~~-vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~  307 (717)
T KOG1048|consen  235 LPEVISMLMS-QDPS--VQSNAAAYLQHLCFGDNK---IKSR-VRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKS  307 (717)
T ss_pred             cHHHHHHHhc-cChh--hhHHHHHHHHHHHhhhHH---HHHH-HHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccC
Confidence            5666788887 5544  448899999999987665   4565 66889999999999999999999999999999876  


Q ss_pred             -chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCc-----------
Q 015939          210 -NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRT-----------  277 (398)
Q Consensus       210 -~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~-----------  277 (398)
                       ++|+..|.. .++|+.|+++|+...|.++++....+||||++++..+..+++. ++..|..-+-.+.+           
T Consensus       308 ~~~NKlai~~-~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~  385 (717)
T KOG1048|consen  308 TDSNKLAIKE-LNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKA  385 (717)
T ss_pred             Ccccchhhhh-cCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCccccc
Confidence             358889888 8999999999998658899999999999999997787777765 67777765532221           


Q ss_pred             -chhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhc------cChhHHHHHHHHHHHhhcc
Q 015939          278 -QILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMK------VGKTAREDAVVVIWSMCCV  337 (398)
Q Consensus       278 -~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~------~~~~~~~~a~~~L~~l~~~  337 (398)
                       +..+..++.++|+|+++ ..+.|+++.+..|.|..|+..++.      .+.+..|+++.+|.|+...
T Consensus       386 ~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYr  453 (717)
T KOG1048|consen  386 EDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYR  453 (717)
T ss_pred             ccceeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCch
Confidence             36788899999999988 889999999999999999999984      5888899999999998764

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=99.49  E-value=1.6e-14  Score=92.68  Aligned_cols=39  Identities=38%  Similarity=0.739  Sum_probs=30.9

Q ss_pred             ccCccccCCCceecCCCcccchhHHHHHHhcCC---CCCCcc
Q 015939           16 CPISLDVMKSPVSLCTGVTYDRSSIQHWLESGH---DTCPAT   54 (398)
Q Consensus        16 Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~---~~CP~~   54 (398)
                      ||||.++|+|||+++|||+||+.||++||++..   ..||.|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            899999999999999999999999999996432   469986

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.46  E-value=5.8e-11  Score=119.09  Aligned_cols=284  Identities=15%  Similarity=0.172  Sum_probs=217.9

Q ss_pred             HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc
Q 015939           86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG  165 (398)
Q Consensus        86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~  165 (398)
                      -.+.+.+-|.+++..  .+.-+++.|.++..++......+.+. +.++.++.+|.+ .  +..+.+.|..+|..++....
T Consensus        78 ~~~~L~~gL~h~~~~--Vr~l~l~~l~~~~~~~~~~~~~~~~~-~l~~~i~~~L~~-~--d~~Va~~A~~~L~~l~~~~~  151 (503)
T PF10508_consen   78 YQPFLQRGLTHPSPK--VRRLALKQLGRIARHSEGAAQLLVDN-ELLPLIIQCLRD-P--DLSVAKAAIKALKKLASHPE  151 (503)
T ss_pred             HHHHHHHHhcCCCHH--HHHHHHHHHHHHhcCCHHHHHHhcCc-cHHHHHHHHHcC-C--cHHHHHHHHHHHHHHhCCch
Confidence            345566677777664  78888999999988777767777777 999999999987 4  45677999999999998665


Q ss_pred             hHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHH
Q 015939          166 VKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILS  244 (398)
Q Consensus       166 ~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~  244 (398)
                      .    -.. +.+.+.+..|..++...+..+|.++..++..++.. ++....+.. .|+++.+++.|++. |.-++.+++.
T Consensus       152 ~----~~~-l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~-sgll~~ll~eL~~d-DiLvqlnale  224 (503)
T PF10508_consen  152 G----LEQ-LFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVN-SGLLDLLLKELDSD-DILVQLNALE  224 (503)
T ss_pred             h----HHH-HhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHh-ccHHHHHHHHhcCc-cHHHHHHHHH
Confidence            4    233 55777899999999988889999999999999876 566666666 89999999999996 8889999999


Q ss_pred             HHHHhcCCcchHHHHHHcCChHHHHHHhccc---------------------------------------------Ccch
Q 015939          245 ILITLSVYRSVKAQLVELGMVQILTRILSDS---------------------------------------------RTQI  279 (398)
Q Consensus       245 aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~---------------------------------------------~~~~  279 (398)
                      +|..|+..+.+...+.+.|+++.|..++.+.                                             +.|+
T Consensus       225 ll~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~  304 (503)
T PF10508_consen  225 LLSELAETPHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDP  304 (503)
T ss_pred             HHHHHHcChhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCCh
Confidence            9999999888999999999999999988542                                             2344


Q ss_pred             hhHHHHHHHHHHHhCCHHHHHHH-hhccCcHHHHHHHHh----ccChhHHHHHHHHHHHhhccCCC---hh---HHHH--
Q 015939          280 LTVEKSIKMLSIVATCSEGRLAL-SEEASCAGRVVERVM----KVGKTAREDAVVVIWSMCCVYKD---AR---VKEA--  346 (398)
Q Consensus       280 ~~~~~al~~L~~La~~~~~~~~i-~~~~g~v~~Lv~~l~----~~~~~~~~~a~~~L~~l~~~~~~---~~---~~~~--  346 (398)
                      ..+..|+.+|..++...+|+..+ ....+.+..+++.+.    ++....+..++.+|.++-....+   ++   ..+.  
T Consensus       305 ~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~  384 (503)
T PF10508_consen  305 TIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWY  384 (503)
T ss_pred             hHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence            44477899999999999999999 544456666665554    36677899999999998543221   11   1111  


Q ss_pred             -HHhcCCHH-HHHHHHhhcCcHHHHHHHHHHHHHHhcCC
Q 015939          347 -VVNSNGLT-KLLLVMQSENEGIVRKMCGDLVKVLGKAS  383 (398)
Q Consensus       347 -~~~~g~~~-~Ll~~l~~~~~~~~k~~A~~lL~~l~~~~  383 (398)
                       ....+-.. .++.+++.. =+.+|-.|-.+|+.+..++
T Consensus       385 ~~~~~~~~~~~l~~~~~qP-F~elr~a~~~~l~~l~~~~  422 (503)
T PF10508_consen  385 ESLSGSPLSNLLMSLLKQP-FPELRCAAYRLLQALAAQP  422 (503)
T ss_pred             HHhcCCchHHHHHHHhcCC-chHHHHHHHHHHHHHhcCH
Confidence             12233344 455555543 4799999999999998854

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.34  E-value=2.1e-11  Score=97.99  Aligned_cols=115  Identities=20%  Similarity=0.212  Sum_probs=102.1

Q ss_pred             hhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCC-cchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC
Q 015939          216 VLETENLLSALFDYLKLAEDQALNDAILSILITLSVY-RSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT  294 (398)
Q Consensus       216 i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~  294 (398)
                      +.+ .|+++.|+++|.++ +++.+..++.+|.+++.+ ++.+..+++.|+++.++++|.+  .++.++..++++|.+|+.
T Consensus         3 ~~~-~~~i~~l~~~l~~~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~--~~~~v~~~a~~~L~~l~~   78 (120)
T cd00020           3 VIQ-AGGLPALVSLLSSS-DENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKS--EDEEVVKAALWALRNLAA   78 (120)
T ss_pred             HHH-cCChHHHHHHHHcC-CHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhC--CCHHHHHHHHHHHHHHcc
Confidence            344 78999999999998 789999999999999987 6788888899999999999954  689999999999999999


Q ss_pred             CHHHH-HHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhh
Q 015939          295 CSEGR-LALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMC  335 (398)
Q Consensus       295 ~~~~~-~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~  335 (398)
                      .+... ..+. ..|+++.+++++...+..+++.|+.+|.+|+
T Consensus        79 ~~~~~~~~~~-~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~  119 (120)
T cd00020          79 GPEDNKLIVL-EAGGVPKLVNLLDSSNEDIQKNATGALSNLA  119 (120)
T ss_pred             CcHHHHHHHH-HCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence            77544 4455 6799999999999999999999999999987

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.33  E-value=3.9e-10  Score=105.34  Aligned_cols=259  Identities=12%  Similarity=0.098  Sum_probs=202.6

Q ss_pred             HhhhhhhhhhhhhhcCCcHHHHHHHhhhccC-C----cHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHH
Q 015939          114 FATGCEANRRFLASYGGFVEAVFGVLNRKRR-S----EIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEIL  188 (398)
Q Consensus       114 l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~-~----~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL  188 (398)
                      -..+++..+-.+++. |.++.++.+++.-.+ .    .......+......+..+++.    -.+....+.++..+++.+
T Consensus       250 ~~aend~Vkl~la~~-gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeS----Mq~L~~~p~~l~~~~sw~  324 (604)
T KOG4500|consen  250 KAAENDLVKLSLAQN-GLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDES----MQKLHADPQFLDFLESWF  324 (604)
T ss_pred             HHhcCcceeeehhhc-chHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchH----HHHHhcCcHHHHHHHHHh
Confidence            334667788889999 999999999976211 1    122233444445555555553    233233445899999999


Q ss_pred             hcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccc----cCHHHHHHHHHHHHHhcCCcchHHHHHHcCC
Q 015939          189 REGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLA----EDQALNDAILSILITLSVYRSVKAQLVELGM  264 (398)
Q Consensus       189 ~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~----~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~  264 (398)
                      ++++......++.+|.|+++.++++..+++ .|.+..|+.+|...    .+.+.+.+++.+|+||..-..|+..+..+|.
T Consensus       325 ~S~d~~l~t~g~LaigNfaR~D~~ci~~v~-~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGv  403 (604)
T KOG4500|consen  325 RSDDSNLITMGSLAIGNFARRDDICIQLVQ-KDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGV  403 (604)
T ss_pred             cCCchhHHHHHHHHHHhhhccchHHHHHHH-HHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccch
Confidence            999999999999999999999999999998 89999999998642    3678899999999999999999999999999


Q ss_pred             hHHHHHHhcccCcchhhHHHHHHHHHHHhCCHH-HHHHHhhccCcHHHHHHHHhccChh-HHHHHHHHHHHhhccCCChh
Q 015939          265 VQILTRILSDSRTQILTVEKSIKMLSIVATCSE-GRLALSEEASCAGRVVERVMKVGKT-AREDAVVVIWSMCCVYKDAR  342 (398)
Q Consensus       265 v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~-~~~~i~~~~g~v~~Lv~~l~~~~~~-~~~~a~~~L~~l~~~~~~~~  342 (398)
                      +.+++.++.  ...|+++.+-+++|+.+-...+ ...++..+.-.+..||.+-++.+-. +.-..-+.|..+-+++...+
T Consensus       404 teaIL~~lk--~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkHs~~kd  481 (604)
T KOG4500|consen  404 TEAILLQLK--LASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKHSKYKD  481 (604)
T ss_pred             HHHHHHHHH--hcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHhhHhhh
Confidence            999999995  4789999999999999887655 6667776777788888888775443 66677888888888765457


Q ss_pred             HHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          343 VKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       343 ~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      +...+.+.|++..++..+-.+ .-..+..|.-.|-.++.
T Consensus       482 v~~tvpksg~ik~~Vsm~t~~-hi~mqnEalVal~~~~~  519 (604)
T KOG4500|consen  482 VILTVPKSGGIKEKVSMFTKN-HINMQNEALVALLSTES  519 (604)
T ss_pred             hHhhccccccHHHHHHHHHHh-hHHHhHHHHHHHHHHHH
Confidence            788889999999999888665 56677777665555544

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=99.33  E-value=8.9e-13  Score=111.61  Aligned_cols=62  Identities=24%  Similarity=0.428  Sum_probs=52.7

Q ss_pred             cCCCCcccccCccccCCCceecCCCcccchhHHHHHHhc---------------CCCCCCcccccCCCCCCcccHHH
Q 015939            8 IAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLES---------------GHDTCPATMQILSTKEFVPNLTL   69 (398)
Q Consensus         8 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~---------------~~~~CP~~~~~l~~~~l~~n~~l   69 (398)
                      .+...+|.||||.+.++|||+++|||.||+.||.+|+..               +...||.|+.++...+++|...-
T Consensus        13 ~~~~~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygr   89 (193)
T PLN03208         13 VDSGGDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGR   89 (193)
T ss_pred             ccCCCccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeecc
Confidence            356678999999999999999999999999999999742               23579999999998888887533

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.31  E-value=3.5e-11  Score=96.70  Aligned_cols=116  Identities=23%  Similarity=0.240  Sum_probs=104.2

Q ss_pred             hccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCc
Q 015939          175 LNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYR  253 (398)
Q Consensus       175 l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~  253 (398)
                      +.+.|+++.++++|++++.+.+..++.+|.+++.+ ++....+.. .|+++.|+.+|.++ ++.++..++++|++|+.+.
T Consensus         3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~~i~~l~~~l~~~-~~~v~~~a~~~L~~l~~~~   80 (120)
T cd00020           3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVE-AGGLPALVQLLKSE-DEEVVKAALWALRNLAAGP   80 (120)
T ss_pred             HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHH-CCChHHHHHHHhCC-CHHHHHHHHHHHHHHccCc
Confidence            44679999999999999999999999999999998 778888877 79999999999998 8999999999999999877


Q ss_pred             c-hHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC
Q 015939          254 S-VKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT  294 (398)
Q Consensus       254 ~-~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~  294 (398)
                      . ....+++.|+++.|++++.+  .+..+++.++++|.+|+.
T Consensus        81 ~~~~~~~~~~g~l~~l~~~l~~--~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          81 EDNKLIVLEAGGVPKLVNLLDS--SNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHHCCChHHHHHHHhc--CCHHHHHHHHHHHHHhhC
Confidence            4 56667799999999999954  688999999999999873

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>TIGR00599 rad18 DNA repair protein rad18

Probab=99.30  E-value=2.5e-12  Score=122.08  Aligned_cols=71  Identities=17%  Similarity=0.319  Sum_probs=64.4

Q ss_pred             ccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHHh
Q 015939            7 YIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSH   78 (398)
Q Consensus         7 ~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~   78 (398)
                      ...+..+|.||||.++|.+||+++|||+||..||.+|+.. ...||.|+..+....+.+|..+..+++.|..
T Consensus        20 l~~Le~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~-~~~CP~Cr~~~~~~~Lr~N~~L~~iVe~~~~   90 (397)
T TIGR00599        20 LYPLDTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSN-QPKCPLCRAEDQESKLRSNWLVSEIVESFKN   90 (397)
T ss_pred             ccccccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhC-CCCCCCCCCccccccCccchHHHHHHHHHHH
Confidence            3567788999999999999999999999999999999975 4589999999988889999999999999964

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.30  E-value=9.1e-10  Score=110.53  Aligned_cols=250  Identities=14%  Similarity=0.139  Sum_probs=194.5

Q ss_pred             HHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccch
Q 015939           87 VRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGV  166 (398)
Q Consensus        87 i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~  166 (398)
                      +..+++.|....    .+.+++..+.......+... .     ...+.+...|.+ .+  .+..+.++.+|..+......
T Consensus         5 ~~~~l~~l~~~~----~~~~~L~~l~~~~~~~~~l~-~-----~~~~~lf~~L~~-~~--~e~v~~~~~iL~~~l~~~~~   71 (503)
T PF10508_consen    5 INELLEELSSKA----ERLEALPELKTELSSSPFLE-R-----LPEPVLFDCLNT-SN--REQVELICDILKRLLSALSP   71 (503)
T ss_pred             HHHHHHHHhccc----chHHHHHHHHHHHhhhhHHH-h-----chHHHHHHHHhh-cC--hHHHHHHHHHHHHHHhccCH
Confidence            445666666552    57777877776543322111 1     122336777876 33  23346777777777654332


Q ss_pred             HHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHH
Q 015939          167 KEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSIL  246 (398)
Q Consensus       167 ~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL  246 (398)
                           .. + ..+..+.|...|.+.++.+|..+++.|.++..+.+....+....++++.++.+|.++ +.++.+.|+.+|
T Consensus        72 -----~~-l-~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~-d~~Va~~A~~~L  143 (503)
T PF10508_consen   72 -----DS-L-LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDP-DLSVAKAAIKAL  143 (503)
T ss_pred             -----HH-H-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCC-cHHHHHHHHHHH
Confidence                 11 1 467789999999999999999999999999988766555555589999999999999 899999999999


Q ss_pred             HHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChhHHH
Q 015939          247 ITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKTARE  325 (398)
Q Consensus       247 ~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~  325 (398)
                      .+|+..+.+...+++.+.+..|..++..  +++.++-+.+.++..++. +++....+. ..|.++.++..+.+.+..++.
T Consensus       144 ~~l~~~~~~~~~l~~~~~~~~L~~l~~~--~~~~vR~Rv~el~v~i~~~S~~~~~~~~-~sgll~~ll~eL~~dDiLvql  220 (503)
T PF10508_consen  144 KKLASHPEGLEQLFDSNLLSKLKSLMSQ--SSDIVRCRVYELLVEIASHSPEAAEAVV-NSGLLDLLLKELDSDDILVQL  220 (503)
T ss_pred             HHHhCCchhHHHHhCcchHHHHHHHHhc--cCHHHHHHHHHHHHHHHhcCHHHHHHHH-hccHHHHHHHHhcCccHHHHH
Confidence            9999998888888899999999999953  567788899999999987 556666666 679999999999999999999


Q ss_pred             HHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhc
Q 015939          326 DAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSE  363 (398)
Q Consensus       326 ~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~  363 (398)
                      +|+.+|..|+..   +.....+.+.|++++|...++..
T Consensus       221 nalell~~La~~---~~g~~yL~~~gi~~~L~~~l~~~  255 (503)
T PF10508_consen  221 NALELLSELAET---PHGLQYLEQQGIFDKLSNLLQDS  255 (503)
T ss_pred             HHHHHHHHHHcC---hhHHHHHHhCCHHHHHHHHHhcc
Confidence            999999999983   57788899999999999999554

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.28  E-value=6e-11  Score=123.83  Aligned_cols=227  Identities=15%  Similarity=0.112  Sum_probs=187.8

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChH
Q 015939          103 SCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLP  182 (398)
Q Consensus       103 ~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~  182 (398)
                      -+..|..+|.+|.-++..|+..+-...|+++.+|..|.+ .  ..+++.....+|.||+...+.   |-+.++.+.|-+.
T Consensus       367 LRrYa~MALTNLTFGDv~NKa~LCs~rgfMeavVAQL~s-~--peeL~QV~AsvLRNLSWRAD~---nmKkvLrE~GsVt  440 (2195)
T KOG2122|consen  367 LRRYAGMALTNLTFGDVANKATLCSQRGFMEAVVAQLIS-A--PEELLQVYASVLRNLSWRADS---NMKKVLRETGSVT  440 (2195)
T ss_pred             HHHHHHHHhhccccccccchhhhhhhhhHHHHHHHHHhc-C--hHHHHHHHHHHHHhccccccc---cHHHHHHhhhhHH
Confidence            456788899999988888988888777999999999988 2  224557777899999987765   2455588889888


Q ss_pred             HHHHHHh-cCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccc---cCHHHHHHHHHHHHHhcC----Cc
Q 015939          183 LFLEILR-EGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLA---EDQALNDAILSILITLSV----YR  253 (398)
Q Consensus       183 ~Lv~lL~-~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~---~~~~~~~~a~~aL~~Ls~----~~  253 (398)
                      .|+..-- ..........+.+|+||+-+ -+||..|....|++..||.+|.=.   ......+.+-.+|.|.++    ..
T Consensus       441 aLa~~al~~~kEsTLKavLSALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E  520 (2195)
T KOG2122|consen  441 ALAACALRNKKESTLKAVLSALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCE  520 (2195)
T ss_pred             HHHHHHHHhcccchHHHHHHHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccc
Confidence            8887654 44556677888999999988 789999998899999999999743   245678889999999864    55


Q ss_pred             chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHH
Q 015939          254 SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIW  332 (398)
Q Consensus       254 ~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~  332 (398)
                      +.|+.+-+.+.+..|+..|.  +.+--++-+++++|.||+. +++.++.+. +.|+|+.|-.++.+.....-+-++.+|.
T Consensus       521 ~yRQILR~~NCLq~LLQ~LK--S~SLTiVSNaCGTLWNLSAR~p~DQq~Lw-D~gAv~mLrnLIhSKhkMIa~GSaaALr  597 (2195)
T KOG2122|consen  521 DYRQILRRHNCLQTLLQHLK--SHSLTIVSNACGTLWNLSARSPEDQQMLW-DDGAVPMLRNLIHSKHKMIAMGSAAALR  597 (2195)
T ss_pred             hHHHHHHHhhHHHHHHHHhh--hcceEEeecchhhhhhhhcCCHHHHHHHH-hcccHHHHHHHHhhhhhhhhhhHHHHHH
Confidence            67777889999999999995  4678899999999999976 888888888 5699999999999988888899999999


Q ss_pred             HhhccC
Q 015939          333 SMCCVY  338 (398)
Q Consensus       333 ~l~~~~  338 (398)
                      ||..+-
T Consensus       598 NLln~R  603 (2195)
T KOG2122|consen  598 NLLNFR  603 (2195)
T ss_pred             HHhcCC
Confidence            988763

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.22  E-value=1.4e-09  Score=101.77  Aligned_cols=283  Identities=12%  Similarity=0.065  Sum_probs=210.8

Q ss_pred             HHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhc----cCCcHHHHHHHHHHHHhhhc
Q 015939           87 VRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRK----RRSEIAVLESAVRVLNLIVN  162 (398)
Q Consensus        87 i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~----~~~~~~~~~~al~~L~~l~~  162 (398)
                      ++.|.+..+|++.  +...+....|.++|.++.++|..+-+. |+-..++..|+..    .....+...-+...|.|...
T Consensus        89 le~Lrq~psS~d~--ev~~Q~~RaLgNiCydn~E~R~a~~~l-gGaqivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l  165 (604)
T KOG4500|consen   89 LELLRQTPSSPDT--EVHEQCFRALGNICYDNNENRAAFFNL-GGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYIL  165 (604)
T ss_pred             HHHHHhCCCCCcc--cHHHHHHHHHhhhhccCchhHHHHHhc-CCceehHhhhccccccCCccHHHHHHHHHHHHHHhhC
Confidence            3333333344433  478889999999999999999999999 9988888888763    11233555667778888887


Q ss_pred             ccchHHHhhHhhhccCCChHHHHHHHhcC--ChhhHHHHHHHHHHhhcC-ch-hHHHhhchhhHHHHHHHHhccccCHHH
Q 015939          163 ENGVKEKLNRLILNTYNCLPLFLEILREG--NLDSKIGSIKILDSISLD-NE-SKRRVLETENLLSALFDYLKLAEDQAL  238 (398)
Q Consensus       163 ~~~~~~~~~~~il~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~-~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~  238 (398)
                      +.+.   .+.. +.+.|+++.|...+.-+  +.+..+.......+|.+- -+ ...+..+ ......|+++|.....++.
T Consensus       166 ~~~~---l~aq-~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d-~sl~~~l~~ll~~~v~~d~  240 (604)
T KOG4500|consen  166 DSRE---LRAQ-VADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKD-CSLVFMLLQLLPSMVREDI  240 (604)
T ss_pred             CcHH---HHHH-HHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhcc-chHHHHHHHHHHHhhccch
Confidence            6654   4677 77999999999998755  556666666666666544 22 3445544 7788899999988767778


Q ss_pred             HHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcch-------hhHHHHHHHHHHHhCCHHHHHHHhhccCcHHH
Q 015939          239 NDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQI-------LTVEKSIKMLSIVATCSEGRLALSEEASCAGR  311 (398)
Q Consensus       239 ~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~-------~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~  311 (398)
                      .+-....|...+.++..+-.+++.|.+..++++++. ..+.       .....++.....|..+++.-+.+...+..+..
T Consensus       241 ~eM~feila~~aend~Vkl~la~~gl~e~~~~lv~~-~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~  319 (604)
T KOG4500|consen  241 DEMIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRN-MKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDF  319 (604)
T ss_pred             hhHHHHHHHHHhcCcceeeehhhcchHHHHHHHHHh-cccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHH
Confidence            888999999999999999999999999999999963 1122       22234444444555566666677645447889


Q ss_pred             HHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhh----cCcHHHHHHHHHHHHHHhc
Q 015939          312 VVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQS----ENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       312 Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~----~~~~~~k~~A~~lL~~l~~  381 (398)
                      ++.++.+.+....-.+.-++.|+++.   ++....+++.|.+.+|+..+..    +++.+.+..+..+||+|-=
T Consensus       320 ~~sw~~S~d~~l~t~g~LaigNfaR~---D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~I  390 (604)
T KOG4500|consen  320 LESWFRSDDSNLITMGSLAIGNFARR---DDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMI  390 (604)
T ss_pred             HHHHhcCCchhHHHHHHHHHHhhhcc---chHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccc
Confidence            99999988888888999999999974   5777889999999999999944    4566777777888888754

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.21  E-value=3.6e-09  Score=100.07  Aligned_cols=259  Identities=13%  Similarity=0.120  Sum_probs=171.4

Q ss_pred             HHHHHHHhhhhhhhhhhhhhc--CCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhcc------CC
Q 015939          108 LVKVAKFATGCEANRRFLASY--GGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNT------YN  179 (398)
Q Consensus       108 l~~L~~l~~~~~~~r~~i~~~--~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~------~g  179 (398)
                      +..+..+-+.....|..+.+.  ++....++++|+.. ..+.+++...+..+..+..+++..    ..++..      ..
T Consensus        31 ~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~~-~~~~d~v~yvL~li~dll~~~~~~----~~~~~~~~~~~~~~  105 (312)
T PF03224_consen   31 LSLIKKLDKQSKEERRELLEEDGDQYASLFLNLLNKL-SSNDDTVQYVLTLIDDLLSDDPSR----VELFLELAKQDDSD  105 (312)
T ss_dssp             HHHHHHHHHHHH-------------------HHHHHH----HHHHHHHHHHHHHHHH-SSSS----HHHHHHHHH-TTH-
T ss_pred             HHHHHHHHCCCHHHHHHHHHhchhhHHHHHHHHHHHc-cCcHHHHHHHHHHHHHHHhcCHHH----HHHHHHhcccccch
Confidence            344444444444445444443  13477788888873 244567899999999998877752    222221      23


Q ss_pred             ChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccc---cCHHHHHHHHHHHHHhcCCcchH
Q 015939          180 CLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLA---EDQALNDAILSILITLSVYRSVK  256 (398)
Q Consensus       180 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~---~~~~~~~~a~~aL~~Ls~~~~~~  256 (398)
                      ....+++++++++..++..|+.+|..|......+..-.. .+.++.++.+|++.   .+.+.+..++.+|.+|...++.|
T Consensus       106 ~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~-~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R  184 (312)
T PF03224_consen  106 PYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLV-KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYR  184 (312)
T ss_dssp             -HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHH-HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchH-HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhH
Confidence            788899999999999999999999999877544443322 46788888887753   24556799999999999999999


Q ss_pred             HHHHHcCChHHHHHHh-----cccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhc-cChhHHHHHHHH
Q 015939          257 AQLVELGMVQILTRIL-----SDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMK-VGKTAREDAVVV  330 (398)
Q Consensus       257 ~~~v~~g~v~~Lv~lL-----~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~-~~~~~~~~a~~~  330 (398)
                      ..+.+.|+++.++.++     .+...+..++-.++-++..|+-+++....+.. .+.|+.|+++++. ...++.+-++.+
T Consensus       185 ~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~L~~i~~~~~KEKvvRv~la~  263 (312)
T PF03224_consen  185 QVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNK-KYLIPLLADILKDSIKEKVVRVSLAI  263 (312)
T ss_dssp             HHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHT-TSHHHHHHHHHHH--SHHHHHHHHHH
T ss_pred             HHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhc-cchHHHHHHHHHhcccchHHHHHHHH
Confidence            9999999999999999     23456778889999999999999999999984 5799999999986 688999999999


Q ss_pred             HHHhhccCCChhHHHHHHhcCCHHHHHHHH-hhcCcHHHHHHHHH
Q 015939          331 IWSMCCVYKDARVKEAVVNSNGLTKLLLVM-QSENEGIVRKMCGD  374 (398)
Q Consensus       331 L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l-~~~~~~~~k~~A~~  374 (398)
                      |.|+..... ......|+..|+++.+-.+. +...++++.+--..
T Consensus       264 l~Nl~~~~~-~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~  307 (312)
T PF03224_consen  264 LRNLLSKAP-KSNIELMVLCGLLKTLQNLSERKWSDEDLTEDLEF  307 (312)
T ss_dssp             HHHTTSSSS-TTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHHHH
T ss_pred             HHHHHhccH-HHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHHHH
Confidence            999997643 34888888887777554444 33456666654433

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.19  E-value=9.5e-09  Score=102.47  Aligned_cols=285  Identities=15%  Similarity=0.164  Sum_probs=213.3

Q ss_pred             HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939           84 EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE  163 (398)
Q Consensus        84 ~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~  163 (398)
                      .+.|+.|+.++.++.. .+.++.|+..|..+++.   +|..++.  .+.++|+..|.. ...+++....++.++.++..+
T Consensus        21 aETI~kLcDRvessTL-~eDRR~A~rgLKa~srk---YR~~Vga--~Gmk~li~vL~~-D~~D~E~ik~~LdTl~il~~~   93 (970)
T KOG0946|consen   21 AETIEKLCDRVESSTL-LEDRRDAVRGLKAFSRK---YREEVGA--QGMKPLIQVLQR-DYMDPEIIKYALDTLLILTSH   93 (970)
T ss_pred             HhHHHHHHHHHhhccc-hhhHHHHHHHHHHHHHH---HHHHHHH--cccHHHHHHHhh-ccCCHHHHHHHHHHHHHHHhc
Confidence            6789999999988766 56999999999999966   8888886  568999999987 556778889999999999887


Q ss_pred             cc------hH-------HHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC--chhHHHhhchhhHHHHHHH
Q 015939          164 NG------VK-------EKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD--NESKRRVLETENLLSALFD  228 (398)
Q Consensus       164 ~~------~~-------~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~  228 (398)
                      ++      +.       +..-...+...+.|..|+..+...+..+|..++..|.+|...  .+.+..+...+-+|..|+.
T Consensus        94 dd~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmd  173 (970)
T KOG0946|consen   94 DDSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMD  173 (970)
T ss_pred             CcchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHH
Confidence            64      11       111123345789999999999999999999999999988766  5777777766889999999


Q ss_pred             HhccccCHHHHHHHHHHHHHhcCCcchHHHHH-HcCChHHHHHHhcccC--cchhhHHHHHHHHHHHhCCH-HHHHHHhh
Q 015939          229 YLKLAEDQALNDAILSILITLSVYRSVKAQLV-ELGMVQILTRILSDSR--TQILTVEKSIKMLSIVATCS-EGRLALSE  304 (398)
Q Consensus       229 lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v-~~g~v~~Lv~lL~~~~--~~~~~~~~al~~L~~La~~~-~~~~~i~~  304 (398)
                      +|.+. ....+..++-.|..|+.+..+.+++| =.+++..|.+++....  ...-|++.|+..|-||.++. .+++-+. 
T Consensus       174 lL~Ds-rE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~Fr-  251 (970)
T KOG0946|consen  174 LLRDS-REPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFR-  251 (970)
T ss_pred             HHhhh-hhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHh-
Confidence            99998 55589999999999999888888877 5789999999996322  23368899999999999855 5666666 


Q ss_pred             ccCcHHHHHHHHhc---cChhH----------HHHHHHHHHHhhccCCC----hhHHHHHHhcCCHHHHHHHHhhcC-cH
Q 015939          305 EASCAGRVVERVMK---VGKTA----------REDAVVVIWSMCCVYKD----ARVKEAVVNSNGLTKLLLVMQSEN-EG  366 (398)
Q Consensus       305 ~~g~v~~Lv~~l~~---~~~~~----------~~~a~~~L~~l~~~~~~----~~~~~~~~~~g~~~~Ll~~l~~~~-~~  366 (398)
                      ..+.||.|.++|..   ++.++          -..|+.++..+..-+..    ..+...+.+.+++..|+.++-..+ ..
T Consensus       252 E~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~  331 (970)
T KOG0946|consen  252 EGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPA  331 (970)
T ss_pred             ccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcH
Confidence            56899999988754   33211          12334444443321111    234467788999999999886553 23


Q ss_pred             HHHHHHHHHHH
Q 015939          367 IVRKMCGDLVK  377 (398)
Q Consensus       367 ~~k~~A~~lL~  377 (398)
                      .++.-+...+.
T Consensus       332 dIltesiitvA  342 (970)
T KOG0946|consen  332 DILTESIITVA  342 (970)
T ss_pred             hHHHHHHHHHH
Confidence            45544443333

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=99.16  E-value=1.9e-11  Score=77.53  Aligned_cols=38  Identities=34%  Similarity=0.785  Sum_probs=33.2

Q ss_pred             ccCccccCCCc-eecCCCcccchhHHHHHHhcCCCCCCcc
Q 015939           16 CPISLDVMKSP-VSLCTGVTYDRSSIQHWLESGHDTCPAT   54 (398)
Q Consensus        16 Cpi~~~~~~dP-v~~~~g~~~~r~~i~~~~~~~~~~CP~~   54 (398)
                      ||||.+.+.|| |+++|||+||+.||++|++. ...||.|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~-~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEK-NPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHC-TSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCchhHHHHHHHHHC-cCCCcCC
Confidence            89999999999 67899999999999999987 6789986

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.13  E-value=1e-09  Score=103.84  Aligned_cols=196  Identities=18%  Similarity=0.284  Sum_probs=158.9

Q ss_pred             HHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHH
Q 015939          147 IAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSAL  226 (398)
Q Consensus       147 ~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~L  226 (398)
                      .+++..|+..|.|++.+-...    .. +.....+..||+.|+.++.+........|..|+..++||..++. .|.+..|
T Consensus       277 eqLLrva~ylLlNlAed~~~E----lK-MrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~eNK~~M~~-~~iveKL  350 (791)
T KOG1222|consen  277 EQLLRVAVYLLLNLAEDISVE----LK-MRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFDENKIVMEQ-NGIVEKL  350 (791)
T ss_pred             HHHHHHHHHHHHHHhhhhhHH----HH-HHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhccchHHHHh-ccHHHHH
Confidence            356677888899998765542    22 55668899999999999999999999999999999999999998 8999999


Q ss_pred             HHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhcc
Q 015939          227 FDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEA  306 (398)
Q Consensus       227 v~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~  306 (398)
                      +++.... +++++...+..|.||+.+..++.+||..|.+|.|+.+|.    +..-..-|+.+|..++.++..+..+. ..
T Consensus       351 ~klfp~~-h~dL~~~tl~LlfNlSFD~glr~KMv~~GllP~l~~ll~----~d~~~~iA~~~lYh~S~dD~~K~Mfa-yT  424 (791)
T KOG1222|consen  351 LKLFPIQ-HPDLRKATLMLLFNLSFDSGLRPKMVNGGLLPHLASLLD----SDTKHGIALNMLYHLSCDDDAKAMFA-YT  424 (791)
T ss_pred             HHhcCCC-CHHHHHHHHHHhhhccccccccHHHhhccchHHHHHHhC----CcccchhhhhhhhhhccCcHHHHHHH-HH
Confidence            9999998 899999999999999999999999999999999999994    33344568999999999888888887 56


Q ss_pred             CcHHHHHHHHhcc-ChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHH
Q 015939          307 SCAGRVVERVMKV-GKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLL  357 (398)
Q Consensus       307 g~v~~Lv~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll  357 (398)
                      .+|+.+.+.+..+ +.++...-+..-.|+|.+   .+..+.+++..++..|.
T Consensus       425 dci~~lmk~v~~~~~~~vdl~lia~ciNl~ln---kRNaQlvceGqgL~~LM  473 (791)
T KOG1222|consen  425 DCIKLLMKDVLSGTGSEVDLALIALCINLCLN---KRNAQLVCEGQGLDLLM  473 (791)
T ss_pred             HHHHHHHHHHHhcCCceecHHHHHHHHHHHhc---cccceEEecCcchHHHH
Confidence            8999999988764 344444444444678865   45666666666666554

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=99.10  E-value=3.4e-11  Score=77.03  Aligned_cols=36  Identities=25%  Similarity=0.609  Sum_probs=23.2

Q ss_pred             ccCccccCCC----ceecCCCcccchhHHHHHHhcC---CCCCC
Q 015939           16 CPISLDVMKS----PVSLCTGVTYDRSSIQHWLESG---HDTCP   52 (398)
Q Consensus        16 Cpi~~~~~~d----Pv~~~~g~~~~r~~i~~~~~~~---~~~CP   52 (398)
                      ||||++ |.+    |++|+|||+||++||+++++.+   ...||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            999999 999    9999999999999999999754   34577

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.08  E-value=8.3e-09  Score=97.80  Aligned_cols=256  Identities=11%  Similarity=0.128  Sum_probs=177.9

Q ss_pred             HHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchH
Q 015939           88 RVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVK  167 (398)
Q Consensus        88 ~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~  167 (398)
                      ..|++.|.-++.+  -..-...=|..++- -.+|+..+.+. |.|+.|+.++.. ..  +.++...+..|.|++.+... 
T Consensus       307 ~mLVKaLdr~n~~--Ll~lv~~FLkKLSI-f~eNK~~M~~~-~iveKL~klfp~-~h--~dL~~~tl~LlfNlSFD~gl-  378 (791)
T KOG1222|consen  307 AMLVKALDRSNSS--LLTLVIKFLKKLSI-FDENKIVMEQN-GIVEKLLKLFPI-QH--PDLRKATLMLLFNLSFDSGL-  378 (791)
T ss_pred             HHHHHHHcccchH--HHHHHHHHHHHhhh-hccchHHHHhc-cHHHHHHHhcCC-CC--HHHHHHHHHHhhhccccccc-
Confidence            3455555544442  22222333444443 36789999999 999999999987 33  45668899999999998775 


Q ss_pred             HHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHH
Q 015939          168 EKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILI  247 (398)
Q Consensus       168 ~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~  247 (398)
                         |.. ++..|.+|.|+.+|.+.+.  +.-|..+|..++.+++.|..+.. ..+|+.|.+.+-.+.+.++-.+.+..-.
T Consensus       379 ---r~K-Mv~~GllP~l~~ll~~d~~--~~iA~~~lYh~S~dD~~K~Mfay-Tdci~~lmk~v~~~~~~~vdl~lia~ci  451 (791)
T KOG1222|consen  379 ---RPK-MVNGGLLPHLASLLDSDTK--HGIALNMLYHLSCDDDAKAMFAY-TDCIKLLMKDVLSGTGSEVDLALIALCI  451 (791)
T ss_pred             ---cHH-HhhccchHHHHHHhCCccc--chhhhhhhhhhccCcHHHHHHHH-HHHHHHHHHHHHhcCCceecHHHHHHHH
Confidence               666 7899999999999987653  34578899999999999999987 7899999987665535445444444445


Q ss_pred             HhcCCcchHHHHHHcCChHHHH-------------------------------------HHhcccCcchhhHHHHHHHHH
Q 015939          248 TLSVYRSVKAQLVELGMVQILT-------------------------------------RILSDSRTQILTVEKSIKMLS  290 (398)
Q Consensus       248 ~Ls~~~~~~~~~v~~g~v~~Lv-------------------------------------~lL~~~~~~~~~~~~al~~L~  290 (398)
                      |||.+..|.+.+++-.++..|+                                     .+++ .+.+.+..-.|+++|.
T Consensus       452 Nl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRniSqHeg~tqn~FidyvgdLa~i~~-nd~~E~F~~EClGtla  530 (791)
T KOG1222|consen  452 NLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRNISQHEGATQNMFIDYVGDLAGIAK-NDNSESFGLECLGTLA  530 (791)
T ss_pred             HHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHHhhhccchHHHHHHHHHHHHHHHhh-cCchHHHHHHHHHHHh
Confidence            7777766665555544444333                                     3332 1345566778999999


Q ss_pred             HHhCCHHHHHHHhhccCcHHHHHHHHhcc--ChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhh
Q 015939          291 IVATCSEGRLALSEEASCAGRVVERVMKV--GKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQS  362 (398)
Q Consensus       291 ~La~~~~~~~~i~~~~g~v~~Lv~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~  362 (398)
                      ||...+-.-..|......||-+-..|+.+  .+..+-..+-.+..+++   +..+......+|+++.++.+|+.
T Consensus       531 nL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~---d~~cA~Lla~a~~i~tlieLL~a  601 (791)
T KOG1222|consen  531 NLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMAR---DLDCARLLAPAKLIDTLIELLQA  601 (791)
T ss_pred             hcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhh---hhHHHHHhCccccHHHHHHHHHh
Confidence            99886666666766677888777777753  22333333434444444   46788888899999999999965

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=99.08  E-value=4.6e-11  Score=81.70  Aligned_cols=44  Identities=27%  Similarity=0.685  Sum_probs=31.5

Q ss_pred             CcccccCccccCCCceec-CCCcccchhHHHHHHhc-CCCCCCccc
Q 015939           12 NLFRCPISLDVMKSPVSL-CTGVTYDRSSIQHWLES-GHDTCPATM   55 (398)
Q Consensus        12 ~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~-~~~~CP~~~   55 (398)
                      ..++||||++.|+|||+. .|||+|+|++|.+|+.. +...||+.+
T Consensus        10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv~G   55 (57)
T PF11789_consen   10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPVAG   55 (57)
T ss_dssp             --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SCCC
T ss_pred             eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCCCC
Confidence            468999999999999997 69999999999999943 345799965

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.05  E-value=5.2e-09  Score=98.97  Aligned_cols=210  Identities=14%  Similarity=0.154  Sum_probs=151.8

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhhhhcC-----CcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhcc
Q 015939          103 SCVDYLVKVAKFATGCEANRRFLASYG-----GFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNT  177 (398)
Q Consensus       103 ~~~~al~~L~~l~~~~~~~r~~i~~~~-----g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~  177 (398)
                      .....+.-+..+..+++...+.+....     ....++++++.+ +  +..+...|+..|..+....+..    .. -..
T Consensus        73 ~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~-~--D~~i~~~a~~iLt~Ll~~~~~~----~~-~~~  144 (312)
T PF03224_consen   73 TVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDR-N--DSFIQLKAAFILTSLLSQGPKR----SE-KLV  144 (312)
T ss_dssp             HHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S--S--SHHHHHHHHHHHHHHHTSTTT------H-HHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcC-C--CHHHHHHHHHHHHHHHHcCCcc----cc-chH
Confidence            666777788888888776666655521     246777787776 4  4456699999999998776652    11 111


Q ss_pred             CCChHHHHHHHhcC----ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHh------ccccCHHHHHHHHHHHH
Q 015939          178 YNCLPLFLEILREG----NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYL------KLAEDQALNDAILSILI  247 (398)
Q Consensus       178 ~g~i~~Lv~lL~~~----~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL------~~~~~~~~~~~a~~aL~  247 (398)
                      .+.++.+++.|.+.    +.+.+..|+.+|.+|...+++|..+.+ .|+++.|+.+|      .+..+.+.+-.++-++|
T Consensus       145 ~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~-~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lW  223 (312)
T PF03224_consen  145 KEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWK-SNGVSPLFDILRKQATNSNSSGIQLQYQALLCLW  223 (312)
T ss_dssp             HHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHT-HHHHHHHHHHHH---------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHh-cCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHH
Confidence            45678888888753    456678899999999999999999999 89999999999      44457788999999999


Q ss_pred             HhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHH--HHHHHhhccCcHHHHHHHHhc---cChh
Q 015939          248 TLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSE--GRLALSEEASCAGRVVERVMK---VGKT  322 (398)
Q Consensus       248 ~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~--~~~~i~~~~g~v~~Lv~~l~~---~~~~  322 (398)
                      -|+.+++....+...+.|+.|+++++. ...+++++-++++|+||...+.  ....++. .|+++ +++.|..   ++++
T Consensus       224 lLSF~~~~~~~~~~~~~i~~L~~i~~~-~~KEKvvRv~la~l~Nl~~~~~~~~~~~mv~-~~~l~-~l~~L~~rk~~Ded  300 (312)
T PF03224_consen  224 LLSFEPEIAEELNKKYLIPLLADILKD-SIKEKVVRVSLAILRNLLSKAPKSNIELMVL-CGLLK-TLQNLSERKWSDED  300 (312)
T ss_dssp             HHTTSHHHHHHHHTTSHHHHHHHHHHH---SHHHHHHHHHHHHHTTSSSSTTHHHHHHH-H-HHH-HHHHHHSS--SSHH
T ss_pred             HHhcCHHHHHHHhccchHHHHHHHHHh-cccchHHHHHHHHHHHHHhccHHHHHHHHHH-ccHHH-HHHHHhcCCCCCHH
Confidence            999999999999999999999999984 5688999999999999998665  7777773 35444 4444543   4444


Q ss_pred             HH
Q 015939          323 AR  324 (398)
Q Consensus       323 ~~  324 (398)
                      ..
T Consensus       301 l~  302 (312)
T PF03224_consen  301 LT  302 (312)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PRK09687 putative lyase; Provisional

Probab=99.03  E-value=9.1e-08  Score=88.63  Aligned_cols=224  Identities=11%  Similarity=0.007  Sum_probs=152.2

Q ss_pred             HHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccch
Q 015939           87 VRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGV  166 (398)
Q Consensus        87 i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~  166 (398)
                      +..+.+.+.+.+.  ..+..|++.|..+......      .. -+++.|..++..  +++..++..|+.+|..+......
T Consensus        56 ~~~l~~ll~~~d~--~vR~~A~~aLg~lg~~~~~------~~-~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~  124 (280)
T PRK09687         56 FRLAIELCSSKNP--IERDIGADILSQLGMAKRC------QD-NVFNILNNLALE--DKSACVRASAINATGHRCKKNPL  124 (280)
T ss_pred             HHHHHHHHhCCCH--HHHHHHHHHHHhcCCCccc------hH-HHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccc
Confidence            3444444444443  3677777777776532110      11 356666666443  34456778888888887532221


Q ss_pred             HHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHH
Q 015939          167 KEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSIL  246 (398)
Q Consensus       167 ~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL  246 (398)
                               .....+..+...+.+.+..+|..++.+|..+          .. ..+++.|+.+|++. ++.++..|+.+|
T Consensus       125 ---------~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----------~~-~~ai~~L~~~L~d~-~~~VR~~A~~aL  183 (280)
T PRK09687        125 ---------YSPKIVEQSQITAFDKSTNVRFAVAFALSVI----------ND-EAAIPLLINLLKDP-NGDVRNWAAFAL  183 (280)
T ss_pred             ---------cchHHHHHHHHHhhCCCHHHHHHHHHHHhcc----------CC-HHHHHHHHHHhcCC-CHHHHHHHHHHH
Confidence                     1223456677777777888998888888543          23 55789999999988 888999999999


Q ss_pred             HHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHH
Q 015939          247 ITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTARED  326 (398)
Q Consensus       247 ~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~  326 (398)
                      ..+....+        .+++.|+.+|.  +.+..++..|...|..+-           +..+++.|++.+.+++  ++..
T Consensus       184 g~~~~~~~--------~~~~~L~~~L~--D~~~~VR~~A~~aLg~~~-----------~~~av~~Li~~L~~~~--~~~~  240 (280)
T PRK09687        184 NSNKYDNP--------DIREAFVAMLQ--DKNEEIRIEAIIGLALRK-----------DKRVLSVLIKELKKGT--VGDL  240 (280)
T ss_pred             hcCCCCCH--------HHHHHHHHHhc--CCChHHHHHHHHHHHccC-----------ChhHHHHHHHHHcCCc--hHHH
Confidence            98832222        36788999994  478889999998887753           2357888888888655  5667


Q ss_pred             HHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 015939          327 AVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKV  378 (398)
Q Consensus       327 a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~  378 (398)
                      |+.+|..+..    +         -+++.|..+++.+.+.+++.+|.+.|+.
T Consensus       241 a~~ALg~ig~----~---------~a~p~L~~l~~~~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        241 IIEAAGELGD----K---------TLLPVLDTLLYKFDDNEIITKAIDKLKR  279 (280)
T ss_pred             HHHHHHhcCC----H---------hHHHHHHHHHhhCCChhHHHHHHHHHhc
Confidence            7777766653    1         3678899999766699999999888763

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.03  E-value=1.9e-10  Score=73.91  Aligned_cols=39  Identities=41%  Similarity=0.887  Sum_probs=35.9

Q ss_pred             ccCccccCCCce-ecCCCcccchhHHHHHHh-cCCCCCCcc
Q 015939           16 CPISLDVMKSPV-SLCTGVTYDRSSIQHWLE-SGHDTCPAT   54 (398)
Q Consensus        16 Cpi~~~~~~dPv-~~~~g~~~~r~~i~~~~~-~~~~~CP~~   54 (398)
                      ||||.+.+.+|+ +++|||+||+.||.+|++ .+...||.|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            899999999999 899999999999999998 556779986

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=98.99  E-value=1.8e-10  Score=78.59  Aligned_cols=60  Identities=28%  Similarity=0.494  Sum_probs=34.1

Q ss_pred             CCcccccCccccCCCceec-CCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHH
Q 015939           11 PNLFRCPISLDVMKSPVSL-CTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLI   73 (398)
Q Consensus        11 ~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i   73 (398)
                      .+-+.|++|.++|++||.+ .|.|.||+.||.+.+..   .||+|+.+-...|+..|..|..+|
T Consensus         5 e~lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~~---~CPvC~~Paw~qD~~~NrqLd~~i   65 (65)
T PF14835_consen    5 EELLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIGS---ECPVCHTPAWIQDIQINRQLDSMI   65 (65)
T ss_dssp             HHTTS-SSS-S--SS-B---SSS--B-TTTGGGGTTT---B-SSS--B-S-SS----HHHHHHH
T ss_pred             HHhcCCcHHHHHhcCCceeccCccHHHHHHhHHhcCC---CCCCcCChHHHHHHHhhhhhhccC
Confidence            3457899999999999975 69999999999887653   499999999999999999888765

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=98.92  E-value=4.6e-10  Score=101.03  Aligned_cols=65  Identities=18%  Similarity=0.405  Sum_probs=60.4

Q ss_pred             CcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHH
Q 015939           12 NLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWS   77 (398)
Q Consensus        12 ~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~   77 (398)
                      .-+.|-||.++|+-||++|||||||.-||.+++.. .+.||.|..+++..+++.|..+.++++.+.
T Consensus        22 ~lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~-~p~CP~C~~~~~Es~Lr~n~il~Eiv~S~~   86 (442)
T KOG0287|consen   22 DLLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSY-KPQCPTCCVTVTESDLRNNRILDEIVKSLN   86 (442)
T ss_pred             HHHHHhHHHHHhcCceeccccchHHHHHHHHHhcc-CCCCCceecccchhhhhhhhHHHHHHHHHH
Confidence            45689999999999999999999999999999985 889999999999999999999999998875

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.88  E-value=1.2e-09  Score=73.40  Aligned_cols=47  Identities=21%  Similarity=0.364  Sum_probs=40.9

Q ss_pred             CcccccCccccCCCceecCCCcc-cchhHHHHHHhcCCCCCCcccccCC
Q 015939           12 NLFRCPISLDVMKSPVSLCTGVT-YDRSSIQHWLESGHDTCPATMQILS   59 (398)
Q Consensus        12 ~~~~Cpi~~~~~~dPv~~~~g~~-~~r~~i~~~~~~~~~~CP~~~~~l~   59 (398)
                      +++.|+||.+-+.++++++|||. ||..|+.+|+. ....||.||+++.
T Consensus         1 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    1 EDEECPICFENPRDVVLLPCGHLCFCEECAERLLK-RKKKCPICRQPIE   48 (50)
T ss_dssp             -HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHH-TTSBBTTTTBB-S
T ss_pred             CcCCCccCCccCCceEEeCCCChHHHHHHhHHhcc-cCCCCCcCChhhc
Confidence            46789999999999999999999 99999999998 4778999998864

...

>PRK09687 putative lyase; Provisional

Probab=98.86  E-value=3.6e-07  Score=84.70  Aligned_cols=225  Identities=8%  Similarity=0.012  Sum_probs=160.4

Q ss_pred             HHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccch
Q 015939           87 VRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGV  166 (398)
Q Consensus        87 i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~  166 (398)
                      +..|+..|.+.+..  .+..|+..|..+-.           . .+++.+..++.+ .  +..++..|+++|..+-.....
T Consensus        25 ~~~L~~~L~d~d~~--vR~~A~~aL~~~~~-----------~-~~~~~l~~ll~~-~--d~~vR~~A~~aLg~lg~~~~~   87 (280)
T PRK09687         25 DDELFRLLDDHNSL--KRISSIRVLQLRGG-----------Q-DVFRLAIELCSS-K--NPIERDIGADILSQLGMAKRC   87 (280)
T ss_pred             HHHHHHHHhCCCHH--HHHHHHHHHHhcCc-----------c-hHHHHHHHHHhC-C--CHHHHHHHHHHHHhcCCCccc
Confidence            55677788777654  78888888876642           2 567777887776 3  456679999999987542211


Q ss_pred             HHHhhHhhhccCCChHHHHHH-HhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHH
Q 015939          167 KEKLNRLILNTYNCLPLFLEI-LREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSI  245 (398)
Q Consensus       167 ~~~~~~~il~~~g~i~~Lv~l-L~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~a  245 (398)
                                ....++.|..+ ++..++.+|..|+.+|..+.......    . ..++..+...+.+. ++.++..++.+
T Consensus        88 ----------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~-~~a~~~l~~~~~D~-~~~VR~~a~~a  151 (280)
T PRK09687         88 ----------QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----S-PKIVEQSQITAFDK-STNVRFAVAFA  151 (280)
T ss_pred             ----------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----c-hHHHHHHHHHhhCC-CHHHHHHHHHH
Confidence                      12357888877 55668999999999999986443211    1 34567778888888 88999999999


Q ss_pred             HHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHH
Q 015939          246 LITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTARE  325 (398)
Q Consensus       246 L~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~  325 (398)
                      |..+.          +..+++.|+.+|.  ++++.+...|+.+|..+...         ++.+++.|+..+.+.+..++.
T Consensus       152 Lg~~~----------~~~ai~~L~~~L~--d~~~~VR~~A~~aLg~~~~~---------~~~~~~~L~~~L~D~~~~VR~  210 (280)
T PRK09687        152 LSVIN----------DEAAIPLLINLLK--DPNGDVRNWAAFALNSNKYD---------NPDIREAFVAMLQDKNEEIRI  210 (280)
T ss_pred             HhccC----------CHHHHHHHHHHhc--CCCHHHHHHHHHHHhcCCCC---------CHHHHHHHHHHhcCCChHHHH
Confidence            96543          2238899999995  47788999999999988321         234566788889999999999


Q ss_pred             HHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          326 DAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       326 ~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      .|+..|..+-.    +         -+++.|+..++.+ +  .+..|...|..+..
T Consensus       211 ~A~~aLg~~~~----~---------~av~~Li~~L~~~-~--~~~~a~~ALg~ig~  250 (280)
T PRK09687        211 EAIIGLALRKD----K---------RVLSVLIKELKKG-T--VGDLIIEAAGELGD  250 (280)
T ss_pred             HHHHHHHccCC----h---------hHHHHHHHHHcCC-c--hHHHHHHHHHhcCC
Confidence            99998866432    2         3666777777654 2  45566666666554

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.83  E-value=3.2e-07  Score=84.94  Aligned_cols=187  Identities=15%  Similarity=0.190  Sum_probs=150.3

Q ss_pred             CCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhH
Q 015939          144 RSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENL  222 (398)
Q Consensus       144 ~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~  222 (398)
                      ..+.+-.+.|+.-|..++.+-+.    -.. +...|+...++..|.+++.++|+.|+++|...+.+ +.....+.+ .|+
T Consensus        94 s~~le~ke~ald~Le~lve~iDn----And-l~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E-~~~  167 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELVEDIDN----AND-LISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIE-LGA  167 (342)
T ss_pred             cCCHHHHHHHHHHHHHHHHhhhh----HHh-HhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHH-ccc
Confidence            34455568888888777755443    233 66788888999999999999999999999999887 778888887 889


Q ss_pred             HHHHHHHhccccCHHHHHHHHHHHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHH
Q 015939          223 LSALFDYLKLAEDQALNDAILSILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLA  301 (398)
Q Consensus       223 i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~  301 (398)
                      ++.|+..|.+..+..++..|+-|+++|-.+. .....+...++...|..+|++++.+...+.+++-.+..|.........
T Consensus       168 L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d  247 (342)
T KOG2160|consen  168 LSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDED  247 (342)
T ss_pred             HHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhh
Confidence            9999999997756667799999999998766 477778899999999999986567889999999999999874443333


Q ss_pred             HhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhc
Q 015939          302 LSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCC  336 (398)
Q Consensus       302 i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~  336 (398)
                      +....|....++.+....+....++++..+..+..
T Consensus       248 ~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  248 IASSLGFQRVLENLISSLDFEVNEAALTALLSLLS  282 (342)
T ss_pred             HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence            55455777777777777889999999988877654

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.82  E-value=2.6e-09  Score=94.77  Aligned_cols=49  Identities=14%  Similarity=0.289  Sum_probs=41.4

Q ss_pred             CCCcccccCccccCCCc--------eecCCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939           10 VPNLFRCPISLDVMKSP--------VSLCTGVTYDRSSIQHWLESGHDTCPATMQILS   59 (398)
Q Consensus        10 ~~~~~~Cpi~~~~~~dP--------v~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~   59 (398)
                      ...+..||||.+.+.+|        ++.+|||+||+.||.+|... ..+||.||.++.
T Consensus       171 ~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~-~~tCPlCR~~~~  227 (238)
T PHA02929        171 RSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKE-KNTCPVCRTPFI  227 (238)
T ss_pred             CCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhc-CCCCCCCCCEee
Confidence            34567899999988764        56789999999999999874 679999998765

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.81  E-value=3e-06  Score=82.12  Aligned_cols=265  Identities=15%  Similarity=0.110  Sum_probs=178.8

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChH
Q 015939          103 SCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLP  182 (398)
Q Consensus       103 ~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~  182 (398)
                      ....|...|..+...+..+....... -....|...|++ .+ +...+.-++.+|..|...++.    |.. +.+.++++
T Consensus       117 i~~~a~~iLt~l~~~~~~~~~~~~l~-~~~~~l~~~l~~-~~-~~~~~~~~v~~L~~LL~~~~~----R~~-f~~~~~v~  188 (429)
T cd00256         117 IVHMSFSILAKLACFGLAKMEGSDLD-YYFNWLKEQLNN-IT-NNDYVQTAARCLQMLLRVDEY----RFA-FVLADGVP  188 (429)
T ss_pred             HHHHHHHHHHHHHhcCccccchhHHH-HHHHHHHHHhhc-cC-CcchHHHHHHHHHHHhCCchH----HHH-HHHccCHH
Confidence            45566666776665444321111100 123344445544 22 234457788899888877665    555 66777999


Q ss_pred             HHHHHHhcC--ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCc-------
Q 015939          183 LFLEILREG--NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYR-------  253 (398)
Q Consensus       183 ~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-------  253 (398)
                      .|+.+|+..  +.+.+-+++.+++-|+.+++....... .+.|+.|+++++...-.++.+-++.+|.||....       
T Consensus       189 ~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~-~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~  267 (429)
T cd00256         189 TLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKR-LSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKK  267 (429)
T ss_pred             HHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhcc-ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhh
Confidence            999999864  568889999999999999877776665 8999999999998767889999999999997632       


Q ss_pred             chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHH-------HHHhCCH------------------------HHHHHH
Q 015939          254 SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKML-------SIVATCS------------------------EGRLAL  302 (398)
Q Consensus       254 ~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L-------~~La~~~------------------------~~~~~i  302 (398)
                      .....|++.|..+.+-.+....=+|+++.+.--.+-       ..+++-+                        +|...+
T Consensus       268 ~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf  347 (429)
T cd00256         268 TAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRL  347 (429)
T ss_pred             hHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHH
Confidence            345667888776655555543335666654322222       2233222                        333344


Q ss_pred             hhcc-CcHHHHHHHHhc-cChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHH
Q 015939          303 SEEA-SCAGRVVERVMK-VGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVL  379 (398)
Q Consensus       303 ~~~~-g~v~~Lv~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l  379 (398)
                      .++. -.+..|+++|.. .++.+..-|+.=+..++.+.  +.-+..+-+.|+=..+..+|... ++++|..|..+++.+
T Consensus       348 ~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~--P~gr~i~~~lg~K~~vM~Lm~h~-d~~Vr~eAL~avQkl  423 (429)
T cd00256         348 NEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHY--PRGKDVVEQLGGKQRVMRLLNHE-DPNVRYEALLAVQKL  423 (429)
T ss_pred             HhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHC--ccHHHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence            3322 246888888854 56666777777778888775  46667777899988888888866 899999998888765

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.80  E-value=2.3e-09  Score=69.92  Aligned_cols=40  Identities=35%  Similarity=0.812  Sum_probs=34.5

Q ss_pred             cccCccccC---CCceecCCCcccchhHHHHHHhcCCCCCCccc
Q 015939           15 RCPISLDVM---KSPVSLCTGVTYDRSSIQHWLESGHDTCPATM   55 (398)
Q Consensus        15 ~Cpi~~~~~---~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~   55 (398)
                      .||||.+.|   ..++.++|||.|+++||.+|+.. ..+||.||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~-~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKR-NNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHH-SSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHh-CCcCCccC
Confidence            499999999   46788899999999999999986 56999996

...

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.80  E-value=3.3e-09  Score=100.78  Aligned_cols=75  Identities=25%  Similarity=0.460  Sum_probs=62.2

Q ss_pred             cccccccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHHhh
Q 015939            2 VRQELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSHQ   79 (398)
Q Consensus         2 ~~~~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~   79 (398)
                      ..........+++.||||.+.|++|++++|||+||+.||..+|. +...||.|+. ... .+.+|..+..++..+...
T Consensus         2 ~~~~~~~~~~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~-~~~~Cp~cr~-~~~-~~~~n~~l~~~~~~~~~~   76 (386)
T KOG2177|consen    2 ASAALLEVLQEELTCPICLEYFREPVLLPCGHNFCRACLTRSWE-GPLSCPVCRP-PSR-NLRPNVLLANLVERLRQL   76 (386)
T ss_pred             cchhhhhhccccccChhhHHHhhcCccccccchHhHHHHHHhcC-CCcCCcccCC-chh-ccCccHHHHHHHHHHHhc
Confidence            34445566778999999999999999999999999999999998 5678999996 222 667899888888888753

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.76  E-value=6.9e-09  Score=67.80  Aligned_cols=43  Identities=42%  Similarity=0.856  Sum_probs=38.9

Q ss_pred             cccCccccCCCceecC-CCcccchhHHHHHHhcCCCCCCccccc
Q 015939           15 RCPISLDVMKSPVSLC-TGVTYDRSSIQHWLESGHDTCPATMQI   57 (398)
Q Consensus        15 ~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~~~~~CP~~~~~   57 (398)
                      .||||.+.+.+|+.++ |||.||..|+.+|+..+...||.|+..
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~   44 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP   44 (45)
T ss_pred             CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence            4999999999999887 999999999999998767789999865

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=98.75  E-value=7.8e-06  Score=79.27  Aligned_cols=244  Identities=11%  Similarity=0.079  Sum_probs=175.8

Q ss_pred             CcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhcc-----CCChHHHHHHHhcCChhhHHHHHHHHH
Q 015939          130 GFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNT-----YNCLPLFLEILREGNLDSKIGSIKILD  204 (398)
Q Consensus       130 g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~-----~g~i~~Lv~lL~~~~~~~~~~a~~~L~  204 (398)
                      ..+..++.+|...  ...++.+..+..+..|...++.    +...+.+     ......++.+|+.++.-+...|+.+|.
T Consensus        53 ~y~~~~l~ll~~~--~~~d~vqyvL~Li~dll~~~~~----~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt  126 (429)
T cd00256          53 QYVKTFVNLLSQI--DKDDTVRYVLTLIDDMLQEDDT----RVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILA  126 (429)
T ss_pred             HHHHHHHHHHhcc--CcHHHHHHHHHHHHHHHHhchH----HHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHH
Confidence            5678888888762  3356778999999888887654    2322332     567888889999999999999999999


Q ss_pred             HhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHH
Q 015939          205 SISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEK  284 (398)
Q Consensus       205 ~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~  284 (398)
                      .|.........-....-.+.-|...|++..+...+..++.+|..|...++.|..+.+.++++.|+.+|+....+..++-.
T Consensus       127 ~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~  206 (429)
T cd00256         127 KLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQ  206 (429)
T ss_pred             HHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHH
Confidence            88754221111001012334555666655456788889999999999999999999999999999999742335678889


Q ss_pred             HHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhc-cChhHHHHHHHHHHHhhccCC----ChhHHHHHHhcCCHHHHHHH
Q 015939          285 SIKMLSIVATCSEGRLALSEEASCAGRVVERVMK-VGKTAREDAVVVIWSMCCVYK----DARVKEAVVNSNGLTKLLLV  359 (398)
Q Consensus       285 al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~-~~~~~~~~a~~~L~~l~~~~~----~~~~~~~~~~~g~~~~Ll~~  359 (398)
                      ++-++..|+-.++....+. ..+.|+.++++++. ...++.+-++.+|.|+...+.    .......+++.|+++ ++..
T Consensus       207 ~ll~lWlLSF~~~~~~~~~-~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~  284 (429)
T cd00256         207 SIFCIWLLTFNPHAAEVLK-RLSLIQDLSDILKESTKEKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQS  284 (429)
T ss_pred             HHHHHHHHhccHHHHHhhc-cccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHH
Confidence            9999999999888777665 56999999999986 678889999999999987531    123556777777655 5566


Q ss_pred             Hhh--cCcHHHHHHHHHHHHHHhc
Q 015939          360 MQS--ENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       360 l~~--~~~~~~k~~A~~lL~~l~~  381 (398)
                      |+.  -.++.+.+--..+-..|.+
T Consensus       285 L~~rk~~DedL~edl~~L~e~L~~  308 (429)
T cd00256         285 LEQRKYDDEDLTDDLKFLTEELKN  308 (429)
T ss_pred             HhcCCCCcHHHHHHHHHHHHHHHH
Confidence            633  3566666555544444443

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=98.74  E-value=5.3e-09  Score=92.36  Aligned_cols=64  Identities=16%  Similarity=0.234  Sum_probs=56.9

Q ss_pred             cccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHH
Q 015939           13 LFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWS   77 (398)
Q Consensus        13 ~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~   77 (398)
                      -+.|-||.+.++-|+.++||||||.-||.+++.. .+.||+|++..+..-+..+...+..++.+.
T Consensus        25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~-qp~CP~Cr~~~~esrlr~~s~~~ei~es~~   88 (391)
T COG5432          25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHLGT-QPFCPVCREDPCESRLRGSSGSREINESHA   88 (391)
T ss_pred             HHHhhhhhheeecceecccccchhHHHHHHHhcC-CCCCccccccHHhhhcccchhHHHHHHhhh
Confidence            3589999999999999999999999999999975 789999999988888888877777777765

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=98.73  E-value=7.9e-09  Score=89.90  Aligned_cols=75  Identities=31%  Similarity=0.472  Sum_probs=68.7

Q ss_pred             cccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHHhhC
Q 015939            6 LYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSHQL   80 (398)
Q Consensus         6 ~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~   80 (398)
                      ..+++|+-++|.|+.++|++||+.|+|.||+|..|++++..-..+.|+|+.+|....++||.+++..|+.|...+
T Consensus       204 k~rEvpd~lcgkIt~el~~~pvi~psgIty~ra~I~Ehl~rvghfdpvtr~~Lte~q~ipN~alkevIa~fl~~n  278 (284)
T KOG4642|consen  204 KKREVPDYLCGKITLELMREPVITPSGITYDRADIEEHLQRVGHFDPVTRWPLTEYQLIPNLALKEVIAAFLKEN  278 (284)
T ss_pred             ccccccchhhhhhhHHhhcCCccCccccchhHHHHHHHHHHhccCCchhcccCCHHhhccchHHHHHHHHHHHhc
Confidence            467899999999999999999999999999999999999765668999999999999999999999999987543

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=4.9e-09  Score=86.48  Aligned_cols=51  Identities=29%  Similarity=0.626  Sum_probs=43.1

Q ss_pred             cccccCccccCCC--ceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCc
Q 015939           13 LFRCPISLDVMKS--PVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFV   64 (398)
Q Consensus        13 ~~~Cpi~~~~~~d--Pv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~   64 (398)
                      -|.||||++-++.  ||-++|||.||+.||.+.++. ...||.|++.+..+++.
T Consensus       131 ~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~-~~~CP~C~kkIt~k~~~  183 (187)
T KOG0320|consen  131 TYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKN-TNKCPTCRKKITHKQFH  183 (187)
T ss_pred             ccCCCceecchhhccccccccchhHHHHHHHHHHHh-CCCCCCcccccchhhhe
Confidence            4899999999976  555789999999999999986 55799999988776654

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.72  E-value=6.3e-09  Score=89.89  Aligned_cols=58  Identities=28%  Similarity=0.549  Sum_probs=51.1

Q ss_pred             CcccccCccccCCCceecCCCcccchhHHHHHHhc--CCCCCCcccccCCCCCCcccHHH
Q 015939           12 NLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLES--GHDTCPATMQILSTKEFVPNLTL   69 (398)
Q Consensus        12 ~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~--~~~~CP~~~~~l~~~~l~~n~~l   69 (398)
                      ..|-|-||++.-+|||++.|||=||=-||.+|+..  +...||+|+..++.+.++|-+.-
T Consensus        46 ~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGr  105 (230)
T KOG0823|consen   46 GFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGR  105 (230)
T ss_pred             CceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeecc
Confidence            56899999999999999999999999999999853  45679999999998888887544

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=8.1e-09  Score=91.85  Aligned_cols=52  Identities=17%  Similarity=0.389  Sum_probs=46.7

Q ss_pred             CCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCC
Q 015939           11 PNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEF   63 (398)
Q Consensus        11 ~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l   63 (398)
                      +..+.|-+|++-++||--+||||-||=+||..|..+ ...||.||+.+++..+
T Consensus       237 ~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~e-k~eCPlCR~~~~pskv  288 (293)
T KOG0317|consen  237 EATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSE-KAECPLCREKFQPSKV  288 (293)
T ss_pred             CCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHcc-ccCCCcccccCCCcce
Confidence            345899999999999999999999999999999975 5569999999988764

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.71  E-value=1.6e-06  Score=80.42  Aligned_cols=184  Identities=17%  Similarity=0.193  Sum_probs=145.1

Q ss_pred             CChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcc-hHHHHHHcCChHHHH
Q 015939          191 GNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRS-VKAQLVELGMVQILT  269 (398)
Q Consensus       191 ~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~-~~~~~v~~g~v~~Lv  269 (398)
                      .+.+-++.|..-|..+..+=+|...+.. .|++.+|+.+|.+. +..+++.|+++|...+.+.. .+..+.+.|+.+.|+
T Consensus        95 ~~le~ke~ald~Le~lve~iDnAndl~~-~ggl~~ll~~l~~~-~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll  172 (342)
T KOG2160|consen   95 VDLEDKEDALDNLEELVEDIDNANDLIS-LGGLVPLLGYLENS-DAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL  172 (342)
T ss_pred             CCHHHHHHHHHHHHHHHHhhhhHHhHhh-ccCHHHHHHHhcCC-cHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence            3678888899999999999788888887 78999999999998 89999999999999998665 666677999999999


Q ss_pred             HHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhc--cChhHHHHHHHHHHHhhccCCChhHHHH
Q 015939          270 RILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMK--VGKTAREDAVVVIWSMCCVYKDARVKEA  346 (398)
Q Consensus       270 ~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~  346 (398)
                      .++. .+.+..++.+|+.++..|-. ++.+...+. ..++...|..+|.+  .+...+..++..+..+....  ..... 
T Consensus       173 ~~ls-~~~~~~~r~kaL~AissLIRn~~~g~~~fl-~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~--~s~~d-  247 (342)
T KOG2160|consen  173 KILS-SDDPNTVRTKALFAISSLIRNNKPGQDEFL-KLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQED--KSDED-  247 (342)
T ss_pred             HHHc-cCCCchHHHHHHHHHHHHHhcCcHHHHHHH-hcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhh--hhhhh-
Confidence            9997 45666788999999999988 557888887 45779999999998  68888999999999998753  22333 


Q ss_pred             HHhcCCHHHHHHHHhhcCcHHHHHHHHH-HHHHHhc
Q 015939          347 VVNSNGLTKLLLVMQSENEGIVRKMCGD-LVKVLGK  381 (398)
Q Consensus       347 ~~~~g~~~~Ll~~l~~~~~~~~k~~A~~-lL~~l~~  381 (398)
                      +...-+++..+..+.+.....+++.|.. +|..+.+
T Consensus       248 ~~~~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~  283 (342)
T KOG2160|consen  248 IASSLGFQRVLENLISSLDFEVNEAALTALLSLLSE  283 (342)
T ss_pred             HHHHhhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence            4444445555555555557788888855 4444444

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.69  E-value=2.7e-06  Score=91.56  Aligned_cols=58  Identities=16%  Similarity=0.110  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhh
Q 015939           86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLI  160 (398)
Q Consensus        86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l  160 (398)
                      .++.|++.|.+.+..  .+..|+..|..+..           . ++++.|...|++ .+  ..++..|+.+|..+
T Consensus       622 ~~~~L~~~L~D~d~~--VR~~Av~~L~~~~~-----------~-~~~~~L~~aL~D-~d--~~VR~~Aa~aL~~l  679 (897)
T PRK13800        622 SVAELAPYLADPDPG--VRRTAVAVLTETTP-----------P-GFGPALVAALGD-GA--AAVRRAAAEGLREL  679 (897)
T ss_pred             hHHHHHHHhcCCCHH--HHHHHHHHHhhhcc-----------h-hHHHHHHHHHcC-CC--HHHHHHHHHHHHHH
Confidence            355677777766554  77778877776542           2 677888888866 43  45667888877665

>smart00184 RING Ring finger

Probab=98.67  E-value=1.8e-08  Score=63.51  Aligned_cols=39  Identities=51%  Similarity=1.015  Sum_probs=35.9

Q ss_pred             ccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcc
Q 015939           16 CPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPAT   54 (398)
Q Consensus        16 Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~   54 (398)
                      ||||.+..++|++++|||.||..|+.+|+..+...||.|
T Consensus         1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            899999999999999999999999999998556779976

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=98.63  E-value=2.5e-07  Score=84.67  Aligned_cols=88  Identities=15%  Similarity=0.249  Sum_probs=59.4

Q ss_pred             CcccccCcccc-CCCc----eecCCCcccchhHHHHHHhcCCCCCCcccccCCCCC----CcccHHHHHHHHHHH-----
Q 015939           12 NLFRCPISLDV-MKSP----VSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKE----FVPNLTLHRLIAHWS-----   77 (398)
Q Consensus        12 ~~~~Cpi~~~~-~~dP----v~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~----l~~n~~l~~~i~~~~-----   77 (398)
                      ++..||+|+.- +.+|    .+.+|||+||++||.+.|..|...||.|+.++....    ..++..+.+-|+-..     
T Consensus         2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV~iRkrv~~i   81 (309)
T TIGR00570         2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEVDIRKRVLKI   81 (309)
T ss_pred             CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHHHHHHHHHHH
Confidence            45689999983 3455    334799999999999998777778999999998766    455555544444332     


Q ss_pred             -h----hCCCC------HHHHHHHHHHHHcCCC
Q 015939           78 -H----QLTVP------EQEVRVWIEKIKSENE   99 (398)
Q Consensus        78 -~----~~p~p------~~~i~~l~~~l~~~~~   99 (398)
                       .    .+++-      .+.+..++-.|.++.+
T Consensus        82 ~Nk~e~dF~~l~~yNdYLE~vEdii~nL~~~~d  114 (309)
T TIGR00570        82 YNKREEDFPSLREYNDYLEEVEDIVYNLTNNID  114 (309)
T ss_pred             HccchhccCCHHHHHHHHHHHHHHHHHhhcCCc
Confidence             1    12222      3556677777766543

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=7.1e-06  Score=83.06  Aligned_cols=260  Identities=15%  Similarity=0.170  Sum_probs=187.0

Q ss_pred             HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhh-hhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939           85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATG-CEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE  163 (398)
Q Consensus        85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~-~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~  163 (398)
                      ..+..|+..|...++ +-.+.+|+.+|...... ++..-.-+.-. -+||.|+.+|+...+  .++.-.|+++|..|+.-
T Consensus       167 Sk~kkLL~gL~~~~D-es~Qleal~Elce~L~mgnEesLs~fpv~-slvp~Lv~LL~~E~n--~DIMl~AcRaltyl~ev  242 (1051)
T KOG0168|consen  167 SKAKKLLQGLQAESD-ESQQLEALTELCEMLSMGNEESLSGFPVK-SLVPVLVALLSHEHN--FDIMLLACRALTYLCEV  242 (1051)
T ss_pred             HHHHHHHHhccccCC-hHHHHHHHHHHHHHHhhcchhhhccccHH-HHHHHHHHHHhcccc--HHHHHHHHHHHHHHHhh
Confidence            356667777766532 23788899888875543 33333322222 689999999987333  45669999999999864


Q ss_pred             cchHHHhhHhhhccCCChHHHHHHHhcC-ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHH
Q 015939          164 NGVKEKLNRLILNTYNCLPLFLEILREG-NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAI  242 (398)
Q Consensus       164 ~~~~~~~~~~il~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a  242 (398)
                      -+.   . ..++++.++||.|+.-|..= -.++.+.+..+|..|+... .++++ . .|++-..+.+|.=- +..+++.|
T Consensus       243 lP~---S-~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H-~~AiL-~-AG~l~a~LsylDFF-Si~aQR~A  314 (1051)
T KOG0168|consen  243 LPR---S-SAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRH-PKAIL-Q-AGALSAVLSYLDFF-SIHAQRVA  314 (1051)
T ss_pred             ccc---h-hheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhc-cHHHH-h-cccHHHHHHHHHHH-HHHHHHHH
Confidence            443   2 44478999999999877643 5678899999999999873 34443 4 68888888887755 56699999


Q ss_pred             HHHHHHhcCC--cchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC----CHHHHHHHhhccCcHHHHHHHH
Q 015939          243 LSILITLSVY--RSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT----CSEGRLALSEEASCAGRVVERV  316 (398)
Q Consensus       243 ~~aL~~Ls~~--~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~----~~~~~~~i~~~~g~v~~Lv~~l  316 (398)
                      +.+..|.|..  .+.-..+++  ++|.|..+|+  ..|...++..+-++..++.    .++--+++. ..|.|.....++
T Consensus       315 laiaaN~Cksi~sd~f~~v~e--alPlL~~lLs--~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~-s~dLi~~~~qLl  389 (1051)
T KOG0168|consen  315 LAIAANCCKSIRSDEFHFVME--ALPLLTPLLS--YQDKKPIESVCICLTRIADGFQHGPDKLDQLC-SHDLITNIQQLL  389 (1051)
T ss_pred             HHHHHHHHhcCCCccchHHHH--HHHHHHHHHh--hccchhHHHHHHHHHHHHHhcccChHHHHHHh-chhHHHHHHHHH
Confidence            9999999853  333333444  7999999995  4788899999888888875    455567777 459999999988


Q ss_pred             hcc----ChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhc
Q 015939          317 MKV----GKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSE  363 (398)
Q Consensus       317 ~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~  363 (398)
                      .-.    +..+.---++.|..+|..  .+.........++...|..+|+..
T Consensus       390 svt~t~Ls~~~~~~vIrmls~msS~--~pl~~~tl~k~~I~~~L~~il~g~  438 (1051)
T KOG0168|consen  390 SVTPTILSNGTYTGVIRMLSLMSSG--SPLLFRTLLKLDIADTLKRILQGY  438 (1051)
T ss_pred             hcCcccccccchhHHHHHHHHHccC--ChHHHHHHHHhhHHHHHHHHHhcc
Confidence            752    333444556666666654  367788888899999998888754

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.62  E-value=1.4e-06  Score=88.09  Aligned_cols=192  Identities=15%  Similarity=0.116  Sum_probs=143.3

Q ss_pred             hHHHHHHHhcC-ChhhHHHHHHHHH-HhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhc-CCcchH
Q 015939          181 LPLFLEILREG-NLDSKIGSIKILD-SISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLS-VYRSVK  256 (398)
Q Consensus       181 i~~Lv~lL~~~-~~~~~~~a~~~L~-~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls-~~~~~~  256 (398)
                      +..|+.=|... ++..+..|+.-|+ +|+.. ++.-..+-- ..++|.|+.+|+...+++..-.|++||.+|+ ..++..
T Consensus       169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv-~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~  247 (1051)
T KOG0168|consen  169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPV-KSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS  247 (1051)
T ss_pred             HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccH-HHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence            34444444433 5555555655555 44444 344333333 6799999999999989999999999999999 577888


Q ss_pred             HHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhc
Q 015939          257 AQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCC  336 (398)
Q Consensus       257 ~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~  336 (398)
                      ..+|+.++||.|++=|. .-..-++.|.++.+|.-|+.  ..-.++. .+|++...+.++.=-+..+|+.|+.+..|+|.
T Consensus       248 a~vV~~~aIPvl~~kL~-~IeyiDvAEQ~LqALE~iSR--~H~~AiL-~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Ck  323 (1051)
T KOG0168|consen  248 AIVVDEHAIPVLLEKLL-TIEYIDVAEQSLQALEKISR--RHPKAIL-QAGALSAVLSYLDFFSIHAQRVALAIAANCCK  323 (1051)
T ss_pred             heeecccchHHHHHhhh-hhhhhHHHHHHHHHHHHHHh--hccHHHH-hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88999999999998775 34677899999999999986  2224566 57999999999988899999999999999998


Q ss_pred             cCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          337 VYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       337 ~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      .-..++..-.   ..++|.|-.+|+.. +.+.-+.++-.+..+.+
T Consensus       324 si~sd~f~~v---~ealPlL~~lLs~~-D~k~ies~~ic~~ri~d  364 (1051)
T KOG0168|consen  324 SIRSDEFHFV---MEALPLLTPLLSYQ-DKKPIESVCICLTRIAD  364 (1051)
T ss_pred             cCCCccchHH---HHHHHHHHHHHhhc-cchhHHHHHHHHHHHHH
Confidence            6543333222   24688888888877 66677777776666665

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.57  E-value=2.1e-05  Score=79.96  Aligned_cols=303  Identities=16%  Similarity=0.179  Sum_probs=185.2

Q ss_pred             chhHHHHHH---hcCCCCCCcccccCCCCCCcccHHHHHHHHHHHhhCCCC-HH----HHHHHHHHHHcCCCCchhHHHH
Q 015939           36 DRSSIQHWL---ESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSHQLTVP-EQ----EVRVWIEKIKSENESENSCVDY  107 (398)
Q Consensus        36 ~r~~i~~~~---~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~p~p-~~----~i~~l~~~l~~~~~~~~~~~~a  107 (398)
                      .+.++.+-.   ..|......-.+.+.--. ..+...|++.--+....... ++    .+..+.+.+.+++..  .+..|
T Consensus        23 ~~~~l~kli~~~~~G~~~~~~~~~vi~l~~-s~~~~~Krl~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~--~~~lA   99 (526)
T PF01602_consen   23 KKEALKKLIYLMMLGYDISFLFMEVIKLIS-SKDLELKRLGYLYLSLYLHEDPELLILIINSLQKDLNSPNPY--IRGLA   99 (526)
T ss_dssp             HHHHHHHHHHHHHTT---GSTHHHHHCTCS-SSSHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHH--HHHHH
T ss_pred             HHHHHHHHHHHHHcCCCCchHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHH--HHHHH
Confidence            344555543   235533333223222223 67888888887776543222 22    344566667666543  66778


Q ss_pred             HHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHH
Q 015939          108 LVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEI  187 (398)
Q Consensus       108 l~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~l  187 (398)
                      +..|.++...  +    +.+  -.++.+..+|.+ .+  +-++..|+.++..+...+++      . +... .++.+..+
T Consensus       100 L~~l~~i~~~--~----~~~--~l~~~v~~ll~~-~~--~~VRk~A~~~l~~i~~~~p~------~-~~~~-~~~~l~~l  160 (526)
T PF01602_consen  100 LRTLSNIRTP--E----MAE--PLIPDVIKLLSD-PS--PYVRKKAALALLKIYRKDPD------L-VEDE-LIPKLKQL  160 (526)
T ss_dssp             HHHHHHH-SH--H----HHH--HHHHHHHHHHHS-SS--HHHHHHHHHHHHHHHHHCHC------C-HHGG-HHHHHHHH
T ss_pred             Hhhhhhhccc--c----hhh--HHHHHHHHHhcC-Cc--hHHHHHHHHHHHHHhccCHH------H-HHHH-HHHHHhhh
Confidence            8888887622  2    222  345667777776 43  45679999999888765443      1 2233 68999999


Q ss_pred             HhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHH
Q 015939          188 LREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQI  267 (398)
Q Consensus       188 L~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~  267 (398)
                      |.+.++.++..|+.++..+..+++.-..+  ....++.|.+++... ++-.+...+++|..++........-  ...++.
T Consensus       161 L~d~~~~V~~~a~~~l~~i~~~~~~~~~~--~~~~~~~L~~~l~~~-~~~~q~~il~~l~~~~~~~~~~~~~--~~~i~~  235 (526)
T PF01602_consen  161 LSDKDPSVVSAALSLLSEIKCNDDSYKSL--IPKLIRILCQLLSDP-DPWLQIKILRLLRRYAPMEPEDADK--NRIIEP  235 (526)
T ss_dssp             TTHSSHHHHHHHHHHHHHHHCTHHHHTTH--HHHHHHHHHHHHTCC-SHHHHHHHHHHHTTSTSSSHHHHHH--HHHHHH
T ss_pred             ccCCcchhHHHHHHHHHHHccCcchhhhh--HHHHHHHhhhccccc-chHHHHHHHHHHHhcccCChhhhhH--HHHHHH
Confidence            98889999999999999982222111111  145666677777666 7778888888888887654332210  346677


Q ss_pred             HHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHH
Q 015939          268 LTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAV  347 (398)
Q Consensus       268 Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  347 (398)
                      +..+++  +.++.++-.|..++..+...+.    +.  ..+++.|+.++.+.++..+-.++..|..++...      ...
T Consensus       236 l~~~l~--s~~~~V~~e~~~~i~~l~~~~~----~~--~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~------~~~  301 (526)
T PF01602_consen  236 LLNLLQ--SSSPSVVYEAIRLIIKLSPSPE----LL--QKAINPLIKLLSSSDPNVRYIALDSLSQLAQSN------PPA  301 (526)
T ss_dssp             HHHHHH--HHHHHHHHHHHHHHHHHSSSHH----HH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHC------HHH
T ss_pred             HHHHhh--ccccHHHHHHHHHHHHhhcchH----HH--HhhHHHHHHHhhcccchhehhHHHHHHHhhccc------chh
Confidence            777774  3677788888888887777666    22  245667888887777778888888887777642      122


Q ss_pred             HhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          348 VNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       348 ~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      +.  .....+..+..+.+..+|.++..+|..+..
T Consensus       302 v~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~  333 (526)
T PF01602_consen  302 VF--NQSLILFFLLYDDDPSIRKKALDLLYKLAN  333 (526)
T ss_dssp             HG--THHHHHHHHHCSSSHHHHHHHHHHHHHH--
T ss_pred             hh--hhhhhhheecCCCChhHHHHHHHHHhhccc
Confidence            22  222334455544467777777777766654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PHA02926 zinc finger-like protein; Provisional

Probab=98.56  E-value=3.7e-08  Score=84.43  Aligned_cols=51  Identities=20%  Similarity=0.321  Sum_probs=41.4

Q ss_pred             CCCCcccccCccccCCC---------ceecCCCcccchhHHHHHHhcC-----CCCCCcccccCC
Q 015939            9 AVPNLFRCPISLDVMKS---------PVSLCTGVTYDRSSIQHWLESG-----HDTCPATMQILS   59 (398)
Q Consensus         9 ~~~~~~~Cpi~~~~~~d---------Pv~~~~g~~~~r~~i~~~~~~~-----~~~CP~~~~~l~   59 (398)
                      ...++..|+||.+...+         +++.+|||+||..||.+|.+..     ..+||.||..+.
T Consensus       166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~  230 (242)
T PHA02926        166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR  230 (242)
T ss_pred             hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence            45567899999998644         4777899999999999998631     357999999875

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.53  E-value=5.9e-06  Score=83.05  Aligned_cols=211  Identities=15%  Similarity=0.172  Sum_probs=167.0

Q ss_pred             CCChHHHHHHHhcC-ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccc-cCHHHHHHHHHHHHHhcCCcc-
Q 015939          178 YNCLPLFLEILREG-NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLA-EDQALNDAILSILITLSVYRS-  254 (398)
Q Consensus       178 ~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~~a~~aL~~Ls~~~~-  254 (398)
                      +.-|+.|++-+.+. =.+-|..|++.|..++.  .+|..++.  .++++|+..|+.+ .|++....++.+++++..+++ 
T Consensus        21 aETI~kLcDRvessTL~eDRR~A~rgLKa~sr--kYR~~Vga--~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd~   96 (970)
T KOG0946|consen   21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSR--KYREEVGA--QGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDDS   96 (970)
T ss_pred             HhHHHHHHHHHhhccchhhHHHHHHHHHHHHH--HHHHHHHH--cccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCcc
Confidence            45688888888766 56778999999999988  58888875  5689999999876 789999999999999976552 


Q ss_pred             ------hH----------HHHH-HcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC--CHHHHHHHhhccCcHHHHHHH
Q 015939          255 ------VK----------AQLV-ELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT--CSEGRLALSEEASCAGRVVER  315 (398)
Q Consensus       255 ------~~----------~~~v-~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~--~~~~~~~i~~~~g~v~~Lv~~  315 (398)
                            .+          ..++ ..+-|..|+..+.  .-|-.|+..+...|.+|-+  ..+.+..+...+.+|..++.+
T Consensus        97 ~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e--~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdl  174 (970)
T KOG0946|consen   97 PEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLE--EFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDL  174 (970)
T ss_pred             hhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHH--hhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHH
Confidence                  22          2233 5678899999994  3688999999999999865  668888998899999999999


Q ss_pred             HhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcH---HHHHHHHHHHHHHhcCCCCCCCCCCc
Q 015939          316 VMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEG---IVRKMCGDLVKVLGKASGLGNYQTKT  392 (398)
Q Consensus       316 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~---~~k~~A~~lL~~l~~~~~~~~~~~~~  392 (398)
                      |.+.-..++-.|+-.|..+.+.+  ..+...++=.+++..|+..+...|+.   -+-+-+..+|.+|=++.-.+..-||-
T Consensus       175 L~DsrE~IRNe~iLlL~eL~k~n--~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE  252 (970)
T KOG0946|consen  175 LRDSREPIRNEAILLLSELVKDN--SSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFRE  252 (970)
T ss_pred             HhhhhhhhchhHHHHHHHHHccC--chHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhc
Confidence            99988889999999999999864  57778888899999999999765422   46677777777777755555555554


Q ss_pred             cccc
Q 015939          393 AHIM  396 (398)
Q Consensus       393 ~~~~  396 (398)
                      ++.+
T Consensus       253 ~~~i  256 (970)
T KOG0946|consen  253 GSYI  256 (970)
T ss_pred             cccH
Confidence            4433

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.48  E-value=1e-07  Score=61.94  Aligned_cols=41  Identities=15%  Similarity=0.366  Sum_probs=35.3

Q ss_pred             cccCccccC---CCceecCCCcccchhHHHHHHhcCCCCCCcccc
Q 015939           15 RCPISLDVM---KSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQ   56 (398)
Q Consensus        15 ~Cpi~~~~~---~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~   56 (398)
                      .||+|.+.+   ..|++++|||+||..|+.++. .....||+|++
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~-~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLK-GKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhc-CCCCCCcCCCC
Confidence            389999999   468899999999999999998 34668999974

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.44  E-value=2.8e-06  Score=67.68  Aligned_cols=121  Identities=16%  Similarity=0.162  Sum_probs=105.2

Q ss_pred             CChHHHHHHHhcC-ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHH
Q 015939          179 NCLPLFLEILREG-NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKA  257 (398)
Q Consensus       179 g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~  257 (398)
                      +.+..||+-.... +.+.++....=|.|++.++.|-..+.. .++++..++-|... +..+++-++..|+|||.++.|+.
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrq-l~vLdlFvdsl~e~-ne~LvefgIgglCNlC~d~~n~~   93 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQ-LDVLDLFVDSLEEQ-NELLVEFGIGGLCNLCLDKTNAK   93 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHH-hhHHHHHHHHhhcc-cHHHHHHhHHHHHhhccChHHHH
Confidence            4566677666655 889999999999999999999888888 89999999999999 88899999999999999999999


Q ss_pred             HHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCH-HHHHHHh
Q 015939          258 QLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCS-EGRLALS  303 (398)
Q Consensus       258 ~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~-~~~~~i~  303 (398)
                      .|++++++|.++..++  ++...++-.|+.+|..|+-.+ ..|..+.
T Consensus        94 ~I~ea~g~plii~~ls--sp~e~tv~sa~~~l~~l~~~~Rt~r~ell  138 (173)
T KOG4646|consen   94 FIREALGLPLIIFVLS--SPPEITVHSAALFLQLLEFGERTERDELL  138 (173)
T ss_pred             HHHHhcCCceEEeecC--CChHHHHHHHHHHHHHhcCcccchhHHhc
Confidence            9999999999999995  466778889999999998744 4566666

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=98.44  E-value=8.2e-05  Score=80.31  Aligned_cols=231  Identities=13%  Similarity=0.055  Sum_probs=131.0

Q ss_pred             HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc
Q 015939           86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG  165 (398)
Q Consensus        86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~  165 (398)
                      .++.|++.|..++.+  .+..|+..|..+....           ...+.|...|++ .  +..++..|+.+|..+...+.
T Consensus       653 ~~~~L~~aL~D~d~~--VR~~Aa~aL~~l~~~~-----------~~~~~L~~~L~~-~--d~~VR~~A~~aL~~~~~~~~  716 (897)
T PRK13800        653 FGPALVAALGDGAAA--VRRAAAEGLRELVEVL-----------PPAPALRDHLGS-P--DPVVRAAALDVLRALRAGDA  716 (897)
T ss_pred             HHHHHHHHHcCCCHH--HHHHHHHHHHHHHhcc-----------CchHHHHHHhcC-C--CHHHHHHHHHHHHhhccCCH
Confidence            355666666555443  7777777776653210           122445555555 2  33455666666654321100


Q ss_pred             ---------hHHHhhHhh---hccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccc
Q 015939          166 ---------VKEKLNRLI---LNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLA  233 (398)
Q Consensus       166 ---------~~~~~~~~i---l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~  233 (398)
                               .....|...   +..-+..+.|..+|.+.+.++|..++.+|..+...        . ...++.|..++++.
T Consensus       717 ~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l~~~l~D~~~~VR~~aa~aL~~~~~~--------~-~~~~~~L~~ll~D~  787 (897)
T PRK13800        717 ALFAAALGDPDHRVRIEAVRALVSVDDVESVAGAATDENREVRIAVAKGLATLGAG--------G-APAGDAVRALTGDP  787 (897)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHhcccCcHHHHHHhcCCCHHHHHHHHHHHHHhccc--------c-chhHHHHHHHhcCC
Confidence                     000011110   11112233444555555555555555555544332        1 22356777777777


Q ss_pred             cCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHH
Q 015939          234 EDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVV  313 (398)
Q Consensus       234 ~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv  313 (398)
                       ++.++..|+.+|.++....         ..+..++..|.  ++++.++..|+.+|..+..           ...++.|+
T Consensus       788 -d~~VR~aA~~aLg~~g~~~---------~~~~~l~~aL~--d~d~~VR~~Aa~aL~~l~~-----------~~a~~~L~  844 (897)
T PRK13800        788 -DPLVRAAALAALAELGCPP---------DDVAAATAALR--ASAWQVRQGAARALAGAAA-----------DVAVPALV  844 (897)
T ss_pred             -CHHHHHHHHHHHHhcCCcc---------hhHHHHHHHhc--CCChHHHHHHHHHHHhccc-----------cchHHHHH
Confidence             6777777777777763321         12245666774  3567777777777765532           34567888


Q ss_pred             HHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015939          314 ERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVK  377 (398)
Q Consensus       314 ~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~  377 (398)
                      .+|.+.+..++..|+.+|..+.   +++.         ..+.|...++.. +..+|+.|...|.
T Consensus       845 ~~L~D~~~~VR~~A~~aL~~~~---~~~~---------a~~~L~~al~D~-d~~Vr~~A~~aL~  895 (897)
T PRK13800        845 EALTDPHLDVRKAAVLALTRWP---GDPA---------ARDALTTALTDS-DADVRAYARRALA  895 (897)
T ss_pred             HHhcCCCHHHHHHHHHHHhccC---CCHH---------HHHHHHHHHhCC-CHHHHHHHHHHHh
Confidence            8999999999999999997762   1122         244555666644 8899999988875

>PF05536 Neurochondrin: Neurochondrin

Probab=98.42  E-value=3.3e-05  Score=78.11  Aligned_cols=242  Identities=14%  Similarity=0.099  Sum_probs=160.8

Q ss_pred             cHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcC-------ChhhHHHHHHHH
Q 015939          131 FVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREG-------NLDSKIGSIKIL  203 (398)
Q Consensus       131 ~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L  203 (398)
                      .++.-+.+|+. .+...  +-.++-.+.++..+++.....++. +.++=+.+.|-++|+++       ....+.-|+.+|
T Consensus         6 ~l~~c~~lL~~-~~D~~--rfagL~lvtk~~~~~~~~~~~~~~-v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL   81 (543)
T PF05536_consen    6 SLEKCLSLLKS-ADDTE--RFAGLLLVTKLLDADDEDSQTRRR-VFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVL   81 (543)
T ss_pred             HHHHHHHHhcc-CCcHH--HHHHHHHHHHcCCCchhhHHHHHH-HHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence            35556778877 44233  367777777787766543334445 44665679999999874       345677788899


Q ss_pred             HHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHH
Q 015939          204 DSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVE  283 (398)
Q Consensus       204 ~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~  283 (398)
                      ..++.+++.+..-.- .+-||.|++++.+..+.+....+..+|..++..++.+..+++.|+|+.|.+++.+   .+...+
T Consensus        82 ~~f~~~~~~a~~~~~-~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~---~~~~~E  157 (543)
T PF05536_consen   82 AAFCRDPELASSPQM-VSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN---QSFQME  157 (543)
T ss_pred             HHHcCChhhhcCHHH-HHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh---CcchHH
Confidence            999998765422211 4579999999998844489999999999999999999999999999999999963   677889


Q ss_pred             HHHHHHHHHhCCHHHHHHHhhcc----CcHHHHHHHHhccChhHHHHHHHHHHHhhccCC---ChhHHHHHHhcCCHHHH
Q 015939          284 KSIKMLSIVATCSEGRLALSEEA----SCAGRVVERVMKVGKTAREDAVVVIWSMCCVYK---DARVKEAVVNSNGLTKL  356 (398)
Q Consensus       284 ~al~~L~~La~~~~~~~~i~~~~----g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~---~~~~~~~~~~~g~~~~L  356 (398)
                      .|+.+|.++..... ....-++.    ..++.+-..+.......+-..+..|..+-...+   .......---..+..-+
T Consensus       158 ~Al~lL~~Lls~~~-~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl  236 (543)
T PF05536_consen  158 IALNLLLNLLSRLG-QKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGL  236 (543)
T ss_pred             HHHHHHHHHHHhcc-hhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHH
Confidence            99999999876333 11111122    234444444444555666677777777655431   00011111112234445


Q ss_pred             HHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          357 LLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       357 l~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      ..+|++.-++.-|..|..+...|-+
T Consensus       237 ~~iL~sr~~~~~R~~al~Laa~Ll~  261 (543)
T PF05536_consen  237 RDILQSRLTPSQRDPALNLAASLLD  261 (543)
T ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            6666777677888887766665555

>KOG2042 consensus Ubiquitin fusion degradation protein-2 [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=2.1e-07  Score=96.21  Aligned_cols=74  Identities=34%  Similarity=0.405  Sum_probs=68.0

Q ss_pred             cccccCCCCcccccCccccCCCceecC-CCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHHh
Q 015939            4 QELYIAVPNLFRCPISLDVMKSPVSLC-TGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSH   78 (398)
Q Consensus         4 ~~~~~~~~~~~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~   78 (398)
                      ++.+.++|++|..|+...+|+|||++| +|++.||+.|++++-. ..+.|.||++|....+.||..++..|..|..
T Consensus       861 ee~l~dvpdef~DPlm~Tlm~dPV~LP~Srv~vDRsti~rhlLs-~~tdPFNR~pLt~d~v~pn~eLK~kI~~~~~  935 (943)
T KOG2042|consen  861 EEELGDVPDEFLDPLMSTLMSDPVVLPSSRVTVDRSTIERHLLS-DCTDPFNREPLTEDMVSPNEELKAKIRCWIK  935 (943)
T ss_pred             HHHhccCchhhhCccccccCCCCccCCcccccccHHHHHHHHhc-CCCCccccccCchhhcCCCHHHHHHHHHHHH
Confidence            445678999999999999999999999 9999999999999864 5678999999999999999999999999973

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.41  E-value=6e-05  Score=79.18  Aligned_cols=262  Identities=13%  Similarity=0.103  Sum_probs=171.5

Q ss_pred             hHHHHHHHHHHHhhhhhhh-hhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCCh
Q 015939          103 SCVDYLVKVAKFATGCEAN-RRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCL  181 (398)
Q Consensus       103 ~~~~al~~L~~l~~~~~~~-r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i  181 (398)
                      .-..+++.|-.++...+.. +..+.   .++..-+.+.++ .+-+..++..|+..|..++...+.  .+|+.--.-...+
T Consensus       222 ~a~~~l~~l~El~e~~pk~l~~~l~---~ii~~~l~Ia~n-~~l~~~~R~~ALe~ivs~~e~Ap~--~~k~~~~~~~~lv  295 (1075)
T KOG2171|consen  222 AAKSALEALIELLESEPKLLRPHLS---QIIQFSLEIAKN-KELENSIRHLALEFLVSLSEYAPA--MCKKLALLGHTLV  295 (1075)
T ss_pred             HHHHHHHHHHHHHhhchHHHHHHHH---HHHHHHHHHhhc-ccccHHHHHHHHHHHHHHHHhhHH--HhhhchhhhccHH
Confidence            3456677777777555543 44444   356666777766 444556678999999888876332  2233211122345


Q ss_pred             HHHHHHHhcCC----------------hhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHH
Q 015939          182 PLFLEILREGN----------------LDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSI  245 (398)
Q Consensus       182 ~~Lv~lL~~~~----------------~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~a  245 (398)
                      +.++.++....                ......|..+|-.++.+-..+..+   .-.++.+-.+|.+. +..-+.+++.+
T Consensus       296 ~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~---p~~~~~l~~~l~S~-~w~~R~AaL~A  371 (1075)
T KOG2171|consen  296 PVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVL---PPLFEALEAMLQST-EWKERHAALLA  371 (1075)
T ss_pred             HHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhheh---HHHHHHHHHHhcCC-CHHHHHHHHHH
Confidence            55555543221                113456777777777763333332   44677777888888 89999999999


Q ss_pred             HHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC--CHHHHHHHhhccCcHHHHHHHHhc-cCh
Q 015939          246 LITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT--CSEGRLALSEEASCAGRVVERVMK-VGK  321 (398)
Q Consensus       246 L~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~--~~~~~~~i~~~~g~v~~Lv~~l~~-~~~  321 (398)
                      |..++.+. +.-....+ .+++.++..|.  ++++.|+..|+.++..++.  .++..+..-  +-.++.|+..+.+ .++
T Consensus       372 ls~i~EGc~~~m~~~l~-~Il~~Vl~~l~--DphprVr~AA~naigQ~stdl~p~iqk~~~--e~l~~aL~~~ld~~~~~  446 (1075)
T KOG2171|consen  372 LSVIAEGCSDVMIGNLP-KILPIVLNGLN--DPHPRVRYAALNAIGQMSTDLQPEIQKKHH--ERLPPALIALLDSTQNV  446 (1075)
T ss_pred             HHHHHcccHHHHHHHHH-HHHHHHHhhcC--CCCHHHHHHHHHHHHhhhhhhcHHHHHHHH--HhccHHHHHHhcccCch
Confidence            99997543 33333333 36777888884  5899999999999999998  444444443  4678889998876 788


Q ss_pred             hHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          322 TAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       322 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      +++.+|+.+|.+..-... .+...-- =-+.+.+++..|..++++.+|+.+...+.-.+.
T Consensus       447 rV~ahAa~al~nf~E~~~-~~~l~pY-Ld~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~  504 (1075)
T KOG2171|consen  447 RVQAHAAAALVNFSEECD-KSILEPY-LDGLMEKKLLLLLQSSKPYVQEQAVTAIASVAD  504 (1075)
T ss_pred             HHHHHHHHHHHHHHHhCc-HHHHHHH-HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHH
Confidence            999999999999875421 1111111 145666566666556699999999988877766

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=4.2e-08  Score=89.50  Aligned_cols=70  Identities=21%  Similarity=0.303  Sum_probs=59.2

Q ss_pred             cCCCCcccccCccccCCCceecC-CCcccchhHHHHHHhcCCCCCCcccccCCCC-CCcccHHHHHHHHHHH
Q 015939            8 IAVPNLFRCPISLDVMKSPVSLC-TGVTYDRSSIQHWLESGHDTCPATMQILSTK-EFVPNLTLHRLIAHWS   77 (398)
Q Consensus         8 ~~~~~~~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~-~l~~n~~l~~~i~~~~   77 (398)
                      ..+-.+|.||||+.+++.-++++ |+|.||+.||-+-+..|...||.||+.+... .+.++..+-.+|....
T Consensus        38 ~~~~~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~Dp~fdaLis~i~  109 (381)
T KOG0311|consen   38 AMFDIQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKRSLRIDPNFDALISKIY  109 (381)
T ss_pred             HHhhhhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccccCCCCccHHHHHHHHh
Confidence            34556789999999999999997 9999999999999988899999999998754 6776666677776654

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.37  E-value=0.00013  Score=74.25  Aligned_cols=252  Identities=12%  Similarity=0.104  Sum_probs=169.5

Q ss_pred             HHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchH
Q 015939           88 RVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVK  167 (398)
Q Consensus        88 ~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~  167 (398)
                      +.+.+.+.+++..  .+..|+.++.++.+.+++.   +. . +.++.+..+|.+ .+  +.++..|+.++..+ ...+. 
T Consensus       117 ~~v~~ll~~~~~~--VRk~A~~~l~~i~~~~p~~---~~-~-~~~~~l~~lL~d-~~--~~V~~~a~~~l~~i-~~~~~-  184 (526)
T PF01602_consen  117 PDVIKLLSDPSPY--VRKKAALALLKIYRKDPDL---VE-D-ELIPKLKQLLSD-KD--PSVVSAALSLLSEI-KCNDD-  184 (526)
T ss_dssp             HHHHHHHHSSSHH--HHHHHHHHHHHHHHHCHCC---HH-G-GHHHHHHHHTTH-SS--HHHHHHHHHHHHHH-HCTHH-
T ss_pred             HHHHHHhcCCchH--HHHHHHHHHHHHhccCHHH---HH-H-HHHHHHhhhccC-Cc--chhHHHHHHHHHHH-ccCcc-
Confidence            3444555655543  8888999999988775542   22 1 157888899877 44  56779999999888 11111 


Q ss_pred             HHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHH
Q 015939          168 EKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILI  247 (398)
Q Consensus       168 ~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~  247 (398)
                          ...-.-...++.|.+++...++-.+.....+|..++..+.....-   ...++.+..+|++. ++.++-.++.++.
T Consensus       185 ----~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~-~~~V~~e~~~~i~  256 (526)
T PF01602_consen  185 ----SYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSS-SPSVVYEAIRLII  256 (526)
T ss_dssp             ----HHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred             ----hhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhcc-ccHHHHHHHHHHH
Confidence                110001233555555556678888888888888887764322211   45788888888887 8889999999999


Q ss_pred             HhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHh-ccChhHHHH
Q 015939          248 TLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVM-KVGKTARED  326 (398)
Q Consensus       248 ~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~-~~~~~~~~~  326 (398)
                      .+.....     .-..+++.|+.++.  +.++.++..++..|..++...  ...+.    .....+..+. +.+..++..
T Consensus       257 ~l~~~~~-----~~~~~~~~L~~lL~--s~~~nvr~~~L~~L~~l~~~~--~~~v~----~~~~~~~~l~~~~d~~Ir~~  323 (526)
T PF01602_consen  257 KLSPSPE-----LLQKAINPLIKLLS--SSDPNVRYIALDSLSQLAQSN--PPAVF----NQSLILFFLLYDDDPSIRKK  323 (526)
T ss_dssp             HHSSSHH-----HHHHHHHHHHHHHT--SSSHHHHHHHHHHHHHHCCHC--HHHHG----THHHHHHHHHCSSSHHHHHH
T ss_pred             HhhcchH-----HHHhhHHHHHHHhh--cccchhehhHHHHHHHhhccc--chhhh----hhhhhhheecCCCChhHHHH
Confidence            8887666     33347889999995  478889999999999998843  22222    1233444555 688899999


Q ss_pred             HHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          327 AVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       327 a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      ++.+|..++.    +.....     +++.|...+...++...++.+...+..+..
T Consensus       324 ~l~lL~~l~~----~~n~~~-----Il~eL~~~l~~~~d~~~~~~~i~~I~~la~  369 (526)
T PF01602_consen  324 ALDLLYKLAN----ESNVKE-----ILDELLKYLSELSDPDFRRELIKAIGDLAE  369 (526)
T ss_dssp             HHHHHHHH------HHHHHH-----HHHHHHHHHHHC--HHHHHHHHHHHHHHHH
T ss_pred             HHHHHhhccc----ccchhh-----HHHHHHHHHHhccchhhhhhHHHHHHHHHh
Confidence            9999999996    345444     566788888544467788888777766665

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.36  E-value=7.9e-06  Score=65.14  Aligned_cols=153  Identities=11%  Similarity=0.069  Sum_probs=123.5

Q ss_pred             hhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHH
Q 015939          220 ENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGR  299 (398)
Q Consensus       220 ~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~  299 (398)
                      .+-+..||.=..+..+.++++....=|.|++-++-|...+-+.++++..+.-|.  ..+..+++-+.+.|+|+|..+.+.
T Consensus        15 l~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP~Nys~Lrql~vLdlFvdsl~--e~ne~LvefgIgglCNlC~d~~n~   92 (173)
T KOG4646|consen   15 LEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDPINYSHLRQLDVLDLFVDSLE--EQNELLVEFGIGGLCNLCLDKTNA   92 (173)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCcchHHHHHHhhHHHHHHHHhh--cccHHHHHHhHHHHHhhccChHHH
Confidence            456777777777666899999999999999999999999999999999999994  478999999999999999999999


Q ss_pred             HHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 015939          300 LALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKV  378 (398)
Q Consensus       300 ~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~  378 (398)
                      +.|+ +++++|.++..+.+....+...|+..|.-|+...  +..+.++..-.++..+.+.-.+. +...|--|...|+.
T Consensus        93 ~~I~-ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~--Rt~r~ell~p~Vv~~v~r~~~s~-s~~~rnLa~~fl~~  167 (173)
T KOG4646|consen   93 KFIR-EALGLPLIIFVLSSPPEITVHSAALFLQLLEFGE--RTERDELLSPAVVRTVQRWRESK-SHDERNLASAFLDK  167 (173)
T ss_pred             HHHH-HhcCCceEEeecCCChHHHHHHHHHHHHHhcCcc--cchhHHhccHHHHHHHHHHHHHh-hHHHHHHHHHHHHh
Confidence            9999 5799999999998888888999999999998753  56777777766665554433222 34455555555543

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.36  E-value=8.1e-06  Score=80.70  Aligned_cols=153  Identities=12%  Similarity=0.191  Sum_probs=117.8

Q ss_pred             cCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC-CcchHHHHHHcCChHH
Q 015939          190 EGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV-YRSVKAQLVELGMVQI  267 (398)
Q Consensus       190 ~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~~v~~g~v~~  267 (398)
                      ..+...+..|+.++.+++.. ...+.-+ ++..+..+||.+|.++ +..+...++.+|.||.. ..+.+..+.+.|+|+.
T Consensus       388 ~kd~~~~aaa~l~~~s~srsV~aL~tg~-~~~dv~~plvqll~dp-~~~i~~~~lgai~NlVmefs~~kskfl~~ngId~  465 (678)
T KOG1293|consen  388 IKDHDFVAAALLCLKSFSRSVSALRTGL-KRNDVAQPLVQLLMDP-EIMIMGITLGAICNLVMEFSNLKSKFLRNNGIDI  465 (678)
T ss_pred             cccHHHHHHHHHHHHHHHHHHHHHHcCC-ccchhHHHHHHHhhCc-chhHHHHHHHHHHHHHhhcccHHHHHHHcCcHHH
Confidence            34667777777778888776 4444443 4477899999999888 78899999999999985 5678999999999999


Q ss_pred             HHHHhcccCcchhhHHHHHHHHHHHhCCHHH-H-HHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHH
Q 015939          268 LTRILSDSRTQILTVEKSIKMLSIVATCSEG-R-LALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKE  345 (398)
Q Consensus       268 Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~-~-~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  345 (398)
                      +.+++.  +.+..++..++++|+++.-+.+. + .+.... =....++.+..+.+..+||.+..+|.|+.+++  ++.+.
T Consensus       466 l~s~~~--~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~k-i~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~--~~svd  540 (678)
T KOG1293|consen  466 LESMLT--DPDFNSRANSLWVLRHLMFNCDEEEKFQLLAK-IPANLILDLINDPDWAVQEQCFQLLRNLTCNS--RKSVD  540 (678)
T ss_pred             HHHHhc--CCCchHHHHHHHHHHHHHhcchHHHHHHHHHH-hhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCc--HHHHH
Confidence            999994  47889999999999999764433 2 333321 23455777778899999999999999999864  45554


Q ss_pred             HHHh
Q 015939          346 AVVN  349 (398)
Q Consensus       346 ~~~~  349 (398)
                      -+++
T Consensus       541 fll~  544 (678)
T KOG1293|consen  541 FLLE  544 (678)
T ss_pred             HHHH
Confidence            4444

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.36  E-value=0.00026  Score=74.56  Aligned_cols=265  Identities=12%  Similarity=0.083  Sum_probs=165.7

Q ss_pred             HcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcC-CcHHHHHHHhhhc-cC----------C-c-HHHHHHHHHHHHhh
Q 015939           95 KSENESENSCVDYLVKVAKFATGCEANRRFLASYG-GFVEAVFGVLNRK-RR----------S-E-IAVLESAVRVLNLI  160 (398)
Q Consensus        95 ~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~-g~v~~L~~lL~~~-~~----------~-~-~~~~~~al~~L~~l  160 (398)
                      ++.+.+...|..|+.-|..+++.-+...+...... -.++.++.+...- .|          . + ..--..|..+|-.+
T Consensus       257 ~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrl  336 (1075)
T KOG2171|consen  257 KNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRL  336 (1075)
T ss_pred             hcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHH
Confidence            44444445778888888888766454443333330 2355555554321 01          0 0 00113445555555


Q ss_pred             hcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHH
Q 015939          161 VNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALND  240 (398)
Q Consensus       161 ~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~  240 (398)
                      +.+-+.     +  .+-+-.++.+-.+|.+.++.-|..+..+|..++..- .+.+...-..+++..+..|.++ +|.++.
T Consensus       337 A~~L~g-----~--~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc-~~~m~~~l~~Il~~Vl~~l~Dp-hprVr~  407 (1075)
T KOG2171|consen  337 ALHLGG-----K--QVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGC-SDVMIGNLPKILPIVLNGLNDP-HPRVRY  407 (1075)
T ss_pred             HhcCCh-----h--hehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHccc-HHHHHHHHHHHHHHHHhhcCCC-CHHHHH
Confidence            544333     1  123456777778888999999999999999998872 2223333357889999999999 999999


Q ss_pred             HHHHHHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CH-HHHHHHhhccCcHHHHHH-HH
Q 015939          241 AILSILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CS-EGRLALSEEASCAGRVVE-RV  316 (398)
Q Consensus       241 ~a~~aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~-~~~~~i~~~~g~v~~Lv~-~l  316 (398)
                      +|+.++..++.+- ..-.+-...-..+.|+..+.+ ...++++..|..+|-|++. ++ +...... + +.+..++. ++
T Consensus       408 AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~-~~~~rV~ahAa~al~nf~E~~~~~~l~pYL-d-~lm~~~l~~L~  484 (1075)
T KOG2171|consen  408 AALNAIGQMSTDLQPEIQKKHHERLPPALIALLDS-TQNVRVQAHAAAALVNFSEECDKSILEPYL-D-GLMEKKLLLLL  484 (1075)
T ss_pred             HHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcc-cCchHHHHHHHHHHHHHHHhCcHHHHHHHH-H-HHHHHHHHHHh
Confidence            9999999999754 344444555578899999974 5677999999999999875 22 2222233 2 44443333 34


Q ss_pred             hccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHH
Q 015939          317 MKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGD  374 (398)
Q Consensus       317 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~  374 (398)
                      .++++.+++.++.+|+.++...+ .......  .-.+|.|...|++..+...|.-..+
T Consensus       485 ~~~~~~v~e~vvtaIasvA~AA~-~~F~pY~--d~~Mp~L~~~L~n~~~~d~r~Lrgk  539 (1075)
T KOG2171|consen  485 QSSKPYVQEQAVTAIASVADAAQ-EKFIPYF--DRLMPLLKNFLQNADDKDLRELRGK  539 (1075)
T ss_pred             cCCchhHHHHHHHHHHHHHHHHh-hhhHhHH--HHHHHHHHHHHhCCCchhhHHHHhh
Confidence            56899999999999999986432 1222211  2356777777776644444443333

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.30  E-value=3.1e-07  Score=80.83  Aligned_cols=52  Identities=17%  Similarity=0.320  Sum_probs=45.6

Q ss_pred             CCcccccCccccCCCceecCCCcccchhHHHH-HHhcCCCCCCcccccCCCCC
Q 015939           11 PNLFRCPISLDVMKSPVSLCTGVTYDRSSIQH-WLESGHDTCPATMQILSTKE   62 (398)
Q Consensus        11 ~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~-~~~~~~~~CP~~~~~l~~~~   62 (398)
                      ..+|.|+||.+.+.+|+-++|||.||-.||-. |..+....||.||+...+..
T Consensus       213 ~~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~  265 (271)
T COG5574         213 LADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK  265 (271)
T ss_pred             ccccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence            37899999999999999999999999999999 77665667999998766554

>COG5113 UFD2 Ubiquitin fusion degradation protein 2 [Posttranslational modification, protein turnover, chaperones]

Probab=98.24  E-value=1.3e-06  Score=85.47  Aligned_cols=73  Identities=33%  Similarity=0.435  Sum_probs=66.4

Q ss_pred             cccccCCCCcccccCccccCCCceecC-CCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHH
Q 015939            4 QELYIAVPNLFRCPISLDVMKSPVSLC-TGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWS   77 (398)
Q Consensus         4 ~~~~~~~~~~~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~   77 (398)
                      ++...++|++|..|+.-.+|+|||++| +|-+.+|+.|..++-. ..+.|.-|.||+.++++||..|++-|-.|.
T Consensus       845 eED~GDvPDeFlDPLmftimkdPV~Lp~S~i~IDRSTikahlls-d~tDPFNRmPLtlddVtpn~eLrekIn~f~  918 (929)
T COG5113         845 EEDMGDVPDEFLDPLMFTIMKDPVKLPTSRITIDRSTIKAHLLS-DGTDPFNRMPLTLDDVTPNAELREKINRFY  918 (929)
T ss_pred             hhhccCCchhhhCchhhhcccCCeecccccccccHHHHHHHHhc-CCCCccccCCCchhhcCCCHHHHHHHHHHH
Confidence            445678999999999999999999998 9999999999999864 457899999999999999999999998885

>PF05536 Neurochondrin: Neurochondrin

Probab=98.20  E-value=4.3e-05  Score=77.30  Aligned_cols=153  Identities=19%  Similarity=0.282  Sum_probs=120.4

Q ss_pred             ChHHHHHHHhcCChhhHHHHHHHHHHhhcCch----hHHHhhchhhHHHHHHHHhcccc------CHHHHHHHHHHHHHh
Q 015939          180 CLPLFLEILREGNLDSKIGSIKILDSISLDNE----SKRRVLETENLLSALFDYLKLAE------DQALNDAILSILITL  249 (398)
Q Consensus       180 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~----~~~~i~~~~g~i~~Lv~lL~~~~------~~~~~~~a~~aL~~L  249 (398)
                      .+...+.+|+..+.+-|-.+...+..+..+++    .+..+.+.-| .+.|-++|+++.      ....+.-|+.+|..+
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig-~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f   84 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIG-FKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF   84 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcC-hhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence            46777888888887778888888888887743    2334555344 688999999841      245678889999999


Q ss_pred             cCCcchH--HHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHH
Q 015939          250 SVYRSVK--AQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDA  327 (398)
Q Consensus       250 s~~~~~~--~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a  327 (398)
                      |..++..  ..|+  +-||.|++++.. .++..+...|+.+|..++.+++|++.+. ..|+++.|++.+.+ ++...+.|
T Consensus        85 ~~~~~~a~~~~~~--~~IP~Lle~l~~-~s~~~~v~dalqcL~~Ias~~~G~~aLl-~~g~v~~L~ei~~~-~~~~~E~A  159 (543)
T PF05536_consen   85 CRDPELASSPQMV--SRIPLLLEILSS-SSDLETVDDALQCLLAIASSPEGAKALL-ESGAVPALCEIIPN-QSFQMEIA  159 (543)
T ss_pred             cCChhhhcCHHHH--HHHHHHHHHHHc-CCchhHHHHHHHHHHHHHcCcHhHHHHH-hcCCHHHHHHHHHh-CcchHHHH
Confidence            9977643  4444  479999999964 2334999999999999999999999999 46999999999887 77779999


Q ss_pred             HHHHHHhhccC
Q 015939          328 VVVIWSMCCVY  338 (398)
Q Consensus       328 ~~~L~~l~~~~  338 (398)
                      +.+|.+++...
T Consensus       160 l~lL~~Lls~~  170 (543)
T PF05536_consen  160 LNLLLNLLSRL  170 (543)
T ss_pred             HHHHHHHHHhc
Confidence            99999988753

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=98.19  E-value=0.0004  Score=69.05  Aligned_cols=142  Identities=13%  Similarity=0.138  Sum_probs=107.4

Q ss_pred             CHHHHHHHHHHHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHH
Q 015939          235 DQALNDAILSILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRV  312 (398)
Q Consensus       235 ~~~~~~~a~~aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~L  312 (398)
                      |...+.+|+.++.+++..- .-+.-+-+..++.+|++++.  .++..+...++++|.|+.. -..-+..+.. .|+|..+
T Consensus       390 d~~~~aaa~l~~~s~srsV~aL~tg~~~~dv~~plvqll~--dp~~~i~~~~lgai~NlVmefs~~kskfl~-~ngId~l  466 (678)
T KOG1293|consen  390 DHDFVAAALLCLKSFSRSVSALRTGLKRNDVAQPLVQLLM--DPEIMIMGITLGAICNLVMEFSNLKSKFLR-NNGIDIL  466 (678)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHcCCccchhHHHHHHHhh--CcchhHHHHHHHHHHHHHhhcccHHHHHHH-cCcHHHH
Confidence            4456667777777775432 22333446678999999994  4788999999999999987 4456777774 5999999


Q ss_pred             HHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          313 VERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       313 v~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      .+++.+.+...+..++++|.++....  .+......-..+...++..+-++.+..+++.+-.+||+|--
T Consensus       467 ~s~~~~~~~n~r~~~~~~Lr~l~f~~--de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c  533 (678)
T KOG1293|consen  467 ESMLTDPDFNSRANSLWVLRHLMFNC--DEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTC  533 (678)
T ss_pred             HHHhcCCCchHHHHHHHHHHHHHhcc--hHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence            99999999999999999999999864  34444444444555566666667689999999999998865

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.17  E-value=0.00061  Score=65.65  Aligned_cols=265  Identities=13%  Similarity=0.098  Sum_probs=187.5

Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCCh
Q 015939          102 NSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCL  181 (398)
Q Consensus       102 ~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i  181 (398)
                      +.+..+...++.+..+ +..-+.+.+. +.--.++..|.. ......-+++|++.+..+..-..+    .+.  ...|++
T Consensus        40 ~vraa~yRilRy~i~d-~~~l~~~~~l-~id~~ii~SL~~-~~~~~~ER~QALkliR~~l~~~~~----~~~--~~~~vv  110 (371)
T PF14664_consen   40 EVRAAGYRILRYLISD-EESLQILLKL-HIDIFIIRSLDR-DNKNDVEREQALKLIRAFLEIKKG----PKE--IPRGVV  110 (371)
T ss_pred             HHHHHHHHHHHHHHcC-HHHHHHHHHc-CCchhhHhhhcc-cCCChHHHHHHHHHHHHHHHhcCC----ccc--CCHHHH
Confidence            4788888899888866 5566677777 777777777766 333333468999999887754332    122  256889


Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHH
Q 015939          182 PLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVE  261 (398)
Q Consensus       182 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~  261 (398)
                      ..++.+..+.+...+..|..+|..|+..+  -..+.. .||+..|++.+.++ ..+..+..+.++..+-..++.|+.+..
T Consensus       111 ralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~-~gG~~~L~~~l~d~-~~~~~~~l~~~lL~lLd~p~tR~yl~~  186 (371)
T PF14664_consen  111 RALVAIAEHEDDRLRRICLETLCELALLN--PELVAE-CGGIRVLLRALIDG-SFSISESLLDTLLYLLDSPRTRKYLRP  186 (371)
T ss_pred             HHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHH-cCCHHHHHHHHHhc-cHhHHHHHHHHHHHHhCCcchhhhhcC
Confidence            99999999998999999999999998752  233444 78999999999886 566888899999999888888876654


Q ss_pred             cCChHHHHHHhccc-----Ccch--hhHHHHHHHHHHHhCCHHHHHHHhhcc-CcHHHHHHHHhccChhHHHHHHHHHHH
Q 015939          262 LGMVQILTRILSDS-----RTQI--LTVEKSIKMLSIVATCSEGRLALSEEA-SCAGRVVERVMKVGKTAREDAVVVIWS  333 (398)
Q Consensus       262 ~g~v~~Lv~lL~~~-----~~~~--~~~~~al~~L~~La~~~~~~~~i~~~~-g~v~~Lv~~l~~~~~~~~~~a~~~L~~  333 (398)
                      .--+..++.-..+.     .++.  +-...+..++..+-.+..|--.+..+. .++..||..|...++++++..+.++..
T Consensus       187 ~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~d  266 (371)
T PF14664_consen  187 GFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFD  266 (371)
T ss_pred             CccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            33355555555332     1122  345566666677666677766665332 578889988888888888888887755


Q ss_pred             hhccC-----------------C-------------------------Chh--------HHHHHHhcCCHHHHHHHHhhc
Q 015939          334 MCCVY-----------------K-------------------------DAR--------VKEAVVNSNGLTKLLLVMQSE  363 (398)
Q Consensus       334 l~~~~-----------------~-------------------------~~~--------~~~~~~~~g~~~~Ll~~l~~~  363 (398)
                      +-.-.                 +                         ..+        .....++.|.++.|+.++.+.
T Consensus       267 llrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~ili~~gL~~~L~~li~~~  346 (371)
T PF14664_consen  267 LLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLAILIEAGLLEALVELIESS  346 (371)
T ss_pred             HHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHHHHHHcChHHHHHHHHhcC
Confidence            41000                 0                         000        234457899999999999888


Q ss_pred             CcHHHHHHHHHHHHHH
Q 015939          364 NEGIVRKMCGDLVKVL  379 (398)
Q Consensus       364 ~~~~~k~~A~~lL~~l  379 (398)
                      .++....||.-+|..+
T Consensus       347 ~d~~l~~KAtlLL~el  362 (371)
T PF14664_consen  347 EDSSLSRKATLLLGEL  362 (371)
T ss_pred             CCchHHHHHHHHHHHH
Confidence            7889999998887654

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.15  E-value=2.2e-06  Score=62.23  Aligned_cols=45  Identities=24%  Similarity=0.518  Sum_probs=34.7

Q ss_pred             CCCCcccccCccccCCCc-------------eecCCCcccchhHHHHHHhcCCCCCCccc
Q 015939            9 AVPNLFRCPISLDVMKSP-------------VSLCTGVTYDRSSIQHWLESGHDTCPATM   55 (398)
Q Consensus         9 ~~~~~~~Cpi~~~~~~dP-------------v~~~~g~~~~r~~i~~~~~~~~~~CP~~~   55 (398)
                      ++.++- |+||++.|.||             +..+|||.|-..||++|+.. ..+||.||
T Consensus        16 ~~~~d~-C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR   73 (73)
T PF12678_consen   16 DIADDN-CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQ-NNTCPLCR   73 (73)
T ss_dssp             SSCCSB-ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTT-SSB-TTSS
T ss_pred             cCcCCc-ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhc-CCcCCCCC
Confidence            344443 99999999444             34579999999999999975 45999996

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=1.9e-06  Score=82.37  Aligned_cols=74  Identities=18%  Similarity=0.255  Sum_probs=58.7

Q ss_pred             ccccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCC-----CcccHHHHHHHHHHHhh
Q 015939            5 ELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKE-----FVPNLTLHRLIAHWSHQ   79 (398)
Q Consensus         5 ~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~-----l~~n~~l~~~i~~~~~~   79 (398)
                      +....+..+|.|-+|...+.+||+++|||+||+.||.+..+. ...||.|+.++....     ..+|+.+..+|..|+..
T Consensus        76 s~~~~~~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~-~~~cp~Cr~~l~e~~~~~~~~~~~r~~~~li~~F~~~  154 (398)
T KOG4159|consen   76 SGPEEIRSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQ-ETECPLCRDELVELPALEQALSLNRLLCKLITKFLEG  154 (398)
T ss_pred             ccCccccchhhhhhhHhhcCCCccccccccccHHHHHHHhcc-CCCCcccccccccchHHHHHHHHHHHHHHHHHHhhhh
Confidence            445677899999999999999999999999999999997773 678999999887532     12355556666666643

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=8.1e-07  Score=89.46  Aligned_cols=56  Identities=16%  Similarity=0.316  Sum_probs=50.0

Q ss_pred             CCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcc
Q 015939           10 VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVP   65 (398)
Q Consensus        10 ~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~   65 (398)
                      +..-++||.|.+=.+|-|++.|||.||-.||+.......+.||.|+.+|...|+.+
T Consensus       640 yK~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~  695 (698)
T KOG0978|consen  640 YKELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR  695 (698)
T ss_pred             HHhceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence            34556899999999999999999999999999999877889999999998887654

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.10  E-value=0.00048  Score=65.22  Aligned_cols=223  Identities=12%  Similarity=0.118  Sum_probs=160.4

Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCCh
Q 015939          102 NSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCL  181 (398)
Q Consensus       102 ~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i  181 (398)
                      +.+.-++.+|+.+... +++|..+..+ +++..++..|.+ +..+.+++-+.+-++..|..+..-.    +. +...+.|
T Consensus       172 ~~~~~~~rcLQ~ll~~-~eyR~~~v~a-dg~~~l~~~l~s-~~~~~QlQYqsifciWlLtFn~~~a----e~-~~~~~li  243 (442)
T KOG2759|consen  172 DYIQFAARCLQTLLRV-DEYRYAFVIA-DGVSLLIRILAS-TKCGFQLQYQSIFCIWLLTFNPHAA----EK-LKRFDLI  243 (442)
T ss_pred             chHHHHHHHHHHHhcC-cchhheeeec-CcchhhHHHHhc-cCcchhHHHHHHHHHHHhhcCHHHH----HH-HhhccHH
Confidence            4677788899998877 7899999988 889999988854 4556788899999999999876652    33 5677999


Q ss_pred             HHHHHHHhcC-ChhhHHHHHHHHHHhhcCc-------hhHHHhhchhhHHHHHHHHhccc--cCHHHHHHHHH-------
Q 015939          182 PLFLEILREG-NLDSKIGSIKILDSISLDN-------ESKRRVLETENLLSALFDYLKLA--EDQALNDAILS-------  244 (398)
Q Consensus       182 ~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~-------~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~~a~~-------  244 (398)
                      +.|.++++.. -..+-.-.+.++.|+....       +.+..++.  +.++.-+..|+..  +|++.+...-.       
T Consensus       244 ~~L~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~--~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~  321 (442)
T KOG2759|consen  244 QDLSDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVL--CKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKN  321 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHh--cCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence            9999999977 4445556777788887664       33344443  4456666666643  45544433222       


Q ss_pred             HHHHhcCCcc------------------------hHHHHHH--cCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHH
Q 015939          245 ILITLSVYRS------------------------VKAQLVE--LGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSE  297 (398)
Q Consensus       245 aL~~Ls~~~~------------------------~~~~~v~--~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~  297 (398)
                      -...||+.++                        |...+-+  ...+..|+.+|.. +.||.+...|+-=+..... .|+
T Consensus       322 svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~-s~Dp~iL~VAc~DIge~Vr~yP~  400 (442)
T KOG2759|consen  322 SVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLET-SNDPIILCVACHDIGEYVRHYPE  400 (442)
T ss_pred             HHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhc-CCCCceeehhhhhHHHHHHhCch
Confidence            1223343333                        2333321  2368889999973 5678888888877777766 889


Q ss_pred             HHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhc
Q 015939          298 GRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCC  336 (398)
Q Consensus       298 ~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~  336 (398)
                      ++.-+. .-|+=..+.++|...++.++-+|+.++..+..
T Consensus       401 gk~vv~-k~ggKe~vM~Llnh~d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  401 GKAVVE-KYGGKERVMNLLNHEDPEVRYHALLAVQKLMV  438 (442)
T ss_pred             HhHHHH-HhchHHHHHHHhcCCCchHHHHHHHHHHHHHh
Confidence            998887 56999999999999999999999999987754

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.10  E-value=0.00024  Score=67.90  Aligned_cols=265  Identities=14%  Similarity=0.175  Sum_probs=171.7

Q ss_pred             HHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccch
Q 015939           87 VRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGV  166 (398)
Q Consensus        87 i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~  166 (398)
                      +..|++.+.+++.+...++++.+.|..+..  .+||+.++.. | ...++.+-+. . ..++.....+.+|.++..+++.
T Consensus       182 lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~-~-~~~Il~lAK~-~-e~~e~aR~~~~il~~mFKHSee  255 (832)
T KOG3678|consen  182 LDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARI-G-LGVILNLAKE-R-EPVELARSVAGILEHMFKHSEE  255 (832)
T ss_pred             HHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhc-c-chhhhhhhhh-c-CcHHHHHHHHHHHHHHhhhhHH
Confidence            456788888877653357888888887653  4688888887 6 5666666654 2 2345568888999999887664


Q ss_pred             HHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC--chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHH
Q 015939          167 KEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD--NESKRRVLETENLLSALFDYLKLAEDQALNDAILS  244 (398)
Q Consensus       167 ~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~  244 (398)
                      -   -.. ++..|++..++-..+..++.+..+++.+|.|++..  .+.+..+++ ..+-+-|+-+-.+. |.-.+-.|+-
T Consensus       256 t---~~~-Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmve-Kr~~EWLF~LA~sk-Del~R~~ACl  329 (832)
T KOG3678|consen  256 T---CQR-LVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVE-KRAAEWLFPLAFSK-DELLRLHACL  329 (832)
T ss_pred             H---HHH-HHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHH-hhhhhhhhhhhcch-HHHHHHHHHH
Confidence            2   234 67899999999998999999999999999999887  456666665 45556667666666 6778889999


Q ss_pred             HHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchh-hHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhH
Q 015939          245 ILITLSVYRSVKAQLVELGMVQILTRILSDSRTQIL-TVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTA  323 (398)
Q Consensus       245 aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~-~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~  323 (398)
                      +...|+.+.+.-..+-..|.+..+-.++.+  -||. ..+.+            ....-.....-+..|+-+|.+.  ..
T Consensus       330 AV~vlat~KE~E~~VrkS~TlaLVEPlva~--~DP~~FARD~------------hd~aQG~~~d~LqRLvPlLdS~--R~  393 (832)
T KOG3678|consen  330 AVAVLATNKEVEREVRKSGTLALVEPLVAS--LDPGRFARDA------------HDYAQGRGPDDLQRLVPLLDSN--RL  393 (832)
T ss_pred             HHhhhhhhhhhhHHHhhccchhhhhhhhhc--cCcchhhhhh------------hhhhccCChHHHHHhhhhhhcc--hh
Confidence            999999988876666566665544444432  2332 22211            1111111123355677777632  22


Q ss_pred             HHHHHHHHHHhhccC--CChhHH-HHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          324 REDAVVVIWSMCCVY--KDARVK-EAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       324 ~~~a~~~L~~l~~~~--~~~~~~-~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      ...++.+.+ +|...  .....+ ...-+-|+|+.|-.+..+. ++..-+-|..+|..+.+
T Consensus       394 EAq~i~AF~-l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~-d~vaakfAseALtviGE  452 (832)
T KOG3678|consen  394 EAQCIGAFY-LCAEAAIKSLQGKTKVFSEIGAIQALKEVASSP-DEVAAKFASEALTVIGE  452 (832)
T ss_pred             hhhhhHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHhcCc-hHHHHHHHHHHHHHhcc
Confidence            233333332 12110  001222 2334578888888877754 67777888999999998

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=98.09  E-value=9.8e-07  Score=80.27  Aligned_cols=69  Identities=14%  Similarity=0.285  Sum_probs=56.8

Q ss_pred             ccCCCCcccccCccccCCCceecC-CCcccchhHHHHHHhcCCCCCCcccccCCCCC----CcccHHHHHHHHHH
Q 015939            7 YIAVPNLFRCPISLDVMKSPVSLC-TGVTYDRSSIQHWLESGHDTCPATMQILSTKE----FVPNLTLHRLIAHW   76 (398)
Q Consensus         7 ~~~~~~~~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~----l~~n~~l~~~i~~~   76 (398)
                      ..++-...+|++|+.+|.|+-|+. |=|||||+||-+++.. ..+||.|...+....    +.++.++.+++-..
T Consensus         9 ~~~~n~~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~-~~~CP~C~i~ih~t~pl~ni~~DrtlqdiVyKL   82 (331)
T KOG2660|consen    9 LTELNPHITCRLCGGYLIDATTITECLHTFCKSCIVKYLEE-SKYCPTCDIVIHKTHPLLNIRSDRTLQDIVYKL   82 (331)
T ss_pred             hhhcccceehhhccceeecchhHHHHHHHHHHHHHHHHHHH-hccCCccceeccCccccccCCcchHHHHHHHHH
Confidence            346667889999999999999987 9999999999999987 789999998877654    45666776666544

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.07  E-value=0.0033  Score=59.75  Aligned_cols=224  Identities=15%  Similarity=0.126  Sum_probs=161.1

Q ss_pred             HHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcC--ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHH
Q 015939          149 VLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREG--NLDSKIGSIKILDSISLDNESKRRVLETENLLSAL  226 (398)
Q Consensus       149 ~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~L  226 (398)
                      ...-++++|..+...++.    |-. ++.+.++..++..|.++  +..++-+.+.+++.|+.++...+.+.. .+.|+.|
T Consensus       173 ~~~~~~rcLQ~ll~~~ey----R~~-~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~-~~li~~L  246 (442)
T KOG2759|consen  173 YIQFAARCLQTLLRVDEY----RYA-FVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKR-FDLIQDL  246 (442)
T ss_pred             hHHHHHHHHHHHhcCcch----hhe-eeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhh-ccHHHHH
Confidence            446678888888887765    555 67788889999998433  888999999999999999888877744 8899999


Q ss_pred             HHHhccccCHHHHHHHHHHHHHhcCCc-------chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHH-------HHHH
Q 015939          227 FDYLKLAEDQALNDAILSILITLSVYR-------SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKM-------LSIV  292 (398)
Q Consensus       227 v~lL~~~~~~~~~~~a~~aL~~Ls~~~-------~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~-------L~~L  292 (398)
                      ++++++..-.++.+-.+.++.|+....       +....|+..++.+.+-.+....-+|+++...---+       ...|
T Consensus       247 ~~Ivk~~~KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~~~v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~L  326 (442)
T KOG2759|consen  247 SDIVKESTKEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVLCKVLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDL  326 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHhcCchHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence            999998867789999999999997544       44566777666555555544333456555332221       2223


Q ss_pred             hCCHHHHHHHh------------------------hc-cCcHHHHHHHHhcc-ChhHHHHHHHHHHHhhccCCChhHHHH
Q 015939          293 ATCSEGRLALS------------------------EE-ASCAGRVVERVMKV-GKTAREDAVVVIWSMCCVYKDARVKEA  346 (398)
Q Consensus       293 a~~~~~~~~i~------------------------~~-~g~v~~Lv~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~  346 (398)
                      ++-++-..++.                        ++ --.+..|+++|+.+ ++..-.-|+.=+.....+.  ++.+..
T Consensus       327 sSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~y--P~gk~v  404 (442)
T KOG2759|consen  327 SSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHY--PEGKAV  404 (442)
T ss_pred             ccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhC--chHhHH
Confidence            43333333332                        11 12577888888864 4666666776677777665  678888


Q ss_pred             HHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          347 VVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       347 ~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      +.+-||=+.+..+|... ++++|-.|..+++.|=-
T Consensus       405 v~k~ggKe~vM~Llnh~-d~~Vry~ALlavQ~lm~  438 (442)
T KOG2759|consen  405 VEKYGGKERVMNLLNHE-DPEVRYHALLAVQKLMV  438 (442)
T ss_pred             HHHhchHHHHHHHhcCC-CchHHHHHHHHHHHHHh
Confidence            89999999999999877 89999999888877643

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.03  E-value=3.1e-06  Score=81.40  Aligned_cols=54  Identities=24%  Similarity=0.495  Sum_probs=47.2

Q ss_pred             cccccCccccCCCceecCCCcccchhHHHHHHhc----CCCCCCcccccCCCCCCccc
Q 015939           13 LFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLES----GHDTCPATMQILSTKEFVPN   66 (398)
Q Consensus        13 ~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~----~~~~CP~~~~~l~~~~l~~n   66 (398)
                      +..||||.....=|+.+.|||.||=.||-++|..    +...||.|+..+...++.|-
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv  243 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPV  243 (513)
T ss_pred             CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeee
Confidence            7789999999999999999999999999998864    34679999998888776554

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.01  E-value=9.3e-06  Score=51.83  Aligned_cols=41  Identities=22%  Similarity=0.194  Sum_probs=37.0

Q ss_pred             CcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC
Q 015939          252 YRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT  294 (398)
Q Consensus       252 ~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~  294 (398)
                      +++++..+++.|+||.|+.+|.  +.++++++.|+++|.||+.
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~--~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLK--SPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTT--SSSHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHHcccHHHHHHHHc--CCCHHHHHHHHHHHHHHhC
Confidence            3578899999999999999995  5899999999999999974

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=97.97  E-value=5.9e-06  Score=80.04  Aligned_cols=69  Identities=25%  Similarity=0.440  Sum_probs=55.0

Q ss_pred             ccCCCCcccccCccccCCCceec-CCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcc-cHHHHHHHHHH
Q 015939            7 YIAVPNLFRCPISLDVMKSPVSL-CTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVP-NLTLHRLIAHW   76 (398)
Q Consensus         7 ~~~~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~-n~~l~~~i~~~   76 (398)
                      ...+.+++.||+|..++.||+.. .|||.||+.||..|... ...||.|+..+......+ ...+++.+..|
T Consensus        15 ~~~~~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~-~~~cp~~~~~~~~~~~~~~~~~~~~~~~~l   85 (391)
T KOG0297|consen   15 GRPLDENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSN-HQKCPVCRQELTQAEELPVPRALRRELLKL   85 (391)
T ss_pred             CCCCcccccCccccccccCCCCCCCCCCcccccccchhhcc-CcCCcccccccchhhccCchHHHHHHHHhc
Confidence            34567889999999999999995 89999999999999987 789999988877665544 23345555544

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=97.96  E-value=0.0015  Score=64.70  Aligned_cols=264  Identities=13%  Similarity=0.090  Sum_probs=170.0

Q ss_pred             HHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHh--------hhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCC
Q 015939          108 LVKVAKFATGCEANRRFLASYGGFVEAVFGVL--------NRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYN  179 (398)
Q Consensus       108 l~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL--------~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g  179 (398)
                      +.+|+.+.++ +.+...+... .++..|+.+-        .. ...+..+..+|+++|.|+...++.   .|.. ..+.|
T Consensus         2 L~~LRiLsRd-~~~~~~l~~~-~~l~~L~~~a~l~~~~~~~~-~~~~~~v~~EALKCL~N~lf~s~~---aR~~-~~~~~   74 (446)
T PF10165_consen    2 LETLRILSRD-PTGLDPLFTE-EGLSTLLKHAGLSESDEDEF-ESPDPDVSREALKCLCNALFLSPS---ARQI-FVDLG   74 (446)
T ss_pred             HHHHHHHccC-cccchhhccH-HHHHHHHHhcCCcccccccc-cCCChHHHHHHHHHHHHHHhCCHH---HHHH-HHHcC
Confidence            4566666655 5555555555 5677777665        11 234566779999999999988776   3544 77899


Q ss_pred             ChHHHHHHHhcC-----ChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccc----------------cCHH
Q 015939          180 CLPLFLEILREG-----NLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLA----------------EDQA  237 (398)
Q Consensus       180 ~i~~Lv~lL~~~-----~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~----------------~~~~  237 (398)
                      ..+.+++.|+..     +.+......++|..++.. .+.+..+....+++..|+..|...                .+..
T Consensus        75 ~~~~l~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~  154 (446)
T PF10165_consen   75 LAEKLCERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEE  154 (446)
T ss_pred             cHHHHHHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHH
Confidence            999999999987     788888999999988765 677777776577888887766421                1445


Q ss_pred             HHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhccc-------CcchhhHHHHHHHHHHHhCC-HHH-------HHHH
Q 015939          238 LNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDS-------RTQILTVEKSIKMLSIVATC-SEG-------RLAL  302 (398)
Q Consensus       238 ~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~-------~~~~~~~~~al~~L~~La~~-~~~-------~~~i  302 (398)
                      ....++++++|+.........--+.+.++.|+.++..-       .+-......+..+|.|+--. ...       ...+
T Consensus       155 ~l~EiLKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~  234 (446)
T PF10165_consen  155 ALSEILKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSL  234 (446)
T ss_pred             HHHHHHHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccc
Confidence            67889999999965433222212345566666665421       12234556677777776321 111       0000


Q ss_pred             ---hhccCcHHHHHHHHhc----cC-h---hHHHHHHHHHHHhhccCCChhHHHHHHh----------------cCCHHH
Q 015939          303 ---SEEASCAGRVVERVMK----VG-K---TAREDAVVVIWSMCCVYKDARVKEAVVN----------------SNGLTK  355 (398)
Q Consensus       303 ---~~~~g~v~~Lv~~l~~----~~-~---~~~~~a~~~L~~l~~~~~~~~~~~~~~~----------------~g~~~~  355 (398)
                         ..+...+..|+.+|..    .. .   ..-.--+.+|.+++..+  +..+..+..                ...-.+
T Consensus       235 ~~~~~~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~--~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~r  312 (446)
T PF10165_consen  235 FPEGDNMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA--REVRKYLRARLLPPDKDRKKPPEKGDTLRSR  312 (446)
T ss_pred             cCCCCChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc--HHHHHHHHHHhCCChhhcccCCCCCcchHHH
Confidence               1123467888888865    11 1   22334455666666543  344444332                345678


Q ss_pred             HHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          356 LLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       356 Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      |+++|.+.. +.+|..++.+|..|++
T Consensus       313 LlrLmt~~~-~~~k~~vaellf~Lc~  337 (446)
T PF10165_consen  313 LLRLMTSPD-PQLKDAVAELLFVLCK  337 (446)
T ss_pred             HHHHhCCCC-chHHHHHHHHHHHHHh
Confidence            888887764 9999999999999987

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PTZ00429 beta-adaptin; Provisional

Probab=97.96  E-value=0.0025  Score=66.73  Aligned_cols=254  Identities=11%  Similarity=0.024  Sum_probs=159.5

Q ss_pred             HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939           84 EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE  163 (398)
Q Consensus        84 ~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~  163 (398)
                      .+++..+-+.|.+.+..  .+..+++.+-.....+...-.       +.+-++.++.+ .  +.+...-.--.|.+.+..
T Consensus        31 kge~~ELr~~L~s~~~~--~kk~alKkvIa~mt~G~DvS~-------LF~dVvk~~~S-~--d~elKKLvYLYL~~ya~~   98 (746)
T PTZ00429         31 RGEGAELQNDLNGTDSY--RKKAAVKRIIANMTMGRDVSY-------LFVDVVKLAPS-T--DLELKKLVYLYVLSTARL   98 (746)
T ss_pred             cchHHHHHHHHHCCCHH--HHHHHHHHHHHHHHCCCCchH-------HHHHHHHHhCC-C--CHHHHHHHHHHHHHHccc
Confidence            34677777888776654  678888877766545433222       23344666665 3  344335444455556543


Q ss_pred             cchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHH
Q 015939          164 NGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAIL  243 (398)
Q Consensus       164 ~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~  243 (398)
                      .++     ..+    -++..+.+-+.+.++.+|..|+++|..+-..     .+.  .-.++++.+.|.+. ++-+++.|+
T Consensus        99 ~pe-----lal----LaINtl~KDl~d~Np~IRaLALRtLs~Ir~~-----~i~--e~l~~~lkk~L~D~-~pYVRKtAa  161 (746)
T PTZ00429         99 QPE-----KAL----LAVNTFLQDTTNSSPVVRALAVRTMMCIRVS-----SVL--EYTLEPLRRAVADP-DPYVRKTAA  161 (746)
T ss_pred             ChH-----HHH----HHHHHHHHHcCCCCHHHHHHHHHHHHcCCcH-----HHH--HHHHHHHHHHhcCC-CHHHHHHHH
Confidence            333     121    2577778888888999999888888876552     122  23567778888887 899999999


Q ss_pred             HHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhH
Q 015939          244 SILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTA  323 (398)
Q Consensus       244 ~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~  323 (398)
                      -++..+-.....  .+.+.|.++.|.++|.  +.++.++.+|+.+|..+.......-.+.  .+.+..++..+...++..
T Consensus       162 lai~Kly~~~pe--lv~~~~~~~~L~~LL~--D~dp~Vv~nAl~aL~eI~~~~~~~l~l~--~~~~~~Ll~~L~e~~EW~  235 (746)
T PTZ00429        162 MGLGKLFHDDMQ--LFYQQDFKKDLVELLN--DNNPVVASNAAAIVCEVNDYGSEKIESS--NEWVNRLVYHLPECNEWG  235 (746)
T ss_pred             HHHHHHHhhCcc--cccccchHHHHHHHhc--CCCccHHHHHHHHHHHHHHhCchhhHHH--HHHHHHHHHHhhcCChHH
Confidence            999998653332  2346788899999994  5899999999999999976322222222  255677777777778888


Q ss_pred             HHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Q 015939          324 REDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLG  380 (398)
Q Consensus       324 ~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~  380 (398)
                      |-..+.+|....-..  ..-.     ...+..+...|++. ++.+.-.|.+++-.+.
T Consensus       236 Qi~IL~lL~~y~P~~--~~e~-----~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~  284 (746)
T PTZ00429        236 QLYILELLAAQRPSD--KESA-----ETLLTRVLPRMSHQ-NPAVVMGAIKVVANLA  284 (746)
T ss_pred             HHHHHHHHHhcCCCC--cHHH-----HHHHHHHHHHhcCC-CHHHHHHHHHHHHHhc
Confidence            887777774422111  1111     23444555555554 4555455544444433

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=97.95  E-value=1.6e-05  Score=50.68  Aligned_cols=41  Identities=22%  Similarity=0.289  Sum_probs=36.9

Q ss_pred             CchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC
Q 015939          209 DNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV  251 (398)
Q Consensus       209 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~  251 (398)
                      +++++..+.+ .|++++|+.+|++. ++++++.|+++|+||+.
T Consensus         1 ~~~~~~~i~~-~g~i~~Lv~ll~~~-~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    1 SPENKQAIVE-AGGIPPLVQLLKSP-DPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             SHHHHHHHHH-TTHHHHHHHHTTSS-SHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHHH-cccHHHHHHHHcCC-CHHHHHHHHHHHHHHhC
Confidence            3578888888 89999999999988 99999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=97.95  E-value=1.9e-05  Score=74.20  Aligned_cols=51  Identities=27%  Similarity=0.456  Sum_probs=45.2

Q ss_pred             ccccCccccCCCceecC-CCcccchhHHHHHHhcCCCCCCcccccCCCCCCcc
Q 015939           14 FRCPISLDVMKSPVSLC-TGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVP   65 (398)
Q Consensus        14 ~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~   65 (398)
                      +.|.|++++-++||+.+ +||.|+|.-|++++.+ +..||+++++|+.+++++
T Consensus         1 m~CaISgEvP~~PVvS~~Sg~vfEkrLIEqyI~e-~G~DPIt~~pLs~eelV~   52 (506)
T KOG0289|consen    1 MVCAISGEVPEEPVVSPVSGHVFEKRLIEQYIAE-TGKDPITNEPLSIEELVE   52 (506)
T ss_pred             CeecccCCCCCCccccccccchHHHHHHHHHHHH-cCCCCCCCCcCCHHHeee
Confidence            46999999999999998 9999999999999986 667999999988766544

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.91  E-value=9.5e-06  Score=72.37  Aligned_cols=64  Identities=16%  Similarity=0.310  Sum_probs=51.0

Q ss_pred             ccccCccccCCCceecC-CCcccchhHHHHHHhcCCCCCCcccc-cCCCCCCcccHHHHHHHHHHH
Q 015939           14 FRCPISLDVMKSPVSLC-TGVTYDRSSIQHWLESGHDTCPATMQ-ILSTKEFVPNLTLHRLIAHWS   77 (398)
Q Consensus        14 ~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~~~~~CP~~~~-~l~~~~l~~n~~l~~~i~~~~   77 (398)
                      +.||+|+.++++|+-++ |||+||.+||+..+-+....||.|.. .+--+.+.|+...+.-++.+.
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~l  340 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKAL  340 (427)
T ss_pred             ccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHH
Confidence            78999999999999995 99999999999988655778999954 233345677776666666654

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=97.85  E-value=0.001  Score=65.91  Aligned_cols=223  Identities=16%  Similarity=0.153  Sum_probs=138.0

Q ss_pred             CCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhc
Q 015939          129 GGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISL  208 (398)
Q Consensus       129 ~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~  208 (398)
                      |+.++.+..+|.+.++....+++.|..+...+...-..        ..-.-.+|.++.-+....+..+..++..|..++.
T Consensus       212 Pyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~--------~aVK~llpsll~~l~~~kWrtK~aslellg~m~~  283 (569)
T KOG1242|consen  212 PYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA--------YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMAD  283 (569)
T ss_pred             chHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc--------chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            35677777777764444445555555554443321111        0112345666666665577888999999998888


Q ss_pred             CchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchh-hHHHHHH
Q 015939          209 DNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQIL-TVEKSIK  287 (398)
Q Consensus       209 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~-~~~~al~  287 (398)
                      .........- ..++|.|...|.+. .+++++++..+|..+++--+|..  +.. .+|.|++-+.+    +. -...++.
T Consensus       284 ~ap~qLs~~l-p~iiP~lsevl~DT-~~evr~a~~~~l~~~~svidN~d--I~~-~ip~Lld~l~d----p~~~~~e~~~  354 (569)
T KOG1242|consen  284 CAPKQLSLCL-PDLIPVLSEVLWDT-KPEVRKAGIETLLKFGSVIDNPD--IQK-IIPTLLDALAD----PSCYTPECLD  354 (569)
T ss_pred             hchHHHHHHH-hHhhHHHHHHHccC-CHHHHHHHHHHHHHHHHhhccHH--HHH-HHHHHHHHhcC----cccchHHHHH
Confidence            7444444444 68999999999998 89999999999999987655543  111 57888888853    32 3344444


Q ss_pred             HHHHHhCCHHHHHHHhhccCcHHHHHHHHh----ccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhc
Q 015939          288 MLSIVATCSEGRLALSEEASCAGRVVERVM----KVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSE  363 (398)
Q Consensus       288 ~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~  363 (398)
                      .|..-.--     +.+ ++-.+..++-++.    ..+...++.++.+.+|+|.--.|+....-.+.. .+|.+-..+..-
T Consensus       355 ~L~~ttFV-----~~V-~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~-Llp~lk~~~~d~  427 (569)
T KOG1242|consen  355 SLGATTFV-----AEV-DAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPS-LLPGLKENLDDA  427 (569)
T ss_pred             hhcceeee-----eee-cchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHH-HhhHHHHHhcCC
Confidence            44332211     111 2233444444444    468888899999999999865443333322221 344444444444


Q ss_pred             CcHHHHHHHHHHH
Q 015939          364 NEGIVRKMCGDLV  376 (398)
Q Consensus       364 ~~~~~k~~A~~lL  376 (398)
                       .+++|.-|+.+|
T Consensus       428 -~PEvR~vaarAL  439 (569)
T KOG1242|consen  428 -VPEVRAVAARAL  439 (569)
T ss_pred             -ChhHHHHHHHHH
Confidence             689999988888

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.85  E-value=0.0068  Score=63.57  Aligned_cols=262  Identities=13%  Similarity=0.154  Sum_probs=169.0

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhhhh----cCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccC
Q 015939          103 SCVDYLVKVAKFATGCEANRRFLAS----YGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTY  178 (398)
Q Consensus       103 ~~~~al~~L~~l~~~~~~~r~~i~~----~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~  178 (398)
                      ...-++.+|+++.+.++.....+..    . |-.+.+..+|....+  .+++.-|+.++..+..+.+-    ... ++..
T Consensus      1741 ~v~m~LtAL~Nli~~nPdlasvfgSe~~li-g~F~l~~~~lr~~~~--~~iq~LaL~Vi~~~Tan~~C----v~~-~a~~ 1812 (2235)
T KOG1789|consen 1741 KVLMTLTALANLVSANPDLASVFGSEILLI-GNFPLLITYLRCRKH--PKLQILALQVILLATANKEC----VTD-LATC 1812 (2235)
T ss_pred             HHHHHHHHHHHHHhhCcchhhhccchhhhh-cccHHHHHHHHHcCC--chHHHHHHHHHHHHhcccHH----HHH-HHhh
Confidence            4566889999999887743332221    2 667888888877444  35568899999888776664    344 7788


Q ss_pred             CChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCc----c
Q 015939          179 NCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYR----S  254 (398)
Q Consensus       179 g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~----~  254 (398)
                      |++..|+.+|++. +..|+.+..+|..|+++.+....-.. +|++..+..++-...+++.+.+++..+..|..++    .
T Consensus      1813 ~vL~~LL~lLHS~-PS~R~~vL~vLYAL~S~~~i~keA~~-hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPr 1890 (2235)
T KOG1789|consen 1813 NVLTTLLTLLHSQ-PSMRARVLDVLYALSSNGQIGKEALE-HGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPR 1890 (2235)
T ss_pred             hHHHHHHHHHhcC-hHHHHHHHHHHHHHhcCcHHHHHHHh-cCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCc
Confidence            8999999999865 57789999999999999876666666 7877777776655546667777777777664322    1


Q ss_pred             hHHHHH-----------HcC------------------------------------------------------------
Q 015939          255 VKAQLV-----------ELG------------------------------------------------------------  263 (398)
Q Consensus       255 ~~~~~v-----------~~g------------------------------------------------------------  263 (398)
                      .+..++           +.|                                                            
T Consensus      1891 V~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPELiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~ 1970 (2235)
T KOG1789|consen 1891 VTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPELIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTS 1970 (2235)
T ss_pred             eeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcccccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchh
Confidence            100000           000                                                            


Q ss_pred             ---------------------------------ChHHHHHHhcccCcchhhHHH-HHHHHHHHhCCHHHHHHHhhccCcH
Q 015939          264 ---------------------------------MVQILTRILSDSRTQILTVEK-SIKMLSIVATCSEGRLALSEEASCA  309 (398)
Q Consensus       264 ---------------------------------~v~~Lv~lL~~~~~~~~~~~~-al~~L~~La~~~~~~~~i~~~~g~v  309 (398)
                                                       .++.++++|..++......+. .......+..+|.-...+- +-|.+
T Consensus      1971 Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLek~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip-~LGyl 2049 (2235)
T KOG1789|consen 1971 EADKECAVGGSINREFVVGPGFNLRHPKLFLTELLEKVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLP-SLGYL 2049 (2235)
T ss_pred             hhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHHHHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCC-Cccch
Confidence                                             112222222211111111111 2222233334666666666 67999


Q ss_pred             HHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Q 015939          310 GRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLG  380 (398)
Q Consensus       310 ~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~  380 (398)
                      |.++..+.-.+...-..|+++|+.|+.+   .-+.+.|.+...+..++..|...  ...-.-|+..|+.+-
T Consensus      2050 PK~~~Am~~~n~s~P~SaiRVlH~Lsen---~~C~~AMA~l~~i~~~m~~mkK~--~~~~GLA~EalkR~~ 2115 (2235)
T KOG1789|consen 2050 PKFCTAMCLQNTSAPRSAIRVLHELSEN---QFCCDAMAQLPCIDGIMKSMKKQ--PSLMGLAAEALKRLM 2115 (2235)
T ss_pred             HHHHHHHHhcCCcCcHHHHHHHHHHhhc---cHHHHHHhccccchhhHHHHHhc--chHHHHHHHHHHHHH
Confidence            9999999876666668999999999964   57888888888888888887654  233345666665543

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=97.84  E-value=7e-06  Score=68.88  Aligned_cols=45  Identities=20%  Similarity=0.234  Sum_probs=39.1

Q ss_pred             ccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939           14 FRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILS   59 (398)
Q Consensus        14 ~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~   59 (398)
                      |.|-||.+-++.||++.|||.||-.|..+-... .+.|-+|+....
T Consensus       197 F~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~k-g~~C~~Cgk~t~  241 (259)
T COG5152         197 FLCGICKKDYESPVVTECGHSFCSLCAIRKYQK-GDECGVCGKATY  241 (259)
T ss_pred             eeehhchhhccchhhhhcchhHHHHHHHHHhcc-CCcceecchhhc
Confidence            899999999999999999999999998777664 567999987543

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.83  E-value=0.00016  Score=54.42  Aligned_cols=87  Identities=18%  Similarity=0.315  Sum_probs=68.6

Q ss_pred             hHHHHHHH-hcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHH
Q 015939          181 LPLFLEIL-REGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQL  259 (398)
Q Consensus       181 i~~Lv~lL-~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~  259 (398)
                      |+.|++.| ++.++.+|..++.+|..+          .. ..+++.|+.+++++ ++.++..|+.+|..+-         
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----------~~-~~~~~~L~~~l~d~-~~~vr~~a~~aL~~i~---------   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGEL----------GD-PEAIPALIELLKDE-DPMVRRAAARALGRIG---------   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCC----------TH-HHHHHHHHHHHTSS-SHHHHHHHHHHHHCCH---------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHc----------CC-HhHHHHHHHHHcCC-CHHHHHHHHHHHHHhC---------
Confidence            57899999 677999999999999822          22 46799999999887 9999999999999872         


Q ss_pred             HHcCChHHHHHHhcccCcchhhHHHHHHHHH
Q 015939          260 VELGMVQILTRILSDSRTQILTVEKSIKMLS  290 (398)
Q Consensus       260 v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~  290 (398)
                       +..+++.|.+++.+ +.+..++..|..+|.
T Consensus        60 -~~~~~~~L~~~l~~-~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 -DPEAIPALIKLLQD-DDDEVVREAAAEALG   88 (88)
T ss_dssp             -HHHTHHHHHHHHTC--SSHHHHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHcC-CCcHHHHHHHHhhcC
Confidence             34489999999964 345566777877763

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.76  E-value=0.033  Score=53.37  Aligned_cols=246  Identities=17%  Similarity=0.153  Sum_probs=167.8

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchH------HHhhHhhhccCC
Q 015939          106 DYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVK------EKLNRLILNTYN  179 (398)
Q Consensus       106 ~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~------~~~~~~il~~~g  179 (398)
                      ..++.+..++.. |..--.+++. ++|+.|+.+|.+ .+.++  .-..+..|..|...+-..      +..-.. +++.+
T Consensus       103 d~IQ~mhvlAt~-PdLYp~lvel-n~V~slL~LLgH-eNtDI--~iavvdLLqELTD~Dv~~es~egAevLida-Lvdg~  176 (536)
T KOG2734|consen  103 DIIQEMHVLATM-PDLYPILVEL-NAVQSLLELLGH-ENTDI--AIAVVDLLQELTDEDVLYESEEGAEVLIDA-LVDGQ  176 (536)
T ss_pred             HHHHHHHhhhcC-hHHHHHHHHh-ccHHHHHHHhcC-CCchh--HHHHHHHHHHhhhhcccccccccHHHHHHH-HHhcc
Confidence            466667777755 6666678888 999999999998 44443  366777777776533211      112223 66889


Q ss_pred             ChHHHHHHHhcCChh------hHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccc-cCHHHHHHHHHHHHHhcC
Q 015939          180 CLPLFLEILREGNLD------SKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLA-EDQALNDAILSILITLSV  251 (398)
Q Consensus       180 ~i~~Lv~lL~~~~~~------~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~~a~~aL~~Ls~  251 (398)
                      +++.|++-+..-+..      ...+...++.|+... ++....+++ .|.+.-|+.-+... .-..-...|..+|.-+-.
T Consensus       177 vlaLLvqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e-~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq  255 (536)
T KOG2734|consen  177 VLALLVQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVE-QGLLSWLLKRLKGKAAFDANKQYASEILAILLQ  255 (536)
T ss_pred             HHHHHHHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHH-hhHHHHHHHHHhcccCcchhHHHHHHHHHHHhc
Confidence            999999888654433      344566677777766 677777777 67777766644443 122246677788877766


Q ss_pred             Ccc-hHHHHHHcCChHHHHHHhcc-----c--CcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhH
Q 015939          252 YRS-VKAQLVELGMVQILTRILSD-----S--RTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTA  323 (398)
Q Consensus       252 ~~~-~~~~~v~~g~v~~Lv~lL~~-----~--~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~  323 (398)
                      +.+ ++...-...+|..+++-+.-     +  .+..+..++-...|+.+...+++|..+. .+.++. +..++.+.....
T Consensus       256 ~s~e~~~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl-~~EGlq-Lm~Lmlr~Kk~s  333 (536)
T KOG2734|consen  256 NSDENRKLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFL-KGEGLQ-LMNLMLREKKVS  333 (536)
T ss_pred             cCchhhhhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhh-ccccHH-HHHHHHHHHHHh
Confidence            554 77777799999999988741     1  1244677888889999999999999999 445565 444444456667


Q ss_pred             HHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHH
Q 015939          324 REDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVM  360 (398)
Q Consensus       324 ~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l  360 (398)
                      +..|+.+|-....+......+...++.+++..+.-+.
T Consensus       334 r~SalkvLd~am~g~~gt~~C~kfVe~lGLrtiF~~F  370 (536)
T KOG2734|consen  334 RGSALKVLDHAMFGPEGTPNCNKFVEILGLRTIFPLF  370 (536)
T ss_pred             hhhHHHHHHHHHhCCCchHHHHHHHHHHhHHHHHHHH
Confidence            7888999987776533236777788888877766554

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.76  E-value=8.4e-06  Score=73.00  Aligned_cols=44  Identities=18%  Similarity=0.229  Sum_probs=39.0

Q ss_pred             ccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccC
Q 015939           14 FRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQIL   58 (398)
Q Consensus        14 ~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l   58 (398)
                      |.|-||++.|.+||++.|||+||..|-.+.+.. ...|++|.+..
T Consensus       242 f~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk-~~~c~vC~~~t  285 (313)
T KOG1813|consen  242 FKCFICRKYFYRPVVTKCGHYFCEVCALKPYQK-GEKCYVCSQQT  285 (313)
T ss_pred             ccccccccccccchhhcCCceeehhhhcccccc-CCcceeccccc
Confidence            789999999999999999999999998888765 56799998763

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=97.71  E-value=0.0068  Score=58.46  Aligned_cols=255  Identities=15%  Similarity=0.137  Sum_probs=169.1

Q ss_pred             HHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHH
Q 015939          108 LVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEI  187 (398)
Q Consensus       108 l~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~l  187 (398)
                      ++.|-.+.+.++..+..+.-. -..+.+..++-+ .+  .+++-.+.+++.-+..+...    -+. +.+.+.--.++..
T Consensus         4 ~N~Lv~l~~~~p~l~~~~~~~-~~~~~i~~~lL~-~~--~~vraa~yRilRy~i~d~~~----l~~-~~~l~id~~ii~S   74 (371)
T PF14664_consen    4 ANDLVDLLKRHPTLKYDLVLS-FFGERIQCMLLS-DS--KEVRAAGYRILRYLISDEES----LQI-LLKLHIDIFIIRS   74 (371)
T ss_pred             HHHHHHHHHhCchhhhhhhHH-HHHHHHHHHHCC-Cc--HHHHHHHHHHHHHHHcCHHH----HHH-HHHcCCchhhHhh
Confidence            445566666667666655443 455555544433 12  56778899999888876554    233 4455555566667


Q ss_pred             HhcC--ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCCh
Q 015939          188 LREG--NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMV  265 (398)
Q Consensus       188 L~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v  265 (398)
                      |..+  +..-|++|.+.++.+...+.....+ . .|++..++.+..+. +...+..|+.+|..|+..+..  -++.+||+
T Consensus        75 L~~~~~~~~ER~QALkliR~~l~~~~~~~~~-~-~~vvralvaiae~~-~D~lr~~cletL~El~l~~P~--lv~~~gG~  149 (371)
T PF14664_consen   75 LDRDNKNDVEREQALKLIRAFLEIKKGPKEI-P-RGVVRALVAIAEHE-DDRLRRICLETLCELALLNPE--LVAECGGI  149 (371)
T ss_pred             hcccCCChHHHHHHHHHHHHHHHhcCCcccC-C-HHHHHHHHHHHhCC-chHHHHHHHHHHHHHHhhCHH--HHHHcCCH
Confidence            7654  4566889999999887765444444 3 68999999999998 677999999999999865432  24689999


Q ss_pred             HHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhcc-------Ch--hHHHHHHHHHHHhhc
Q 015939          266 QILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKV-------GK--TAREDAVVVIWSMCC  336 (398)
Q Consensus       266 ~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~-------~~--~~~~~a~~~L~~l~~  336 (398)
                      ..|++.+.+  +..++.+..+.++-.+-.+|..|+.+.. .--+..++.-+.+.       +.  +.-..+..++..+-+
T Consensus       150 ~~L~~~l~d--~~~~~~~~l~~~lL~lLd~p~tR~yl~~-~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~Lr  226 (371)
T PF14664_consen  150 RVLLRALID--GSFSISESLLDTLLYLLDSPRTRKYLRP-GFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLR  226 (371)
T ss_pred             HHHHHHHHh--ccHhHHHHHHHHHHHHhCCcchhhhhcC-CccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHh
Confidence            999999964  4445889999999999999999998873 23355555555432       11  123344444444433


Q ss_pred             cCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          337 VYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       337 ~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      .... -..-..-...++..|+..|+.. ++++|+.-..++.-+-+
T Consensus       227 sW~G-Ll~l~~~~~~~lksLv~~L~~p-~~~ir~~Ildll~dllr  269 (371)
T PF14664_consen  227 SWPG-LLYLSMNDFRGLKSLVDSLRLP-NPEIRKAILDLLFDLLR  269 (371)
T ss_pred             cCCc-eeeeecCCchHHHHHHHHHcCC-CHHHHHHHHHHHHHHHC
Confidence            3210 0000001124677899999877 67888888887776665

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.71  E-value=1.6e-05  Score=71.34  Aligned_cols=47  Identities=17%  Similarity=0.253  Sum_probs=42.8

Q ss_pred             cccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCC
Q 015939           15 RCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTK   61 (398)
Q Consensus        15 ~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~   61 (398)
                      .|+||..-+..||.++|+|.||.-||+.-...+.++||+|+.++.+.
T Consensus         9 eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~   55 (324)
T KOG0824|consen    9 ECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST   55 (324)
T ss_pred             cceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence            59999999999999999999999999997766678999999988755

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=97.69  E-value=0.00097  Score=63.91  Aligned_cols=170  Identities=18%  Similarity=0.201  Sum_probs=126.2

Q ss_pred             hccCCChHHHHHHHhcCChhh--HHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCC
Q 015939          175 LNTYNCLPLFLEILREGNLDS--KIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVY  252 (398)
Q Consensus       175 l~~~g~i~~Lv~lL~~~~~~~--~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~  252 (398)
                      +...|++..|+.++...+.+.  |..|+++|..+... +|++.++. -| +..++.+-+....++..+..+..|.++=..
T Consensus       176 iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a-eN~d~va~-~~-~~~Il~lAK~~e~~e~aR~~~~il~~mFKH  252 (832)
T KOG3678|consen  176 IRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA-ENRDRVAR-IG-LGVILNLAKEREPVELARSVAGILEHMFKH  252 (832)
T ss_pred             hhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh-hhhhHHhh-cc-chhhhhhhhhcCcHHHHHHHHHHHHHHhhh
Confidence            557799999999999886655  88999999977655 56677665 34 455555555555678899999999999765


Q ss_pred             c-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC--CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHH
Q 015939          253 R-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT--CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVV  329 (398)
Q Consensus       253 ~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~--~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~  329 (398)
                      . +.+..+++.|+++.++--.+.  .+|.+.+.|.-+|.|.+-  +.++++.|++. .+-+-|.-+-...++..+-+|+-
T Consensus       253 Seet~~~Lvaa~~lD~vl~~~rR--t~P~lLRH~ALAL~N~~L~~~~a~qrrmveK-r~~EWLF~LA~skDel~R~~ACl  329 (832)
T KOG3678|consen  253 SEETCQRLVAAGGLDAVLYWCRR--TDPALLRHCALALGNCALHGGQAVQRRMVEK-RAAEWLFPLAFSKDELLRLHACL  329 (832)
T ss_pred             hHHHHHHHHhhcccchheeeccc--CCHHHHHHHHHHhhhhhhhchhHHHHHHHHh-hhhhhhhhhhcchHHHHHHHHHH
Confidence            4 589999999999999888754  689999999999999876  56778888743 44444444334467777889998


Q ss_pred             HHHHhhccCCChhHHHHHHhcCCH
Q 015939          330 VIWSMCCVYKDARVKEAVVNSNGL  353 (398)
Q Consensus       330 ~L~~l~~~~~~~~~~~~~~~~g~~  353 (398)
                      ++..|+..   .+.-.++-..|-+
T Consensus       330 AV~vlat~---KE~E~~VrkS~Tl  350 (832)
T KOG3678|consen  330 AVAVLATN---KEVEREVRKSGTL  350 (832)
T ss_pred             HHhhhhhh---hhhhHHHhhccch
Confidence            88888764   3444555555543

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.67  E-value=0.026  Score=51.72  Aligned_cols=272  Identities=11%  Similarity=0.123  Sum_probs=172.2

Q ss_pred             HHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccch
Q 015939           87 VRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGV  166 (398)
Q Consensus        87 i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~  166 (398)
                      ...++..+++.+..  .+..|+..+..+...  ..+.+.....-.++.|..++.. .++    .+.|+.+|.|++.+..-
T Consensus         5 l~elv~ll~~~sP~--v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~-~~~----~~~a~~alVnlsq~~~l   75 (353)
T KOG2973|consen    5 LVELVELLHSLSPP--VRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKD-LDP----AEPAATALVNLSQKEEL   75 (353)
T ss_pred             HHHHHHHhccCChH--HHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccC-ccc----ccHHHHHHHHHHhhHHH
Confidence            34566677776654  777788777777655  3344443332457777888877 443    37799999999976654


Q ss_pred             HHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhh-c-----hhhHHHHHHHHhccccC-HHHH
Q 015939          167 KEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVL-E-----TENLLSALFDYLKLAED-QALN  239 (398)
Q Consensus       167 ~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~-~-----~~g~i~~Lv~lL~~~~~-~~~~  239 (398)
                          ++.++..  .+..+++.+.+.....-...+.+|.||+.+++....+. .     +.|.++........+-+ ..-.
T Consensus        76 ----~~~ll~~--~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f  149 (353)
T KOG2973|consen   76 ----RKKLLQD--LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEF  149 (353)
T ss_pred             ----HHHHHHH--HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccch
Confidence                4553444  88888888887766677788899999999975444432 1     13455444555554412 1345


Q ss_pred             HHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCc-chhhHH-HHHHHHHHHhCCHHHHHHHhhccCcHHHHH----
Q 015939          240 DAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRT-QILTVE-KSIKMLSIVATCSEGRLALSEEASCAGRVV----  313 (398)
Q Consensus       240 ~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~-~~~~~~-~al~~L~~La~~~~~~~~i~~~~g~v~~Lv----  313 (398)
                      ...+..+.||++....|..+.+...++.= .++. ..+ +..+++ -..++|+|.|-.......+..  -.+..|.    
T Consensus       150 ~ylA~vf~nls~~~~gR~l~~~~k~~p~~-kll~-ft~~~s~vRr~GvagtlkN~cFd~~~h~~lL~--e~~~lLp~iLl  225 (353)
T KOG2973|consen  150 HYLAPVFANLSQFEAGRKLLLEPKRFPDQ-KLLP-FTSEDSQVRRGGVAGTLKNCCFDAKLHEVLLD--ESINLLPAILL  225 (353)
T ss_pred             hHHHHHHHHHhhhhhhhhHhcchhhhhHh-hhhc-ccccchhhhccchHHHHHhhhccchhHHHHhc--chHHHHHHHHh
Confidence            67788889999999888888765533321 1221 122 333333 567888888776666555552  1222222    


Q ss_pred             --------------------HHHh-----ccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHh-hcCcHH
Q 015939          314 --------------------ERVM-----KVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQ-SENEGI  367 (398)
Q Consensus       314 --------------------~~l~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~-~~~~~~  367 (398)
                                          +++.     ..++..+..-+.+|.-||..   ..-|+.+...|+ ..+++.+- ...++.
T Consensus       226 Plagpee~sEEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT---~~GRe~lR~kgv-YpilRElhk~e~ded  301 (353)
T KOG2973|consen  226 PLAGPEELSEEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCAT---RAGREVLRSKGV-YPILRELHKWEEDED  301 (353)
T ss_pred             hcCCccccCHHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhh---hHhHHHHHhcCc-hHHHHHHhcCCCcHH
Confidence                                2232     14677788889999999964   456665555555 55666773 345677


Q ss_pred             HHHHHHHHHHHHhc
Q 015939          368 VRKMCGDLVKVLGK  381 (398)
Q Consensus       368 ~k~~A~~lL~~l~~  381 (398)
                      +++.+-.+.+++-+
T Consensus       302 ~~~ace~vvq~Lv~  315 (353)
T KOG2973|consen  302 IREACEQVVQMLVR  315 (353)
T ss_pred             HHHHHHHHHHHHHh
Confidence            88888888888776

>PTZ00429 beta-adaptin; Provisional

Probab=97.62  E-value=0.042  Score=57.74  Aligned_cols=131  Identities=12%  Similarity=0.120  Sum_probs=81.7

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChH
Q 015939          103 SCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLP  182 (398)
Q Consensus       103 ~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~  182 (398)
                      .+..|+-++.++-..++   +.+.+. |.++.|..+|.+ .  ++.++.+|+.+|..+...+++    +-  -...+.+.
T Consensus       156 VRKtAalai~Kly~~~p---elv~~~-~~~~~L~~LL~D-~--dp~Vv~nAl~aL~eI~~~~~~----~l--~l~~~~~~  222 (746)
T PTZ00429        156 VRKTAAMGLGKLFHDDM---QLFYQQ-DFKKDLVELLND-N--NPVVASNAAAIVCEVNDYGSE----KI--ESSNEWVN  222 (746)
T ss_pred             HHHHHHHHHHHHHhhCc---cccccc-chHHHHHHHhcC-C--CccHHHHHHHHHHHHHHhCch----hh--HHHHHHHH
Confidence            66777777777765544   234445 788888888876 3  345678999999888754432    11  11234466


Q ss_pred             HHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCC
Q 015939          183 LFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVY  252 (398)
Q Consensus       183 ~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~  252 (398)
                      .|+..|..-+.=.+.....+|...  .+.....   ....+..+...|++. ++.+.-.|+++++++...
T Consensus       223 ~Ll~~L~e~~EW~Qi~IL~lL~~y--~P~~~~e---~~~il~~l~~~Lq~~-N~AVVl~Aik~il~l~~~  286 (746)
T PTZ00429        223 RLVYHLPECNEWGQLYILELLAAQ--RPSDKES---AETLLTRVLPRMSHQ-NPAVVMGAIKVVANLASR  286 (746)
T ss_pred             HHHHHhhcCChHHHHHHHHHHHhc--CCCCcHH---HHHHHHHHHHHhcCC-CHHHHHHHHHHHHHhcCc
Confidence            677777665555555444444321  1221111   135677777888887 788888999999988754

>TIGR02270 conserved hypothetical protein

Probab=97.59  E-value=0.011  Score=57.85  Aligned_cols=222  Identities=11%  Similarity=0.043  Sum_probs=132.0

Q ss_pred             HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939           85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN  164 (398)
Q Consensus        85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~  164 (398)
                      ..++.++..+...... +....++..+...  +++          .++..|+..|.+ .+  ..+...+..+|..+    
T Consensus        54 ~a~~~L~~aL~~d~~~-ev~~~aa~al~~~--~~~----------~~~~~L~~~L~d-~~--~~vr~aaa~ALg~i----  113 (410)
T TIGR02270        54 AATELLVSALAEADEP-GRVACAALALLAQ--EDA----------LDLRSVLAVLQA-GP--EGLCAGIQAALGWL----  113 (410)
T ss_pred             hHHHHHHHHHhhCCCh-hHHHHHHHHHhcc--CCh----------HHHHHHHHHhcC-CC--HHHHHHHHHHHhcC----
Confidence            3567788888654431 2444444333222  111          237788888877 33  33557777777532    


Q ss_pred             chHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHH
Q 015939          165 GVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILS  244 (398)
Q Consensus       165 ~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~  244 (398)
                                 ...+..+.|+.+|++.++.++..++.++..          . . ....+.|..+|++. ++.++..|++
T Consensus       114 -----------~~~~a~~~L~~~L~~~~p~vR~aal~al~~----------r-~-~~~~~~L~~~L~d~-d~~Vra~A~r  169 (410)
T TIGR02270       114 -----------GGRQAEPWLEPLLAASEPPGRAIGLAALGA----------H-R-HDPGPALEAALTHE-DALVRAAALR  169 (410)
T ss_pred             -----------CchHHHHHHHHHhcCCChHHHHHHHHHHHh----------h-c-cChHHHHHHHhcCC-CHHHHHHHHH
Confidence                       334567888889988888888776655555          1 1 23456888888877 8889999999


Q ss_pred             HHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHh---hccC--------------
Q 015939          245 ILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALS---EEAS--------------  307 (398)
Q Consensus       245 aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~---~~~g--------------  307 (398)
                      +|..+-.          ..+++.|...+.  +.++.|...|+..|..+-. ++....+.   ...|              
T Consensus       170 aLG~l~~----------~~a~~~L~~al~--d~~~~VR~aA~~al~~lG~-~~A~~~l~~~~~~~g~~~~~~l~~~lal~  236 (410)
T TIGR02270       170 ALGELPR----------RLSESTLRLYLR--DSDPEVRFAALEAGLLAGS-RLAWGVCRRFQVLEGGPHRQRLLVLLAVA  236 (410)
T ss_pred             HHHhhcc----------ccchHHHHHHHc--CCCHHHHHHHHHHHHHcCC-HhHHHHHHHHHhccCccHHHHHHHHHHhC
Confidence            9988643          245666777774  4788888888888876643 33222211   1112              


Q ss_pred             ----cHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          308 ----CAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       308 ----~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                          .++.|..+++.  +.++..++.+|..+-             ....++.|+..+.   ++..++.|...++.+..
T Consensus       237 ~~~~a~~~L~~ll~d--~~vr~~a~~AlG~lg-------------~p~av~~L~~~l~---d~~~aR~A~eA~~~ItG  296 (410)
T TIGR02270       237 GGPDAQAWLRELLQA--AATRREALRAVGLVG-------------DVEAAPWCLEAMR---EPPWARLAGEAFSLITG  296 (410)
T ss_pred             CchhHHHHHHHHhcC--hhhHHHHHHHHHHcC-------------CcchHHHHHHHhc---CcHHHHHHHHHHHHhhC
Confidence                11222222221  113333333332222             2345677777775   44599999999998887

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.57  E-value=0.0031  Score=63.04  Aligned_cols=277  Identities=12%  Similarity=0.075  Sum_probs=172.0

Q ss_pred             HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhh--hh-hcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhh
Q 015939           84 EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRF--LA-SYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLI  160 (398)
Q Consensus        84 ~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~--i~-~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l  160 (398)
                      ++-++.|...|.+.+.+  .+.-|..+|.+++.++.+.-+.  .- -..-.+|.++.+.++ .  ++.++..|+.++...
T Consensus       127 pelLp~L~~~L~s~d~n--~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h-~--spkiRs~A~~cvNq~  201 (885)
T KOG2023|consen  127 PELLPQLCELLDSPDYN--TCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKH-P--SPKIRSHAVGCVNQF  201 (885)
T ss_pred             hhHHHHHHHHhcCCccc--ccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhC-C--ChhHHHHHHhhhhhe
Confidence            35677888888888765  6777899999999776543221  10 011357888888888 4  455668899888766


Q ss_pred             hcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHH
Q 015939          161 VNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALND  240 (398)
Q Consensus       161 ~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~  240 (398)
                      ......     ..+..-...+..+..+-...++++|.+.+.+|..|....-.|..= .-.++++..+..-++. +.++.-
T Consensus       202 i~~~~q-----al~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~p-hl~~IveyML~~tqd~-dE~VAL  274 (885)
T KOG2023|consen  202 IIIQTQ-----ALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVP-HLDNIVEYMLQRTQDV-DENVAL  274 (885)
T ss_pred             eecCcH-----HHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhccc-chHHHHHHHHHHccCc-chhHHH
Confidence            554332     221222345666666666669999999999999988763322221 2257788888877777 778888


Q ss_pred             HHHHHHHHhcCCcchHHHHHH--cCChHHHHHHhcccC---------cc-------------------------------
Q 015939          241 AILSILITLSVYRSVKAQLVE--LGMVQILTRILSDSR---------TQ-------------------------------  278 (398)
Q Consensus       241 ~a~~aL~~Ls~~~~~~~~~v~--~g~v~~Lv~lL~~~~---------~~-------------------------------  278 (398)
                      .|+.....++..+-.+..+..  ...||.|++=+.-++         .+                               
T Consensus       275 EACEFwla~aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eD  354 (885)
T KOG2023|consen  275 EACEFWLALAEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDED  354 (885)
T ss_pred             HHHHHHHHHhcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccc
Confidence            999999999988744443332  346777765332100         00                               


Q ss_pred             --------------hhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHH
Q 015939          279 --------------ILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVK  344 (398)
Q Consensus       279 --------------~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~  344 (398)
                                    -.++.-++++|..|+.  --++++..  -.+|.|-+.|.+..=.++|.++-+|..++-.     +-
T Consensus       355 dddDe~DDdD~~~dWNLRkCSAAaLDVLan--vf~~elL~--~l~PlLk~~L~~~~W~vrEagvLAlGAIAEG-----cM  425 (885)
T KOG2023|consen  355 DDDDEDDDDDAFSDWNLRKCSAAALDVLAN--VFGDELLP--ILLPLLKEHLSSEEWKVREAGVLALGAIAEG-----CM  425 (885)
T ss_pred             ccccccccccccccccHhhccHHHHHHHHH--hhHHHHHH--HHHHHHHHHcCcchhhhhhhhHHHHHHHHHH-----Hh
Confidence                          1122323333333332  11133331  2344444444445667789999999888842     11


Q ss_pred             HHHHh--cCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhcC
Q 015939          345 EAVVN--SNGLTKLLLVMQSENEGIVRKMCGDLVKVLGKA  382 (398)
Q Consensus       345 ~~~~~--~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~~  382 (398)
                      .-++.  -..+|.|+.+|... .+-+|..+++-|...+.|
T Consensus       426 ~g~~p~LpeLip~l~~~L~DK-kplVRsITCWTLsRys~w  464 (885)
T KOG2023|consen  426 QGFVPHLPELIPFLLSLLDDK-KPLVRSITCWTLSRYSKW  464 (885)
T ss_pred             hhcccchHHHHHHHHHHhccC-ccceeeeeeeeHhhhhhh
Confidence            11221  13577888888766 788999999999888885

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.56  E-value=0.0021  Score=53.52  Aligned_cols=120  Identities=11%  Similarity=0.147  Sum_probs=97.6

Q ss_pred             hhHHHHHHHHhccccC-----HHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC
Q 015939          220 ENLLSALFDYLKLAED-----QALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT  294 (398)
Q Consensus       220 ~g~i~~Lv~lL~~~~~-----~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~  294 (398)
                      .||+..|++++.++..     .+....++.++.+|-...-.-....+..-|..++..+..+..+..+.+.|+.+|.++..
T Consensus        10 ~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl   89 (160)
T PF11841_consen   10 RDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVL   89 (160)
T ss_pred             ccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHh
Confidence            6889999999998842     46778889999988776654555666667888888887545589999999999999998


Q ss_pred             CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCC
Q 015939          295 CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYK  339 (398)
Q Consensus       295 ~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~  339 (398)
                      +.......+..+=-++.|+..|+..++..+.+|+..+-.|-...+
T Consensus        90 ~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~  134 (160)
T PF11841_consen   90 NSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKAD  134 (160)
T ss_pred             CCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCC
Confidence            776655555466779999999999999999999999988887654

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.53  E-value=0.0034  Score=57.29  Aligned_cols=188  Identities=16%  Similarity=0.145  Sum_probs=127.1

Q ss_pred             hHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHH
Q 015939          181 LPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLV  260 (398)
Q Consensus       181 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v  260 (398)
                      .-.++++|++.++.++..|+..|..++.. ..+...-.+.-.++.|..++... .+  .+.|+.+|.|++....-+..+.
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~-~~~~~~~~~~~~lk~l~qL~~~~-~~--~~~a~~alVnlsq~~~l~~~ll   80 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGR-GLQSLSKYSEALLKDLTQLLKDL-DP--AEPAATALVNLSQKEELRKKLL   80 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhcccc-chhhhccchhhhHHHHHHHccCc-cc--ccHHHHHHHHHHhhHHHHHHHH
Confidence            34678999999999999999999988877 44444444466788899999887 44  7789999999999999998888


Q ss_pred             HcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhh-cc----CcHHHHHHHHhc-cCh--hHHHHHHHHHH
Q 015939          261 ELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSE-EA----SCAGRVVERVMK-VGK--TAREDAVVVIW  332 (398)
Q Consensus       261 ~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~-~~----g~v~~Lv~~l~~-~~~--~~~~~a~~~L~  332 (398)
                      +. .+..++.++.  ++.......++.+|.||+..+.....+.. ..    .++..++...-+ +..  .--.+-+.++.
T Consensus        81 ~~-~~k~l~~~~~--~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~  157 (353)
T KOG2973|consen   81 QD-LLKVLMDMLT--DPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA  157 (353)
T ss_pred             HH-HHHHHHHHhc--CcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence            76 7777888884  35567888999999999998877665531 11    344445544443 222  22356777888


Q ss_pred             HhhccCCChhHHHHHHhcCCHH-HHHHHHhhcCcHHHHHHHHHHHHH
Q 015939          333 SMCCVYKDARVKEAVVNSNGLT-KLLLVMQSENEGIVRKMCGDLVKV  378 (398)
Q Consensus       333 ~l~~~~~~~~~~~~~~~~g~~~-~Ll~~l~~~~~~~~k~~A~~lL~~  378 (398)
                      +|+..   +..|........++ ..+..+.+.++...|+.-+..|++
T Consensus       158 nls~~---~~gR~l~~~~k~~p~~kll~ft~~~s~vRr~GvagtlkN  201 (353)
T KOG2973|consen  158 NLSQF---EAGRKLLLEPKRFPDQKLLPFTSEDSQVRRGGVAGTLKN  201 (353)
T ss_pred             HHhhh---hhhhhHhcchhhhhHhhhhcccccchhhhccchHHHHHh
Confidence            88876   34555555444332 222223333333344444555555

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.50  E-value=0.049  Score=50.39  Aligned_cols=277  Identities=12%  Similarity=0.098  Sum_probs=172.0

Q ss_pred             HHHHHHcCCCCchhHHHHHHHHHHHhhhhhhh----hhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc
Q 015939           90 WIEKIKSENESENSCVDYLVKVAKFATGCEAN----RRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG  165 (398)
Q Consensus        90 l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~----r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~  165 (398)
                      |-.-|..++.+  ...-+++.+..+..+.+.|    ...++++ |..+.++.++.. .+  .++...|...+..++....
T Consensus        87 LQrGLiaddas--VKiLackqigcilEdcDtnaVseillvvNa-eilklildcIgg-ed--deVAkAAiesikrialfpa  160 (524)
T KOG4413|consen   87 LQRGLIADDAS--VKILACKQIGCILEDCDTNAVSEILLVVNA-EILKLILDCIGG-ED--DEVAKAAIESIKRIALFPA  160 (524)
T ss_pred             HHhcccCCcch--hhhhhHhhhhHHHhcCchhhHHHHHHHhhh-hHHHHHHHHHcC-Cc--HHHHHHHHHHHHHHHhcHH
Confidence            33444455544  5555666666666555533    2345677 999999999877 33  4566888888888887655


Q ss_pred             hHHHhhHhhhccCCChH--HHHHHHhcCChhhHHHHHHHHHHhhc-CchhHHHhhchhhHHHHHHHHhccccCHHHHHHH
Q 015939          166 VKEKLNRLILNTYNCLP--LFLEILREGNLDSKIGSIKILDSISL-DNESKRRVLETENLLSALFDYLKLAEDQALNDAI  242 (398)
Q Consensus       166 ~~~~~~~~il~~~g~i~--~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a  242 (398)
                      .-    .. +-.+....  .+.++--..+.-+|.+....+-.+.+ .++....... +|.+..|.+=|+...|.-+...+
T Consensus       161 al----ea-iFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckk-SGLldlLeaElkGteDtLVianc  234 (524)
T KOG4413|consen  161 AL----EA-IFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKK-SGLLDLLEAELKGTEDTLVIANC  234 (524)
T ss_pred             HH----HH-hcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhh-hhHHHHHHHHhcCCcceeehhhH
Confidence            41    22 33333332  23333334455566666666665544 4666666655 89999998888875577788899


Q ss_pred             HHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHH----HHHHhhc-cCcHHHHHHHHh
Q 015939          243 LSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEG----RLALSEE-ASCAGRVVERVM  317 (398)
Q Consensus       243 ~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~----~~~i~~~-~g~v~~Lv~~l~  317 (398)
                      +...+.|....-.+..+...|.|+.+..+++..+++|--.-.++.....+-+....    -+++.+. .-+|....+++.
T Consensus       235 iElvteLaeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiE  314 (524)
T KOG4413|consen  235 IELVTELAETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIE  314 (524)
T ss_pred             HHHHHHHHHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhh
Confidence            99999999888888888899999999999986666665555566555554442221    1122210 123555556666


Q ss_pred             ccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCC--HHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          318 KVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNG--LTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       318 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~--~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      ..++..++.|+.+|..|....   +-...+...|-  ...++...-..+...-++.|..+|..++.
T Consensus       315 mnDpdaieaAiDalGilGSnt---eGadlllkTgppaaehllarafdqnahakqeaaihaLaaIag  377 (524)
T KOG4413|consen  315 MNDPDAIEAAIDALGILGSNT---EGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAG  377 (524)
T ss_pred             cCCchHHHHHHHHHHhccCCc---chhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhc
Confidence            789999999999999888653   44444544443  44444333222112223344445555554

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.46  E-value=0.00074  Score=60.74  Aligned_cols=183  Identities=17%  Similarity=0.143  Sum_probs=109.5

Q ss_pred             HcCCCCchhHHHHHHHHHHHhhhh--hhhhhhhh-hcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhh
Q 015939           95 KSENESENSCVDYLVKVAKFATGC--EANRRFLA-SYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLN  171 (398)
Q Consensus        95 ~~~~~~~~~~~~al~~L~~l~~~~--~~~r~~i~-~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~  171 (398)
                      +.++.+|+.+.+|+..|+.+..++  ......+. .....+..+...+.+ .  ...+...|+.++..++..-..+  ..
T Consensus        15 ~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d-~--Rs~v~~~A~~~l~~l~~~l~~~--~~   89 (228)
T PF12348_consen   15 KESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSD-L--RSKVSKTACQLLSDLARQLGSH--FE   89 (228)
T ss_dssp             HHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-H-H-----HHHHHHHHHHHHHHHHGGG--GH
T ss_pred             cCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhh-h--HHHHHHHHHHHHHHHHHHHhHh--HH
Confidence            445556999999999999999887  22233222 111233444555544 2  2356688888888887643331  01


Q ss_pred             HhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhH-HHHHHHHhccccCHHHHHHHHHHHHHhc
Q 015939          172 RLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENL-LSALFDYLKLAEDQALNDAILSILITLS  250 (398)
Q Consensus       172 ~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~-i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls  250 (398)
                      ..   -...+|.|++.+.+++..++..|..+|..+...-...      ..+ ++.+...+.+. ++.++..++..|..+.
T Consensus        90 ~~---~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~------~~~~~~~l~~~~~~K-n~~vR~~~~~~l~~~l  159 (228)
T PF12348_consen   90 PY---ADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYS------PKILLEILSQGLKSK-NPQVREECAEWLAIIL  159 (228)
T ss_dssp             HH---HHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--------HHHHHHHHHHTT-S--HHHHHHHHHHHHHHH
T ss_pred             HH---HHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH------HHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHH
Confidence            11   2356889999999988999999999999998863311      123 45556667777 8999999999999885


Q ss_pred             CCcc-hHHHHH----HcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC
Q 015939          251 VYRS-VKAQLV----ELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT  294 (398)
Q Consensus       251 ~~~~-~~~~~v----~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~  294 (398)
                      ..-. ....+-    -...++.+...+.  +.++++++.|-.++..+..
T Consensus       160 ~~~~~~~~~l~~~~~~~~l~~~l~~~l~--D~~~~VR~~Ar~~~~~l~~  206 (228)
T PF12348_consen  160 EKWGSDSSVLQKSAFLKQLVKALVKLLS--DADPEVREAARECLWALYS  206 (228)
T ss_dssp             TT-----GGG--HHHHHHHHHHHHHHHT--SS-HHHHHHHHHHHHHHHH
T ss_pred             HHccchHhhhcccchHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHHHH
Confidence            4322 111111    1336777888884  5899999999999999865

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=97.44  E-value=0.055  Score=57.16  Aligned_cols=106  Identities=12%  Similarity=0.132  Sum_probs=79.6

Q ss_pred             cchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHH
Q 015939          253 RSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIW  332 (398)
Q Consensus       253 ~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~  332 (398)
                      +.-..++-..|-+|.++..+.  .....+-..|+.+|..|+.+.-..+++. ...++..++..|++.-+.+ -.|+.+|-
T Consensus      2037 P~LADqip~LGylPK~~~Am~--~~n~s~P~SaiRVlH~Lsen~~C~~AMA-~l~~i~~~m~~mkK~~~~~-GLA~Ealk 2112 (2235)
T KOG1789|consen 2037 PNLADQLPSLGYLPKFCTAMC--LQNTSAPRSAIRVLHELSENQFCCDAMA-QLPCIDGIMKSMKKQPSLM-GLAAEALK 2112 (2235)
T ss_pred             cchhhhCCCccchHHHHHHHH--hcCCcCcHHHHHHHHHHhhccHHHHHHh-ccccchhhHHHHHhcchHH-HHHHHHHH
Confidence            334444557899999999984  3445566899999999999888888887 4467777888887633322 27888888


Q ss_pred             HhhccCCChhHHHHHHhcCCHHHHHHHHhhc
Q 015939          333 SMCCVYKDARVKEAVVNSNGLTKLLLVMQSE  363 (398)
Q Consensus       333 ~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~  363 (398)
                      .+..... .+.+..++..|.++.|+.+|...
T Consensus      2113 R~~~r~~-~eLVAQ~LK~gLvpyLL~LLd~~ 2142 (2235)
T KOG1789|consen 2113 RLMKRNT-GELVAQMLKCGLVPYLLQLLDSS 2142 (2235)
T ss_pred             HHHHHhH-HHHHHHHhccCcHHHHHHHhccc
Confidence            8876533 57888899999999999999653

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.41  E-value=5.8e-05  Score=76.70  Aligned_cols=46  Identities=30%  Similarity=0.614  Sum_probs=41.3

Q ss_pred             CcccccCccccCCC-----ceecCCCcccchhHHHHHHhcCCCCCCcccccC
Q 015939           12 NLFRCPISLDVMKS-----PVSLCTGVTYDRSSIQHWLESGHDTCPATMQIL   58 (398)
Q Consensus        12 ~~~~Cpi~~~~~~d-----Pv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l   58 (398)
                      .+-.|+||.+.|..     |-.++|||.|+..|+..|+++ ..+||.||..+
T Consensus       290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er-~qtCP~CR~~~  340 (543)
T KOG0802|consen  290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFER-QQTCPTCRTVL  340 (543)
T ss_pred             cCCeeeeechhhccccccccceeecccchHHHHHHHHHHH-hCcCCcchhhh
Confidence            35689999999999     889999999999999999986 77899999843

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.40  E-value=0.00012  Score=63.85  Aligned_cols=55  Identities=15%  Similarity=0.323  Sum_probs=47.6

Q ss_pred             CCcccccCccccCCCc----eecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCccc
Q 015939           11 PNLFRCPISLDVMKSP----VSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPN   66 (398)
Q Consensus        11 ~~~~~Cpi~~~~~~dP----v~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n   66 (398)
                      .+.|.||+|++.+++-    |+.+|||.|+..|.++.+.. ...||+|..++++.++++-
T Consensus       219 s~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~-D~v~pv~d~plkdrdiI~L  277 (303)
T KOG3039|consen  219 SKRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRK-DMVDPVTDKPLKDRDIIGL  277 (303)
T ss_pred             ccceecccchhhhcCccceEEeccCCcEeeHHHHHHhccc-cccccCCCCcCcccceEee
Confidence            4679999999999886    45689999999999999874 6789999999999987664

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=97.39  E-value=0.00017  Score=52.91  Aligned_cols=47  Identities=19%  Similarity=0.297  Sum_probs=35.9

Q ss_pred             ccccCccccCCC-ceec-CCCcccchhHHHHHHhc--CCCCCCcccccCCC
Q 015939           14 FRCPISLDVMKS-PVSL-CTGVTYDRSSIQHWLES--GHDTCPATMQILST   60 (398)
Q Consensus        14 ~~Cpi~~~~~~d-Pv~~-~~g~~~~r~~i~~~~~~--~~~~CP~~~~~l~~   60 (398)
                      -.||.|+..=.| |++. .|||.|-..||.+|++.  ....||.||++.+.
T Consensus        33 g~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~   83 (85)
T PF12861_consen   33 GCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF   83 (85)
T ss_pred             cCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence            356666665555 7665 59999999999999974  35689999988653

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.38  E-value=0.001  Score=49.89  Aligned_cols=88  Identities=19%  Similarity=0.329  Sum_probs=67.4

Q ss_pred             HHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCch
Q 015939          132 VEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNE  211 (398)
Q Consensus       132 v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~  211 (398)
                      |+.|+..|.+  +++..++..++.+|..+-               +..+++.|+.++++.++.+|..|+.+|..+.    
T Consensus         1 i~~L~~~l~~--~~~~~vr~~a~~~L~~~~---------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~----   59 (88)
T PF13646_consen    1 IPALLQLLQN--DPDPQVRAEAARALGELG---------------DPEAIPALIELLKDEDPMVRRAAARALGRIG----   59 (88)
T ss_dssp             HHHHHHHHHT--SSSHHHHHHHHHHHHCCT---------------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH----
T ss_pred             CHHHHHHHhc--CCCHHHHHHHHHHHHHcC---------------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC----
Confidence            5788888854  234566788888887442               1134899999999999999999999999772    


Q ss_pred             hHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHH
Q 015939          212 SKRRVLETENLLSALFDYLKLAEDQALNDAILSILI  247 (398)
Q Consensus       212 ~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~  247 (398)
                            . ..+++.|.+++.+..+..++..|+.+|.
T Consensus        60 ------~-~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 ------D-PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             ------H-HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             ------C-HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence                  3 5688999999988756667888888873

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.37  E-value=0.0027  Score=57.06  Aligned_cols=183  Identities=11%  Similarity=0.127  Sum_probs=108.3

Q ss_pred             hcCChhhHHHHHHHHHHhhcCc---hhHHHhhc-hhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcch-HHHHHHcC
Q 015939          189 REGNLDSKIGSIKILDSISLDN---ESKRRVLE-TENLLSALFDYLKLAEDQALNDAILSILITLSVYRSV-KAQLVELG  263 (398)
Q Consensus       189 ~~~~~~~~~~a~~~L~~L~~~~---~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~-~~~~v~~g  263 (398)
                      .+.+.+.|..|..-|..+....   +....+.. ....+..++..+.+. ...+...|+.++..|+..-.. -...++ .
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~-Rs~v~~~A~~~l~~l~~~l~~~~~~~~~-~   94 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDL-RSKVSKTACQLLSDLARQLGSHFEPYAD-I   94 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH----HHHHHHHHHHHHHHHHGGGGHHHHH-H
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhh-HHHHHHHHHHHHHHHHHHHhHhHHHHHH-H
Confidence            4568999999999999887665   33333322 123445777777776 566889999999999754332 222333 3


Q ss_pred             ChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCC--Ch
Q 015939          264 MVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYK--DA  341 (398)
Q Consensus       264 ~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~--~~  341 (398)
                      .+|.|++.+.  +...-+.+.|..+|..+...-..-..+.     ++.+...+...++.++..++..|..+....+  ..
T Consensus        95 ~l~~Ll~~~~--~~~~~i~~~a~~~L~~i~~~~~~~~~~~-----~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~  167 (228)
T PF12348_consen   95 LLPPLLKKLG--DSKKFIREAANNALDAIIESCSYSPKIL-----LEILSQGLKSKNPQVREECAEWLAIILEKWGSDSS  167 (228)
T ss_dssp             HHHHHHHGGG-----HHHHHHHHHHHHHHHTTS-H--HHH-----HHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----G
T ss_pred             HHHHHHHHHc--cccHHHHHHHHHHHHHHHHHCCcHHHHH-----HHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHh
Confidence            7899999994  4667888999999999987433111221     3345555667899999999999988876543  11


Q ss_pred             hHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          342 RVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       342 ~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      .......-...++.+...+. +.++.+|+.|..++..+.+
T Consensus       168 ~l~~~~~~~~l~~~l~~~l~-D~~~~VR~~Ar~~~~~l~~  206 (228)
T PF12348_consen  168 VLQKSAFLKQLVKALVKLLS-DADPEVREAARECLWALYS  206 (228)
T ss_dssp             GG--HHHHHHHHHHHHHHHT-SS-HHHHHHHHHHHHHHHH
T ss_pred             hhcccchHHHHHHHHHHHCC-CCCHHHHHHHHHHHHHHHH
Confidence            11111111234555555555 4489999999999998876

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.36  E-value=0.00048  Score=43.50  Aligned_cols=40  Identities=20%  Similarity=0.234  Sum_probs=35.3

Q ss_pred             cchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC
Q 015939          253 RSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT  294 (398)
Q Consensus       253 ~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~  294 (398)
                      ++++..+++.|+++.|+++|.  ++++++++.++++|+||+.
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~--~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLK--SEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHcC
Confidence            357888889999999999995  4789999999999999973

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.34  E-value=0.017  Score=60.75  Aligned_cols=249  Identities=15%  Similarity=0.130  Sum_probs=164.6

Q ss_pred             HHHHHHh-h--CCCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHH
Q 015939           72 LIAHWSH-Q--LTVPEQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIA  148 (398)
Q Consensus        72 ~i~~~~~-~--~p~p~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~  148 (398)
                      +.+.|.. +  .-+|+++++-.++-|-|--    .+..|+..|..+..-++=........ |+.|-++.+|.+ +..+  
T Consensus       456 AFevWLd~gse~r~PPeQLPiVLQVLLSQv----HRlRAL~LL~RFLDlGpWAV~LaLsV-GIFPYVLKLLQS-~a~E--  527 (1387)
T KOG1517|consen  456 AFEVWLDYGSESRTPPEQLPIVLQVLLSQV----HRLRALVLLARFLDLGPWAVDLALSV-GIFPYVLKLLQS-SARE--  527 (1387)
T ss_pred             HHHHHHHhccccCCChHhcchHHHHHHHHH----HHHHHHHHHHHHhccchhhhhhhhcc-chHHHHHHHhcc-chHh--
Confidence            3456663 1  2234455555554443322    57788888888887777666666667 999999999998 4332  


Q ss_pred             HHHHHHHHHH--hhhcccchHHHhhHhhhccCCChHHHHHHHhc-C--ChhhHHHHHHHHHHhhcC-chhHHHhhchhhH
Q 015939          149 VLESAVRVLN--LIVNENGVKEKLNRLILNTYNCLPLFLEILRE-G--NLDSKIGSIKILDSISLD-NESKRRVLETENL  222 (398)
Q Consensus       149 ~~~~al~~L~--~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~-~--~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~  222 (398)
                       +...+..+.  -|+.++..    ... +++.++-..++.+|+. +  +++-|.-|+.+|..+..+ .-......+ .+.
T Consensus       528 -LrpiLVFIWAKILAvD~SC----Q~d-LvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~-~~l  600 (1387)
T KOG1517|consen  528 -LRPILVFIWAKILAVDPSC----QAD-LVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLN-GNL  600 (1387)
T ss_pred             -hhhhHHHHHHHHHhcCchh----HHH-HHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhcc-ccH
Confidence             233333222  23444332    344 5566666677777776 3  557788899999999888 445555555 677


Q ss_pred             HHHHHHHhccccCHHHHHHHHHHHHHhcC-CcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCC-----H
Q 015939          223 LSALFDYLKLAEDQALNDAILSILITLSV-YRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATC-----S  296 (398)
Q Consensus       223 i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~-----~  296 (398)
                      +..-+..|.++..+=++.-.+-+|..|=. ++++|..=++.++...|+.+|+  ++.++|+..|+=+|..+..+     +
T Consensus       601 i~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~Ls--D~vpEVRaAAVFALgtfl~~~~d~fd  678 (1387)
T KOG1517|consen  601 IGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLS--DPVPEVRAAAVFALGTFLSNGSDNFD  678 (1387)
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhc--CccHHHHHHHHHHHHHHhcccccccc
Confidence            87777788775356677778888888854 5567777679999999999995  47899999999999888763     2


Q ss_pred             HHHHHH---h-------hccCcHH----HHHHHHhccChhHHHHHHHHHHHhhcc
Q 015939          297 EGRLAL---S-------EEASCAG----RVVERVMKVGKTAREDAVVVIWSMCCV  337 (398)
Q Consensus       297 ~~~~~i---~-------~~~g~v~----~Lv~~l~~~~~~~~~~a~~~L~~l~~~  337 (398)
                      +....+   .       ..+..+.    .++.++..+++.++...+.+|......
T Consensus       679 e~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g  733 (1387)
T KOG1517|consen  679 EQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEVVVALSHFVVG  733 (1387)
T ss_pred             hhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence            322222   0       0112233    666677778999988888788776653

>TIGR02270 conserved hypothetical protein

Probab=97.32  E-value=0.043  Score=53.70  Aligned_cols=119  Identities=13%  Similarity=-0.004  Sum_probs=94.8

Q ss_pred             ChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHH
Q 015939          180 CLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQL  259 (398)
Q Consensus       180 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~  259 (398)
                      ++..|+..|...+..++..++..|..          +.. .+..+.|+.+|++. ++.++..++.++..           
T Consensus        87 ~~~~L~~~L~d~~~~vr~aaa~ALg~----------i~~-~~a~~~L~~~L~~~-~p~vR~aal~al~~-----------  143 (410)
T TIGR02270        87 DLRSVLAVLQAGPEGLCAGIQAALGW----------LGG-RQAEPWLEPLLAAS-EPPGRAIGLAALGA-----------  143 (410)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHhc----------CCc-hHHHHHHHHHhcCC-ChHHHHHHHHHHHh-----------
Confidence            48999999999998899999888874          333 67788999999988 89899888877766           


Q ss_pred             HHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHh
Q 015939          260 VELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSM  334 (398)
Q Consensus       260 v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l  334 (398)
                      ......+.+..+|.  +.++.+...|+.+|..+-.           ...++.|...+.+.++.++..|+..|..+
T Consensus       144 r~~~~~~~L~~~L~--d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al~~l  205 (410)
T TIGR02270       144 HRHDPGPALEAALT--HEDALVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAGLLA  205 (410)
T ss_pred             hccChHHHHHHHhc--CCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHHHHc
Confidence            12235678999994  5899999999999988764           35566677778888999999998887655

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=97.30  E-value=8.2e-05  Score=69.88  Aligned_cols=35  Identities=14%  Similarity=0.319  Sum_probs=31.6

Q ss_pred             CCcccccCccccCCCceecCCCcccchhHHHHHHh
Q 015939           11 PNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLE   45 (398)
Q Consensus        11 ~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~   45 (398)
                      ++++.||||+..|+||++++|||+.||.|-..-..
T Consensus         2 eeelkc~vc~~f~~epiil~c~h~lc~~ca~~~~~   36 (699)
T KOG4367|consen    2 EEELKCPVCGSFYREPIILPCSHNLCQACARNILV   36 (699)
T ss_pred             cccccCceehhhccCceEeecccHHHHHHHHhhcc
Confidence            57899999999999999999999999999776543

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.29  E-value=0.11  Score=49.87  Aligned_cols=239  Identities=13%  Similarity=0.132  Sum_probs=162.0

Q ss_pred             HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhh-----h----hhhhhhhhcCCcHHHHHHHhhhccCC----cHHHHHH
Q 015939           86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGC-----E----ANRRFLASYGGFVEAVFGVLNRKRRS----EIAVLES  152 (398)
Q Consensus        86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~-----~----~~r~~i~~~~g~v~~L~~lL~~~~~~----~~~~~~~  152 (398)
                      .++.++..|.+.+.+  .....+.-++.+...+     .    ..-..+++. ++++.|+.-++.. +.    ...-..+
T Consensus       126 ~V~slL~LLgHeNtD--I~iavvdLLqELTD~Dv~~es~egAevLidaLvdg-~vlaLLvqnveRL-dEsvkeea~gv~~  201 (536)
T KOG2734|consen  126 AVQSLLELLGHENTD--IAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDG-QVLALLVQNVERL-DESVKEEADGVHN  201 (536)
T ss_pred             cHHHHHHHhcCCCch--hHHHHHHHHHHhhhhcccccccccHHHHHHHHHhc-cHHHHHHHHHHHh-hhcchhhhhhhHH
Confidence            356677777777664  5555566666666432     1    234467776 8899999888662 22    2233467


Q ss_pred             HHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcC--ChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHH
Q 015939          153 AVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREG--NLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDY  229 (398)
Q Consensus       153 al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~l  229 (398)
                      .+..+-|+..-.+.   .-.. +++.|.+.-|+.-+...  -..-+.+|..+|..+..+ ++++...+. -.++..|++-
T Consensus       202 ~L~vveNlv~~r~~---~~~~-~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~-l~GiD~lL~~  276 (536)
T KOG2734|consen  202 TLAVVENLVEVRPA---ICTE-IVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGP-LDGIDVLLRQ  276 (536)
T ss_pred             HHHHHHHHHhccHH---HHHH-HHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcC-cccHHHHHhh
Confidence            77788887765443   1233 55667777666644422  234467888999988777 568888887 6778888876


Q ss_pred             hc-----cc---cCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHH---H
Q 015939          230 LK-----LA---EDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSE---G  298 (398)
Q Consensus       230 L~-----~~---~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~---~  298 (398)
                      +.     ++   +..+..++.-.+|+.+-....|+..++...++....-+++.   .......++++|..+..+++   +
T Consensus       277 la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~---Kk~sr~SalkvLd~am~g~~gt~~  353 (536)
T KOG2734|consen  277 LAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLRE---KKVSRGSALKVLDHAMFGPEGTPN  353 (536)
T ss_pred             cchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHH---HHHhhhhHHHHHHHHHhCCCchHH
Confidence            64     22   12456678888888888899999999998899888888863   55667789999999877554   5


Q ss_pred             HHHHhhccCcHHHHHHHHhc----------cChhHHHHHHHHHHHhhcc
Q 015939          299 RLALSEEASCAGRVVERVMK----------VGKTAREDAVVVIWSMCCV  337 (398)
Q Consensus       299 ~~~i~~~~g~v~~Lv~~l~~----------~~~~~~~~a~~~L~~l~~~  337 (398)
                      ...+++ .+++..+..+..+          .-....++.+.+||.+-..
T Consensus       354 C~kfVe-~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~  401 (536)
T KOG2734|consen  354 CNKFVE-ILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN  401 (536)
T ss_pred             HHHHHH-HHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence            667774 5677766666542          2345567889999887653

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.29  E-value=0.0038  Score=61.01  Aligned_cols=264  Identities=14%  Similarity=0.142  Sum_probs=167.7

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHH
Q 015939          105 VDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLF  184 (398)
Q Consensus       105 ~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~L  184 (398)
                      ..++..|.++++.-...|.-+.++ .+++.|+.+|+. +  +..+..-++..+.|+...-++   .+.. +...|.|..|
T Consensus       407 ~a~~l~LkS~SrSV~~LRTgL~d~-~I~elLi~~Ls~-P--eimi~~~~t~~icn~vv~fsn---L~~~-fL~~~iIdvl  478 (743)
T COG5369         407 VAIVLFLKSMSRSVTFLRTGLLDY-PIVELLIDALSN-P--EIMIEFPDTIDICNKVVPFSN---LGAG-FLEKSIIDVL  478 (743)
T ss_pred             HHHHHHHHHhhHHHHHHHhhcccc-chHHHHHHHhcC-c--cceeeccchhhhhheeeeccc---hHHH-HHHhhHHHHH
Confidence            445566777777666778889998 999999999987 3  333445566777776654333   2344 6688999999


Q ss_pred             HHHHhcCChhhHHHHHHHHHHhhcCchh--HHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcc-h---HHH
Q 015939          185 LEILREGNLDSKIGSIKILDSISLDNES--KRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRS-V---KAQ  258 (398)
Q Consensus       185 v~lL~~~~~~~~~~a~~~L~~L~~~~~~--~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~-~---~~~  258 (398)
                      ++++.+.+...|.+..|.|+.+..+.++  +-.... .-++..++.+..++ +..++...+..|.|+..+.. |   +..
T Consensus       479 ~~~v~sKDdaLqans~wvlrHlmyncq~~ekf~~La-kig~~kvl~~~NDp-c~~vq~q~lQilrNftc~~~knEkskdv  556 (743)
T COG5369         479 VNLVMSKDDALQANSEWVLRHLMYNCQKNEKFKFLA-KIGVEKVLSYTNDP-CFKVQHQVLQILRNFTCDTSKNEKSKDV  556 (743)
T ss_pred             HHHhhcchhhhhhcchhhhhhhhhcCcchhhhhhHH-hcCHHHHHHHhcCc-ccccHHHHHHHHHhccccccccccccee
Confidence            9999988999999999999999888443  333444 45678899999888 88999999999999965321 2   211


Q ss_pred             HHHcC----ChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHH-hhccCcHHHHHHHHhc---------c-----
Q 015939          259 LVELG----MVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLAL-SEEASCAGRVVERVMK---------V-----  319 (398)
Q Consensus       259 ~v~~g----~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i-~~~~g~v~~Lv~~l~~---------~-----  319 (398)
                      +....    ....|++.+.  ..+|...+..+-+|.+++.++++...+ .+....+..+-++|..         +     
T Consensus       557 ~~K~~p~~ylfk~l~~k~e--~~np~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~  634 (743)
T COG5369         557 FIKATPRRYLFKRLIDKYE--ENNPMEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEH  634 (743)
T ss_pred             EEecChHHHHHHHHHHHHH--hcCchhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCccc
Confidence            11111    3344566664  245655556677777777656555444 3333333333333321         0     


Q ss_pred             ---------------------------------------ChhHHHHHHHHHHHhhcc-CC---Chh--HHHHHHhcCCHH
Q 015939          320 ---------------------------------------GKTAREDAVVVIWSMCCV-YK---DAR--VKEAVVNSNGLT  354 (398)
Q Consensus       320 ---------------------------------------~~~~~~~a~~~L~~l~~~-~~---~~~--~~~~~~~~g~~~  354 (398)
                                                             +++......++..++.-. ++   ++.  -|-.+..+.|+.
T Consensus       635 v~~p~s~~~v~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~  714 (743)
T COG5369         635 VLLPISYTIVNLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIR  714 (743)
T ss_pred             ccCccceeeecccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHH
Confidence                                                   000011112222221110 01   011  234456677788


Q ss_pred             HHHHHHhhcCcHHHHHHHHHHHHHHh
Q 015939          355 KLLLVMQSENEGIVRKMCGDLVKVLG  380 (398)
Q Consensus       355 ~Ll~~l~~~~~~~~k~~A~~lL~~l~  380 (398)
                      -.++.+|.+.++.+|+++..+|..+.
T Consensus       715 e~l~k~q~~~Sl~vrek~~taL~~l~  740 (743)
T COG5369         715 EWLVKIQAKDSLIVREKIGTALENLR  740 (743)
T ss_pred             HHHHHHhccCcHHHHHHHHHHHHhhh
Confidence            88889999888999999999998765

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=97.27  E-value=0.00013  Score=70.29  Aligned_cols=51  Identities=20%  Similarity=0.287  Sum_probs=43.5

Q ss_pred             CcccccCccccCCCceecCCCcccchhHHHHHHh----cCCCCCCcccccCCCCC
Q 015939           12 NLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLE----SGHDTCPATMQILSTKE   62 (398)
Q Consensus        12 ~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~----~~~~~CP~~~~~l~~~~   62 (398)
                      .+..|-+|.++-.||+..+|.|+|||-||.++..    ..+-+||.|...|+-+.
T Consensus       535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiDl  589 (791)
T KOG1002|consen  535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSIDL  589 (791)
T ss_pred             CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccccc
Confidence            5678999999999999999999999999988863    23478999988887553

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=97.26  E-value=0.015  Score=51.55  Aligned_cols=153  Identities=21%  Similarity=0.200  Sum_probs=110.0

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhc--cCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCC
Q 015939          103 SCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRK--RRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNC  180 (398)
Q Consensus       103 ~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~--~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~  180 (398)
                      -...|+..++-++++ ++.|..+.++ .+--.|-.+|..+  +.+..-.+-.+++++..|...++..  ..+. +...++
T Consensus        95 RVcnaL~LlQcvASH-pdTr~~FL~A-~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~e--Vi~f-Ll~TeI  169 (293)
T KOG3036|consen   95 RVCNALALLQCVASH-PDTRRAFLRA-HIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQE--VIRF-LLTTEI  169 (293)
T ss_pred             hHHHHHHHHHHHhcC-cchHHHHHHc-cChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHH--HHHH-HHHhhh
Confidence            345677777777766 7888888887 7666666777542  2233455678999999999877652  2233 668999


Q ss_pred             hHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchh-------hHHHHHHHHhccccCHHHHHHHHHHHHHhcCCc
Q 015939          181 LPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETE-------NLLSALFDYLKLAEDQALNDAILSILITLSVYR  253 (398)
Q Consensus       181 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~-------g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~  253 (398)
                      +|..++.+..|+...+.-|+.++..+..+|..-..+....       -.+..++.-|.+..++.+.+.++++..+|+.+.
T Consensus       170 VPlCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnp  249 (293)
T KOG3036|consen  170 VPLCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNP  249 (293)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCH
Confidence            9999999999999999999999999888875444443322       223333333333348899999999999999998


Q ss_pred             chHHHHH
Q 015939          254 SVKAQLV  260 (398)
Q Consensus       254 ~~~~~~v  260 (398)
                      ..|..+-
T Consensus       250 rar~aL~  256 (293)
T KOG3036|consen  250 RARAALR  256 (293)
T ss_pred             HHHHHHH
Confidence            7776654

>PF04641 Rtf2: Rtf2 RING-finger

Probab=97.24  E-value=0.00025  Score=65.12  Aligned_cols=54  Identities=17%  Similarity=0.422  Sum_probs=43.5

Q ss_pred             CCCcccccCccccCCC---ceec-CCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcc
Q 015939           10 VPNLFRCPISLDVMKS---PVSL-CTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVP   65 (398)
Q Consensus        10 ~~~~~~Cpi~~~~~~d---Pv~~-~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~   65 (398)
                      -...|.|||++..|..   -|.+ +|||.|+..+|.+.-  ....||+|+++|...|+++
T Consensus       110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k--~~~~Cp~c~~~f~~~DiI~  167 (260)
T PF04641_consen  110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK--KSKKCPVCGKPFTEEDIIP  167 (260)
T ss_pred             CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc--ccccccccCCccccCCEEE
Confidence            4567999999999954   3444 799999999999983  2456999999999887644

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.24  E-value=0.00019  Score=67.02  Aligned_cols=47  Identities=21%  Similarity=0.376  Sum_probs=40.2

Q ss_pred             ccccCccccCCC---ceecCCCcccchhHHHHHHhcCCCCCCcccccCCC
Q 015939           14 FRCPISLDVMKS---PVSLCTGVTYDRSSIQHWLESGHDTCPATMQILST   60 (398)
Q Consensus        14 ~~Cpi~~~~~~d---Pv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~   60 (398)
                      +.|-||.+-|.+   =++|||+|.|=..||..|+.+.+++||+|++....
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~  279 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRT  279 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCC
Confidence            689999999875   35789999999999999998766789999986543

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.24  E-value=0.00026  Score=62.89  Aligned_cols=49  Identities=18%  Similarity=0.196  Sum_probs=41.2

Q ss_pred             CCcccccCccccCCCceecC-CCcccchhHHHHHHh-cCCCCCCcccccCC
Q 015939           11 PNLFRCPISLDVMKSPVSLC-TGVTYDRSSIQHWLE-SGHDTCPATMQILS   59 (398)
Q Consensus        11 ~~~~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~-~~~~~CP~~~~~l~   59 (398)
                      ..+..||+|++.-..|.++- |||.||.-||..-+. ....+||.|+++..
T Consensus       237 t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~  287 (298)
T KOG2879|consen  237 TSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE  287 (298)
T ss_pred             cCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence            35668999999999999986 999999999999754 33678999997654

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=97.19  E-value=0.034  Score=51.40  Aligned_cols=222  Identities=13%  Similarity=0.177  Sum_probs=149.8

Q ss_pred             HHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHH--H
Q 015939          151 ESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALF--D  228 (398)
Q Consensus       151 ~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv--~  228 (398)
                      --++..+..+..+.+...-..-..+++.+.++.++..+-..+.++...|...|..++..++.-..++. +...+.+-  .
T Consensus       100 iLackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFe-SellDdlhlrn  178 (524)
T KOG4413|consen  100 ILACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFE-SELLDDLHLRN  178 (524)
T ss_pred             hhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcc-cccCChHHHhH
Confidence            45556555555554432111122255899999999999999999999999999999999888888887 55555543  2


Q ss_pred             HhccccCHHHHHHHHHHHHHhcC-CcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccC
Q 015939          229 YLKLAEDQALNDAILSILITLSV-YRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEAS  307 (398)
Q Consensus       229 lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g  307 (398)
                      +--.. +.-++-..+..+..+.+ .++.....-..|.+..|..=|. ...|.-+..+++.....|+....+++.+. +.|
T Consensus       179 laakc-ndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElk-GteDtLVianciElvteLaeteHgrefla-Qeg  255 (524)
T KOG4413|consen  179 LAAKC-NDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELK-GTEDTLVIANCIELVTELAETEHGREFLA-QEG  255 (524)
T ss_pred             HHhhh-hhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhc-CCcceeehhhHHHHHHHHHHHhhhhhhcc-hhh
Confidence            32223 33467778888888864 4455555557899999888886 35688889999999999999888888887 679


Q ss_pred             cHHHHHHHHhcc--ChhHHHHHHHHHHHhhccCCChhHHHHHHhcC-------CHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 015939          308 CAGRVVERVMKV--GKTAREDAVVVIWSMCCVYKDARVKEAVVNSN-------GLTKLLLVMQSENEGIVRKMCGDLVKV  378 (398)
Q Consensus       308 ~v~~Lv~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g-------~~~~Ll~~l~~~~~~~~k~~A~~lL~~  378 (398)
                      .|..+.+++...  +|-.+-.++.....+-..    .....+.++.       +++..+..+..+ ++..++.|...|..
T Consensus       256 lIdlicnIIsGadsdPfekfralmgfgkffgk----eaimdvseeaicealiiaidgsfEmiEmn-DpdaieaAiDalGi  330 (524)
T KOG4413|consen  256 LIDLICNIISGADSDPFEKFRALMGFGKFFGK----EAIMDVSEEAICEALIIAIDGSFEMIEMN-DPDAIEAAIDALGI  330 (524)
T ss_pred             HHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcc----hHHhhcCHHHHHHHHHHHHHhhHHhhhcC-CchHHHHHHHHHHh
Confidence            999999999863  333333344444333221    1111111111       233344455555 78899999999998


Q ss_pred             Hhc
Q 015939          379 LGK  381 (398)
Q Consensus       379 l~~  381 (398)
                      |..
T Consensus       331 lGS  333 (524)
T KOG4413|consen  331 LGS  333 (524)
T ss_pred             ccC
Confidence            877

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=97.17  E-value=0.0047  Score=61.81  Aligned_cols=179  Identities=12%  Similarity=0.117  Sum_probs=121.3

Q ss_pred             CCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhcc--CCChHHHHHHHhcCChhhHHHHHHHHHHh
Q 015939          129 GGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNT--YNCLPLFLEILREGNLDSKIGSIKILDSI  206 (398)
Q Consensus       129 ~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L  206 (398)
                      |.++|.|..+|.+ .+...  .|-|..+|..++.++...  .-......  .-.+|+++.+.++.++.+|..|..++.-+
T Consensus       127 pelLp~L~~~L~s-~d~n~--~EgA~~AL~KIcEDsa~~--lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~  201 (885)
T KOG2023|consen  127 PELLPQLCELLDS-PDYNT--CEGAFGALQKICEDSAQF--LDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQF  201 (885)
T ss_pred             hhHHHHHHHHhcC-Ccccc--cchhHHHHHHHHhhhHHH--HhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhhe
Confidence            4568999999998 55444  499999999999765431  00110101  23699999999999999999999999866


Q ss_pred             hcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHH
Q 015939          207 SLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSI  286 (398)
Q Consensus       207 ~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al  286 (398)
                      ..... ...+..-...++.|..+-.+. +++++++.+.+|..|......+..=-=.|+|..++..-+  +.+..+.-.|+
T Consensus       202 i~~~~-qal~~~iD~Fle~lFalanD~-~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tq--d~dE~VALEAC  277 (885)
T KOG2023|consen  202 IIIQT-QALYVHIDKFLEILFALANDE-DPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQ--DVDENVALEAC  277 (885)
T ss_pred             eecCc-HHHHHHHHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHcc--CcchhHHHHHH
Confidence            55532 233333356788888888666 999999999999988754433321112345666666664  46788999999


Q ss_pred             HHHHHHhCCHHHHHHHhhc-cCcHHHHHHHH
Q 015939          287 KMLSIVATCSEGRLALSEE-ASCAGRVVERV  316 (398)
Q Consensus       287 ~~L~~La~~~~~~~~i~~~-~g~v~~Lv~~l  316 (398)
                      .....+|..+--+..+..+ ...||.|++-|
T Consensus       278 EFwla~aeqpi~~~~L~p~l~kliPvLl~~M  308 (885)
T KOG2023|consen  278 EFWLALAEQPICKEVLQPYLDKLIPVLLSGM  308 (885)
T ss_pred             HHHHHHhcCcCcHHHHHHHHHHHHHHHHccC
Confidence            9999999977444333211 13555555543

>KOG2979 consensus Protein involved in DNA repair [General function prediction only]

Probab=97.14  E-value=0.00036  Score=61.70  Aligned_cols=45  Identities=33%  Similarity=0.333  Sum_probs=38.2

Q ss_pred             cccccCccccCCCceecC-CCcccchhHHHHHHhcC-CCCCCccccc
Q 015939           13 LFRCPISLDVMKSPVSLC-TGVTYDRSSIQHWLESG-HDTCPATMQI   57 (398)
Q Consensus        13 ~~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~~-~~~CP~~~~~   57 (398)
                      +++|||+.+...+||+.. |||.|+|..|+...... ...||+-+..
T Consensus       176 s~rdPis~~~I~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv~gC~  222 (262)
T KOG2979|consen  176 SNRDPISKKPIVNPVISKKCGHVYDRDSIMQILCDEITIRCPVLGCE  222 (262)
T ss_pred             cccCchhhhhhhchhhhcCcCcchhhhhHHHHhccCceeecccccCC
Confidence            468999999999999986 99999999999998532 3469997765

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=97.12  E-value=0.031  Score=56.82  Aligned_cols=151  Identities=9%  Similarity=0.085  Sum_probs=106.8

Q ss_pred             HHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHH---HHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHH
Q 015939          222 LLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQ---LVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEG  298 (398)
Q Consensus       222 ~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~---~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~  298 (398)
                      .+..++..|.++ +++++..|+..+..|+.--.+|..   |.-.|.  .|.+.|  ...++++.-..+++|..+...-..
T Consensus       800 i~stiL~rLnnk-sa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEyl--geeypEvLgsILgAikaI~nvigm  874 (1172)
T KOG0213|consen  800 ICSTILWRLNNK-SAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYL--GEEYPEVLGSILGAIKAIVNVIGM  874 (1172)
T ss_pred             HHHHHHHHhcCC-ChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhc--CcccHHHHHHHHHHHHHHHHhccc
Confidence            344556677787 899999999999999765444432   334443  377888  447999999999998888763322


Q ss_pred             HHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCCh-hHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015939          299 RLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDA-RVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVK  377 (398)
Q Consensus       299 ~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~  377 (398)
                      ....---.|.+|.|.-+|++...+++++++..+..+|..+++- ..++.|.   .---|+.+|.+. +..+|+.|..-+.
T Consensus       875 ~km~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkah-kK~iRRaa~nTfG  950 (1172)
T KOG0213|consen  875 TKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAH-KKEIRRAAVNTFG  950 (1172)
T ss_pred             cccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHH-HHHHHHHHHhhhh
Confidence            2221112388999999999999999999999999999876421 2344442   122467777777 7888998887777


Q ss_pred             HHhc
Q 015939          378 VLGK  381 (398)
Q Consensus       378 ~l~~  381 (398)
                      .+++
T Consensus       951 ~Iak  954 (1172)
T KOG0213|consen  951 YIAK  954 (1172)
T ss_pred             HHHH
Confidence            7766

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.12  E-value=0.00087  Score=42.28  Aligned_cols=40  Identities=30%  Similarity=0.343  Sum_probs=34.9

Q ss_pred             chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC
Q 015939          210 NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV  251 (398)
Q Consensus       210 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~  251 (398)
                      ++++..+.+ .|+++.|+.+|+++ ++++++.++++|+||+.
T Consensus         2 ~~~~~~i~~-~g~i~~L~~ll~~~-~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVD-AGGLPALVELLKSE-DEEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHH-CCCHHHHHHHHcCC-CHHHHHHHHHHHHHHcC
Confidence            347777777 89999999999977 89999999999999873

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.09  E-value=0.024  Score=55.58  Aligned_cols=170  Identities=10%  Similarity=0.072  Sum_probs=127.3

Q ss_pred             hccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCc
Q 015939          175 LNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYR  253 (398)
Q Consensus       175 l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~  253 (398)
                      +.+..+...|+++|+..+..+..-+...+.++... ...+..+.. .|.|..|+.++.+. |..++....|.|++|.-+.
T Consensus       427 L~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~-~~iIdvl~~~v~sK-DdaLqans~wvlrHlmync  504 (743)
T COG5369         427 LLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLE-KSIIDVLVNLVMSK-DDALQANSEWVLRHLMYNC  504 (743)
T ss_pred             ccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHH-hhHHHHHHHHhhcc-hhhhhhcchhhhhhhhhcC
Confidence            66788999999999987666666677778887665 566677776 89999999999988 7789999999999997655


Q ss_pred             c--hHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHH----HHHHHh---hccCcHHHHHHHHhccChhHH
Q 015939          254 S--VKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSE----GRLALS---EEASCAGRVVERVMKVGKTAR  324 (398)
Q Consensus       254 ~--~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~----~~~~i~---~~~g~v~~Lv~~l~~~~~~~~  324 (398)
                      +  .+-++...-++..++++.  .+++-.++..++.+|+|+..+..    .+.-..   -..-....|++.+...+|...
T Consensus       505 q~~ekf~~Lakig~~kvl~~~--NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~ylfk~l~~k~e~~np~~i  582 (743)
T COG5369         505 QKNEKFKFLAKIGVEKVLSYT--NDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRRYLFKRLIDKYEENNPMEI  582 (743)
T ss_pred             cchhhhhhHHhcCHHHHHHHh--cCcccccHHHHHHHHHhcccccccccccceeEEecChHHHHHHHHHHHHHhcCchhh
Confidence            4  455666777999999999  45788999999999999876221    222111   001135566777777788888


Q ss_pred             HHHHHHHHHhhccCCChhHHHHHHhc
Q 015939          325 EDAVVVIWSMCCVYKDARVKEAVVNS  350 (398)
Q Consensus       325 ~~a~~~L~~l~~~~~~~~~~~~~~~~  350 (398)
                      +..+.+|.+++...  +..+..+.+.
T Consensus       583 ~~~~yilv~~aa~d--~~l~~~V~~q  606 (743)
T COG5369         583 LEGCYILVRNAACD--DTLDYIVQSQ  606 (743)
T ss_pred             hhhHHHHHHHHhcc--chHHHHHHhH
Confidence            88899999988763  4555555543

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=97.02  E-value=0.005  Score=62.33  Aligned_cols=210  Identities=15%  Similarity=0.130  Sum_probs=133.6

Q ss_pred             HHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHH--------hhHhhhc------cC
Q 015939          113 KFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEK--------LNRLILN------TY  178 (398)
Q Consensus       113 ~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~--------~~~~il~------~~  178 (398)
                      .+-.+.+.+|.-.+   |.+..++..|.. .+-+.+..+.-+..+.+-...+.....        .... +.      -+
T Consensus       724 ~lkde~e~yrkm~~---etv~ri~~~lg~-~diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~-lg~r~kpylp  798 (1172)
T KOG0213|consen  724 DLKDEPEQYRKMVA---ETVSRIVGRLGA-ADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNA-LGGRVKPYLP  798 (1172)
T ss_pred             hhccccHHHHHHHH---HHHHHHHhcccc-ccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHH-HhhccccchH
Confidence            34344556666555   668888888876 444444445555555444333322100        0000 00      12


Q ss_pred             CChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhH--HHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcc-h
Q 015939          179 NCLPLFLEILREGNLDSKIGSIKILDSISLDNESK--RRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRS-V  255 (398)
Q Consensus       179 g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~--~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~-~  255 (398)
                      ..+...+..|++.++.+|++|+.++..|+..-..+  ..+....|.  .|...|... ++++....+.||+.+...-. .
T Consensus       799 qi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgee-ypEvLgsILgAikaI~nvigm~  875 (1172)
T KOG0213|consen  799 QICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEE-YPEVLGSILGAIKAIVNVIGMT  875 (1172)
T ss_pred             HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcc-cHHHHHHHHHHHHHHHHhcccc
Confidence            34556667888899999999999999998763333  222222454  467788777 89999888888887743211 1


Q ss_pred             HHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCC-H---HHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHH
Q 015939          256 KAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATC-S---EGRLALSEEASCAGRVVERVMKVGKTAREDAVVVI  331 (398)
Q Consensus       256 ~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~-~---~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L  331 (398)
                      +..==-.|.+|.|..+|+  +...++++++...+..++.. +   ..|+++...    --|+++|+......+.+|+..+
T Consensus       876 km~pPi~dllPrltPILk--nrheKVqen~IdLvg~IadrgpE~v~aREWMRIc----feLlelLkahkK~iRRaa~nTf  949 (1172)
T KOG0213|consen  876 KMTPPIKDLLPRLTPILK--NRHEKVQENCIDLVGTIADRGPEYVSAREWMRIC----FELLELLKAHKKEIRRAAVNTF  949 (1172)
T ss_pred             ccCCChhhhcccchHhhh--hhHHHHHHHHHHHHHHHHhcCcccCCHHHHHHHH----HHHHHHHHHHHHHHHHHHHhhh
Confidence            100012468999999995  47899999999999999983 3   246666533    2377778888889999998888


Q ss_pred             HHhhc
Q 015939          332 WSMCC  336 (398)
Q Consensus       332 ~~l~~  336 (398)
                      .-++.
T Consensus       950 G~Iak  954 (1172)
T KOG0213|consen  950 GYIAK  954 (1172)
T ss_pred             hHHHH
Confidence            76664

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.00  E-value=0.024  Score=47.29  Aligned_cols=126  Identities=14%  Similarity=0.197  Sum_probs=100.0

Q ss_pred             hccCCChHHHHHHHhcCCh------hhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhcccc-CHHHHHHHHHHHH
Q 015939          175 LNTYNCLPLFLEILREGNL------DSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAE-DQALNDAILSILI  247 (398)
Q Consensus       175 l~~~g~i~~Lv~lL~~~~~------~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~~a~~aL~  247 (398)
                      +.+.+++..|++++.+|+.      +....+..++..|..+.-.-+.... ..+|..++.++.... ++...+.|+..|-
T Consensus         7 FI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~-~~FI~Kia~~Vn~~~~d~~i~q~sLaILE   85 (160)
T PF11841_consen    7 FISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLS-DSFIKKIASYVNSSAMDASILQRSLAILE   85 (160)
T ss_pred             HHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhcc-HHHHHHHHHHHccccccchHHHHHHHHHH
Confidence            4467889999999998863      6677788888899888654455555 689999999988663 6789999999999


Q ss_pred             HhcCCcchHHHHH-HcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC--CHHHHHHHh
Q 015939          248 TLSVYRSVKAQLV-ELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT--CSEGRLALS  303 (398)
Q Consensus       248 ~Ls~~~~~~~~~v-~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~--~~~~~~~i~  303 (398)
                      ++..++......| ++=-++.|+..|+.  ++++++.+|+..+-.|-.  ++..|+++.
T Consensus        86 s~Vl~S~~ly~~V~~evt~~~Li~hLq~--~~~~iq~naiaLinAL~~kA~~~~r~~i~  142 (160)
T PF11841_consen   86 SIVLNSPKLYQLVEQEVTLESLIRHLQV--SNQEIQTNAIALINALFLKADDSKRKEIA  142 (160)
T ss_pred             HHHhCCHHHHHHHhccCCHHHHHHHHHc--CCHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence            9998888766666 55578999999964  789999999999999754  445555555

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=96.99  E-value=0.019  Score=56.94  Aligned_cols=158  Identities=16%  Similarity=0.192  Sum_probs=116.5

Q ss_pred             HHHHHHHhhcCchhHHHhhchhhHHHHHHHHh---------ccccCHHHHHHHHHHHHHhcCCc-chHHHHHHcCChHHH
Q 015939          199 SIKILDSISLDNESKRRVLETENLLSALFDYL---------KLAEDQALNDAILSILITLSVYR-SVKAQLVELGMVQIL  268 (398)
Q Consensus       199 a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL---------~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~~v~~g~v~~L  268 (398)
                      |+.+|+.++.++.+...+.. ..++..|+++-         ....++++...|+++|.|+.... ..+..+++.|..+.+
T Consensus         1 ~L~~LRiLsRd~~~~~~l~~-~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l   79 (446)
T PF10165_consen    1 CLETLRILSRDPTGLDPLFT-EEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL   79 (446)
T ss_pred             CHHHHHHHccCcccchhhcc-HHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence            35688999999988888887 67888888886         33357889999999999998655 577778899999999


Q ss_pred             HHHhcccC---cchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhc-------c----------ChhHHHHH
Q 015939          269 TRILSDSR---TQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMK-------V----------GKTAREDA  327 (398)
Q Consensus       269 v~lL~~~~---~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~-------~----------~~~~~~~a  327 (398)
                      ++.|+...   .+.++.-..+.+|.-++. .++.+..+..+.+++..++..+..       .          +......+
T Consensus        80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei  159 (446)
T PF10165_consen   80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI  159 (446)
T ss_pred             HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence            99997431   256778889999988876 778888888777888888887754       0          12224577


Q ss_pred             HHHHHHhhccCCChhHHHHHHhcCCHHHHHHHH
Q 015939          328 VVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVM  360 (398)
Q Consensus       328 ~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l  360 (398)
                      +.++.|+..+.+....   -...+.++.++.++
T Consensus       160 LKllFNit~~~~~~~~---~~~~~~~~~l~~il  189 (446)
T PF10165_consen  160 LKLLFNITLHYPKSVP---EEFSPSIPHLVSIL  189 (446)
T ss_pred             HHHHHHhhhccCcccc---hhhhHHHHHHHHHH
Confidence            8888999887642211   12344455555554

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=96.96  E-value=0.077  Score=47.17  Aligned_cols=177  Identities=14%  Similarity=0.188  Sum_probs=121.8

Q ss_pred             hhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhcc----ccCHHHHHHHHHHHHHhcCCcc--hHHHHHHcCChHH
Q 015939          194 DSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKL----AEDQALNDAILSILITLSVYRS--VKAQLVELGMVQI  267 (398)
Q Consensus       194 ~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~----~~~~~~~~~a~~aL~~Ls~~~~--~~~~~v~~g~v~~  267 (398)
                      .-..+|..+|..++.+++.|..+.. ...--.|-.+|..    ...+-.+-.++.++..|..+++  ....+...++||.
T Consensus        94 nRVcnaL~LlQcvASHpdTr~~FL~-A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPl  172 (293)
T KOG3036|consen   94 NRVCNALALLQCVASHPDTRRAFLR-AHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPL  172 (293)
T ss_pred             chHHHHHHHHHHHhcCcchHHHHHH-ccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHH
Confidence            3346788899999999999988886 4443344455543    3345578899999999987554  4455568999999


Q ss_pred             HHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccC-------cHHHHHHHH-hccChhHHHHHHHHHHHhhccCC
Q 015939          268 LTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEAS-------CAGRVVERV-MKVGKTAREDAVVVIWSMCCVYK  339 (398)
Q Consensus       268 Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g-------~v~~Lv~~l-~~~~~~~~~~a~~~L~~l~~~~~  339 (398)
                      .++.+.  .+++..+..|.-++.-+-.++.|-..+.....       .+..+|.-+ +.+++..-++++++..+|+.+  
T Consensus       173 CLrime--~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdn--  248 (293)
T KOG3036|consen  173 CLRIME--SGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDN--  248 (293)
T ss_pred             HHHHHh--cccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCC--
Confidence            999994  47788888899999999888888776654332       222223223 237899999999999999964  


Q ss_pred             ChhHHHHHHh-------cCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          340 DARVKEAVVN-------SNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       340 ~~~~~~~~~~-------~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                       ++.+..+..       .|-+..+   ++.  ++..|+-=..+++++..
T Consensus       249 -prar~aL~~clPd~Lrd~tfs~~---l~~--D~~~k~~l~~ll~~l~~  291 (293)
T KOG3036|consen  249 -PRARAALRSCLPDQLRDGTFSLL---LKD--DPETKQWLQQLLKNLCT  291 (293)
T ss_pred             -HHHHHHHHhhCcchhccchHHHH---Hhc--ChhHHHHHHHHHHHhcc
Confidence             555544332       3333333   333  46777777777777654

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=96.96  E-value=0.0025  Score=43.30  Aligned_cols=55  Identities=18%  Similarity=0.089  Sum_probs=43.5

Q ss_pred             hhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHh
Q 015939          193 LDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITL  249 (398)
Q Consensus       193 ~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L  249 (398)
                      +.+|..|+++|.+++........-.. ..+++.|+.+|+++ +++++.+|+++|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~-~~~~~~L~~~L~d~-~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYL-PELLPALIPLLQDD-DDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHH-HHHHHHHHHHTTSS-SHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHH-HHHHHHHHHHHcCC-CHHHHHHHHHHHhcC
Confidence            36789999999998876433333233 68999999999988 779999999999875

...

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=96.95  E-value=0.36  Score=48.12  Aligned_cols=268  Identities=14%  Similarity=0.135  Sum_probs=128.6

Q ss_pred             HHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchH
Q 015939           88 RVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVK  167 (398)
Q Consensus        88 ~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~  167 (398)
                      +.|-.++++....  ...++++.+..++.++- .-+.+.   -+|..|-.+|++ ..  ...+..|+++|..++...+..
T Consensus       267 pfL~~wls~k~em--V~lE~Ar~v~~~~~~nv-~~~~~~---~~vs~L~~fL~s-~r--v~~rFsA~Riln~lam~~P~k  337 (898)
T COG5240         267 PFLNSWLSDKFEM--VFLEAARAVCALSEENV-GSQFVD---QTVSSLRTFLKS-TR--VVLRFSAMRILNQLAMKYPQK  337 (898)
T ss_pred             HHHHHHhcCcchh--hhHHHHHHHHHHHHhcc-CHHHHH---HHHHHHHHHHhc-ch--HHHHHHHHHHHHHHHhhCCce
Confidence            3444455554444  66788888877775531 112222   346666777777 33  334589999999998754420


Q ss_pred             --HHhh--HhhhccC-C--ChHHHHHHHhcCChhhHHHHHHHHHHhhcC--chhHHHhhchhhHHHHHHHHhccccCHHH
Q 015939          168 --EKLN--RLILNTY-N--CLPLFLEILREGNLDSKIGSIKILDSISLD--NESKRRVLETENLLSALFDYLKLAEDQAL  238 (398)
Q Consensus       168 --~~~~--~~il~~~-g--~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~  238 (398)
                        ..|+  +..+.+. .  ..=.+..+|+.|+.+....-...+-++..+  ++.|..+.+   +++.|--+.     |.-
T Consensus       338 v~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~id---a~rsLsl~F-----p~k  409 (898)
T COG5240         338 VSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAID---ALRSLSLLF-----PSK  409 (898)
T ss_pred             eeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHH---HHHHHHhhC-----cHH
Confidence              0000  0001000 0  111222334444333333333333333222  222222111   121111111     111


Q ss_pred             HHHHHHHHHHhcC---CcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-C--HHHHHHHh---hccC--
Q 015939          239 NDAILSILITLSV---YRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-C--SEGRLALS---EEAS--  307 (398)
Q Consensus       239 ~~~a~~aL~~Ls~---~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~--~~~~~~i~---~~~g--  307 (398)
                      +..-+..|.+.-.   +-+.+..     +|+++.+++.   .+|+.++.|+..|+..-. +  ++..-.|.   ..+|  
T Consensus       410 ~~s~l~FL~~~L~~eGg~eFK~~-----~Vdaisd~~~---~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~  481 (898)
T COG5240         410 KLSYLDFLGSSLLQEGGLEFKKY-----MVDAISDAME---NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPR  481 (898)
T ss_pred             HHHHHHHHHHHHHhcccchHHHH-----HHHHHHHHHh---hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCC
Confidence            2222222222211   1122332     3455666664   367778888777666533 2  22222221   1111  


Q ss_pred             ------cHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          308 ------CAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       308 ------~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                            .|.++..-+.-.+.-++..|+.+|...+.+..|.     .....+...|-+.+... ++++|+.|..+|+.+..
T Consensus       482 a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d~-----~~~~sv~~~lkRclnD~-DdeVRdrAsf~l~~~~~  555 (898)
T COG5240         482 AKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISDV-----VSPQSVENALKRCLNDQ-DDEVRDRASFLLRNMRL  555 (898)
T ss_pred             CCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCcccc-----ccHHHHHHHHHHHhhcc-cHHHHHHHHHHHHhhhh
Confidence                  2444444444467788889999987777653321     12222334455566555 89999999999999987


Q ss_pred             C-CCCC
Q 015939          382 A-SGLG  386 (398)
Q Consensus       382 ~-~~~~  386 (398)
                      . .|..
T Consensus       556 ~da~~p  561 (898)
T COG5240         556 SDACEP  561 (898)
T ss_pred             hhhhhc
Confidence            3 3443

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.95  E-value=0.48  Score=48.46  Aligned_cols=251  Identities=14%  Similarity=0.145  Sum_probs=148.9

Q ss_pred             HHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchH
Q 015939           88 RVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVK  167 (398)
Q Consensus        88 ~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~  167 (398)
                      ..++..|+++..=  .+..|+..+..+.-..+   +.+.   -..|.|++-|+. +  ++.++..|+.++..|+..++. 
T Consensus       147 ~Dv~tLL~sskpY--vRKkAIl~lykvFLkYP---eAlr---~~FprL~EkLeD-p--Dp~V~SAAV~VICELArKnPk-  214 (877)
T KOG1059|consen  147 DDVFTLLNSSKPY--VRKKAILLLYKVFLKYP---EALR---PCFPRLVEKLED-P--DPSVVSAAVSVICELARKNPQ-  214 (877)
T ss_pred             HHHHHHHhcCchH--HHHHHHHHHHHHHHhhh---HhHh---hhHHHHHHhccC-C--CchHHHHHHHHHHHHHhhCCc-
Confidence            3344555555443  56677777666553322   2232   345666777766 3  345668888888888875552 


Q ss_pred             HHhhHhhhccCCChHHHHHHHhcC-ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHH
Q 015939          168 EKLNRLILNTYNCLPLFLEILREG-NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSIL  246 (398)
Q Consensus       168 ~~~~~~il~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL  246 (398)
                          .+ +   ..-|.+..+|... +-=+...-..++..|+--+   ..++.  -.+++|..++.+..-..+.-.+..++
T Consensus       215 ----ny-L---~LAP~ffkllttSsNNWmLIKiiKLF~aLtplE---PRLgK--KLieplt~li~sT~AmSLlYECvNTV  281 (877)
T KOG1059|consen  215 ----NY-L---QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLE---PRLGK--KLIEPITELMESTVAMSLLYECVNTV  281 (877)
T ss_pred             ----cc-c---cccHHHHHHHhccCCCeehHHHHHHHhhccccC---chhhh--hhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence                22 2   3456667777544 2222334445555555442   23332  46788888887763334444444444


Q ss_pred             H--HhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChhH
Q 015939          247 I--TLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKTA  323 (398)
Q Consensus       247 ~--~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~  323 (398)
                      .  +++.+..+....+.. +|..|=.++.  ++|+.++-.++-++.-++. ++...++--      ..++..|.+.++..
T Consensus       282 Va~s~s~g~~d~~asiqL-CvqKLr~fie--dsDqNLKYlgLlam~KI~ktHp~~Vqa~k------dlIlrcL~DkD~SI  352 (877)
T KOG1059|consen  282 VAVSMSSGMSDHSASIQL-CVQKLRIFIE--DSDQNLKYLGLLAMSKILKTHPKAVQAHK------DLILRCLDDKDESI  352 (877)
T ss_pred             eeehhccCCCCcHHHHHH-HHHHHhhhhh--cCCccHHHHHHHHHHHHhhhCHHHHHHhH------HHHHHHhccCCchh
Confidence            3  333343333333333 5677777773  4788888889988888876 665554443      35788888999999


Q ss_pred             HHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHH-hhcCcHHHHHHHHHHHHHHhc
Q 015939          324 REDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVM-QSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       324 ~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l-~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      +-.|+..|..|..    .++..+++     ..|+..+ ..+++.-.-+....++..++.
T Consensus       353 RlrALdLl~gmVs----kkNl~eIV-----k~LM~~~~~ae~t~yrdell~~II~iCS~  402 (877)
T KOG1059|consen  353 RLRALDLLYGMVS----KKNLMEIV-----KTLMKHVEKAEGTNYRDELLTRIISICSQ  402 (877)
T ss_pred             HHHHHHHHHHHhh----hhhHHHHH-----HHHHHHHHhccchhHHHHHHHHHHHHhhh
Confidence            9999999999886    34444443     3444444 444334444556667777776

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=96.91  E-value=0.00061  Score=62.99  Aligned_cols=46  Identities=28%  Similarity=0.525  Sum_probs=39.5

Q ss_pred             CcccccCccccCCCc-------------eecCCCcccchhHHHHHHhcCCCCCCcccccC
Q 015939           12 NLFRCPISLDVMKSP-------------VSLCTGVTYDRSSIQHWLESGHDTCPATMQIL   58 (398)
Q Consensus        12 ~~~~Cpi~~~~~~dP-------------v~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l   58 (398)
                      .+-.|-||.+-|-+|             =-+||||.+--+|+..|.+. ..+||.||.++
T Consensus       286 ~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ER-qQTCPICr~p~  344 (491)
T COG5243         286 SDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLER-QQTCPICRRPV  344 (491)
T ss_pred             CCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHh-ccCCCcccCcc
Confidence            566899999996554             58999999999999999985 67999999884

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=96.83  E-value=0.007  Score=60.10  Aligned_cols=193  Identities=18%  Similarity=0.184  Sum_probs=127.7

Q ss_pred             CcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhh-------c---------cCCChHHHHHHHhcCCh
Q 015939          130 GFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLIL-------N---------TYNCLPLFLEILREGNL  193 (398)
Q Consensus       130 g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il-------~---------~~g~i~~Lv~lL~~~~~  193 (398)
                      |.+...++.|.. .+-+.+..+.-...+.+....++..+   ..|+       +         -+..+...+..|++.++
T Consensus       543 ~~vsri~~~lg~-~~~dErleerl~d~il~Afqeq~~t~---~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p  618 (975)
T COG5181         543 GLVSRIFSRLGR-LGFDERLEERLYDSILNAFQEQDTTV---GLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPP  618 (975)
T ss_pred             HHHHHHHHhccc-ccccHHHHHHHHHHHHHHHHhccccc---cEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCc
Confidence            778888888876 33344444666666655554444310   1111       1         13456777888999999


Q ss_pred             hhHHHHHHHHHHhhcCchhH---HHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHH-HHHHcCChHHHH
Q 015939          194 DSKIGSIKILDSISLDNESK---RRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKA-QLVELGMVQILT  269 (398)
Q Consensus       194 ~~~~~a~~~L~~L~~~~~~~---~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~-~~v~~g~v~~Lv  269 (398)
                      .+|++|+.+...|+..-.++   ..+.. .|.  .|..-|... ++++....+.|++.+.+....+. +==-.|.+|.|.
T Consensus       619 ~vR~~aadl~~sl~~vlk~c~e~~~l~k-lg~--iLyE~lge~-ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~lt  694 (975)
T COG5181         619 DVRIRAADLMGSLAKVLKACGETKELAK-LGN--ILYENLGED-YPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLT  694 (975)
T ss_pred             cHHHHHHHHHHHHHHHHHhcchHHHHHH-HhH--HHHHhcCcc-cHHHHHHHHHHHHHHhhhhcccccCCchhhcccccc
Confidence            99999999999887652221   12222 332  356667666 89999999999888854332211 001257999999


Q ss_pred             HHhcccCcchhhHHHHHHHHHHHhCCH-H---HHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhc
Q 015939          270 RILSDSRTQILTVEKSIKMLSIVATCS-E---GRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCC  336 (398)
Q Consensus       270 ~lL~~~~~~~~~~~~al~~L~~La~~~-~---~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~  336 (398)
                      .+|+  +...+++.+....+..++... +   .|+++...    -.|+.+|++.+.+.+.+|...+.-++.
T Consensus       695 PILr--nkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIc----feLvd~Lks~nKeiRR~A~~tfG~Is~  759 (975)
T COG5181         695 PILR--NKHQKVVANTIALVGTICMNSPEYIGVREWMRIC----FELVDSLKSWNKEIRRNATETFGCISR  759 (975)
T ss_pred             Hhhh--hhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHH----HHHHHHHHHhhHHHHHhhhhhhhhHHh
Confidence            9995  468899999999999998733 2   45565433    237777888899999999888766654

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=96.83  E-value=0.024  Score=59.62  Aligned_cols=206  Identities=15%  Similarity=0.149  Sum_probs=145.4

Q ss_pred             hHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHH--hcCCcchHHH
Q 015939          181 LPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILIT--LSVYRSVKAQ  258 (398)
Q Consensus       181 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~--Ls~~~~~~~~  258 (398)
                      +|-++++|-+.  -=|.+|..+|..+..-.....-+.-.-|++|-.++||++. - ...+..+..||.  |+.++..+..
T Consensus       474 LPiVLQVLLSQ--vHRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~-a-~ELrpiLVFIWAKILAvD~SCQ~d  549 (1387)
T KOG1517|consen  474 LPIVLQVLLSQ--VHRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSS-A-RELRPILVFIWAKILAVDPSCQAD  549 (1387)
T ss_pred             cchHHHHHHHH--HHHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccc-h-HhhhhhHHHHHHHHHhcCchhHHH
Confidence            44444444321  1134455555555444444444444479999999999997 3 356677777773  5778778888


Q ss_pred             HHHcCChHHHHHHhcc-cCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhcc-ChhHHHHHHHHHHHhh
Q 015939          259 LVELGMVQILTRILSD-SRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKV-GKTAREDAVVVIWSMC  335 (398)
Q Consensus       259 ~v~~g~v~~Lv~lL~~-~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~-~~~~~~~a~~~L~~l~  335 (398)
                      ++..++-...++.|.. +.-+++-+..|+=+|..+.. ..-++++.. +.+.+..=.+.|.++ .+..++..+-+|..|-
T Consensus       550 LvKe~g~~YF~~vL~~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl-~~~li~iCle~lnd~~~pLLrQW~~icLG~LW  628 (1387)
T KOG1517|consen  550 LVKENGYKYFLQVLDPSQAIPPEQRTMAAFVLAVIVRNFKLGQKACL-NGNLIGICLEHLNDDPEPLLRQWLCICLGRLW  628 (1387)
T ss_pred             HHhccCceeEEEEecCcCCCCHHHHHHHHHHHHHHHcccchhHHHhc-cccHHHHHHHHhcCCccHHHHHHHHHHHHHHh
Confidence            9988888888888863 22244666677888888887 556777777 578888778888775 6888999999999998


Q ss_pred             ccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhcCCCCCCCCCCcccc
Q 015939          336 CVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGKASGLGNYQTKTAHI  395 (398)
Q Consensus       336 ~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~~~~~~~~~~~~~~~  395 (398)
                      .+.  +..+-.-.+.++.++|..+|... .+++|..|..+|..|-+ +-.++-|.++.|+
T Consensus       629 ~d~--~~Arw~G~r~~AhekL~~~LsD~-vpEVRaAAVFALgtfl~-~~~d~fde~~~~~  684 (1387)
T KOG1517|consen  629 EDY--DEARWSGRRDNAHEKLILLLSDP-VPEVRAAAVFALGTFLS-NGSDNFDEQTLVV  684 (1387)
T ss_pred             hhc--chhhhccccccHHHHHHHHhcCc-cHHHHHHHHHHHHHHhc-ccccccchhhhhh
Confidence            764  45666677899999999999765 89999999999988877 2223455555443

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.71  E-value=0.053  Score=55.66  Aligned_cols=243  Identities=14%  Similarity=0.115  Sum_probs=157.2

Q ss_pred             HhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHH-hhhcccchHHHhhHhhhccCCChHHHHHHHhcCC
Q 015939          114 FATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLN-LIVNENGVKEKLNRLILNTYNCLPLFLEILREGN  192 (398)
Q Consensus       114 l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~-~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~  192 (398)
                      ++.....-|...++. |+.+.|+++... ..+.  .......+|. .+.....     +     ...+++++.+.+++..
T Consensus       489 ~aA~~K~~~~~~Ik~-~~~~aLlrl~~~-q~e~--akl~~~~aL~~~i~f~~~-----~-----~~~v~~~~~s~~~~d~  554 (748)
T KOG4151|consen  489 LAAKEKYERAKKIKP-GGYEALLRLGQQ-QFEE--AKLKWYHALAGKIDFPGE-----R-----SYEVVKPLDSALHNDE  554 (748)
T ss_pred             HhhhhHHhcCccccc-cHHHHHHHHHHH-hchH--HHHHHHHHHhhhcCCCCC-----c-----hhhhhhhhcchhhhhH
Confidence            333334456667777 999999999877 3322  2244555555 3322221     1     2356777777777652


Q ss_pred             -hhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcc-hHHHHHH-cCChHHH
Q 015939          193 -LDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRS-VKAQLVE-LGMVQIL  268 (398)
Q Consensus       193 -~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~-~~~~~v~-~g~v~~L  268 (398)
                       .--...+..++.||+.. +..|..+.. .-+++.+-.++... ++-.+++++..+.||...+. ....+++ ....+..
T Consensus       555 ~~~en~E~L~altnLas~s~s~r~~i~k-e~~~~~ie~~~~ee-~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w  632 (748)
T KOG4151|consen  555 KGLENFEALEALTNLASISESDRQKILK-EKALGKIEELMTEE-NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLW  632 (748)
T ss_pred             HHHHHHHHHHHhhcccCcchhhHHHHHH-HhcchhhHHHhhcc-cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHH
Confidence             22334578889999877 456666665 45555555555555 78899999999999988776 4455566 5566666


Q ss_pred             HHHhcccCcchhhHHHHHHHHHHHhCCHHHHHH-HhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHH
Q 015939          269 TRILSDSRTQILTVEKSIKMLSIVATCSEGRLA-LSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAV  347 (398)
Q Consensus       269 v~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~-i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  347 (398)
                      ...+.  ..+......+++++..++...++... +.+.......++.++.+.+..+|...+.+..++...  ..+..+.+
T Consensus       633 ~~~~e--~~~E~~~lA~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~--~~ei~~~~  708 (748)
T KOG4151|consen  633 NLNLE--VADEKFELAGAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEA--LFEIAEKI  708 (748)
T ss_pred             HHHHH--hhhhHHhhhccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHH--HHHHHHHh
Confidence            66663  25666667777888867665554443 544456788899999999999999999999996543  35677777


Q ss_pred             HhcCCHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015939          348 VNSNGLTKLLLVMQSENEGIVRKMCGDLVK  377 (398)
Q Consensus       348 ~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~  377 (398)
                      .....++-+. -++...-...++.|...|.
T Consensus       709 ~~~~~~~~l~-~~~~~~~a~~~~~~~~~l~  737 (748)
T KOG4151|consen  709 FETEVMELLS-GLQKLNRAPKREDAAPCLS  737 (748)
T ss_pred             ccchHHHHHH-HHHHhhhhhhhhhhhhHHH
Confidence            7777766443 3333323445555544443

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.70  E-value=0.25  Score=49.05  Aligned_cols=278  Identities=11%  Similarity=0.054  Sum_probs=166.7

Q ss_pred             HHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccch
Q 015939           87 VRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGV  166 (398)
Q Consensus        87 i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~  166 (398)
                      +...+.++..+++.  .+..+..-+-.+.++-..-+..--..+++||.|-.-+.. .++..  +...+.-|..+-.- ++
T Consensus       126 iFdvL~klsaDsd~--~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~-~n~~t--R~flv~Wl~~Lds~-P~  199 (675)
T KOG0212|consen  126 IFDVLCKLSADSDQ--NVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYV-INPMT--RQFLVSWLYVLDSV-PD  199 (675)
T ss_pred             HHHHHHHHhcCCcc--ccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhc-CCchH--HHHHHHHHHHHhcC-Cc
Confidence            44444445444443  455555555555544222222111122455555444433 33332  24445544444322 22


Q ss_pred             HHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHH
Q 015939          167 KEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSIL  246 (398)
Q Consensus       167 ~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL  246 (398)
                          ...+-.-...++-|..+|...+.++|..+-.+|.++...=.++....+....++.++.-+.++ ++..+..|+.-|
T Consensus       200 ----~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss-~~~iq~~al~Wi  274 (675)
T KOG0212|consen  200 ----LEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSS-EPEIQLKALTWI  274 (675)
T ss_pred             ----HHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCC-cHHHHHHHHHHH
Confidence                243222467788889999999999997776666655433223333334356788888888888 888998888888


Q ss_pred             HHhcCCcchHHHHHHcCChHHHHHHhcccCcchh-hHHHHH---HHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChh
Q 015939          247 ITLSVYRSVKAQLVELGMVQILTRILSDSRTQIL-TVEKSI---KMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKT  322 (398)
Q Consensus       247 ~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~-~~~~al---~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~  322 (398)
                      ..+..-....--..-.|++..++..+.+  .++. +.+.+.   +.|..+.+.+...+++- -...+..+.+.+......
T Consensus       275 ~efV~i~g~~~l~~~s~il~~iLpc~s~--~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id-~~~ii~vl~~~l~~~~~~  351 (675)
T KOG0212|consen  275 QEFVKIPGRDLLLYLSGILTAILPCLSD--TEEMSIKEYAQMVNGLLLKLVSSERLKEEID-YGSIIEVLTKYLSDDREE  351 (675)
T ss_pred             HHHhcCCCcchhhhhhhhhhhcccCCCC--CccccHHHHHHHHHHHHHHHHhhhhhccccc-hHHHHHHHHHHhhcchHH
Confidence            8887654443334466788888888853  3342 333332   23555566565555532 334677777777778888


Q ss_pred             HHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhcC
Q 015939          323 AREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGKA  382 (398)
Q Consensus       323 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~~  382 (398)
                      ++-.++.-+..+-...+   ..-.......++.|+..|... ++.+-..+..++..+..+
T Consensus       352 tri~~L~Wi~~l~~~~p---~ql~~h~~~if~tLL~tLsd~-sd~vvl~~L~lla~i~~s  407 (675)
T KOG0212|consen  352 TRIAVLNWIILLYHKAP---GQLLVHNDSIFLTLLKTLSDR-SDEVVLLALSLLASICSS  407 (675)
T ss_pred             HHHHHHHHHHHHHhhCc---chhhhhccHHHHHHHHhhcCc-hhHHHHHHHHHHHHHhcC
Confidence            88888888877776543   223345577888899888765 778888888888777663

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=96.67  E-value=0.00091  Score=63.55  Aligned_cols=43  Identities=26%  Similarity=0.584  Sum_probs=37.2

Q ss_pred             ccccCccccCCCce----ecCCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939           14 FRCPISLDVMKSPV----SLCTGVTYDRSSIQHWLESGHDTCPATMQILS   59 (398)
Q Consensus        14 ~~Cpi~~~~~~dPv----~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~   59 (398)
                      =+||+|++=|.+-|    ++.|.|+|--.|+.+|+..   +||+||-..+
T Consensus       176 PTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w~~~---scpvcR~~q~  222 (493)
T KOG0804|consen  176 PTCPVCLERMDSSTTGILTILCNHSFHCSCLMKWWDS---SCPVCRYCQS  222 (493)
T ss_pred             CCcchhHhhcCccccceeeeecccccchHHHhhcccC---cChhhhhhcC
Confidence            38999999999887    5679999999999999754   8999987655

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.64  E-value=0.33  Score=48.19  Aligned_cols=193  Identities=12%  Similarity=0.209  Sum_probs=120.6

Q ss_pred             ccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCH-HHHHHHH---HHHHHhcC
Q 015939          176 NTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQ-ALNDAIL---SILITLSV  251 (398)
Q Consensus       176 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~-~~~~~a~---~aL~~Ls~  251 (398)
                      .-...++.++.=+.+..++++..|..-|..+..-....-. ...+|.+..++.++.+. .+ ..+..+.   ..|..+.+
T Consensus       247 d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l-~~~s~il~~iLpc~s~~-e~~~i~~~a~~~n~~l~~l~s  324 (675)
T KOG0212|consen  247 DYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLL-LYLSGILTAILPCLSDT-EEMSIKEYAQMVNGLLLKLVS  324 (675)
T ss_pred             CcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchh-hhhhhhhhhcccCCCCC-ccccHHHHHHHHHHHHHHHHh
Confidence            3457789999999999999999998888877666433222 33378888888888876 33 2232222   23445544


Q ss_pred             CcchHHHHHHcC-ChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHH
Q 015939          252 YRSVKAQLVELG-MVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVV  330 (398)
Q Consensus       252 ~~~~~~~~v~~g-~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~  330 (398)
                      ....... ++.| .+..|...++  ++..+.+-.++.-+..|-..-.+.--.. .....+.|.+-|.+.++.+-..++.+
T Consensus       325 ~~~~~~~-id~~~ii~vl~~~l~--~~~~~tri~~L~Wi~~l~~~~p~ql~~h-~~~if~tLL~tLsd~sd~vvl~~L~l  400 (675)
T KOG0212|consen  325 SERLKEE-IDYGSIIEVLTKYLS--DDREETRIAVLNWIILLYHKAPGQLLVH-NDSIFLTLLKTLSDRSDEVVLLALSL  400 (675)
T ss_pred             hhhhccc-cchHHHHHHHHHHhh--cchHHHHHHHHHHHHHHHhhCcchhhhh-ccHHHHHHHHhhcCchhHHHHHHHHH
Confidence            4333322 3332 4666777774  3556666667776666655333433333 34788889999999999999999999


Q ss_pred             HHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          331 IWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       331 L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      |.++|..+.++..+      ..+.-|+.+...+ ..-.+..+.-+++.+.-
T Consensus       401 la~i~~s~~~~~~~------~fl~sLL~~f~e~-~~~l~~Rg~lIIRqlC~  444 (675)
T KOG0212|consen  401 LASICSSSNSPNLR------KFLLSLLEMFKED-TKLLEVRGNLIIRQLCL  444 (675)
T ss_pred             HHHHhcCcccccHH------HHHHHHHHHHhhh-hHHHHhhhhHHHHHHHH
Confidence            99999875443221      1222333333333 33455666666666654

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.63  E-value=0.0013  Score=57.51  Aligned_cols=37  Identities=22%  Similarity=0.463  Sum_probs=32.5

Q ss_pred             CCCCcccccCccccCCCceecCCCcccchhHHHHHHh
Q 015939            9 AVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLE   45 (398)
Q Consensus         9 ~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~   45 (398)
                      .|.+.=+|.+|++.+.|||+.+-||.|||+||-+++-
T Consensus        39 siK~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il   75 (303)
T KOG3039|consen   39 SIKPFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL   75 (303)
T ss_pred             ccCCcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence            4454458999999999999999999999999999873

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=96.61  E-value=0.072  Score=48.06  Aligned_cols=153  Identities=19%  Similarity=0.191  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhcc--CCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCCh
Q 015939          104 CVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKR--RSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCL  181 (398)
Q Consensus       104 ~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~--~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i  181 (398)
                      ...|+.-++.+++ +++.|..+.++ ...-.|..+|..+.  .+-..++-.+++++..+...++.  +.-.. +...+++
T Consensus        67 VcnaLaLlQ~vAs-hpetr~~Fl~a-~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~--evi~f-Ll~tEii  141 (262)
T PF04078_consen   67 VCNALALLQCVAS-HPETRMPFLKA-HIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDP--EVISF-LLQTEII  141 (262)
T ss_dssp             HHHHHHHHHHHHH--TTTHHHHHHT-TGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--H--HHHHH-HHCTTHH
T ss_pred             HHHHHHHHHHHHc-ChHHHHHHHHc-CchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcH--HHHHH-HHhhchH
Confidence            4567777777776 58899999998 88888888886521  11234456788888888875543  12233 5588999


Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhh-------HHHHHHHHhccccCHHHHHHHHHHHHHhcCCcc
Q 015939          182 PLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETEN-------LLSALFDYLKLAEDQALNDAILSILITLSVYRS  254 (398)
Q Consensus       182 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g-------~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~  254 (398)
                      |..+..|..|+.-.|.-|..++..+..++..-..+..+..       ++..+|.-|....++.+.+...++-..|+.++.
T Consensus       142 plcLr~me~GselSKtvAtfIlqKIL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnpr  221 (262)
T PF04078_consen  142 PLCLRIMEFGSELSKTVATFILQKILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPR  221 (262)
T ss_dssp             HHHHHHHHHS-HHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTT
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHH
Confidence            9999999999999999999999999888766665554333       333344333333488999999999999999998


Q ss_pred             hHHHHHH
Q 015939          255 VKAQLVE  261 (398)
Q Consensus       255 ~~~~~v~  261 (398)
                      .+..+..
T Consensus       222 ar~aL~~  228 (262)
T PF04078_consen  222 AREALRQ  228 (262)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8877653

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=96.60  E-value=0.0015  Score=59.60  Aligned_cols=51  Identities=24%  Similarity=0.400  Sum_probs=42.6

Q ss_pred             cCCCCcccccCccccCCCceecC-CCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939            8 IAVPNLFRCPISLDVMKSPVSLC-TGVTYDRSSIQHWLESGHDTCPATMQILS   59 (398)
Q Consensus         8 ~~~~~~~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~~~~~CP~~~~~l~   59 (398)
                      ...|+.=.||+|++--.+|-++. +|..||..||-.+..+ +..||+|+.+..
T Consensus       295 ~l~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~-~~~CPVT~~p~~  346 (357)
T KOG0826|consen  295 LLPPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVN-YGHCPVTGYPAS  346 (357)
T ss_pred             cCCCccccChhHHhccCCCceEEecceEEeHHHHHHHHHh-cCCCCccCCcch
Confidence            34455568999999999998887 7999999999999984 778999987643

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.51  E-value=0.002  Score=58.15  Aligned_cols=47  Identities=15%  Similarity=0.374  Sum_probs=37.2

Q ss_pred             ccccCccccCC--C-ceecCCCcccchhHHHHHHhcCCCCCCcccccCCC
Q 015939           14 FRCPISLDVMK--S-PVSLCTGVTYDRSSIQHWLESGHDTCPATMQILST   60 (398)
Q Consensus        14 ~~Cpi~~~~~~--d-Pv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~   60 (398)
                      .-|-||..-|.  | =+++||.|.|-+.||++|+..-...||+|+.++.+
T Consensus       324 veCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         324 VECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             ceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            36999987663  2 35789999999999999997545679999987654

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=96.50  E-value=0.22  Score=47.41  Aligned_cols=191  Identities=16%  Similarity=0.152  Sum_probs=118.6

Q ss_pred             CcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC
Q 015939          130 GFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD  209 (398)
Q Consensus       130 g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~  209 (398)
                      -.++.+..++.+ .+  ..+...+...+..+               ....+++.+..+|...++.+|..|+.+|..+-  
T Consensus        43 ~~~~~~~~~l~~-~~--~~vr~~aa~~l~~~---------------~~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~--  102 (335)
T COG1413          43 EAADELLKLLED-ED--LLVRLSAAVALGEL---------------GSEEAVPLLRELLSDEDPRVRDAAADALGELG--  102 (335)
T ss_pred             hhHHHHHHHHcC-CC--HHHHHHHHHHHhhh---------------chHHHHHHHHHHhcCCCHHHHHHHHHHHHccC--
Confidence            467888888887 33  34446666664332               23356899999999999999998888554432  


Q ss_pred             chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHH
Q 015939          210 NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKML  289 (398)
Q Consensus       210 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L  289 (398)
                              . ...++.|+.+|++..+..++..+..+|..+-..          .++..++.++.+  .....   +...+
T Consensus       103 --------~-~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----------~a~~~l~~~l~~--~~~~~---a~~~~  158 (335)
T COG1413         103 --------D-PEAVPPLVELLENDENEGVRAAAARALGKLGDE----------RALDPLLEALQD--EDSGS---AAAAL  158 (335)
T ss_pred             --------C-hhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----------hhhHHHHHHhcc--chhhh---hhhhc
Confidence                    2 567899999999533888999999999886432          347888888854  22111   11111


Q ss_pred             HHHhCCHHHHHHH------hhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhc
Q 015939          290 SIVATCSEGRLAL------SEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSE  363 (398)
Q Consensus       290 ~~La~~~~~~~~i------~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~  363 (398)
                      .  ......|...      ..+.-.++.+...+......++..|+..|..+...+           ....+.+...++..
T Consensus       159 ~--~~~~~~r~~a~~~l~~~~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-----------~~~~~~l~~~~~~~  225 (335)
T COG1413         159 D--AALLDVRAAAAEALGELGDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN-----------VEAADLLVKALSDE  225 (335)
T ss_pred             c--chHHHHHHHHHHHHHHcCChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-----------hhHHHHHHHHhcCC
Confidence            0  0000111111      123456788888888888889999999988877631           22333344444333


Q ss_pred             CcHHHHHHHHHHHHH
Q 015939          364 NEGIVRKMCGDLVKV  378 (398)
Q Consensus       364 ~~~~~k~~A~~lL~~  378 (398)
                       +..+|..+...|..
T Consensus       226 -~~~vr~~~~~~l~~  239 (335)
T COG1413         226 -SLEVRKAALLALGE  239 (335)
T ss_pred             -CHHHHHHHHHHhcc
Confidence             55666655554443

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.50  E-value=0.15  Score=52.27  Aligned_cols=263  Identities=11%  Similarity=0.110  Sum_probs=166.7

Q ss_pred             HHcCCCCchhHHHHHHHHHHHh---h---hhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchH
Q 015939           94 IKSENESENSCVDYLVKVAKFA---T---GCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVK  167 (398)
Q Consensus        94 l~~~~~~~~~~~~al~~L~~l~---~---~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~  167 (398)
                      +.+...+...+..|+++|.+-.   +   .++..|..|.+.      .+....+   ++.+++..|+.+|..+..--..+
T Consensus       181 mrk~e~s~~vRLaa~~aL~nsLef~~~nF~~E~ern~iMqv------vcEatq~---~d~~i~~aa~~ClvkIm~LyY~~  251 (859)
T KOG1241|consen  181 MRKEETSAAVRLAALNALYNSLEFTKANFNNEMERNYIMQV------VCEATQS---PDEEIQVAAFQCLVKIMSLYYEF  251 (859)
T ss_pred             ccccCCchhHHHHHHHHHHHHHHHHHHhhccHhhhceeeee------eeecccC---CcHHHHHHHHHHHHHHHHHHHHH
Confidence            3333333347888888887532   2   134456555543      2333333   56678899999998876532221


Q ss_pred             HHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCc-h----hHHHh-------------hchhhHHHHHHHH
Q 015939          168 EKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDN-E----SKRRV-------------LETENLLSALFDY  229 (398)
Q Consensus       168 ~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~-~----~~~~i-------------~~~~g~i~~Lv~l  229 (398)
                        ...+ + ....+..-+.-+++.++++...+...=++++..+ +    .....             ....+++|.|+.+
T Consensus       252 --m~~y-M-~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~  327 (859)
T KOG1241|consen  252 --MEPY-M-EQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLEL  327 (859)
T ss_pred             --HHHH-H-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHH
Confidence              1122 1 3345666677788899999999888888777653 1    11111             0113678888888


Q ss_pred             hccc------cCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcc--cCcchhhHHHHHHHHHHHhCCHH--HH
Q 015939          230 LKLA------EDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSD--SRTQILTVEKSIKMLSIVATCSE--GR  299 (398)
Q Consensus       230 L~~~------~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~--~~~~~~~~~~al~~L~~La~~~~--~~  299 (398)
                      |...      ++-..-++|..+|.-++..       +.-..|+.++.++..  .+++-+-++.|..++..+-..++  ..
T Consensus       328 L~kqde~~d~DdWnp~kAAg~CL~l~A~~-------~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~L  400 (859)
T KOG1241|consen  328 LTKQDEDDDDDDWNPAKAAGVCLMLFAQC-------VGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKL  400 (859)
T ss_pred             HHhCCCCcccccCcHHHHHHHHHHHHHHH-------hcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhh
Confidence            8652      1223455555555554322       122244444444421  34677888888888888776443  34


Q ss_pred             HHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHH
Q 015939          300 LALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVL  379 (398)
Q Consensus       300 ~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l  379 (398)
                      ..++  .+++|.++.++.+.+--+++.+.+.|..++.+-+ +..-....-.+.++.++.=|..  .+++-.++++.+-.|
T Consensus       401 t~iV--~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~-e~~~n~~~l~~~l~~l~~gL~D--ePrva~N~CWAf~~L  475 (859)
T KOG1241|consen  401 TPIV--IQALPSIINLMSDPSLWVKDTAAWTLGRIADFLP-EAIINQELLQSKLSALLEGLND--EPRVASNVCWAFISL  475 (859)
T ss_pred             hHHH--hhhhHHHHHHhcCchhhhcchHHHHHHHHHhhch-hhcccHhhhhHHHHHHHHHhhh--CchHHHHHHHHHHHH
Confidence            4555  4899999999998888999999999999997653 2334445556777777777764  489999999999999


Q ss_pred             hc
Q 015939          380 GK  381 (398)
Q Consensus       380 ~~  381 (398)
                      .+
T Consensus       476 ae  477 (859)
T KOG1241|consen  476 AE  477 (859)
T ss_pred             HH
Confidence            97

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.50  E-value=0.0017  Score=61.09  Aligned_cols=44  Identities=20%  Similarity=0.474  Sum_probs=38.4

Q ss_pred             cccccCccccCCC---ceecCCCcccchhHHHHHHhcCC--CCCCcccc
Q 015939           13 LFRCPISLDVMKS---PVSLCTGVTYDRSSIQHWLESGH--DTCPATMQ   56 (398)
Q Consensus        13 ~~~Cpi~~~~~~d---Pv~~~~g~~~~r~~i~~~~~~~~--~~CP~~~~   56 (398)
                      -|.|||.++--+|   |+.+.|||..++.+|.+-...|.  ..||-|..
T Consensus       334 vF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~  382 (394)
T KOG2817|consen  334 VFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV  382 (394)
T ss_pred             eeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence            3699999999887   99999999999999999998776  56888854

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.48  E-value=0.00067  Score=60.08  Aligned_cols=55  Identities=20%  Similarity=0.377  Sum_probs=44.4

Q ss_pred             CcccccCccccCCCce----------ecCCCcccchhHHHHHHhcC-CCCCCcccccCCCCCCccc
Q 015939           12 NLFRCPISLDVMKSPV----------SLCTGVTYDRSSIQHWLESG-HDTCPATMQILSTKEFVPN   66 (398)
Q Consensus        12 ~~~~Cpi~~~~~~dPv----------~~~~g~~~~r~~i~~~~~~~-~~~CP~~~~~l~~~~l~~n   66 (398)
                      ++=.|-+|++-+.+-|          .++|+|.|---||..|.--| ..+||-|++..+.+.+..|
T Consensus       223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~rmfsn  288 (328)
T KOG1734|consen  223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLKRMFSN  288 (328)
T ss_pred             CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHhhhccC
Confidence            4457999998777666          89999999999999998655 4689999998776665555

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=96.44  E-value=0.7  Score=44.01  Aligned_cols=184  Identities=15%  Similarity=0.198  Sum_probs=115.6

Q ss_pred             HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc
Q 015939           86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG  165 (398)
Q Consensus        86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~  165 (398)
                      .+..+++.+.+.+..  .+..|...+..+.           .. -+++.|..+|.+ .  +..++..|+.+|..+     
T Consensus        44 ~~~~~~~~l~~~~~~--vr~~aa~~l~~~~-----------~~-~av~~l~~~l~d-~--~~~vr~~a~~aLg~~-----  101 (335)
T COG1413          44 AADELLKLLEDEDLL--VRLSAAVALGELG-----------SE-EAVPLLRELLSD-E--DPRVRDAAADALGEL-----  101 (335)
T ss_pred             hHHHHHHHHcCCCHH--HHHHHHHHHhhhc-----------hH-HHHHHHHHHhcC-C--CHHHHHHHHHHHHcc-----
Confidence            455555666555322  4444444422222           12 467778888877 3  345668888866543     


Q ss_pred             hHHHhhHhhhccCCChHHHHHHHhc-CChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCH--------
Q 015939          166 VKEKLNRLILNTYNCLPLFLEILRE-GNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQ--------  236 (398)
Q Consensus       166 ~~~~~~~~il~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~--------  236 (398)
                                .....++.|+.+|.. .+..+|..++.+|..+-..           ..+.+|+..+.+. ..        
T Consensus       102 ----------~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~-----------~a~~~l~~~l~~~-~~~~a~~~~~  159 (335)
T COG1413         102 ----------GDPEAVPPLVELLENDENEGVRAAAARALGKLGDE-----------RALDPLLEALQDE-DSGSAAAALD  159 (335)
T ss_pred             ----------CChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch-----------hhhHHHHHHhccc-hhhhhhhhcc
Confidence                      234568899999994 7999999999999877543           3367778888776 32        


Q ss_pred             ----HHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHH
Q 015939          237 ----ALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRV  312 (398)
Q Consensus       237 ----~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~L  312 (398)
                          ..+..+..+|..          +-+.-.++.+.+.+.+  .+..++..|...|..+....         ...++.+
T Consensus       160 ~~~~~~r~~a~~~l~~----------~~~~~~~~~l~~~l~~--~~~~vr~~Aa~aL~~~~~~~---------~~~~~~l  218 (335)
T COG1413         160 AALLDVRAAAAEALGE----------LGDPEAIPLLIELLED--EDADVRRAAASALGQLGSEN---------VEAADLL  218 (335)
T ss_pred             chHHHHHHHHHHHHHH----------cCChhhhHHHHHHHhC--chHHHHHHHHHHHHHhhcch---------hhHHHHH
Confidence                123333333332          2234478889999954  56688889999998888754         1344556


Q ss_pred             HHHHhccChhHHHHHHHHHHHh
Q 015939          313 VERVMKVGKTAREDAVVVIWSM  334 (398)
Q Consensus       313 v~~l~~~~~~~~~~a~~~L~~l  334 (398)
                      ...+...+..++..++..|..+
T Consensus       219 ~~~~~~~~~~vr~~~~~~l~~~  240 (335)
T COG1413         219 VKALSDESLEVRKAALLALGEI  240 (335)
T ss_pred             HHHhcCCCHHHHHHHHHHhccc
Confidence            6666666666666666655443

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.43  E-value=0.76  Score=46.94  Aligned_cols=253  Identities=12%  Similarity=0.112  Sum_probs=125.3

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChH
Q 015939          103 SCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLP  182 (398)
Q Consensus       103 ~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~  182 (398)
                      ...-|++.+.++...  ++++.+..  + |   -.+|-+ ++...-+...|+-+|..|....++.       +...++..
T Consensus       127 fv~LAL~~I~niG~r--e~~ea~~~--D-I---~KlLvS-~~~~~~vkqkaALclL~L~r~spDl-------~~~~~W~~  190 (938)
T KOG1077|consen  127 FVCLALHCIANIGSR--EMAEAFAD--D-I---PKLLVS-GSSMDYVKQKAALCLLRLFRKSPDL-------VNPGEWAQ  190 (938)
T ss_pred             HHHHHHHHHHhhccH--hHHHHhhh--h-h---HHHHhC-CcchHHHHHHHHHHHHHHHhcCccc-------cChhhHHH
Confidence            445566666665432  34444432  1 2   356655 4333344456666666666655541       33447888


Q ss_pred             HHHHHHhcCChhhHHHHHHHHHHhhcC--chhHHHhhchhh-------------------------HHHHHHHHhccc--
Q 015939          183 LFLEILREGNLDSKIGSIKILDSISLD--NESKRRVLETEN-------------------------LLSALFDYLKLA--  233 (398)
Q Consensus       183 ~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g-------------------------~i~~Lv~lL~~~--  233 (398)
                      .++.+|+..+..+...+...+..|+..  ++++-.+...-+                         ..-.++++|+..  
T Consensus       191 riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~  270 (938)
T KOG1077|consen  191 RIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPT  270 (938)
T ss_pred             HHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCC
Confidence            888888877776766777777777655  233322211001                         112234444321  


Q ss_pred             -cCHHHHHHHHHHHH---HhcCCcc-h---HHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHH-HHHHHh-
Q 015939          234 -EDQALNDAILSILI---TLSVYRS-V---KAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSE-GRLALS-  303 (398)
Q Consensus       234 -~~~~~~~~a~~aL~---~Ls~~~~-~---~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~-~~~~i~-  303 (398)
                       +|+..+.....+|-   |...... +   ....+..-++--.+.+...-++++++..+|+..|..+-.+.| +.+.+. 
T Consensus       271 ~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~fls~rE~NiRYLaL  350 (938)
T KOG1077|consen  271 PEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELLSRAVNQLGQFLSHRETNIRYLAL  350 (938)
T ss_pred             CCCchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHhhcccccchhhhH
Confidence             23334433333333   2222111 1   111111111111233333334677777788877777654332 222211 


Q ss_pred             -------hccC-------cHHHHHHHHh-ccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHH
Q 015939          304 -------EEAS-------CAGRVVERVM-KVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIV  368 (398)
Q Consensus       304 -------~~~g-------~v~~Lv~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~  368 (398)
                             ...-       -...++..|+ ..+..+++.|+..|..+|.    .++...+++     -|++.|.+- +..+
T Consensus       351 Esm~~L~ss~~s~davK~h~d~Ii~sLkterDvSirrravDLLY~mcD----~~Nak~IV~-----elLqYL~tA-d~si  420 (938)
T KOG1077|consen  351 ESMCKLASSEFSIDAVKKHQDTIINSLKTERDVSIRRRAVDLLYAMCD----VSNAKQIVA-----ELLQYLETA-DYSI  420 (938)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHhc----hhhHHHHHH-----HHHHHHhhc-chHH
Confidence                   0101       1334455555 3677778888888888884    566666543     466666654 5666


Q ss_pred             HHHHHHHHHHHhc
Q 015939          369 RKMCGDLVKVLGK  381 (398)
Q Consensus       369 k~~A~~lL~~l~~  381 (398)
                      |+--.-=...|++
T Consensus       421 reeivlKvAILaE  433 (938)
T KOG1077|consen  421 REEIVLKVAILAE  433 (938)
T ss_pred             HHHHHHHHHHHHH
Confidence            6654443444444

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=96.42  E-value=0.0063  Score=41.27  Aligned_cols=55  Identities=15%  Similarity=-0.045  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHH
Q 015939          236 QALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIV  292 (398)
Q Consensus       236 ~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~L  292 (398)
                      +.++..|+++|.+++........-.-..+++.|+.+|.+  +++.|+..|+.+|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d--~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQD--DDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTS--SSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcC--CCHHHHHHHHHHHhcC
Confidence            468899999999998766544444555699999999954  6679999999999875

...

>KOG3113 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.38  E-value=0.0025  Score=56.03  Aligned_cols=52  Identities=13%  Similarity=0.317  Sum_probs=43.4

Q ss_pred             CCcccccCccccCCCce----ecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcc
Q 015939           11 PNLFRCPISLDVMKSPV----SLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVP   65 (398)
Q Consensus        11 ~~~~~Cpi~~~~~~dPv----~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~   65 (398)
                      ...|+|||++-.|.+-.    +.+|||.|.-.++.+.-   ..+|++|+++++..++++
T Consensus       109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKeik---as~C~~C~a~y~~~dvIv  164 (293)
T KOG3113|consen  109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEIK---ASVCHVCGAAYQEDDVIV  164 (293)
T ss_pred             cceeecccccceecceEEEEEEeccceeccHHHHHHhh---hccccccCCcccccCeEe
Confidence            35699999999999864    45799999999988874   558999999999888643

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.33  E-value=0.049  Score=49.37  Aligned_cols=99  Identities=18%  Similarity=0.211  Sum_probs=81.6

Q ss_pred             hHHHHHHHHHHhhc-CchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhc-CCcchHHHHHHcCChHHHHHHh
Q 015939          195 SKIGSIKILDSISL-DNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLS-VYRSVKAQLVELGMVQILTRIL  272 (398)
Q Consensus       195 ~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls-~~~~~~~~~v~~g~v~~Lv~lL  272 (398)
                      ....|..+|..++. ++..+..+.. ...+..|+++|....++.++.+++.+|..+. .++.|.+.+-+.||+..++.++
T Consensus       107 li~~aL~vLQGl~LLHp~Sr~lF~r-~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  107 LIALALRVLQGLCLLHPPSRKLFHR-EQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHhh-hhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence            35567788886664 5888888887 8899999999965447889999999988775 5667999999999999999999


Q ss_pred             cccCcchhhHHHHHHHHHHHhC
Q 015939          273 SDSRTQILTVEKSIKMLSIVAT  294 (398)
Q Consensus       273 ~~~~~~~~~~~~al~~L~~La~  294 (398)
                      ++.+.+.++..+++..|.-...
T Consensus       186 k~~~~~~~~r~K~~EFL~fyl~  207 (257)
T PF08045_consen  186 KSKSTDRELRLKCIEFLYFYLM  207 (257)
T ss_pred             ccccccHHHhHHHHHHHHHHHc
Confidence            8777788888888888877654

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=96.29  E-value=0.68  Score=46.50  Aligned_cols=184  Identities=12%  Similarity=0.121  Sum_probs=115.8

Q ss_pred             cCCChHHHHHHHhc---CChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCC
Q 015939          177 TYNCLPLFLEILRE---GNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVY  252 (398)
Q Consensus       177 ~~g~i~~Lv~lL~~---~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~  252 (398)
                      +++.++.+-.+|.+   ....+|..|..+...+... +.....     -.++.++.-+... .-..+.+++..|..+...
T Consensus       211 EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK-----~llpsll~~l~~~-kWrtK~aslellg~m~~~  284 (569)
T KOG1242|consen  211 EPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVK-----LLLPSLLGSLLEA-KWRTKMASLELLGAMADC  284 (569)
T ss_pred             CchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhh-----HhhhhhHHHHHHH-hhhhHHHHHHHHHHHHHh
Confidence            56667777777653   3678888888887766544 322222     2334444444333 456788999999988887


Q ss_pred             cchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHH
Q 015939          253 RSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIW  332 (398)
Q Consensus       253 ~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~  332 (398)
                      .+......-..+||.+.+.|  .+..+++++.+..+|..++..-++-. |.   -.+|.|+..+...+..+ ..++..|.
T Consensus       285 ap~qLs~~lp~iiP~lsevl--~DT~~evr~a~~~~l~~~~svidN~d-I~---~~ip~Lld~l~dp~~~~-~e~~~~L~  357 (569)
T KOG1242|consen  285 APKQLSLCLPDLIPVLSEVL--WDTKPEVRKAGIETLLKFGSVIDNPD-IQ---KIIPTLLDALADPSCYT-PECLDSLG  357 (569)
T ss_pred             chHHHHHHHhHhhHHHHHHH--ccCCHHHHHHHHHHHHHHHHhhccHH-HH---HHHHHHHHHhcCcccch-HHHHHhhc
Confidence            77777777788999999999  66899999999999999987555444 32   35677777776444333 33444443


Q ss_pred             HhhccCCChhHHHHHHhcCCHHHHHHHHhhc---CcHHHHHHHHHHHHHHhc
Q 015939          333 SMCCVYKDARVKEAVVNSNGLTKLLLVMQSE---NEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       333 ~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~---~~~~~k~~A~~lL~~l~~  381 (398)
                      .-+.       + .-+.+-.+..++-+|+.+   -+...+++++.+..++..
T Consensus       358 ~ttF-------V-~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~  401 (569)
T KOG1242|consen  358 ATTF-------V-AEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCK  401 (569)
T ss_pred             ceee-------e-eeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHH
Confidence            3221       1 112223333344333322   245677888888877765

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=96.27  E-value=0.027  Score=43.45  Aligned_cols=66  Identities=12%  Similarity=0.178  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHhcC-CcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHh
Q 015939          238 LNDAILSILITLSV-YRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALS  303 (398)
Q Consensus       238 ~~~~a~~aL~~Ls~-~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~  303 (398)
                      .+...+++|.||+- +..++..+.+.|+++.++..-.-.+.+|-+++-|+.++++|+. ++++++.|.
T Consensus         2 ~K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~   69 (102)
T PF09759_consen    2 FKRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIA   69 (102)
T ss_pred             cHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            35678899999985 5578888889999999999886445688999999999999988 666766664

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=96.20  E-value=0.55  Score=43.51  Aligned_cols=227  Identities=10%  Similarity=0.043  Sum_probs=151.9

Q ss_pred             HHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcC--ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHH
Q 015939          150 LESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREG--NLDSKIGSIKILDSISLDNESKRRVLETENLLSALF  227 (398)
Q Consensus       150 ~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv  227 (398)
                      +--|+++|.++....+.    |..+..+...-..+++++++.  ..+.|-+..-+++-|+.++....-+-.-...+.-|+
T Consensus       166 rlfav~cl~~l~~~~e~----R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli~dli  241 (432)
T COG5231         166 RLFAVSCLSNLEFDVEK----RKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLINDLI  241 (432)
T ss_pred             HHHHHHHHhhhhhhHHH----HHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            35677888888776553    454455666778889999865  688999999999999999877755555456788889


Q ss_pred             HHhccccCHHHHHHHHHHHHHhcCCc--chHHHHHHcCChHHHHHHhc-ccCcchhhHHHHHHHHHHHh-------CCH-
Q 015939          228 DYLKLAEDQALNDAILSILITLSVYR--SVKAQLVELGMVQILTRILS-DSRTQILTVEKSIKMLSIVA-------TCS-  296 (398)
Q Consensus       228 ~lL~~~~~~~~~~~a~~aL~~Ls~~~--~~~~~~v~~g~v~~Lv~lL~-~~~~~~~~~~~al~~L~~La-------~~~-  296 (398)
                      .+.+.....++.+-++..+.|++.-.  .....+.-.|-+..-+++|+ +.-+|++++..--.+=..|.       .-+ 
T Consensus       242 ~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD~  321 (432)
T COG5231         242 AIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFDN  321 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            99887756778899999999998632  45666666776666666664 22345555533222211111       111 


Q ss_pred             -----------------------HHHHHHhhc-cCcHHHHHHHHhccChh-HHHHHHHHHHHhhccCCChhHHHHHHhcC
Q 015939          297 -----------------------EGRLALSEE-ASCAGRVVERVMKVGKT-AREDAVVVIWSMCCVYKDARVKEAVVNSN  351 (398)
Q Consensus       297 -----------------------~~~~~i~~~-~g~v~~Lv~~l~~~~~~-~~~~a~~~L~~l~~~~~~~~~~~~~~~~g  351 (398)
                                             .+...+.++ --.+..|.++++...+. .-.-|+.=+..+...+  ++....+..-|
T Consensus       322 Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~--PE~~~vl~Kyg  399 (432)
T COG5231         322 YLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRAS--PEINAVLSKYG  399 (432)
T ss_pred             HHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhC--chHHHHHHHhh
Confidence                                   112222111 12466677777764444 2334555555555544  67888888999


Q ss_pred             CHHHHHHHHhhcCcHHHHHHHHHHHHHHhcCC
Q 015939          352 GLTKLLLVMQSENEGIVRKMCGDLVKVLGKAS  383 (398)
Q Consensus       352 ~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~~~  383 (398)
                      +=+.+..+|..+ ++++|-.|...++.+-.+.
T Consensus       400 ~k~~im~L~nh~-d~~VkfeAl~a~q~~i~~~  430 (432)
T COG5231         400 VKEIIMNLINHD-DDDVKFEALQALQTCISSE  430 (432)
T ss_pred             hHHHHHHHhcCC-CchhhHHHHHHHHHHHhhh
Confidence            999999999877 8999999999998876543

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.20  E-value=0.0022  Score=60.27  Aligned_cols=59  Identities=27%  Similarity=0.524  Sum_probs=46.0

Q ss_pred             ccccCccccCCCc-----eecCCCcccchhHHHHHHhcC-CCCCCcccccCCCCCCcccHHHHHH
Q 015939           14 FRCPISLDVMKSP-----VSLCTGVTYDRSSIQHWLESG-HDTCPATMQILSTKEFVPNLTLHRL   72 (398)
Q Consensus        14 ~~Cpi~~~~~~dP-----v~~~~g~~~~r~~i~~~~~~~-~~~CP~~~~~l~~~~l~~n~~l~~~   72 (398)
                      -+||||.+-..-|     |.+.|||-|-..||++|+.+- ...||.|.-.-...++.+-.+++..
T Consensus         5 ~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~q   69 (463)
T KOG1645|consen    5 TTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQ   69 (463)
T ss_pred             ccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHH
Confidence            4799999999887     467799999999999999532 2469999776666677777666544

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.18  E-value=0.034  Score=55.84  Aligned_cols=182  Identities=14%  Similarity=0.111  Sum_probs=116.2

Q ss_pred             HHHHHHHhhhccCCcHHHHHHHHHHHH---hhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhc
Q 015939          132 VEAVFGVLNRKRRSEIAVLESAVRVLN---LIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISL  208 (398)
Q Consensus       132 v~~L~~lL~~~~~~~~~~~~~al~~L~---~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~  208 (398)
                      ....+..+.+   ....++..|+.++.   |......+.+.+... + ...++..+.+.+...+..+|..|+.+|+.+-.
T Consensus       236 Y~~A~~~lsD---~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~k-l-~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~  310 (823)
T KOG2259|consen  236 YSRAVKHLSD---DYEDVRKAAVQLVSVWGNRCPAPLERESEEEK-L-KDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQ  310 (823)
T ss_pred             HHHHHHHhcc---hHHHHHHHHHHHHHHHHhcCCCcccchhhhhh-h-HHHHHHHHHHHHhcCceeeeehHHHHhchHHH
Confidence            3444555554   34456677766554   444222222222222 1 24568888899998899999999998886644


Q ss_pred             C-chhHHH--------------------------------------------------hhchhhHHHHHHHHhccccCHH
Q 015939          209 D-NESKRR--------------------------------------------------VLETENLLSALFDYLKLAEDQA  237 (398)
Q Consensus       209 ~-~~~~~~--------------------------------------------------i~~~~g~i~~Lv~lL~~~~~~~  237 (398)
                      . ++.-.+                                                  |.. +|+-.++|.=|.+. -.+
T Consensus       311 vSee~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~-sGACGA~VhGlEDE-f~E  388 (823)
T KOG2259|consen  311 VSEEIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIP-SGACGALVHGLEDE-FYE  388 (823)
T ss_pred             hHHHHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhcccccccccc-ccccceeeeechHH-HHH
Confidence            3 211111                                                  111 23334444444444 458


Q ss_pred             HHHHHHHHHHHhcCCcc-hHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHH
Q 015939          238 LNDAILSILITLSVYRS-VKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERV  316 (398)
Q Consensus       238 ~~~~a~~aL~~Ls~~~~-~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l  316 (398)
                      ++++|...++.|+.+.. ...     .+++.|++++  .++...++.+|+.+|..++.+-..++      .-++.+.+.|
T Consensus       389 VR~AAV~Sl~~La~ssP~FA~-----~aldfLvDMf--NDE~~~VRL~ai~aL~~Is~~l~i~e------eql~~il~~L  455 (823)
T KOG2259|consen  389 VRRAAVASLCSLATSSPGFAV-----RALDFLVDMF--NDEIEVVRLKAIFALTMISVHLAIRE------EQLRQILESL  455 (823)
T ss_pred             HHHHHHHHHHHHHcCCCCcHH-----HHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHheecH------HHHHHHHHHH
Confidence            99999999999986543 322     2678999999  45778899999999999998633333      3455677888


Q ss_pred             hccChhHHHHHHHHHHH
Q 015939          317 MKVGKTAREDAVVVIWS  333 (398)
Q Consensus       317 ~~~~~~~~~~a~~~L~~  333 (398)
                      .+.+..+++..-..|.+
T Consensus       456 ~D~s~dvRe~l~elL~~  472 (823)
T KOG2259|consen  456 EDRSVDVREALRELLKN  472 (823)
T ss_pred             HhcCHHHHHHHHHHHHh
Confidence            88899999887777644

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=96.09  E-value=0.39  Score=49.35  Aligned_cols=195  Identities=11%  Similarity=0.058  Sum_probs=119.7

Q ss_pred             CcHHHHHHHhhhcc---CCcHH-HHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHH
Q 015939          130 GFVEAVFGVLNRKR---RSEIA-VLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDS  205 (398)
Q Consensus       130 g~v~~L~~lL~~~~---~~~~~-~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~  205 (398)
                      +.+|.|+++|..+.   +.+.. ....|-.+|..++....+      . ++. -++|.+-+-+++.+..-|+.|+.++..
T Consensus       319 ~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D------~-Iv~-~Vl~Fiee~i~~pdwr~reaavmAFGS  390 (859)
T KOG1241|consen  319 DVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGD------D-IVP-HVLPFIEENIQNPDWRNREAAVMAFGS  390 (859)
T ss_pred             HhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcc------c-chh-hhHHHHHHhcCCcchhhhhHHHHHHHh
Confidence            67888999996631   11111 113344455544432222      1 111 344444445567788889999999999


Q ss_pred             hhcCch-hHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCc-chHHH-HHHcCChHHHHHHhcccCcchhhH
Q 015939          206 ISLDNE-SKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYR-SVKAQ-LVELGMVQILTRILSDSRTQILTV  282 (398)
Q Consensus       206 L~~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~-~v~~g~v~~Lv~lL~~~~~~~~~~  282 (398)
                      +...++ .+..=.. .+++|.++.++.++ +.-++..++|+|+.++..- +.+.. ....+.++.++.=|.   +.|.+.
T Consensus       391 Il~gp~~~~Lt~iV-~qalp~ii~lm~D~-sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~---DePrva  465 (859)
T KOG1241|consen  391 ILEGPEPDKLTPIV-IQALPSIINLMSDP-SLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN---DEPRVA  465 (859)
T ss_pred             hhcCCchhhhhHHH-hhhhHHHHHHhcCc-hhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh---hCchHH
Confidence            988843 3332222 68999999999977 7778899999999997543 22222 224556677777664   489999


Q ss_pred             HHHHHHHHHHhC--CHHHHHH----HhhccCcHHHHHHHH----hc---cChhHHHHHHHHHHHhhccCC
Q 015939          283 EKSIKMLSIVAT--CSEGRLA----LSEEASCAGRVVERV----MK---VGKTAREDAVVVIWSMCCVYK  339 (398)
Q Consensus       283 ~~al~~L~~La~--~~~~~~~----i~~~~g~v~~Lv~~l----~~---~~~~~~~~a~~~L~~l~~~~~  339 (398)
                      .+++|++.+|+.  .+..+..    .. + -..+.+++-|    .+   .....+..|..+|..|-.++.
T Consensus       466 ~N~CWAf~~Laea~~eA~~s~~qt~~~-t-~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st  533 (859)
T KOG1241|consen  466 SNVCWAFISLAEAAYEAAVSNGQTDPA-T-PFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNST  533 (859)
T ss_pred             HHHHHHHHHHHHHHHHhccCCCCCCcc-c-hhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCc
Confidence            999999999994  1111111    22 1 1233333333    22   234567788888888887764

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=96.02  E-value=0.15  Score=50.39  Aligned_cols=155  Identities=12%  Similarity=0.109  Sum_probs=115.9

Q ss_pred             HHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCc--chhhHHHHHHHHHHHhCCHHHH
Q 015939          222 LLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRT--QILTVEKSIKMLSIVATCSEGR  299 (398)
Q Consensus       222 ~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~--~~~~~~~al~~L~~La~~~~~~  299 (398)
                      ....+.+++.++ +...+..++.-|..++.+......++...++..|.+++.+...  ...+...++.++..|-.+.-..
T Consensus        84 ~a~~i~e~l~~~-~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvs  162 (713)
T KOG2999|consen   84 YAKRIMEILTEG-NNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVS  162 (713)
T ss_pred             HHHHHHHHHhCC-CcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceee
Confidence            345677888888 7778888999999999999999999999999999999965332  3456666666666665544333


Q ss_pred             HHHhhccCcHHHHHHHHh--ccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015939          300 LALSEEASCAGRVVERVM--KVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVK  377 (398)
Q Consensus       300 ~~i~~~~g~v~~Lv~~l~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~  377 (398)
                      ...+. ..+|...+.++.  ..+..+-..|+..|.++..++  ......+.+.--+..|+..++.+ +.+++.+|-.++.
T Consensus       163 W~~~~-~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s--~~~~~~v~eev~i~~li~hlq~~-n~~i~~~aial~n  238 (713)
T KOG2999|consen  163 WESVS-NDFVVSMASYVNAKREDANTLLAALQMLESLVLGS--DTLRQLVAEEVPIETLIRHLQVS-NQRIQTCAIALLN  238 (713)
T ss_pred             eeecc-cHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCC--hHHHHHHHhcCcHHHHHHHHHhc-chHHHHHHHHHHH
Confidence            33332 245555555553  356677789999999998864  56778888888999999999988 7888888988888


Q ss_pred             HHhc
Q 015939          378 VLGK  381 (398)
Q Consensus       378 ~l~~  381 (398)
                      .+-.
T Consensus       239 al~~  242 (713)
T KOG2999|consen  239 ALFR  242 (713)
T ss_pred             HHHh
Confidence            7766

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=96.01  E-value=0.25  Score=51.65  Aligned_cols=192  Identities=6%  Similarity=0.000  Sum_probs=137.1

Q ss_pred             HHHHHHHhcC-ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHH
Q 015939          182 PLFLEILREG-NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLV  260 (398)
Q Consensus       182 ~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v  260 (398)
                      ...+..+.-+ .+.++..|++++...+...   ...-.-.++++.|..+.... +.++....+.+|...+..+.......
T Consensus       493 ~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~---vl~~~~p~ild~L~qlas~~-s~evl~llmE~Ls~vv~~dpef~as~  568 (1005)
T KOG2274|consen  493 NATVNALTMDVPPPVKISAVRAFCGYCKVK---VLLSLQPMILDGLLQLASKS-SDEVLVLLMEALSSVVKLDPEFAASM  568 (1005)
T ss_pred             HHHHHhhccCCCCchhHHHHHHHHhccCce---eccccchHHHHHHHHHcccc-cHHHHHHHHHHHHHHhccChhhhhhh
Confidence            3344444433 5566777777766555221   11111267888888888877 77889999999999998887777777


Q ss_pred             HcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccC----hhHHHHHHHHHHHhhc
Q 015939          261 ELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVG----KTAREDAVVVIWSMCC  336 (398)
Q Consensus       261 ~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~----~~~~~~a~~~L~~l~~  336 (398)
                      +.-..|.++.+....++||-+...+-.++..|+....+...+.  +-.+|.+|..|....    .....-|+.+|..+-+
T Consensus       569 ~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~--e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr  646 (1005)
T KOG2274|consen  569 ESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQ--ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLR  646 (1005)
T ss_pred             hcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchH--HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHh
Confidence            8888898888886567899999999999999998555555555  368999999998644    6667788888887777


Q ss_pred             cCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          337 VYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       337 ~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      ..+. ..-..++.. ++|.+.+..-..++...-+.+..+|+.+=.
T Consensus       647 ~tp~-pL~~~l~~~-~FpaVak~tlHsdD~~tlQ~~~EcLra~Is  689 (1005)
T KOG2274|consen  647 NTPS-PLPNLLICY-AFPAVAKITLHSDDHETLQNATECLRALIS  689 (1005)
T ss_pred             cCCC-CccHHHHHH-HhHHhHhheeecCChHHHHhHHHHHHHHHh
Confidence            6653 344444433 667676666555577888889888887755

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=96.00  E-value=0.028  Score=48.73  Aligned_cols=83  Identities=17%  Similarity=0.220  Sum_probs=68.7

Q ss_pred             chHHHHHHcCChHHHHHHhccc-------CcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHH
Q 015939          254 SVKAQLVELGMVQILTRILSDS-------RTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTARED  326 (398)
Q Consensus       254 ~~~~~~v~~g~v~~Lv~lL~~~-------~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~  326 (398)
                      +-...+++.||+..|+.+|...       ..+......++.+|+.|..+..|...+..+.+++..|+..|.+.+..++..
T Consensus        98 ~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~  177 (187)
T PF06371_consen   98 SWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKL  177 (187)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHH
T ss_pred             hHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHH
Confidence            3466788999999999998621       134467788999999999999999999989999999999999999999999


Q ss_pred             HHHHHHHhhc
Q 015939          327 AVVVIWSMCC  336 (398)
Q Consensus       327 a~~~L~~l~~  336 (398)
                      ++.+|..+|.
T Consensus       178 ~leiL~~lc~  187 (187)
T PF06371_consen  178 ALEILAALCL  187 (187)
T ss_dssp             HHHHHHHHHT
T ss_pred             HHHHHHHHHC
Confidence            9999998873

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=95.98  E-value=0.32  Score=48.16  Aligned_cols=157  Identities=20%  Similarity=0.200  Sum_probs=111.5

Q ss_pred             hHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhcccc---CHHHHHHHHHHHHHhcCCcchHH
Q 015939          181 LPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAE---DQALNDAILSILITLSVYRSVKA  257 (398)
Q Consensus       181 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~---~~~~~~~a~~aL~~Ls~~~~~~~  257 (398)
                      ...+.+++.+|+...+..|...|..++.+......+.. ..++..|..+..++.   +.+.....++++..+-...-.-.
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~-~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW  163 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIR-CSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW  163 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHh-cchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence            45567888899889998899999999999877777766 567899999998872   24566677777766632221212


Q ss_pred             HHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHH-HHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhc
Q 015939          258 QLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSE-GRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCC  336 (398)
Q Consensus       258 ~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~-~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~  336 (398)
                      ..+.-..|.....+..-...+..+...|+..|.++..+.. .++.+. .+--+..|+..+..++...+..|+..+-.+-.
T Consensus       164 ~~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~-eev~i~~li~hlq~~n~~i~~~aial~nal~~  242 (713)
T KOG2999|consen  164 ESVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVA-EEVPIETLIRHLQVSNQRIQTCAIALLNALFR  242 (713)
T ss_pred             eecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHH-hcCcHHHHHHHHHhcchHHHHHHHHHHHHHHh
Confidence            2222223344444443223467788899999999987555 555565 45789999999999999999999988877766


Q ss_pred             cCC
Q 015939          337 VYK  339 (398)
Q Consensus       337 ~~~  339 (398)
                      ..+
T Consensus       243 ~a~  245 (713)
T KOG2999|consen  243 KAP  245 (713)
T ss_pred             hCC
Confidence            544

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=95.92  E-value=0.0047  Score=41.14  Aligned_cols=47  Identities=13%  Similarity=0.002  Sum_probs=36.5

Q ss_pred             cccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCC
Q 015939           13 LFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKE   62 (398)
Q Consensus        13 ~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~   62 (398)
                      +..|=.|...=...++++|||..|+.|..-+   ....||.|+.+++..+
T Consensus         7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~---rYngCPfC~~~~~~~~   53 (55)
T PF14447_consen    7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPGE---RYNGCPFCGTPFEFDD   53 (55)
T ss_pred             ceeEEEccccccccccccccceeeccccChh---hccCCCCCCCcccCCC
Confidence            4457778888888999999999999884333   3457999999987654

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.90  E-value=0.62  Score=48.19  Aligned_cols=148  Identities=16%  Similarity=0.129  Sum_probs=88.0

Q ss_pred             HHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC--CHHHHHHH
Q 015939          225 ALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT--CSEGRLAL  302 (398)
Q Consensus       225 ~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~--~~~~~~~i  302 (398)
                      .+++.|+++ |...++.|+..++.|.-. .|...|+     .-|++.|.  ..+++.+..+..-+..++.  .|+.+..|
T Consensus       354 tIleCL~Dp-D~SIkrralELs~~lvn~-~Nv~~mv-----~eLl~fL~--~~d~~~k~~~as~I~~laEkfaP~k~W~i  424 (866)
T KOG1062|consen  354 TILECLKDP-DVSIKRRALELSYALVNE-SNVRVMV-----KELLEFLE--SSDEDFKADIASKIAELAEKFAPDKRWHI  424 (866)
T ss_pred             HHHHHhcCC-cHHHHHHHHHHHHHHhcc-ccHHHHH-----HHHHHHHH--hccHHHHHHHHHHHHHHHHhcCCcchhHH
Confidence            467888888 888999999998888644 4444444     45778884  3477788777777777765  44444432


Q ss_pred             ------hhcc------CcHHHHHHHHhccChhHHHHHHHHHHHhhccCC----C-hh---H-HH----------------
Q 015939          303 ------SEEA------SCAGRVVERVMKVGKTAREDAVVVIWSMCCVYK----D-AR---V-KE----------------  345 (398)
Q Consensus       303 ------~~~~------g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~----~-~~---~-~~----------------  345 (398)
                            ...+      ..+..++.++..+.++..++++.-|+.-...+.    + +.   + ..                
T Consensus       425 dtml~Vl~~aG~~V~~dv~~nll~LIa~~~~e~~~y~~~rLy~a~~~~~~~~is~e~l~qVa~W~IGEYGdlll~~~~~~  504 (866)
T KOG1062|consen  425 DTMLKVLKTAGDFVNDDVVNNLLRLIANAFQELHEYAVLRLYLALSEDTLLDISQEPLLQVASWCIGEYGDLLLDGANEE  504 (866)
T ss_pred             HHHHHHHHhcccccchhhHHHHHHHHhcCCcchhhHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHhhhhhHHhhcCcccc
Confidence                  2222      457777777777656666666555554322110    0 00   0 00                


Q ss_pred             ---HHHhcCCHHHHHHHHhhc-CcHHHHHHHHHHHHHHhc
Q 015939          346 ---AVVNSNGLTKLLLVMQSE-NEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       346 ---~~~~~g~~~~Ll~~l~~~-~~~~~k~~A~~lL~~l~~  381 (398)
                         .+-+..++.+|..++.+. .+..+|.-|..+|-.|+.
T Consensus       505 ~p~~vtesdivd~l~~v~~~~~s~~~tk~yal~Al~KLSs  544 (866)
T KOG1062|consen  505 EPIKVTESDIVDKLEKVLMSHSSDSTTKGYALTALLKLSS  544 (866)
T ss_pred             CCCcCCHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHh
Confidence               111244677777777543 345778888665554444

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.90  E-value=0.19  Score=42.31  Aligned_cols=147  Identities=16%  Similarity=0.121  Sum_probs=100.9

Q ss_pred             CChHHHHHHHhc--CChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhc-CCcch
Q 015939          179 NCLPLFLEILRE--GNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLS-VYRSV  255 (398)
Q Consensus       179 g~i~~Lv~lL~~--~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls-~~~~~  255 (398)
                      ..+..++..|..  .+.++|..+..++..+-  +..+....+  -+-+.+-.++..+ +.+....+..++..|= ...+.
T Consensus         3 ~~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~~~~--~~~~~i~~~~~~~-~~d~~i~~~~~l~~lfp~~~dv   77 (157)
T PF11701_consen    3 DELDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREEFKE--KISDFIESLLDEG-EMDSLIIAFSALTALFPGPPDV   77 (157)
T ss_dssp             CCCCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHHHHH--HHHHHHHHHHCCH-HCCHHHHHHHHHHHHCTTTHHH
T ss_pred             HHHHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHHHHH--HHHHHHHHHHccc-cchhHHHHHHHHHHHhCCCHHH
Confidence            345667777764  58899999999888774  334444322  2233334444444 4456777788888775 45566


Q ss_pred             HHHHH-HcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhc-cChh-HHHHHHHHHH
Q 015939          256 KAQLV-ELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMK-VGKT-AREDAVVVIW  332 (398)
Q Consensus       256 ~~~~v-~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~-~~~~-~~~~a~~~L~  332 (398)
                      ...+. ..|.++.++.++.+...+..+...++.+|..-|.+...|..|..  .+++.|-+.++. .++. .+..|+-+|.
T Consensus        78 ~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~~--~~~~~L~~~~~~~~~~~~ir~~A~v~L~  155 (157)
T PF11701_consen   78 GSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFISK--NYVSWLKELYKNSKDDSEIRVLAAVGLC  155 (157)
T ss_dssp             HHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCHH--HCHHHHHHHTTTCC-HH-CHHHHHHHHH
T ss_pred             HHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHHH--HHHHHHHHHHccccchHHHHHHHHHHHh
Confidence            67776 78999999999963356888888999999999998888888884  578888888854 4455 6777776664

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=95.86  E-value=1.3  Score=40.06  Aligned_cols=187  Identities=9%  Similarity=-0.001  Sum_probs=123.7

Q ss_pred             CChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHH-Hhc------cc----cCHHHHHHHHHHHHHhcCCcchHHH
Q 015939          191 GNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFD-YLK------LA----EDQALNDAILSILITLSVYRSVKAQ  258 (398)
Q Consensus       191 ~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~-lL~------~~----~~~~~~~~a~~aL~~Ls~~~~~~~~  258 (398)
                      .+++.|+.|..-|..--.. ++....+..+.|.+..|+. +.+      .+    ....-+.+|+..|-.++++++.|..
T Consensus         7 ~~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~   86 (262)
T PF04078_consen    7 CNPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMP   86 (262)
T ss_dssp             SSHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHH
T ss_pred             cCcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence            3677888777666644333 6777777777888777764 222      11    0113455777777788999999999


Q ss_pred             HHHcCChHHHHHHhcccCc---chhhHHHHHHHHHHHhC--CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHH
Q 015939          259 LVELGMVQILTRILSDSRT---QILTVEKSIKMLSIVAT--CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWS  333 (398)
Q Consensus       259 ~v~~g~v~~Lv~lL~~~~~---~~~~~~~al~~L~~La~--~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~  333 (398)
                      +.++...-.|..+|...+.   -+.++-.+++++..|.+  +++....+. ....+|.-++.|+.|+...+.-|.-++..
T Consensus        87 Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl-~tEiiplcLr~me~GselSKtvAtfIlqK  165 (262)
T PF04078_consen   87 FLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLL-QTEIIPLCLRIMEFGSELSKTVATFILQK  165 (262)
T ss_dssp             HHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHH-CTTHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHH-hhchHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            9999988888888853222   23466689999999998  445556666 56899999999999999999999999988


Q ss_pred             hhccCCChhHHHHHHh--------cCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          334 MCCVYKDARVKEAVVN--------SNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       334 l~~~~~~~~~~~~~~~--------~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      +-..   +.....+.+        .-++..++..|..+.+++.-+..-.+-..|++
T Consensus       166 IL~d---d~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsd  218 (262)
T PF04078_consen  166 ILLD---DVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSD  218 (262)
T ss_dssp             HHHS---HHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTT
T ss_pred             HHcc---hhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHcc
Confidence            7542   121121111        33556666666566677777776666666665

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=95.65  E-value=0.013  Score=38.80  Aligned_cols=41  Identities=20%  Similarity=0.417  Sum_probs=32.5

Q ss_pred             cccCccc--cCCCceecCCC-----cccchhHHHHHHhc-CCCCCCccc
Q 015939           15 RCPISLD--VMKSPVSLCTG-----VTYDRSSIQHWLES-GHDTCPATM   55 (398)
Q Consensus        15 ~Cpi~~~--~~~dPv~~~~g-----~~~~r~~i~~~~~~-~~~~CP~~~   55 (398)
                      .|-||.+  --.+|.+.||.     |.|=+.|+.+|+.. +..+||+|+
T Consensus         1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            3778875  56789999985     67889999999964 466899985

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=95.62  E-value=0.011  Score=39.17  Aligned_cols=45  Identities=22%  Similarity=0.338  Sum_probs=24.5

Q ss_pred             cccccCccccCCCceecC-CCcc--cchhHHHHHH-hcCCCCCCccccc
Q 015939           13 LFRCPISLDVMKSPVSLC-TGVT--YDRSSIQHWL-ESGHDTCPATMQI   57 (398)
Q Consensus        13 ~~~Cpi~~~~~~dPv~~~-~g~~--~~r~~i~~~~-~~~~~~CP~~~~~   57 (398)
                      .+.|||+.+.|+-||-.. |.|.  ||-...-+.. ..+.-.||.|+++
T Consensus         2 sL~CPls~~~i~~P~Rg~~C~H~~CFDl~~fl~~~~~~~~W~CPiC~~~   50 (50)
T PF02891_consen    2 SLRCPLSFQRIRIPVRGKNCKHLQCFDLESFLESNQRTPKWKCPICNKP   50 (50)
T ss_dssp             ESB-TTTSSB-SSEEEETT--SS--EEHHHHHHHHHHS---B-TTT---
T ss_pred             eeeCCCCCCEEEeCccCCcCcccceECHHHHHHHhhccCCeECcCCcCc
Confidence            468999999999999976 9887  6654433333 3334579999864

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=95.61  E-value=0.78  Score=44.83  Aligned_cols=177  Identities=11%  Similarity=0.094  Sum_probs=115.5

Q ss_pred             HHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcC-------ChhhHHHHHHHHHHhhcCchhH--HHhhchhh
Q 015939          151 ESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREG-------NLDSKIGSIKILDSISLDNESK--RRVLETEN  221 (398)
Q Consensus       151 ~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L~~L~~~~~~~--~~i~~~~g  221 (398)
                      ..|+-....++.+++....+|+. +-++-+.+.+-++|..+       +.-.+.-+..+|..++.+++..  ..+   -+
T Consensus        29 fAaLllVTK~vK~~Di~a~~kk~-vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~pElAsh~~~---v~  104 (698)
T KOG2611|consen   29 FAALLLVTKFVKNDDIVALNKKL-VFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVPELASHEEM---VS  104 (698)
T ss_pred             HHHHHHHHHHhcccchhhhhhhh-HHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCChhhccCHHH---HH
Confidence            55666666777777766666777 55776788888888644       2334566777888888887533  333   24


Q ss_pred             HHHHHHHHhccccCHH------HHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-
Q 015939          222 LLSALFDYLKLAEDQA------LNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-  294 (398)
Q Consensus       222 ~i~~Lv~lL~~~~~~~------~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-  294 (398)
                      .||.|..+++.+.+++      ....+-.+|+.++..+.....++..|+++.+.++-.. .+..--...++.++-.+.. 
T Consensus       105 ~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~-~~~~~d~alal~Vlll~~~~  183 (698)
T KOG2611|consen  105 RIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYEL-PDGSHDMALALKVLLLLVSK  183 (698)
T ss_pred             hhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhC-CCCchhHHHHHHHHHHHHHh
Confidence            6899999998764555      7889999999999999999999999999999977642 2222223344444444332 


Q ss_pred             ---CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhh
Q 015939          295 ---CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMC  335 (398)
Q Consensus       295 ---~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~  335 (398)
                         .++....+.+   .|..+..=+...+...+-..+.+|..+-
T Consensus       184 ~~cw~e~~~~fla---li~~va~df~~~~~a~KfElc~lL~~vl  224 (698)
T KOG2611|consen  184 LDCWSETIERFLA---LIAAVARDFAVLHNALKFELCHLLSAVL  224 (698)
T ss_pred             cccCcCCHHHHHH---HHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence               2233333331   2444444444456666777788887543

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=95.59  E-value=3.8  Score=43.56  Aligned_cols=241  Identities=17%  Similarity=0.177  Sum_probs=130.3

Q ss_pred             HHHHHHHHHcCC---CCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhc-cC----CcHHHHHHHHHHHH
Q 015939           87 VRVWIEKIKSEN---ESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRK-RR----SEIAVLESAVRVLN  158 (398)
Q Consensus        87 i~~l~~~l~~~~---~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~-~~----~~~~~~~~al~~L~  158 (398)
                      +..++..|.+-.   ...+.....++.|...++- +.||+.+.+. |+++.|+..|... ..    ....+.+..+.++.
T Consensus       119 L~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv-~~NR~~Ll~~-~al~~LL~~L~~~l~~~~~~~~~~i~E~LL~IiE  196 (802)
T PF13764_consen  119 LEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV-KVNRRALLEL-NALNRLLSVLNRALQANQNSSQAEIAEQLLEIIE  196 (802)
T ss_pred             HHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh-HHHHHHHHHc-CCHHHHHHHHHHHHhCccccccchHHHHHHHHHH
Confidence            445566654421   1112223344445555555 8999999999 9999999988632 11    12445577777666


Q ss_pred             hhhcccchH--HHhhHhhhc-------cCCChHHHHHHHhcC----ChhhHHHHHHHHHHhhcCchhH-HHhhchhhHHH
Q 015939          159 LIVNENGVK--EKLNRLILN-------TYNCLPLFLEILREG----NLDSKIGSIKILDSISLDNESK-RRVLETENLLS  224 (398)
Q Consensus       159 ~l~~~~~~~--~~~~~~il~-------~~g~i~~Lv~lL~~~----~~~~~~~a~~~L~~L~~~~~~~-~~i~~~~g~i~  224 (398)
                      .+.......  ...... ..       ...-+..|++.+.+.    +..+....+++|-.|+..+..+ ..+++   -+.
T Consensus       197 ~ll~ea~~~~~~~~~~~-~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~---~F~  272 (802)
T PF13764_consen  197 SLLSEANSSSSSESKSS-SSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE---HFK  272 (802)
T ss_pred             HHHHHHhhhhhhhcccc-ccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH---HHH
Confidence            655432211  000000 00       112366666666644    5777888889999999885443 33332   244


Q ss_pred             HHHHHhcc--ccCHHHHHHHHHHHHHhcC-------CcchHHHHHHcCChHHHHHHhcccCc------c--------hhh
Q 015939          225 ALFDYLKL--AEDQALNDAILSILITLSV-------YRSVKAQLVELGMVQILTRILSDSRT------Q--------ILT  281 (398)
Q Consensus       225 ~Lv~lL~~--~~~~~~~~~a~~aL~~Ls~-------~~~~~~~~v~~g~v~~Lv~lL~~~~~------~--------~~~  281 (398)
                      +.+++=+-  ...++. ..-+..+..++.       +..-|..+++.|.+...++.|....+      +        ...
T Consensus       273 p~l~f~~~D~~~~~~~-~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~ps  351 (802)
T PF13764_consen  273 PYLDFDKFDEEHSPDE-QFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRPS  351 (802)
T ss_pred             HhcChhhcccccCchH-HHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCCc
Confidence            44443221  111111 223445555532       22467778899999999988853211      1        234


Q ss_pred             HHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhcc--ChhHHHHHHHHHHHhhc
Q 015939          282 VEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKV--GKTAREDAVVVIWSMCC  336 (398)
Q Consensus       282 ~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~--~~~~~~~a~~~L~~l~~  336 (398)
                      ...++.+|.-|+.+....+.+.. .++++. +..|...  +..+-..|=.+|-.++.
T Consensus       352 Lp~iL~lL~GLa~gh~~tQ~~~~-~~~l~~-lH~LEqvss~~~IGslAEnlLeal~~  406 (802)
T PF13764_consen  352 LPYILRLLRGLARGHEPTQLLIA-EQLLPL-LHRLEQVSSEEHIGSLAENLLEALAE  406 (802)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHH-hhHHHH-HHHhhcCCCccchHHHHHHHHHHHhc
Confidence            45788999999886555555553 467744 4445442  23333344444444443

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=95.50  E-value=1.8  Score=40.85  Aligned_cols=194  Identities=19%  Similarity=0.166  Sum_probs=113.0

Q ss_pred             hHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhc-hhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCC---cchH
Q 015939          181 LPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLE-TENLLSALFDYLKLAEDQALNDAILSILITLSVY---RSVK  256 (398)
Q Consensus       181 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~---~~~~  256 (398)
                      +...++.|...+...|+.+...|..+....-....+.. ...+++.+.+.++.+ ..+.+..|++++.-|+..   .+..
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg-~~~E~~lA~~~l~Ll~ltlg~g~~~  123 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKG-KSEEQALAARALALLALTLGAGEDS  123 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHHhhhcCCCccH
Confidence            44555666666788999999998877655333334432 244788888889888 446677777777766543   3455


Q ss_pred             HHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHH---HhC-CHHHHHHHhhccCcHHHHHH--HHhc-c---------C
Q 015939          257 AQLVELGMVQILTRILSDSRTQILTVEKSIKMLSI---VAT-CSEGRLALSEEASCAGRVVE--RVMK-V---------G  320 (398)
Q Consensus       257 ~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~---La~-~~~~~~~i~~~~g~v~~Lv~--~l~~-~---------~  320 (398)
                      ..+++. ..|.|..++.+.+....++..++.+|..   ++. .++.....++   .+..+..  ..+. +         +
T Consensus       124 ~ei~~~-~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~---~le~if~~~~~~~~~~~~~~~~~~~  199 (309)
T PF05004_consen  124 EEIFEE-LKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELME---SLESIFLLSILKSDGNAPVVAAEDD  199 (309)
T ss_pred             HHHHHH-HHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHH---HHHHHHHHHhcCcCCCcccccCCCc
Confidence            566654 7889999997544444554555544444   333 3333332221   1221111  1121 1         1


Q ss_pred             hhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhcC
Q 015939          321 KTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGKA  382 (398)
Q Consensus       321 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~~  382 (398)
                      +.+...|+..-.-|...-+ ........ ...++.|..+|++. +..+|-.|...|-.+-+.
T Consensus       200 ~~l~~aAL~aW~lLlt~~~-~~~~~~~~-~~~~~~l~~lL~s~-d~~VRiAAGEaiAll~E~  258 (309)
T PF05004_consen  200 AALVAAALSAWALLLTTLP-DSKLEDLL-EEALPALSELLDSD-DVDVRIAAGEAIALLYEL  258 (309)
T ss_pred             cHHHHHHHHHHHHHHhcCC-HHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHH
Confidence            2344444444333332222 22222222 44689999999977 899999999999888773

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=95.44  E-value=1.9  Score=40.61  Aligned_cols=180  Identities=15%  Similarity=0.130  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC---chhHHHhhchhhHH
Q 015939          147 IAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD---NESKRRVLETENLL  223 (398)
Q Consensus       147 ~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~---~~~~~~i~~~~g~i  223 (398)
                      .+.++.++..|..+.......+.....   ....+..+.+.++.|..+-+..|+.++..++..   .+....+.  ....
T Consensus        57 ~~~Re~aL~~l~~~l~~~~~~d~v~~~---~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~--~~~~  131 (309)
T PF05004_consen   57 SSTREAALEALIRALSSRYLPDFVEDR---RETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIF--EELK  131 (309)
T ss_pred             HHHHHHHHHHHHHHHHhcccHHHHHHH---HHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHH--HHHH
Confidence            445688888877776543321111010   224678888889888777777788887766544   23334443  3578


Q ss_pred             HHHHHHhccc-cCHHHHHHHHHHHHHhcC---Cc-chHHHHHHcCChHHHHH--Hhcc--------cCcchhhHHHHHHH
Q 015939          224 SALFDYLKLA-EDQALNDAILSILITLSV---YR-SVKAQLVELGMVQILTR--ILSD--------SRTQILTVEKSIKM  288 (398)
Q Consensus       224 ~~Lv~lL~~~-~~~~~~~~a~~aL~~Ls~---~~-~~~~~~v~~g~v~~Lv~--lL~~--------~~~~~~~~~~al~~  288 (398)
                      |.|.+++.++ .+++++..++.+|.-++.   .+ +......  ..+..+..  .++.        ..+++.++..|+..
T Consensus       132 ~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~--~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~a  209 (309)
T PF05004_consen  132 PVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM--ESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSA  209 (309)
T ss_pred             HHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH--HHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHH
Confidence            8899998876 245666666666665532   22 2222111  12232221  1211        11235677777777


Q ss_pred             HHHHhC-CHH-HHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhh
Q 015939          289 LSIVAT-CSE-GRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMC  335 (398)
Q Consensus       289 L~~La~-~~~-~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~  335 (398)
                      -.-|.. .+. ......  ...++.|+.+|...+..+|..|-.+|+-|.
T Consensus       210 W~lLlt~~~~~~~~~~~--~~~~~~l~~lL~s~d~~VRiAAGEaiAll~  256 (309)
T PF05004_consen  210 WALLLTTLPDSKLEDLL--EEALPALSELLDSDDVDVRIAAGEAIALLY  256 (309)
T ss_pred             HHHHHhcCCHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            666654 232 233444  257999999999999999988877776553

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=95.39  E-value=1.2  Score=42.94  Aligned_cols=236  Identities=18%  Similarity=0.201  Sum_probs=127.3

Q ss_pred             HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHH-HHHhhhc
Q 015939           84 EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVR-VLNLIVN  162 (398)
Q Consensus        84 ~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~-~L~~l~~  162 (398)
                      .+.+.+++..|.++.. ...+..++-.|..-+.+ +.-|..+... |.+..++..+....+ +. ....++. ++..++.
T Consensus        20 ~Dev~ylld~l~~~~~-~s~Rr~sll~La~K~~~-~~Fr~~~ra~-g~~~~l~~~l~~~~~-d~-~~~l~~a~i~~~l~~   94 (361)
T PF07814_consen   20 ADEVEYLLDGLESSSS-SSVRRSSLLELASKCAD-PQFRRQFRAH-GLVKRLFKALSDAPD-DD-ILALATAAILYVLSR   94 (361)
T ss_pred             HHHHHHHHhhcccCCC-ccHHHHHHHHHHHHhCC-HHHHHHHHHc-CcHHHHHHHhccccc-hH-HHHHHHHHHHHHHcc
Confidence            5788999999984333 34677888888887755 7888999988 999999999965232 21 2333333 3444444


Q ss_pred             ccchHHHhhHhhhccCCChHHHHHHHhcC-ChhhHHHHHHHHHHhhcCchhHHHhhch-hhHHHHHHHHhcc--------
Q 015939          163 ENGVKEKLNRLILNTYNCLPLFLEILREG-NLDSKIGSIKILDSISLDNESKRRVLET-ENLLSALFDYLKL--------  232 (398)
Q Consensus       163 ~~~~~~~~~~~il~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~-~g~i~~Lv~lL~~--------  232 (398)
                      +...     ..++.+.+....++.++.-. ..+.....-         ...+..+-.. ...+...-..+..        
T Consensus        95 d~~~-----~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~---------~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~  160 (361)
T PF07814_consen   95 DGLN-----MHLLLDRDSLRLLLKLLKVDKSLDVPSDSD---------SSRKKNLSKVQQKSRSLCKELLSSGSSWKSPK  160 (361)
T ss_pred             CCcc-----hhhhhchhHHHHHHHHhccccccccccchh---------hhhhhhhhHHHHHHHHHHHHHHhccccccccC
Confidence            3332     23234566677777777611 000000000         0000111000 1111112222211        


Q ss_pred             ccCHHHHHHHHHHHHHhc---------------CCcchHHHHHHcCChHHHHHHhcc----c----------CcchhhHH
Q 015939          233 AEDQALNDAILSILITLS---------------VYRSVKAQLVELGMVQILTRILSD----S----------RTQILTVE  283 (398)
Q Consensus       233 ~~~~~~~~~a~~aL~~Ls---------------~~~~~~~~~v~~g~v~~Lv~lL~~----~----------~~~~~~~~  283 (398)
                      .....-+..|+.+|-.++               ..+..+..+-+.|+++.+++++.+    .          ..+-...+
T Consensus       161 ~~~lsp~~lall~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~  240 (361)
T PF07814_consen  161 PPELSPQTLALLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLE  240 (361)
T ss_pred             CcccccccHHHHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHH
Confidence            012233445555555552               112356667788899999999851    1          01113557


Q ss_pred             HHHHHHHHHhC-CHHHHHHHhhcc-CcHHHHHHH-Hhc---cChhHHHHHHHHHHHhhccC
Q 015939          284 KSIKMLSIVAT-CSEGRLALSEEA-SCAGRVVER-VMK---VGKTAREDAVVVIWSMCCVY  338 (398)
Q Consensus       284 ~al~~L~~La~-~~~~~~~i~~~~-g~v~~Lv~~-l~~---~~~~~~~~a~~~L~~l~~~~  338 (398)
                      .++.+|.+.+. ++++........ +.++.+... +..   ........+++++.|+++++
T Consensus       241 ~cl~ILEs~T~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n  301 (361)
T PF07814_consen  241 RCLSILESVTFLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNN  301 (361)
T ss_pred             HHHHHHHHHHhcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCC
Confidence            89999999775 445555554332 333333333 332   23334678999999999875

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.38  E-value=3.6  Score=42.40  Aligned_cols=189  Identities=12%  Similarity=0.107  Sum_probs=127.6

Q ss_pred             HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939           84 EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE  163 (398)
Q Consensus        84 ~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~  163 (398)
                      ...+++|.+.|..++.+  .+-.|+..|..+++.+|+|--.++      |.+..++.. ++ +-.++-..+..+.+|+.-
T Consensus       180 r~~FprL~EkLeDpDp~--V~SAAV~VICELArKnPknyL~LA------P~ffklltt-Ss-NNWmLIKiiKLF~aLtpl  249 (877)
T KOG1059|consen  180 RPCFPRLVEKLEDPDPS--VVSAAVSVICELARKNPQNYLQLA------PLFYKLLVT-SS-NNWVLIKLLKLFAALTPL  249 (877)
T ss_pred             hhhHHHHHHhccCCCch--HHHHHHHHHHHHHhhCCccccccc------HHHHHHHhc-cC-CCeehHHHHHHHhhcccc
Confidence            45678899999988876  888899999999999888765443      666777765 22 234556677778777754


Q ss_pred             cchHHHhhHhhhccCCChHHHHHHHhcCC-hhhHHHHHHHHH--HhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHH
Q 015939          164 NGVKEKLNRLILNTYNCLPLFLEILREGN-LDSKIGSIKILD--SISLD-NESKRRVLETENLLSALFDYLKLAEDQALN  239 (398)
Q Consensus       164 ~~~~~~~~~~il~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~--~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~  239 (398)
                      .+-   ..      .-.++.|.+++++.. ..+.-.++.++-  +++.. +++-+.+   .-++..|--++.+. |+.++
T Consensus       250 EPR---Lg------KKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asi---qLCvqKLr~fieds-DqNLK  316 (877)
T KOG1059|consen  250 EPR---LG------KKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASI---QLCVQKLRIFIEDS-DQNLK  316 (877)
T ss_pred             Cch---hh------hhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHH---HHHHHHHhhhhhcC-CccHH
Confidence            332   12      236899999998874 333444444443  33333 2333333   22566777777777 89999


Q ss_pred             HHHHHHHHHhcCCcc-hHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHh
Q 015939          240 DAILSILITLSVYRS-VKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALS  303 (398)
Q Consensus       240 ~~a~~aL~~Ls~~~~-~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~  303 (398)
                      --++-+++.+..... ....     --+.+++.|.  +.|+.++-.|+..|..+.. .+|..+|+
T Consensus       317 YlgLlam~KI~ktHp~~Vqa-----~kdlIlrcL~--DkD~SIRlrALdLl~gmVs-kkNl~eIV  373 (877)
T KOG1059|consen  317 YLGLLAMSKILKTHPKAVQA-----HKDLILRCLD--DKDESIRLRALDLLYGMVS-KKNLMEIV  373 (877)
T ss_pred             HHHHHHHHHHhhhCHHHHHH-----hHHHHHHHhc--cCCchhHHHHHHHHHHHhh-hhhHHHHH
Confidence            999999999876443 2211     2356788884  4789999999999999886 44545544

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=95.34  E-value=2.4  Score=44.93  Aligned_cols=174  Identities=14%  Similarity=0.152  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHcCCCCchhHHHHHHHHHHHhh-hhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939           86 EVRVWIEKIKSENESENSCVDYLVKVAKFAT-GCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN  164 (398)
Q Consensus        86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~-~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~  164 (398)
                      .+...+++|...+.+.|.+..|+..+..+.. .++..+..+.   ..++.++.-|+.   .-  .+-.|++++..++.+.
T Consensus       569 m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~---~~L~il~eRl~n---Ei--TRl~AvkAlt~Ia~S~  640 (1233)
T KOG1824|consen  569 MYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELP---RTLPILLERLGN---EI--TRLTAVKALTLIAMSP  640 (1233)
T ss_pred             HHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhH---HHHHHHHHHHhc---hh--HHHHHHHHHHHHHhcc
Confidence            3445666777766666777788877776443 3333333333   445666666655   11  3467888888777643


Q ss_pred             chHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCc--hhHHHhhchhhHHHHHHHHhccccCHHHHHHH
Q 015939          165 GVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDN--ESKRRVLETENLLSALFDYLKLAEDQALNDAI  242 (398)
Q Consensus       165 ~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a  242 (398)
                      -.-    ...-.-..+++.+.+++.......+.....++..|..+-  .......  .-++..+-.+++.. +....+.|
T Consensus       641 l~i----~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~~~~--e~vL~el~~Lises-dlhvt~~a  713 (1233)
T KOG1824|consen  641 LDI----DLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPAELL--EAVLVELPPLISES-DLHVTQLA  713 (1233)
T ss_pred             cee----ehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHH--HHHHHHhhhhhhHH-HHHHHHHH
Confidence            320    100112356888888888777777777777777776552  1212221  23455566666666 77788888


Q ss_pred             HHHHHHhcCCcchHHHHHHcCChHHHHHHhcc
Q 015939          243 LSILITLSVYRSVKAQLVELGMVQILTRILSD  274 (398)
Q Consensus       243 ~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~  274 (398)
                      ...|..+.........-+..-.++.++.++++
T Consensus       714 ~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~S  745 (1233)
T KOG1824|consen  714 VAFLTTLAIIQPSSLLKISNPILDEIIRLLRS  745 (1233)
T ss_pred             HHHHHHHHhcccHHHHHHhhhhHHHHHHHhhC
Confidence            99999888777766666666678888888863

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.34  E-value=0.0032  Score=41.42  Aligned_cols=45  Identities=16%  Similarity=0.189  Sum_probs=35.7

Q ss_pred             cccCccccCCCceecCCCcc-cchhHHHHHHhcCCCCCCcccccCC
Q 015939           15 RCPISLDVMKSPVSLCTGVT-YDRSSIQHWLESGHDTCPATMQILS   59 (398)
Q Consensus        15 ~Cpi~~~~~~dPv~~~~g~~-~~r~~i~~~~~~~~~~CP~~~~~l~   59 (398)
                      -|.||.+--.|.|+-.|||- .|..|=.+-|..++..||.||.+++
T Consensus         9 ECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    9 ECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             ceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            59999999999999999995 4667766655546778999998743

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.29  E-value=1.2  Score=48.06  Aligned_cols=220  Identities=13%  Similarity=0.094  Sum_probs=132.8

Q ss_pred             cHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-c-hhHHHhhchhhHH
Q 015939          146 EIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-N-ESKRRVLETENLL  223 (398)
Q Consensus       146 ~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~-~~~~~i~~~~g~i  223 (398)
                      +..++..+-++|..++...+...-....   ...+...|.+..++.+...+.....+|..|-.. + +....+.   ..|
T Consensus       667 ~~~vQkK~yrlL~~l~~~~s~~~~~~q~---i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~---k~I  740 (1176)
T KOG1248|consen  667 STKVQKKAYRLLEELSSSPSGEGLVEQR---IDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP---KLI  740 (1176)
T ss_pred             cHHHHHHHHHHHHHHhcCCchhhHHHHH---HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH---HHH
Confidence            4456688999998888763321000011   123455666666677777888888888887665 2 4555553   356


Q ss_pred             HHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcC------ChHHHHHHhccc--CcchhhHHHHHHHHHHHhCC
Q 015939          224 SALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELG------MVQILTRILSDS--RTQILTVEKSIKMLSIVATC  295 (398)
Q Consensus       224 ~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g------~v~~Lv~lL~~~--~~~~~~~~~al~~L~~La~~  295 (398)
                      +.++=.++.. +...++.+..+|..+..    .....+.|      .|...+.++...  .+...++...+-++..+...
T Consensus       741 ~EvIL~~Ke~-n~~aR~~Af~lL~~i~~----i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e  815 (1176)
T KOG1248|consen  741 PEVILSLKEV-NVKARRNAFALLVFIGA----IQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE  815 (1176)
T ss_pred             HHHHHhcccc-cHHHHhhHHHHHHHHHH----HHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH
Confidence            6666666666 88899999999998873    11112222      444444444321  12223332224444444432


Q ss_pred             HHH-H-HHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHH
Q 015939          296 SEG-R-LALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCG  373 (398)
Q Consensus       296 ~~~-~-~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~  373 (398)
                      ..+ - ...+  .+.+..+..+|.+.++.+.+.|++.+..++..-  ++....-...-.++.++.+.+.+ +-.+|.+..
T Consensus       816 ~~~~ld~~~l--~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~--pe~~l~~~~~~LL~sll~ls~d~-k~~~r~Kvr  890 (1176)
T KOG1248|consen  816 FKNILDDETL--EKLISMVCLYLASNSREIAKAAIGFIKVLVYKF--PEECLSPHLEELLPSLLALSHDH-KIKVRKKVR  890 (1176)
T ss_pred             HhccccHHHH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcC--CHHHHhhhHHHHHHHHHHHHHhh-hHHHHHHHH
Confidence            111 1 1222  255666777777899999999999999988754  33333333344788888877765 678888888


Q ss_pred             HHHHHHhc
Q 015939          374 DLVKVLGK  381 (398)
Q Consensus       374 ~lL~~l~~  381 (398)
                      .+|..|-+
T Consensus       891 ~LlekLir  898 (1176)
T KOG1248|consen  891 LLLEKLIR  898 (1176)
T ss_pred             HHHHHHHH
Confidence            88887765

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=95.28  E-value=0.017  Score=37.57  Aligned_cols=43  Identities=19%  Similarity=0.304  Sum_probs=22.0

Q ss_pred             ccCccccC--CCceec--CCCcccchhHHHHHHhcCCCCCCcccccC
Q 015939           16 CPISLDVM--KSPVSL--CTGVTYDRSSIQHWLESGHDTCPATMQIL   58 (398)
Q Consensus        16 Cpi~~~~~--~dPv~~--~~g~~~~r~~i~~~~~~~~~~CP~~~~~l   58 (398)
                      ||+|-+.|  +|--..  +||+.+||.|..+....+...||-||++.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            78888887  222233  49999999998888875677899999874

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=95.27  E-value=0.15  Score=39.13  Aligned_cols=92  Identities=10%  Similarity=0.136  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHhhcC--chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhc
Q 015939          196 KIGSIKILDSISLD--NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILS  273 (398)
Q Consensus       196 ~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~  273 (398)
                      |..+...|...+..  ......+   ...+++++..+.+. +..++..|+.+|++++........-.-...++.|.+++.
T Consensus         3 R~ggli~Laa~ai~l~~~~~~~l---~~Il~pVL~~~~D~-d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~   78 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKDISKYL---DEILPPVLKCFDDQ-DSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSA   78 (97)
T ss_pred             hhHHHHHHHHHHHHchHhHHHHH---HHHHHHHHHHcCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            34455556655444  2222222   46899999999999 999999999999999854332211122447888888884


Q ss_pred             ccCcchhhHHHHHHHHHHHhC
Q 015939          274 DSRTQILTVEKSIKMLSIVAT  294 (398)
Q Consensus       274 ~~~~~~~~~~~al~~L~~La~  294 (398)
                      +  .++.|+ .++..|.+|-+
T Consensus        79 D--~d~~Vr-~~a~~Ld~llk   96 (97)
T PF12755_consen   79 D--PDENVR-SAAELLDRLLK   96 (97)
T ss_pred             C--CchhHH-HHHHHHHHHhc
Confidence            3  556654 56677777643

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.25  E-value=0.011  Score=55.85  Aligned_cols=49  Identities=14%  Similarity=0.297  Sum_probs=39.9

Q ss_pred             CCcccccCccccCCCce-----e---cCCCcccchhHHHHHHhcC------CCCCCcccccCC
Q 015939           11 PNLFRCPISLDVMKSPV-----S---LCTGVTYDRSSIQHWLESG------HDTCPATMQILS   59 (398)
Q Consensus        11 ~~~~~Cpi~~~~~~dPv-----~---~~~g~~~~r~~i~~~~~~~------~~~CP~~~~~l~   59 (398)
                      -.++.|-||.+.-.+++     .   .+|.|+||-.||.+|-...      .+.||.||....
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~  221 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS  221 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence            35789999999999998     3   4599999999999997321      367999997644

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=95.24  E-value=1  Score=47.63  Aligned_cols=267  Identities=13%  Similarity=0.098  Sum_probs=143.0

Q ss_pred             HHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHH
Q 015939           89 VWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKE  168 (398)
Q Consensus        89 ~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~  168 (398)
                      .+++.+.+++-+  -+.-|..-|-.-.-.+..+-+.=.+. ..+..|+.+|++ .++  +++..|+++|.-++..-..+ 
T Consensus         9 ~LlekmtssDKD--fRfMAtsDLm~eLqkdsi~Ld~dSe~-kvv~~lLklL~D-~ng--EVQnlAVKClg~lvsKvke~-   81 (1233)
T KOG1824|consen    9 NLLEKMTSSDKD--FRFMATSDLMTELQKDSIKLDDDSER-KVVKMLLKLLED-KNG--EVQNLAVKCLGPLVSKVKED-   81 (1233)
T ss_pred             HHHHHccCCCcc--hhhhhHHHHHHHHHhhhhhccccchh-HHHHHHHHHHhc-cCc--HHHHHHHHHHHHHHhhchHH-
Confidence            578888888765  88888876654332322222222222 678888999987 444  46699999999887432221 


Q ss_pred             HhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHH-HhhcCchhHHHhhchhhHHHHHHHHhccc----c-CHHHHHHH
Q 015939          169 KLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILD-SISLDNESKRRVLETENLLSALFDYLKLA----E-DQALNDAI  242 (398)
Q Consensus       169 ~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~-~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~----~-~~~~~~~a  242 (398)
                        +-.     ..+..|..-+-+|....|.-+.-.|. .++.-+........ ..+++.+..-|...    . ...++-.+
T Consensus        82 --~le-----~~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la-~tV~~~~t~~l~~~i~~qe~~sai~~e~  153 (1233)
T KOG1824|consen   82 --QLE-----TIVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLA-ATVCKRITPKLKQAISKQEDVSAIKCEV  153 (1233)
T ss_pred             --HHH-----HHHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccc-cHHHHHHHHHHHHHhhhcccchhhHHHH
Confidence              111     12333333333444444433333333 33333321111122 34445555444432    1 22255566


Q ss_pred             HHHHHHhcC-CcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhc-cC
Q 015939          243 LSILITLSV-YRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMK-VG  320 (398)
Q Consensus       243 ~~aL~~Ls~-~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~-~~  320 (398)
                      +..|..+-+ ..+--.. ...+....++.-++  +....++.+|+.+|..|+..- ++....   +.+..|++-|.. .+
T Consensus       154 lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~--s~R~aVrKkai~~l~~la~~~-~~~ly~---~li~~Ll~~L~~~~q  226 (1233)
T KOG1824|consen  154 LDILADVLSRFGTLLPN-FHLSILKCLLPQLQ--SPRLAVRKKAITALGHLASSC-NRDLYV---ELIEHLLKGLSNRTQ  226 (1233)
T ss_pred             HHHHHHHHHhhcccCcc-hHHHHHHHHhhccc--ChHHHHHHHHHHHHHHHHHhc-CHHHHH---HHHHHHHhccCCCCc
Confidence            666654432 2221111 34456666777774  356778899999999998721 222222   234445554443 44


Q ss_pred             hhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHH---hhcCcHHHHHHHHHHHHHHhc
Q 015939          321 KTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVM---QSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       321 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l---~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      +....--+.+|..+|..++.+-..   --...+|.+....   +.+ +++.|+.....+..|=+
T Consensus       227 ~~~~rt~Iq~l~~i~r~ag~r~~~---h~~~ivp~v~~y~~~~e~~-dDELrE~~lQale~fl~  286 (1233)
T KOG1824|consen  227 MSATRTYIQCLAAICRQAGHRFGS---HLDKIVPLVADYCNKIEED-DDELREYCLQALESFLR  286 (1233)
T ss_pred             hHHHHHHHHHHHHHHHHhcchhhc---ccchhhHHHHHHhcccccC-cHHHHHHHHHHHHHHHH
Confidence            555555667777777765421111   1133556666666   444 78899999887777655

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=95.22  E-value=0.61  Score=47.67  Aligned_cols=186  Identities=14%  Similarity=0.124  Sum_probs=114.8

Q ss_pred             CCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCc--ch
Q 015939          178 YNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYR--SV  255 (398)
Q Consensus       178 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~--~~  255 (398)
                      .|.+..++....+.+..+|.+.+.+|..|.....-.+--+. .+....+..-|.+. .|.++..|+.+|..+-.++  ++
T Consensus        84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vf-n~l~e~l~~Rl~Dr-ep~VRiqAv~aLsrlQ~d~~dee  161 (892)
T KOG2025|consen   84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVF-NKLNEKLLIRLKDR-EPNVRIQAVLALSRLQGDPKDEE  161 (892)
T ss_pred             HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHH-HHHHHHHHHHHhcc-CchHHHHHHHHHHHHhcCCCCCc
Confidence            35677777777788899999999999999885322222233 46777777767776 7889999999999997432  23


Q ss_pred             HHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhcc----CcHHHHHHHH--hc---cChhHHHH
Q 015939          256 KAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEA----SCAGRVVERV--MK---VGKTARED  326 (398)
Q Consensus       256 ~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~----g~v~~Lv~~l--~~---~~~~~~~~  326 (398)
                      +      .++..+..+++ .+++++|++.++   .+++.++.....|++.+    |++..++.--  .+   ........
T Consensus       162 ~------~v~n~l~~liq-nDpS~EVRRaaL---snI~vdnsTlp~IveRarDV~~anRrlvY~r~lpkid~r~lsi~kr  231 (892)
T KOG2025|consen  162 C------PVVNLLKDLIQ-NDPSDEVRRAAL---SNISVDNSTLPCIVERARDVSGANRRLVYERCLPKIDLRSLSIDKR  231 (892)
T ss_pred             c------cHHHHHHHHHh-cCCcHHHHHHHH---HhhccCcccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhHHHH
Confidence            2      36677888887 467888888766   56666555555554332    3444333211  00   11111111


Q ss_pred             HHHHH-HHhhccCCChh----HHHHHHh------cCCHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 015939          327 AVVVI-WSMCCVYKDAR----VKEAVVN------SNGLTKLLLVMQSENEGIVRKMCGDLVKV  378 (398)
Q Consensus       327 a~~~L-~~l~~~~~~~~----~~~~~~~------~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~  378 (398)
                       +.+| |.+-.  ++.+    .+..+..      .|-+.-++..|+...+.++..+|...|..
T Consensus       232 -v~LlewgLnD--Re~sVk~A~~d~il~~Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~  291 (892)
T KOG2025|consen  232 -VLLLEWGLND--REFSVKGALVDAILSGWLRFSDGNILELLERLDVSNSSEVAVKALEALFS  291 (892)
T ss_pred             -HHHHHHhhhh--hhhHHHHHHHHHHHHHHhhhccccHHHHHHHhccccchHHHHHHHHHHHH
Confidence             1111 11211  1111    2222333      78888999999988788888888776665

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.19  E-value=0.26  Score=41.52  Aligned_cols=146  Identities=16%  Similarity=0.257  Sum_probs=92.9

Q ss_pred             HHHHHHHhhh-ccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-
Q 015939          132 VEAVFGVLNR-KRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-  209 (398)
Q Consensus       132 v~~L~~lL~~-~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-  209 (398)
                      +..++..|.. ...++  ++..++-++..+.  +...+..+..      +-+.+-..+..++.+....+..++..|-.. 
T Consensus         5 l~~lL~~L~~~~~~~~--~r~~a~v~l~k~l--~~~~~~~~~~------~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~   74 (157)
T PF11701_consen    5 LDTLLTSLDMLRQPEE--VRSHALVILSKLL--DAAREEFKEK------ISDFIESLLDEGEMDSLIIAFSALTALFPGP   74 (157)
T ss_dssp             CCHHHHHHHCTTTSCC--HHHHHHHHHHHHH--HHHHHHHHHH------HHHHHHHHHCCHHCCHHHHHHHHHHHHCTTT
T ss_pred             HHHHHHHhcccCCCHh--HHHHHHHHHHHHH--HHhHHHHHHH------HHHHHHHHHccccchhHHHHHHHHHHHhCCC
Confidence            4455555543 12333  3366666666663  1111111121      233444455555666788899999988776 


Q ss_pred             chhHHHhhchhhHHHHHHHHhc--cccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchh-hHHHHH
Q 015939          210 NESKRRVLETENLLSALFDYLK--LAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQIL-TVEKSI  286 (398)
Q Consensus       210 ~~~~~~i~~~~g~i~~Lv~lL~--~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~-~~~~al  286 (398)
                      ++....+....|.++.++.+..  .. +...+.+++.+|..-|.+.+.|..+.+ .+++.|-++++. +.++. ++..|+
T Consensus        75 ~dv~~~l~~~eg~~~~l~~~~~~~~~-~~~~~~~~lell~aAc~d~~~r~~I~~-~~~~~L~~~~~~-~~~~~~ir~~A~  151 (157)
T PF11701_consen   75 PDVGSELFLSEGFLESLLPLASRKSK-DRKVQKAALELLSAACIDKSCRTFISK-NYVSWLKELYKN-SKDDSEIRVLAA  151 (157)
T ss_dssp             HHHHHHHCCTTTHHHHHHHHHH-CTS--HHHHHHHHHHHHHHTTSHHHHHCCHH-HCHHHHHHHTTT-CC-HH-CHHHHH
T ss_pred             HHHHHHHHhhhhHHHHHHHHHhcccC-CHHHHHHHHHHHHHHHccHHHHHHHHH-HHHHHHHHHHcc-ccchHHHHHHHH
Confidence            6777777766899999999998  44 778888888888877777655555544 488999999953 34444 777777


Q ss_pred             HHHH
Q 015939          287 KMLS  290 (398)
Q Consensus       287 ~~L~  290 (398)
                      ..|.
T Consensus       152 v~L~  155 (157)
T PF11701_consen  152 VGLC  155 (157)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            7665

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=95.17  E-value=0.069  Score=42.31  Aligned_cols=70  Identities=7%  Similarity=0.087  Sum_probs=57.6

Q ss_pred             CChHHHHHHHh-cCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhc
Q 015939          179 NCLPLFLEILR-EGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLS  250 (398)
Q Consensus       179 g~i~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls  250 (398)
                      ..+..|+++|. +.++.+..-|+.-|+.+... ++.+..+.. .|+-..+..++.++ |++++..|+.++..+-
T Consensus        43 ~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~-lg~K~~vM~Lm~h~-d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   43 ELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEK-LGAKERVMELMNHE-DPEVRYEALLAVQKLM  114 (119)
T ss_dssp             HHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHH-HSHHHHHHHHTS-S-SHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHh-cChHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence            46899999995 44778888899999988887 777777765 89999999999998 9999999999987763

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=95.17  E-value=4  Score=43.41  Aligned_cols=245  Identities=15%  Similarity=0.165  Sum_probs=139.6

Q ss_pred             hhhhcCCcHHHHHHHhhhccC--CcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHh----cCC----h
Q 015939          124 FLASYGGFVEAVFGVLNRKRR--SEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILR----EGN----L  193 (398)
Q Consensus       124 ~i~~~~g~v~~L~~lL~~~~~--~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~----~~~----~  193 (398)
                      .+.+. |++..|+.++.+-.+  .+.......+..|...+.-    ..||+. +.+.|+++.|++.|.    .++    .
T Consensus       112 v~~~~-gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv----~~NR~~-Ll~~~al~~LL~~L~~~l~~~~~~~~~  185 (802)
T PF13764_consen  112 VLAEC-GGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKV----KVNRRA-LLELNALNRLLSVLNRALQANQNSSQA  185 (802)
T ss_pred             HhhcC-CCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhh----HHHHHH-HHHcCCHHHHHHHHHHHHhCccccccc
Confidence            34455 999999999976321  2334445555666555543    346787 667999999999985    323    5


Q ss_pred             hhHHHHHHHHHHhhcCch-hHHHh--h--c-------hhhHHHHHHHHhccc---cCHHHHHHHHHHHHHhcCCcchHHH
Q 015939          194 DSKIGSIKILDSISLDNE-SKRRV--L--E-------TENLLSALFDYLKLA---EDQALNDAILSILITLSVYRSVKAQ  258 (398)
Q Consensus       194 ~~~~~a~~~L~~L~~~~~-~~~~i--~--~-------~~g~i~~Lv~lL~~~---~~~~~~~~a~~aL~~Ls~~~~~~~~  258 (398)
                      ++-+....++..|..... .....  .  .       ...-+..|++.+.++   .++.+....+++|-.|+.+++.+..
T Consensus       186 ~i~E~LL~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~  265 (802)
T PF13764_consen  186 EIAEQLLEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMD  265 (802)
T ss_pred             hHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHH
Confidence            777777778877765522 11111  0  0       122366777777654   4688899999999999977664433


Q ss_pred             -HHHcCChHHHHHHhc--c-cCcch-hhHHHHHHHHHHHhCC---HHHHHHHhhccCcHHHHHHHHhccCh--------h
Q 015939          259 -LVELGMVQILTRILS--D-SRTQI-LTVEKSIKMLSIVATC---SEGRLALSEEASCAGRVVERVMKVGK--------T  322 (398)
Q Consensus       259 -~v~~g~v~~Lv~lL~--~-~~~~~-~~~~~al~~L~~La~~---~~~~~~i~~~~g~v~~Lv~~l~~~~~--------~  322 (398)
                       +++.  +.+.+++=.  . ...+. -..+..+.+..++-.+   ..-|+.++ ..|.+...+.+|...-+        +
T Consensus       266 ~Lv~~--F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il-~~GIv~~a~~YL~~~~P~~~~~~s~e  342 (802)
T PF13764_consen  266 ALVEH--FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKIL-ESGIVQDAIDYLLKHFPSLKNTDSPE  342 (802)
T ss_pred             HHHHH--HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHH-HhhHHHHHHHHHHHhCcccccCCCHH
Confidence             3331  222222111  0 01111 2223333333444332   34566777 56999999999876322        2


Q ss_pred             H--------HHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHH-hhcCcHHHHHHHHHHHHHHhc
Q 015939          323 A--------REDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVM-QSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       323 ~--------~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l-~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      -        -..++..|.-|+...  ... +.++..++++ ++..| +...+..+=.-|-.+|..+++
T Consensus       343 Wk~~l~~psLp~iL~lL~GLa~gh--~~t-Q~~~~~~~l~-~lH~LEqvss~~~IGslAEnlLeal~~  406 (802)
T PF13764_consen  343 WKEFLSRPSLPYILRLLRGLARGH--EPT-QLLIAEQLLP-LLHRLEQVSSEEHIGSLAENLLEALAE  406 (802)
T ss_pred             HHHHhcCCcHHHHHHHHHHHHhcC--HHH-HHHHHhhHHH-HHHHhhcCCCccchHHHHHHHHHHHhc
Confidence            2        246788888888753  223 3345566664 44555 444334444455556665555

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.15  E-value=2  Score=44.70  Aligned_cols=140  Identities=12%  Similarity=0.150  Sum_probs=76.4

Q ss_pred             HHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhc--hhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcc-hHHHHH-
Q 015939          185 LEILREGNLDSKIGSIKILDSISLDNESKRRVLE--TENLLSALFDYLKLAEDQALNDAILSILITLSVYRS-VKAQLV-  260 (398)
Q Consensus       185 v~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~--~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~-~~~~~v-  260 (398)
                      +.+|-.++.+.......+|..++.+-+.-..++.  ....+..+..+..   +..++..|+.+|..+-.+++ |.+.+. 
T Consensus       258 LriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~---~~~LrvlainiLgkFL~n~d~NirYvaL  334 (866)
T KOG1062|consen  258 LRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRS---NSGLRVLAINILGKFLLNRDNNIRYVAL  334 (866)
T ss_pred             HHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccC---CchHHHHHHHHHHHHhcCCccceeeeeh
Confidence            3344444555555555555555544222222221  0122333333322   33466666666666654443 322220 


Q ss_pred             ---------HcCCh----HHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHH
Q 015939          261 ---------ELGMV----QILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDA  327 (398)
Q Consensus       261 ---------~~g~v----~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a  327 (398)
                               +..+|    ..+++.|+  ++|..++++|+..+..|.. +.|...++.      .|+.+|...++..+...
T Consensus       335 n~L~r~V~~d~~avqrHr~tIleCL~--DpD~SIkrralELs~~lvn-~~Nv~~mv~------eLl~fL~~~d~~~k~~~  405 (866)
T KOG1062|consen  335 NMLLRVVQQDPTAVQRHRSTILECLK--DPDVSIKRRALELSYALVN-ESNVRVMVK------ELLEFLESSDEDFKADI  405 (866)
T ss_pred             hhHHhhhcCCcHHHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHhc-cccHHHHHH------HHHHHHHhccHHHHHHH
Confidence                     11111    24666774  4789999999999999886 445555542      48888888888888777


Q ss_pred             HHHHHHhhc
Q 015939          328 VVVIWSMCC  336 (398)
Q Consensus       328 ~~~L~~l~~  336 (398)
                      +.-+..++-
T Consensus       406 as~I~~laE  414 (866)
T KOG1062|consen  406 ASKIAELAE  414 (866)
T ss_pred             HHHHHHHHH
Confidence            766666653

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.07  E-value=1.2  Score=45.91  Aligned_cols=244  Identities=18%  Similarity=0.195  Sum_probs=126.7

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChH
Q 015939          103 SCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLP  182 (398)
Q Consensus       103 ~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~  182 (398)
                      .+..+.-.+.++-..   +.+..... |.++.|-+++.+   +++.++.+|+++|..+.....+.    .........+.
T Consensus       137 vRktaa~~vakl~~~---~~~~~~~~-gl~~~L~~ll~D---~~p~VVAnAlaaL~eI~e~~~~~----~~~~l~~~~~~  205 (734)
T KOG1061|consen  137 VRKTAAVCVAKLFDI---DPDLVEDS-GLVDALKDLLSD---SNPMVVANALAALSEIHESHPSV----NLLELNPQLIN  205 (734)
T ss_pred             HHHHHHHHHHHhhcC---Chhhcccc-chhHHHHHHhcC---CCchHHHHHHHHHHHHHHhCCCC----CcccccHHHHH
Confidence            566666566655433   55667777 999999999986   34567899999999887655420    11011222333


Q ss_pred             HHHHHHhcCChhhHHHHHHHHHHhhcC-c-hhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHH
Q 015939          183 LFLEILREGNLDSKIGSIKILDSISLD-N-ESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLV  260 (398)
Q Consensus       183 ~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v  260 (398)
                      .++..|.   ...-..-+.+|..++.. + +.++.    ...+..+...|.+. +..++-.+..+++.+..........+
T Consensus       206 ~lL~al~---ec~EW~qi~IL~~l~~y~p~d~~ea----~~i~~r~~p~Lqh~-n~avvlsavKv~l~~~~~~~~~~~~~  277 (734)
T KOG1061|consen  206 KLLEALN---ECTEWGQIFILDCLAEYVPKDSREA----EDICERLTPRLQHA-NSAVVLSAVKVILQLVKYLKQVNELL  277 (734)
T ss_pred             HHHHHHH---HhhhhhHHHHHHHHHhcCCCCchhH----HHHHHHhhhhhccC-CcceEeehHHHHHHHHHHHHHHHHHH
Confidence            4443333   23333334555555544 1 11111    33455566666665 55566666666666654443333333


Q ss_pred             HcCChHHHHHHhccc---------------------------------CcchhhHHHHHHHHHHHhCCHHHHHHHhhccC
Q 015939          261 ELGMVQILTRILSDS---------------------------------RTQILTVEKSIKMLSIVATCSEGRLALSEEAS  307 (398)
Q Consensus       261 ~~g~v~~Lv~lL~~~---------------------------------~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g  307 (398)
                      -...-++|+.+++..                                 ++--.+...=+.++..++. +++.+++.    
T Consensus       278 ~~K~~~pl~tlls~~~e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~-~~nl~qvl----  352 (734)
T KOG1061|consen  278 FKKVAPPLVTLLSSESEIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELAN-DANLAQVL----  352 (734)
T ss_pred             HHHhcccceeeecccchhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhh-HhHHHHHH----
Confidence            333445555555320                                 0111222223333333332 22222221    


Q ss_pred             cHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          308 CAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       308 ~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                        .-+.+.-...+....+.+++++.+++...     .+.   .+.++.|+.+++..-+-.+++ +...++.+-+
T Consensus       353 --~El~eYatevD~~fvrkaIraig~~aik~-----e~~---~~cv~~lLell~~~~~yvvqE-~~vvi~dilR  415 (734)
T KOG1061|consen  353 --AELKEYATEVDVDFVRKAVRAIGRLAIKA-----EQS---NDCVSILLELLETKVDYVVQE-AIVVIRDILR  415 (734)
T ss_pred             --HHHHHhhhhhCHHHHHHHHHHhhhhhhhh-----hhh---hhhHHHHHHHHhhcccceeee-hhHHHHhhhh
Confidence              11222233357777788899988887532     111   778888888888663444443 4444444433

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=95.06  E-value=1.7  Score=42.67  Aligned_cols=147  Identities=15%  Similarity=0.200  Sum_probs=104.5

Q ss_pred             HHHHHhcCChhhHHHHHHHHHHhhcCc----hhHHHhhchhhHHHHHHHHhccc------cCHHHHHHHHHHHHHhcCCc
Q 015939          184 FLEILREGNLDSKIGSIKILDSISLDN----ESKRRVLETENLLSALFDYLKLA------EDQALNDAILSILITLSVYR  253 (398)
Q Consensus       184 Lv~lL~~~~~~~~~~a~~~L~~L~~~~----~~~~~i~~~~g~i~~Lv~lL~~~------~~~~~~~~a~~aL~~Ls~~~  253 (398)
                      +..++...+.+-|..|...+..+..++    .+|..+.+ .=+++.+=++|.++      .+.--+.-++..|..+|+.+
T Consensus        16 ~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfe-AVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p   94 (698)
T KOG2611|consen   16 CLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFE-AVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP   94 (698)
T ss_pred             HHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHH-HhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence            445555556777777777778888774    35666766 45577888888764      12234567777888888887


Q ss_pred             c--hHHHHHHcCChHHHHHHhcccCcchh------hHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhc-cChhHH
Q 015939          254 S--VKAQLVELGMVQILTRILSDSRTQIL------TVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMK-VGKTAR  324 (398)
Q Consensus       254 ~--~~~~~v~~g~v~~Lv~lL~~~~~~~~------~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~-~~~~~~  324 (398)
                      +  ....|++  .||.|.+++.. ..|+.      +.+.+-.+|..+++.+.|.+.+. ..|+++.+.++-.. +..-.+
T Consensus        95 ElAsh~~~v~--~IP~llev~~~-~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Li-a~G~~~~~~Q~y~~~~~~~d~  170 (698)
T KOG2611|consen   95 ELASHEEMVS--RIPLLLEVMSK-GIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLI-ASGGLRVIAQMYELPDGSHDM  170 (698)
T ss_pred             hhccCHHHHH--hhhHHHHHHHh-cCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHH-hcCchHHHHHHHhCCCCchhH
Confidence            6  3445554  69999999962 23443      88999999999999999999998 46999999987654 445556


Q ss_pred             HHHHHHHHHhh
Q 015939          325 EDAVVVIWSMC  335 (398)
Q Consensus       325 ~~a~~~L~~l~  335 (398)
                      ..|+.++.-..
T Consensus       171 alal~Vlll~~  181 (698)
T KOG2611|consen  171 ALALKVLLLLV  181 (698)
T ss_pred             HHHHHHHHHHH
Confidence            66666665443

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.05  E-value=4.1  Score=41.95  Aligned_cols=145  Identities=12%  Similarity=0.133  Sum_probs=82.0

Q ss_pred             HHHHHHHhc----CChhhHHHHHHHHHHhhcCc----hhHH---HhhchhhHHHHHHHHhcc-ccCHHHHHHHHHHHHHh
Q 015939          182 PLFLEILRE----GNLDSKIGSIKILDSISLDN----ESKR---RVLETENLLSALFDYLKL-AEDQALNDAILSILITL  249 (398)
Q Consensus       182 ~~Lv~lL~~----~~~~~~~~a~~~L~~L~~~~----~~~~---~i~~~~g~i~~Lv~lL~~-~~~~~~~~~a~~aL~~L  249 (398)
                      -.++.+|..    .++..+..-..+|..+....    .++.   ..+. ..++-..+.+..+ +.++++...|+..|..+
T Consensus       259 vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~-naVLFeaI~l~~h~D~e~~ll~~~~~~Lg~f  337 (938)
T KOG1077|consen  259 VKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSNAK-NAVLFEAISLAIHLDSEPELLSRAVNQLGQF  337 (938)
T ss_pred             HHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhhhH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            456666652    25566666666666443321    2221   1222 2233333443322 23678888999999888


Q ss_pred             cCCcc-hHHHHH-H-------cC----C----hHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHH
Q 015939          250 SVYRS-VKAQLV-E-------LG----M----VQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRV  312 (398)
Q Consensus       250 s~~~~-~~~~~v-~-------~g----~----v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~L  312 (398)
                      -++.+ |.+.+. +       .+    +    .+.++..|. ...|..++++|+..|..+|. .++.+.|++      .+
T Consensus       338 ls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLk-terDvSirrravDLLY~mcD-~~Nak~IV~------el  409 (938)
T KOG1077|consen  338 LSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLK-TERDVSIRRRAVDLLYAMCD-VSNAKQIVA------EL  409 (938)
T ss_pred             hhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhc-cccchHHHHHHHHHHHHHhc-hhhHHHHHH------HH
Confidence            65543 544432 1       11    1    223444442 36677889999999999986 566666663      36


Q ss_pred             HHHHhccChhHHHHHHHHHHHhh
Q 015939          313 VERVMKVGKTAREDAVVVIWSMC  335 (398)
Q Consensus       313 v~~l~~~~~~~~~~a~~~L~~l~  335 (398)
                      +..|.+.+...+|.-+.=.+-|+
T Consensus       410 LqYL~tAd~sireeivlKvAILa  432 (938)
T KOG1077|consen  410 LQYLETADYSIREEIVLKVAILA  432 (938)
T ss_pred             HHHHhhcchHHHHHHHHHHHHHH
Confidence            77777777777776654444444

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=95.01  E-value=0.29  Score=42.60  Aligned_cols=121  Identities=17%  Similarity=0.133  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHHhcCCcchHHHHHHc----------------CChHHHHHHhcc----cCcchhhHHHHHHHHHHHhCCHH
Q 015939          238 LNDAILSILITLSVYRSVKAQLVEL----------------GMVQILTRILSD----SRTQILTVEKSIKMLSIVATCSE  297 (398)
Q Consensus       238 ~~~~a~~aL~~Ls~~~~~~~~~v~~----------------g~v~~Lv~lL~~----~~~~~~~~~~al~~L~~La~~~~  297 (398)
                      ....++.+|.||+..++.+..+.+.                .++..|++.+..    ......-......+|.|++..++
T Consensus        11 ~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~   90 (192)
T PF04063_consen   11 LADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPE   90 (192)
T ss_pred             hHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHH
Confidence            5566788888888887777765532                256667777743    11234566788999999999999


Q ss_pred             HHHHHhhcc-Cc--HHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHh---cCCHHHHHHHHh
Q 015939          298 GRLALSEEA-SC--AGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVN---SNGLTKLLLVMQ  361 (398)
Q Consensus       298 ~~~~i~~~~-g~--v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~---~g~~~~Ll~~l~  361 (398)
                      +|+.+.... +.  +..|+-++...+..-+.-++++|.|+|...   +.-..+..   .++++.|+.-|-
T Consensus        91 gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~---~~H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   91 GRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDT---DSHEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             HHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccH---hHHHHhcCchhhhhHHHHHhhcc
Confidence            999998543 33  666777777678888889999999999853   33344544   578888888775

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=94.96  E-value=0.78  Score=47.94  Aligned_cols=162  Identities=12%  Similarity=0.146  Sum_probs=102.4

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChH
Q 015939          103 SCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLP  182 (398)
Q Consensus       103 ~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~  182 (398)
                      .+..|++.+-.....++..-.       ..+-+++.+.+ .+  .++..-.---|.+.+...++     ..++    ++.
T Consensus        35 ~kidAmK~iIa~M~~G~dmss-------Lf~dViK~~~t-rd--~ElKrL~ylYl~~yak~~P~-----~~lL----avN   95 (757)
T COG5096          35 KKIDAMKKIIAQMSLGEDMSS-------LFPDVIKNVAT-RD--VELKRLLYLYLERYAKLKPE-----LALL----AVN   95 (757)
T ss_pred             HHHHHHHHHHHHHhcCCChHH-------HHHHHHHHHHh-cC--HHHHHHHHHHHHHHhccCHH-----HHHH----HHH
Confidence            567777665543333333221       23334555543 22  33323333334444444432     2212    466


Q ss_pred             HHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHc
Q 015939          183 LFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVEL  262 (398)
Q Consensus       183 ~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~  262 (398)
                      .+.+=+.+.++.+|..|.+++..|-..    +.+   ..+++++.+++.++ ++.+++.|+-++.++=.-+  +....+.
T Consensus        96 ti~kDl~d~N~~iR~~AlR~ls~l~~~----el~---~~~~~~ik~~l~d~-~ayVRk~Aalav~kly~ld--~~l~~~~  165 (757)
T COG5096          96 TIQKDLQDPNEEIRGFALRTLSLLRVK----ELL---GNIIDPIKKLLTDP-HAYVRKTAALAVAKLYRLD--KDLYHEL  165 (757)
T ss_pred             HHHhhccCCCHHHHHHHHHHHHhcChH----HHH---HHHHHHHHHHccCC-cHHHHHHHHHHHHHHHhcC--Hhhhhcc
Confidence            777777888999998887777766442    222   35788899999988 8889999999988874322  2223478


Q ss_pred             CChHHHHHHhcccCcchhhHHHHHHHHHHHhCC
Q 015939          263 GMVQILTRILSDSRTQILTVEKSIKMLSIVATC  295 (398)
Q Consensus       263 g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~  295 (398)
                      |.+..+..++.  +++|.++.+|+.+|..+...
T Consensus       166 g~~~~l~~l~~--D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         166 GLIDILKELVA--DSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             cHHHHHHHHhh--CCCchHHHHHHHHHHHhchh
Confidence            88888888884  47899999999999888653

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=94.94  E-value=0.17  Score=36.42  Aligned_cols=66  Identities=17%  Similarity=0.120  Sum_probs=58.0

Q ss_pred             HHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhh
Q 015939          238 LNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSE  304 (398)
Q Consensus       238 ~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~  304 (398)
                      -++++++++.++.+.+.....+-+.+.++.++++.. .++...++--|..+|..++...++.+.+.+
T Consensus         3 ~lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~-~s~v~siRGT~fy~Lglis~T~~G~~~L~~   68 (73)
T PF14668_consen    3 ELKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAE-NSPVLSIRGTCFYVLGLISSTEEGAEILDE   68 (73)
T ss_pred             HHHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHH-hCCccchHHHHHHHHHHHhCCHHHHHHHHH
Confidence            368899999999998888877778899999999997 356788999999999999999999988763

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=94.92  E-value=1.9  Score=36.98  Aligned_cols=91  Identities=18%  Similarity=0.191  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHH
Q 015939          148 AVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALF  227 (398)
Q Consensus       148 ~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv  227 (398)
                      .++.+++.++.-|+..-++        + -...++.+...|++.++.+|..|+.+|..|...+-.|..    ...+..++
T Consensus         3 ~vR~n~i~~l~DL~~r~~~--------~-ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k----~~l~~~~l   69 (178)
T PF12717_consen    3 SVRNNAIIALGDLCIRYPN--------L-VEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK----GQLFSRIL   69 (178)
T ss_pred             HHHHHHHHHHHHHHHhCcH--------H-HHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh----hhhhHHHH
Confidence            4568888888888764332        1 134689999999999999999999999999877533332    23347777


Q ss_pred             HHhccccCHHHHHHHHHHHHHhcCC
Q 015939          228 DYLKLAEDQALNDAILSILITLSVY  252 (398)
Q Consensus       228 ~lL~~~~~~~~~~~a~~aL~~Ls~~  252 (398)
                      .+|.+. +++++..|..++..+...
T Consensus        70 ~~l~D~-~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   70 KLLVDE-NPEIRSLARSFFSELLKK   93 (178)
T ss_pred             HHHcCC-CHHHHHHHHHHHHHHHHh
Confidence            888887 899999999999999865

>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]

Probab=94.88  E-value=0.027  Score=49.13  Aligned_cols=57  Identities=23%  Similarity=0.295  Sum_probs=42.7

Q ss_pred             ccccCccccCCCceecC-CCcccchhHHHHHHhc-CCCCCCc--ccccCCCCCCcccHHHH
Q 015939           14 FRCPISLDVMKSPVSLC-TGVTYDRSSIQHWLES-GHDTCPA--TMQILSTKEFVPNLTLH   70 (398)
Q Consensus        14 ~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~-~~~~CP~--~~~~l~~~~l~~n~~l~   70 (398)
                      .+|||+.+....|++.. |+|.|++..|.+.+.. -.+-||+  |-+.+.-.++..++.+.
T Consensus       190 nrCpitl~p~~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~~v~d~IlE  250 (275)
T COG5627         190 NRCPITLNPDFYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDPYVCDHILE  250 (275)
T ss_pred             ccCCcccCcchhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccchhhhHHHH
Confidence            47999999999999875 9999999999999863 2345887  54555455555555443

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=94.62  E-value=0.42  Score=41.24  Aligned_cols=113  Identities=18%  Similarity=0.216  Sum_probs=78.4

Q ss_pred             HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhh-hhhhhhhhcCCcHHHHHHHhhhc------cCCcHHHHHHHHHHHH
Q 015939           86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCE-ANRRFLASYGGFVEAVFGVLNRK------RRSEIAVLESAVRVLN  158 (398)
Q Consensus        86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~-~~r~~i~~~~g~v~~L~~lL~~~------~~~~~~~~~~al~~L~  158 (398)
                      ....+++.+.+...    ..+.+..|+...+..+ .--+.+.+. ||+..|+.+|...      ...+......++++|.
T Consensus        67 ~p~~~i~~L~~~~~----~~~~L~~L~v~Lrt~~~~Wv~~Fl~~-~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clk  141 (187)
T PF06371_consen   67 SPEWYIKKLKSRPS----TSKILKSLRVSLRTNPISWVQEFLEL-GGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLK  141 (187)
T ss_dssp             HHHHHHHHHTTT------HHHHHHHHHHHHHHS-HHHHHHH-HH-HHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHccCc----cHHHHHHHHHHhccCCchHHHHhccC-CCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHH
Confidence            45567777776654    2256666665554433 333455567 9999999999652      1123456688999999


Q ss_pred             hhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhh
Q 015939          159 LIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSIS  207 (398)
Q Consensus       159 ~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~  207 (398)
                      .+..+..+    ...++...+.+..++..|.+.+..++..++.+|..++
T Consensus       142 al~n~~~G----~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  142 ALMNTKYG----LEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             HHTSSHHH----HHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             HHHccHHH----HHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            98887665    5666888999999999999999999999999998775

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=94.60  E-value=4.3  Score=38.65  Aligned_cols=196  Identities=8%  Similarity=0.037  Sum_probs=137.4

Q ss_pred             cCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhH-----HHhhch-hhHHHHHHHHhccccCHHHHHHHHHHHHHh
Q 015939          177 TYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESK-----RRVLET-ENLLSALFDYLKLAEDQALNDAILSILITL  249 (398)
Q Consensus       177 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~-----~~i~~~-~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L  249 (398)
                      ..+.+..|+..|..-+.+.|..++.+..++... .+.+     ..+... ...+..|   ++...+++.--.+-..|+..
T Consensus        74 ~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L---~~gy~~~dial~~g~mlRec  150 (335)
T PF08569_consen   74 RSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDIL---LRGYENPDIALNCGDMLREC  150 (335)
T ss_dssp             HHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHH---HHGGGSTTTHHHHHHHHHHH
T ss_pred             HhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHH---HHHhcCccccchHHHHHHHH
Confidence            458899999999999999999999999988766 2332     234332 3333333   33334566777777888888


Q ss_pred             cCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHH-hCCHHHHHHHhhcc--CcHHHHHHHHhccChhHHHH
Q 015939          250 SVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIV-ATCSEGRLALSEEA--SCAGRVVERVMKVGKTARED  326 (398)
Q Consensus       250 s~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~L-a~~~~~~~~i~~~~--g~v~~Lv~~l~~~~~~~~~~  326 (398)
                      ...+...+.+.....+..+.+.+.  .+.-++...|..+++.| ..+.....+.....  ..+.....+|.+++--++..
T Consensus       151 ~k~e~l~~~iL~~~~f~~ff~~~~--~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrq  228 (335)
T PF08569_consen  151 IKHESLAKIILYSECFWKFFKYVQ--LPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQ  228 (335)
T ss_dssp             TTSHHHHHHHHTSGGGGGHHHHTT--SSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHH
T ss_pred             HhhHHHHHHHhCcHHHHHHHHHhc--CCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehh
Confidence            888887888888889999999984  47889999999999995 55777766665321  45667778888899999999


Q ss_pred             HHHHHHHhhccCCChhHHHHHHh----cCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          327 AVVVIWSMCCVYKDARVKEAVVN----SNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       327 a~~~L~~l~~~~~~~~~~~~~~~----~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      ++..|..|-..   +.+...|.+    ..-+..++.+|++. +..+|-.|=.+.|.+-.
T Consensus       229 slkLL~ellld---r~n~~vm~~yi~~~~nLkl~M~lL~d~-sk~Iq~eAFhvFKvFVA  283 (335)
T PF08569_consen  229 SLKLLGELLLD---RSNFNVMTRYISSPENLKLMMNLLRDK-SKNIQFEAFHVFKVFVA  283 (335)
T ss_dssp             HHHHHHHHHHS---GGGHHHHHHHTT-HHHHHHHHHHTT-S--HHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHc---hhHHHHHHHHHCCHHHHHHHHHHhcCc-chhhhHHHHHHHHHHHh
Confidence            99999998764   333333322    33455555566655 77888888777777644

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=94.54  E-value=0.024  Score=51.23  Aligned_cols=49  Identities=24%  Similarity=0.392  Sum_probs=38.6

Q ss_pred             cccCccc-cCCCce----ecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCC
Q 015939           15 RCPISLD-VMKSPV----SLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEF   63 (398)
Q Consensus        15 ~Cpi~~~-~~~dPv----~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l   63 (398)
                      .||.|+. .+.+|-    +.+|||+.|-+|.-.-|..|...||.|+..|....+
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nf   55 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNF   55 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhccc
Confidence            4888863 444552    237999999999999999888999999988876544

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=94.51  E-value=1.1  Score=38.46  Aligned_cols=93  Identities=14%  Similarity=0.174  Sum_probs=70.9

Q ss_pred             ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHH
Q 015939          192 NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRI  271 (398)
Q Consensus       192 ~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~l  271 (398)
                      ++.+|.+++.+++.|+..-.   .++  ...++.+...|+++ ++.+++.|+.+|..|-..+-.+.+   ...+..++.+
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~---~~v--e~~~~~l~~~L~D~-~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~   71 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYP---NLV--EPYLPNLYKCLRDE-DPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKL   71 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCc---HHH--HhHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHH
Confidence            46788999999998887532   222  34678899999999 999999999999999766543321   2233677778


Q ss_pred             hcccCcchhhHHHHHHHHHHHhCC
Q 015939          272 LSDSRTQILTVEKSIKMLSIVATC  295 (398)
Q Consensus       272 L~~~~~~~~~~~~al~~L~~La~~  295 (398)
                      +.  +++++++..|...+..+...
T Consensus        72 l~--D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   72 LV--DENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             Hc--CCCHHHHHHHHHHHHHHHHh
Confidence            84  57999999999999999874

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=94.49  E-value=0.58  Score=40.75  Aligned_cols=94  Identities=14%  Similarity=0.145  Sum_probs=71.9

Q ss_pred             CChHHHHHHHhcC------ChhhHHHHHHHHHHhhcCchhHHHhhch-hhH--HHHHHHHhccccCHHHHHHHHHHHHHh
Q 015939          179 NCLPLFLEILREG------NLDSKIGSIKILDSISLDNESKRRVLET-ENL--LSALFDYLKLAEDQALNDAILSILITL  249 (398)
Q Consensus       179 g~i~~Lv~lL~~~------~~~~~~~a~~~L~~L~~~~~~~~~i~~~-~g~--i~~Lv~lL~~~~~~~~~~~a~~aL~~L  249 (398)
                      ..+..|++.+..|      ...-..+.+.+|.|++..++.|..+... .+.  +..|+.+.++. +..-+..++.+|.|.
T Consensus        52 ~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~NlS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~-s~iRR~Gva~~IrNc  130 (192)
T PF04063_consen   52 FYLDKLLDLFVKGADPSYNKKDNYDYLASVLANLSQLPEGRQFFLDPQRYDGPLQKLLPFTEHK-SVIRRGGVAGTIRNC  130 (192)
T ss_pred             HHHHHHHHHHHcCCcccCCCCcchhHHHHHHHHhcCCHHHHHHHhCchhhhhHHHHHHHHhccC-cHHHHHHHHHHHHHh
Confidence            4688888888762      3445678899999999999999999862 234  67777778888 887889999999999


Q ss_pred             cCCcchHHHHHH---cCChHHHHHHhc
Q 015939          250 SVYRSVKAQLVE---LGMVQILTRILS  273 (398)
Q Consensus       250 s~~~~~~~~~v~---~g~v~~Lv~lL~  273 (398)
                      |...+....+..   .+.+|.|+--|.
T Consensus       131 cFd~~~H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen  131 CFDTDSHEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             hccHhHHHHhcCchhhhhHHHHHhhcc
Confidence            999888777764   355666555553

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.48  E-value=0.022  Score=51.81  Aligned_cols=45  Identities=24%  Similarity=0.496  Sum_probs=37.6

Q ss_pred             CcccccCccccCCC---ceecCCCcccchhHHHHHHhcCC--CCCCcccc
Q 015939           12 NLFRCPISLDVMKS---PVSLCTGVTYDRSSIQHWLESGH--DTCPATMQ   56 (398)
Q Consensus        12 ~~~~Cpi~~~~~~d---Pv~~~~g~~~~r~~i~~~~~~~~--~~CP~~~~   56 (398)
                      .-|+||+.++.-.|   ||.+.|||..-++++.+.-..|.  ..||-|..
T Consensus       335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~  384 (396)
T COG5109         335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPE  384 (396)
T ss_pred             ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCc
Confidence            34799999998876   99999999999999999887764  35888854

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=94.37  E-value=0.12  Score=41.06  Aligned_cols=72  Identities=10%  Similarity=0.069  Sum_probs=56.0

Q ss_pred             hhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHh
Q 015939          220 ENLLSALFDYLKLAEDQALNDAILSILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVA  293 (398)
Q Consensus       220 ~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La  293 (398)
                      ..++..|+++|....|+....-|+.=|..++..- ..+..+-+.|+=..++++|.  +++++|+..|+.++..|-
T Consensus        42 ~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~--h~d~eVr~eAL~avQklm  114 (119)
T PF11698_consen   42 FELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMN--HEDPEVRYEALLAVQKLM  114 (119)
T ss_dssp             GHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS---SSHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhc--CCCHHHHHHHHHHHHHHH
Confidence            4578999999965547888888888899998654 45555558888899999994  589999999999887653

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=94.17  E-value=0.014  Score=41.90  Aligned_cols=47  Identities=19%  Similarity=0.407  Sum_probs=22.5

Q ss_pred             cccccCccccCC-C---ceec----CCCcccchhHHHHHHhc--C-C-------CCCCcccccCC
Q 015939           13 LFRCPISLDVMK-S---PVSL----CTGVTYDRSSIQHWLES--G-H-------DTCPATMQILS   59 (398)
Q Consensus        13 ~~~Cpi~~~~~~-d---Pv~~----~~g~~~~r~~i~~~~~~--~-~-------~~CP~~~~~l~   59 (398)
                      +..|+||...+. +   |++.    .||++|=..|+.+||..  + .       ..||.|+++++
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            567999998765 2   4443    58999999999999852  1 1       24999988764

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=94.17  E-value=0.023  Score=53.28  Aligned_cols=48  Identities=21%  Similarity=0.259  Sum_probs=41.6

Q ss_pred             cccCccccCCCceecCCCcccchhHHHHHHh-cCCCCCCcccccCCCCC
Q 015939           15 RCPISLDVMKSPVSLCTGVTYDRSSIQHWLE-SGHDTCPATMQILSTKE   62 (398)
Q Consensus        15 ~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~-~~~~~CP~~~~~l~~~~   62 (398)
                      .|-||.+-=+|=-+=+|||-.|-.|+..|.. .+..+||.||..++...
T Consensus       371 LCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte  419 (563)
T KOG1785|consen  371 LCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE  419 (563)
T ss_pred             HHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence            6999999999988889999999999999984 34678999998877543

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=94.16  E-value=0.01  Score=60.16  Aligned_cols=45  Identities=18%  Similarity=0.404  Sum_probs=26.5

Q ss_pred             cccCccccCCCceec---CCCcccchhHHHHHHhcCCCCCCcccccCCC
Q 015939           15 RCPISLDVMKSPVSL---CTGVTYDRSSIQHWLESGHDTCPATMQILST   60 (398)
Q Consensus        15 ~Cpi~~~~~~dPv~~---~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~   60 (398)
                      .||+|..-+.|-.+.   +|+|-||..||..|..- ..+||+|+..|..
T Consensus       125 ~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~-aqTCPiDR~EF~~  172 (1134)
T KOG0825|consen  125 QCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRC-AQTCPVDRGEFGE  172 (1134)
T ss_pred             hhhHHHHHHHHHhhccccccccccHHHHhhhhhhh-cccCchhhhhhhe
Confidence            455555555555443   36666666666666542 4567777766553

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=94.15  E-value=0.012  Score=60.80  Aligned_cols=48  Identities=19%  Similarity=0.365  Sum_probs=40.0

Q ss_pred             ccccCccccCCCceecCCCcccchhHHHHHHhcC-CCCCCcccccCCCCC
Q 015939           14 FRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESG-HDTCPATMQILSTKE   62 (398)
Q Consensus        14 ~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~-~~~CP~~~~~l~~~~   62 (398)
                      +.|++|.+ ..+||++.|||.||++|+.+-+..- ...||.|+..+....
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~  503 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK  503 (674)
T ss_pred             cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence            78999999 9999999999999999999987542 336999987665443

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=94.12  E-value=0.2  Score=50.21  Aligned_cols=152  Identities=11%  Similarity=0.113  Sum_probs=106.3

Q ss_pred             hHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHH---HHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHH
Q 015939          221 NLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQ---LVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSE  297 (398)
Q Consensus       221 g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~---~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~  297 (398)
                      -.+..++.+|+++ .+.++..|+.....|+.--.+|..   +...|.  .|.+-|  ...++++....++++..+...-.
T Consensus       604 ~ivStiL~~L~~k-~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~l--ge~ypEvLgsil~Ai~~I~sv~~  678 (975)
T COG5181         604 MIVSTILKLLRSK-PPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENL--GEDYPEVLGSILKAICSIYSVHR  678 (975)
T ss_pred             HHHHHHHHHhcCC-CccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhc--CcccHHHHHHHHHHHHHHhhhhc
Confidence            4566777888888 889999999998888643332222   233443  366777  34788998888888887765333


Q ss_pred             HHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCCh-hHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHH
Q 015939          298 GRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDA-RVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLV  376 (398)
Q Consensus       298 ~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL  376 (398)
                      -+..----.|.+|.|.-+|++...+++.+.+..+..+|..+++. ..++.|.   .--.|+..|.+. +.++|++|..-+
T Consensus       679 ~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~-nKeiRR~A~~tf  754 (975)
T COG5181         679 FRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSW-NKEIRRNATETF  754 (975)
T ss_pred             ccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHh-hHHHHHhhhhhh
Confidence            22111011389999999999999999999999999999987531 2344442   122366677777 789999998888


Q ss_pred             HHHhc
Q 015939          377 KVLGK  381 (398)
Q Consensus       377 ~~l~~  381 (398)
                      ..+++
T Consensus       755 G~Is~  759 (975)
T COG5181         755 GCISR  759 (975)
T ss_pred             hhHHh
Confidence            77776

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=94.08  E-value=1.1  Score=41.11  Aligned_cols=190  Identities=18%  Similarity=0.142  Sum_probs=110.9

Q ss_pred             HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCc-HHHHHHHhhhcc-CCcHHHHHHHHHHHHhhhcc
Q 015939           86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGF-VEAVFGVLNRKR-RSEIAVLESAVRVLNLIVNE  163 (398)
Q Consensus        86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~-v~~L~~lL~~~~-~~~~~~~~~al~~L~~l~~~  163 (398)
                      ....+.+.+.+...+  .+.-++.-+|-++.+ +..-..+...+++ ...+..++.... ......+--+++++.|+..+
T Consensus        64 ~~~~~~~~~~~Wp~~--~~fP~lDLlRl~~l~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~  140 (268)
T PF08324_consen   64 WLILLLKILLSWPPE--SRFPALDLLRLAALH-PPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSH  140 (268)
T ss_dssp             HHHHHHHHHCCS-CC--C-HHHHHHHHHHCCC-HCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHhCCCc--cchhHHhHHHHHHhC-ccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCC
Confidence            344455556665544  788888888877765 4444445444233 455555554421 23344556789999999987


Q ss_pred             cchHHHhhHhhhccCC-ChHHHHHHHhcC----ChhhHHHHHHHHHHhhcCc-hhH-HHhhchhhHHHHHHHHh-ccccC
Q 015939          164 NGVKEKLNRLILNTYN-CLPLFLEILREG----NLDSKIGSIKILDSISLDN-ESK-RRVLETENLLSALFDYL-KLAED  235 (398)
Q Consensus       164 ~~~~~~~~~~il~~~g-~i~~Lv~lL~~~----~~~~~~~a~~~L~~L~~~~-~~~-~~i~~~~g~i~~Lv~lL-~~~~~  235 (398)
                      ...    +..++...+ .+...+..+...    +..++..++.++.|++..- ..+ ..-.. ...+..++..+ ....+
T Consensus       141 ~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~-~~ll~~i~~~~~~~~~d  215 (268)
T PF08324_consen  141 PPG----RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQ-SELLSSIIEVLSREESD  215 (268)
T ss_dssp             CCC----HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHH-HHHHHHHHHHCHCCHTS
T ss_pred             Ccc----HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHH-HHHHHHHHHHhccccCC
Confidence            665    565454444 343333333333    6788888888899997652 222 11111 23566666743 33358


Q ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHH-cCChHHHHHHhcccCcchhhHHH
Q 015939          236 QALNDAILSILITLSVYRSVKAQLVE-LGMVQILTRILSDSRTQILTVEK  284 (398)
Q Consensus       236 ~~~~~~a~~aL~~Ls~~~~~~~~~v~-~g~v~~Lv~lL~~~~~~~~~~~~  284 (398)
                      +++.-.++.+|.+|...++....... .|+-..+-..-. ...++.+++-
T Consensus       216 ~Ea~~R~LvAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~-~~~e~ri~~v  264 (268)
T PF08324_consen  216 EEALYRLLVALGTLLSSSDSAKQLAKSLDVKSVLSKKAN-KSKEPRIKEV  264 (268)
T ss_dssp             HHHHHHHHHHHHHHHCCSHHHHHHCCCCTHHHHHHHHHH-HTTSHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccChhHHHHHHHcChHHHHHHHHh-cccchHHHHH
Confidence            99999999999999977777766665 344433333332 2334555443

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.04  E-value=0.026  Score=54.49  Aligned_cols=51  Identities=16%  Similarity=0.322  Sum_probs=38.3

Q ss_pred             CCCcccccCccccC-----------------CCceecCCCcccchhHHHHHHhcCCCCCCcccccCCC
Q 015939           10 VPNLFRCPISLDVM-----------------KSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILST   60 (398)
Q Consensus        10 ~~~~~~Cpi~~~~~-----------------~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~   60 (398)
                      ....--|+||....                 ++=+++||.|.|-+.|+++|.+.-...||+||.+|.+
T Consensus       568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            44445699987532                 2345679999999999999998545589999998753

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=93.96  E-value=0.26  Score=38.01  Aligned_cols=61  Identities=11%  Similarity=0.087  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccch
Q 015939          104 CVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGV  166 (398)
Q Consensus       104 ~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~  166 (398)
                      +...+..|.+++..++.++..+.+. |++|.+++.-.- .+.++-+.|-|+.++.+|+.+.+.
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~-~Gi~liL~~c~i-D~~nP~irEwai~aiRnL~e~n~e   63 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVREL-GGIPLILSCCNI-DDHNPFIREWAIFAIRNLCEGNPE   63 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHc-CChHHHHHhcCC-CcccHHHHHHHHHHHHHHHhCCHH
Confidence            4456788899999999999999999 889999988654 445667789999999999986654

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=93.90  E-value=0.81  Score=41.58  Aligned_cols=97  Identities=12%  Similarity=0.127  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHhcC-CcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHH-HhCCHHHHHHHhhccCcHHHHHHH
Q 015939          238 LNDAILSILITLSV-YRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSI-VATCSEGRLALSEEASCAGRVVER  315 (398)
Q Consensus       238 ~~~~a~~aL~~Ls~-~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~-La~~~~~~~~i~~~~g~v~~Lv~~  315 (398)
                      ....|+.+|--++- +++.+..+.+..++..++.+|. +...+.++..++.+|-. |..++.+.+.+. ..+|+..++.+
T Consensus       107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~-~~~~~~i~~a~L~tLv~iLld~p~N~r~FE-~~~Gl~~v~~l  184 (257)
T PF08045_consen  107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLS-PSNPPAIQSACLDTLVCILLDSPENQRDFE-ELNGLSTVCSL  184 (257)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhc-cCCCchHHHHHHHHHHHHHHcChHHHHHHH-HhCCHHHHHHH
Confidence            45667788888874 6677777889999999999995 34578888888888877 456889988887 46999999999


Q ss_pred             Hhc--cChhHHHHHHHHHHHhhc
Q 015939          316 VMK--VGKTAREDAVVVIWSMCC  336 (398)
Q Consensus       316 l~~--~~~~~~~~a~~~L~~l~~  336 (398)
                      +++  .+.+++-..+..|+-...
T Consensus       185 lk~~~~~~~~r~K~~EFL~fyl~  207 (257)
T PF08045_consen  185 LKSKSTDRELRLKCIEFLYFYLM  207 (257)
T ss_pred             HccccccHHHhHHHHHHHHHHHc
Confidence            986  577788888888877554

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.90  E-value=0.039  Score=51.78  Aligned_cols=50  Identities=18%  Similarity=0.423  Sum_probs=35.7

Q ss_pred             cccccCccccCCCce----ecCCCcccchhHHHHHHhcC--CCCCCcccccCCCCC
Q 015939           13 LFRCPISLDVMKSPV----SLCTGVTYDRSSIQHWLESG--HDTCPATMQILSTKE   62 (398)
Q Consensus        13 ~~~Cpi~~~~~~dPv----~~~~g~~~~r~~i~~~~~~~--~~~CP~~~~~l~~~~   62 (398)
                      -..|.||-+.+-+--    +-.|||+|.-.|+.+||...  +++||+|+-.+....
T Consensus         4 ~A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r~   59 (465)
T KOG0827|consen    4 MAECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQERH   59 (465)
T ss_pred             cceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeeccccee
Confidence            456999976654321    33499999999999999742  368999985555443

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=93.72  E-value=3  Score=39.68  Aligned_cols=185  Identities=8%  Similarity=0.097  Sum_probs=123.7

Q ss_pred             chhHHHHHHHHHHHhhhhhhh-----hhhhhhc-CCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhh
Q 015939          101 ENSCVDYLVKVAKFATGCEAN-----RRFLASY-GGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLI  174 (398)
Q Consensus       101 ~~~~~~al~~L~~l~~~~~~~-----r~~i~~~-~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~i  174 (398)
                      .|.+..+......+.+.....     .+.+... |.++..|+.-.+. .+    ..-.+-..|........-    -+. 
T Consensus        90 fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~-~d----ial~~g~mlRec~k~e~l----~~~-  159 (335)
T PF08569_consen   90 FESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYEN-PD----IALNCGDMLRECIKHESL----AKI-  159 (335)
T ss_dssp             HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGS-TT----THHHHHHHHHHHTTSHHH----HHH-
T ss_pred             CcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcC-cc----ccchHHHHHHHHHhhHHH----HHH-
Confidence            346777776666666554333     3355554 5566666655554 22    224555666666654332    244 


Q ss_pred             hccCCChHHHHHHHhcCChhhHHHHHHHHHHh-hcCchhHH-Hhhc-hhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC
Q 015939          175 LNTYNCLPLFLEILREGNLDSKIGSIKILDSI-SLDNESKR-RVLE-TENLLSALFDYLKLAEDQALNDAILSILITLSV  251 (398)
Q Consensus       175 l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L-~~~~~~~~-~i~~-~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~  251 (398)
                      +-....+-.+.+.+..++.++...|..++..| ..+..... .+.. ...++.....+|.++ +--.++.++..|..|-.
T Consensus       160 iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~-NYvtkrqslkLL~elll  238 (335)
T PF08569_consen  160 ILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESS-NYVTKRQSLKLLGELLL  238 (335)
T ss_dssp             HHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-S-SHHHHHHHHHHHHHHHH
T ss_pred             HhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCC-CeEeehhhHHHHHHHHH
Confidence            44577888999999999999999999999965 55554333 3322 235677788899888 88899999999999998


Q ss_pred             CcchHHHHH----HcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHH
Q 015939          252 YRSVKAQLV----ELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEG  298 (398)
Q Consensus       252 ~~~~~~~~v----~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~  298 (398)
                      +..|...|.    +..-+..++.+|+  +.+..++-.|..+......+|..
T Consensus       239 dr~n~~vm~~yi~~~~nLkl~M~lL~--d~sk~Iq~eAFhvFKvFVANp~K  287 (335)
T PF08569_consen  239 DRSNFNVMTRYISSPENLKLMMNLLR--DKSKNIQFEAFHVFKVFVANPNK  287 (335)
T ss_dssp             SGGGHHHHHHHTT-HHHHHHHHHHTT---S-HHHHHHHHHHHHHHHH-SS-
T ss_pred             chhHHHHHHHHHCCHHHHHHHHHHhc--CcchhhhHHHHHHHHHHHhCCCC
Confidence            888766553    4556788888895  47888999999999998775543

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=93.68  E-value=0.46  Score=41.81  Aligned_cols=151  Identities=18%  Similarity=0.191  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhc--cCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCCh
Q 015939          104 CVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRK--RRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCL  181 (398)
Q Consensus       104 ~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~--~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i  181 (398)
                      ...|+..|+-++++ ++.+..+.++ .+.-.|-.+|..+  .....-.+-.++.++..+..+++..  ..+. +....++
T Consensus       117 vcnaL~lLQclaSh-Petk~~Fl~A-hiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~--vi~f-LltTeiv  191 (315)
T COG5209         117 VCNALNLLQCLASH-PETKKVFLDA-HIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQY--VIKF-LLTTEIV  191 (315)
T ss_pred             HHHHHHHHHHHhcC-cchheeeeec-ccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHH--HHHH-HHhhhHH
Confidence            45677777777766 8889998888 7666666777542  1111223457888898888876531  2233 5578999


Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhch-------hhHHHHHHHH-hccccCHHHHHHHHHHHHHhcCCc
Q 015939          182 PLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLET-------ENLLSALFDY-LKLAEDQALNDAILSILITLSVYR  253 (398)
Q Consensus       182 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~-------~g~i~~Lv~l-L~~~~~~~~~~~a~~aL~~Ls~~~  253 (398)
                      |.+++++..|+.-.+.-|+.++..+..++..-..+..+       ..++..++.- .+.+ +..+.+.++++-..||..+
T Consensus       192 PLcLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~-~~RLlKh~iRcYlRLsd~p  270 (315)
T COG5209         192 PLCLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLG-STRLLKHAIRCYLRLSDKP  270 (315)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHheeecCCH
Confidence            99999999999888999999999888877554444322       1233333332 2334 6778899999999998888


Q ss_pred             chHHHHH
Q 015939          254 SVKAQLV  260 (398)
Q Consensus       254 ~~~~~~v  260 (398)
                      ..|..+-
T Consensus       271 ~aR~lL~  277 (315)
T COG5209         271 HARALLS  277 (315)
T ss_pred             hHHHHHh
Confidence            7776553

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.56  E-value=0.9  Score=46.83  Aligned_cols=106  Identities=18%  Similarity=0.255  Sum_probs=74.7

Q ss_pred             CChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHH
Q 015939          179 NCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQ  258 (398)
Q Consensus       179 g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~  258 (398)
                      +++..++.=-.+.++.+|..|.+.+..+-.+     .+.  .-.+.+|.+.+++. ++-+++.++-...++  +..+...
T Consensus        86 ~avnt~~kD~~d~np~iR~lAlrtm~~l~v~-----~i~--ey~~~Pl~~~l~d~-~~yvRktaa~~vakl--~~~~~~~  155 (734)
T KOG1061|consen   86 LAVNTFLKDCEDPNPLIRALALRTMGCLRVD-----KIT--EYLCDPLLKCLKDD-DPYVRKTAAVCVAKL--FDIDPDL  155 (734)
T ss_pred             hhhhhhhccCCCCCHHHHHHHhhceeeEeeh-----HHH--HHHHHHHHHhccCC-ChhHHHHHHHHHHHh--hcCChhh
Confidence            3444444444455778887776666655543     121  34678999999998 787888777666664  3344455


Q ss_pred             HHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCH
Q 015939          259 LVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCS  296 (398)
Q Consensus       259 ~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~  296 (398)
                      ..+.|.++.|-.++.  ++++.|+.+|+.+|..+....
T Consensus       156 ~~~~gl~~~L~~ll~--D~~p~VVAnAlaaL~eI~e~~  191 (734)
T KOG1061|consen  156 VEDSGLVDALKDLLS--DSNPMVVANALAALSEIHESH  191 (734)
T ss_pred             ccccchhHHHHHHhc--CCCchHHHHHHHHHHHHHHhC
Confidence            568999999999995  578999999999999997633

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=93.48  E-value=5  Score=39.01  Aligned_cols=127  Identities=15%  Similarity=0.239  Sum_probs=88.5

Q ss_pred             CcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHh-cC---ChhhHHHHHHHHHH
Q 015939          130 GFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILR-EG---NLDSKIGSIKILDS  205 (398)
Q Consensus       130 g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~-~~---~~~~~~~a~~~L~~  205 (398)
                      .....|..+++....=...+...|+.++..+..+++..    -.++.+.|.++.+++.+. .+   +.++...--.+|..
T Consensus       106 ~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~----~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~A  181 (379)
T PF06025_consen  106 SLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTS----FSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSA  181 (379)
T ss_pred             hHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCch----hHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhH
Confidence            44555556665521113457788999999999888873    455889999999999998 55   56666667788999


Q ss_pred             hhcCchhHHHhhchhhHHHHHHHHhccccCH------HHHHHHHHHHHHhcCCcc-hHHHHHH
Q 015939          206 ISLDNESKRRVLETENLLSALFDYLKLAEDQ------ALNDAILSILITLSVYRS-VKAQLVE  261 (398)
Q Consensus       206 L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~------~~~~~a~~aL~~Ls~~~~-~~~~~v~  261 (398)
                      |+.+.+..+.+.+ .+.++.+++++.++...      +.....-..+-.|..+.. -|..+++
T Consensus       182 icLN~~Gl~~~~~-~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~~  243 (379)
T PF06025_consen  182 ICLNNRGLEKVKS-SNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDIID  243 (379)
T ss_pred             HhcCHHHHHHHHh-cChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHHH
Confidence            9999999999988 79999999998876222      222333344556666544 4444443

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=93.48  E-value=5.7  Score=37.82  Aligned_cols=162  Identities=15%  Similarity=0.204  Sum_probs=111.1

Q ss_pred             HHHHHHHHHcCCCCchhHHHHHHHHHHHhh-hhh-hhhhhhhhcCCcHHHHHHHhhhcc---CCc-------HHHHHHHH
Q 015939           87 VRVWIEKIKSENESENSCVDYLVKVAKFAT-GCE-ANRRFLASYGGFVEAVFGVLNRKR---RSE-------IAVLESAV  154 (398)
Q Consensus        87 i~~l~~~l~~~~~~~~~~~~al~~L~~l~~-~~~-~~r~~i~~~~g~v~~L~~lL~~~~---~~~-------~~~~~~al  154 (398)
                      ...+.+.|++....  ....++.-|..++. .+. ..++.+..-+-..+.+..++....   ...       ..++...+
T Consensus        58 ~k~lyr~L~~~~~~--~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI  135 (330)
T PF11707_consen   58 LKLLYRSLSSSKPS--LTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFI  135 (330)
T ss_pred             HHHHHHHhCcCcHH--HHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHH
Confidence            44455556655533  55678888888887 553 445556555334567777774321   110       14557778


Q ss_pred             HHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHH-HhhcCc----hhHHHhhchhhHHHHHHHH
Q 015939          155 RVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILD-SISLDN----ESKRRVLETENLLSALFDY  229 (398)
Q Consensus       155 ~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~-~L~~~~----~~~~~i~~~~g~i~~Lv~l  229 (398)
                      +.+..+....+.  ..++.++...+.+..+.+-|..++.++......+|. .+..++    ..|..+.. ...+..|+.+
T Consensus       136 ~F~Lsfl~~~~~--~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn-~~~L~~l~~L  212 (330)
T PF11707_consen  136 RFWLSFLSSGDP--ELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFN-EWTLSQLASL  212 (330)
T ss_pred             HHHHHHHccCCH--HHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcC-HHHHHHHHHH
Confidence            766555544332  357887888889999999999999999999888888 455553    56666777 7789999998


Q ss_pred             hccccCH----HHHHHHHHHHHHhcCCcc
Q 015939          230 LKLAEDQ----ALNDAILSILITLSVYRS  254 (398)
Q Consensus       230 L~~~~~~----~~~~~a~~aL~~Ls~~~~  254 (398)
                      .... ++    .+...+-..|..+|.++.
T Consensus       213 y~~~-~~~~~~~~~~~vh~fL~~lcT~p~  240 (330)
T PF11707_consen  213 YSRD-GEDEKSSVADLVHEFLLALCTDPK  240 (330)
T ss_pred             hccc-CCcccchHHHHHHHHHHHHhcCCC
Confidence            7766 55    788888889999986554

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=93.44  E-value=0.39  Score=36.83  Aligned_cols=69  Identities=17%  Similarity=0.140  Sum_probs=52.0

Q ss_pred             CCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHh
Q 015939          178 YNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITL  249 (398)
Q Consensus       178 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~L  249 (398)
                      ...++.++..+...+..+|..|+.+|.+++..-..... .....+++.|.+++.+. ++.++..| ..|-+|
T Consensus        26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l-~~f~~IF~~L~kl~~D~-d~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEIL-PYFNEIFDALCKLSADP-DENVRSAA-ELLDRL   94 (97)
T ss_pred             HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHcCC-chhHHHHH-HHHHHH
Confidence            34689999999999999999999999999977332222 22267899999999988 77665554 555544

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=93.40  E-value=0.26  Score=43.87  Aligned_cols=125  Identities=17%  Similarity=0.227  Sum_probs=84.4

Q ss_pred             hhHHHHHHHHHHhhcCc---hhHHHhhchhhHHHHHHHHhccc--------------cCHHHHHHHHHHHHHhcCCcchH
Q 015939          194 DSKIGSIKILDSISLDN---ESKRRVLETENLLSALFDYLKLA--------------EDQALNDAILSILITLSVYRSVK  256 (398)
Q Consensus       194 ~~~~~a~~~L~~L~~~~---~~~~~i~~~~g~i~~Lv~lL~~~--------------~~~~~~~~a~~aL~~Ls~~~~~~  256 (398)
                      ..|++|..+|.|++..-   ++-+.|.  .-+++.|+...-.+              ....-++-|+.+|..|+..+.|.
T Consensus        81 ~lREnalV~laNisgqLdLs~~~e~I~--~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~NV  158 (257)
T PF12031_consen   81 QLRENALVTLANISGQLDLSDYPESIA--RPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIENNV  158 (257)
T ss_pred             HHhhcceEeeeeeeeeeecccCchHHH--HHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheeccCc
Confidence            56788888888887652   2223332  12344444433211              11346899999999999988876


Q ss_pred             HHHHHcC-------ChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHH-HHHhhccCcHHHHHHHHhccCh
Q 015939          257 AQLVELG-------MVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGR-LALSEEASCAGRVVERVMKVGK  321 (398)
Q Consensus       257 ~~~v~~g-------~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~-~~i~~~~g~v~~Lv~~l~~~~~  321 (398)
                      .-+..-+       .+..|+++|. ...++-.+|-|+.+|.+|+..++.. ..+....++|..|+.++.....
T Consensus       159 DliLaTpp~sRlE~l~~~L~r~l~-~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~~  230 (257)
T PF12031_consen  159 DLILATPPFSRLERLFHTLVRLLG-MREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDAEQ  230 (257)
T ss_pred             ceeeeCCCHHHHHHHHHHHHHHhc-cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence            6655433       4556777775 3568889999999999999966544 3555567999999999986443

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.27  E-value=0.085  Score=49.48  Aligned_cols=63  Identities=21%  Similarity=0.258  Sum_probs=45.9

Q ss_pred             ccccCccccCC------CceecCCCcccchhHHHHHHhcCCCCCCcccccC--CCC---CCcccHHHHHHHHHH
Q 015939           14 FRCPISLDVMK------SPVSLCTGVTYDRSSIQHWLESGHDTCPATMQIL--STK---EFVPNLTLHRLIAHW   76 (398)
Q Consensus        14 ~~Cpi~~~~~~------dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l--~~~---~l~~n~~l~~~i~~~   76 (398)
                      +.|-||.+.++      -|-++.||||+|..|+.+....+.-.||.||++.  ...   .+..|.++-..+...
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~~~~~~~~~~l~kNf~ll~~~~~~   77 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETTEIPDGDVKSLQKNFALLQAIEHM   77 (296)
T ss_pred             CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcccCCchhHhhhhhhHHHHHHHHHH
Confidence            35777777665      4888999999999999988876666799999984  222   345566666666553

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.18  E-value=8.7  Score=40.07  Aligned_cols=246  Identities=16%  Similarity=0.103  Sum_probs=115.1

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHH--Hhh--Hhhhcc-
Q 015939          103 SCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKE--KLN--RLILNT-  177 (398)
Q Consensus       103 ~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~--~~~--~~il~~-  177 (398)
                      ...+|..++..+...   +-+.+.   -++..|--++++   +..-++..|.++|..++...+...  .|+  ...+.+ 
T Consensus       261 V~~EaArai~~l~~~---~~r~l~---pavs~Lq~flss---p~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~  331 (865)
T KOG1078|consen  261 VIYEAARAIVSLPNT---NSRELA---PAVSVLQLFLSS---PKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDS  331 (865)
T ss_pred             HHHHHHHHHhhcccc---CHhhcc---hHHHHHHHHhcC---cHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhccc
Confidence            445566666655433   222222   234455555555   234456899999988876443210  011  110111 


Q ss_pred             --CCChHHHHHHHhcCChhhHHHHHHHHHHhhcC--chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhc---
Q 015939          178 --YNCLPLFLEILREGNLDSKIGSIKILDSISLD--NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLS---  250 (398)
Q Consensus       178 --~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls---  250 (398)
                        .=.......+|+.|+.+...+-..-+.+...+  +++|..+++   ++..|...     -|.-..-.+..|.++-   
T Consensus       332 NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvd---ai~sLc~~-----fp~k~~~~m~FL~~~Lr~e  403 (865)
T KOG1078|consen  332 NRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVD---AIRSLCLK-----FPRKHTVMMNFLSNMLREE  403 (865)
T ss_pred             ccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHH---HHHHHHhh-----ccHHHHHHHHHHHHHHHhc
Confidence              12344555677777666665555555555444  444444322   23332222     1112222222333322   


Q ss_pred             CCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCH---HHHHHHh---hc--------cCcHHHHHHHH
Q 015939          251 VYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCS---EGRLALS---EE--------ASCAGRVVERV  316 (398)
Q Consensus       251 ~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~---~~~~~i~---~~--------~g~v~~Lv~~l  316 (398)
                      ..-+.+..++     +.++.++..   .+..++.++.-|+..-.+-   ..-..|.   ..        ...+..+.+.+
T Consensus       404 Gg~e~K~aiv-----d~Ii~iie~---~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir~iyNRv  475 (865)
T KOG1078|consen  404 GGFEFKRAIV-----DAIIDIIEE---NPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIRFIYNRV  475 (865)
T ss_pred             cCchHHHHHH-----HHHHHHHHh---CcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhHHHhhhh
Confidence            2223343332     234444421   2333343433333321111   1101110   01        11233344434


Q ss_pred             hccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          317 MKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       317 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      --.+..++..|+.+|.++....  +..     ...+...|-+.+... ++++|+.|...|+.+.+
T Consensus       476 iLEn~ivRaaAv~alaKfg~~~--~~l-----~~sI~vllkRc~~D~-DdevRdrAtf~l~~l~~  532 (865)
T KOG1078|consen  476 ILENAIVRAAAVSALAKFGAQD--VVL-----LPSILVLLKRCLNDS-DDEVRDRATFYLKNLEE  532 (865)
T ss_pred             hhhhhhhHHHHHHHHHHHhcCC--CCc-----cccHHHHHHHHhcCc-hHHHHHHHHHHHHHhhh
Confidence            3467888889999998888432  222     223344455555444 89999999999999985

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.15  E-value=0.057  Score=49.98  Aligned_cols=47  Identities=15%  Similarity=0.036  Sum_probs=39.5

Q ss_pred             CcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939           12 NLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILS   59 (398)
Q Consensus        12 ~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~   59 (398)
                      ++=+||||..---+-|..||||.-|..||.+++-. .+.|-.|+....
T Consensus       421 Ed~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN-~k~CFfCktTv~  467 (489)
T KOG4692|consen  421 EDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMN-CKRCFFCKTTVI  467 (489)
T ss_pred             ccccCcceecccchhhccCCCCchHHHHHHHHHhc-CCeeeEecceee
Confidence            56789999998889999999999999999999853 566888875543

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=93.11  E-value=7.9  Score=37.65  Aligned_cols=126  Identities=10%  Similarity=0.096  Sum_probs=89.2

Q ss_pred             CCChHHHHHHHhcC---ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhc-cc--cCHHHHHHHHHHHHHhcC
Q 015939          178 YNCLPLFLEILREG---NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLK-LA--EDQALNDAILSILITLSV  251 (398)
Q Consensus       178 ~g~i~~Lv~lL~~~---~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~-~~--~~~~~~~~a~~aL~~Ls~  251 (398)
                      ...+..|..++++.   ...+-..|+.++..+..++-..-.+....|.++.+++.+. .+  .+.++....-.+|..||-
T Consensus       105 s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicL  184 (379)
T PF06025_consen  105 SSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICL  184 (379)
T ss_pred             hhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhc
Confidence            56677777777765   5677788999999888775444444444899999999888 43  467888888899999999


Q ss_pred             CcchHHHHHHcCChHHHHHHhcccC-----cchhhHHHHHHHHHHHhC-CHHHHHHHh
Q 015939          252 YRSVKAQLVELGMVQILTRILSDSR-----TQILTVEKSIKMLSIVAT-CSEGRLALS  303 (398)
Q Consensus       252 ~~~~~~~~v~~g~v~~Lv~lL~~~~-----~~~~~~~~al~~L~~La~-~~~~~~~i~  303 (398)
                      +.+..+.+.+.+.++.+++++.++.     ...+....--..+..|.. +|.-|..++
T Consensus       185 N~~Gl~~~~~~~~l~~~f~if~s~~~~~~l~~~d~a~~lG~~~DEL~RH~p~Lk~~i~  242 (379)
T PF06025_consen  185 NNRGLEKVKSSNPLDKLFEIFTSPDYVKALRRRDTASNLGNSFDELMRHHPSLKPDII  242 (379)
T ss_pred             CHHHHHHHHhcChHHHHHHHhCCHHHHHHhcccchHHHHHHHHHHHHccCHHHHHHHH
Confidence            9999999999999999999995311     011222223334444555 555555555

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=93.08  E-value=5.6  Score=37.23  Aligned_cols=175  Identities=17%  Similarity=0.156  Sum_probs=109.6

Q ss_pred             cHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHH--H-------h
Q 015939          146 EIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKR--R-------V  216 (398)
Q Consensus       146 ~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~--~-------i  216 (398)
                      +..+++.|+++|...+.-+...         ....++.+...++.++.+++..|+.+|..+........  .       .
T Consensus        40 ~~~vR~~al~cLGl~~Lld~~~---------a~~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~  110 (298)
T PF12719_consen   40 DPAVRELALKCLGLCCLLDKEL---------AKEHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIFDSESDNDESV  110 (298)
T ss_pred             CHHHHHHHHHHHHHHHHhChHH---------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhccchhccCccc
Confidence            3467799999999888755431         12347888888888899999999999997765421111  1       1


Q ss_pred             hchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccC--cchhhHHHHHHHHHHHhC
Q 015939          217 LETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSR--TQILTVEKSIKMLSIVAT  294 (398)
Q Consensus       217 ~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~--~~~~~~~~al~~L~~La~  294 (398)
                      .. ...++.+.+.|.+. +++++..++..+..|--.+....   ....+..|+-+--++.  ++..++.--...+-..+.
T Consensus       111 ~~-~~l~~~l~~~l~~~-~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~Ffp~y~~  185 (298)
T PF12719_consen  111 DS-KSLLKILTKFLDSE-NPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLSVFFPVYAS  185 (298)
T ss_pred             hH-hHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHHHHHHHHHc
Confidence            12 45788888899888 88999999999999854432211   1223444444442222  234555555555666666


Q ss_pred             -CHHHHHHHhhccCcHHHHHHHHhccCh----hH---HHHHHHHHHHhhc
Q 015939          295 -CSEGRLALSEEASCAGRVVERVMKVGK----TA---REDAVVVIWSMCC  336 (398)
Q Consensus       295 -~~~~~~~i~~~~g~v~~Lv~~l~~~~~----~~---~~~a~~~L~~l~~  336 (398)
                       +++++..+.  .+.++.+-.+.....+    ..   -...+..+..++.
T Consensus       186 s~~~~Q~~l~--~~f~~~l~~~~~~~~~~~~~~~~v~~~~v~~~lv~lt~  233 (298)
T PF12719_consen  186 SSPENQERLA--EAFLPTLRTLSNAPDELDSPLAMVSPSQVASFLVDLTD  233 (298)
T ss_pred             CCHHHHHHHH--HHHHHHHHHHHhCcccccCchhhCCHHHHHHHHHHHCC
Confidence             445555555  3788888887765332    11   2355555656654

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=92.91  E-value=0.18  Score=29.57  Aligned_cols=29  Identities=21%  Similarity=0.237  Sum_probs=25.0

Q ss_pred             HHHHHHHHhccccCHHHHHHHHHHHHHhcC
Q 015939          222 LLSALFDYLKLAEDQALNDAILSILITLSV  251 (398)
Q Consensus       222 ~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~  251 (398)
                      .+|.++++++++ +++++.+|+.+|.+++.
T Consensus         1 llp~l~~~l~D~-~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    1 LLPILLQLLNDP-SPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHHT-S-SHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHcCCC-CHHHHHHHHHHHHHHHh
Confidence            478899999999 99999999999998864

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=92.84  E-value=2.2  Score=36.23  Aligned_cols=112  Identities=13%  Similarity=0.143  Sum_probs=76.1

Q ss_pred             CChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC----Ccc
Q 015939          179 NCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV----YRS  254 (398)
Q Consensus       179 g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~----~~~  254 (398)
                      ..+..+..+|++.+.+.|..++.++..+...............-+..|+.+|+..+++...+.++.+|..|-.    .++
T Consensus        25 ~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~  104 (165)
T PF08167_consen   25 KLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPT  104 (165)
T ss_pred             HHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCc
Confidence            3466788899999999999999999988876443333333344788999999998677788888888887743    334


Q ss_pred             hHHHHHH---cCChHHHHHHhcccCcchhhHHHHHHHHHHHhC
Q 015939          255 VKAQLVE---LGMVQILTRILSDSRTQILTVEKSIKMLSIVAT  294 (398)
Q Consensus       255 ~~~~~v~---~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~  294 (398)
                      ..+.+..   .+.++.++.+++    +....+.++.+|..+-.
T Consensus       105 l~Rei~tp~l~~~i~~ll~l~~----~~~~~~~~l~~L~~ll~  143 (165)
T PF08167_consen  105 LTREIATPNLPKFIQSLLQLLQ----DSSCPETALDALATLLP  143 (165)
T ss_pred             hHHHHhhccHHHHHHHHHHHHh----ccccHHHHHHHHHHHHH
Confidence            4444432   234445555553    25667777777777644

>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.78  E-value=0.042  Score=54.76  Aligned_cols=61  Identities=31%  Similarity=0.362  Sum_probs=40.7

Q ss_pred             CCCcccccCccccC----CCceecCCCcccchhHHHHHHhcCCCCCCccccc-----CCCCCCcccHHHHHHHH
Q 015939           10 VPNLFRCPISLDVM----KSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQI-----LSTKEFVPNLTLHRLIA   74 (398)
Q Consensus        10 ~~~~~~Cpi~~~~~----~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~-----l~~~~l~~n~~l~~~i~   74 (398)
                      ..+.++|+||...|    ..||.+-||||.|+.|.+....   .+|| |+..     .+.+....|+++-+.+.
T Consensus         8 w~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn---~scp-~~~De~~~~~~~~e~p~n~alL~~~~   77 (861)
T KOG3161|consen    8 WVLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN---ASCP-TKRDEDSSLMQLKEEPRNYALLRREH   77 (861)
T ss_pred             hHHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh---ccCC-CCccccchhcChhhcchhHHHHHhhc
Confidence            33456899997666    4799999999999999998864   4677 3221     22233445665544443

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=92.74  E-value=0.097  Score=37.58  Aligned_cols=45  Identities=24%  Similarity=0.487  Sum_probs=34.1

Q ss_pred             cccCccccCC----Cceec-CCCcccchhHHHHHHhcCCCCCCcccccCCC
Q 015939           15 RCPISLDVMK----SPVSL-CTGVTYDRSSIQHWLESGHDTCPATMQILST   60 (398)
Q Consensus        15 ~Cpi~~~~~~----dPv~~-~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~   60 (398)
                      +||-|.--|.    -||+. .|.|.|--.||.+|++. ...||.+++++.-
T Consensus        33 ~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~T-k~~CPld~q~w~~   82 (88)
T COG5194          33 TCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDT-KGVCPLDRQTWVL   82 (88)
T ss_pred             cCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhh-CCCCCCCCceeEE
Confidence            5777766442    25555 49999999999999986 6679999987653

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=92.73  E-value=0.2  Score=29.38  Aligned_cols=28  Identities=21%  Similarity=0.475  Sum_probs=25.0

Q ss_pred             hHHHHHHHhcCChhhHHHHHHHHHHhhc
Q 015939          181 LPLFLEILREGNLDSKIGSIKILDSISL  208 (398)
Q Consensus       181 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~  208 (398)
                      +|.+++++++.++++|..|+.+|..++.
T Consensus         2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~   29 (31)
T PF02985_consen    2 LPILLQLLNDPSPEVRQAAAECLGAIAE   29 (31)
T ss_dssp             HHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence            7889999999999999999999998875

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=92.57  E-value=13  Score=37.59  Aligned_cols=263  Identities=13%  Similarity=0.050  Sum_probs=148.9

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHh-hhcccc--hHHHhhHhhhccCC
Q 015939          103 SCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNL-IVNENG--VKEKLNRLILNTYN  179 (398)
Q Consensus       103 ~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~-l~~~~~--~~~~~~~~il~~~g  179 (398)
                      .+.+++..+.+.|.. ......+.....++-.++.--.+ ...+..++-.|+.+|.+ +-.-..  ..|.+|.+      
T Consensus       150 ~k~~sl~~~gy~ces-~~Pe~li~~sN~il~aiv~ga~k-~et~~avRLaaL~aL~dsl~fv~~nf~~E~erNy------  221 (858)
T COG5215         150 GKCESLGICGYHCES-EAPEDLIQMSNVILFAIVMGALK-NETTSAVRLAALKALMDSLMFVQGNFCYEEERNY------  221 (858)
T ss_pred             hHHHHHHHHHHHhhc-cCHHHHHHHhhHHHHHHHHhhcc-cCchHHHHHHHHHHHHHHHHHHHHhhcchhhhch------
Confidence            467788888887743 22234444441233333322222 23345566788888876 222111  11223333      


Q ss_pred             ChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCc-c---
Q 015939          180 CLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYR-S---  254 (398)
Q Consensus       180 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~---  254 (398)
                      .+...++.-+..+.+++..|-.+|..+..- -..-....+ .-....+.+.+++. +.++...+...-..+|... +   
T Consensus       222 ~mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE-~aL~alt~~~mks~-nd~va~qavEfWsticeEeid~~~  299 (858)
T COG5215         222 FMQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYME-NALAALTGRFMKSQ-NDEVAIQAVEFWSTICEEEIDGEM  299 (858)
T ss_pred             hheeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhcCc-chHHHHHHHHHHHHHHHHHhhhHH
Confidence            355556666777889999998898877654 333334443 33444455677887 6667666666554444211 0   


Q ss_pred             -------------hHHHHHHcCChHHHHHHhcccCc-----chhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHH
Q 015939          255 -------------VKAQLVELGMVQILTRILSDSRT-----QILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERV  316 (398)
Q Consensus       255 -------------~~~~~v~~g~v~~Lv~lL~~~~~-----~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l  316 (398)
                                   +-....-++++|.|+.+|....+     +-.+...|..+|...+..  ....|++ + ++.-+=.-+
T Consensus       300 e~~~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~--~gd~i~~-p-Vl~FvEqni  375 (858)
T COG5215         300 EDKYLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQL--KGDKIMR-P-VLGFVEQNI  375 (858)
T ss_pred             HHhhcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHH--hhhHhHH-H-HHHHHHHhc
Confidence                         00111124578999999953222     224555555555544431  1123331 1 111111223


Q ss_pred             hccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhcC
Q 015939          317 MKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGKA  382 (398)
Q Consensus       317 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~~  382 (398)
                      ...+-.-++.|+.++..+... ++..+...++.. ++|.+...+... .-.+|..+++++..++++
T Consensus       376 ~~~~w~nreaavmAfGSvm~g-p~~~~lT~~V~q-alp~i~n~m~D~-~l~vk~ttAwc~g~iad~  438 (858)
T COG5215         376 RSESWANREAAVMAFGSVMHG-PCEDCLTKIVPQ-ALPGIENEMSDS-CLWVKSTTAWCFGAIADH  438 (858)
T ss_pred             cCchhhhHHHHHHHhhhhhcC-ccHHHHHhhHHh-hhHHHHHhcccc-eeehhhHHHHHHHHHHHH
Confidence            446777789999999998865 445555555544 677788887744 578999999999999983

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=92.56  E-value=0.99  Score=39.77  Aligned_cols=177  Identities=14%  Similarity=0.165  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccc----cCHHHHHHHHHHHHHhcCCcc--hHHHHHHcCChHHHH
Q 015939          196 KIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLA----EDQALNDAILSILITLSVYRS--VKAQLVELGMVQILT  269 (398)
Q Consensus       196 ~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~----~~~~~~~~a~~aL~~Ls~~~~--~~~~~v~~g~v~~Lv  269 (398)
                      ..+|..+|..++++++.|..+.+ ..+--.|..+|...    .-.-++-.++.++..|..+++  ....+..-.+||.++
T Consensus       117 vcnaL~lLQclaShPetk~~Fl~-AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL  195 (315)
T COG5209         117 VCNALNLLQCLASHPETKKVFLD-AHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL  195 (315)
T ss_pred             HHHHHHHHHHHhcCcchheeeee-cccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence            45788889999999999998887 44333344444322    223467789999999998764  444456888999999


Q ss_pred             HHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhc-------cCcHHHHHHHHh-ccChhHHHHHHHHHHHhhccCCCh
Q 015939          270 RILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEE-------ASCAGRVVERVM-KVGKTAREDAVVVIWSMCCVYKDA  341 (398)
Q Consensus       270 ~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~-------~g~v~~Lv~~l~-~~~~~~~~~a~~~L~~l~~~~~~~  341 (398)
                      +++.  .+++-.+-.|.-++..+-.++.|-+.+...       ...+..++.-+. .++...-++++++-..++..   +
T Consensus       196 rIme--~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~---p  270 (315)
T COG5209         196 RIME--LGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDK---P  270 (315)
T ss_pred             HHHH--hhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCC---H
Confidence            9994  356666777888888888888777665422       122333333332 37788889999999998864   4


Q ss_pred             hHHHHHH---hcCCHHHHHH-HHhhcCcHHHHHHHHHHHHHHh
Q 015939          342 RVKEAVV---NSNGLTKLLL-VMQSENEGIVRKMCGDLVKVLG  380 (398)
Q Consensus       342 ~~~~~~~---~~g~~~~Ll~-~l~~~~~~~~k~~A~~lL~~l~  380 (398)
                      +.+..+-   -.|....-.. ++.++  ...|++-+.++-.++
T Consensus       271 ~aR~lL~~~lP~~Lrd~tfs~vl~dD--~~sk~ClAqll~~ln  311 (315)
T COG5209         271 HARALLSSKLPDGLRDDTFSLVLADD--GGSKECLAQLLTFLN  311 (315)
T ss_pred             hHHHHHhccCCccccccHHHHHHHhc--CChHHHHHHHHHHHH
Confidence            5554432   2444333322 33333  234455455544443

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=92.45  E-value=1.1  Score=48.45  Aligned_cols=140  Identities=12%  Similarity=0.126  Sum_probs=105.8

Q ss_pred             HHHHHHHHhccc---cCHHHHHHHHHHHHHhcC-CcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CH
Q 015939          222 LLSALFDYLKLA---EDQALNDAILSILITLSV-YRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CS  296 (398)
Q Consensus       222 ~i~~Lv~lL~~~---~~~~~~~~a~~aL~~Ls~-~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~  296 (398)
                      +.|.++.+.+++   .+|+.+.+|.-+|+.+.. ..+.+..     ..|.|+.+|. .++++.++-++...|.-|+- .|
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~fces-----~l~llftime-ksp~p~IRsN~VvalgDlav~fp  993 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEFCES-----HLPLLFTIME-KSPSPRIRSNLVVALGDLAVRFP  993 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHHHHH-----HHHHHHHHHh-cCCCceeeecchheccchhhhcc
Confidence            567777787665   579999999999999853 4444432     6799999996 36789999999999988876 33


Q ss_pred             HHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHH
Q 015939          297 EGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLV  376 (398)
Q Consensus       297 ~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL  376 (398)
                      .-.+..      -+.|...+.+.++.+++.|+.+|..|-..       .++---|.+..+...|..+ +++++..|....
T Consensus       994 nlie~~------T~~Ly~rL~D~~~~vRkta~lvlshLILn-------dmiKVKGql~eMA~cl~D~-~~~IsdlAk~FF 1059 (1251)
T KOG0414|consen  994 NLIEPW------TEHLYRRLRDESPSVRKTALLVLSHLILN-------DMIKVKGQLSEMALCLEDP-NAEISDLAKSFF 1059 (1251)
T ss_pred             cccchh------hHHHHHHhcCccHHHHHHHHHHHHHHHHh-------hhhHhcccHHHHHHHhcCC-cHHHHHHHHHHH
Confidence            333333      34577778889999999999999998863       1334468888888888766 899999999666


Q ss_pred             HHHhc
Q 015939          377 KVLGK  381 (398)
Q Consensus       377 ~~l~~  381 (398)
                      +.|+.
T Consensus      1060 ~Els~ 1064 (1251)
T KOG0414|consen 1060 KELSS 1064 (1251)
T ss_pred             HHhhh
Confidence            66665

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=92.13  E-value=11  Score=38.69  Aligned_cols=173  Identities=11%  Similarity=0.169  Sum_probs=97.5

Q ss_pred             HHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHH
Q 015939          150 LESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDY  229 (398)
Q Consensus       150 ~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~l  229 (398)
                      +.-|+.+|+.+..+.....-.... ......+..++..+. +++.-+.-++++|.|+..++..+..+.....-+...+--
T Consensus       561 ~fPalDilRl~v~h~~~~s~~~~~-~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~s~~~~i~~~~~~  638 (745)
T KOG0301|consen  561 MFPALDILRLAVKHHSSNSLFCDR-EEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFMSRLESILDPVIE  638 (745)
T ss_pred             hhhHHHHHHHHHhccchhhhhhhh-hhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHHHHHHHHhhhhhh
Confidence            456677776666554432110010 012234555555555 556777889999999999987777766532222222222


Q ss_pred             hccccCHHHHHHHHHHHHHhcC--CcchHHHHHHcCChHHHHHHhc---ccCcchhhHHHHHHHHHHHhCCHHHHHHHhh
Q 015939          230 LKLAEDQALNDAILSILITLSV--YRSVKAQLVELGMVQILTRILS---DSRTQILTVEKSIKMLSIVATCSEGRLALSE  304 (398)
Q Consensus       230 L~~~~~~~~~~~a~~aL~~Ls~--~~~~~~~~v~~g~v~~Lv~lL~---~~~~~~~~~~~al~~L~~La~~~~~~~~i~~  304 (398)
                      .+...+..++.+.+....|++.  ..++-    +.|+.+.+..+++   ++..|-+..-..+.+|.+|+..+....++..
T Consensus       639 ~~s~~~knl~ia~atlaln~sv~l~~~~~----~~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~~~~A~  714 (745)
T KOG0301|consen  639 ASSLSNKNLQIALATLALNYSVLLIQDNE----QLEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASVIQLAK  714 (745)
T ss_pred             hhcccchhHHHHHHHHHHHHHHHHHhccc----ccchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHHHHHHH
Confidence            2333345566666666666643  22221    1455555555543   2233445667889999999998888888774


Q ss_pred             ccCcHHHHHHHHhc-cChhHHHHHHH
Q 015939          305 EASCAGRVVERVMK-VGKTAREDAVV  329 (398)
Q Consensus       305 ~~g~v~~Lv~~l~~-~~~~~~~~a~~  329 (398)
                      . -.|..+++.++. .+....+..++
T Consensus       715 ~-~~v~sia~~~~~~~~~~~~k~~a~  739 (745)
T KOG0301|consen  715 N-RSVDSIAKKLKEAVSNPSGKNIAR  739 (745)
T ss_pred             h-cCHHHHHHHHHHhccCchhhHHHH
Confidence            3 567888887775 34333333333

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=92.13  E-value=10  Score=41.51  Aligned_cols=255  Identities=11%  Similarity=0.059  Sum_probs=136.2

Q ss_pred             hHHHHHHHHHHHhhh-hhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCCh
Q 015939          103 SCVDYLVKVAKFATG-CEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCL  181 (398)
Q Consensus       103 ~~~~al~~L~~l~~~-~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i  181 (398)
                      .+.+|+.-|+.++.. +++++     .+-++|-++.++.+   +..+++-.|+.+|..+...-.+-+.+-.. +--.-.+
T Consensus       439 tK~~ALeLl~~lS~~i~de~~-----LDRVlPY~v~l~~D---s~a~Vra~Al~Tlt~~L~~Vr~~~~~dan-iF~eYlf  509 (1431)
T KOG1240|consen  439 TKLAALELLQELSTYIDDEVK-----LDRVLPYFVHLLMD---SEADVRATALETLTELLALVRDIPPSDAN-IFPEYLF  509 (1431)
T ss_pred             hHHHHHHHHHHHhhhcchHHH-----HhhhHHHHHHHhcC---chHHHHHHHHHHHHHHHhhccCCCcccch-hhHhhhh
Confidence            577888888888754 22222     12568888999887   34566788888887766543322111122 2233467


Q ss_pred             HHHHHHHhcC-ChhhHHHHHHHHHHhhcC-------------------chh--HH------HhhchhhHHHH-HHHHhcc
Q 015939          182 PLFLEILREG-NLDSKIGSIKILDSISLD-------------------NES--KR------RVLETENLLSA-LFDYLKL  232 (398)
Q Consensus       182 ~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~-------------------~~~--~~------~i~~~~g~i~~-Lv~lL~~  232 (398)
                      |.|-.++.+. ...+|..=|..|..|+..                   +++  ..      ...+....+.. .+.+|.+
T Consensus       510 P~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd  589 (1431)
T KOG1240|consen  510 PHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSD  589 (1431)
T ss_pred             hhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcC
Confidence            8888888763 444444333333333321                   111  00      00000112223 3345555


Q ss_pred             ccCHHHHHHHHHHHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHH
Q 015939          233 AEDQALNDAILSILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGR  311 (398)
Q Consensus       233 ~~~~~~~~~a~~aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~  311 (398)
                      . ++-++++-+..|.-||..- ..+   ..-=.++.|+..|.  +.|..++..-...+.-++..- +.+.+  +++.+|.
T Consensus       590 ~-~~~Vkr~Lle~i~~LC~FFGk~k---sND~iLshLiTfLN--DkDw~LR~aFfdsI~gvsi~V-G~rs~--seyllPL  660 (1431)
T KOG1240|consen  590 S-PPIVKRALLESIIPLCVFFGKEK---SNDVILSHLITFLN--DKDWRLRGAFFDSIVGVSIFV-GWRSV--SEYLLPL  660 (1431)
T ss_pred             C-chHHHHHHHHHHHHHHHHhhhcc---cccchHHHHHHHhc--CccHHHHHHHHhhccceEEEE-eeeeH--HHHHHHH
Confidence            5 6677888788877776421 000   01114567777773  345555544443333333211 11111  2356788


Q ss_pred             HHHHHhccChhHHHHHHHHHHHhhccCC-ChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          312 VVERVMKVGKTAREDAVVVIWSMCCVYK-DARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       312 Lv~~l~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      |..-|.++.+-+-..|+.+|..|+..+- ....+..++ ..+.|-|+     ..+..+|..+..++-...+
T Consensus       661 l~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v~~i~-~~v~PlL~-----hPN~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  661 LQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAVKDIL-QDVLPLLC-----HPNLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             HHHhccCcchhhHHHHHHHHHHHHHhcccchHHHHHHH-Hhhhhhee-----CchHHHHHHHHHHHHHHHh
Confidence            8888888888888888888888887531 011122222 22333332     4477888888777665554

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.11  E-value=4.8  Score=43.41  Aligned_cols=259  Identities=14%  Similarity=0.101  Sum_probs=149.9

Q ss_pred             HHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHH
Q 015939          109 VKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEIL  188 (398)
Q Consensus       109 ~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL  188 (398)
                      ..|..+.+.+.+|...+.++ .++..++.++-+  +.   -+...++++..|...++.        -++..-+-.+++.|
T Consensus       664 DcLisllKnnteNqklFrea-nGvklilpflin--de---hRSslLrivscLitvdpk--------qvhhqelmalVdtL  729 (2799)
T KOG1788|consen  664 DCLISLLKNNTENQKLFREA-NGVKLILPFLIN--DE---HRSSLLRIVSCLITVDPK--------QVHHQELMALVDTL  729 (2799)
T ss_pred             HHHHHHHhccchhhHHHHhh-cCceEEEEeeec--hH---HHHHHHHHHHHHhccCcc--------cccHHHHHHHHHHH
Confidence            45667888889999999998 777777766643  11   123445555555544442        11334566788888


Q ss_pred             hcCC------------hhhHHHHHHHHHHhhc-CchhHHHhhchhhHHHHHHHHhccc---------cCHHHHHHHHHHH
Q 015939          189 REGN------------LDSKIGSIKILDSISL-DNESKRRVLETENLLSALFDYLKLA---------EDQALNDAILSIL  246 (398)
Q Consensus       189 ~~~~------------~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~lL~~~---------~~~~~~~~a~~aL  246 (398)
                      ++|-            .+.......+++.+-. +...+..+++ .+++..|..+|..-         .|.-.--.-...|
T Consensus       730 ksgmvt~IsgeqyklhfsllcdlmGalwrivgvngsaqrvFge-atGFslLlttLhtfqgftelhdesDlcvyiklfkil  808 (2799)
T KOG1788|consen  730 KSGMVTRISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGE-ATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKIL  808 (2799)
T ss_pred             HhcceeccchhHHHHHHHHHHHHHHHHHHHHccCchheeehhc-cccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHH
Confidence            8752            1233344455665543 3456666777 77777777776521         1111111222223


Q ss_pred             HHh-----cCCcchHHHHHHcCChHHHHHHhcccC-----cch----hhHH---------------HHHHHHHHHhC---
Q 015939          247 ITL-----SVYRSVKAQLVELGMVQILTRILSDSR-----TQI----LTVE---------------KSIKMLSIVAT---  294 (398)
Q Consensus       247 ~~L-----s~~~~~~~~~v~~g~v~~Lv~lL~~~~-----~~~----~~~~---------------~al~~L~~La~---  294 (398)
                      ..+     +.+..|+.++-..=.-+.+.++|+...     .+.    .+.+               .|+..+-.+-.   
T Consensus       809 FrlfTlavcenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednif  888 (2799)
T KOG1788|consen  809 FRLFTLAVCENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIF  888 (2799)
T ss_pred             HHHHHHHHhhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhccccee
Confidence            322     345556655432222233333332100     000    0111               22222222211   


Q ss_pred             --------CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHh--hcC
Q 015939          295 --------CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQ--SEN  364 (398)
Q Consensus       295 --------~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~--~~~  364 (398)
                              ....++.|. .+|++..++..+....++.|-.-+..|..++..+  +...+..-..|.++.|+..+-  ..+
T Consensus       889 avntPsGqfnpdk~~iy-nagavRvlirslLlnypK~qlefl~lleSlaRas--pfnaelltS~gcvellleIiypflsg  965 (2799)
T KOG1788|consen  889 AVNTPSGQFNPDKQKIY-NAGAVRVLIRSLLLNYPKLQLEFLNLLESLARAS--PFNAELLTSAGCVELLLEIIYPFLSG  965 (2799)
T ss_pred             eeccCCCCcCchHhhhc-ccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcC--CCchhhhhcccHHHHHHHHhhhhhcC
Confidence                    112355667 5799999999999999999999999999999875  567777777899998887772  233


Q ss_pred             cHHHHHHHHHHHHHHhcCCCC
Q 015939          365 EGIVRKMCGDLVKVLGKASGL  385 (398)
Q Consensus       365 ~~~~k~~A~~lL~~l~~~~~~  385 (398)
                      +...--.|.+++.+|.-|.-.
T Consensus       966 sspfLshalkIvemLgayrls  986 (2799)
T KOG1788|consen  966 SSPFLSHALKIVEMLGAYRLS  986 (2799)
T ss_pred             CchHhhccHHHHHHHhhccCC
Confidence            566777888888888776433

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.02  E-value=8.5  Score=40.62  Aligned_cols=213  Identities=8%  Similarity=0.051  Sum_probs=125.1

Q ss_pred             HHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHH
Q 015939          149 VLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFD  228 (398)
Q Consensus       149 ~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~  228 (398)
                      +...++..|..+...-.     +...+...+++....+.|.+.+..+--+|...+..|+..       -. ...+|-|..
T Consensus       743 ik~~gL~~l~~l~e~r~-----~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~-e~il~dL~e  809 (982)
T KOG4653|consen  743 IKGYGLQMLRHLIEKRK-----KATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YP-EDILPDLSE  809 (982)
T ss_pred             chHHHHHHHHHHHHhcc-----hhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cc-hhhHHHHHH
Confidence            33555555655554221     122244567777777888777777777777766666554       11 345666666


Q ss_pred             -Hhccc--cCHHHHHHHHHHHHHhcCC-cchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHH--HHHHH
Q 015939          229 -YLKLA--EDQALNDAILSILITLSVY-RSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSE--GRLAL  302 (398)
Q Consensus       229 -lL~~~--~~~~~~~~a~~aL~~Ls~~-~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~--~~~~i  302 (398)
                       ..+..  ..++.+--.-.+++++... .+-...-.+ -.+...+..++  +++...+..+++.|++|+.-..  +-..+
T Consensus       810 ~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~-~Li~tfl~gvr--epd~~~RaSS~a~lg~Lcq~~a~~vsd~~  886 (982)
T KOG4653|consen  810 EYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA-VLINTFLSGVR--EPDHEFRASSLANLGQLCQLLAFQVSDFF  886 (982)
T ss_pred             HHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH-HHHHHHHHhcC--CchHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence             33322  1123343444666666432 222222111 24566666665  3577778999999999987332  12233


Q ss_pred             hhccCcHHHHHHHHhc-cChhHHHHHHHHHHHhhccCCChhHHHHH--HhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHH
Q 015939          303 SEEASCAGRVVERVMK-VGKTAREDAVVVIWSMCCVYKDARVKEAV--VNSNGLTKLLLVMQSENEGIVRKMCGDLVKVL  379 (398)
Q Consensus       303 ~~~~g~v~~Lv~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~--~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l  379 (398)
                      .   .++..++.+.+. ++.-+++.|+-++..+-...+ ++..+..  ..-.....+...+..+.++.+|-.|...+..+
T Consensus       887 ~---ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg-~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~leei  962 (982)
T KOG4653|consen  887 H---EVLQLILSLETTDGSVLVRRAAVHLLAELLNGTG-EDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCLEEI  962 (982)
T ss_pred             H---HHHHHHHHHHccCCchhhHHHHHHHHHHHHhccc-hhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            2   355666666654 788899999999988776543 3333322  23455666777777777788888887766655


Q ss_pred             hc
Q 015939          380 GK  381 (398)
Q Consensus       380 ~~  381 (398)
                      -.
T Consensus       963 ~a  964 (982)
T KOG4653|consen  963 QA  964 (982)
T ss_pred             HH
Confidence            44

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=92.00  E-value=3.5  Score=45.92  Aligned_cols=233  Identities=15%  Similarity=0.170  Sum_probs=131.3

Q ss_pred             CCcccchhHHHHHHhcCCCCCCcccccCC-CCCCcccHHH--HHHHHHHHhhCCCCHHHHHHHHHHHHcCC-----CCch
Q 015939           31 TGVTYDRSSIQHWLESGHDTCPATMQILS-TKEFVPNLTL--HRLIAHWSHQLTVPEQEVRVWIEKIKSEN-----ESEN  102 (398)
Q Consensus        31 ~g~~~~r~~i~~~~~~~~~~CP~~~~~l~-~~~l~~n~~l--~~~i~~~~~~~p~p~~~i~~l~~~l~~~~-----~~~~  102 (398)
                      ++..+|+.+|.+|+..-.   -.+...+. ..+.-.|..-  ..-+..|.+.++....+...++..++...     ....
T Consensus       712 ~~v~~~~fyi~~w~~d~~---le~~~~~~~~kd~~s~~~~~~~~~~el~~~~v~~~~n~~K~~~~~Ik~~~~~~~~~~~~  788 (1692)
T KOG1020|consen  712 SEVYACHFYIAQWYRDTR---LETILIMEENKDVDSNEGTHHWFSFELAYEKVITVENELKYILSKIKDKEKSGRGPKLN  788 (1692)
T ss_pred             hhHHHhhHHHHhHHHHHH---HHHHHHHHhccCccccccchhHHHHHHHHHHHhhhHHHHHHHHHHhcchhhhccCcCCC
Confidence            566788999999953200   00000000 0122222211  12223444455544445666666664331     0000


Q ss_pred             hH---HHHHHH-HHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccC
Q 015939          103 SC---VDYLVK-VAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTY  178 (398)
Q Consensus       103 ~~---~~al~~-L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~  178 (398)
                      ..   ....+. ...++    .+|.+....++.+..++.+|.. +  .+.++..|+++|..+..-++.       |+...
T Consensus       789 s~~~d~~~a~li~~~la----~~r~f~~sfD~yLk~Il~~l~e-~--~ialRtkAlKclS~ive~Dp~-------vL~~~  854 (1692)
T KOG1020|consen  789 SRFADDDDAKLIVFYLA----HARSFSQSFDPYLKLILSVLGE-N--AIALRTKALKCLSMIVEADPS-------VLSRP  854 (1692)
T ss_pred             CccccchhHHHHHHHHH----hhhHHHHhhHHHHHHHHHHhcC-c--hHHHHHHHHHHHHHHHhcChH-------hhcCH
Confidence            11   122222 22333    2455666555677888888886 3  355779999999999876553       24455


Q ss_pred             CChHHHHHHHhcCChhhHHHHHHHHHHh-hcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHH
Q 015939          179 NCLPLFLEILREGNLDSKIGSIKILDSI-SLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKA  257 (398)
Q Consensus       179 g~i~~Lv~lL~~~~~~~~~~a~~~L~~L-~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~  257 (398)
                      .+-..+-.-+...+..+|+.|+.+++.. ...++.-.+.      ...+..-..+. +..+++.+++.|..+|...++-.
T Consensus       855 dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~qy------Y~~i~erIlDt-gvsVRKRvIKIlrdic~e~pdf~  927 (1692)
T KOG1020|consen  855 DVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQY------YDQIIERILDT-GVSVRKRVIKILRDICEETPDFS  927 (1692)
T ss_pred             HHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHHH------HHHHHhhcCCC-chhHHHHHHHHHHHHHHhCCChh
Confidence            5566666666677889999999999944 4445444433      22334333444 57899999999999996554433


Q ss_pred             HHHHcCChHHHHHHhcccCcchh-hHHHHHHHHHHH
Q 015939          258 QLVELGMVQILTRILSDSRTQIL-TVEKSIKMLSIV  292 (398)
Q Consensus       258 ~~v~~g~v~~Lv~lL~~~~~~~~-~~~~al~~L~~L  292 (398)
                      .+     +...+++|+.-+++++ +++.+..++..+
T Consensus       928 ~i-----~~~cakmlrRv~DEEg~I~kLv~etf~kl  958 (1692)
T KOG1020|consen  928 KI-----VDMCAKMLRRVNDEEGNIKKLVRETFLKL  958 (1692)
T ss_pred             hH-----HHHHHHHHHHhccchhHHHHHHHHHHHHH
Confidence            33     3445566653333444 777777777776

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=91.92  E-value=0.062  Score=38.21  Aligned_cols=47  Identities=19%  Similarity=0.292  Sum_probs=34.0

Q ss_pred             cccccCccccCCC-ceecC-CCcccchhHHHHHHhc--CCCCCCcccccCC
Q 015939           13 LFRCPISLDVMKS-PVSLC-TGVTYDRSSIQHWLES--GHDTCPATMQILS   59 (398)
Q Consensus        13 ~~~Cpi~~~~~~d-Pv~~~-~g~~~~r~~i~~~~~~--~~~~CP~~~~~l~   59 (398)
                      +-.||-|+-.=.| |.++- |.|.|-+.||.+|+..  ....||-||+.++
T Consensus        31 dg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~   81 (84)
T KOG1493|consen   31 DGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ   81 (84)
T ss_pred             CCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence            3456666554444 66664 9999999999999863  2357999998764

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=91.89  E-value=7.7  Score=40.82  Aligned_cols=144  Identities=11%  Similarity=0.113  Sum_probs=90.1

Q ss_pred             CChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhh-------chh-----hHHHHHHHHhccccCHHHHHHHHHH
Q 015939          179 NCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVL-------ETE-----NLLSALFDYLKLAEDQALNDAILSI  245 (398)
Q Consensus       179 g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~-------~~~-----g~i~~Lv~lL~~~~~~~~~~~a~~a  245 (398)
                      .+++.++..+..|+. .......++.+++.. .+.|..+-       +..     =++..+.+=|+++ ++..+..|+++
T Consensus        38 dAmK~iIa~M~~G~d-mssLf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lLavNti~kDl~d~-N~~iR~~AlR~  115 (757)
T COG5096          38 DAMKKIIAQMSLGED-MSSLFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALLAVNTIQKDLQDP-NEEIRGFALRT  115 (757)
T ss_pred             HHHHHHHHHHhcCCC-hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhhccCC-CHHHHHHHHHH
Confidence            567777777777754 555566667766543 34443321       100     1222333334455 77788888887


Q ss_pred             HHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHH
Q 015939          246 LITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTARE  325 (398)
Q Consensus       246 L~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~  325 (398)
                      |..+=...     +.. .+++++.+++  .++++.|++.|.-++..+=.-+   ..+....|.+..+..++.+.+|.+..
T Consensus       116 ls~l~~~e-----l~~-~~~~~ik~~l--~d~~ayVRk~Aalav~kly~ld---~~l~~~~g~~~~l~~l~~D~dP~Vi~  184 (757)
T COG5096         116 LSLLRVKE-----LLG-NIIDPIKKLL--TDPHAYVRKTAALAVAKLYRLD---KDLYHELGLIDILKELVADSDPIVIA  184 (757)
T ss_pred             HHhcChHH-----HHH-HHHHHHHHHc--cCCcHHHHHHHHHHHHHHHhcC---HhhhhcccHHHHHHHHhhCCCchHHH
Confidence            77653221     111 2677888888  4477888888888877775422   23333567888888888888888888


Q ss_pred             HHHHHHHHhh
Q 015939          326 DAVVVIWSMC  335 (398)
Q Consensus       326 ~a~~~L~~l~  335 (398)
                      +|+..|..+.
T Consensus       185 nAl~sl~~i~  194 (757)
T COG5096         185 NALASLAEID  194 (757)
T ss_pred             HHHHHHHHhc
Confidence            8888887766

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.85  E-value=11  Score=42.19  Aligned_cols=263  Identities=12%  Similarity=0.065  Sum_probs=141.6

Q ss_pred             CCchhHHHHHHHHHHHhhhh-hhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhc-
Q 015939           99 ESENSCVDYLVKVAKFATGC-EANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILN-  176 (398)
Q Consensus        99 ~~~~~~~~al~~L~~l~~~~-~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~-  176 (398)
                      ..|..+.-|+.-+..+++.. ++.+..+.+   .||.|.++   ..|++..+ ..|..-+.+....+..     .. +. 
T Consensus       969 A~wnSk~GaAfGf~~i~~~a~~kl~p~l~k---LIPrLyRY---~yDP~~~V-q~aM~sIW~~Li~D~k-----~~-vd~ 1035 (1702)
T KOG0915|consen  969 ATWNSKKGAAFGFGAIAKQAGEKLEPYLKK---LIPRLYRY---QYDPDKKV-QDAMTSIWNALITDSK-----KV-VDE 1035 (1702)
T ss_pred             chhhcccchhhchHHHHHHHHHhhhhHHHH---hhHHHhhh---ccCCcHHH-HHHHHHHHHHhccChH-----HH-HHH
Confidence            33556666666666665442 233334432   25555444   24566554 4566666665544431     11 11 


Q ss_pred             -cCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHH---HHHHHHhcC-
Q 015939          177 -TYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAI---LSILITLSV-  251 (398)
Q Consensus       177 -~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a---~~aL~~Ls~-  251 (398)
                       -..++.-|+.-|.+....+|+.+|.+|..|....+.-...-.-...+..+++...+= ...++++|   +.+|..|+. 
T Consensus      1036 y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDI-KEsVR~aa~~~~~~lsKl~vr 1114 (1702)
T KOG0915|consen 1036 YLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDI-KESVREAADKAARALSKLCVR 1114 (1702)
T ss_pred             HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhh
Confidence             235677777777777889999999999999988555444433356777888887664 34455554   445555532 


Q ss_pred             --Cc--chHHHHHHcCChHHHHH--HhcccCcchhhHHHHHHHHHHHhCCHHH-HHHHhhccCcHHHHHHHHhccCh---
Q 015939          252 --YR--SVKAQLVELGMVQILTR--ILSDSRTQILTVEKSIKMLSIVATCSEG-RLALSEEASCAGRVVERVMKVGK---  321 (398)
Q Consensus       252 --~~--~~~~~~v~~g~v~~Lv~--lL~~~~~~~~~~~~al~~L~~La~~~~~-~~~i~~~~g~v~~Lv~~l~~~~~---  321 (398)
                        +.  ..+.+-+-..++|.|++  ++   +.-++++..+++++.-|+.+... .....  +-.||.|.+....-.+   
T Consensus      1115 ~~d~~~~~~~~~~l~~iLPfLl~~gim---s~v~evr~~si~tl~dl~Kssg~~lkP~~--~~LIp~ll~~~s~lE~~vL 1189 (1702)
T KOG0915|consen 1115 ICDVTNGAKGKEALDIILPFLLDEGIM---SKVNEVRRFSIGTLMDLAKSSGKELKPHF--PKLIPLLLNAYSELEPQVL 1189 (1702)
T ss_pred             hcccCCcccHHHHHHHHHHHHhccCcc---cchHHHHHHHHHHHHHHHHhchhhhcchh--hHHHHHHHHHccccchHHH
Confidence              11  11222222235566653  33   34678999999999999984432 11111  2355555555443222   


Q ss_pred             --------hHHHHHHHHHHH-hhccCCChhHHHHHHh-------cCCHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Q 015939          322 --------TAREDAVVVIWS-MCCVYKDARVKEAVVN-------SNGLTKLLLVMQSENEGIVRKMCGDLVKVLG  380 (398)
Q Consensus       322 --------~~~~~a~~~L~~-l~~~~~~~~~~~~~~~-------~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~  380 (398)
                              ....+|+..+.. .++.++--+.....++       ...+|.+..+++++-+-..|--++..+-.|.
T Consensus      1190 nYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~ 1264 (1702)
T KOG0915|consen 1190 NYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLV 1264 (1702)
T ss_pred             HHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHH
Confidence                    222334443322 3333321122222221       4467888888877655566666655444443

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=91.55  E-value=12  Score=35.03  Aligned_cols=221  Identities=11%  Similarity=0.064  Sum_probs=128.9

Q ss_pred             HHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHH
Q 015939          106 DYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFL  185 (398)
Q Consensus       106 ~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv  185 (398)
                      -|+..+..+.-. ++.|..+-...-.-..++.+++. .-...+++-+.+-++..+..+..-.+-..+    --..|..|+
T Consensus       168 fav~cl~~l~~~-~e~R~i~waentcs~r~~e~l~n-~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K----~~dli~dli  241 (432)
T COG5231         168 FAVSCLSNLEFD-VEKRKIEWAENTCSRRFMEILQN-YVGVKQLQYNSLIIIWILTFSKECAQDIDK----MDDLINDLI  241 (432)
T ss_pred             HHHHHHhhhhhh-HHHHHHHHHHhhHHHHHHHHHHh-hhhhhhhHHHHHHHHHHHhcCHHHHHHHHH----HHHHHHHHH
Confidence            344555555433 55665433332456677788877 445567788899888888876543211111    125677788


Q ss_pred             HHHhcC-ChhhHHHHHHHHHHhhcC-c-hhHHHhhchhhHHHHHHHHhccc--cCHHHHHHHHHH---------------
Q 015939          186 EILREG-NLDSKIGSIKILDSISLD-N-ESKRRVLETENLLSALFDYLKLA--EDQALNDAILSI---------------  245 (398)
Q Consensus       186 ~lL~~~-~~~~~~~a~~~L~~L~~~-~-~~~~~i~~~~g~i~~Lv~lL~~~--~~~~~~~~a~~a---------------  245 (398)
                      .+.+.. ...+-.-++.++.++... + ..-....- .|-+.+-+.+|...  +|.+.+...-..               
T Consensus       242 ~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~ll-l~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~~fD  320 (432)
T COG5231         242 AIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLL-LNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLCIFD  320 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHh-hcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence            888766 334445566677777652 1 22222222 34355556666543  344433322111               


Q ss_pred             --HHHh-------cC-------CcchHHHHH--HcCChHHHHHHhcccCcchhhHHHHHHHHHHHh-CCHHHHHHHhhcc
Q 015939          246 --LITL-------SV-------YRSVKAQLV--ELGMVQILTRILSDSRTQILTVEKSIKMLSIVA-TCSEGRLALSEEA  306 (398)
Q Consensus       246 --L~~L-------s~-------~~~~~~~~v--~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La-~~~~~~~~i~~~~  306 (398)
                        +..|       +.       ..+|...+.  ....+..|..+++...++. ....|+.=+..+. ..|+++.-+.. -
T Consensus       321 ~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt-~i~vAc~Di~~~Vr~~PE~~~vl~K-y  398 (432)
T COG5231         321 NYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNT-WICVACSDIFQLVRASPEINAVLSK-Y  398 (432)
T ss_pred             HHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCc-eEeeeHhhHHHHHHhCchHHHHHHH-h
Confidence              1111       00       012333333  2346888999997433332 3445555555554 48899888874 5


Q ss_pred             CcHHHHHHHHhccChhHHHHHHHHHHHhh
Q 015939          307 SCAGRVVERVMKVGKTAREDAVVVIWSMC  335 (398)
Q Consensus       307 g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~  335 (398)
                      |+=..+.+++..+++.++-+|+.++..+.
T Consensus       399 g~k~~im~L~nh~d~~VkfeAl~a~q~~i  427 (432)
T COG5231         399 GVKEIIMNLINHDDDDVKFEALQALQTCI  427 (432)
T ss_pred             hhHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence            99999999999999999999999987654

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.47  E-value=1.2  Score=45.24  Aligned_cols=115  Identities=16%  Similarity=0.151  Sum_probs=83.8

Q ss_pred             hhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHH
Q 015939          125 LASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILD  204 (398)
Q Consensus       125 i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~  204 (398)
                      ++.. |+.-+++.=|++   .-.+++.+|+..+..|+.+.++.         ....+..|+++++....++|..|..+|.
T Consensus       369 iI~s-GACGA~VhGlED---Ef~EVR~AAV~Sl~~La~ssP~F---------A~~aldfLvDMfNDE~~~VRL~ai~aL~  435 (823)
T KOG2259|consen  369 IIPS-GACGALVHGLED---EFYEVRRAAVASLCSLATSSPGF---------AVRALDFLVDMFNDEIEVVRLKAIFALT  435 (823)
T ss_pred             cccc-cccceeeeechH---HHHHHHHHHHHHHHHHHcCCCCc---------HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            4445 666666666655   33567899999999999877763         1245889999999999999999999999


Q ss_pred             HhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHH
Q 015939          205 SISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQL  259 (398)
Q Consensus       205 ~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~  259 (398)
                      .++.+    ..|.  ..-++.+.+.|.+. +++++++.-..|.+.-..+-++..|
T Consensus       436 ~Is~~----l~i~--eeql~~il~~L~D~-s~dvRe~l~elL~~~~~~d~~~i~m  483 (823)
T KOG2259|consen  436 MISVH----LAIR--EEQLRQILESLEDR-SVDVREALRELLKNARVSDLECIDM  483 (823)
T ss_pred             HHHHH----heec--HHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCcHHHHHH
Confidence            99987    2222  34577778888887 7887777766666655555555555

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=91.44  E-value=0.13  Score=48.23  Aligned_cols=47  Identities=23%  Similarity=0.205  Sum_probs=36.4

Q ss_pred             cCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccC
Q 015939            8 IAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQIL   58 (398)
Q Consensus         8 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l   58 (398)
                      .+.|..-.|-||.+-.++-+-+||||+.|  |+.-..  ..+.||+|++..
T Consensus       300 ~~~~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~cs~--~l~~CPvCR~rI  346 (355)
T KOG1571|consen  300 RELPQPDLCVVCLDEPKSAVFVPCGHVCC--CTLCSK--HLPQCPVCRQRI  346 (355)
T ss_pred             cccCCCCceEEecCCccceeeecCCcEEE--chHHHh--hCCCCchhHHHH
Confidence            45566668999999999999999999988  544332  356699998753

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=91.25  E-value=5  Score=36.85  Aligned_cols=193  Identities=12%  Similarity=0.067  Sum_probs=115.4

Q ss_pred             hHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhH-HHHHHHHhccc---cCHHHHHHHHHHHHHhcCCcchH
Q 015939          181 LPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENL-LSALFDYLKLA---EDQALNDAILSILITLSVYRSVK  256 (398)
Q Consensus       181 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~-i~~Lv~lL~~~---~~~~~~~~a~~aL~~Ls~~~~~~  256 (398)
                      +..+..++..=+.+.+--+..+++.++.++.....+....+. ...+..++...   ..+..+--+++++.|+-.+...+
T Consensus        65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~  144 (268)
T PF08324_consen   65 LILLLKILLSWPPESRFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGR  144 (268)
T ss_dssp             HHHHHHHHCCS-CCC-HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCH
T ss_pred             HHHHHHHHHhCCCccchhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccH
Confidence            344445555555666777888898888886665555442322 44455554433   35677888999999998888888


Q ss_pred             HHHHHc-C-ChHHHHHHhcccC--cchhhHHHHHHHHHHHhCCHHHHHHHh-hccCcHHHHHHHHhc--cChhHHHHHHH
Q 015939          257 AQLVEL-G-MVQILTRILSDSR--TQILTVEKSIKMLSIVATCSEGRLALS-EEASCAGRVVERVMK--VGKTAREDAVV  329 (398)
Q Consensus       257 ~~~v~~-g-~v~~Lv~lL~~~~--~~~~~~~~al~~L~~La~~~~~~~~i~-~~~g~v~~Lv~~l~~--~~~~~~~~a~~  329 (398)
                      ..+.+. + .+...+..+....  .+..++..+..++.|++..-.....-. .....+..+++.+..  .++++.-.++.
T Consensus       145 ~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~Lv  224 (268)
T PF08324_consen  145 QLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLLV  224 (268)
T ss_dssp             HHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHH
T ss_pred             HHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence            887743 3 3333433332111  156777788888889876221111000 001234455553332  68888899999


Q ss_pred             HHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHH
Q 015939          330 VIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDL  375 (398)
Q Consensus       330 ~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~l  375 (398)
                      +|.++....  ..........|+-..+-...+.+..+++++.+..+
T Consensus       225 AlGtL~~~~--~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v~~ei  268 (268)
T PF08324_consen  225 ALGTLLSSS--DSAKQLAKSLDVKSVLSKKANKSKEPRIKEVAAEI  268 (268)
T ss_dssp             HHHHHHCCS--HHHHHHCCCCTHHHHHHHHHHHTTSHHHHHHHHHH
T ss_pred             HHHHHhccC--hhHHHHHHHcChHHHHHHHHhcccchHHHHHhccC
Confidence            999999542  33444333356666655555566678898887654

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.08  E-value=15  Score=36.47  Aligned_cols=163  Identities=15%  Similarity=0.064  Sum_probs=91.9

Q ss_pred             CcHHHHHHHh-hhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcC-ChhhHHHHHHHHHHhh
Q 015939          130 GFVEAVFGVL-NRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREG-NLDSKIGSIKILDSIS  207 (398)
Q Consensus       130 g~v~~L~~lL-~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~  207 (398)
                      |....++..+ .+..+++......|++.|.+.+...++.  .+++   ..-.+..++.-|..+ +.++...+..+|..+.
T Consensus       254 ~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~k--v~th---~~~~ldaii~gL~D~~~~~V~leam~~Lt~v~  328 (533)
T KOG2032|consen  254 GLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDK--VRTH---KTTQLDAIIRGLYDDLNEEVQLEAMKCLTMVL  328 (533)
T ss_pred             ccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHH--HHHh---HHHHHHHHHHHHhcCCccHHHHHHHHHHHHHH
Confidence            4444444333 3335666677899999999999874441  1222   233455555555544 7888888888888776


Q ss_pred             cCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC--CcchHHHHHH--cCChHHHHHHhcccCcchhhHH
Q 015939          208 LDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV--YRSVKAQLVE--LGMVQILTRILSDSRTQILTVE  283 (398)
Q Consensus       208 ~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~--~~~~~~~~v~--~g~v~~Lv~lL~~~~~~~~~~~  283 (398)
                      ..-.++....---.+.-.+..+..+. +++.+.++..+...|+.  +...+.-+++  .+...+++-.|++  +.+. ..
T Consensus       329 ~~~~~~~l~~~~l~ialrlR~l~~se-~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d--~~p~-va  404 (533)
T KOG2032|consen  329 EKASNDDLESYLLNIALRLRTLFDSE-DDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQD--PNPY-VA  404 (533)
T ss_pred             HhhhhcchhhhchhHHHHHHHHHHhc-ChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCC--CChH-HH
Confidence            55333333211123344555666676 88899999998888864  3333333332  2233344444432  3343 33


Q ss_pred             HHHHHHHHHhCCHHHHHH
Q 015939          284 KSIKMLSIVATCSEGRLA  301 (398)
Q Consensus       284 ~al~~L~~La~~~~~~~~  301 (398)
                      .|+......+.-.-.+++
T Consensus       405 ~ACr~~~~~c~p~l~rke  422 (533)
T KOG2032|consen  405 RACRSELRTCYPNLVRKE  422 (533)
T ss_pred             HHHHHHHHhcCchhHHHH
Confidence            556665555554444443

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=90.93  E-value=0.26  Score=39.36  Aligned_cols=51  Identities=14%  Similarity=0.244  Sum_probs=42.3

Q ss_pred             CcccccCccccCCCceecC----CCcccchhHHHHHHh--cCCCCCCcccccCCCCC
Q 015939           12 NLFRCPISLDVMKSPVSLC----TGVTYDRSSIQHWLE--SGHDTCPATMQILSTKE   62 (398)
Q Consensus        12 ~~~~Cpi~~~~~~dPv~~~----~g~~~~r~~i~~~~~--~~~~~CP~~~~~l~~~~   62 (398)
                      .-+.|-||++.-.|+--++    ||.+.|-.|-..-|+  .-++.||+|+..++...
T Consensus        79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~  135 (140)
T PF05290_consen   79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS  135 (140)
T ss_pred             CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence            4567999999999998885    999999999999775  33678999998887543

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=90.81  E-value=1.3  Score=31.83  Aligned_cols=67  Identities=12%  Similarity=0.087  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcC
Q 015939          196 KIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELG  263 (398)
Q Consensus       196 ~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g  263 (398)
                      .+.|.+++.+++..+..-..+-+ .++++.++++..+.+...++..+.-+|.-++...+....+-+.|
T Consensus         4 lKaaLWaighIgss~~G~~lL~~-~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDE-SDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhh-cCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence            45789999999998777777765 79999999999877678889999999999999988888777665

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=90.80  E-value=9.1  Score=37.75  Aligned_cols=185  Identities=11%  Similarity=0.105  Sum_probs=113.6

Q ss_pred             ChHHHHHHHhcC-ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHh-ccc---cCHHHHHHHHHHHHHhcC-Cc
Q 015939          180 CLPLFLEILREG-NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYL-KLA---EDQALNDAILSILITLSV-YR  253 (398)
Q Consensus       180 ~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL-~~~---~~~~~~~~a~~aL~~Ls~-~~  253 (398)
                      .+..++.+..+. +...+..++.++..|..--.....+   ...+..+..-+ ...   ..+...+...|....|.. ++
T Consensus       190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~l---~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~  266 (415)
T PF12460_consen  190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDDL---DEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGH  266 (415)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhhH---HHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCC
Confidence            455555555444 5666667777777666441111111   23444444444 111   133445555566666653 33


Q ss_pred             chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCC-HHH-------------HHHHhhccCcHHHHHHHHhcc
Q 015939          254 SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATC-SEG-------------RLALSEEASCAGRVVERVMKV  319 (398)
Q Consensus       254 ~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~-~~~-------------~~~i~~~~g~v~~Lv~~l~~~  319 (398)
                      ..-..     .+..|++++.    ++++-..+...+.-|... ++.             |+.+..  -.+|.|++..+..
T Consensus       267 ~~~~~-----~~~~L~~lL~----~~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~--~~~p~L~~~~~~~  335 (415)
T PF12460_consen  267 PLATE-----LLDKLLELLS----SPELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFT--QVLPKLLEGFKEA  335 (415)
T ss_pred             chHHH-----HHHHHHHHhC----ChhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHH--HHHHHHHHHHhhc
Confidence            22222     4566888884    367777788888887775 333             445542  4788888888887


Q ss_pred             ChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          320 GKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       320 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      ++..+.+-+.+|..+-.+-+  ...-.---...+|-|++.|... +..++..+...|+.+-+
T Consensus       336 ~~~~k~~yL~ALs~ll~~vP--~~vl~~~l~~LlPLLlqsL~~~-~~~v~~s~L~tL~~~l~  394 (415)
T PF12460_consen  336 DDEIKSNYLTALSHLLKNVP--KSVLLPELPTLLPLLLQSLSLP-DADVLLSSLETLKMILE  394 (415)
T ss_pred             ChhhHHHHHHHHHHHHhhCC--HHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHH
Confidence            77789999999999888654  3222222244888899999776 67889999888887765

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=90.75  E-value=18  Score=35.72  Aligned_cols=111  Identities=11%  Similarity=0.040  Sum_probs=74.4

Q ss_pred             hHHHHHHHHhccccCHHHHHHHHHHHHHhcCC-cc--------h-----HHHHHHcCChHHHHHHhcccCcchhhHHHHH
Q 015939          221 NLLSALFDYLKLAEDQALNDAILSILITLSVY-RS--------V-----KAQLVELGMVQILTRILSDSRTQILTVEKSI  286 (398)
Q Consensus       221 g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~--------~-----~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al  286 (398)
                      ..+..|+.+|.++   +....+++++.-|..+ ++        +     |+++... .+|.|++-...  .+.+.+...+
T Consensus       271 ~~~~~L~~lL~~~---~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~-~~p~L~~~~~~--~~~~~k~~yL  344 (415)
T PF12460_consen  271 ELLDKLLELLSSP---ELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQ-VLPKLLEGFKE--ADDEIKSNYL  344 (415)
T ss_pred             HHHHHHHHHhCCh---hhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHH-HHHHHHHHHhh--cChhhHHHHH
Confidence            3566778888774   5677778888777655 21        2     3344333 67777777743  4455788888


Q ss_pred             HHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccC
Q 015939          287 KMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVY  338 (398)
Q Consensus       287 ~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~  338 (398)
                      .+|..+.. .|...-. -+-+..+|.|++.|.-.+..++..++.+|..+....
T Consensus       345 ~ALs~ll~~vP~~vl~-~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  345 TALSHLLKNVPKSVLL-PELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHHHHHHhhCCHHHHH-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            88888876 3322211 111357888888888888899999999999988753

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.72  E-value=12  Score=38.93  Aligned_cols=145  Identities=12%  Similarity=0.154  Sum_probs=85.0

Q ss_pred             CCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhcc--ccCHHHHHHHHHHHHHhcCCcch
Q 015939          178 YNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKL--AEDQALNDAILSILITLSVYRSV  255 (398)
Q Consensus       178 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~--~~~~~~~~~a~~aL~~Ls~~~~~  255 (398)
                      .|.+--++.+|++.+.+++..+..+...|....+.-+.+ .  =.-..+.+--..  ..+.+-++.-+++|...+..-..
T Consensus       316 ~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrNvediv-~--~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~  392 (948)
T KOG1058|consen  316 QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRNVEDIV-Q--FLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPE  392 (948)
T ss_pred             HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhccHHHHH-H--HHHHHHHhccccccccchHHHHHHHHHHHHHhhcChH
Confidence            355556677788889999999888888777653322211 1  001111111111  12334577788888887764432


Q ss_pred             HHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHH-hCCHHHHHHHhhccCcHHHHHHHHhc-cChhHHHHHHHHHHH
Q 015939          256 KAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIV-ATCSEGRLALSEEASCAGRVVERVMK-VGKTAREDAVVVIWS  333 (398)
Q Consensus       256 ~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~L-a~~~~~~~~i~~~~g~v~~Lv~~l~~-~~~~~~~~a~~~L~~  333 (398)
                          +.+.+|+.|++.+++  .++...-..+..++.. -..|.-|..+.+      .++.-+.. .+.+.-+-|++++..
T Consensus       393 ----~aatvV~~ll~fisD--~N~~aas~vl~FvrE~iek~p~Lr~~ii~------~l~~~~~~irS~ki~rgalwi~Ge  460 (948)
T KOG1058|consen  393 ----VAATVVSLLLDFISD--SNEAAASDVLMFVREAIEKFPNLRASIIE------KLLETFPQIRSSKICRGALWILGE  460 (948)
T ss_pred             ----HHHHHHHHHHHHhcc--CCHHHHHHHHHHHHHHHHhCchHHHHHHH------HHHHhhhhhcccccchhHHHHHHH
Confidence                334578999999953  4555444444444443 235555555543      35554443 677888888888888


Q ss_pred             hhcc
Q 015939          334 MCCV  337 (398)
Q Consensus       334 l~~~  337 (398)
                      -|-.
T Consensus       461 Yce~  464 (948)
T KOG1058|consen  461 YCEG  464 (948)
T ss_pred             HHhh
Confidence            7754

>PRK14707 hypothetical protein; Provisional

Probab=90.51  E-value=42  Score=39.48  Aligned_cols=238  Identities=11%  Similarity=0.039  Sum_probs=140.1

Q ss_pred             HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939           84 EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE  163 (398)
Q Consensus        84 ~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~  163 (398)
                      ++.+..++.-|+.... .+.+..|...|..-...++..|..+-.  -.|.-.++-|+.+++.  .....|...|..-...
T Consensus       792 pQ~vAn~LNALSKWPe-~~~Cr~AA~~LA~rLa~dp~Lr~af~A--Q~VANaLNALSKWPd~--~~Cr~AA~aLA~RLa~  866 (2710)
T PRK14707        792 PREMTNALNALSKWPD-TPACAAAASALAARVADDPRLREAFDV--QHVATVLNAMSKWPDN--AVCAAAAGAMAERLAD  866 (2710)
T ss_pred             HHHHHHHHHHhhcCCC-chHHHHHHHHHHHHHhcChhHHHhcCH--HHHHHHHHHhccCCCc--hHHHHHHHHHHHHHhc
Confidence            3456666666666544 246777888887655565666666543  4577778888775543  3456666666544333


Q ss_pred             cchHHHhhHhhhccCCChHHHHHHHhcC--ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhcccc-CHHHHH
Q 015939          164 NGVKEKLNRLILNTYNCLPLFLEILREG--NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAE-DQALND  240 (398)
Q Consensus       164 ~~~~~~~~~~il~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~~  240 (398)
                      +..   .+.. + +...+.-.++-|+.=  ....+..|..+-..|..+++.+..+.  ...|.-.+.-|+.-. .+..+.
T Consensus       867 e~~---LR~a-L-~~QevantLNALSKWPd~~~C~~AA~aLA~rL~~d~~Lrqal~--aQ~VAN~LNALSKWPd~~~Cr~  939 (2710)
T PRK14707        867 EPE---LRHT-L-TAHGVVIVLNALSKWPNVPVCAAAASALAERLADEPELRKALS--AHRVATALNALSKWPDIPVCAT  939 (2710)
T ss_pred             Chh---hhhc-c-chHHHHHHHhhhccCCCcHHHHHHHHHHHHHHhcCHHHHhhcc--HHHHHHHHhhhccCCCchHHHH
Confidence            332   1222 2 333344444445422  44445444444447777777777764  456677777777653 444555


Q ss_pred             HHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhc--
Q 015939          241 AILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMK--  318 (398)
Q Consensus       241 ~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~--  318 (398)
                      ++......|....+-+..|- .-.+...+.-|+..++.+.....+..+-..|...+..|+.+-  +-.+...++.|.+  
T Consensus       940 Aa~aLA~rLa~d~~Lr~Aln-~Q~lsNtLNALSKWPd~~~c~~AA~aLA~rL~~~~~LR~al~--aQ~vAN~LNALSKWP 1016 (2710)
T PRK14707        940 AASALAERLSDDPDLREALD-ASNLPQVLNALSKWPDVPAGGEVVDALAERLVDEPALRNALD--PIGMANALNALSKWL 1016 (2710)
T ss_pred             HHHHHHHHhccChhhhhhcc-HHHHHHHHhhhccCCCchHHHHHHHHHHHHHhccHHHHhhcc--hHHHHHHHhhhhcCC
Confidence            55555556666666655443 335666666776555555555555555566888888887764  4567777777776  


Q ss_pred             cChhHHHHHHHHHHHhhc
Q 015939          319 VGKTAREDAVVVIWSMCC  336 (398)
Q Consensus       319 ~~~~~~~~a~~~L~~l~~  336 (398)
                      ..+..++.|..+-..|..
T Consensus      1017 d~~~Cr~AA~~LA~rLa~ 1034 (2710)
T PRK14707       1017 QMPVCAATVEALAARLSN 1034 (2710)
T ss_pred             CchHHHHHHHHHHHHhcc
Confidence            345555555555555543

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=90.45  E-value=4.5  Score=44.14  Aligned_cols=228  Identities=15%  Similarity=0.100  Sum_probs=129.4

Q ss_pred             HHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC--
Q 015939          132 VEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD--  209 (398)
Q Consensus       132 v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--  209 (398)
                      ++.+.+.++.-...  +...+|+..|..++..-++.  ++     -..++|-++.++.....++|..|..+|..+...  
T Consensus       424 vs~lts~IR~lk~~--~tK~~ALeLl~~lS~~i~de--~~-----LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr  494 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTI--QTKLAALELLQELSTYIDDE--VK-----LDRVLPYFVHLLMDSEADVRATALETLTELLALVR  494 (1431)
T ss_pred             HHHHHHHHHhhhcc--hhHHHHHHHHHHHhhhcchH--HH-----HhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhcc
Confidence            55555665542222  23478999999888765541  12     246899999999999999999999998855322  


Q ss_pred             --chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC------------------CcchH------------H
Q 015939          210 --NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV------------------YRSVK------------A  257 (398)
Q Consensus       210 --~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~------------------~~~~~------------~  257 (398)
                        +..-..|.- .=.+|.|-+++.+....-++-+-+..|..|+.                  ++.|-            .
T Consensus       495 ~~~~~daniF~-eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~  573 (1431)
T KOG1240|consen  495 DIPPSDANIFP-EYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQ  573 (1431)
T ss_pred             CCCcccchhhH-hhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHH
Confidence              333344444 45888899998874122233333333333321                  11111            1


Q ss_pred             HHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhcc
Q 015939          258 QLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCV  337 (398)
Q Consensus       258 ~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~  337 (398)
                      ++. .++=.....+|.+  +++-|++.-+..|.-||. =-+|+.-  +.=.++.|+.+|.+.+...+-.-..-+.-++.+
T Consensus       574 ~L~-~~V~~~v~sLlsd--~~~~Vkr~Lle~i~~LC~-FFGk~ks--ND~iLshLiTfLNDkDw~LR~aFfdsI~gvsi~  647 (1431)
T KOG1240|consen  574 ALH-HTVEQMVSSLLSD--SPPIVKRALLESIIPLCV-FFGKEKS--NDVILSHLITFLNDKDWRLRGAFFDSIVGVSIF  647 (1431)
T ss_pred             HHH-HHHHHHHHHHHcC--CchHHHHHHHHHHHHHHH-Hhhhccc--ccchHHHHHHHhcCccHHHHHHHHhhccceEEE
Confidence            110 1122233445532  344555555555555554 1111111  113467788888877666665555555444443


Q ss_pred             CCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          338 YKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       338 ~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      -+     ..-+.++.+|-|.+-|..+ .+-+-.+|...|..|-+
T Consensus       648 VG-----~rs~seyllPLl~Q~ltD~-EE~Viv~aL~~ls~Lik  685 (1431)
T KOG1240|consen  648 VG-----WRSVSEYLLPLLQQGLTDG-EEAVIVSALGSLSILIK  685 (1431)
T ss_pred             Ee-----eeeHHHHHHHHHHHhccCc-chhhHHHHHHHHHHHHH
Confidence            22     1113466777777777655 77888899888888877

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.39  E-value=4.8  Score=42.37  Aligned_cols=187  Identities=15%  Similarity=0.128  Sum_probs=112.3

Q ss_pred             hHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHH
Q 015939          181 LPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLV  260 (398)
Q Consensus       181 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v  260 (398)
                      ....+..+++.-+.+|..+...|+.+....+.+..+.. .+++...++.|++. |+=+--+|...+..||.-       .
T Consensus       729 ~qeai~sl~d~qvpik~~gL~~l~~l~e~r~~~~~~~~-ekvl~i~ld~Lkde-dsyvyLnaI~gv~~Lcev-------y  799 (982)
T KOG4653|consen  729 LQEAISSLHDDQVPIKGYGLQMLRHLIEKRKKATLIQG-EKVLAIALDTLKDE-DSYVYLNAIRGVVSLCEV-------Y  799 (982)
T ss_pred             HHHHHHHhcCCcccchHHHHHHHHHHHHhcchhhhhhH-HHHHHHHHHHhccc-CceeeHHHHHHHHHHHHh-------c
Confidence            55566667777788999999999999987666666666 78999999999998 665666777766666632       2


Q ss_pred             HcCChHHHHH-HhcccCcc-hhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhcc
Q 015939          261 ELGMVQILTR-ILSDSRTQ-ILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCV  337 (398)
Q Consensus       261 ~~g~v~~Lv~-lL~~~~~~-~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~  337 (398)
                      ....+|-|.+ ..+..... ++.+-+.-.++.++.. ..+-.....+  -.+......+++++..-+..+++.|.++|.-
T Consensus       800 ~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~--~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~  877 (982)
T KOG4653|consen  800 PEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKA--VLINTFLSGVREPDHEFRASSLANLGQLCQL  877 (982)
T ss_pred             chhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHH--HHHHHHHHhcCCchHHHHHhHHHHHHHHHHH
Confidence            2335566665 33211100 1111111122233221 1222222221  1223333334445555588888889888864


Q ss_pred             CCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          338 YKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       338 ~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      .. ......+  ..++..++.+.+++++.-.|+.|..++..+-.
T Consensus       878 ~a-~~vsd~~--~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~  918 (982)
T KOG4653|consen  878 LA-FQVSDFF--HEVLQLILSLETTDGSVLVRRAAVHLLAELLN  918 (982)
T ss_pred             Hh-hhhhHHH--HHHHHHHHHHHccCCchhhHHHHHHHHHHHHh
Confidence            31 1122222  33577788888889899999999988877655

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=90.22  E-value=0.24  Score=45.68  Aligned_cols=48  Identities=15%  Similarity=0.275  Sum_probs=35.5

Q ss_pred             cccCccccCC----CceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCC
Q 015939           15 RCPISLDVMK----SPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKE   62 (398)
Q Consensus        15 ~Cpi~~~~~~----dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~   62 (398)
                      .||+|-+.|.    +-.--+||+..||-|.......-+..||.||....+..
T Consensus        16 ~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~den   67 (480)
T COG5175          16 YCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDEN   67 (480)
T ss_pred             cCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccc
Confidence            4999999884    33335699999999966654433567999998877654

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.19  E-value=27  Score=36.75  Aligned_cols=208  Identities=14%  Similarity=0.126  Sum_probs=132.7

Q ss_pred             HHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHH
Q 015939           89 VWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKE  168 (398)
Q Consensus        89 ~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~  168 (398)
                      .|...|.|..++  .+.+|.+.|-.+...+....       ...|.+|.-..+ .+  .++..-.---|...+..+++  
T Consensus        39 dL~~lLdSnkd~--~KleAmKRIia~iA~G~dvS-------~~Fp~VVKNVas-kn--~EVKkLVyvYLlrYAEeqpd--  104 (968)
T KOG1060|consen   39 DLKQLLDSNKDS--LKLEAMKRIIALIAKGKDVS-------LLFPAVVKNVAS-KN--IEVKKLVYVYLLRYAEEQPD--  104 (968)
T ss_pred             HHHHHHhccccH--HHHHHHHHHHHHHhcCCcHH-------HHHHHHHHHhhc-cC--HHHHHHHHHHHHHHhhcCCC--
Confidence            466777777665  78899988877665544433       345556777766 33  34435444455555554443  


Q ss_pred             HhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHH
Q 015939          169 KLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILIT  248 (398)
Q Consensus       169 ~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~  248 (398)
                        -..     =-|..+-+-|+..++.+|..|.++|..+-..      +.. .=.+-++-+...+. ++-+++.|+.||-.
T Consensus       105 --LAL-----LSIntfQk~L~DpN~LiRasALRvlSsIRvp------~Ia-PI~llAIk~~~~D~-s~yVRk~AA~AIpK  169 (968)
T KOG1060|consen  105 --LAL-----LSINTFQKALKDPNQLIRASALRVLSSIRVP------MIA-PIMLLAIKKAVTDP-SPYVRKTAAHAIPK  169 (968)
T ss_pred             --cee-----eeHHHHHhhhcCCcHHHHHHHHHHHHhcchh------hHH-HHHHHHHHHHhcCC-cHHHHHHHHHhhHH
Confidence              111     2467777888888999998777777655332      111 11222233344455 78899999999999


Q ss_pred             hcC-CcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHH
Q 015939          249 LSV-YRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDA  327 (398)
Q Consensus       249 Ls~-~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a  327 (398)
                      |=+ +.+.+.++     +..+=.+|  .+.++.|+..|+.+...+|-  +. -.+. + +-...+.+++...+...|-..
T Consensus       170 LYsLd~e~k~qL-----~e~I~~LL--aD~splVvgsAv~AF~evCP--er-ldLI-H-knyrklC~ll~dvdeWgQvvl  237 (968)
T KOG1060|consen  170 LYSLDPEQKDQL-----EEVIKKLL--ADRSPLVVGSAVMAFEEVCP--ER-LDLI-H-KNYRKLCRLLPDVDEWGQVVL  237 (968)
T ss_pred             HhcCChhhHHHH-----HHHHHHHh--cCCCCcchhHHHHHHHHhch--hH-HHHh-h-HHHHHHHhhccchhhhhHHHH
Confidence            854 44555443     33455566  35788999999988888875  33 3333 2 557778888888888888888


Q ss_pred             HHHHHHhhcc
Q 015939          328 VVVIWSMCCV  337 (398)
Q Consensus       328 ~~~L~~l~~~  337 (398)
                      +..|..-|++
T Consensus       238 I~mL~RYAR~  247 (968)
T KOG1060|consen  238 INMLTRYARH  247 (968)
T ss_pred             HHHHHHHHHh
Confidence            8888776654

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=90.11  E-value=1.5  Score=36.22  Aligned_cols=73  Identities=11%  Similarity=0.130  Sum_probs=62.3

Q ss_pred             cHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          308 CAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       308 ~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      ++..|.+-|..+++.++-.|+.+|..+..+.| .....++...+.+..|..++.....+.+|+++..+++.-+.
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG-~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  114 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCG-THFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL  114 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCC-HHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence            45567777888999999999999999887654 67788888999999999999767788999999999988887

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=90.05  E-value=19  Score=34.78  Aligned_cols=195  Identities=16%  Similarity=0.150  Sum_probs=106.1

Q ss_pred             hHHHHHHHhcC-ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHH-HHHhcCCcchHHH
Q 015939          181 LPLFLEILREG-NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSI-LITLSVYRSVKAQ  258 (398)
Q Consensus       181 i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~a-L~~Ls~~~~~~~~  258 (398)
                      +..+++-|.++ +..+|..++.-|..-..+++.+..+.. +|.++.+++.+.+..+.....-++.+ ++-|+.+..+-..
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~~~~Fr~~~ra-~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l  101 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCADPQFRRQFRA-HGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL  101 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhCCHHHHHHHHH-cCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence            45555555533 667787887778888888999999988 89999999998654233244433334 3444444433333


Q ss_pred             HHHcCChHHHHHHhc--cc----------------------------------------CcchhhHHHHHHHHHHHh---
Q 015939          259 LVELGMVQILTRILS--DS----------------------------------------RTQILTVEKSIKMLSIVA---  293 (398)
Q Consensus       259 ~v~~g~v~~Lv~lL~--~~----------------------------------------~~~~~~~~~al~~L~~La---  293 (398)
                      +-+.+....++.++.  ..                                        .....-+--|+.+|..++   
T Consensus       102 ~~~~~~~~ll~~Ll~~~~~~~~~~~~~~~~~~~lsk~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~lall~le~l~~~~  181 (361)
T PF07814_consen  102 LLDRDSLRLLLKLLKVDKSLDVPSDSDSSRKKNLSKVQQKSRSLCKELLSSGSSWKSPKPPELSPQTLALLALESLVRSL  181 (361)
T ss_pred             hhchhHHHHHHHHhccccccccccchhhhhhhhhhHHHHHHHHHHHHHHhccccccccCCcccccccHHHHHHHHHHHHH
Confidence            334444444455443  00                                        011112223555555553   


Q ss_pred             -----C-------CHHHHHHHhhccCcHHHHHHHHhc----c------------ChhHHHHHHHHHHHhhccCCChhHHH
Q 015939          294 -----T-------CSEGRLALSEEASCAGRVVERVMK----V------------GKTAREDAVVVIWSMCCVYKDARVKE  345 (398)
Q Consensus       294 -----~-------~~~~~~~i~~~~g~v~~Lv~~l~~----~------------~~~~~~~a~~~L~~l~~~~~~~~~~~  345 (398)
                           .       .+.-++++. ..|++..++..+..    .            +-..-+.++++|.+.+..+.  ++..
T Consensus       182 ~~~~~~~~t~~~~~~~fkeelr-~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T~~~~--~nq~  258 (361)
T PF07814_consen  182 REAGDLSETSSRAGEWFKEELR-ELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVTFLSE--ENQS  258 (361)
T ss_pred             hhcccchhhhhhccccchhhhh-hHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHHhcCc--cchH
Confidence                 1       111133444 45889999999862    1            11224578899999887653  2222


Q ss_pred             HH--HhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHH
Q 015939          346 AV--VNSNGLTKLLLVMQSENEGIVRKMCGDLVKVL  379 (398)
Q Consensus       346 ~~--~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l  379 (398)
                      ..  ...+.++.++..+-..+.+...+.-...++.+
T Consensus       259 ~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrll  294 (361)
T PF07814_consen  259 YLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLL  294 (361)
T ss_pred             HHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence            22  23455555555554343445544333334433

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=89.60  E-value=5.6  Score=40.41  Aligned_cols=111  Identities=9%  Similarity=0.167  Sum_probs=60.3

Q ss_pred             HHHHHHHhhCCCC-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHH
Q 015939           71 RLIAHWSHQLTVP-EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAV  149 (398)
Q Consensus        71 ~~i~~~~~~~p~p-~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~  149 (398)
                      ..|.+|+...|+- .+.+..++......+..  .+..|++.|-.+|++++++...+      +..|+.+|.+ .+  ...
T Consensus        44 q~I~kffk~FP~l~~~Ai~a~~DLcEDed~~--iR~~aik~lp~~ck~~~~~v~kv------aDvL~QlL~t-dd--~~E  112 (556)
T PF05918_consen   44 QFIPKFFKHFPDLQEEAINAQLDLCEDEDVQ--IRKQAIKGLPQLCKDNPEHVSKV------ADVLVQLLQT-DD--PVE  112 (556)
T ss_dssp             HHHHHHHCC-GGGHHHHHHHHHHHHT-SSHH--HHHHHHHHGGGG--T--T-HHHH------HHHHHHHTT------HHH
T ss_pred             HHHHHHHhhChhhHHHHHHHHHHHHhcccHH--HHHHHHHhHHHHHHhHHHHHhHH------HHHHHHHHhc-cc--HHH
Confidence            3455555667765 44566666666655544  88999999999998855544333      5568888887 32  222


Q ss_pred             HHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHh---cCChhhHHHHHHHHH
Q 015939          150 LESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILR---EGNLDSKIGSIKILD  204 (398)
Q Consensus       150 ~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~---~~~~~~~~~a~~~L~  204 (398)
                      ...+-.+|..+...++.            +.+..+.+-+.   +++..+|+.+...|.
T Consensus       113 ~~~v~~sL~~ll~~d~k------------~tL~~lf~~i~~~~~~de~~Re~~lkFl~  158 (556)
T PF05918_consen  113 LDAVKNSLMSLLKQDPK------------GTLTGLFSQIESSKSGDEQVRERALKFLR  158 (556)
T ss_dssp             HHHHHHHHHHHHHH-HH------------HHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCcH------------HHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence            23344455544433221            23444444444   667788998888775

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=89.45  E-value=1.8  Score=35.87  Aligned_cols=73  Identities=12%  Similarity=0.169  Sum_probs=61.9

Q ss_pred             cHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          308 CAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       308 ~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      ++..|.+-|...++.++-.|+.+|..+..+.| .....++...+.+..|..++.......+|++...+++..+.
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG-~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~  110 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCG-KRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWAD  110 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC-HHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence            45567777777899999999999999988765 67788888999999999999775688999999999998876

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PRK14707 hypothetical protein; Provisional

Probab=89.29  E-value=52  Score=38.77  Aligned_cols=267  Identities=11%  Similarity=0.038  Sum_probs=152.8

Q ss_pred             HHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccch
Q 015939           87 VRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGV  166 (398)
Q Consensus        87 i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~  166 (398)
                      +.-++.-++....+ ..+..++..|..+...++..|..+- . .+|..+++-+..+++ ++ ..++|+..|.....++..
T Consensus       165 ~~lllNafSKw~~~-~~c~~aa~~la~~~~~~d~~~~~~~-~-q~ia~~lNa~sKWp~-~~-~c~~aa~~la~~l~~~~~  239 (2710)
T PRK14707        165 ISLALNAFSKWSDN-PDCQAVAPRFAALVASDDRLRSAMD-A-QGVATVLNALCKWPD-TP-DCGNAVSALAERLADESR  239 (2710)
T ss_pred             HHHHHHHhhcCCCC-chHHHHHHHHHHHhcCChhhhcccc-h-HHHHHHHHHHhcCCC-Ch-hHHHHHHHHHHHHcCcHH
Confidence            44445555544332 4678888888776655566666663 3 678888888887544 33 346777777665554433


Q ss_pred             HHHhhHhhhccCCChHHHHHHHhcC-ChhhHHHHHHHHH-HhhcCchhHHHhhchhhHHHHHHHHhccccCHHH-HHHHH
Q 015939          167 KEKLNRLILNTYNCLPLFLEILREG-NLDSKIGSIKILD-SISLDNESKRRVLETENLLSALFDYLKLAEDQAL-NDAIL  243 (398)
Q Consensus       167 ~~~~~~~il~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~-~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~-~~~a~  243 (398)
                         .+..  .+...+.-.++-|+.= +...-.+++..|- .|+.+...+..+.  ...+.-.+.-|+.-.+..+ ..++.
T Consensus       240 ---l~~~--~~~q~va~~lN~lsKwp~~~~C~~a~~~lA~rl~~~~~l~~al~--~q~vanalNalSKwpd~~vc~~Aa~  312 (2710)
T PRK14707        240 ---LRNE--LKPQELGNALNALSKWADTPVCAAAASALAERLVDDPGLRKALD--PINVTQALNALSKWADLPVCAEAAI  312 (2710)
T ss_pred             ---HHHh--CChHHHHHHHHHHhcCCCchHHHHHHHHHHHHHhhhHHHHHhcC--HHHHHHHHhhhhcCCCchHHHHHHH
Confidence               1332  3555666667777643 3333344444444 7777666655554  3344555555555434444 44444


Q ss_pred             HHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhc-cChh
Q 015939          244 SILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMK-VGKT  322 (398)
Q Consensus       244 ~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~-~~~~  322 (398)
                      .+-..|..+.+-++. .+.-.+..++.-|+...++......|..+-..|+.+++-++.+-  ..++..+++.+.+ .+..
T Consensus       313 ~la~rl~~d~~l~~~-~~~~~~~~~LNalsKWpd~~~C~~Aa~~LA~rl~~d~~l~~~l~--~q~~a~~lNalsKWp~~~  389 (2710)
T PRK14707        313 ALAERLADDPELCKA-LNARGLSTALNALSKWPDNPVCAAAVSALAERLVADPELRKDLE--PQGVSSVLNALSKWPDTP  389 (2710)
T ss_pred             HHHHHHhccHhhhhc-cchHHHHHHHHHhhcCCCchhHHHHHHHHHHHhccCHhhhcccc--hhHHHHHHhhhhcCCCch
Confidence            445566665555533 45556677777776544444444444444455888888888875  3567778888877 4455


Q ss_pred             HHHHHHHHHHH-hhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHH
Q 015939          323 AREDAVVVIWS-MCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMC  372 (398)
Q Consensus       323 ~~~~a~~~L~~-l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A  372 (398)
                      +...|+..|.. +.   +|.+.++.+-..|+ ..++..|....+..+-..|
T Consensus       390 ~c~~aa~~LA~~l~---~d~~l~~~~~~Q~v-an~lnalsKWPd~~~C~~a  436 (2710)
T PRK14707        390 VCAAAASALAEHVV---DDLELRKGLDPQGV-SNALNALAKWPDLPICGQA  436 (2710)
T ss_pred             HHHHHHHHHHHHhc---cChhhhhhcchhhH-HHHHHHhhcCCcchhHHHH
Confidence            55555555543 44   34566665555544 4466666555444444443

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=89.13  E-value=6.8  Score=42.28  Aligned_cols=153  Identities=16%  Similarity=0.193  Sum_probs=96.0

Q ss_pred             hhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHH
Q 015939          220 ENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGR  299 (398)
Q Consensus       220 ~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~  299 (398)
                      .++++.|+..|++. +..++..|++-+..+....+  ..+++. +|...++++. +-+++..---++-+|..|+.-.--.
T Consensus       340 E~vie~Lls~l~d~-dt~VrWSaAKg~grvt~rlp--~~Lad~-vi~svid~~~-p~e~~~aWHgacLaLAELA~rGlLl  414 (1133)
T KOG1943|consen  340 EFVIEHLLSALSDT-DTVVRWSAAKGLGRVTSRLP--PELADQ-VIGSVIDLFN-PAEDDSAWHGACLALAELALRGLLL  414 (1133)
T ss_pred             HHHHHHHHHhccCC-cchhhHHHHHHHHHHHccCc--HHHHHH-HHHHHHHhcC-cCCchhHHHHHHHHHHHHHhcCCcc
Confidence            46788888888888 88899999999999987766  444444 7778888664 3344555557888888888622222


Q ss_pred             HHHhhccCcHHHHHHHHhc--------cChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHH
Q 015939          300 LALSEEASCAGRVVERVMK--------VGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKM  371 (398)
Q Consensus       300 ~~i~~~~g~v~~Lv~~l~~--------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~  371 (398)
                      -...+  .++|.+++-+.-        .+..+++.|+-+.|.++......+... ++ ......|+...--+..-..|+.
T Consensus       415 ps~l~--dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p-~l-~~L~s~LL~~AlFDrevncRRA  490 (1133)
T KOG1943|consen  415 PSLLE--DVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKP-VL-QSLASALLIVALFDREVNCRRA  490 (1133)
T ss_pred             hHHHH--HHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhH-HH-HHHHHHHHHHHhcCchhhHhHH
Confidence            22221  345555554421        467789999999999998753222222 11 2233333333334445567777


Q ss_pred             HHHHHHH-Hhc
Q 015939          372 CGDLVKV-LGK  381 (398)
Q Consensus       372 A~~lL~~-l~~  381 (398)
                      |..+++. .++
T Consensus       491 AsAAlqE~VGR  501 (1133)
T KOG1943|consen  491 ASAALQENVGR  501 (1133)
T ss_pred             HHHHHHHHhcc
Confidence            7666654 444

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=88.76  E-value=34  Score=36.57  Aligned_cols=156  Identities=12%  Similarity=0.131  Sum_probs=103.3

Q ss_pred             cCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHh--cCChhhHHHHHHHHHH
Q 015939          128 YGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILR--EGNLDSKIGSIKILDS  205 (398)
Q Consensus       128 ~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~--~~~~~~~~~a~~~L~~  205 (398)
                      .|+++..|..+...   .+.+++.....+|...+.-++..    .. ..+.-+.|.++.+..  +.++.+...+-.++..
T Consensus       528 ~p~ild~L~qlas~---~s~evl~llmE~Ls~vv~~dpef----~a-s~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~e  599 (1005)
T KOG2274|consen  528 QPMILDGLLQLASK---SSDEVLVLLMEALSSVVKLDPEF----AA-SMESKICPLTINLFLKYSEDPQVASLAQDLFEE  599 (1005)
T ss_pred             chHHHHHHHHHccc---ccHHHHHHHHHHHHHHhccChhh----hh-hhhcchhHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence            34666677777655   23456677777888888776652    22 335567777777654  4477777777788888


Q ss_pred             hhcCchhHHHhhchhhHHHHHHHHhcccc---CHHHHHHHHHHHHHhcCCcc--hHHHHHHcCChHHHHHHhcccCcchh
Q 015939          206 ISLDNESKRRVLETENLLSALFDYLKLAE---DQALNDAILSILITLSVYRS--VKAQLVELGMVQILTRILSDSRTQIL  280 (398)
Q Consensus       206 L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~---~~~~~~~a~~aL~~Ls~~~~--~~~~~v~~g~v~~Lv~lL~~~~~~~~  280 (398)
                      |+...++...+.  .-.||.|+..|..+.   .+....-++..|-.+..+.+  --..++.. ++|++++..- +++|.+
T Consensus       600 l~q~~~~~g~m~--e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~-~FpaVak~tl-HsdD~~  675 (1005)
T KOG2274|consen  600 LLQIAANYGPMQ--ERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICY-AFPAVAKITL-HSDDHE  675 (1005)
T ss_pred             HHHHHHhhcchH--HHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHH-HhHHhHhhee-ecCChH
Confidence            887644443332  357999999998661   24566667777776654332  22233333 8899998886 467888


Q ss_pred             hHHHHHHHHHHHhCC
Q 015939          281 TVEKSIKMLSIVATC  295 (398)
Q Consensus       281 ~~~~al~~L~~La~~  295 (398)
                      ...++-.+|+.+-..
T Consensus       676 tlQ~~~EcLra~Is~  690 (1005)
T KOG2274|consen  676 TLQNATECLRALISV  690 (1005)
T ss_pred             HHHhHHHHHHHHHhc
Confidence            899999999997663

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=88.76  E-value=0.97  Score=44.23  Aligned_cols=160  Identities=9%  Similarity=0.065  Sum_probs=91.0

Q ss_pred             HHHHHHcCCCCchhHHHHHHHHHHHhh----hhhhhhhhhhhcCC-cHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939           90 WIEKIKSENESENSCVDYLVKVAKFAT----GCEANRRFLASYGG-FVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN  164 (398)
Q Consensus        90 l~~~l~~~~~~~~~~~~al~~L~~l~~----~~~~~r~~i~~~~g-~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~  164 (398)
                      ++..|.+...+  .+.++.+.+.++..    .-|..+.+-.+..| .+..++..-........++..+|+++|.|+..--
T Consensus       438 il~sl~d~~ln--~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQvl  515 (728)
T KOG4535|consen  438 ILMSLEDKSLN--VRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQFL  515 (728)
T ss_pred             HHHHhhhHhHh--HHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHHH
Confidence            34444444444  77778777776542    22332222221101 1222222222112223467789999999887532


Q ss_pred             chHH--HhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhc-hhhHHHHHHHHhccccCHHHHHH
Q 015939          165 GVKE--KLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLE-TENLLSALFDYLKLAEDQALNDA  241 (398)
Q Consensus       165 ~~~~--~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~  241 (398)
                      +.-+  .+ .. +.+...+..+-..+-.+...+|.+++.++.||..++..+..-.. ...+++.|..++.+..+.+++..
T Consensus       516 q~i~~~~~-~e-~~~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~  593 (728)
T KOG4535|consen  516 QPIEKPTF-AE-IIEESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRIR  593 (728)
T ss_pred             HHhhhccH-HH-HHHHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEeeh
Confidence            2110  11 11 11222222222333456789999999999999999765433222 14578999999998889999999


Q ss_pred             HHHHHHHhcCCc
Q 015939          242 ILSILITLSVYR  253 (398)
Q Consensus       242 a~~aL~~Ls~~~  253 (398)
                      |+.+|..-....
T Consensus       594 AA~aL~vp~~re  605 (728)
T KOG4535|consen  594 AAAALSVPGKRE  605 (728)
T ss_pred             hhhhhcCCCCcc
Confidence            999998776543

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=88.76  E-value=1.9  Score=38.56  Aligned_cols=81  Identities=19%  Similarity=0.243  Sum_probs=64.5

Q ss_pred             hhhHHHHHHHHHHhhcCchhHHHhhch------hhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcch-HHHH-HHcCC
Q 015939          193 LDSKIGSIKILDSISLDNESKRRVLET------ENLLSALFDYLKLAEDQALNDAILSILITLSVYRSV-KAQL-VELGM  264 (398)
Q Consensus       193 ~~~~~~a~~~L~~L~~~~~~~~~i~~~------~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~-~~~~-v~~g~  264 (398)
                      ..-|..|..+|..|+..+.|-+.+..+      ...+..|+++|....++-.++-|+..|.+|+..++. +..+ .+.++
T Consensus       138 lSPqrlaLEaLcKLsV~e~NVDliLaTpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~  217 (257)
T PF12031_consen  138 LSPQRLALEALCKLSVIENNVDLILATPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPC  217 (257)
T ss_pred             CCHHHHHHHHHHHhheeccCcceeeeCCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhch
Confidence            466889999999999998888887652      234566777777777888999999999999987763 3333 38899


Q ss_pred             hHHHHHHhc
Q 015939          265 VQILTRILS  273 (398)
Q Consensus       265 v~~Lv~lL~  273 (398)
                      |..|+.++.
T Consensus       218 i~~Li~FiE  226 (257)
T PF12031_consen  218 ISHLIAFIE  226 (257)
T ss_pred             HHHHHHHHH
Confidence            999999994

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=88.66  E-value=2.6  Score=34.29  Aligned_cols=73  Identities=11%  Similarity=0.081  Sum_probs=59.8

Q ss_pred             cHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhh--cCcHHHHHHHHHHHHHHhc
Q 015939          308 CAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQS--ENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       308 ~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~--~~~~~~k~~A~~lL~~l~~  381 (398)
                      ++..|-+-|+.+++.++-.|+.+|-.+..+.+ .....++.....+..|+.++..  ..++.+|+++..+++..+.
T Consensus        38 a~raL~krl~~~n~~vql~AL~lLd~~vkNcg-~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~  112 (133)
T cd03561          38 AARAIRKKIKYGNPHVQLLALTLLELLVKNCG-KPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSE  112 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCC-hHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHH
Confidence            34557777888999999999999999888754 5677777777888888888865  4578999999999988887

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>KOG0883 consensus Cyclophilin type, U box-containing peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=88.34  E-value=0.36  Score=45.49  Aligned_cols=33  Identities=24%  Similarity=0.622  Sum_probs=30.4

Q ss_pred             ccccCccccCCCceecCCCcccchhHHHHHHhc
Q 015939           14 FRCPISLDVMKSPVSLCTGVTYDRSSIQHWLES   46 (398)
Q Consensus        14 ~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~   46 (398)
                      -.|.++...|.|||-+..|-.|+-..|-.|+..
T Consensus        41 ~hC~lt~~Pfe~PvC~~dg~vFd~~~Ivp~lkk   73 (518)
T KOG0883|consen   41 NHCSLTMLPFEDPVCTVDGTVFDLTAIVPWLKK   73 (518)
T ss_pred             hhceeccccccCcccccCCcEEeeehhhHHHHH
Confidence            368899999999999999999999999999863

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.28  E-value=0.14  Score=46.35  Aligned_cols=39  Identities=26%  Similarity=0.361  Sum_probs=30.8

Q ss_pred             cccccCccccCCCceecCCCccc-chhHHHHHHhcCCC--CCCcccccC
Q 015939           13 LFRCPISLDVMKSPVSLCTGVTY-DRSSIQHWLESGHD--TCPATMQIL   58 (398)
Q Consensus        13 ~~~Cpi~~~~~~dPv~~~~g~~~-~r~~i~~~~~~~~~--~CP~~~~~l   58 (398)
                      +.+|-||.+.-.|=|.|+|||.. |-+|       |.+  .||+||+.+
T Consensus       300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~C-------Gkrm~eCPICRqyi  341 (350)
T KOG4275|consen  300 RRLCAICMDAPRDCVFLECGHMVTCTKC-------GKRMNECPICRQYI  341 (350)
T ss_pred             HHHHHHHhcCCcceEEeecCcEEeehhh-------ccccccCchHHHHH
Confidence            67899999999999999999954 3333       432  699998753

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=88.24  E-value=37  Score=35.77  Aligned_cols=39  Identities=18%  Similarity=0.292  Sum_probs=28.5

Q ss_pred             HhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcc
Q 015939          229 YLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSD  274 (398)
Q Consensus       229 lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~  274 (398)
                      +|.+. ++.+..+++.+.|.++.-.++.      +.+.+|+++|++
T Consensus       295 Ll~S~-n~sVVmA~aql~y~lAP~~~~~------~i~kaLvrLLrs  333 (968)
T KOG1060|consen  295 LLQSR-NPSVVMAVAQLFYHLAPKNQVT------KIAKALVRLLRS  333 (968)
T ss_pred             HHhcC-CcHHHHHHHhHHHhhCCHHHHH------HHHHHHHHHHhc
Confidence            44455 7889999999999998655433      246788888864

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=88.06  E-value=1.7  Score=35.71  Aligned_cols=73  Identities=14%  Similarity=0.152  Sum_probs=59.8

Q ss_pred             cHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHH---HHHHHHHHHHHHhc
Q 015939          308 CAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGI---VRKMCGDLVKVLGK  381 (398)
Q Consensus       308 ~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~---~k~~A~~lL~~l~~  381 (398)
                      ++..|-+-|..+++.++..|+.+|..+..+.+ +....++.....+..|..++.......   +|+++..+++..+.
T Consensus        43 a~~~l~krl~~~~~~vq~~aL~lld~lvkNcg-~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~  118 (140)
T PF00790_consen   43 AARALRKRLKHGNPNVQLLALTLLDALVKNCG-PRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE  118 (140)
T ss_dssp             HHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSH-HHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence            34557777888999999999999999888754 678888888889999999886654554   89999999888777

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]

Probab=87.96  E-value=0.21  Score=51.02  Aligned_cols=67  Identities=16%  Similarity=0.352  Sum_probs=47.6

Q ss_pred             CCCcccccCccccCCCceecCCCcccchhHHHHHHh--cCCCCCCcccccCCCCCCcccHHHHHHHHHH
Q 015939           10 VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLE--SGHDTCPATMQILSTKEFVPNLTLHRLIAHW   76 (398)
Q Consensus        10 ~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~--~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~   76 (398)
                      +.....||||.....+|+.++|-|.||+.|+-..|.  .+...||+|+-........-.....+++++.
T Consensus        18 ~~k~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s~~Es~r~sq~vqe~   86 (684)
T KOG4362|consen   18 MQKILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRSLRESPRFSQLSKES   86 (684)
T ss_pred             HhhhccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhhccccchHHHHHHHh
Confidence            345568999999999999999999999999988653  3456799998555433322233334444443

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=87.73  E-value=46  Score=36.29  Aligned_cols=244  Identities=14%  Similarity=0.068  Sum_probs=137.1

Q ss_pred             HHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccch
Q 015939           87 VRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGV  166 (398)
Q Consensus        87 i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~  166 (398)
                      +..|++.+++.+..  .+=.|++.+..+....|   ..+++  .++...++++.. .+ +......++-+|..|+...-.
T Consensus       343 ie~Lls~l~d~dt~--VrWSaAKg~grvt~rlp---~~Lad--~vi~svid~~~p-~e-~~~aWHgacLaLAELA~rGlL  413 (1133)
T KOG1943|consen  343 IEHLLSALSDTDTV--VRWSAAKGLGRVTSRLP---PELAD--QVIGSVIDLFNP-AE-DDSAWHGACLALAELALRGLL  413 (1133)
T ss_pred             HHHHHHhccCCcch--hhHHHHHHHHHHHccCc---HHHHH--HHHHHHHHhcCc-CC-chhHHHHHHHHHHHHHhcCCc
Confidence            33445555555543  66678888888887766   23333  456667776654 22 234557888888888753221


Q ss_pred             HHHhhHhhhccCCChHHHHHHHh--------cCChhhHHHHHHHHHHhhcCchhH--HHhhchhhHHHH-HHHHhccccC
Q 015939          167 KEKLNRLILNTYNCLPLFLEILR--------EGNLDSKIGSIKILDSISLDNESK--RRVLETENLLSA-LFDYLKLAED  235 (398)
Q Consensus       167 ~~~~~~~il~~~g~i~~Lv~lL~--------~~~~~~~~~a~~~L~~L~~~~~~~--~~i~~~~g~i~~-Lv~lL~~~~~  235 (398)
                      -+. +     -..++|.++.-|+        +....+|..|+.+++.++...+..  ..+..  ..... |+..+-+. +
T Consensus       414 lps-~-----l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~--~L~s~LL~~AlFDr-e  484 (1133)
T KOG1943|consen  414 LPS-L-----LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQ--SLASALLIVALFDR-E  484 (1133)
T ss_pred             chH-H-----HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHH--HHHHHHHHHHhcCc-h
Confidence            000 0     1245666666664        224578999999999998773322  11211  22233 23344555 7


Q ss_pred             HHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcch--hhHHHHHHHHHH-HhCCHHHHHHHhhccCcHHHH
Q 015939          236 QALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQI--LTVEKSIKMLSI-VATCSEGRLALSEEASCAGRV  312 (398)
Q Consensus       236 ~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~--~~~~~al~~L~~-La~~~~~~~~i~~~~g~v~~L  312 (398)
                      ...+++|..|+........|.         |.=+++++. -+.-  ..+.++-..|.. ++..+.-++.+.++      +
T Consensus       485 vncRRAAsAAlqE~VGR~~n~---------p~Gi~Lis~-~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~------L  548 (1133)
T KOG1943|consen  485 VNCRRAASAALQENVGRQGNF---------PHGISLIST-IDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNH------L  548 (1133)
T ss_pred             hhHhHHHHHHHHHHhccCCCC---------CCchhhhhh-cchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHH------H
Confidence            889999999998876554332         222233321 0111  222233333322 33334344444322      2


Q ss_pred             HHH-HhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHH
Q 015939          313 VER-VMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKM  371 (398)
Q Consensus       313 v~~-l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~  371 (398)
                      +.. +...+...++.|..+|..|+..      ..+-...+++++++....+. +...|.-
T Consensus       549 ~t~Kv~HWd~~irelaa~aL~~Ls~~------~pk~~a~~~L~~lld~~ls~-~~~~r~g  601 (1133)
T KOG1943|consen  549 LTKKVCHWDVKIRELAAYALHKLSLT------EPKYLADYVLPPLLDSTLSK-DASMRHG  601 (1133)
T ss_pred             HhcccccccHHHHHHHHHHHHHHHHh------hHHhhcccchhhhhhhhcCC-ChHHhhh
Confidence            222 3347999999999999998853      34555677888888777655 4554443

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=87.46  E-value=1.6  Score=42.75  Aligned_cols=182  Identities=12%  Similarity=0.041  Sum_probs=105.1

Q ss_pred             hHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC----CcchHHHHHH---cCChHH
Q 015939          195 SKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV----YRSVKAQLVE---LGMVQI  267 (398)
Q Consensus       195 ~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~----~~~~~~~~v~---~g~v~~  267 (398)
                      ++..|.+.+..+..++..+.-..-...+...++..|.+. ....+..+.+++.|++.    +-.+-....+   .-.+..
T Consensus       407 v~~aA~Ra~~VyVLHp~lr~d~~fv~~aa~~il~sl~d~-~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~  485 (728)
T KOG4535|consen  407 VKAAASRALGVYVLHPCLRQDVIFVADAANAILMSLEDK-SLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLK  485 (728)
T ss_pred             HHHHHHhhceeEEeccchhhhHHHHHHHHHHHHHHhhhH-hHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHH
Confidence            444555555555556655544443356677777888776 67788899999998853    2223221211   112222


Q ss_pred             HHHHhc-ccCcchhhHHHHHHHHHHHhCCHHHH-----HHHhhccCcHHHHHHH-HhccChhHHHHHHHHHHHhhccCCC
Q 015939          268 LTRILS-DSRTQILTVEKSIKMLSIVATCSEGR-----LALSEEASCAGRVVER-VMKVGKTAREDAVVVIWSMCCVYKD  340 (398)
Q Consensus       268 Lv~lL~-~~~~~~~~~~~al~~L~~La~~~~~~-----~~i~~~~g~v~~Lv~~-l~~~~~~~~~~a~~~L~~l~~~~~~  340 (398)
                      ++..-. ......++..++...|.|+..--+..     ..+. + |.+..+..- .-.+.-+++=+|+.++.||-++.. 
T Consensus       486 ~~~~A~~~~Ad~dkV~~navraLgnllQvlq~i~~~~~~e~~-~-~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a-  562 (728)
T KOG4535|consen  486 MLRSAIEASADKDKVKSNAVRALGNLLQFLQPIEKPTFAEII-E-ESIQALISTVLTEAAMKVRWNACYAMGNLFKNPA-  562 (728)
T ss_pred             HHHHHHHhhhhhhhhhhHHHHHHhhHHHHHHHhhhccHHHHH-H-HHHHhcccceecccccccchHHHHHHHHhhcCcc-
Confidence            332221 12345678889999999987622211     1222 1 222222221 123677888999999999987521 


Q ss_pred             hhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Q 015939          341 ARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLG  380 (398)
Q Consensus       341 ~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~  380 (398)
                      -.....--..-+++.|+.++.+..+-++|-+|+.+|..-.
T Consensus       563 ~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi~AA~aL~vp~  602 (728)
T KOG4535|consen  563 LPLQTAPWASQAFNALTSLVTSCKNFKVRIRAAAALSVPG  602 (728)
T ss_pred             ccccCCCchHHHHHHHHHHHHHhccceEeehhhhhhcCCC
Confidence            1122222334578888888877778889888888775433

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=87.31  E-value=8.3  Score=40.21  Aligned_cols=187  Identities=10%  Similarity=0.000  Sum_probs=124.9

Q ss_pred             hccCCChHHHHHHHhcCChhhHHHHHHHHHH-hhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCC-
Q 015939          175 LNTYNCLPLFLEILREGNLDSKIGSIKILDS-ISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVY-  252 (398)
Q Consensus       175 l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~-L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-  252 (398)
                      ....|+...|..+...+..+.+.+...+|.. +.. +..     .....++++...+++....-..-.++.++.||++. 
T Consensus       500 ~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f-~~~-----~~~~v~~~~~s~~~~d~~~~en~E~L~altnLas~s  573 (748)
T KOG4151|consen  500 KIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDF-PGE-----RSYEVVKPLDSALHNDEKGLENFEALEALTNLASIS  573 (748)
T ss_pred             cccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCC-CCC-----chhhhhhhhcchhhhhHHHHHHHHHHHHhhcccCcc
Confidence            5588999999999998888888888888872 111 111     11345666666666542222345788899999764 


Q ss_pred             cchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHH-HhhccCcHHHHHHHHhccChhHHHHHHHHH
Q 015939          253 RSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLA-LSEEASCAGRVVERVMKVGKTAREDAVVVI  331 (398)
Q Consensus       253 ~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~-i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L  331 (398)
                      ...+..+...-+++.+-+++.  .+++..+..++..+.||.-++-.... +++....++.....+........-.+++++
T Consensus       574 ~s~r~~i~ke~~~~~ie~~~~--ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E~~~lA~a~a~  651 (748)
T KOG4151|consen  574 ESDRQKILKEKALGKIEELMT--EENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADEKFELAGAGAL  651 (748)
T ss_pred             hhhHHHHHHHhcchhhHHHhh--cccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhhHHhhhccccc
Confidence            457777887767777666663  46889999999999999998876554 454456778777777766666666667666


Q ss_pred             HHhhccCCChhHHH-HHHhcCCHHHHHHHHhhcCcHHHHHHH
Q 015939          332 WSMCCVYKDARVKE-AVVNSNGLTKLLLVMQSENEGIVRKMC  372 (398)
Q Consensus       332 ~~l~~~~~~~~~~~-~~~~~g~~~~Ll~~l~~~~~~~~k~~A  372 (398)
                      ..|+...  ..... ..--......++..++++ ++.+|..-
T Consensus       652 a~I~sv~--~n~c~~~~~~~~~~e~~~~~i~~~-~~~~qhrg  690 (748)
T KOG4151|consen  652 AAITSVV--ENHCSRILELLEWLEILVRAIQDE-DDEIQHRG  690 (748)
T ss_pred             cchhhcc--hhhhhhHHHhhcchHHHHHhhcCc-hhhhhhhh
Confidence            6555443  22222 333355666677777665 56666554

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=87.24  E-value=23  Score=32.28  Aligned_cols=63  Identities=16%  Similarity=0.235  Sum_probs=48.5

Q ss_pred             CChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhc
Q 015939          263 GMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCC  336 (398)
Q Consensus       263 g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~  336 (398)
                      -+|+.|.+.|.+....+.++-.|+.+|..++.           +.+++.|.+++.+.++-+++.+..+|-.+-.
T Consensus       218 ~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa~-----------e~~~~vL~e~~~D~~~vv~esc~valdm~ey  280 (289)
T KOG0567|consen  218 AAIPSLIKVLLDETEHPMVRHEAAEALGAIAD-----------EDCVEVLKEYLGDEERVVRESCEVALDMLEY  280 (289)
T ss_pred             hhhHHHHHHHHhhhcchHHHHHHHHHHHhhcC-----------HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHH
Confidence            36889999887666788888899999998875           3456667777777888888888877765544

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=87.16  E-value=3.8  Score=43.38  Aligned_cols=146  Identities=13%  Similarity=0.205  Sum_probs=97.2

Q ss_pred             CcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhc-cCCChHHHHHHHhcCChhhHHHHHHHHHHhhc
Q 015939          130 GFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILN-TYNCLPLFLEILREGNLDSKIGSIKILDSISL  208 (398)
Q Consensus       130 g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~-~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~  208 (398)
                      ..+|.|++.... .+++.+  .+=+.+|.+...+-+.     ..++- -+..+|.|++-|+-.|.++|..+..+|..+..
T Consensus       867 ~ivP~l~~~~~t-~~~~~K--~~yl~~LshVl~~vP~-----~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~  938 (1030)
T KOG1967|consen  867 DIVPILVSKFET-APGSQK--HNYLEALSHVLTNVPK-----QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLT  938 (1030)
T ss_pred             hhHHHHHHHhcc-CCccch--hHHHHHHHHHHhcCCH-----HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHH
Confidence            568999988885 444444  5566677766665442     22121 35678999999999999999999999987655


Q ss_pred             C-chhHHHhhchhhHHHHHHHHhccccC--HHHHHHHHHHHHHhcC-CcchHHHHHHcCChHHHHHHhcccCcchhhHHH
Q 015939          209 D-NESKRRVLETENLLSALFDYLKLAED--QALNDAILSILITLSV-YRSVKAQLVELGMVQILTRILSDSRTQILTVEK  284 (398)
Q Consensus       209 ~-~~~~~~i~~~~g~i~~Lv~lL~~~~~--~~~~~~a~~aL~~Ls~-~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~  284 (398)
                      . +.....-+  .-.+|.++.+=++.++  ..++..|+.+|..|.. -+.+.-.-..-.++.+|+..|.+  ...-+++.
T Consensus       939 ~~~tL~t~~~--~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdD--kKRlVR~e 1014 (1030)
T KOG1967|consen  939 ESETLQTEHL--STLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDD--KKRLVRKE 1014 (1030)
T ss_pred             hccccchHHH--hHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCc--HHHHHHHH
Confidence            4 32222211  3467777776665532  6789999999999987 44443333455588889999943  45556666


Q ss_pred             HHH
Q 015939          285 SIK  287 (398)
Q Consensus       285 al~  287 (398)
                      |..
T Consensus      1015 Av~ 1017 (1030)
T KOG1967|consen 1015 AVD 1017 (1030)
T ss_pred             HHH
Confidence            654

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=87.09  E-value=26  Score=32.73  Aligned_cols=167  Identities=11%  Similarity=0.100  Sum_probs=102.3

Q ss_pred             HHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchH--HHh
Q 015939           93 KIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVK--EKL  170 (398)
Q Consensus        93 ~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~--~~~  170 (398)
                      .+.+.+.  +.+..|+++|...+--+.   +...   ..++.+...++. .  +..+...|+.++..+...-+..  ...
T Consensus        35 ~v~~~~~--~vR~~al~cLGl~~Lld~---~~a~---~~l~l~~~~~~~-~--~~~v~~~al~~l~Dll~~~g~~~~~~~  103 (298)
T PF12719_consen   35 AVQSSDP--AVRELALKCLGLCCLLDK---ELAK---EHLPLFLQALQK-D--DEEVKITALKALFDLLLTHGIDIFDSE  103 (298)
T ss_pred             HhcCCCH--HHHHHHHHHHHHHHHhCh---HHHH---HHHHHHHHHHHh-C--CHHHHHHHHHHHHHHHHHcCchhccch
Confidence            3455554  388899999998886644   2222   235666777744 2  4566788999988776532210  000


Q ss_pred             hH--hhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccc---cCHHHHHHHHHH
Q 015939          171 NR--LILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLA---EDQALNDAILSI  245 (398)
Q Consensus       171 ~~--~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~---~~~~~~~~a~~a  245 (398)
                      ..  .-......+..+.+.|++.+++++..|+..+..|...+....    ...++..|+-+.-++   ++..+++--...
T Consensus       104 ~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~----~~~vL~~Lll~yF~p~t~~~~~LrQ~L~~F  179 (298)
T PF12719_consen  104 SDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD----PPKVLSRLLLLYFNPSTEDNQRLRQCLSVF  179 (298)
T ss_pred             hccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCcccCCcHHHHHHHHHH
Confidence            00  001123578888899999999999999999998876643322    145666666665554   234444444444


Q ss_pred             HHHhcCCcchHHHHHHcCChHHHHHHhcc
Q 015939          246 LITLSVYRSVKAQLVELGMVQILTRILSD  274 (398)
Q Consensus       246 L~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~  274 (398)
                      +-..+......+..+..+.++.+-.+...
T Consensus       180 fp~y~~s~~~~Q~~l~~~f~~~l~~~~~~  208 (298)
T PF12719_consen  180 FPVYASSSPENQERLAEAFLPTLRTLSNA  208 (298)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHHHHhC
Confidence            55667655544455556688888887753

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=87.08  E-value=21  Score=36.78  Aligned_cols=158  Identities=16%  Similarity=0.113  Sum_probs=84.1

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhhhhcC--CcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccC-C
Q 015939          103 SCVDYLVKVAKFATGCEANRRFLASYG--GFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTY-N  179 (398)
Q Consensus       103 ~~~~al~~L~~l~~~~~~~r~~i~~~~--g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~-g  179 (398)
                      .+.-|+..|+.+.++...+-.++-...  ..+..++..+.    .++..+-.++++|.|+..+...    ++.+.... .
T Consensus       560 ~~fPalDilRl~v~h~~~~s~~~~~~~~~~~~~~li~~~~----~~~an~ll~vR~L~N~f~~~~g----~~~~~s~~~~  631 (745)
T KOG0301|consen  560 MMFPALDILRLAVKHHSSNSLFCDREEGQNLVGTLIPILN----ADPANQLLVVRCLANLFSNPAG----RELFMSRLES  631 (745)
T ss_pred             HhhhHHHHHHHHHhccchhhhhhhhhhhhHHHHhhhcccc----cchhHHHHHHHHHHHhccCHHH----HHHHHHHHHH
Confidence            567788888887776555444333220  23333343333    2233446788999999887544    34322221 1


Q ss_pred             ChHHHHHHHhcC-ChhhHHHHHHHHHHhhcC--chhHHHhhchhhHHHHHHHHhc----cccCHHHHHHHHHHHHHhcCC
Q 015939          180 CLPLFLEILREG-NLDSKIGSIKILDSISLD--NESKRRVLETENLLSALFDYLK----LAEDQALNDAILSILITLSVY  252 (398)
Q Consensus       180 ~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~lL~----~~~~~~~~~~a~~aL~~Ls~~  252 (398)
                      .+..++. .++. +..++...+....|++..  ..+..     .|+.+.|...+.    ...+.++.-.++.||.+|+..
T Consensus       632 i~~~~~~-~~s~~~knl~ia~atlaln~sv~l~~~~~~-----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~  705 (745)
T KOG0301|consen  632 ILDPVIE-ASSLSNKNLQIALATLALNYSVLLIQDNEQ-----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTV  705 (745)
T ss_pred             Hhhhhhh-hhcccchhHHHHHHHHHHHHHHHHHhcccc-----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccc
Confidence            2222222 2233 345554433333344332  11111     233344443333    223445566778888888988


Q ss_pred             cchHHHHHHcCChHHHHHHhcc
Q 015939          253 RSVKAQLVELGMVQILTRILSD  274 (398)
Q Consensus       253 ~~~~~~~v~~g~v~~Lv~lL~~  274 (398)
                      +.+..++..--.|..++.-+++
T Consensus       706 ~~~~~~~A~~~~v~sia~~~~~  727 (745)
T KOG0301|consen  706 DASVIQLAKNRSVDSIAKKLKE  727 (745)
T ss_pred             cHHHHHHHHhcCHHHHHHHHHH
Confidence            8888888876677788777763

>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning

Probab=87.00  E-value=7.6  Score=29.75  Aligned_cols=95  Identities=13%  Similarity=0.284  Sum_probs=63.9

Q ss_pred             hhHHHHHHHHH-HhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHh
Q 015939          194 DSKIGSIKILD-SISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRIL  272 (398)
Q Consensus       194 ~~~~~a~~~L~-~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL  272 (398)
                      ++|..|..=|. .+...--....+....+.+..|+...... +......++..|..|...+.....+.+-|++..|-++-
T Consensus         2 EIR~RAL~~I~~Kl~~~Li~~~dl~~~~~Ll~~LleWFnf~-~~~~~~~VL~Ll~~L~~~~~a~~~l~~iG~~~fL~klr   80 (98)
T PF14726_consen    2 EIRVRALESIEFKLEHGLISEEDLVKERLLLKQLLEWFNFP-PVPMKEEVLALLLRLLKSPYAAQILRDIGAVRFLSKLR   80 (98)
T ss_pred             hHHHHHHHHHHHHHHhccccHHHHccHHHHHHHHHHHhCCC-CCccHHHHHHHHHHHHhCcHHHHHHHHccHHHHHHHHH
Confidence            45554443332 33333222233334467888888888777 45588999999999999999999999999999977776


Q ss_pred             cccCcchhhHHHHHHHHHH
Q 015939          273 SDSRTQILTVEKSIKMLSI  291 (398)
Q Consensus       273 ~~~~~~~~~~~~al~~L~~  291 (398)
                        +..++......-+++..
T Consensus        81 --~~~~~~~~~~id~il~~   97 (98)
T PF14726_consen   81 --PNVEPNLQAEIDEILDQ   97 (98)
T ss_pred             --hcCCHHHHHHHHHHHhc
Confidence              34566666665555543

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=86.96  E-value=23  Score=39.93  Aligned_cols=168  Identities=14%  Similarity=0.147  Sum_probs=108.7

Q ss_pred             HHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcc--hHHHHHHcCChHHHHHHhcc
Q 015939          197 IGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRS--VKAQLVELGMVQILTRILSD  274 (398)
Q Consensus       197 ~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~--~~~~~v~~g~v~~Lv~lL~~  274 (398)
                      ..+.++...|+...+.-..+   .+.+..++..|..+ .+.++..|+++|..+...+.  -+...|..|+...+.     
T Consensus       795 ~~a~li~~~la~~r~f~~sf---D~yLk~Il~~l~e~-~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~-----  865 (1692)
T KOG1020|consen  795 DDAKLIVFYLAHARSFSQSF---DPYLKLILSVLGEN-AIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLN-----  865 (1692)
T ss_pred             hhHHHHHHHHHhhhHHHHhh---HHHHHHHHHHhcCc-hHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhc-----
Confidence            44555666666553333222   46788888888877 88999999999999976554  233344444433322     


Q ss_pred             cCcchhhHHHHHHHHHHH-hCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCH
Q 015939          275 SRTQILTVEKSIKMLSIV-ATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGL  353 (398)
Q Consensus       275 ~~~~~~~~~~al~~L~~L-a~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~  353 (398)
                       +++..|++.|+..+... ...++...++.+      .+.+-+.+.+-.++++++++|..+|-..++=.....     ..
T Consensus       866 -DssasVREAaldLvGrfvl~~~e~~~qyY~------~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~-----~c  933 (1692)
T KOG1020|consen  866 -DSSASVREAALDLVGRFVLSIPELIFQYYD------QIIERILDTGVSVRKRVIKILRDICEETPDFSKIVD-----MC  933 (1692)
T ss_pred             -cchhHHHHHHHHHHhhhhhccHHHHHHHHH------HHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHH-----HH
Confidence             35788999999999863 446666666653      356667778999999999999999987643222222     22


Q ss_pred             HHHHHHHhhcCcHHHHHHHHHHHHHHhcCCCCC
Q 015939          354 TKLLLVMQSENEGIVRKMCGDLVKVLGKASGLG  386 (398)
Q Consensus       354 ~~Ll~~l~~~~~~~~k~~A~~lL~~l~~~~~~~  386 (398)
                      .+++.-+... ...+++-+...+..++=.+|..
T Consensus       934 akmlrRv~DE-Eg~I~kLv~etf~klWF~p~~~  965 (1692)
T KOG1020|consen  934 AKMLRRVNDE-EGNIKKLVRETFLKLWFTPVPE  965 (1692)
T ss_pred             HHHHHHhccc-hhHHHHHHHHHHHHHhccCCCc
Confidence            2444444322 2337888887777776655544

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=86.90  E-value=39  Score=34.49  Aligned_cols=100  Identities=16%  Similarity=0.183  Sum_probs=73.1

Q ss_pred             CChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChh
Q 015939          263 GMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDAR  342 (398)
Q Consensus       263 g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~  342 (398)
                      |.+..+++-+  .+.+..++..++.+|+.+..+-......+. .|.+..|.+-+-+..+.++..|+.+|..+--.+++++
T Consensus        91 ~~~~h~lRg~--eskdk~VR~r~lqila~~~d~v~eIDe~l~-N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee  167 (885)
T COG5218          91 GTFYHLLRGT--ESKDKKVRKRSLQILALLSDVVREIDEVLA-NGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE  167 (885)
T ss_pred             HHHHHHHhcc--cCcchhHHHHHHHHHHHHHHhcchHHHHHH-HHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence            3555666666  346888999999999999876655556653 4888888888888999999999999876654444444


Q ss_pred             HHHHHHhcCCHHHHHHHHhhcCcHHHHHHH
Q 015939          343 VKEAVVNSNGLTKLLLVMQSENEGIVRKMC  372 (398)
Q Consensus       343 ~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A  372 (398)
                      +..       ...|+..+|.+.+.++|+.|
T Consensus       168 n~~-------~n~l~~~vqnDPS~EVRr~a  190 (885)
T COG5218         168 NRI-------VNLLKDIVQNDPSDEVRRLA  190 (885)
T ss_pred             HHH-------HHHHHHHHhcCcHHHHHHHH
Confidence            432       23577778888888888777

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=86.48  E-value=0.29  Score=51.24  Aligned_cols=44  Identities=18%  Similarity=0.514  Sum_probs=33.3

Q ss_pred             cccCccccCC--C---ceec--CCCcccchhHHHHHHhc-CCCCCCcccccC
Q 015939           15 RCPISLDVMK--S---PVSL--CTGVTYDRSSIQHWLES-GHDTCPATMQIL   58 (398)
Q Consensus        15 ~Cpi~~~~~~--d---Pv~~--~~g~~~~r~~i~~~~~~-~~~~CP~~~~~l   58 (398)
                      -|+||.-++.  |   |=-.  +|.|.|--.|+-+|+.. |+.+||.||-.+
T Consensus      1471 ECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRsei 1522 (1525)
T COG5219        1471 ECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522 (1525)
T ss_pred             hhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCcccccc
Confidence            5999988876  1   2222  38899999999999975 566899999543

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=86.28  E-value=0.2  Score=54.19  Aligned_cols=45  Identities=22%  Similarity=0.393  Sum_probs=38.5

Q ss_pred             CCCcccccCccccCC-CceecCCCcccchhHHHHHHhcCCCCCCccc
Q 015939           10 VPNLFRCPISLDVMK-SPVSLCTGVTYDRSSIQHWLESGHDTCPATM   55 (398)
Q Consensus        10 ~~~~~~Cpi~~~~~~-dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~   55 (398)
                      +-..+.|+||+++++ -=.+..|||.||-.|++-|... ...||.|+
T Consensus      1150 ~~~~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~-~s~~~~~k 1195 (1394)
T KOG0298|consen 1150 LSGHFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYA-SSRCPICK 1195 (1394)
T ss_pred             hhcccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHH-hccCcchh
Confidence            345678999999999 6667779999999999999975 66799997

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=86.20  E-value=29  Score=37.16  Aligned_cols=175  Identities=15%  Similarity=0.200  Sum_probs=108.3

Q ss_pred             chhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCC
Q 015939          101 ENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNC  180 (398)
Q Consensus       101 ~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~  180 (398)
                      |..+.+|+..+........  ........|.+..++....  .|.+..+.-.++..|..++..-...  .+.+   ..++
T Consensus       267 WK~R~Eale~l~~~l~e~~--~~~~~~~~~ll~~~~ki~~--kDaN~~v~~~aa~~l~~ia~~lr~~--~~~~---~~~v  337 (815)
T KOG1820|consen  267 WKDRKEALEELVAILEEAK--KEIVKGYTGLLGILLKIRL--KDANINVVMLAAQILELIAKKLRPL--FRKY---AKNV  337 (815)
T ss_pred             hHHHHHHHHHHHHHHhccc--cccccCcchHHHHHHHHhc--cCcchhHHHHHHHHHHHHHHhcchh--hHHH---HHhh
Confidence            6789999999988876533  1222211133333333333  4667777888888888887654432  1222   3467


Q ss_pred             hHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhc-CCc-chHHH
Q 015939          181 LPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLS-VYR-SVKAQ  258 (398)
Q Consensus       181 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls-~~~-~~~~~  258 (398)
                      ++.+++-+...-..++..+..++.....       .....-.++.+...++++ +|..+..+...+-... ..+ .....
T Consensus       338 ~p~lld~lkekk~~l~d~l~~~~d~~~n-------s~~l~~~~~~I~e~lk~k-np~~k~~~~~~l~r~~~~~~~~~~~~  409 (815)
T KOG1820|consen  338 FPSLLDRLKEKKSELRDALLKALDAILN-------STPLSKMSEAILEALKGK-NPQIKGECLLLLDRKLRKLGPKTVEK  409 (815)
T ss_pred             cchHHHHhhhccHHHHHHHHHHHHHHHh-------cccHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHHHhhcCCcCcch
Confidence            7888888877777777766666665544       112244677788889998 8888887666665543 222 22222


Q ss_pred             HHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC
Q 015939          259 LVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT  294 (398)
Q Consensus       259 ~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~  294 (398)
                      -.-.+.++.++...  .+.+.+|+..|..++..+-.
T Consensus       410 ~t~~~l~p~~~~~~--~D~~~~VR~Aa~e~~~~v~k  443 (815)
T KOG1820|consen  410 ETVKTLVPHLIKHI--NDTDKDVRKAALEAVAAVMK  443 (815)
T ss_pred             hhHHHHhHHHhhhc--cCCcHHHHHHHHHHHHHHHH
Confidence            22234677777777  45788888888877776644

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=86.06  E-value=14  Score=37.66  Aligned_cols=121  Identities=12%  Similarity=0.143  Sum_probs=71.7

Q ss_pred             cCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCc-chHHHHHHcCChHH
Q 015939          190 EGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYR-SVKAQLVELGMVQI  267 (398)
Q Consensus       190 ~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~~v~~g~v~~  267 (398)
                      .|+...+.-|+..|.....+ ++..      ..+|..+++|..+. +..++..|++.|..+|.+. +...++     ++.
T Consensus        33 kg~~k~K~Laaq~I~kffk~FP~l~------~~Ai~a~~DLcEDe-d~~iR~~aik~lp~~ck~~~~~v~kv-----aDv  100 (556)
T PF05918_consen   33 KGSPKEKRLAAQFIPKFFKHFPDLQ------EEAINAQLDLCEDE-DVQIRKQAIKGLPQLCKDNPEHVSKV-----ADV  100 (556)
T ss_dssp             GS-HHHHHHHHHHHHHHHCC-GGGH------HHHHHHHHHHHT-S-SHHHHHHHHHHGGGG--T--T-HHHH-----HHH
T ss_pred             cCCHHHHHHHHHHHHHHHhhChhhH------HHHHHHHHHHHhcc-cHHHHHHHHHhHHHHHHhHHHHHhHH-----HHH
Confidence            46788899999999977766 5543      35788999999998 8999999999999999864 566554     568


Q ss_pred             HHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHh---ccChhHHHHHHHHHHH
Q 015939          268 LTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVM---KVGKTAREDAVVVIWS  333 (398)
Q Consensus       268 Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~---~~~~~~~~~a~~~L~~  333 (398)
                      |+++|+.  +++.-....-.+|..|-. ++.         +.+..+..-+.   .+++.+++.++..|..
T Consensus       101 L~QlL~t--dd~~E~~~v~~sL~~ll~~d~k---------~tL~~lf~~i~~~~~~de~~Re~~lkFl~~  159 (556)
T PF05918_consen  101 LVQLLQT--DDPVELDAVKNSLMSLLKQDPK---------GTLTGLFSQIESSKSGDEQVRERALKFLRE  159 (556)
T ss_dssp             HHHHTT-----HHHHHHHHHHHHHHHHH-HH---------HHHHHHHHHHH---HS-HHHHHHHHHHHHH
T ss_pred             HHHHHhc--ccHHHHHHHHHHHHHHHhcCcH---------HHHHHHHHHHHhcccCchHHHHHHHHHHHH
Confidence            9999963  444333333333333332 111         12222222232   3566667777766633

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.04  E-value=0.46  Score=44.52  Aligned_cols=47  Identities=17%  Similarity=0.158  Sum_probs=37.0

Q ss_pred             cccccCccccCCCceecCCCcc-cchhHHHHHHhcCCCCCCcccccCCC
Q 015939           13 LFRCPISLDVMKSPVSLCTGVT-YDRSSIQHWLESGHDTCPATMQILST   60 (398)
Q Consensus        13 ~~~Cpi~~~~~~dPv~~~~g~~-~~r~~i~~~~~~~~~~CP~~~~~l~~   60 (398)
                      .-.|=||..--+|-+++||-|. .|..|-....- ....||+||+++..
T Consensus       290 gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~-q~n~CPICRqpi~~  337 (349)
T KOG4265|consen  290 GKECVICLSESRDTVVLPCRHLCLCSGCAKSLRY-QTNNCPICRQPIEE  337 (349)
T ss_pred             CCeeEEEecCCcceEEecchhhehhHhHHHHHHH-hhcCCCccccchHh
Confidence            4579999999999999999996 47788655532 24569999998754

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=86.04  E-value=4  Score=33.51  Aligned_cols=73  Identities=11%  Similarity=0.055  Sum_probs=60.5

Q ss_pred             cHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhh-----cCcHHHHHHHHHHHHHHhc
Q 015939          308 CAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQS-----ENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       308 ~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~-----~~~~~~k~~A~~lL~~l~~  381 (398)
                      ++..+.+-|..+++.++-.|+.+|..+..+-| .....++...+.+..|+.++..     .....+|++...+++.-++
T Consensus        39 a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG-~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (139)
T cd03567          39 AVRLLAHKIQSPQEKEALQALTVLEACMKNCG-ERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL  116 (139)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC-HHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            45567777888999999999999999887655 6788889999999999999953     2467999999999988777

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=86.01  E-value=3.7  Score=33.43  Aligned_cols=73  Identities=11%  Similarity=0.062  Sum_probs=58.9

Q ss_pred             cHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHH-HHHHHHHHHHHHhc
Q 015939          308 CAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGI-VRKMCGDLVKVLGK  381 (398)
Q Consensus       308 ~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~-~k~~A~~lL~~l~~  381 (398)
                      ++..|-+-|..+++.++-.|+.+|..+..+.+ .....++...+.+..|..++....+.. +|+++..+++.-+.
T Consensus        38 a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg-~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~  111 (133)
T smart00288       38 AVRLLKKRLNNKNPHVALLALTLLDACVKNCG-SKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD  111 (133)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCC-HHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence            34456677778999999999999999888755 677788889999999998886654444 99999888888776

Unpublished observations. Domain of unknown function.

>PF04641 Rtf2: Rtf2 RING-finger

Probab=85.81  E-value=0.65  Score=42.65  Aligned_cols=37  Identities=19%  Similarity=0.385  Sum_probs=32.6

Q ss_pred             CCCCcccccCccccCCCceecC-CCcccchhHHHHHHh
Q 015939            9 AVPNLFRCPISLDVMKSPVSLC-TGVTYDRSSIQHWLE   45 (398)
Q Consensus         9 ~~~~~~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~   45 (398)
                      ..-.|+.|+|+++.|.+||+.. -|+-|.+..|-+|+-
T Consensus        30 ~~~~w~~CaLS~~pL~~PiV~d~~G~LynKeaile~Ll   67 (260)
T PF04641_consen   30 REARWTHCALSQQPLEDPIVSDRLGRLYNKEAILEFLL   67 (260)
T ss_pred             hhCCcCcccCcCCccCCCeeeCCCCeeEcHHHHHHHHH
Confidence            3446889999999999999864 999999999999984

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=85.24  E-value=8.4  Score=40.93  Aligned_cols=149  Identities=14%  Similarity=0.200  Sum_probs=100.5

Q ss_pred             CCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhh-chhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcc-
Q 015939          178 YNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVL-ETENLLSALFDYLKLAEDQALNDAILSILITLSVYRS-  254 (398)
Q Consensus       178 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~-~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~-  254 (398)
                      ..++|.|++.....+...+..=..+|.++..+ +.  ..+. .....+|.|+..|+-+ |..++-.+++++.-+..-.. 
T Consensus       866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~--~vllp~~~~LlPLLLq~Ls~~-D~~v~vstl~~i~~~l~~~~t  942 (1030)
T KOG1967|consen  866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPK--QVLLPQFPMLLPLLLQALSMP-DVIVRVSTLRTIPMLLTESET  942 (1030)
T ss_pred             HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCH--HhhccchhhHHHHHHHhcCCC-ccchhhhHhhhhhHHHHhccc
Confidence            46788888888856677777777888877665 32  3333 3355778888888887 88888888888887653322 


Q ss_pred             hHHHHHHcCChHHHHHHhcccCcc-hhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHH
Q 015939          255 VKAQLVELGMVQILTRILSDSRTQ-ILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVI  331 (398)
Q Consensus       255 ~~~~~v~~g~v~~Lv~lL~~~~~~-~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L  331 (398)
                      -...=++ -.||.++.+=++.+.. ..+++.|+..|..|.. .|..+-.-. ...++..|...|.+....+++.|+++=
T Consensus       943 L~t~~~~-Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~f-r~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen  943 LQTEHLS-TLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSF-RPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred             cchHHHh-HHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccc-cHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence            2221122 2567777766532222 4678899999999998 555443333 236778888888888888888888653

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=84.53  E-value=5  Score=33.11  Aligned_cols=71  Identities=14%  Similarity=0.266  Sum_probs=58.3

Q ss_pred             ChHHHHHHHhcCChhhHHHHHHHHHHhhcC--chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC
Q 015939          180 CLPLFLEILREGNLDSKIGSIKILDSISLD--NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV  251 (398)
Q Consensus       180 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~  251 (398)
                      ++..|..-|.++++.++..|..+|..+..+  ......+.. .+++..|++++++..++.++..++..+.+-+.
T Consensus        42 a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas-~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  114 (142)
T cd03569          42 AMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVAS-REFMDELKDLIKTTKNEEVRQKILELIQAWAL  114 (142)
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhh-HHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence            466677777888999999999999999988  346666665 89999999999866578899999999887763

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=84.39  E-value=0.65  Score=35.21  Aligned_cols=27  Identities=19%  Similarity=0.540  Sum_probs=23.2

Q ss_pred             CCCcccchhHHHHHHhcCCCCCCccccc
Q 015939           30 CTGVTYDRSSIQHWLESGHDTCPATMQI   57 (398)
Q Consensus        30 ~~g~~~~r~~i~~~~~~~~~~CP~~~~~   57 (398)
                      .|+|.|--.||.+|++. +..||.+.+.
T Consensus        80 ~CNHaFH~hCisrWlkt-r~vCPLdn~e  106 (114)
T KOG2930|consen   80 VCNHAFHFHCISRWLKT-RNVCPLDNKE  106 (114)
T ss_pred             ecchHHHHHHHHHHHhh-cCcCCCcCcc
Confidence            49999999999999986 5679998764

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=84.32  E-value=35  Score=33.68  Aligned_cols=186  Identities=18%  Similarity=0.179  Sum_probs=109.5

Q ss_pred             HHHHHHHhhhc-cCCcHHHHHHHHHHHHhhhcccc--hHHHhhHhhhccCCChHHHHHHHhc-CChhhHHHHHHHHHHhh
Q 015939          132 VEAVFGVLNRK-RRSEIAVLESAVRVLNLIVNENG--VKEKLNRLILNTYNCLPLFLEILRE-GNLDSKIGSIKILDSIS  207 (398)
Q Consensus       132 v~~L~~lL~~~-~~~~~~~~~~al~~L~~l~~~~~--~~~~~~~~il~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~L~  207 (398)
                      .+.+..+|... +....+-.+.|+.-|..+.....  ..++...      ..+..++++|+. .+...+.-|.++|+.+.
T Consensus       285 ~~~v~~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~------~iL~~l~EvL~d~~~~~~k~laLrvL~~ml  358 (516)
T KOG2956|consen  285 SALVADLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFA------EILLLLLEVLSDSEDEIIKKLALRVLREML  358 (516)
T ss_pred             hHHHHHHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHH------HHHHHHHHHHccchhhHHHHHHHHHHHHHH
Confidence            34444555432 11123334677775555544332  1122223      346788899987 58888999999999888


Q ss_pred             cCchhHHHhhch-hhHHHHHHHHhccccCHHHHHHHHHH-HHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHH
Q 015939          208 LDNESKRRVLET-ENLLSALFDYLKLAEDQALNDAILSI-LITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKS  285 (398)
Q Consensus       208 ~~~~~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~~a~~a-L~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~a  285 (398)
                      .+...+  +.++ .-+|..+++.-.+. .+++...|... +.-|++.....       .|..+..++..  .|....-.+
T Consensus       359 ~~Q~~~--l~DstE~ai~K~Leaa~ds-~~~v~~~Aeed~~~~las~~P~~-------~I~~i~~~Ilt--~D~~~~~~~  426 (516)
T KOG2956|consen  359 TNQPAR--LFDSTEIAICKVLEAAKDS-QDEVMRVAEEDCLTTLASHLPLQ-------CIVNISPLILT--ADEPRAVAV  426 (516)
T ss_pred             HhchHh--hhchHHHHHHHHHHHHhCC-chhHHHHHHHHHHHHHHhhCchh-------HHHHHhhHHhc--CcchHHHHH
Confidence            874332  2221 33455555554454 45555555544 44555555433       23344445532  455555566


Q ss_pred             HHHHHHHhC--CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhcc
Q 015939          286 IKMLSIVAT--CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCV  337 (398)
Q Consensus       286 l~~L~~La~--~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~  337 (398)
                      +..+..|..  ..+.-..++  ....|.+++.-.+.+..+++.|+-+|..|...
T Consensus       427 iKm~Tkl~e~l~~EeL~~ll--~diaP~~iqay~S~SS~VRKtaVfCLVamv~~  478 (516)
T KOG2956|consen  427 IKMLTKLFERLSAEELLNLL--PDIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR  478 (516)
T ss_pred             HHHHHHHHhhcCHHHHHHhh--hhhhhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence            666666665  334444455  36899999999999999999999999887653

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.00  E-value=26  Score=36.68  Aligned_cols=63  Identities=8%  Similarity=-0.023  Sum_probs=31.7

Q ss_pred             HHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhh
Q 015939           88 RVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLI  160 (398)
Q Consensus        88 ~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l  160 (398)
                      +.....|.+.+.=  .+..|+-++..+-+..    .++  .|++-+.+-.+|....|  +...++|.-.|...
T Consensus       137 p~IracleHrhsY--VRrNAilaifsIyk~~----~~L--~pDapeLi~~fL~~e~D--psCkRNAFi~L~~~  199 (948)
T KOG1058|consen  137 PSIRACLEHRHSY--VRRNAILAIFSIYKNF----EHL--IPDAPELIESFLLTEQD--PSCKRNAFLMLFTT  199 (948)
T ss_pred             HHHHHHHhCcchh--hhhhhheeehhHHhhh----hhh--cCChHHHHHHHHHhccC--chhHHHHHHHHHhc
Confidence            3334445555543  5566665555543221    122  23556666677755333  34557776655543

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=83.54  E-value=5.7  Score=32.84  Aligned_cols=71  Identities=10%  Similarity=0.247  Sum_probs=59.1

Q ss_pred             ChHHHHHHHhcCChhhHHHHHHHHHHhhcC--chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC
Q 015939          180 CLPLFLEILREGNLDSKIGSIKILDSISLD--NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV  251 (398)
Q Consensus       180 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~  251 (398)
                      ++..|..-|.++++.++..|+.+|..+..+  ......+.. ..++..|++++....++.++.-.+..|...+.
T Consensus        38 a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas-k~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~  110 (144)
T cd03568          38 CLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVAS-RDFTQELKKLINDRVHPTVKEKLREVVKQWAD  110 (144)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhh-HHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH
Confidence            466677777888999999999999999988  356667766 89999999999985588899999999988764

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>KOG0396 consensus Uncharacterized conserved protein [Function unknown]

Probab=83.49  E-value=0.93  Score=42.71  Aligned_cols=49  Identities=22%  Similarity=0.358  Sum_probs=41.0

Q ss_pred             ccccCccccCCC---ceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCC
Q 015939           14 FRCPISLDVMKS---PVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKE   62 (398)
Q Consensus        14 ~~Cpi~~~~~~d---Pv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~   62 (398)
                      +.|.|+++.|.|   |++.|.||+|-..+|+.|-....-.||.+++.+....
T Consensus       331 Lvc~isge~md~~N~P~lfpnG~Vyg~~~L~s~~~~~~i~dP~~~k~f~~~~  382 (389)
T KOG0396|consen  331 LVCSISGELMDDDNPPHLFPNGYVYGTKALESLNEDDGIGDPRTKKVFRYSE  382 (389)
T ss_pred             HHhhccccccCCCCCcccccCceeehhHHHHhhcccCCCcCCCCCccccHHH
Confidence            479999999976   9999999999999999997543478999988876543

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=83.36  E-value=32  Score=31.53  Aligned_cols=190  Identities=11%  Similarity=0.079  Sum_probs=103.4

Q ss_pred             HHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccc-cCHHHHHHHHHHHHHhcCCcchHHHHHH
Q 015939          184 FLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLA-EDQALNDAILSILITLSVYRSVKAQLVE  261 (398)
Q Consensus       184 Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~~a~~aL~~Ls~~~~~~~~~v~  261 (398)
                      |-..|.+++...|.+|...|..+... +...  + . ..-+..|+....+. .|......++.+|..|..........+ 
T Consensus         4 Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~--L-~-~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~~-   78 (262)
T PF14500_consen    4 LGEYLTSEDPIIRAKALELLSEVLERLPPDF--L-S-RQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPESA-   78 (262)
T ss_pred             hhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh--c-c-HHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhhH-
Confidence            44567788999999999999876655 4322  1 1 22345555554443 355667777888887764433111110 


Q ss_pred             cCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCH-HHHHHHhhccCcHHHHHHHHhc-cChhHHHHHHHHHHHhhccCC
Q 015939          262 LGMVQILTRILSDSRTQILTVEKSIKMLSIVATCS-EGRLALSEEASCAGRVVERVMK-VGKTAREDAVVVIWSMCCVYK  339 (398)
Q Consensus       262 ~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~-~~~~~i~~~~g~v~~Lv~~l~~-~~~~~~~~a~~~L~~l~~~~~  339 (398)
                      ...+..+.+-..-+.-....+..+..+|..|..+. +.-..+.  .+.+..+++.+.. .+|+.--.+..++..+.....
T Consensus        79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~--~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~  156 (262)
T PF14500_consen   79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMG--DDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFD  156 (262)
T ss_pred             HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhch--hHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcc
Confidence            01222222222111123355667888888876532 3333333  2567777777765 566665555555544422110


Q ss_pred             -------------------------Ch------hHHH----HHHh-----cCCHHHHHHHHhhcCcHHHHHHHHHHHHHH
Q 015939          340 -------------------------DA------RVKE----AVVN-----SNGLTKLLLVMQSENEGIVRKMCGDLVKVL  379 (398)
Q Consensus       340 -------------------------~~------~~~~----~~~~-----~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l  379 (398)
                                               |+      +.+.    .+..     .-++|.|+.-|.++ ++.+|.-+...|..+
T Consensus       157 ~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~-~~~~K~D~L~tL~~c  235 (262)
T PF14500_consen  157 ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDST-SPSVKLDSLQTLKAC  235 (262)
T ss_pred             cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCC-CcHHHHHHHHHHHHH
Confidence                                     11      2222    2221     34578888888777 677888777766655


Q ss_pred             hc
Q 015939          380 GK  381 (398)
Q Consensus       380 ~~  381 (398)
                      ..
T Consensus       236 ~~  237 (262)
T PF14500_consen  236 IE  237 (262)
T ss_pred             HH
Confidence            44

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=82.40  E-value=0.88  Score=41.62  Aligned_cols=43  Identities=23%  Similarity=0.436  Sum_probs=34.1

Q ss_pred             cccccCcccc----CCCceecCCCcccchhHHHHHHhcCCCCCCcccc
Q 015939           13 LFRCPISLDV----MKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQ   56 (398)
Q Consensus        13 ~~~Cpi~~~~----~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~   56 (398)
                      ++-||||.+.    +.+|..++|||+-=..|.++....+ .+||.|..
T Consensus       158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~-y~CP~C~~  204 (276)
T KOG1940|consen  158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEG-YTCPICSK  204 (276)
T ss_pred             cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccC-CCCCcccc
Confidence            4559999875    5678899999987777777776666 89999964

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=81.62  E-value=66  Score=32.91  Aligned_cols=111  Identities=14%  Similarity=0.088  Sum_probs=75.4

Q ss_pred             CCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchH
Q 015939          178 YNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVK  256 (398)
Q Consensus       178 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~  256 (398)
                      .|.+..++..+.+.+..+|.+++.+|..++.. .+.-+.+.  .|.+..|..-+-+. .+.++..|+.+|..+-....|-
T Consensus        90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~--N~L~ekl~~R~~DR-E~~VR~eAv~~L~~~Qe~~~ne  166 (885)
T COG5218          90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLA--NGLLEKLSERLFDR-EKAVRREAVKVLCYYQEMELNE  166 (885)
T ss_pred             HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHH--HHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHhccCCh
Confidence            46778888888888999999999999999877 44444443  57777777666665 6779999999999885433221


Q ss_pred             HHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHH
Q 015939          257 AQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGR  299 (398)
Q Consensus       257 ~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~  299 (398)
                      ...    .+..|+.+++ .+++.++++.|+   .|+..++..+
T Consensus       167 en~----~~n~l~~~vq-nDPS~EVRr~al---lni~vdnsT~  201 (885)
T COG5218         167 ENR----IVNLLKDIVQ-NDPSDEVRRLAL---LNISVDNSTY  201 (885)
T ss_pred             HHH----HHHHHHHHHh-cCcHHHHHHHHH---HHeeeCCCcc
Confidence            111    2346777776 456777777665   4554444333

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=80.94  E-value=1.2  Score=39.61  Aligned_cols=50  Identities=12%  Similarity=0.180  Sum_probs=34.6

Q ss_pred             CCcee-cCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHHh
Q 015939           24 KSPVS-LCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSH   78 (398)
Q Consensus        24 ~dPv~-~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~   78 (398)
                      .||.- +.|+|.||-.|...-.   ...||.|+.++....+.+|  +-..|..++.
T Consensus        15 ~~~f~LTaC~HvfC~~C~k~~~---~~~C~lCkk~ir~i~l~~s--lp~~ik~~F~   65 (233)
T KOG4739|consen   15 QDPFFLTACRHVFCEPCLKASS---PDVCPLCKKSIRIIQLNRS--LPTDIKSYFA   65 (233)
T ss_pred             CCceeeeechhhhhhhhcccCC---ccccccccceeeeeecccc--cchhHHHHcc
Confidence            55554 4699999998865443   2389999999777666666  4555555543

>PF04499 SAPS: SIT4 phosphatase-associated protein; InterPro: IPR007587 The SAPS family consists of proteins that associate with the SIT4 phosphatase protein []

Probab=80.79  E-value=19  Score=36.19  Aligned_cols=124  Identities=18%  Similarity=0.278  Sum_probs=73.1

Q ss_pred             hhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc-hHHHhhHhhhccCCChHHHHHHHhcC-Chh
Q 015939          117 GCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG-VKEKLNRLILNTYNCLPLFLEILREG-NLD  194 (398)
Q Consensus       117 ~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~-~~~~~~~~il~~~g~i~~Lv~lL~~~-~~~  194 (398)
                      ...+.-.++...+++++.+++-++. +    .+.+--++++.   .+.. ........ +.+.+.|+.|+++|+.. +.+
T Consensus         8 k~~e~l~Fik~~~~~v~~llkHI~~-~----~ImDlLLklIs---~d~~~~~~~ilew-L~~q~LI~~Li~~L~p~~~~~   78 (475)
T PF04499_consen    8 KTEEMLEFIKSQPNFVDNLLKHIDT-P----AIMDLLLKLIS---TDKPESPTGILEW-LAEQNLIPRLIDLLSPSYSSD   78 (475)
T ss_pred             CHHHHHHHHHhCccHHHHHHHhcCC-c----HHHHHHHHHHc---cCcccchHHHHHH-HHHhCHHHHHHHHhCCCCCHH
Confidence            3345566777777888777777765 1    12233333332   2221 11112222 55889999999999854 889


Q ss_pred             hHHHHHHHHHHhhcCc--------------hhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhc
Q 015939          195 SKIGSIKILDSISLDN--------------ESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLS  250 (398)
Q Consensus       195 ~~~~a~~~L~~L~~~~--------------~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls  250 (398)
                      .+.+|+.+|..|..-.              .....+.. ...+..|++.+-..........++.++..|-
T Consensus        79 ~q~naa~~L~aII~is~n~~~~~~~~igpn~L~r~L~S-~~~v~~Ll~~mL~~~~~s~lvn~v~IlieLI  147 (475)
T PF04499_consen   79 VQSNAADFLKAIIRISRNAPQNEQSSIGPNPLTRQLVS-EETVEKLLDIMLNSQGGSSLVNGVSILIELI  147 (475)
T ss_pred             HHHHHHHHHHHHHHHhhccccccccCCCccHHHHHHhC-hHHHHHHHHHHhcCCCcchHHHHHHHHHHHH
Confidence            9999999988774321              22333444 5667777765543112446666677766664

This association is required for SIT4's role in G1 cyclin transcription and for bud formation in yeast.

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=80.55  E-value=15  Score=40.22  Aligned_cols=142  Identities=13%  Similarity=0.075  Sum_probs=104.0

Q ss_pred             ChHHHHHHHh----cCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcch
Q 015939          180 CLPLFLEILR----EGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSV  255 (398)
Q Consensus       180 ~i~~Lv~lL~----~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~  255 (398)
                      ..|.+++..+    .++++++..|..+|..+..-.   ..+.  ..-++.|+..+...++|-++.++..++..|+...+|
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS---a~fc--es~l~llftimeksp~p~IRsN~VvalgDlav~fpn  994 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS---AEFC--ESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN  994 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh---HHHH--HHHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence            5566666664    347899999999999776542   1222  234789999998655899999999999999876665


Q ss_pred             HHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhh
Q 015939          256 KAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMC  335 (398)
Q Consensus       256 ~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~  335 (398)
                      -   ++. --+.|...|.  +.++.+++.|+.+|.+|-.+     .++..-|.+..+...+.+++...+.-|=.....|+
T Consensus       995 l---ie~-~T~~Ly~rL~--D~~~~vRkta~lvlshLILn-----dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen  995 L---IEP-WTEHLYRRLR--DESPSVRKTALLVLSHLILN-----DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELS 1063 (1251)
T ss_pred             c---cch-hhHHHHHHhc--CccHHHHHHHHHHHHHHHHh-----hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhh
Confidence            2   222 2355667774  57899999999999999763     33334588999999999999988888876665555


Q ss_pred             cc
Q 015939          336 CV  337 (398)
Q Consensus       336 ~~  337 (398)
                      ..
T Consensus      1064 ~k 1065 (1251)
T KOG0414|consen 1064 SK 1065 (1251)
T ss_pred             hc
Confidence            53

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=80.14  E-value=48  Score=30.41  Aligned_cols=155  Identities=15%  Similarity=0.180  Sum_probs=86.8

Q ss_pred             hhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchH----HHhhHhhhccCCChHHHHHHHhcCC----hhhHH
Q 015939          126 ASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVK----EKLNRLILNTYNCLPLFLEILREGN----LDSKI  197 (398)
Q Consensus       126 ~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~----~~~~~~il~~~g~i~~Lv~lL~~~~----~~~~~  197 (398)
                      ...+|..+.++.=|.+ +.    ..+.++..|..+....++.    .++|-. +.--+.+|.++.-++.++    .+...
T Consensus        60 ~~f~Glq~Ll~KGL~S-s~----t~e~tl~lL~~L~~~~~~~lig~~~~rll-~~~la~LP~ll~~~d~~~~i~~~~~~~  133 (262)
T PF14225_consen   60 GNFEGLQPLLLKGLRS-SS----TYELTLRLLSRLTPLPDDPLIGDSQSRLL-FLLLALLPRLLHAFDDPNPIQPDQECI  133 (262)
T ss_pred             CCchhHHHHHhCccCC-CC----cHHHHHHHHHHHhcCCCccccCCCCccHH-HHHHHHHHHHHHHhcccccccccHHHH
Confidence            3343444444444444 22    3377788888777654421    001111 112234566666666665    12334


Q ss_pred             HHHHHHHHhhcCc-----------------------------hhHHHhh-c-hhhHHHHHHHHhccccCHHHHHHHHHHH
Q 015939          198 GSIKILDSISLDN-----------------------------ESKRRVL-E-TENLLSALFDYLKLAEDQALNDAILSIL  246 (398)
Q Consensus       198 ~a~~~L~~L~~~~-----------------------------~~~~~i~-~-~~g~i~~Lv~lL~~~~~~~~~~~a~~aL  246 (398)
                      ..|..|..++...                             ..+.... + ....+..|+.+|.++ .+..+...+..|
T Consensus       134 ~~A~~La~~a~~~~~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f~P~~~~~~l~~Ll~lL~n~-~~w~~~~~L~iL  212 (262)
T PF14225_consen  134 EIAEALAQVAEAQGLPNLARILSSYAKGRFRDKDDFLSQVVSYLREAFFPDHEFQILTFLLGLLENG-PPWLRRKTLQIL  212 (262)
T ss_pred             HHHHHHHHHHHhCCCccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCC-cHHHHHHHHHHH
Confidence            5667777766542                             1111111 0 124556677778777 667888899999


Q ss_pred             HHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHh
Q 015939          247 ITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVA  293 (398)
Q Consensus       247 ~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La  293 (398)
                      +.+-..-+.+.. ...+.+.++.++|+     .+....|+.+|.+.-
T Consensus       213 ~~ll~~~d~~~~-~~~dlispllrlL~-----t~~~~eAL~VLd~~v  253 (262)
T PF14225_consen  213 KVLLPHVDMRSP-HGADLISPLLRLLQ-----TDLWMEALEVLDEIV  253 (262)
T ss_pred             HHHhccccCCCC-cchHHHHHHHHHhC-----CccHHHHHHHHHHHH
Confidence            988665554433 45557888999985     355667887777653

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	398
1t1h_A	78	Nmr Solution Structure Of The U Box Domain From Atp		8e-17
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		3e-04
2c2v_S	78	Crystal Structure Of The Chip-Ubc13-Uev1a Complex L		3e-04
2f42_A	179	Dimerization And U-Box Domains Of Zebrafish C-Termi		5e-04

>pdb|1T1H|A Chain A, Nmr Solution Structure Of The U Box Domain From Atpub14, An Armadillo Repeat Containing Protein From Arabidopsis Thaliana Length = 78

Iteration: 1
 Score = 84.7 bits (208), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 36/66 (54%), Positives = 44/66 (66%)
Query: 11 PNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLH 70
          P  FRCPISL++MK PV + TG TY+RSSIQ WL++GH TCP + + L      PN  L 
Sbjct: 6  PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLK 65
Query: 71 RLIAHW 76
           LIA W
Sbjct: 66 SLIALW 71

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 10  VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTL 69
           +P+     IS ++M+ P    +G+TYDR  I+  L+      P T   L+ ++ +PNL +
Sbjct: 205 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 264
Query: 70  HRLI 73
             +I
Sbjct: 265 KEVI 268

>pdb|2C2V|S Chain S, Crystal Structure Of The Chip-Ubc13-Uev1a Complex Length = 78

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 10 VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTL 69
          +P+     IS ++M+ P    +G+TYDR  I+  L+      P T   L+ ++ +PNL +
Sbjct: 2  IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 61
Query: 70 HRLI 73
            +I
Sbjct: 62 KEVI 65

>pdb|2F42|A Chain A, Dimerization And U-Box Domains Of Zebrafish C-Terminal Of Hsp70 Interacting Protein Length = 179

Iteration: 1
 Score = 42.4 bits (98), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 10  VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLES-GHDTCPATMQILSTKEFVPNLT 68
           +P+     IS ++M+ P    +G+TYDR  I+  L+  GH   P T   L+  + +PNL 
Sbjct: 103 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGH-FDPVTRSPLTQDQLIPNLA 161
Query: 69  LHRLI 73
           +  +I
Sbjct: 162 MKEVI 166

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	398
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	2e-33
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	5e-30
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	2e-26
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	2e-25
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	9e-24
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	3e-17
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	3e-16
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	2e-12
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	3e-11
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	2e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-06
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	2e-07
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	5e-06
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	9e-06
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	1e-05
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	1e-05
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	2e-05
1z6u_A	150	NP95-like ring finger protein isoform B; structura	6e-05
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	8e-05
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	2e-04
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	3e-04
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	4e-04
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	5e-04
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	8e-04
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	9e-04

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2 Length = 78

 Score =  118 bits (299), Expect = 2e-33
 Identities = 36/67 (53%), Positives = 44/67 (65%)

Query: 10 VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTL 69
           P  FRCPISL++MK PV + TG TY+RSSIQ WL++GH TCP + + L      PN  L
Sbjct: 5  FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 64

Query: 70 HRLIAHW 76
            LIA W
Sbjct: 65 KSLIALW 71

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C Length = 179

 Score =  113 bits (283), Expect = 5e-30
 Identities = 19/67 (28%), Positives = 34/67 (50%)

Query: 10  VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTL 69
           +P+     IS ++M+ P    +G+TYDR  I+  L+      P T   L+  + +PNL +
Sbjct: 103 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAM 162

Query: 70  HRLIAHW 76
             +I  +
Sbjct: 163 KEVIDAF 169

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus} Length = 85

 Score =  100 bits (251), Expect = 2e-26
 Identities = 23/74 (31%), Positives = 31/74 (41%), Gaps = 1/74 (1%)

Query: 3  RQELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKE 62
           +  Y   P+ FR P+   +M  PV L +G   DRS I   L +   T P   Q+L+   
Sbjct: 4  AEIDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSP-TDPFNRQMLTESM 62

Query: 63 FVPNLTLHRLIAHW 76
            P   L   I  W
Sbjct: 63 LEPVPELKEQIQAW 76

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B Length = 100

 Score = 98.2 bits (245), Expect = 2e-25
 Identities = 23/72 (31%), Positives = 29/72 (40%), Gaps = 1/72 (1%)

Query: 5  ELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFV 64
            Y   P+ FR P+   +M  PV L +G   DRS I   L +   T P   Q L+     
Sbjct: 21 IDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSP-TDPFNRQTLTESMLE 79

Query: 65 PNLTLHRLIAHW 76
          P   L   I  W
Sbjct: 80 PVPELKEQIQAW 91

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2 Length = 98

 Score = 93.7 bits (233), Expect = 9e-24
 Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 2/74 (2%)

Query: 4  QELYIAVPNLFRCPISLDVMKSPVSLCTG-VTYDRSSIQHWLESGHDTCPATMQILSTKE 62
          +E Y    + F  PI   +M  PV L +  VT DRS+I   L S   T P     L+  +
Sbjct: 13 EETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQ-TDPFNRSPLTMDQ 71

Query: 63 FVPNLTLHRLIAHW 76
            PN  L   I  W
Sbjct: 72 IRPNTELKEKIQRW 85

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A Length = 968

 Score = 82.9 bits (204), Expect = 3e-17
 Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 2/77 (2%)

Query: 1   MVRQELYIAVPNLFRCPISLDVMKSPVSL-CTGVTYDRSSIQHWLESGHDTCPATMQILS 59
                 Y  VP+ F  P+   +MK PV L  + +  DRS+I+  L S   T P     L 
Sbjct: 879 EEEDLEYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLK 937

Query: 60  TKEFVPNLTLHRLIAHW 76
            ++  PN  L + I  +
Sbjct: 938 LEDVTPNEELRQKILCF 954

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 94

 Score = 72.7 bits (178), Expect = 3e-16
 Identities = 19/82 (23%), Positives = 33/82 (40%), Gaps = 9/82 (10%)

Query: 14 FRCPISLDVMKSPV-SLCTGVTYDRSSIQHWLESGHD-----TCPAT---MQILSTKEFV 64
          F CPI+ + MK PV +   G TY+  +I   +ES         CP        +   + +
Sbjct: 8  FTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLI 67

Query: 65 PNLTLHRLIAHWSHQLTVPEQE 86
           +  L R I + + +     + 
Sbjct: 68 QDEALRRAIENHNKKRHRHSES 89

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 66.5 bits (162), Expect = 2e-12
 Identities = 19/67 (28%), Positives = 35/67 (52%)

Query: 10  VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTL 69
           +P+     IS ++M+ P    +G+TYDR  I+  L+      P T   L+ ++ +PNL +
Sbjct: 205 IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 264

Query: 70  HRLIAHW 76
             +I  +
Sbjct: 265 KEVIDAF 271

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A Length = 61

 Score = 57.4 bits (139), Expect = 3e-11
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 2/53 (3%)

Query: 14 FRCPISLDVMKSPV-SLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVP 65
            C IS  V + PV S  +   +++S ++ +++      P T + LS +E V 
Sbjct: 4  MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVE 55

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae} Length = 267

 Score = 60.4 bits (145), Expect = 2e-10
 Identities = 16/77 (20%), Positives = 34/77 (44%), Gaps = 4/77 (5%)

Query: 14  FRCPISLDVMKSPV-SLCTGVTYDRSSIQHWLE-SGHDTCPAT--MQILSTKEFVPNLTL 69
             CPI+    ++P+ S      +DR  IQ++L+      CP     Q++S ++FV +  +
Sbjct: 182 LTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIM 241

Query: 70  HRLIAHWSHQLTVPEQE 86
                    + +  + +
Sbjct: 242 ELRCKIAKMKESQEQDK 258

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 7e-08
 Identities = 79/439 (17%), Positives = 131/439 (29%), Gaps = 127/439 (28%)

Query: 14  FRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILST---------KEFV 64
           F C    D+ KS +S        +  I H + S       T+++  T         ++FV
Sbjct: 33  FDCKDVQDMPKSILS--------KEEIDHIIMSKDAV-SGTLRLFWTLLSKQEEMVQKFV 83

Query: 65  -----PNLTLHRLIAHWSHQLTVPEQEVRVWIEKIKSENESENSCVDYLV----KVAKFA 115
                 N     L++    +   P    R++IE+             Y V       K  
Sbjct: 84  EEVLRINYKF--LMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLR 141

Query: 116 TG-CEANR-RFLASYG--GF------VEAV----------FGV--LN-RKRRSEIAVLES 152
               E    + +   G  G       ++            F +  LN +   S   VLE 
Sbjct: 142 QALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM 201

Query: 153 AVRVL---------------NLIVNENGVKEKLNRLILNT-Y-NCLPLFL------EILR 189
             ++L               N+ +  + ++ +L RL+ +  Y NCL L L      +   
Sbjct: 202 LQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-LVLLNVQNAKAWN 260

Query: 190 EGNLDSKI----GSIKILDSISLDNESKRRV------LETENLLSALFDYLKLAED---- 235
             NL  KI       ++ D +S    +   +      L  + + S L  YL         
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 236 QALNDAILSI-LITLSVYRSVKAQLVELGMVQI--LTRILSDSRTQILTVE--KSIKMLS 290
           + L      + +I  S+ R   A       V    LT I+  S   +   E  K    LS
Sbjct: 321 EVLTTNPRRLSIIAESI-RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379

Query: 291 IVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNS 350
           +              A     +   ++            +IW              VVN 
Sbjct: 380 V----------FPPSA----HIPTILL-----------SLIWF----DVIKSDVMVVVNK 410

Query: 351 NGLTKLLLVMQSENEGIVR 369
             L K  LV +   E  + 
Sbjct: 411 --LHKYSLVEKQPKESTIS 427

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 8e-06
 Identities = 59/344 (17%), Positives = 104/344 (30%), Gaps = 99/344 (28%)

Query: 12  NLFRCPISLDVMKSPVSLCTG-----------VTYDRSSIQHWLESGHDTCPATMQILST 60
           +L    +       P  + T            +    ++  +W     D     ++  S 
Sbjct: 305 SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES-SL 363

Query: 61  KEFVPNLTLHRLIAHWSHQLTV-------PEQE-VRVWIEKIKSENESE-NSCVDY-LVK 110
               P             +L+V       P      +W + IKS+     N    Y LV+
Sbjct: 364 NVLEPAEYRKMF-----DRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVE 418

Query: 111 VAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKL 170
                   +     ++    ++E     L  K  +E A                     L
Sbjct: 419 -------KQPKESTISIPSIYLE-----LKVKLENEYA---------------------L 445

Query: 171 NRLILNTYNCLPLFLEILREGNLDSKIGSIKILDS-----IS--LDNESKRRVLETENLL 223
           +R I++ YN       I +    DS       LD      I   L N       E   L 
Sbjct: 446 HRSIVDHYN-------IPK--TFDSDDLIPPYLDQYFYSHIGHHLKNIEH---PERMTLF 493

Query: 224 SALF-DY----LKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQ 278
             +F D+     K+  D    +A  SIL TL   +  K  + +        R+++     
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICD--NDPKYERLVNAILDF 551

Query: 279 ILTVEKSI---KMLSIVATCSEGRLALSEEASC----AGRVVER 315
           +  +E+++   K   ++      R+AL  E       A + V+R
Sbjct: 552 LPKIEENLICSKYTDLL------RIALMAEDEAIFEEAHKQVQR 589

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens} Length = 92

 Score = 47.8 bits (114), Expect = 2e-07
 Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 3/70 (4%)

Query: 10 VPNLFRCPISLDVMKSPVSL-CTGVTYDRSSIQ-HWLESGHDTCPATMQILSTK-EFVPN 66
          +P+   C I  D+M   V + C G +Y    I+   LES   TCP   Q   +    + N
Sbjct: 10 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIAN 69

Query: 67 LTLHRLIAHW 76
            L + + ++
Sbjct: 70 KFLRQAVNNF 79

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 44.4 bits (105), Expect = 5e-06
 Identities = 14/64 (21%), Positives = 26/64 (40%)

Query: 10 VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTL 69
          + + + CPI L  ++  V    G  + ++ I   +      CP   +IL   +  P+   
Sbjct: 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFA 74

Query: 70 HRLI 73
           R I
Sbjct: 75 KREI 78

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 45.7 bits (109), Expect = 9e-06
 Identities = 31/194 (15%), Positives = 78/194 (40%), Gaps = 8/194 (4%)

Query: 143 RRSEIAVLESAVRVL-NLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIK 201
                 +L+ A+  L N+    N       + +++    LP  +++L   N      ++ 
Sbjct: 64  SSPNEQILQEALWALSNIASGGNEQI----QAVID-AGALPALVQLLSSPNEQILQEALW 118

Query: 202 ILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVE 261
            L +I+     + + +     L AL   L    +Q L +A+ ++    S        +++
Sbjct: 119 ALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID 178

Query: 262 LGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGK 321
            G +  L ++LS    QI  +++++  LS +A+    +    +EA    ++ +      +
Sbjct: 179 AGALPALVQLLSSPNEQI--LQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENE 236

Query: 322 TAREDAVVVIWSMC 335
             +++A   +  + 
Sbjct: 237 KIQKEAQEALEKLQ 250

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 43.0 bits (101), Expect = 1e-05
 Identities = 9/63 (14%), Positives = 21/63 (33%), Gaps = 1/63 (1%)

Query: 14  FRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTK-EFVPNLTLHRL 72
           F+C    +++  P++        +  +     +   +CPA    L        N  L  +
Sbjct: 53  FQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTV 112

Query: 73  IAH 75
           +  
Sbjct: 113 LNQ 115

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 41.7 bits (98), Expect = 1e-05
 Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 10 VPNLFRCPISLDVMKSPVSL-CTGVTYDRSSIQ-HWLESGHDTCP 52
          +P+   C I  D+M   V + C G +Y    I+   LES   TCP
Sbjct: 12 IPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCP 56

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 42.4 bits (100), Expect = 2e-05
 Identities = 13/70 (18%), Positives = 25/70 (35%), Gaps = 4/70 (5%)

Query: 10 VPNLFRCPISLDVMKSPVSL--CTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNL 67
          + +L RC I  +     + +  C    Y    I+ +L      CP     ++  +   N 
Sbjct: 19 IDDLLRCGICFEYFNIAMIIPQC-SHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNR 76

Query: 68 TLHRLIAHWS 77
           L  L+   +
Sbjct: 77 ILDELVKSLN 86

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 41.9 bits (98), Expect = 6e-05
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 14  FRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTK-EFVPNLTLHRL 72
           F C    +++  PV+        +  +Q   ++   +CPA    L      +PN  L  L
Sbjct: 79  FMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTL 138

Query: 73  I 73
           +
Sbjct: 139 L 139

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 40.6 bits (95), Expect = 8e-05
 Identities = 15/81 (18%), Positives = 25/81 (30%), Gaps = 2/81 (2%)

Query: 10 VPNLFRCPISLDVMKSPVSLCT-GVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLT 68
          +  +FRC I ++ ++              S I+ WL      CP     L  +E V    
Sbjct: 19 IAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRW 78

Query: 69 LHRLIAHWSH-QLTVPEQEVR 88
             +       QL    +   
Sbjct: 79 AEEVTQQLDTLQLCSLTKHEE 99

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B Length = 165

 Score = 40.3 bits (94), Expect = 2e-04
 Identities = 17/64 (26%), Positives = 30/64 (46%), Gaps = 4/64 (6%)

Query: 14  FRCPISLDVMKSPVSL--CTGVTYDRSSIQHWLESGHDTCPA-TMQILSTKEFVPNLTLH 70
             CPI LD++K+ ++   C    +    I   L SG+  CP    +++S +   P+    
Sbjct: 55  LMCPICLDMLKNTMTTKEC-LHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFD 113

Query: 71  RLIA 74
            LI+
Sbjct: 114 ALIS 117

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus} Length = 85

 Score = 38.1 bits (89), Expect = 3e-04
 Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 14 FRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDT-----CPATMQILSTKEFVPNLT 68
            CPI L+++K PVS     ++ R+ I    ES  +T     CP            PNL 
Sbjct: 20 VTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLH 79

Query: 69 LHRLI 73
          +  ++
Sbjct: 80 VANIV 84

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 37.5 bits (87), Expect = 4e-04
 Identities = 11/53 (20%), Positives = 20/53 (37%)

Query: 10 VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKE 62
          V + ++C     V+ SP     G  +  S +   L S    C A  + +   +
Sbjct: 12 VEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDK 64

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 39.7 bits (92), Expect = 5e-04
 Identities = 14/64 (21%), Positives = 26/64 (40%)

Query: 10 VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTL 69
          + + + CPI L  ++  V    G  + ++ I   +      CP   +IL   +  P+   
Sbjct: 15 LESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFA 74

Query: 70 HRLI 73
           R I
Sbjct: 75 KREI 78

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 38.6 bits (89), Expect = 8e-04
 Identities = 13/79 (16%), Positives = 24/79 (30%)

Query: 10  VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTL 69
           +   + C    +V++ P     G  Y    +   L SG   C A +     +E +  L  
Sbjct: 28  LEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILES 87

Query: 70  HRLIAHWSHQLTVPEQEVR 88
                  + +  V      
Sbjct: 88  SSAFPDNAARREVESLPAV 106

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 36.7 bits (85), Expect = 9e-04
 Identities = 9/41 (21%), Positives = 13/41 (31%), Gaps = 1/41 (2%)

Query: 12 NLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCP 52
           +  C I L     PVSL     +    ++     G   C 
Sbjct: 14 TVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGK-RCA 53

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	398
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.97
3nmz_A	458	APC variant protein; protein-protein complex, arma	99.96
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.96
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.96
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.95
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	99.95
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	99.95
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	99.95
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	99.95
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	99.95
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.95
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	99.95
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.94
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.94
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.94
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	99.94
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.93
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.93
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.93
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.92
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	99.92
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.92
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.92
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.92
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.91
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.91
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.9
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.9
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.9
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.89
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.89
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.88
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	99.88
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	99.87
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	99.87
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.87
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.86
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.85
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.84
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	99.83
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.82
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	99.79
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.77
3grl_A	651	General vesicular transport factor P115; vesicle t	99.76
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	99.7
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	99.66
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	99.63
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	99.63
1z6u_A	150	NP95-like ring finger protein isoform B; structura	99.6
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	99.58
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.57
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	99.56
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.56
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.54
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.54
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.53
3grl_A	651	General vesicular transport factor P115; vesicle t	99.53
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.53
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	99.53
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.53
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.53
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.52
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.52
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.52
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.5
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	99.5
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	99.49
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.46
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	99.45
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	99.44
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	99.44
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	99.43
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	99.38
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	99.38
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.35
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.34
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.33
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	99.33
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.28
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.26
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.26
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.21
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.17
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	99.17
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.17
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.17
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.16
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.15
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.15
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.14
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.12
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.11
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.1
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.09
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.07
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.06
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	99.06
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.03
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	99.03
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.02
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.02
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.95
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.9
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	98.87
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	98.84
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.82
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.79
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.77
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.76
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.75
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.74
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	98.71
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.71
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.69
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.65
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.63
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	98.59
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.54
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	98.53
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.48
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.42
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.39
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	98.36
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	98.34
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.33
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	98.31
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.28
1qgr_A	876	Protein (importin beta subunit); transport recepto	98.27
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	98.25
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	98.24
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.21
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.18
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.12
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.09
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.08
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.06
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.04
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.04
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.0
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	97.86
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	97.82
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.71
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	97.65
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.58
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.44
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.44
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	97.43
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	97.39
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	97.31
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.27
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	97.16
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	96.98
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.97
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	96.74
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	96.72
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	96.7
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.67
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	96.63
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	96.31
3i2d_A	371	E3 SUMO-protein ligase SIZ1; signal transduction,	96.18
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	96.17
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	95.9
4fo9_A	360	E3 SUMO-protein ligase PIAS2; E3 ligase, pinit dom	95.66
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.56
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	95.38
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	95.13
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	94.35
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	94.3
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	94.17
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	93.99
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	93.68
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	93.61
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	93.53
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	93.42
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	93.35
2x1g_F	971	Cadmus; transport protein, developmental protein,	93.05
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	92.64
3nw0_A	238	Non-structural maintenance of chromosomes element	92.55
2x1g_F	971	Cadmus; transport protein, developmental protein,	92.12
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	92.02
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	91.91
2x19_B	963	Importin-13; nuclear transport, protein transport;	91.65
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	90.91
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	90.78
2x19_B	963	Importin-13; nuclear transport, protein transport;	90.07
1weo_A	93	Cellulose synthase, catalytic subunit (IRX3); stru	89.48
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	88.23
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	88.22
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	88.0
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	85.76
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	85.45
3zyq_A	226	Hepatocyte growth factor-regulated tyrosine kinas	85.38
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	85.18
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	84.76
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	83.72
2jvx_A	28	NF-kappa-B essential modulator; CCHC classical zin	83.56
1dvp_A	220	HRS, hepatocyte growth factor-regulated tyrosine k	82.07
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	81.68
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	81.46
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	81.45
2jne_A	101	Hypothetical protein YFGJ; zinc fingers, two zinc,	80.85
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	80.83
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	80.55
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	80.52
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	80.37
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	80.11

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=7.9e-33  Score=263.79  Aligned_cols=269  Identities=16%  Similarity=0.201  Sum_probs=232.3

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhc--------cCCcHHHHHHHHHHHHhhhcccchHHHhhHhh
Q 015939          103 SCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRK--------RRSEIAVLESAVRVLNLIVNENGVKEKLNRLI  174 (398)
Q Consensus       103 ~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~--------~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~i  174 (398)
                      ....|++.|.+++.+ +++|+.|.+. |+++.|+.+|.+.        ...+..++++|+++|.+|+.+++.   +|..|
T Consensus        48 ~~~~A~~aL~nls~d-~e~R~~i~~~-G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~---~k~~i  122 (354)
T 3nmw_A           48 QICPAVCVLMKLSFD-EEHRHAMNEL-GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA---NKATL  122 (354)
T ss_dssp             THHHHHHHHHHHHTS-HHHHHHHHHT-THHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHH---HHHHH
T ss_pred             HHHHHHHHHHHHcCC-HHHHHHHHHc-CCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHH---HHHHH
Confidence            566899999999976 7899999999 9999999999631        112356789999999999987664   35653


Q ss_pred             hccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC--chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC-
Q 015939          175 LNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD--NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV-  251 (398)
Q Consensus       175 l~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-  251 (398)
                      ....|+||.|+.+|++++.++++.|+++|++|+..  +++|..+.+ .|++++|+++|....++++++.|+.+|+||+. 
T Consensus       123 ~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~-~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~  201 (354)
T 3nmw_A          123 CSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLRE-VGSVKALMECALEVKKESTLKSVLSALWNLSAH  201 (354)
T ss_dssp             HHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHH-TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTT
T ss_pred             HHcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHH-CCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHcc
Confidence            34567799999999999999999999999999984  578999987 89999999986443378899999999999998 


Q ss_pred             CcchHHHHH-HcCChHHHHHHhcccCcch--hhHHHHHHHHHHHhC----CHHHHHHHhhccCcHHHHHHHHhccChhHH
Q 015939          252 YRSVKAQLV-ELGMVQILTRILSDSRTQI--LTVEKSIKMLSIVAT----CSEGRLALSEEASCAGRVVERVMKVGKTAR  324 (398)
Q Consensus       252 ~~~~~~~~v-~~g~v~~Lv~lL~~~~~~~--~~~~~al~~L~~La~----~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~  324 (398)
                      +++++..++ ..|+++.|+++|++.+...  ++++.|+++|++|+.    ++++++.+. +.|+++.|+.+|.+++..++
T Consensus       202 ~~~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~v~  280 (354)
T 3nmw_A          202 CTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR-ENNCLQTLLQHLKSHSLTIV  280 (354)
T ss_dssp             CHHHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH-TTTHHHHHHHHTTCSCHHHH
T ss_pred             ChhhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHH-HcCCHHHHHHHHcCCChHHH
Confidence            668999998 7999999999996422111  589999999999995    899999888 57999999999999999999


Q ss_pred             HHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          325 EDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       325 ~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      ++|+++|++++..  +++.+..+++.|+++.|+.+|+++ ++++|+.|+++|..|..
T Consensus       281 ~~A~~aL~nLa~~--~~~~~~~i~~~G~i~~Lv~LL~s~-~~~i~~~A~~aL~nL~~  334 (354)
T 3nmw_A          281 SNACGTLWNLSAR--NPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMA  334 (354)
T ss_dssp             HHHHHHHHHHTSS--CHHHHHHHHHTTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCC--CHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHc
Confidence            9999999999964  378899999999999999999877 89999999999999998

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=3.6e-31  Score=259.65  Aligned_cols=267  Identities=17%  Similarity=0.200  Sum_probs=230.0

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhc--------cCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhc
Q 015939          105 VDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRK--------RRSEIAVLESAVRVLNLIVNENGVKEKLNRLILN  176 (398)
Q Consensus       105 ~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~--------~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~  176 (398)
                      .+|++.|.+++. ++++|+.|.+. |++++|+.+|...        ...+..++++|+++|.||+.+++.   +|..+..
T Consensus       166 ~qAv~aL~nls~-~~e~R~~i~~~-G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~---~k~~i~~  240 (458)
T 3nmz_A          166 CPAVCVLMKLSF-DEEHRHAMNEL-GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVA---NKATLCS  240 (458)
T ss_dssp             HHHHHHHHHHTT-SHHHHHHHHHT-THHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHH---HHHHHHH
T ss_pred             HHHHHHHHHhcC-CHHHHHHHHHC-CCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcc---cHHHHHH
Confidence            389999999964 49999999999 9999999999531        112356789999999999987664   3555333


Q ss_pred             cCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC--chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC-Cc
Q 015939          177 TYNCLPLFLEILREGNLDSKIGSIKILDSISLD--NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV-YR  253 (398)
Q Consensus       177 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~  253 (398)
                      ..|+||.|+.+|++++.++++.|+++|++|+..  +++|..+.+ .|++++|+++|....++++++.++.+|+||+. ++
T Consensus       241 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~-~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~  319 (458)
T 3nmz_A          241 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLRE-VGSVKALMECALEVKKESTLKSVLSALWNLSAHCT  319 (458)
T ss_dssp             CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHH-TTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCH
T ss_pred             cCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHH-cCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCH
Confidence            567799999999999999999999999999984  578899987 89999999986443378899999999999998 77


Q ss_pred             chHHHHH-HcCChHHHHHHhcccCcch--hhHHHHHHHHHHHh----CCHHHHHHHhhccCcHHHHHHHHhccChhHHHH
Q 015939          254 SVKAQLV-ELGMVQILTRILSDSRTQI--LTVEKSIKMLSIVA----TCSEGRLALSEEASCAGRVVERVMKVGKTARED  326 (398)
Q Consensus       254 ~~~~~~v-~~g~v~~Lv~lL~~~~~~~--~~~~~al~~L~~La----~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~  326 (398)
                      +++..++ ..|+++.|+++|.+.+...  .+++.|+++|+||+    .++++++.+. +.|+++.|+.+|.+++..++++
T Consensus       320 ~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~-~~G~i~~Lv~LL~~~~~~v~~~  398 (458)
T 3nmz_A          320 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR-ENNCLQTLLQHLKSHSLTIVSN  398 (458)
T ss_dssp             HHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHHHSSCSCHHHHHH
T ss_pred             HHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHH-HcccHHHHHHHHcCCChHHHHH
Confidence            8999998 7999999999996422111  48999999999999    4889999988 5799999999999999999999


Q ss_pred             HHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          327 AVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       327 a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      |+++|++++..  +++.+..+++.|+++.|+.+|+++ ++++|+.|+++|..|..
T Consensus       399 A~~aL~nLa~~--~~~~~~~i~~~G~I~~Lv~LL~s~-~~~v~~~Aa~AL~nL~~  450 (458)
T 3nmz_A          399 ACGTLWNLSAR--NPKDQEALWDMGAVSMLKNLIHSK-HKMIAMGSAAALRNLMA  450 (458)
T ss_dssp             HHHHHHHHHSS--CHHHHHHHHHHTHHHHHHTTTTCS-SHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHHc
Confidence            99999999964  378899999999999999999877 89999999999999987

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.97  E-value=9.6e-29  Score=244.79  Aligned_cols=282  Identities=15%  Similarity=0.118  Sum_probs=233.5

Q ss_pred             HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc
Q 015939           86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG  165 (398)
Q Consensus        86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~  165 (398)
                      .++.+++.|++++.+  .+..|+..|++++.+++.++..+.+. |++|.|+.+|++ .+  ..+++.|+++|.+|+.+.+
T Consensus         3 ~l~~lv~~L~s~~~~--~q~~A~~~L~~l~~~~~~~~~~i~~~-g~i~~Lv~lL~s-~~--~~~~~~A~~aL~nLa~~~~   76 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEK--YQAIGAYYIQHTCFQDESAKQQVYQL-GGICKLVDLLRS-PN--QNVQQAAAGALRNLVFRST   76 (457)
T ss_dssp             CHHHHHHHHHSSCTH--HHHHHHHHHHHHTSSCSSHHHHHHHT-THHHHHHHHTTS-SC--HHHHHHHHHHHHHHHSSCH
T ss_pred             CHHHHHHHHCCCCHH--HHHHHHHHHHHHHcCChHHHHHHHHc-CCHHHHHHHHcC-CC--HHHHHHHHHHHHHHhcCCH
Confidence            367899999988765  89999999999998888888899999 999999999998 43  4567999999999998644


Q ss_pred             hHHHhhHhhhccCCChHHHHHHHh-cCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhc--------cc---
Q 015939          166 VKEKLNRLILNTYNCLPLFLEILR-EGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLK--------LA---  233 (398)
Q Consensus       166 ~~~~~~~~il~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~--------~~---  233 (398)
                      .   +|.. +.+.|++|.|+++|+ +++.++++.|+++|.+|+.++++|..+..  |++++|+++|.        +.   
T Consensus        77 ~---~k~~-i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~--g~i~~Lv~ll~~~~s~~~~~~~~~  150 (457)
T 1xm9_A           77 T---NKLE-TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA--DALPVLADRVIIPFSGWCDGNSNM  150 (457)
T ss_dssp             H---HHHH-HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH--HHHHHHHHHTTHHHHTCC------
T ss_pred             H---HHHH-HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh--ccHHHHHHHHhccccccccCccch
Confidence            3   4666 779999999999999 88999999999999999999899998875  99999999993        22   


Q ss_pred             ----cCHHHHHHHHHHHHHhcCCcchHHHHHHc-CChHHHHHHhccc----CcchhhHHHHHHHHHHHhCCHH-------
Q 015939          234 ----EDQALNDAILSILITLSVYRSVKAQLVEL-GMVQILTRILSDS----RTQILTVEKSIKMLSIVATCSE-------  297 (398)
Q Consensus       234 ----~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~-g~v~~Lv~lL~~~----~~~~~~~~~al~~L~~La~~~~-------  297 (398)
                          .++++++.|+++|+||+.+++++..+++. |+++.|+.+|++.    ..+.++++.|+.+|++|+...+       
T Consensus       151 ~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~  230 (457)
T 1xm9_A          151 SREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRY  230 (457)
T ss_dssp             ---CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHH
T ss_pred             hcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchh
Confidence                24567779999999999988899999997 9999999999631    1356799999999999973211       


Q ss_pred             --------------------------------------------HHHHHhhccCcHHHHHHHHhc-cChhHHHHHHHHHH
Q 015939          298 --------------------------------------------GRLALSEEASCAGRVVERVMK-VGKTAREDAVVVIW  332 (398)
Q Consensus       298 --------------------------------------------~~~~i~~~~g~v~~Lv~~l~~-~~~~~~~~a~~~L~  332 (398)
                                                                  +.+.+. +.|+++.|+.+|.. .++..++.|+++|+
T Consensus       231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~l~~L~~lL~~~~~~~~~e~a~~aL~  309 (457)
T 1xm9_A          231 RQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLY-HSDAIRTYLNLMGKSKKDATLEACAGALQ  309 (457)
T ss_dssp             HHHHHTC----------------------------CCCCCSSCCGGGGGG-SHHHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             hhcccccccccccccccchhhccchhhhhccccCCccccccCchHHHHHh-CcchHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence                                                        112233 46789999999986 57899999999999


Q ss_pred             HhhccCCCh--hHHHHHH-hcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          333 SMCCVYKDA--RVKEAVV-NSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       333 ~l~~~~~~~--~~~~~~~-~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      +|+......  ...+.++ +.|+++.|+.+|+++ +.++|+.|+++|+.++.
T Consensus       310 nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~-~~~v~~~A~~aL~nls~  360 (457)
T 1xm9_A          310 NLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSR  360 (457)
T ss_dssp             HHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHT
T ss_pred             HhccCcCcchHHHHHHHHHHcCCchHHHHHHhCC-CHhHHHHHHHHHHHHhc
Confidence            999754321  2213344 689999999999887 89999999999999987

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=99.96  E-value=2.6e-28  Score=239.45  Aligned_cols=288  Identities=15%  Similarity=0.152  Sum_probs=235.5

Q ss_pred             HHHHHHHHHHHcCCC----------CchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcH----------HHHHHHhhhcc-
Q 015939           85 QEVRVWIEKIKSENE----------SENSCVDYLVKVAKFATGCEANRRFLASYGGFV----------EAVFGVLNRKR-  143 (398)
Q Consensus        85 ~~i~~l~~~l~~~~~----------~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v----------~~L~~lL~~~~-  143 (398)
                      +-++.|++.|+..+.          +.+.+.+|+++|.+++.+.+...+...+. |++          +.++.++.+.. 
T Consensus        70 g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~  148 (458)
T 3nmz_A           70 GCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREI-RVLHLLEQIRAYCETCWEWQEAHEP  148 (458)
T ss_dssp             TCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHSCSCHHHHHHH-HHHHHHHHHHHHHHHHHHHHTTTSS
T ss_pred             CCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccCcchhHHHHHH-HHHHHHHHhhhhhHHHHHHHHhhcc
Confidence            346788999986432          24688999999999999988877777777 777          66677776521 


Q ss_pred             CCc-----H-----HHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhc-----------CChhhHHHHHHH
Q 015939          144 RSE-----I-----AVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILRE-----------GNLDSKIGSIKI  202 (398)
Q Consensus       144 ~~~-----~-----~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~~  202 (398)
                      +.+     .     +.+.+|+++|.|++.+.    ++|.. +.+.|+++.|+.+|..           .+..++.+|+++
T Consensus       149 ~~~~~~~~~~~~~~~~~~qAv~aL~nls~~~----e~R~~-i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~a  223 (458)
T 3nmz_A          149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDE----EHRHA-MNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMA  223 (458)
T ss_dssp             SSCCCSCC--CCCTTTTHHHHHHHHHHTTSH----HHHHH-HHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred             ccccccCCccchhhHHHHHHHHHHHHhcCCH----HHHHH-HHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHH
Confidence            111     1     11238999999997653    35777 7799999999999952           246789999999


Q ss_pred             HHHhhcCch-hHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCC--cchHHHHHHcCChHHHHHHhcccCcch
Q 015939          203 LDSISLDNE-SKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVY--RSVKAQLVELGMVQILTRILSDSRTQI  279 (398)
Q Consensus       203 L~~L~~~~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~--~~~~~~~v~~g~v~~Lv~lL~~~~~~~  279 (398)
                      |.+|+.+++ ++..+....|+|++|+.+|+++ +++++..|+++|++|+..  ++++..+++.|+|+.|+++|. .+.++
T Consensus       224 L~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~-~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl-~s~~~  301 (458)
T 3nmz_A          224 LTNLTFGDVANKATLCSMKGCMRALVAQLKSE-SEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECAL-EVKKE  301 (458)
T ss_dssp             HHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCS-CHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHT-TCCSH
T ss_pred             HHHHhCCCcccHHHHHHcCCcHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHh-cCCCH
Confidence            999998854 7777754367799999999988 899999999999999974  468899999999999999864 23578


Q ss_pred             hhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccCh----hHHHHHHHHHHHhhcc-CCChhHHHHHHhcCCH
Q 015939          280 LTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGK----TAREDAVVVIWSMCCV-YKDARVKEAVVNSNGL  353 (398)
Q Consensus       280 ~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~----~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~g~~  353 (398)
                      .+++.|+.+|.||+. +++++..+....|+++.|+.+|..+++    .++++|+++|++|+.. .++++.+..+++.|++
T Consensus       302 ~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~G~i  381 (458)
T 3nmz_A          302 STLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCL  381 (458)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHHHcccH
Confidence            999999999999999 889999998668999999999987654    4899999999999962 1236889999999999


Q ss_pred             HHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          354 TKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       354 ~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      +.|+.+|+++ +..+++.|+++|.+++.
T Consensus       382 ~~Lv~LL~~~-~~~v~~~A~~aL~nLa~  408 (458)
T 3nmz_A          382 QTLLQHLKSH-SLTIVSNACGTLWNLSA  408 (458)
T ss_dssp             HHHHHHSSCS-CHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHcCC-ChHHHHHHHHHHHHHHc
Confidence            9999999876 78999999999999984

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.96  E-value=1.1e-27  Score=240.02  Aligned_cols=284  Identities=15%  Similarity=0.132  Sum_probs=232.4

Q ss_pred             HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939           85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN  164 (398)
Q Consensus        85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~  164 (398)
                      ..++.+++.|.+++.+  .+..|+..|++++..++.+|..+.+. |+||.|+.+|++ .+  ..++++|+++|.||+..+
T Consensus        48 ~~i~~LV~~L~s~~~~--~q~~Aa~~L~~La~~~~~~k~~V~~~-G~Ip~LV~LL~s-~~--~~vq~~Aa~AL~nLa~~~  121 (584)
T 3l6x_A           48 PELPEVIAMLGFRLDA--VKSNAAAYLQHLCYRNDKVKTDVRKL-KGIPVLVGLLDH-PK--KEVHLGACGALKNISFGR  121 (584)
T ss_dssp             CCHHHHHHHTTCSCHH--HHHHHHHHHHHHHTTCHHHHHHHHHT-THHHHHHHGGGC-SS--HHHHHHHHHHHHHHTSSS
T ss_pred             ccHHHHHHHHCCCCHH--HHHHHHHHHHHHHcCChHHHHHHHHc-CCcHHHHHHHCC-CC--HHHHHHHHHHHHHHHccC
Confidence            4688999999987654  88899999999999889999999999 999999999998 44  567799999999999852


Q ss_pred             -chHHHhhHhhhccCCChHHHHHHHhcC-ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhc-----------
Q 015939          165 -GVKEKLNRLILNTYNCLPLFLEILREG-NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLK-----------  231 (398)
Q Consensus       165 -~~~~~~~~~il~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~-----------  231 (398)
                       ++   ||.. +.+.|+|+.|+.+|+++ +.++++.|+.+|++|+.++++|..|+.  +++++|+++|.           
T Consensus       122 ~~~---nk~~-I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~--~alp~Lv~LL~~p~sg~~~~~~  195 (584)
T 3l6x_A          122 DQD---NKIA-IKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD--HALHALTDEVIIPHSGWEREPN  195 (584)
T ss_dssp             CHH---HHHH-HHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH--HTHHHHHHHTHHHHHCCC----
T ss_pred             CHH---HHHH-HHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh--ccHHHHHHHHhccccccccccc
Confidence             33   5777 77899999999999984 789999999999999999999999985  56999999872           


Q ss_pred             ------cccCHHHHHHHHHHHHHhcCCcc-hHHHHHHc-CChHHHHHHhcc----cCcchhhHHHHHHHHHHHhCCHHH-
Q 015939          232 ------LAEDQALNDAILSILITLSVYRS-VKAQLVEL-GMVQILTRILSD----SRTQILTVEKSIKMLSIVATCSEG-  298 (398)
Q Consensus       232 ------~~~~~~~~~~a~~aL~~Ls~~~~-~~~~~v~~-g~v~~Lv~lL~~----~~~~~~~~~~al~~L~~La~~~~~-  298 (398)
                            +..++++++.|+++|.||+...+ ++..|++. |+++.|+.+|++    ...+...++.|+++|+||+..-+. 
T Consensus       196 ~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e  275 (584)
T 3l6x_A          196 EDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHRE  275 (584)
T ss_dssp             ------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHH
T ss_pred             ccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhcccccc
Confidence                  11257899999999999998775 58888875 556899999963    124678999999999999975321 


Q ss_pred             -------------------------HHHHhhccCcHHHHHHHHhc-cChhHHHHHHHHHHHhhccCCC--hhHHHHHHhc
Q 015939          299 -------------------------RLALSEEASCAGRVVERVMK-VGKTAREDAVVVIWSMCCVYKD--ARVKEAVVNS  350 (398)
Q Consensus       299 -------------------------~~~i~~~~g~v~~Lv~~l~~-~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~~~  350 (398)
                                               .+.+. +.++|+.|+.+|.. .++.++++|+++|++||.....  ...+..+.+.
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~-~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~  354 (584)
T 3l6x_A          276 IPQAERYQEAAPNVANNTGTSPARGYELLF-QPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQE  354 (584)
T ss_dssp             STTCCC--------------CCCCGGGGGG-SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSH
T ss_pred             ccchhhhhhhcccccccccccCchhHHHHh-cccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHc
Confidence                                     11112 33557788999975 6899999999999999875310  1234455568


Q ss_pred             CCHHHHHHHHhhcCcHHHHHHHHHHHHHHhcC
Q 015939          351 NGLTKLLLVMQSENEGIVRKMCGDLVKVLGKA  382 (398)
Q Consensus       351 g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~~  382 (398)
                      |+++.|+.+|.++ ++.+++.|+.+|+.|+..
T Consensus       355 ~glp~Lv~LL~s~-~~~v~~~A~~aL~nLs~~  385 (584)
T 3l6x_A          355 KALSAIADLLTNE-HERVVKAASGALRNLAVD  385 (584)
T ss_dssp             HHHHHHHHGGGCS-CHHHHHHHHHHHHHHHTT
T ss_pred             CcHHHHHHHHcCC-CHHHHHHHHHHHHHHhCC
Confidence            9999999999877 789999999999999983

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.96  E-value=9.2e-27  Score=240.87  Aligned_cols=281  Identities=12%  Similarity=0.108  Sum_probs=238.4

Q ss_pred             HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhh-----------------------------hhh---hhhhhcCCcH
Q 015939           85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCE-----------------------------ANR---RFLASYGGFV  132 (398)
Q Consensus        85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~-----------------------------~~r---~~i~~~~g~v  132 (398)
                      +.++.|++.+++.+..  .+..|++.|.+++.+.+                             .++   +.+++. |++
T Consensus       421 g~Ip~LV~LL~s~d~~--i~~~al~~L~NLt~~~d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~Vvea-GaV  497 (810)
T 3now_A          421 ASIHALMDLARGGNQS--CLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANE-GIT  497 (810)
T ss_dssp             HHHHHHHHHHHTTCGG--GHHHHHHHHHHHTTCSCCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHT-THH
T ss_pred             chHHHHHHHhCCCChH--HHHHHHHHHHHHcCCchhhhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHC-cCH
Confidence            4578899999887654  88899999999997542                             122   678888 999


Q ss_pred             HHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchh
Q 015939          133 EAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNES  212 (398)
Q Consensus       133 ~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~  212 (398)
                      |.|+.+|++ .+  ..++++|+++|.|++.+.+    +|.. +.+.|++|.|+.+|.+++...++.|+++|.+|+.+.+.
T Consensus       498 p~LV~LL~s-~s--~~vqe~Aa~aL~NLA~d~~----~r~~-Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p  569 (810)
T 3now_A          498 TALCALAKT-ES--HNSQELIARVLNAVCGLKE----LRGK-VVQEGGVKALLRMALEGTEKGKRHATQALARIGITINP  569 (810)
T ss_dssp             HHHHHHHTC-CC--HHHHHHHHHHHHHHHTSHH----HHHH-HHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCH
T ss_pred             HHHHHHHcC-CC--HHHHHHHHHHHHHHcCCHH----HHHH-HHHCCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCCh
Confidence            999999998 44  4567999999999996533    4676 77999999999999999999999999999999876444


Q ss_pred             HHHhhc--hhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHH
Q 015939          213 KRRVLE--TENLLSALFDYLKLAEDQALNDAILSILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKML  289 (398)
Q Consensus       213 ~~~i~~--~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L  289 (398)
                      ...+..  ..|++++|+.+|.++.+...+..|+++|.||+..+ +++..++++|+++.|+.+|.  +.++.+++.|+++|
T Consensus       570 ~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~--s~~~~Vq~~A~~~L  647 (810)
T 3now_A          570 EVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLM--EDHLYLTRAAAQCL  647 (810)
T ss_dssp             HHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH--SCCTTHHHHHHHHH
T ss_pred             hhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHc--CCCHHHHHHHHHHH
Confidence            433321  25799999999986634445678999999999874 68889999999999999995  47889999999999


Q ss_pred             HHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHh-cCCHHHHHHHHhhcCcHHH
Q 015939          290 SIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVN-SNGLTKLLLVMQSENEGIV  368 (398)
Q Consensus       290 ~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~-~g~~~~Ll~~l~~~~~~~~  368 (398)
                      .||+.+++.+..+.+..|+++.|+.++...+..+++.|+++|++|+.++  +.....+++ .|+++.|+.+++++ +..+
T Consensus       648 ~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s--~~~~~~ii~~~g~I~~Lv~LL~s~-d~~v  724 (810)
T 3now_A          648 CNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVS--VKCCEKILAIASWLDILHTLIANP-SPAV  724 (810)
T ss_dssp             HHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHC--HHHHHHHHTSTTHHHHHHHHHTCS-SHHH
T ss_pred             HHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC--HHHHHHHHHHcCCHHHHHHHHCCC-CHHH
Confidence            9999999999988854799999999999999999999999999999853  577788888 99999999999977 8999


Q ss_pred             HHHHHHHHHHHhc
Q 015939          369 RKMCGDLVKVLGK  381 (398)
Q Consensus       369 k~~A~~lL~~l~~  381 (398)
                      |+.|.++|.++..
T Consensus       725 q~~A~~aL~NL~~  737 (810)
T 3now_A          725 QHRGIVIILNMIN  737 (810)
T ss_dssp             HHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHh
Confidence            9999999998876

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.95  E-value=1.3e-26  Score=232.62  Aligned_cols=282  Identities=13%  Similarity=0.138  Sum_probs=240.4

Q ss_pred             HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939           84 EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE  163 (398)
Q Consensus        84 ~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~  163 (398)
                      .+.++.|++.|++++. .+.+.+|+++|.+++.++++++..+++. |+||.|+.+|++ .+  ..+++.|+++|.+++.+
T Consensus        99 ~G~ip~LV~lL~~~~~-~~lq~~Aa~aL~nias~~~e~~~~vv~~-GaIp~Lv~lL~s-~~--~~v~e~A~~aL~nLa~d  173 (510)
T 3ul1_B           99 AGLIPKFVSFLGKTDC-SPIQFESAWALTNIASGTSEQTKAVVDG-GAIPAFISLLAS-PH--AHISEQAVWALGNIAGD  173 (510)
T ss_dssp             TTHHHHHHHHTTCTTC-HHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTC-SC--HHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHCCCCC-HHHHHHHHHHHHHHhcCCHHHHHHHHHC-CCHHHHHHHHcC-CC--HHHHHHHHHHHHHHHhC
Confidence            3468899999986653 2478899999999999999999999999 999999999988 44  56779999999999987


Q ss_pred             cchHHHhhHhhhccCCChHHHHHHHhcCCh-----hhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHH
Q 015939          164 NGVKEKLNRLILNTYNCLPLFLEILREGNL-----DSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQAL  238 (398)
Q Consensus       164 ~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~-----~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~  238 (398)
                      .+.   +|.. +.+.|+++.|+.+|...+.     ..+..++++|.+++.+......+....|+++.|+++|.+. ++++
T Consensus       174 ~~~---~r~~-v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~-~~~v  248 (510)
T 3ul1_B          174 GSA---FRDL-VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEV  248 (510)
T ss_dssp             CHH---HHHH-HHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCS-CHHH
T ss_pred             CHH---HHHH-HHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcC-CHHH
Confidence            655   3555 7799999999999986643     4577899999999998655544444478999999999998 8999


Q ss_pred             HHHHHHHHHHhcCCcchHHH-HHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHH
Q 015939          239 NDAILSILITLSVYRSVKAQ-LVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERV  316 (398)
Q Consensus       239 ~~~a~~aL~~Ls~~~~~~~~-~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l  316 (398)
                      +..++++|.+|+...+++.. +++.|+++.|+++|.  +.+..++..++.+|.+++. ++..+..+. +.|+++.|+.++
T Consensus       249 ~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~al~aL~nl~~~~~~~~~~i~-~~g~l~~L~~LL  325 (510)
T 3ul1_B          249 LADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG--ATELPIVTPALRAIGNIVTGTDEQTQKVI-DAGALAVFPSLL  325 (510)
T ss_dssp             HHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTGGGGCC-CT
T ss_pred             HHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhc--CCChhhhhHHHHHHHHhhcCCHHHHHHHh-hccchHHHHHHh
Confidence            99999999999987765544 569999999999995  4788999999999999977 556666777 579999999999


Q ss_pred             hccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          317 MKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       317 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      ...++.+++.|+++|.+|+..+  ++.+..+.+.|+++.|+.+++++ +..+|+.|+++|.++..
T Consensus       326 ~~~~~~v~~~A~~aL~nl~a~~--~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~Aa~aL~Nl~~  387 (510)
T 3ul1_B          326 TNPKTNIQKEATWTMSNITAGR--QDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTS  387 (510)
T ss_dssp             TCSSHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHcCc--HHHHHHHHhcCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence            9999999999999999999854  68889999999999999999877 89999999999998875

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=99.95  E-value=6.9e-27  Score=234.38  Aligned_cols=296  Identities=13%  Similarity=0.143  Sum_probs=236.3

Q ss_pred             HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhh-hhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939           85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATG-CEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE  163 (398)
Q Consensus        85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~-~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~  163 (398)
                      +.|+.|++.|.+++.+  .+..|+++|.+++.. ++.+|..|++. |+|+.|+.+|.+ .. +..++++|+.+|.+|+.+
T Consensus        90 G~Ip~LV~LL~s~~~~--vq~~Aa~AL~nLa~~~~~~nk~~I~~~-GaIp~LV~LL~s-~~-~~~~~e~aa~aL~nLS~~  164 (584)
T 3l6x_A           90 KGIPVLVGLLDHPKKE--VHLGACGALKNISFGRDQDNKIAIKNC-DGVPALVRLLRK-AR-DMDLTEVITGTLWNLSSH  164 (584)
T ss_dssp             THHHHHHHGGGCSSHH--HHHHHHHHHHHHTSSSCHHHHHHHHHT-THHHHHHHHHHH-CC-SHHHHHHHHHHHHHHTTS
T ss_pred             CCcHHHHHHHCCCCHH--HHHHHHHHHHHHHccCCHHHHHHHHHc-CCHHHHHHHHcC-CC-CHHHHHHHHHHHHHHhCC
Confidence            4688999999988765  899999999999985 68999999999 999999999997 32 345679999999999985


Q ss_pred             cchHHHhhHhhhccCCChHHHHHHHh------------------cCChhhHHHHHHHHHHhhcCc-hhHHHhhchhhHHH
Q 015939          164 NGVKEKLNRLILNTYNCLPLFLEILR------------------EGNLDSKIGSIKILDSISLDN-ESKRRVLETENLLS  224 (398)
Q Consensus       164 ~~~~~~~~~~il~~~g~i~~Lv~lL~------------------~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~~g~i~  224 (398)
                      ++    +|..|+ . ++++.|+++|.                  ..+.+++++|+++|++|+.+. +++..+++..|+++
T Consensus       165 ~~----~k~~I~-~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~  238 (584)
T 3l6x_A          165 DS----IKMEIV-D-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECDGLVD  238 (584)
T ss_dssp             GG----GHHHHH-H-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHH
T ss_pred             ch----hhHHHH-h-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHH
Confidence            54    477744 4 56999999872                  225689999999999999885 55887776567777


Q ss_pred             HHHHHhcc------------------------------------------------------------------------
Q 015939          225 ALFDYLKL------------------------------------------------------------------------  232 (398)
Q Consensus       225 ~Lv~lL~~------------------------------------------------------------------------  232 (398)
                      .|+.+|++                                                                        
T Consensus       239 ~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll~LL~  318 (584)
T 3l6x_A          239 ALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLK  318 (584)
T ss_dssp             HHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHHHHHc
Confidence            77777653                                                                        


Q ss_pred             -ccCHHHHHHHHHHHHHhcCCc-----chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhcc
Q 015939          233 -AEDQALNDAILSILITLSVYR-----SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEA  306 (398)
Q Consensus       233 -~~~~~~~~~a~~aL~~Ls~~~-----~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~  306 (398)
                       ..++.++++|+++|.||+.+.     .++..+.+.|+++.|+++|.  +++..+++.|+++|+||+.++.++..|.  .
T Consensus       319 ~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~--s~~~~v~~~A~~aL~nLs~~~~~~~~I~--~  394 (584)
T 3l6x_A          319 ESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLT--NEHERVVKAASGALRNLAVDARNKELIG--K  394 (584)
T ss_dssp             HCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGG--CSCHHHHHHHHHHHHHHHTTCSCHHHHH--H
T ss_pred             cCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHc--CCCHHHHHHHHHHHHHHhCChhHHHHHH--h
Confidence             113455667777788886543     22333346899999999995  4788999999999999999888887774  4


Q ss_pred             CcHHHHHHHHhcc--------ChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhc-CcHHHHHHHHHHHH
Q 015939          307 SCAGRVVERVMKV--------GKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSE-NEGIVRKMCGDLVK  377 (398)
Q Consensus       307 g~v~~Lv~~l~~~--------~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~-~~~~~k~~A~~lL~  377 (398)
                      |+++.||.+|..+        +..+...|+++|.||+..  +++.+..+++.|+++.|+.+++++ .++.+++.|+.+|.
T Consensus       395 g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~--~~~~~~~I~~~g~I~~Lv~LL~s~~~~~~v~k~Aa~vL~  472 (584)
T 3l6x_A          395 HAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAE--NLEAAKKLRETQGIEKLVLINKSGNRSEKEVRAAALVLQ  472 (584)
T ss_dssp             HHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTT--CHHHHHHHHHTTHHHHHHHHHTCSSSCHHHHHHHHHHHH
T ss_pred             CCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcC--CHHHHHHHHHCCChHHHHHHHhCCCCChHHHHHHHHHHH
Confidence            8999999999875        457788999999999864  478999999999999999999874 47899999999999


Q ss_pred             HHhcCC----CCCCCCCCcccccc
Q 015939          378 VLGKAS----GLGNYQTKTAHIMP  397 (398)
Q Consensus       378 ~l~~~~----~~~~~~~~~~~~~~  397 (398)
                      .|..+.    -.....+++.||++
T Consensus       473 nl~~~~elr~~~kk~G~~~~~f~~  496 (584)
T 3l6x_A          473 TIWGYKELRKPLEKEGWKKSDFQV  496 (584)
T ss_dssp             HHHTSHHHHHHHHTTTCCGGGGCC
T ss_pred             HHHcCHHHHHHHHHcCCCHHHhcc
Confidence            998752    24446667777653

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=99.95  E-value=6.1e-27  Score=235.07  Aligned_cols=281  Identities=12%  Similarity=0.120  Sum_probs=237.4

Q ss_pred             HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhh-hhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939           86 EVRVWIEKIKSENESENSCVDYLVKVAKFATG-CEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN  164 (398)
Q Consensus        86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~-~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~  164 (398)
                      .++.+++.+.|.+.+  .+..|+..++++.+. .....+.+++. |+||.|+.+|++ .+ +..++..|+++|.|++.++
T Consensus        58 ~i~~~v~~l~s~d~~--~q~~a~~~~rklls~e~~ppi~~ii~~-G~ip~LV~lL~~-~~-~~~lq~~Aa~aL~nias~~  132 (510)
T 3ul1_B           58 SVEDIVKGINSNNLE--SQLQATQAARKLLSREKQPPIDNIIRA-GLIPKFVSFLGK-TD-CSPIQFESAWALTNIASGT  132 (510)
T ss_dssp             CHHHHHHHHTSSCHH--HHHHHHHHHHHHHTCSSCCCHHHHHHT-THHHHHHHHTTC-TT-CHHHHHHHHHHHHHHHTSC
T ss_pred             hHHHHHHHhcCCCHH--HHHHHHHHHHHHhcCCCCchHHHHHHC-CCHHHHHHHHCC-CC-CHHHHHHHHHHHHHHhcCC
Confidence            478899999998865  899999999986643 33346788899 999999999986 32 3457799999999999866


Q ss_pred             chHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhcccc----CHHHH
Q 015939          165 GVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAE----DQALN  239 (398)
Q Consensus       165 ~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~----~~~~~  239 (398)
                      ++   +++. +++.|++|.|+.+|++++.++++.|+++|.+|+.+ ++.+..+.. .|++++|+.+|....    ....+
T Consensus       133 ~e---~~~~-vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~-~G~i~~Ll~lL~~~~~~~~~~~~~  207 (510)
T 3ul1_B          133 SE---QTKA-VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIK-HGAIDPLLALLAVPDLSTLACGYL  207 (510)
T ss_dssp             HH---HHHH-HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHHTCSSCGGGSCHHHH
T ss_pred             HH---HHHH-HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH-cCChHHHHHHHHhccchhhhHHHH
Confidence            65   3455 78999999999999999999999999999999987 677888887 899999999998651    23568


Q ss_pred             HHHHHHHHHhcCCcchHHHHH-HcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhc
Q 015939          240 DAILSILITLSVYRSVKAQLV-ELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMK  318 (398)
Q Consensus       240 ~~a~~aL~~Ls~~~~~~~~~v-~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~  318 (398)
                      +.++++|.+++.+......+. ..|+++.|+.+|.  +.+++++..|+++|.+|+..+..+..++...|+++.|+.++..
T Consensus       208 ~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~--~~~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~  285 (510)
T 3ul1_B          208 RNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH--HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGA  285 (510)
T ss_dssp             HHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTC
T ss_pred             HHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHh--cCCHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcC
Confidence            899999999998776544443 5789999999995  4789999999999999998666555444468999999999999


Q ss_pred             cChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          319 VGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       319 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      .+..++..|+++|++++..+  +..+..+++.|+++.|+.+|++. ++.+|+.|+++|.++..
T Consensus       286 ~~~~v~~~al~aL~nl~~~~--~~~~~~i~~~g~l~~L~~LL~~~-~~~v~~~A~~aL~nl~a  345 (510)
T 3ul1_B          286 TELPIVTPALRAIGNIVTGT--DEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITA  345 (510)
T ss_dssp             SCHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTGGGGCC-CTTCS-SHHHHHHHHHHHHHHTT
T ss_pred             CChhhhhHHHHHHHHhhcCC--HHHHHHHhhccchHHHHHHhcCC-CHHHHHHHHHHHHHHHc
Confidence            99999999999999999753  67888999999999999999876 78999999999999976

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=99.95  E-value=9.2e-27  Score=240.87  Aligned_cols=287  Identities=13%  Similarity=0.070  Sum_probs=244.5

Q ss_pred             HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939           85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN  164 (398)
Q Consensus        85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~  164 (398)
                      +.++.|+..+++++.+  .+.+|++.|.+++.+ +.+|..+++. |++++|+.+|.+ .+  ...++.|+++|.+++.+.
T Consensus       495 GaVp~LV~LL~s~s~~--vqe~Aa~aL~NLA~d-~~~r~~Vv~~-Gaip~Lv~LL~s-~~--~~~k~~Aa~AL~nL~~~~  567 (810)
T 3now_A          495 GITTALCALAKTESHN--SQELIARVLNAVCGL-KELRGKVVQE-GGVKALLRMALE-GT--EKGKRHATQALARIGITI  567 (810)
T ss_dssp             THHHHHHHHHTCCCHH--HHHHHHHHHHHHHTS-HHHHHHHHHT-THHHHHHHHHHS-SC--HHHHHHHHHHHHHHHHHS
T ss_pred             cCHHHHHHHHcCCCHH--HHHHHHHHHHHHcCC-HHHHHHHHHC-CCHHHHHHHHcc-CC--HHHHHHHHHHHHHHhcCC
Confidence            3577888888887754  899999999999964 6799999999 999999999988 43  356799999999999764


Q ss_pred             chHHHhhHhhhc---cCCChHHHHHHHhcC-ChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHH
Q 015939          165 GVKEKLNRLILN---TYNCLPLFLEILREG-NLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALN  239 (398)
Q Consensus       165 ~~~~~~~~~il~---~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~  239 (398)
                      +..    .. +.   ..|++|.|+++|+++ +...+..|+++|.+|+.. ++++..+.+ .|+++.|+.+|.+. ++.++
T Consensus       568 ~p~----~~-~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~-aG~l~~Lv~LL~s~-~~~Vq  640 (810)
T 3now_A          568 NPE----VS-FSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIK-EQGVSKIEYYLMED-HLYLT  640 (810)
T ss_dssp             CHH----HH-TTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHHHSC-CTTHH
T ss_pred             Chh----hh-hcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHH-cCCHHHHHHHHcCC-CHHHH
Confidence            431    11 11   136999999999876 445567899999999988 678888888 89999999999998 88899


Q ss_pred             HHHHHHHHHhcCCcchHHHHHH-cCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHh
Q 015939          240 DAILSILITLSVYRSVKAQLVE-LGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVM  317 (398)
Q Consensus       240 ~~a~~aL~~Ls~~~~~~~~~v~-~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~  317 (398)
                      ++|+++|.||+.+++.+..+++ .|+++.|+.++.  +.+..+++.|+++|.+|+. ++...+.+..++|+++.|+.++.
T Consensus       641 ~~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~--s~d~~vq~~Aa~ALanLt~~s~~~~~~ii~~~g~I~~Lv~LL~  718 (810)
T 3now_A          641 RAAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCE--DEDEETATACAGALAIITSVSVKCCEKILAIASWLDILHTLIA  718 (810)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGG--CSSHHHHHHHHHHHHHHHHHCHHHHHHHHTSTTHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhc--CCCHHHHHHHHHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHC
Confidence            9999999999999999888885 799999999995  4788999999999999998 78888999854799999999999


Q ss_pred             ccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhc--CcHHHHHHHHHHHHHHhcCCCCCCCC
Q 015939          318 KVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSE--NEGIVRKMCGDLVKVLGKASGLGNYQ  389 (398)
Q Consensus       318 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~--~~~~~k~~A~~lL~~l~~~~~~~~~~  389 (398)
                      .++.++++.|+.+|.|++..+  .+....+++.|+++.|..+++..  .+.++.+.|...|+.+-+|+-+...+
T Consensus       719 s~d~~vq~~A~~aL~NL~~~s--~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g~~~~~~  790 (810)
T 3now_A          719 NPSPAVQHRGIVIILNMINAG--EEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYRIIERSD  790 (810)
T ss_dssp             CSSHHHHHHHHHHHHHHHTTC--HHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHHTC----
T ss_pred             CCCHHHHHHHHHHHHHHHhCC--HHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCCCccCCC
Confidence            999999999999999999853  67899999999999999999654  47899999999999999976665555

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=99.95  E-value=7.4e-27  Score=222.52  Aligned_cols=246  Identities=15%  Similarity=0.105  Sum_probs=206.3

Q ss_pred             HHHHHHHHHHHcC---------CCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHH
Q 015939           85 QEVRVWIEKIKSE---------NESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVR  155 (398)
Q Consensus        85 ~~i~~l~~~l~~~---------~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~  155 (398)
                      +.++.|+..|.+.         ..+.+.+..|++.|.+++.+++.+|..+...+|+||.|+.+|++ .+  ..+++.|++
T Consensus        73 G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s-~~--~~v~~~A~~  149 (354)
T 3nmw_A           73 GGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS-ES--EDLQQVIAS  149 (354)
T ss_dssp             THHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHCHHHHHHHHHGGGC-SC--HHHHHHHHH
T ss_pred             CCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCcHHHHHHHHCC-CC--HHHHHHHHH
Confidence            4567777777532         11124678999999999988888898886553779999999997 44  457799999


Q ss_pred             HHHhhhcccchHHHhhHhhhccCCChHHHHHHH-hcCChhhHHHHHHHHHHhhc-CchhHHHhhchhhHHHHHHHHhccc
Q 015939          156 VLNLIVNENGVKEKLNRLILNTYNCLPLFLEIL-REGNLDSKIGSIKILDSISL-DNESKRRVLETENLLSALFDYLKLA  233 (398)
Q Consensus       156 ~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~lL~~~  233 (398)
                      +|.+|+..+++  .+|.. +.+.|+|+.|+++| ++++.++++.|+.+|++|+. .++++..++...|+++.|+++|+++
T Consensus       150 aL~nLs~~~~~--~~k~~-i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~~nk~~i~~~~Gai~~Lv~lL~~~  226 (354)
T 3nmw_A          150 VLRNLSWRADV--NSKKT-LREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYR  226 (354)
T ss_dssp             HHHHHHTTCCH--HHHHH-HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHSTTHHHHHHHHTTCC
T ss_pred             HHHHHhccCCH--HHHHH-HHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccChhhhHHHHHhcCcHHHHHHHhccC
Confidence            99999975322  25666 67899999999975 56789999999999999999 5788888884489999999999977


Q ss_pred             cCH---HHHHHHHHHHHHhcC----CcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhc
Q 015939          234 EDQ---ALNDAILSILITLSV----YRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEE  305 (398)
Q Consensus       234 ~~~---~~~~~a~~aL~~Ls~----~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~  305 (398)
                      .+.   ++++.|+++|+||+.    +++++..+++.|+++.|+++|+  +.+..+++.|+++|.||+. ++++++.+. +
T Consensus       227 ~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~~~g~i~~Lv~lL~--~~~~~v~~~A~~aL~nLa~~~~~~~~~i~-~  303 (354)
T 3nmw_A          227 SQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNCLQTLLQHLK--SHSLTIVSNACGTLWNLSARNPKDQEALW-D  303 (354)
T ss_dssp             CSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTSSCHHHHHHHH-H
T ss_pred             CCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHcCCHHHHHHHHc--CCChHHHHHHHHHHHHHhCCCHHHHHHHH-H
Confidence            332   589999999999985    7789999999999999999995  4788999999999999994 789999998 5


Q ss_pred             cCcHHHHHHHHhccChhHHHHHHHHHHHhhccCC
Q 015939          306 ASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYK  339 (398)
Q Consensus       306 ~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~  339 (398)
                      .|+|+.|++++.++++.+++.|+.+|.+|+.+.+
T Consensus       304 ~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~  337 (354)
T 3nmw_A          304 MGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRP  337 (354)
T ss_dssp             TTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCC
T ss_pred             CCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCH
Confidence            7999999999999999999999999999998754

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=99.95  E-value=1.2e-26  Score=229.82  Aligned_cols=281  Identities=11%  Similarity=0.114  Sum_probs=230.4

Q ss_pred             HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939           85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN  164 (398)
Q Consensus        85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~  164 (398)
                      +.++.|++.|++++.+  .+..|+++|++++.+++.+|..+++. |++|.|+.+|..+.  +.++++.|+++|.+|+.++
T Consensus        44 g~i~~Lv~lL~s~~~~--~~~~A~~aL~nLa~~~~~~k~~i~~~-G~i~~Lv~lL~~~~--~~~~~~~a~~aL~nLa~~~  118 (457)
T 1xm9_A           44 GGICKLVDLLRSPNQN--VQQAAAGALRNLVFRSTTNKLETRRQ-NGIREAVSLLRRTG--NAEIQKQLTGLLWNLSSTD  118 (457)
T ss_dssp             THHHHHHHHTTSSCHH--HHHHHHHHHHHHHSSCHHHHHHHHHT-TCHHHHHHHHTTCC--CHHHHHHHHHHHHHHHTSS
T ss_pred             CCHHHHHHHHcCCCHH--HHHHHHHHHHHHhcCCHHHHHHHHHc-CCHHHHHHHHhhCC--CHHHHHHHHHHHHHHhcCH
Confidence            4688999999977654  88999999999999889999999999 99999999998413  4567799999999999874


Q ss_pred             chHHHhhHhhhccCCChHHHHHHHh--------cC--------ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHH
Q 015939          165 GVKEKLNRLILNTYNCLPLFLEILR--------EG--------NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFD  228 (398)
Q Consensus       165 ~~~~~~~~~il~~~g~i~~Lv~lL~--------~~--------~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~  228 (398)
                      +    +|.. +.+ |++|.|+++|.        ++        +.+++..|+++|++|+.+++++..+.+..|++++|+.
T Consensus       119 ~----~~~~-i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~  192 (457)
T 1xm9_A          119 E----LKEE-LIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMA  192 (457)
T ss_dssp             S----THHH-HHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHH
T ss_pred             H----hHHH-HHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHHHHHH
Confidence            4    3676 456 99999999993        22        3455669999999999998899998872399999998


Q ss_pred             Hhccc---------------------------------------------------------------------------
Q 015939          229 YLKLA---------------------------------------------------------------------------  233 (398)
Q Consensus       229 lL~~~---------------------------------------------------------------------------  233 (398)
                      +|+++                                                                           
T Consensus       193 lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (457)
T 1xm9_A          193 YVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETN  272 (457)
T ss_dssp             HHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCCCCSS
T ss_pred             HHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccccccC
Confidence            88641                                                                           


Q ss_pred             -----------------------cCHHHHHHHHHHHHHhcCCcch-----HHHHH-HcCChHHHHHHhcccCcchhhHHH
Q 015939          234 -----------------------EDQALNDAILSILITLSVYRSV-----KAQLV-ELGMVQILTRILSDSRTQILTVEK  284 (398)
Q Consensus       234 -----------------------~~~~~~~~a~~aL~~Ls~~~~~-----~~~~v-~~g~v~~Lv~lL~~~~~~~~~~~~  284 (398)
                                             .++..+++|+++|+||+.+...     .+.++ ++|++|.|+++|.  +++.+++..
T Consensus       273 ~~~~~~l~~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~--~~~~~v~~~  350 (457)
T 1xm9_A          273 PKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQ--SGNSDVVRS  350 (457)
T ss_dssp             CCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTT--CSCHHHHHH
T ss_pred             chHHHHHhCcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHh--CCCHhHHHH
Confidence                                   1245667789999999875432     13344 6999999999995  478999999


Q ss_pred             HHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccCh------hHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHH
Q 015939          285 SIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGK------TAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLL  358 (398)
Q Consensus       285 al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~------~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~  358 (398)
                      |+++|.+|+.+++++..+.  .|+++.|+.+|..+++      ++...++.+|.++...+  ++....+.+.|++++|+.
T Consensus       351 A~~aL~nls~~~~~~~~i~--~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~--~~~~~~i~~~g~l~~L~~  426 (457)
T 1xm9_A          351 GASLLSNMSRHPLLHRVMG--NQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQ--PQLAKQYFSSSMLNNIIN  426 (457)
T ss_dssp             HHHHHHHHHTSGGGHHHHH--HHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTC--THHHHHHCCHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHH--HhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcC--HHHHHHHHHcCCHHHHHH
Confidence            9999999999988887776  3799999999987543      57779999999998743  678888999999999999


Q ss_pred             HHhhcCcHHHHHHHHHHHHHHhcC
Q 015939          359 VMQSENEGIVRKMCGDLVKVLGKA  382 (398)
Q Consensus       359 ~l~~~~~~~~k~~A~~lL~~l~~~  382 (398)
                      ++.++-+++++++|..+|..+..+
T Consensus       427 L~~~~~~~~i~~~A~~~L~~~~~~  450 (457)
T 1xm9_A          427 LCRSSASPKAAEAARLLLSDMWSS  450 (457)
T ss_dssp             HHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred             HHcCCCcHHHHHHHHHHHHHHHcc
Confidence            998664789999999999988763

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.95  E-value=4.7e-26  Score=229.67  Aligned_cols=282  Identities=13%  Similarity=0.126  Sum_probs=241.0

Q ss_pred             HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939           84 EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE  163 (398)
Q Consensus        84 ~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~  163 (398)
                      .+.++.|++.|..++. .+.+..|+++|.+++.+++.++..+++. |++|.|+.+|.+ .+  ..+++.|+++|.+++.+
T Consensus       118 ~G~ip~Lv~lL~~~~~-~~~q~~Aa~aL~nia~~~~~~~~~vv~~-Gaip~Lv~LL~s-~~--~~v~e~A~~aL~nLa~~  192 (529)
T 3tpo_A          118 AGLIPKFVSFLGKTDC-SPIQFESAWALTNIASGTSEQTKAVVDG-GAIPAFISLLAS-PH--AHISEQAVWALGNIAGA  192 (529)
T ss_dssp             TTHHHHHHHHHTCTTC-HHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTC-SC--HHHHHHHHHHHHHHHTT
T ss_pred             CCCHHHHHHHHcCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHHC-CCHHHHHHHHcC-CC--HHHHHHHHHHHHHHhcc
Confidence            3567889999976553 3478899999999999989999999999 999999999998 44  56779999999999987


Q ss_pred             cchHHHhhHhhhccCCChHHHHHHHhcCC-----hhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHH
Q 015939          164 NGVKEKLNRLILNTYNCLPLFLEILREGN-----LDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQAL  238 (398)
Q Consensus       164 ~~~~~~~~~~il~~~g~i~~Lv~lL~~~~-----~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~  238 (398)
                      ++.   +|.. +.+.|+++.|+.+|...+     ...+..++++|.+++.+......+....|+++.|+++|.++ ++++
T Consensus       193 ~~~---~r~~-i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~-~~~v  267 (529)
T 3tpo_A          193 GSA---FRDL-VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEV  267 (529)
T ss_dssp             CHH---HHHH-HHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSS-CHHH
T ss_pred             CHH---HHHH-HHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCC-cHHH
Confidence            655   4565 778999999999998654     34577899999999998655444444478999999999998 8999


Q ss_pred             HHHHHHHHHHhcCCcchHH-HHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHH
Q 015939          239 NDAILSILITLSVYRSVKA-QLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERV  316 (398)
Q Consensus       239 ~~~a~~aL~~Ls~~~~~~~-~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l  316 (398)
                      +..++++|.+|+.+.+++. .+++.|+++.|+++|.  +++..++..++.+|.+|+. +++.+..+. +.|+++.|+.++
T Consensus       268 ~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~--~~~~~v~~~a~~aL~nl~~~~~~~~~~i~-~~g~l~~L~~LL  344 (529)
T 3tpo_A          268 LADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG--ATELPIVTPALRAIGNIVTGTDEQTQKVI-DAGALAVFPSLL  344 (529)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTGGGGHHHHT
T ss_pred             HHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhc--CCChhHHHHHHHHHHHHHccchHHHHHHh-hcccHHHHHHHH
Confidence            9999999999998776554 4569999999999995  4789999999999999987 566677777 579999999999


Q ss_pred             hccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          317 MKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       317 ~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      ..+++.+++.|+++|.+|+.++  +..+..+++.|+++.|+.+|+++ +..+|+.|+++|.++..
T Consensus       345 ~~~~~~i~~~a~~aL~nl~~~~--~~~~~~v~~~g~i~~Lv~lL~~~-~~~v~~~A~~aL~nl~~  406 (529)
T 3tpo_A          345 TNPKTNIQKEATWTMSNITAGR--QDQIQQVVNHGLVPFLVGVLSKA-DFKTQKAAAWAITNYTS  406 (529)
T ss_dssp             TCSSHHHHHHHHHHHHHHHTSC--HHHHHHHHHTTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHhccc--HHHHHHHHhcCcHHHHHHHhcCC-CHHHHHHHHHHHHHHHc
Confidence            9999999999999999999854  67888999999999999999877 78999999999998865

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=99.95  E-value=6.2e-26  Score=228.78  Aligned_cols=282  Identities=10%  Similarity=0.112  Sum_probs=240.5

Q ss_pred             HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccC---CcHHHHHHHHHHHHhhh
Q 015939           85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRR---SEIAVLESAVRVLNLIV  161 (398)
Q Consensus        85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~---~~~~~~~~al~~L~~l~  161 (398)
                      +.++.|+..|.+++.+  .+..|+++|.+++.+++.+|..+.+. |+++.|+.+|.. .+   .....+..++++|.+++
T Consensus       162 Gaip~Lv~LL~s~~~~--v~e~A~~aL~nLa~~~~~~r~~i~~~-g~i~~Ll~lL~~-~~~~~~~~~~~~~a~~~L~nl~  237 (529)
T 3tpo_A          162 GAIPAFISLLASPHAH--ISEQAVWALGNIAGAGSAFRDLVIKH-GAIDPLLALLAV-PDLSTLACGYLRNLTWTLSNLC  237 (529)
T ss_dssp             THHHHHHHHTTCSCHH--HHHHHHHHHHHHHTTCHHHHHHHHHT-TCHHHHHHTTCS-SCGGGSCHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHcCCCHH--HHHHHHHHHHHHhccCHHHHHHHHHc-CCcHHHHHHHhc-cchhHhHHHHHHHHHHHHHHHH
Confidence            4578889888887765  88999999999999999999999999 999999999976 22   12456788999999999


Q ss_pred             cccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchh-HHHhhchhhHHHHHHHHhccccCHHHHH
Q 015939          162 NENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNES-KRRVLETENLLSALFDYLKLAEDQALND  240 (398)
Q Consensus       162 ~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~-~~~i~~~~g~i~~Lv~lL~~~~~~~~~~  240 (398)
                      .+....    ..+....+++|.|+.+|++++.+++..|+++|.+|+.+++. ...+.. .|+++.|+.+|.+. ++.++.
T Consensus       238 ~~~~~~----~~~~~~~~~lp~L~~LL~~~~~~v~~~a~~aL~~l~~~~~~~~~~v~~-~g~i~~Lv~lL~~~-~~~v~~  311 (529)
T 3tpo_A          238 RNKNPA----PPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVK-KGVVPQLVKLLGAT-ELPIVT  311 (529)
T ss_dssp             CCCTTC----CCHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHHHT-TTCHHHHHHHHTCS-CHHHHH
T ss_pred             hcccch----hhHHHHhhHHHHHHHHhcCCcHHHHHHHHHHHHHhhhhhhhhHHHHHh-ccchHHHHHHhcCC-ChhHHH
Confidence            876542    22233468899999999999999999999999999998554 444555 89999999999998 899999


Q ss_pred             HHHHHHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhc
Q 015939          241 AILSILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMK  318 (398)
Q Consensus       241 ~a~~aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~  318 (398)
                      .++++|.+++... ..+..+++.|+++.|+.+|.  ++++.+++.|+++|.||+. ++..+..+. +.|+++.|+.++.+
T Consensus       312 ~a~~aL~nl~~~~~~~~~~i~~~g~l~~L~~LL~--~~~~~i~~~a~~aL~nl~~~~~~~~~~v~-~~g~i~~Lv~lL~~  388 (529)
T 3tpo_A          312 PALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLT--NPKTNIQKEATWTMSNITAGRQDQIQQVV-NHGLVPFLVGVLSK  388 (529)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHTTGGGGHHHHTT--CSSHHHHHHHHHHHHHHHTSCHHHHHHHH-HTTHHHHHHHHHHS
T ss_pred             HHHHHHHHHHccchHHHHHHhhcccHHHHHHHHc--CCCHHHHHHHHHHHHHHhcccHHHHHHHH-hcCcHHHHHHHhcC
Confidence            9999999998755 56777889999999999995  4788999999999999988 555666666 67999999999999


Q ss_pred             cChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          319 VGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       319 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      ++..+++.|+.+|.+++... +.+....+++.|+++.|+.+|.+. +++++..+...|..+-.
T Consensus       389 ~~~~v~~~A~~aL~nl~~~~-~~~~~~~l~~~g~i~~L~~LL~~~-d~~i~~~~L~aL~nil~  449 (529)
T 3tpo_A          389 ADFKTQKAAAWAITNYTSGG-TVEQIVYLVHCGIIEPLMNLLSAK-DTKIIQVILDAISNIFQ  449 (529)
T ss_dssp             SCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHTTCHHHHHHGGGCS-CHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCC-CHHHHHHHHHCcCHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            99999999999999999763 467888899999999999999877 78899999888877654

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.94  E-value=4.3e-25  Score=200.06  Aligned_cols=237  Identities=15%  Similarity=0.209  Sum_probs=212.9

Q ss_pred             CcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC
Q 015939          130 GFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD  209 (398)
Q Consensus       130 g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~  209 (398)
                      |.++.|+.+|.+ .+  ..++..|+.+|.+++...+.   ++.. +.+.|+++.|+.+|++++.+++..|+++|.+|+.+
T Consensus         2 ~~i~~L~~~L~~-~~--~~~~~~a~~~L~~l~~~~~~---~~~~-~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~   74 (252)
T 4hxt_A            2 NDVEKLVKLLTS-TD--SETQKEAARDLAEIASGPAS---AIKA-IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASG   74 (252)
T ss_dssp             CHHHHHHHHTTC-SC--HHHHHHHHHHHHHHHTSCHH---HHHH-HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred             CcHHHHHHHHcC-CC--HHHHHHHHHHHHHHhcCCcH---HHHH-HHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcC
Confidence            789999999998 44  56779999999999987653   3555 77899999999999999999999999999999998


Q ss_pred             -chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhc-CCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHH
Q 015939          210 -NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLS-VYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIK  287 (398)
Q Consensus       210 -~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls-~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~  287 (398)
                       ++++..+.. .|+++.|+.+|+++ +++++..|+++|.+|+ .+++++..+++.|+++.|+++|.  ++++.++..+++
T Consensus        75 ~~~~~~~~~~-~~~i~~l~~ll~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~--~~~~~~~~~a~~  150 (252)
T 4hxt_A           75 PDEAIKAIVD-AGGVEVLVKLLTST-DSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLT--STDSEVQKEAAR  150 (252)
T ss_dssp             CHHHHHHHHH-TTHHHHHHHHTTCS-SHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHH
T ss_pred             ChHHHHHHHH-CCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHH
Confidence             888888887 89999999999988 8999999999999999 56678888999999999999995  478999999999


Q ss_pred             HHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcH
Q 015939          288 MLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEG  366 (398)
Q Consensus       288 ~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~  366 (398)
                      +|.+|+. .+..+..+. +.|+++.|+.++.++++.++..|+.+|.+++..  ++..+..+.+.|+++.|+.+++.+ ++
T Consensus       151 ~L~~l~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~--~~~~~~~l~~~~~i~~L~~ll~~~-~~  226 (252)
T 4hxt_A          151 ALANIASGPDEAIKAIV-DAGGVEVLVKLLTSTDSEVQKEAARALANIASG--PTSAIKAIVDAGGVEVLQKLLTST-DS  226 (252)
T ss_dssp             HHHHHTTSCHHHHHHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS--BHHHHHHHHHTTHHHHHHHGGGCS-CH
T ss_pred             HHHHHHcCCHHHHHHHH-HCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcC--CHHHHHHHHHCCCHHHHHHHHCCC-cH
Confidence            9999998 555667777 579999999999999999999999999999974  367888999999999999999876 78


Q ss_pred             HHHHHHHHHHHHHhc
Q 015939          367 IVRKMCGDLVKVLGK  381 (398)
Q Consensus       367 ~~k~~A~~lL~~l~~  381 (398)
                      .+|+.|..+|..+..
T Consensus       227 ~v~~~a~~~L~~l~~  241 (252)
T 4hxt_A          227 EVQKEAQRALENIKS  241 (252)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHc
Confidence            999999999999998

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.94  E-value=3.3e-25  Score=201.50  Aligned_cols=237  Identities=15%  Similarity=0.195  Sum_probs=209.1

Q ss_pred             HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939           85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN  164 (398)
Q Consensus        85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~  164 (398)
                      ...+.+++.|++++.+  .+..|++.|+++...++.++..+.+. |+++.|+.+|++ .+  ..++..|+++|.+++.++
T Consensus        12 ~~~~~~~~~L~s~~~~--~~~~a~~~L~~~l~~~~~~~~~~~~~-g~i~~L~~lL~~-~~--~~v~~~a~~~L~~l~~~~   85 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQ--EQLSATRKFSQILSDGNEQIQAVIDA-GALPALVQLLSS-PN--EQILQEALWALSNIASGG   85 (252)
T ss_dssp             CSHHHHHHHHHSSCSS--HHHHHHHHHHHHHHHHHHHHHHHHHT-THHHHHHHGGGC-SC--HHHHHHHHHHHHHHTTSC
T ss_pred             chHHHHHHHHcCCCHH--HHHHHHHHHHHHHcCCCchHHHHHHc-CcHHHHHHHHcC-CC--HHHHHHHHHHHHHHhcCC
Confidence            3477889999998876  99999999988776678889999999 999999999998 44  567799999999999865


Q ss_pred             chHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhH-HHhhchhhHHHHHHHHhccccCHHHHHHHH
Q 015939          165 GVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESK-RRVLETENLLSALFDYLKLAEDQALNDAIL  243 (398)
Q Consensus       165 ~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~-~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~  243 (398)
                      +.   ++.. +.+.|+++.|+.+|++++.+++..|+++|.+|+.+++.+ ..+.. .|+++.|+++|+++ ++.++..|+
T Consensus        86 ~~---~~~~-i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~lL~~~-~~~v~~~a~  159 (252)
T 4db8_A           86 NE---QIQA-VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVID-AGALPALVQLLSSP-NEQILQEAL  159 (252)
T ss_dssp             HH---HHHH-HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHGGGCS-CHHHHHHHH
T ss_pred             HH---HHHH-HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHH-CCCHHHHHHHHhCC-CHHHHHHHH
Confidence            54   3555 778899999999999999999999999999999998888 77776 89999999999998 899999999


Q ss_pred             HHHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccCh
Q 015939          244 SILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGK  321 (398)
Q Consensus       244 ~aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~  321 (398)
                      ++|.+|+... +++..+++.|+++.|+++|.+  +++.+++.|+++|.+|+. +++.+..+. +.|+++.|+.++.++++
T Consensus       160 ~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~  236 (252)
T 4db8_A          160 WALSNIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALWALSNIASGGNEQKQAVK-EAGALEKLEQLQSHENE  236 (252)
T ss_dssp             HHHHHHTTSCHHHHHHHHHTTCHHHHHHGGGC--SSHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHTTTTCSSS
T ss_pred             HHHHHHHcCChHHHHHHHHCCCHHHHHHHHCC--CCHHHHHHHHHHHHHHhcCCHHHHHHHH-HCCcHHHHHHHhCCCCH
Confidence            9999999755 567777899999999999954  689999999999999995 677777887 57999999999999999


Q ss_pred             hHHHHHHHHHHHhhc
Q 015939          322 TAREDAVVVIWSMCC  336 (398)
Q Consensus       322 ~~~~~a~~~L~~l~~  336 (398)
                      .+++.|+.+|.+|+.
T Consensus       237 ~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          237 KIQKEAQEALEKLQS  251 (252)
T ss_dssp             HHHHTHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999999885

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.94  E-value=2.8e-24  Score=216.54  Aligned_cols=280  Identities=15%  Similarity=0.122  Sum_probs=240.9

Q ss_pred             HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939           85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN  164 (398)
Q Consensus        85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~  164 (398)
                      +.++.|++.|.+++. .+.+..|++.|.+++.+++.++..+.+. |+++.|+.+|.+ .  +..+++.|+++|.+++.+.
T Consensus       117 g~v~~Lv~lL~~~~~-~~v~~~A~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~lL~~-~--~~~v~~~a~~aL~~l~~~~  191 (528)
T 4b8j_A          117 GVVPRFVQFLTREDF-PQLQFEAAWALTNIASGTSENTKVVIDH-GAVPIFVKLLGS-S--SDDVREQAVWALGNVAGDS  191 (528)
T ss_dssp             TCHHHHHHHHTCTTC-HHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTC-S--CHHHHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHhCCCCC-HHHHHHHHHHHHHHhCCCHHHHHHHHhC-CcHHHHHHHhcC-C--CHHHHHHHHHHHHHHhCCC
Confidence            347788888887652 3478899999999999889999999999 999999999998 4  4567799999999999765


Q ss_pred             chHHHhhHhhhccCCChHHHHHHH-hcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHH
Q 015939          165 GVKEKLNRLILNTYNCLPLFLEIL-REGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAIL  243 (398)
Q Consensus       165 ~~~~~~~~~il~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~  243 (398)
                      +.   ++.. +...|+++.|+.+| ++.+..++..++++|.+|+........... .|+++.|+.+|.+. +++++..++
T Consensus       192 ~~---~~~~-i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~l~~L~~lL~~~-~~~v~~~a~  265 (528)
T 4b8j_A          192 PK---CRDL-VLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQT-RPALPALARLIHSN-DEEVLTDAC  265 (528)
T ss_dssp             HH---HHHH-HHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHH-TTHHHHHHHHTTCC-CHHHHHHHH
T ss_pred             hh---hHHH-HHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHH-HHHHHHHHHHHCCC-CHHHHHHHH
Confidence            54   3555 66889999999999 566899999999999999988433333334 79999999999988 899999999


Q ss_pred             HHHHHhcCCcchH-HHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhcc-C
Q 015939          244 SILITLSVYRSVK-AQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKV-G  320 (398)
Q Consensus       244 ~aL~~Ls~~~~~~-~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~-~  320 (398)
                      ++|.+|+...+.+ ..+++.|+++.|+.+|.  ++++.++..|+.+|.+|+. .+..++.+. +.|+++.|+.+|..+ +
T Consensus       266 ~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~--~~~~~v~~~a~~~L~nl~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~  342 (528)
T 4b8j_A          266 WALSYLSDGTNDKIQAVIEAGVCPRLVELLL--HPSPSVLIPALRTVGNIVTGDDAQTQCII-DHQALPCLLSLLTQNLK  342 (528)
T ss_dssp             HHHHHHTSSCHHHHHHHHHTTCHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHH-TTTHHHHHHHHHHSCCC
T ss_pred             HHHHHHHcCCHHHHHHHHHcCHHHHHHHHHc--CCChhHHHHHHHHHHHHHcCCHHHHHHHH-HhhhHHHHHHHHcCCCc
Confidence            9999999877655 56679999999999995  4678999999999999998 566777777 579999999999988 9


Q ss_pred             hhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          321 KTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       321 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      +.+++.|+.+|.+|+..  ++.....++..|+++.|+.+|+.+ ++.+|+.|..+|..+..
T Consensus       343 ~~v~~~A~~~L~nl~~~--~~~~~~~~~~~~~i~~L~~lL~~~-~~~v~~~a~~aL~nl~~  400 (528)
T 4b8j_A          343 KSIKKEACWTISNITAG--NKDQIQAVINAGIIGPLVNLLQTA-EFDIKKEAAWAISNATS  400 (528)
T ss_dssp             HHHHHHHHHHHHHHHTS--CHHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCC--CHHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHc
Confidence            99999999999999974  367788889999999999999887 89999999999999887

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=99.94  E-value=9e-25  Score=220.10  Aligned_cols=282  Identities=13%  Similarity=0.130  Sum_probs=240.7

Q ss_pred             HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhh-hhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939           85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCE-ANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE  163 (398)
Q Consensus        85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~-~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~  163 (398)
                      ..++.+++.|.+++.  +.+..|+..|+.++.... .++..+.+. |+++.|+.+|.+ .+ +..++..|+++|.+++.+
T Consensus        74 ~~l~~lv~~L~s~~~--~~~~~A~~~L~~l~s~~~~~~~~~~~~~-g~v~~Lv~lL~~-~~-~~~v~~~A~~~L~~l~~~  148 (528)
T 4b8j_A           74 ESLPAMIGGVYSDDN--NLQLEATTQFRKLLSIERSPPIEEVIQS-GVVPRFVQFLTR-ED-FPQLQFEAAWALTNIASG  148 (528)
T ss_dssp             -CHHHHHHHHTSSCH--HHHHHHHHHHHHHHTCSSSCCHHHHHHT-TCHHHHHHHHTC-TT-CHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHcCCCH--HHHHHHHHHHHHHhcCCCCchHHHHHHC-CCHHHHHHHhCC-CC-CHHHHHHHHHHHHHHhCC
Confidence            347889999987764  488999999999876544 667788888 999999999987 33 246779999999999986


Q ss_pred             cchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHH
Q 015939          164 NGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAI  242 (398)
Q Consensus       164 ~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a  242 (398)
                      .+.   ++.. +...|+++.|+.+|.+++.+++..|+++|.+|+.+ +.++..+.. .|++++|+.+|....++.++..+
T Consensus       149 ~~~---~~~~-~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~-~g~l~~Ll~lL~~~~~~~v~~~a  223 (528)
T 4b8j_A          149 TSE---NTKV-VIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLA-NGALLPLLAQLNEHTKLSMLRNA  223 (528)
T ss_dssp             CHH---HHHH-HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHH-TTCHHHHHHTCCTTCCHHHHHHH
T ss_pred             CHH---HHHH-HHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHH-CCcHHHHHHHHhcCCCHHHHHHH
Confidence            554   3555 67889999999999999999999999999999977 567888877 79999999999544489999999


Q ss_pred             HHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHH-HHHhhccCcHHHHHHHHhccCh
Q 015939          243 LSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGR-LALSEEASCAGRVVERVMKVGK  321 (398)
Q Consensus       243 ~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~-~~i~~~~g~v~~Lv~~l~~~~~  321 (398)
                      +++|.+|+.........+..|+++.|+.+|.  +.++.++..++++|.+|+..+..+ +.+. ..|+++.|+.+|...++
T Consensus       224 ~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~--~~~~~v~~~a~~aL~~l~~~~~~~~~~~~-~~g~v~~Lv~lL~~~~~  300 (528)
T 4b8j_A          224 TWTLSNFCRGKPQPSFEQTRPALPALARLIH--SNDEEVLTDACWALSYLSDGTNDKIQAVI-EAGVCPRLVELLLHPSP  300 (528)
T ss_dssp             HHHHHHHHCSSSCCCHHHHTTHHHHHHHHTT--CCCHHHHHHHHHHHHHHTSSCHHHHHHHH-HTTCHHHHHHHTTCSCH
T ss_pred             HHHHHHHHcCCCCCcHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHcCCHHHHHHHH-HcCHHHHHHHHHcCCCh
Confidence            9999999987655555567899999999995  478999999999999999866555 4555 67999999999999999


Q ss_pred             hHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          322 TAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       322 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      .++..|+.+|.+|+...  +.....+++.|+++.|+.+|+.+.++.+++.|+++|..+..
T Consensus       301 ~v~~~a~~~L~nl~~~~--~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~  358 (528)
T 4b8j_A          301 SVLIPALRTVGNIVTGD--DAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITA  358 (528)
T ss_dssp             HHHHHHHHHHHHHTTSC--HHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHcCC--HHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHC
Confidence            99999999999999853  67888899999999999999866578999999999999986

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.93  E-value=1.5e-25  Score=199.98  Aligned_cols=201  Identities=17%  Similarity=0.176  Sum_probs=173.6

Q ss_pred             CcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC
Q 015939          130 GFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD  209 (398)
Q Consensus       130 g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~  209 (398)
                      -.+|.|+.+|.+ .+.+.+++..|++.|.+++..++.   +|.. +.+.|+||.|+++|++++.++++.|+++|++|+.+
T Consensus         8 ~~i~~lV~lL~s-~~~~~~~q~~Aa~~l~~L~~~~~~---~r~~-I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~   82 (233)
T 3tt9_A            8 MTLERAVSMLEA-DHMLPSRISAAATFIQHECFQKSE---ARKR-VNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFE   82 (233)
T ss_dssp             CCHHHHHHTCCS-SCCCHHHHHHHHHHHHHHHHHCHH---HHHH-HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTT
T ss_pred             ccHHHHHHHhCC-CCchHHHHHHHHHHHHHHHcCCcH---HHHH-HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhC
Confidence            358999999998 665446678899999999976554   4666 77889999999999999999999999999999985


Q ss_pred             -chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcc---c----------
Q 015939          210 -NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSD---S----------  275 (398)
Q Consensus       210 -~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~---~----------  275 (398)
                       +++|..|.+ .|+|++|+++|++..+.++++.|+.+||+|+..+++|..+++. ++++|++++..   .          
T Consensus        83 ~~~nk~~I~~-~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~  160 (233)
T 3tt9_A           83 DNDNKLEVAE-LNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKAN  160 (233)
T ss_dssp             CHHHHHHHHH-TTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCC
T ss_pred             CHHHHHHHHH-cCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCccccccccc
Confidence             889999998 8999999999985338899999999999999999999999875 79999987631   0          


Q ss_pred             -CcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhcc------ChhHHHHHHHHHHHhhcc
Q 015939          276 -RTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKV------GKTAREDAVVVIWSMCCV  337 (398)
Q Consensus       276 -~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~------~~~~~~~a~~~L~~l~~~  337 (398)
                       ..++.++++|.++|+||+. ++++|+.|.+..|+|+.||.+++.+      +++.+|+|+.+|+||+..
T Consensus       161 ~~~~~~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          161 GLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             TTCCHHHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             ccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence             1366899999999999987 6799999997778999999999862      678999999999999974

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.93  E-value=1.5e-24  Score=196.53  Aligned_cols=238  Identities=14%  Similarity=0.188  Sum_probs=211.2

Q ss_pred             HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc
Q 015939           86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG  165 (398)
Q Consensus        86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~  165 (398)
                      .++.+++.|.+++.  +.+..|++.|.+++..++.++..+.+. |+++.|+.+|++ .+  ..++..|+++|.+++.+++
T Consensus         3 ~i~~L~~~L~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~-g~i~~L~~ll~~-~~--~~v~~~a~~~L~~l~~~~~   76 (252)
T 4hxt_A            3 DVEKLVKLLTSTDS--ETQKEAARDLAEIASGPASAIKAIVDA-GGVEVLVKLLTS-TD--SEVQKEAARALANIASGPD   76 (252)
T ss_dssp             HHHHHHHHTTCSCH--HHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTC-SC--HHHHHHHHHHHHHHTTSCH
T ss_pred             cHHHHHHHHcCCCH--HHHHHHHHHHHHHhcCCcHHHHHHHHC-CCHHHHHHHHhC-CC--HHHHHHHHHHHHHHHcCCh
Confidence            47788999988774  488999999999999888899999999 999999999998 44  5677999999999998754


Q ss_pred             hHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhc-CchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHH
Q 015939          166 VKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISL-DNESKRRVLETENLLSALFDYLKLAEDQALNDAILS  244 (398)
Q Consensus       166 ~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~  244 (398)
                      .   ++.. +.+.|+++.|+.+|++++.+++..|+++|.+|+. +++++..+.. .|+++.|+++|++. +++++..+++
T Consensus        77 ~---~~~~-~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~~l~~~-~~~~~~~a~~  150 (252)
T 4hxt_A           77 E---AIKA-IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVD-AGGVEVLVKLLTST-DSEVQKEAAR  150 (252)
T ss_dssp             H---HHHH-HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHH-TTHHHHHHHHTTCS-CHHHHHHHHH
T ss_pred             H---HHHH-HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHHHHHcCC-CHHHHHHHHH
Confidence            4   3555 6789999999999999999999999999999994 5788888887 89999999999998 8999999999


Q ss_pred             HHHHhcCCcc-hHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChh
Q 015939          245 ILITLSVYRS-VKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKT  322 (398)
Q Consensus       245 aL~~Ls~~~~-~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~  322 (398)
                      +|.+|+...+ ++..+++.|+++.|+.+|.  ++++.++..|+++|.+|+. +++.++.+. +.|+++.|++++.++++.
T Consensus       151 ~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~  227 (252)
T 4hxt_A          151 ALANIASGPDEAIKAIVDAGGVEVLVKLLT--STDSEVQKEAARALANIASGPTSAIKAIV-DAGGVEVLQKLLTSTDSE  227 (252)
T ss_dssp             HHHHHTTSCHHHHHHHHHTTHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSBHHHHHHHH-HTTHHHHHHHGGGCSCHH
T ss_pred             HHHHHHcCCHHHHHHHHHCcCHHHHHHHHC--CCCHHHHHHHHHHHHHHHcCCHHHHHHHH-HCCCHHHHHHHHCCCcHH
Confidence            9999998554 5677889999999999995  4788999999999999998 667777777 579999999999999999


Q ss_pred             HHHHHHHHHHHhhccC
Q 015939          323 AREDAVVVIWSMCCVY  338 (398)
Q Consensus       323 ~~~~a~~~L~~l~~~~  338 (398)
                      +++.|+.+|.+|+...
T Consensus       228 v~~~a~~~L~~l~~~~  243 (252)
T 4hxt_A          228 VQKEAQRALENIKSGG  243 (252)
T ss_dssp             HHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHcCC
Confidence            9999999999999764

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.93  E-value=7.7e-25  Score=199.05  Aligned_cols=237  Identities=18%  Similarity=0.202  Sum_probs=207.5

Q ss_pred             CcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC
Q 015939          130 GFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD  209 (398)
Q Consensus       130 g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~  209 (398)
                      ...+.++..|.+ .+..  ++..|+.+|.++...++   .++.. +.+.|+++.|+.+|++++.+++..|+++|.+|+.+
T Consensus        12 ~~~~~~~~~L~s-~~~~--~~~~a~~~L~~~l~~~~---~~~~~-~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~   84 (252)
T 4db8_A           12 SELPQMTQQLNS-DDMQ--EQLSATRKFSQILSDGN---EQIQA-VIDAGALPALVQLLSSPNEQILQEALWALSNIASG   84 (252)
T ss_dssp             CSHHHHHHHHHS-SCSS--HHHHHHHHHHHHHHHHH---HHHHH-HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTS
T ss_pred             chHHHHHHHHcC-CCHH--HHHHHHHHHHHHHcCCC---chHHH-HHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence            568889999998 5554  45999999977665422   23555 67889999999999999999999999999999984


Q ss_pred             -chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchH-HHHHHcCChHHHHHHhcccCcchhhHHHHHH
Q 015939          210 -NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVK-AQLVELGMVQILTRILSDSRTQILTVEKSIK  287 (398)
Q Consensus       210 -~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~-~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~  287 (398)
                       ++++..+.. .|+++.|+.+|+++ ++.++..|+++|.+|+.+.+++ ..+++.|+++.|+++|.  ++++.++..|++
T Consensus        85 ~~~~~~~i~~-~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~--~~~~~v~~~a~~  160 (252)
T 4db8_A           85 GNEQIQAVID-AGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLS--SPNEQILQEALW  160 (252)
T ss_dssp             CHHHHHHHHH-TTHHHHHHHGGGCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGG--CSCHHHHHHHHH
T ss_pred             CHHHHHHHHH-cCCHHHHHHHHcCC-CHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHh--CCCHHHHHHHHH
Confidence             788888887 89999999999998 8999999999999999999888 77889999999999995  468899999999


Q ss_pred             HHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcH
Q 015939          288 MLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEG  366 (398)
Q Consensus       288 ~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~  366 (398)
                      +|.+|+. .++.+..+. +.|+++.|+.++..+++.+++.|+.+|.+++..+  +..+..+.+.|+++.|+.+++.+ ++
T Consensus       161 ~L~~l~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~--~~~~~~~~~~g~i~~L~~ll~~~-~~  236 (252)
T 4db8_A          161 ALSNIASGGNEQIQAVI-DAGALPALVQLLSSPNEQILQEALWALSNIASGG--NEQKQAVKEAGALEKLEQLQSHE-NE  236 (252)
T ss_dssp             HHHHHTTSCHHHHHHHH-HTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHTTTTCS-SS
T ss_pred             HHHHHHcCChHHHHHHH-HCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC--HHHHHHHHHCCcHHHHHHHhCCC-CH
Confidence            9999998 556666666 5799999999999999999999999999999743  67888899999999999999876 88


Q ss_pred             HHHHHHHHHHHHHhc
Q 015939          367 IVRKMCGDLVKVLGK  381 (398)
Q Consensus       367 ~~k~~A~~lL~~l~~  381 (398)
                      .+|+.|..+|..+..
T Consensus       237 ~v~~~A~~~L~~l~~  251 (252)
T 4db8_A          237 KIQKEAQEALEKLQS  251 (252)
T ss_dssp             HHHHTHHHHHHTTC-
T ss_pred             HHHHHHHHHHHHHhc
Confidence            999999999988764

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.92  E-value=2.4e-23  Score=209.91  Aligned_cols=279  Identities=12%  Similarity=0.098  Sum_probs=238.5

Q ss_pred             HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc
Q 015939           86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG  165 (398)
Q Consensus        86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~  165 (398)
                      .++.+++.|.+++. .+.+..|++.|.+++..++.++..+.+. |+++.|+.+|.+ .  +..+++.|+++|.+++.+.+
T Consensus       131 ~i~~Lv~~L~~~~~-~~v~~~A~~~L~~l~~~~~~~~~~~~~~-g~i~~Lv~lL~~-~--~~~vr~~A~~aL~~l~~~~~  205 (530)
T 1wa5_B          131 VVPRLVEFMRENQP-EMLQLEAAWALTNIASGTSAQTKVVVDA-DAVPLFIQLLYT-G--SVEVKEQAIWALGNVAGDST  205 (530)
T ss_dssp             CHHHHHHTTSTTSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHT-TCHHHHHHHHHH-C--CHHHHHHHHHHHHHHHTTCH
T ss_pred             CHHHHHHHhCCCCC-HHHHHHHHHHHHHHhCCCHHHHHHHHHC-CCHHHHHHHHcC-C--CHHHHHHHHHHHHHHhCCCc
Confidence            46778888876522 3478899999999999888888889888 999999999998 4  45677999999999998654


Q ss_pred             hHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCc-hhHHHhhchhhHHHHHHHHhccccCHHHHHHHHH
Q 015939          166 VKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDN-ESKRRVLETENLLSALFDYLKLAEDQALNDAILS  244 (398)
Q Consensus       166 ~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~  244 (398)
                      .   ++.. +...|+++.|+.+|.+.+.+++..|+++|.+|+.+. ........ .|+++.|+.+|.+. ++.++..+++
T Consensus       206 ~---~~~~-~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~-~~~l~~L~~lL~~~-d~~v~~~a~~  279 (530)
T 1wa5_B          206 D---YRDY-VLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVV-SQALPTLAKLIYSM-DTETLVDACW  279 (530)
T ss_dssp             H---HHHH-HHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHH-GGGHHHHHHHTTCC-CHHHHHHHHH
T ss_pred             c---chHH-HHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHH-HhHHHHHHHHHcCC-CHHHHHHHHH
Confidence            4   3555 667899999999999999999999999999999874 44444444 79999999999988 8999999999


Q ss_pred             HHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChh
Q 015939          245 ILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKT  322 (398)
Q Consensus       245 aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~  322 (398)
                      +|.+|+... +....+++.|+++.|+.+|.  +.++.++..|+.+|.+|+. .+...+.+. +.|+++.|+.+|..++..
T Consensus       280 ~L~~L~~~~~~~~~~~~~~~~v~~Lv~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~  356 (530)
T 1wa5_B          280 AISYLSDGPQEAIQAVIDVRIPKRLVELLS--HESTLVQTPALRAVGNIVTGNDLQTQVVI-NAGVLPALRLLLSSPKEN  356 (530)
T ss_dssp             HHHHHHSSCHHHHHHHHHTTCHHHHHHGGG--CSCHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHTTCSCHH
T ss_pred             HHHHHhCCCHHHHHHHHhcCcHHHHHHHHC--CCChhhHHHHHHHHHHHHcCCHHHHHHHH-HcchHHHHHHHHcCCCHH
Confidence            999999765 46777789999999999995  4688999999999999997 456666666 569999999999999999


Q ss_pred             HHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          323 AREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       323 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      +++.|+.+|.+++..+  ++....+++.|+++.|+.+|+.+ ++.+|..|.++|..+..
T Consensus       357 vr~~A~~aL~~l~~~~--~~~~~~~~~~~~l~~L~~lL~~~-~~~v~~~a~~aL~~l~~  412 (530)
T 1wa5_B          357 IKKEACWTISNITAGN--TEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASS  412 (530)
T ss_dssp             HHHHHHHHHHHHTTSC--HHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHh
Confidence            9999999999999753  56777788999999999999876 89999999999999976

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=99.92  E-value=1.8e-23  Score=210.86  Aligned_cols=280  Identities=15%  Similarity=0.174  Sum_probs=239.9

Q ss_pred             HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhh-hhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939           85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATG-CEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE  163 (398)
Q Consensus        85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~-~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~  163 (398)
                      ..++.+++.|.+++.  +.+..|+..|+.+... +..++..+.+. |+++.|+.+|.+ .+ +..++..|+++|.+++..
T Consensus        87 ~~i~~lv~~L~s~~~--~~~~~A~~~L~~ll~~~~~~~~~~~~~~-g~i~~Lv~~L~~-~~-~~~v~~~A~~~L~~l~~~  161 (530)
T 1wa5_B           87 QELPQMTQQLNSDDM--QEQLSATVKFRQILSREHRPPIDVVIQA-GVVPRLVEFMRE-NQ-PEMLQLEAAWALTNIASG  161 (530)
T ss_dssp             CCHHHHHHHHSCSSH--HHHHHHHHHHHHHTCCSSSCSHHHHHHT-TCHHHHHHTTST-TS-CHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHcCCCH--HHHHHHHHHHHHHhCCCCCccHHHHHHC-CCHHHHHHHhCC-CC-CHHHHHHHHHHHHHHhCC
Confidence            347889999987764  4889999999998754 34556777888 999999999987 31 456779999999999986


Q ss_pred             cchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHH
Q 015939          164 NGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAI  242 (398)
Q Consensus       164 ~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a  242 (398)
                      .+.   .+.. +...|+++.|+.+|.+++.+++..|+++|.+|+.+ ++++..+.. .|+++.|+.+|.+. ++.++..+
T Consensus       162 ~~~---~~~~-~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~-~~~l~~L~~ll~~~-~~~v~~~a  235 (530)
T 1wa5_B          162 TSA---QTKV-VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQ-CNAMEPILGLFNSN-KPSLIRTA  235 (530)
T ss_dssp             CHH---HHHH-HHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHGGGSC-CHHHHHHH
T ss_pred             CHH---HHHH-HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHH-cCcHHHHHHHhccC-CHHHHHHH
Confidence            554   2444 66889999999999999999999999999999987 678888777 79999999999986 89999999


Q ss_pred             HHHHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCC-HHHHHHHhhccCcHHHHHHHHhccC
Q 015939          243 LSILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATC-SEGRLALSEEASCAGRVVERVMKVG  320 (398)
Q Consensus       243 ~~aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~-~~~~~~i~~~~g~v~~Lv~~l~~~~  320 (398)
                      +++|.+|+.+. .........|+++.|+.+|.  +.++.++..++++|.+|+.. ++.+..+. ..|+++.|+.++...+
T Consensus       236 ~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~--~~d~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~~v~~Lv~lL~~~~  312 (530)
T 1wa5_B          236 TWTLSNLCRGKKPQPDWSVVSQALPTLAKLIY--SMDTETLVDACWAISYLSDGPQEAIQAVI-DVRIPKRLVELLSHES  312 (530)
T ss_dssp             HHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTT--CCCHHHHHHHHHHHHHHHSSCHHHHHHHH-HTTCHHHHHHGGGCSC
T ss_pred             HHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHc--CCCHHHHHHHHHHHHHHhCCCHHHHHHHH-hcCcHHHHHHHHCCCC
Confidence            99999999765 55555667899999999995  46889999999999999974 56677777 5699999999999999


Q ss_pred             hhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          321 KTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       321 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      +.++..|+.+|.+++...  +.....+++.|+++.|+.+|+.+ +..+|+.|.++|..++.
T Consensus       313 ~~v~~~a~~~L~~l~~~~--~~~~~~~~~~~~l~~L~~lL~~~-~~~vr~~A~~aL~~l~~  370 (530)
T 1wa5_B          313 TLVQTPALRAVGNIVTGN--DLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITA  370 (530)
T ss_dssp             HHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTT
T ss_pred             hhhHHHHHHHHHHHHcCC--HHHHHHHHHcchHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence            999999999999999753  56778888999999999999877 79999999999999986

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.92  E-value=9.9e-23  Score=200.37  Aligned_cols=279  Identities=15%  Similarity=0.151  Sum_probs=236.3

Q ss_pred             HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939           85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN  164 (398)
Q Consensus        85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~  164 (398)
                      +.++.+++.|.+++. .+.+..|++.|.+++..++.++..+.+. |+++.|+.+|++ .  +..+++.|+++|.+++.+.
T Consensus        64 ~~i~~L~~~L~~~~~-~~v~~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~lL~~-~--~~~vr~~a~~~L~~l~~~~  138 (450)
T 2jdq_A           64 GVVARFVEFLKRKEN-CTLQFESAWVLTNIASGNSLQTRIVIQA-GAVPIFIELLSS-E--FEDVQEQAVWALGNIAGDS  138 (450)
T ss_dssp             THHHHHHHHHTCTTC-HHHHHHHHHHHHHHHSSCHHHHHHHHHT-THHHHHHHHTTC-S--CHHHHHHHHHHHHHHHTTC
T ss_pred             CcHHHHHHHHCCCCC-HHHHHHHHHHHHHHhcCCHHHHHHHHhC-CCHHHHHHHHcC-C--CHHHHHHHHHHHHHHccCC
Confidence            467888888887732 3488899999999998777777778888 999999999998 4  4567799999999999866


Q ss_pred             chHHHhhHhhhccCCChHHHHHHHhc-CChhhHHHHHHHHHHhhcCc--hhHHHhhchhhHHHHHHHHhccccCHHHHHH
Q 015939          165 GVKEKLNRLILNTYNCLPLFLEILRE-GNLDSKIGSIKILDSISLDN--ESKRRVLETENLLSALFDYLKLAEDQALNDA  241 (398)
Q Consensus       165 ~~~~~~~~~il~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~L~~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~  241 (398)
                      +.   ++.. +...|+++.|+.+|++ .+.+++..|+++|.+|+.+.  ..+..+.  .++++.|+.+|++. ++.++..
T Consensus       139 ~~---~~~~-~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~--~~~l~~L~~~l~~~-~~~v~~~  211 (450)
T 2jdq_A          139 TM---CRDY-VLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAKV--SPCLNVLSWLLFVS-DTDVLAD  211 (450)
T ss_dssp             HH---HHHH-HHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGGT--GGGHHHHHHHTTCC-CHHHHHH
T ss_pred             HH---HHHH-HHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHHH--HHHHHHHHHHHccC-CHHHHHH
Confidence            54   3555 6678999999999996 58999999999999999763  3333332  68999999999988 8899999


Q ss_pred             HHHHHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCH-HHHHHHhhccCcHHHHHHHHhcc
Q 015939          242 ILSILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCS-EGRLALSEEASCAGRVVERVMKV  319 (398)
Q Consensus       242 a~~aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~-~~~~~i~~~~g~v~~Lv~~l~~~  319 (398)
                      ++++|.+|+... +++..+++.|+++.|+.+|.  +.++.++..|+.+|.+|+... ..++.+. +.|+++.|+.++.+.
T Consensus       212 a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~ll~~~  288 (450)
T 2jdq_A          212 ACWALSYLSDGPNDKIQAVIDAGVCRRLVELLM--HNDYKVVSPALRAVGNIVTGDDIQTQVIL-NCSALQSLLHLLSSP  288 (450)
T ss_dssp             HHHHHHHHTSSSHHHHHHHHHTTTHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHH-TTTHHHHHHHHTTCS
T ss_pred             HHHHHHHHHCCCcHHHHHHHHcCcHHHHHHHHC--CCchhHHHHHHHHHHHHhhCChHHHHHHH-HCccHHHHHHHHcCC
Confidence            999999999865 56777789999999999995  478899999999999999854 4555566 569999999999999


Q ss_pred             ChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          320 GKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       320 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      ++.+++.|+.+|.+++..+  ++....+++.|+++.|+.+|+.+ ++.+|+.|..+|..+..
T Consensus       289 ~~~vr~~a~~~L~~l~~~~--~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~L~~l~~  347 (450)
T 2jdq_A          289 KESIKKEACWTISNITAGN--RAQIQTVIDANIFPALISILQTA-EFRTRKEAAWAITNATS  347 (450)
T ss_dssp             SHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHHHHHS-CHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCC--HHHHHHHHHCCCHHHHHHHHhcC-CHHHHHHHHHHHHHHHc
Confidence            9999999999999999743  67777888899999999999876 79999999999999875

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.92  E-value=1.7e-23  Score=210.25  Aligned_cols=279  Identities=16%  Similarity=0.121  Sum_probs=239.8

Q ss_pred             HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939           85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN  164 (398)
Q Consensus        85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~  164 (398)
                      +.++.+++.|.++.. ++.+..|+..|.+++.. +.++..+.+. |+++.|+.+|++ .+  ..++..|+++|.+++.++
T Consensus        59 ~~i~~Lv~~L~~~~~-~~~~~~a~~~L~~ls~~-~~~~~~i~~~-g~i~~L~~lL~~-~~--~~v~~~a~~~L~~l~~~~  132 (529)
T 1jdh_A           59 QMVSAIVRTMQNTND-VETARCTAGTLHNLSHH-REGLLAIFKS-GGIPALVKMLGS-PV--DSVLFYAITTLHNLLLHQ  132 (529)
T ss_dssp             HHHHHHHHHHHHCCC-HHHHHHHHHHHHHHTTS-HHHHHHHHHT-THHHHHHHHTTC-SC--HHHHHHHHHHHHHHHHHC
T ss_pred             chHHHHHHHHhcCCC-HHHHHHHHHHHHHHHcC-chhHHHHHHc-CCHHHHHHHHcC-CC--HHHHHHHHHHHHHHhcCC
Confidence            467888888876532 34788999999999876 5599999999 999999999988 44  567799999999999875


Q ss_pred             chHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHH
Q 015939          165 GVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAIL  243 (398)
Q Consensus       165 ~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~  243 (398)
                      +.   .+.. +.+.|+++.|+++|++++.+++..++.+|.+++.. ++++..+.. .|+++.|+++|+++.+...+..++
T Consensus       133 ~~---~~~~-i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~-~~~i~~L~~ll~~~~~~~~~~~a~  207 (529)
T 1jdh_A          133 EG---AKMA-VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTS  207 (529)
T ss_dssp             TT---HHHH-HHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             cc---hHHH-HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHH-CCCHHHHHHHHHhCChHHHHHHHH
Confidence            54   2444 66889999999999999999999999999999986 788888887 799999999999886677888999


Q ss_pred             HHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhH
Q 015939          244 SILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTA  323 (398)
Q Consensus       244 ~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~  323 (398)
                      .+|++|+.+++++..+++.|+++.|++++.+  .++.+++.++++|.+|+.......  . ..|+++.|++++.+.++.+
T Consensus       208 ~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~--~~~~~~~~a~~~L~~l~~~~~~~~--~-~~~~i~~L~~ll~~~~~~v  282 (529)
T 1jdh_A          208 RVLKVLSVCSSNKPAIVEAGGMQALGLHLTD--PSQRLVQNCLWTLRNLSDAATKQE--G-MEGLLGTLVQLLGSDDINV  282 (529)
T ss_dssp             HHHHHHTTSTTHHHHHHHTTHHHHHHTTTTS--SCHHHHHHHHHHHHHHHTTCTTCS--C-CHHHHHHHHHHTTCSCHHH
T ss_pred             HHHHHHhcCcccHHHHHHCCCHHHHHHHHhC--CChHHHHHHHHHHHHHhcCChhhH--H-HHhHHHHHHHHHcCCCHHH
Confidence            9999999999999999999999999999954  688999999999999998543221  2 2488999999999999999


Q ss_pred             HHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhc-CcHHHHHHHHHHHHHHhc
Q 015939          324 REDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSE-NEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       324 ~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~-~~~~~k~~A~~lL~~l~~  381 (398)
                      ++.|+.+|.+|+..+  ++.+..+.+.|+++.|+.+|... .++.+++.|..+|..+..
T Consensus       283 ~~~a~~~L~~L~~~~--~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~  339 (529)
T 1jdh_A          283 VTCAAGILSNLTCNN--YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS  339 (529)
T ss_dssp             HHHHHHHHHHHTTTC--HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHhcCC--HHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHc
Confidence            999999999999853  67889999999999999999764 247999999999999875

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.92  E-value=1e-22  Score=200.32  Aligned_cols=280  Identities=13%  Similarity=0.121  Sum_probs=238.2

Q ss_pred             HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939           85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN  164 (398)
Q Consensus        85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~  164 (398)
                      +.++.+++.+++++.  +.+..|++.|.+++..++.++..+.+. |+++.|+.+|.+  +.+..++..|+++|.+++.+.
T Consensus       107 ~~i~~L~~lL~~~~~--~vr~~a~~~L~~l~~~~~~~~~~~~~~-~~i~~L~~~l~~--~~~~~v~~~a~~~L~~l~~~~  181 (450)
T 2jdq_A          107 GAVPIFIELLSSEFE--DVQEQAVWALGNIAGDSTMCRDYVLDC-NILPPLLQLFSK--QNRLTMTRNAVWALSNLCRGK  181 (450)
T ss_dssp             THHHHHHHHTTCSCH--HHHHHHHHHHHHHHTTCHHHHHHHHHT-TCHHHHHHHTTS--CCCHHHHHHHHHHHHHHHCCS
T ss_pred             CCHHHHHHHHcCCCH--HHHHHHHHHHHHHccCCHHHHHHHHHC-CCHHHHHHHhcC--CCCHHHHHHHHHHHHHHhCCC
Confidence            357778888887654  388899999999999888899999988 999999999985  234567899999999999765


Q ss_pred             -chHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHH
Q 015939          165 -GVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAI  242 (398)
Q Consensus       165 -~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a  242 (398)
                       +.   .+.. + ..++++.|+.+|++++.+++..++++|.+|+.. ++....+.. .|+++.|+.+|.+. +++++..+
T Consensus       182 ~~~---~~~~-~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~-~~~i~~L~~ll~~~-~~~v~~~a  254 (450)
T 2jdq_A          182 SPP---PEFA-K-VSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVID-AGVCRRLVELLMHN-DYKVVSPA  254 (450)
T ss_dssp             SSC---CCGG-G-TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTSSSHHHHHHHHH-TTTHHHHHHHTTCS-CHHHHHHH
T ss_pred             CCC---CCHH-H-HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHCCCcHHHHHHHH-cCcHHHHHHHHCCC-chhHHHHH
Confidence             22   1222 2 378999999999999999999999999999987 456666666 79999999999987 89999999


Q ss_pred             HHHHHHhcCCcc-hHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccC
Q 015939          243 LSILITLSVYRS-VKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVG  320 (398)
Q Consensus       243 ~~aL~~Ls~~~~-~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~  320 (398)
                      +++|.+++...+ .+..+++.|+++.|+.+|.+  +++.++..|+++|.+|+. +++..+.+. +.|+++.|+.++.+++
T Consensus       255 ~~~L~~l~~~~~~~~~~~~~~~~l~~L~~ll~~--~~~~vr~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~~~  331 (450)
T 2jdq_A          255 LRAVGNIVTGDDIQTQVILNCSALQSLLHLLSS--PKESIKKEACWTISNITAGNRAQIQTVI-DANIFPALISILQTAE  331 (450)
T ss_dssp             HHHHHHHTTSCHHHHHHHHTTTHHHHHHHHTTC--SSHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHHHHSC
T ss_pred             HHHHHHHhhCChHHHHHHHHCccHHHHHHHHcC--CCHHHHHHHHHHHHHHHcCCHHHHHHHH-HCCCHHHHHHHHhcCC
Confidence            999999998765 45556789999999999954  688999999999999996 677777777 4699999999999999


Q ss_pred             hhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          321 KTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       321 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      +.++..|+.+|.+++... +++....+++.|+++.|+.+++.+ ++.+++.|..+|..+..
T Consensus       332 ~~v~~~a~~~L~~l~~~~-~~~~~~~l~~~~~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~  390 (450)
T 2jdq_A          332 FRTRKEAAWAITNATSGG-SAEQIKYLVELGCIKPLCDLLTVM-DSKIVQVALNGLENILR  390 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHC-CHHHHHHHHHHTCHHHHHHGGGSS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCC-CHHHHHHHHHCCCHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            999999999999999752 356777788999999999999876 78999999999988876

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.91  E-value=3.9e-23  Score=213.22  Aligned_cols=279  Identities=16%  Similarity=0.124  Sum_probs=239.5

Q ss_pred             HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939           85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN  164 (398)
Q Consensus        85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~  164 (398)
                      +.++.+++.|.++.. .+.+..|+..|..++.. +.++..+.+. |+++.|+.+|++ .+  ..++..|+.+|.+++...
T Consensus        56 ~~i~~Lv~~L~~~~~-~~~~~~A~~~L~~Ls~~-~~~~~~i~~~-g~i~~Lv~lL~~-~~--~~v~~~A~~aL~nL~~~~  129 (644)
T 2z6h_A           56 QMVSAIVRTMQNTND-VETARCTAGTLHNLSHH-REGLLAIFKS-GGIPALVKMLGS-PV--DSVLFYAITTLHNLLLHQ  129 (644)
T ss_dssp             HHHHHHHHHHHSCCC-HHHHHHHHHHHHHHTTS-HHHHHHHHTT-THHHHHHHHTTC-SS--HHHHHHHHHHHHHHHHHS
T ss_pred             ChHHHHHHHHhcCCC-HHHHHHHHHHHHHHhcC-hhhHHHHHHc-CCHHHHHHHHhC-CC--HHHHHHHHHHHHHHHhCc
Confidence            557888999986532 34788999999999877 4599999999 999999999988 43  567799999999999875


Q ss_pred             chHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhc-CchhHHHhhchhhHHHHHHHHhccccCHHHHHHHH
Q 015939          165 GVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISL-DNESKRRVLETENLLSALFDYLKLAEDQALNDAIL  243 (398)
Q Consensus       165 ~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~  243 (398)
                      +.   .+.. +.+.|+++.|+++|++++...+..++.+|.+|+. +++++..+.. .|+++.|+++|++......+..++
T Consensus       130 ~~---~~~~-v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~La~~~~~~~~~i~~-~g~v~~Lv~lL~~~~~~~~~~~a~  204 (644)
T 2z6h_A          130 EG---AKMA-VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTS  204 (644)
T ss_dssp             TT---HHHH-HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             ch---hHHH-HHHCCChHHHHHHHCcCCHHHHHHHHHHHHHHHhcCcHHHHHHHH-cCChHHHHHHHHcCChHHHHHHHH
Confidence            44   2444 6688999999999999998888888999999997 5789999888 799999999999886677889999


Q ss_pred             HHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhH
Q 015939          244 SILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTA  323 (398)
Q Consensus       244 ~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~  323 (398)
                      .+|++|+.+.+++..+++.|+++.|++++.+  .+..+++.++++|.+|+......  .. ..|+++.|+.++...++.+
T Consensus       205 ~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~--~~~~~~~~a~~~L~nL~~~~~~~--~~-~~~~i~~Lv~lL~~~d~~v  279 (644)
T 2z6h_A          205 RVLKVLSVCSSNKPAIVEAGGMQALGLHLTD--PSQRLVQNCLWTLRNLSDAATKQ--EG-MEGLLGTLVQLLGSDDINV  279 (644)
T ss_dssp             HHHHHHTTCTTHHHHHHHTTHHHHHHTTTTC--SCHHHHHHHHHHHHHHGGGCTTC--CS-CHHHHHHHHHHTTCSCHHH
T ss_pred             HHHHHHhcCcccHHHHHHCCCHHHHHHHHhc--CCHHHHHHHHHHHHHHhhcchhh--hh-hhhHHHHHHHHHcCCCHHH
Confidence            9999999999999999999999999999954  68899999999999999743221  12 2478999999999999999


Q ss_pred             HHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCc-HHHHHHHHHHHHHHhc
Q 015939          324 REDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENE-GIVRKMCGDLVKVLGK  381 (398)
Q Consensus       324 ~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~-~~~k~~A~~lL~~l~~  381 (398)
                      ++.|+.+|.+|+..+  ++.+..+.+.|+++.|+.+|....+ +.+++.|..+|..+..
T Consensus       280 ~~~a~~aL~~L~~~~--~~~~~~v~~~g~v~~Lv~lL~~~~~~~~v~~~a~~aL~nL~~  336 (644)
T 2z6h_A          280 VTCAAGILSNLTCNN--YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS  336 (644)
T ss_dssp             HHHHHHHHHHHHTTC--HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHcCC--HHHHHHHHHcCCHHHHHHHHHccCCcHHHHHHHHHHHHHHhc
Confidence            999999999999853  6788899999999999999987533 7999999999999965

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.91  E-value=1.7e-22  Score=178.36  Aligned_cols=197  Identities=18%  Similarity=0.215  Sum_probs=176.3

Q ss_pred             cCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC-Ccc
Q 015939          177 TYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV-YRS  254 (398)
Q Consensus       177 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~  254 (398)
                      ..+..+.|+.+|++++.+++..|+++|.+|+.. ++.+..+.+ .|+++.|+.+|+++ +++++..|+++|.+|+. +++
T Consensus        10 ~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~-~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~   87 (210)
T 4db6_A           10 HGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVID-AGALPALVQLLSSP-NEQILQEALWALSNIASGGNE   87 (210)
T ss_dssp             ---CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHH-TTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHH
T ss_pred             ccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH-cCCHHHHHHHHcCC-CHHHHHHHHHHHHHHhcCCcH
Confidence            468899999999999999999999999999955 778888887 89999999999998 89999999999999995 557


Q ss_pred             hHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHH
Q 015939          255 VKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWS  333 (398)
Q Consensus       255 ~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~  333 (398)
                      ++..+++.|+++.|+.+|+  ++++.+++.|+++|.+|+. .++.+..+. +.|+++.|+.++.++++.+++.|+.+|.+
T Consensus        88 ~~~~i~~~g~i~~L~~lL~--~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~aL~~  164 (210)
T 4db6_A           88 QIQAVIDAGALPALVQLLS--SPNEQILQEALWALSNIASGGNEQIQAVI-DAGALPALVQLLSSPNEQILQEALWALSN  164 (210)
T ss_dssp             HHHHHHHTTCHHHHHHHTT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHc--CCcHHHHHHHHHHHHHHHcCCHHHHHHHH-HcCcHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            8888999999999999995  4689999999999999996 566667777 57999999999999999999999999999


Q ss_pred             hhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          334 MCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       334 l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      ++..+  ++.+..+.+.|+++.|+.+++++ ++.+|+.|..+|..|++
T Consensus       165 l~~~~--~~~~~~~~~~g~i~~L~~ll~~~-~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          165 IASGG--NEQKQAVKEAGALEKLEQLQSHE-NEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHTSC--HHHHHHHHHTTHHHHHHHGGGCS-CHHHHHHHHHHHHHHCC
T ss_pred             HHcCC--cHHHHHHHHCCCHHHHHHHHhCC-CHHHHHHHHHHHHHHhc
Confidence            99853  67888999999999999999866 89999999999999875

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.90  E-value=3e-22  Score=201.17  Aligned_cols=280  Identities=15%  Similarity=0.155  Sum_probs=235.6

Q ss_pred             HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939           85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN  164 (398)
Q Consensus        85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~  164 (398)
                      +.++.+++.|++++.+  .+..|++.|.+++..++.++..+.+. |+++.|+.+|++ .  +.++...++.+|.+++..+
T Consensus       101 g~i~~L~~lL~~~~~~--v~~~a~~~L~~l~~~~~~~~~~i~~~-g~i~~L~~ll~~-~--~~~~~~~~~~~L~~la~~~  174 (529)
T 1jdh_A          101 GGIPALVKMLGSPVDS--VLFYAITTLHNLLLHQEGAKMAVRLA-GGLQKMVALLNK-T--NVKFLAITTDCLQILAYGN  174 (529)
T ss_dssp             THHHHHHHHTTCSCHH--HHHHHHHHHHHHHHHCTTHHHHHHHH-THHHHHHHGGGC-C--CHHHHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHcCCCHH--HHHHHHHHHHHHhcCCcchHHHHHHc-CCHHHHHHHHhc-C--CHHHHHHHHHHHHHHHhCC
Confidence            3577888888877644  88899999999998878889999888 999999999987 3  3566788889999998754


Q ss_pred             chHHHhhHhhhccCCChHHHHHHHhcCC-hhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHH
Q 015939          165 GVKEKLNRLILNTYNCLPLFLEILREGN-LDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAIL  243 (398)
Q Consensus       165 ~~~~~~~~~il~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~  243 (398)
                      ++   ++.. +.+.|+++.|+.+|++++ ...+..++.+|.+|+.+++++..+.. .|+++.|+.+++++ ++++++.++
T Consensus       175 ~~---~~~~-i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~-~g~~~~L~~ll~~~-~~~~~~~a~  248 (529)
T 1jdh_A          175 QE---SKLI-ILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVE-AGGMQALGLHLTDP-SQRLVQNCL  248 (529)
T ss_dssp             HH---HHHH-HHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHH-TTHHHHHHTTTTSS-CHHHHHHHH
T ss_pred             HH---HHHH-HHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHH-CCCHHHHHHHHhCC-ChHHHHHHH
Confidence            44   4565 667899999999999874 45667789999999999999999988 89999999999998 899999999


Q ss_pred             HHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCC-HHHHHHHhhccCcHHHHHHHHhcc--C
Q 015939          244 SILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATC-SEGRLALSEEASCAGRVVERVMKV--G  320 (398)
Q Consensus       244 ~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~-~~~~~~i~~~~g~v~~Lv~~l~~~--~  320 (398)
                      ++|.+|+.......  ...|+++.|+++|.  +.++.+++.|+++|.+|+.. ++++..+. +.|+++.|+.++...  +
T Consensus       249 ~~L~~l~~~~~~~~--~~~~~i~~L~~ll~--~~~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~~v~~L~~ll~~~~~~  323 (529)
T 1jdh_A          249 WTLRNLSDAATKQE--GMEGLLGTLVQLLG--SDDINVVTCAAGILSNLTCNNYKNKMMVC-QVGGIEALVRTVLRAGDR  323 (529)
T ss_dssp             HHHHHHHTTCTTCS--CCHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTTTCHHHHHHHH-HTTHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCChhhH--HHHhHHHHHHHHHc--CCCHHHHHHHHHHHHHHhcCCHHHHHHHH-HcCChHHHHHHHHccCCH
Confidence            99999987653321  23478999999994  47899999999999999885 67888888 579999999999863  3


Q ss_pred             hhHHHHHHHHHHHhhccCCC-hhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          321 KTAREDAVVVIWSMCCVYKD-ARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       321 ~~~~~~a~~~L~~l~~~~~~-~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      +.+++.|+.+|++|+...++ +..+..+.+.|+++.|+.+|+.+.++.+++.|.++|..+..
T Consensus       324 ~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~  385 (529)
T 1jdh_A          324 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLAL  385 (529)
T ss_dssp             HHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhc
Confidence            79999999999999976432 23677889999999999999887556899999999999886

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.90  E-value=3.8e-23  Score=184.34  Aligned_cols=196  Identities=13%  Similarity=0.165  Sum_probs=170.9

Q ss_pred             CChHHHHHHHhcCCh--hhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC-Ccc
Q 015939          179 NCLPLFLEILREGNL--DSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV-YRS  254 (398)
Q Consensus       179 g~i~~Lv~lL~~~~~--~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~  254 (398)
                      -.++.++++|+++++  +++..|++.|.+|+.. ++++..+.. .|+||+||++|+++ ++++++.|+++|.||+. +++
T Consensus         8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~-~G~Ip~LV~lL~s~-~~~vq~~Aa~aL~nLa~~~~~   85 (233)
T 3tt9_A            8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQ-LRGILKLLQLLKVQ-NEDVQRAVCGALRNLVFEDND   85 (233)
T ss_dssp             CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHH-TTHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTCHH
T ss_pred             ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHH-cCCHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHH
Confidence            468999999999988  8889999999999964 789999988 89999999999998 89999999999999997 578


Q ss_pred             hHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHh---c-------------
Q 015939          255 VKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVM---K-------------  318 (398)
Q Consensus       255 ~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~---~-------------  318 (398)
                      |+..++++|+||.|+++|++ +.+.++++.|.++|.+|+..++++..|..  ++++.|+.++.   .             
T Consensus        86 nk~~I~~~GaI~~Lv~lL~~-~~~~~~~e~a~~aL~nLS~~~~~k~~i~~--~~i~~Lv~ll~~p~sG~~~~~~~~~~~~  162 (233)
T 3tt9_A           86 NKLEVAELNGVPRLLQVLKQ-TRDLETKKQITGLLWNLSSNDKLKNLMIT--EALLTLTENIIIPFSGWPEGDYPKANGL  162 (233)
T ss_dssp             HHHHHHHTTHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHTSGGGHHHHHH--HHHHHHCCCCCHHHHCCCGGGCCCCCTT
T ss_pred             HHHHHHHcCCHHHHHHHHcc-CCCHHHHHHHHHHHHHHHcChhhHHHHHh--ccHHHHHHHHhccccCCccccccccccc
Confidence            99999999999999999962 35789999999999999999999999984  57999998653   1             


Q ss_pred             cChhHHHHHHHHHHHhhccCCChhHHHHHHhc-CCHHHHHHHHhhc-----CcHHHHHHHHHHHHHHhc
Q 015939          319 VGKTAREDAVVVIWSMCCVYKDARVKEAVVNS-NGLTKLLLVMQSE-----NEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       319 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~-g~~~~Ll~~l~~~-----~~~~~k~~A~~lL~~l~~  381 (398)
                      .+..++++|..+|.+|+..  +++.+..+.+. |+|+.|+.+++..     .+.+.+|+|..+|++|+-
T Consensus       163 ~~~~v~~na~~~L~nLss~--~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~  229 (233)
T 3tt9_A          163 LDFDIFYNVTGCLRNMSSA--GADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSY  229 (233)
T ss_dssp             CCHHHHHHHHHHHHHHTTS--CHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCC
T ss_pred             chHHHHHHHHHHHHHHhcC--CHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHh
Confidence            1558999999999999974  36889999876 6689999999763     355899999999999873

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.90  E-value=2.2e-22  Score=207.62  Aligned_cols=277  Identities=13%  Similarity=0.120  Sum_probs=235.1

Q ss_pred             HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939           85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN  164 (398)
Q Consensus        85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~  164 (398)
                      +.++.|++.|++.+..  .+..|+..|.+++.+. .++..+...+|+++.|+.+|.+ . .+..++..|+.+|.+++.+.
T Consensus        14 g~i~~Lv~lL~~~~~~--vr~~A~~~L~~La~~~-~~~~~i~~~~~~i~~Lv~~L~~-~-~~~~~~~~A~~~L~~Ls~~~   88 (644)
T 2z6h_A           14 RAIPELTKLLNDEDQV--VVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQN-T-NDVETARCTAGTLHNLSHHR   88 (644)
T ss_dssp             TTHHHHHHHHTCSCHH--HHHHHHHHHHHHHTST-THHHHHTTCHHHHHHHHHHHHS-C-CCHHHHHHHHHHHHHHTTSH
T ss_pred             chHHHHHHHHcCCCHH--HHHHHHHHHHHHHCCC-hhHHHHHhccChHHHHHHHHhc-C-CCHHHHHHHHHHHHHHhcCh
Confidence            3478888888866544  8899999999999775 4666666544899999999987 3 24567799999999998764


Q ss_pred             chHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHH
Q 015939          165 GVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAIL  243 (398)
Q Consensus       165 ~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~  243 (398)
                      +    ++.. +.+.|+++.|+.+|++++.+++..|+++|.+|+.+ ++.+..+.. .|+++.|+++|+++ +++.+..++
T Consensus        89 ~----~~~~-i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~-~g~i~~Lv~lL~~~-~~~~~~~a~  161 (644)
T 2z6h_A           89 E----GLLA-IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKT-NVKFLAITT  161 (644)
T ss_dssp             H----HHHH-HHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHH-TTHHHHHHHGGGCC-CHHHHHHHH
T ss_pred             h----hHHH-HHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHH-CCChHHHHHHHCcC-CHHHHHHHH
Confidence            4    3666 66789999999999999999999999999999987 566667766 89999999999998 788899999


Q ss_pred             HHHHHhcC-CcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChh
Q 015939          244 SILITLSV-YRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKT  322 (398)
Q Consensus       244 ~aL~~Ls~-~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~  322 (398)
                      .+|.+|+. +++++..+++.|+++.|+.+|++ .....+++.++.+|.+|+.+++++..+. ..|+++.|+.++..++..
T Consensus       162 ~~L~~La~~~~~~~~~i~~~g~v~~Lv~lL~~-~~~~~~~~~a~~~L~nLs~~~~~~~~l~-~~g~l~~L~~ll~~~~~~  239 (644)
T 2z6h_A          162 DCLQILAYGNQESKLIILASGGPQALVNIMRT-YTYEKLLWTTSRVLKVLSVCSSNKPAIV-EAGGMQALGLHLTDPSQR  239 (644)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTT-CCCHHHHHHHHHHHHHHTTCTTHHHHHH-HTTHHHHHHTTTTCSCHH
T ss_pred             HHHHHHHhcCcHHHHHHHHcCChHHHHHHHHc-CChHHHHHHHHHHHHHHhcCcccHHHHH-HCCCHHHHHHHHhcCCHH
Confidence            99999996 67899999999999999999974 3456788999999999999999999999 469999999999999999


Q ss_pred             HHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          323 AREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       323 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      +++.++.+|.+++.......     ...|+++.|+.+|.++ ++.+++.|+.+|..|+.
T Consensus       240 ~~~~a~~~L~nL~~~~~~~~-----~~~~~i~~Lv~lL~~~-d~~v~~~a~~aL~~L~~  292 (644)
T 2z6h_A          240 LVQNCLWTLRNLSDAATKQE-----GMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTC  292 (644)
T ss_dssp             HHHHHHHHHHHHGGGCTTCC-----SCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhcchhhh-----hhhhHHHHHHHHHcCC-CHHHHHHHHHHHHHHHc
Confidence            99999999999997643211     2237899999999866 79999999999998876

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.89  E-value=8.1e-22  Score=207.19  Aligned_cols=279  Identities=16%  Similarity=0.122  Sum_probs=236.2

Q ss_pred             HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939           85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN  164 (398)
Q Consensus        85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~  164 (398)
                      +.++.+++.|.++.. .+.+..|+..|.+++.. +.++..+.+. |+++.|+.+|++ .+  ..++..|+.+|.+++.+.
T Consensus       192 ~~i~~Lv~~L~~~~d-~~vr~~Aa~aL~~Ls~~-~~~~~~i~~~-g~I~~Lv~lL~~-~~--~~v~~~A~~aL~nLa~~~  265 (780)
T 2z6g_A          192 QMVSAIVRTMQNTND-VETARCTSGTLHNLSHH-REGLLAIFKS-GGIPALVNMLGS-PV--DSVLFHAITTLHNLLLHQ  265 (780)
T ss_dssp             HHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHTS-HHHHHHHHHT-THHHHHHHHTTC-SC--HHHHHHHHHHHHHHHHHS
T ss_pred             ChHHHHHHHHcCCCC-HHHHHHHHHHHHHHhCC-chhHHHHHHc-CCHHHHHHHHcC-CC--HHHHHHHHHHHHHHhCCC
Confidence            346677777876532 34888999999998866 5678899998 999999999988 43  567799999999999875


Q ss_pred             chHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHH
Q 015939          165 GVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAIL  243 (398)
Q Consensus       165 ~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~  243 (398)
                      +.   .+.. +.+.|+++.|+.+|++++..++..++.+|.+|+.. ++++..+.. .|+++.|+.+|++......+..++
T Consensus       266 ~~---~~~~-v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~-~~~i~~Lv~lL~~~~~~~~~~~a~  340 (780)
T 2z6g_A          266 EG---AKMA-VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTS  340 (780)
T ss_dssp             TT---HHHH-HHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHT-TTHHHHHHHHHTTCCCHHHHHHHH
T ss_pred             hh---hHHH-HHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHH-cCCHHHHHHHHhcCCHHHHHHHHH
Confidence            54   2444 66889999999999999999999999999999975 788888888 799999999999885566778899


Q ss_pred             HHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhH
Q 015939          244 SILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTA  323 (398)
Q Consensus       244 ~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~  323 (398)
                      .+|++|+...+++..+++.|+++.|+.++.+  .+..+++.++++|.+|+.....  ... ..++++.|+.++...++.+
T Consensus       341 ~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~--~~~~~~~~a~~~L~~L~~~~~~--~~~-~~~~i~~Lv~lL~~~d~~v  415 (780)
T 2z6g_A          341 RVLKVLSVCSSNKPAIVEAGGMQALGLHLTD--PSQRLVQNCLWTLRNLSDAATK--QEG-MEGLLGTLVQLLGSDDINV  415 (780)
T ss_dssp             HHHHHHHTSTTHHHHHHHTTHHHHHGGGTTC--SCHHHHHHHHHHHHHHHTTCTT--CSC-CHHHHHHHHHHTTCSCHHH
T ss_pred             HHHHHhhcChHHHHHHHHhchHHHHHHHHcC--CchHHHHHHHHHHHHHhccchh--hhh-hhhHHHHHHHHHcCCCHHH
Confidence            9999999999999999999999999999953  6788999999999999975432  112 3478999999999999999


Q ss_pred             HHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCc-HHHHHHHHHHHHHHhc
Q 015939          324 REDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENE-GIVRKMCGDLVKVLGK  381 (398)
Q Consensus       324 ~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~-~~~k~~A~~lL~~l~~  381 (398)
                      ++.|+.+|.+|+..+  ++.+..+++.|+++.|+.+|....+ +.+++.|..+|..++.
T Consensus       416 r~~A~~aL~~L~~~~--~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~  472 (780)
T 2z6g_A          416 VTCAAGILSNLTCNN--YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS  472 (780)
T ss_dssp             HHHHHHHHHHHTSSC--HHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHHHhCC--HHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence            999999999999853  6788899999999999999976433 4899999999999875

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.89  E-value=8.7e-22  Score=173.86  Aligned_cols=195  Identities=18%  Similarity=0.208  Sum_probs=172.0

Q ss_pred             CcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC
Q 015939          130 GFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD  209 (398)
Q Consensus       130 g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~  209 (398)
                      |..+.|+.+|.+ .+  ..++..|+++|.+++..++.   ++.. +.+.|+++.|+++|++++.+++..|+++|.+|+.+
T Consensus        12 ~~~~~l~~LL~s-~~--~~v~~~a~~~L~~l~~~~~~---~~~~-i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~   84 (210)
T 4db6_A           12 SELPQMVQQLNS-PD--QQELQSALRKLSQIASGGNE---QIQA-VIDAGALPALVQLLSSPNEQILQEALWALSNIASG   84 (210)
T ss_dssp             -CHHHHHHHTTC-SC--HHHHHHHHHHHHHHHTSCHH---HHHH-HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTS
T ss_pred             chhHHHHHHhcC-CC--HHHHHHHHHHHHHHHcCCHH---HHHH-HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcC
Confidence            889999999988 44  56779999999999976554   3455 77889999999999999999999999999999964


Q ss_pred             -chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHH
Q 015939          210 -NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIK  287 (398)
Q Consensus       210 -~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~  287 (398)
                       ++++..+.+ .|+++.|+.+|+++ ++.++..|+++|.+|+... +.+..+++.|+++.|+++|++  +++.+++.|++
T Consensus        85 ~~~~~~~i~~-~g~i~~L~~lL~~~-~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~--~~~~v~~~a~~  160 (210)
T 4db6_A           85 GNEQIQAVID-AGALPALVQLLSSP-NEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSS--PNEQILQEALW  160 (210)
T ss_dssp             CHHHHHHHHH-TTCHHHHHHHTTCS-CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTC--SCHHHHHHHHH
T ss_pred             CcHHHHHHHH-CCCHHHHHHHHcCC-cHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcC--CCHHHHHHHHH
Confidence             678888887 89999999999999 8999999999999999654 566778899999999999954  68899999999


Q ss_pred             HHHHHhCC-HHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhc
Q 015939          288 MLSIVATC-SEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCC  336 (398)
Q Consensus       288 ~L~~La~~-~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~  336 (398)
                      +|.+|+.. ++.+..+. ..|+++.|+.++.++++.+++.|+.+|.+|+.
T Consensus       161 aL~~l~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          161 ALSNIASGGNEQKQAVK-EAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HHHHHHTSCHHHHHHHH-HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHcCCcHHHHHHH-HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            99999986 77888887 56999999999999999999999999999984

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.88  E-value=2.6e-21  Score=203.34  Aligned_cols=270  Identities=13%  Similarity=0.141  Sum_probs=217.9

Q ss_pred             HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc
Q 015939           86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG  165 (398)
Q Consensus        86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~  165 (398)
                      .++.+++.|.+++.+  .+..++..|+..      ++..+. . |+++.|+.+|.+ .  +..+++.|+.+|.+++.+.+
T Consensus       116 ~i~~lv~~L~~~~~~--~r~~a~~~l~~~------~~~~i~-~-g~ip~Lv~lL~~-~--d~~vr~~A~~~L~~L~~~~~  182 (780)
T 2z6g_A          116 AHPTNVQRLAEPSQM--LKHAVVNLINYQ------DDAELA-T-RAIPELTKLLND-E--DQVVVNKAAVMVHQLSKKEA  182 (780)
T ss_dssp             ----------CCSCH--HHHHHHHHHHHH------HHHHHH-H-HHHHHHHHHHHC-S--CHHHHHHHHHHHHHHHTSHH
T ss_pred             cHHHHHHHhcCccHH--HHHHHHHHHHhh------hHHHHH-h-CCHHHHHHHHCC-C--CHHHHHHHHHHHHHHhCCCh
Confidence            467788899887653  556666666533      333454 5 999999999987 4  45677999999999998654


Q ss_pred             hHHHhhHhhhccCCChHHHHHHHhcC-ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHH
Q 015939          166 VKEKLNRLILNTYNCLPLFLEILREG-NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILS  244 (398)
Q Consensus       166 ~~~~~~~~il~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~  244 (398)
                      .    +..++...|+++.|+++|+++ +.+++..|+.+|.+|+.+++++..+.. .|+++.|+.+|+++ ++.++..|++
T Consensus       183 ~----~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~~~~~~i~~-~g~I~~Lv~lL~~~-~~~v~~~A~~  256 (780)
T 2z6g_A          183 S----RHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFK-SGGIPALVNMLGSP-VDSVLFHAIT  256 (780)
T ss_dssp             H----HHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSHHHHHHHHH-TTHHHHHHHHTTCS-CHHHHHHHHH
T ss_pred             h----HHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhHHHHHH-cCCHHHHHHHHcCC-CHHHHHHHHH
Confidence            3    556344568999999999876 899999999999999999888988888 79999999999998 8999999999


Q ss_pred             HHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccCh-
Q 015939          245 ILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGK-  321 (398)
Q Consensus       245 aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~-  321 (398)
                      +|.+|+... +.+..+++.|+++.|+++|.+  .+..+.+.++.+|.+|+. +++++..+. ..|+++.|+.+++.+++ 
T Consensus       257 aL~nLa~~~~~~~~~v~~~g~v~~Lv~lL~~--~~~~v~~~a~~aL~~La~~~~e~~~~i~-~~~~i~~Lv~lL~~~~~~  333 (780)
T 2z6g_A          257 TLHNLLLHQEGAKMAVRLAGGLQKMVALLNK--TNVKFLAITTDCLQILAYGNQESKLIIL-ASGGPQALVNIMRTYTYE  333 (780)
T ss_dssp             HHHHHHHHSTTHHHHHHHTTHHHHHHHGGGC--CCHHHHHHHHHHHHHHHTTCHHHHHHHH-TTTHHHHHHHHHTTCCCH
T ss_pred             HHHHHhCCChhhHHHHHHcCCHHHHHHHHhc--CCHHHHHHHHHHHHHHhcCChHHHHHHH-HcCCHHHHHHHHhcCCHH
Confidence            999999765 566666789999999999964  678899999999999996 689999988 46999999999987554 


Q ss_pred             hHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          322 TAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       322 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      ..++.++.+|++|+..   ...+..+++.|+++.|+.+++.+ +...++.|..+|..+++
T Consensus       334 ~~~~~a~~aL~~Ls~~---~~~~~~i~~~g~l~~Ll~lL~~~-~~~~~~~a~~~L~~L~~  389 (780)
T 2z6g_A          334 KLLWTTSRVLKVLSVC---SSNKPAIVEAGGMQALGLHLTDP-SQRLVQNCLWTLRNLSD  389 (780)
T ss_dssp             HHHHHHHHHHHHHHTS---TTHHHHHHHTTHHHHHGGGTTCS-CHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhhcC---hHHHHHHHHhchHHHHHHHHcCC-chHHHHHHHHHHHHHhc
Confidence            4567899999999974   56788999999999999999876 78899999999999887

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=99.88  E-value=6.1e-23  Score=157.74  Aligned_cols=78  Identities=32%  Similarity=0.402  Sum_probs=71.3

Q ss_pred             cccccccCCCCcccccCccccCCCceecCCC-cccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHHhhC
Q 015939            2 VRQELYIAVPNLFRCPISLDVMKSPVSLCTG-VTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSHQL   80 (398)
Q Consensus         2 ~~~~~~~~~~~~~~Cpi~~~~~~dPv~~~~g-~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~   80 (398)
                      ..+.....+|++|+||||+++|+|||+++|| |+|||.||++||.. ..+||+|++++...+++||..|++.|+.|+.+.
T Consensus        11 ~~~~~~~~~p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~   89 (98)
T 1wgm_A           11 QEEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAER   89 (98)
T ss_dssp             SCCCCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHHS
T ss_pred             cchhhhhcCcHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCChhhceEcHHHHHHHHHHHHHc
Confidence            4455667899999999999999999999999 99999999999985 678999999999999999999999999998654

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=99.87  E-value=8.1e-23  Score=157.65  Aligned_cols=75  Identities=31%  Similarity=0.401  Sum_probs=69.3

Q ss_pred             ccccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHHhhC
Q 015939            5 ELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSHQL   80 (398)
Q Consensus         5 ~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~   80 (398)
                      .....+|++|+||||+++|+|||+++|||+|||.||++||.. ..+||.|++++...+++||..+++.|+.|+.++
T Consensus        21 ~~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~L~pn~~Lk~~I~~~~~~~   95 (100)
T 2kre_A           21 IDYSDAPDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLN-SPTDPFNRQTLTESMLEPVPELKEQIQAWMREK   95 (100)
T ss_dssp             CSCSSCSTTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTS-CSBCSSSCCBCCTTSSEECHHHHHHHHHHHHTT
T ss_pred             hhhccCcHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHc-CCCCCCCCCCCChhhceECHHHHHHHHHHHHHh
Confidence            345689999999999999999999999999999999999984 678999999999999999999999999998654

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=99.87  E-value=8.6e-23  Score=153.02  Aligned_cols=75  Identities=31%  Similarity=0.434  Sum_probs=69.1

Q ss_pred             cccccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHHhh
Q 015939            4 QELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSHQ   79 (398)
Q Consensus         4 ~~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~   79 (398)
                      +.....+|++|.||||+++|+|||+++|||+|||.||++||.. ..+||.|++++...+++||..+++.|+.|+.+
T Consensus         5 e~~~~~~p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~~~~l~pn~~L~~~i~~~~~~   79 (85)
T 2kr4_A            5 EIDYSDAPDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLTESMLEPVPELKEQIQAWMRE   79 (85)
T ss_dssp             CCCCTTCCTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCGGGCEECHHHHHHHHHHHHH
T ss_pred             hhhhhcCchheECcccCchhcCCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCChHhcchHHHHHHHHHHHHHH
Confidence            3455689999999999999999999999999999999999985 67899999999999999999999999999753

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.87  E-value=1.3e-20  Score=174.84  Aligned_cols=223  Identities=14%  Similarity=0.120  Sum_probs=179.4

Q ss_pred             HHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHH-HHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHH
Q 015939          148 AVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLE-ILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSA  225 (398)
Q Consensus       148 ~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~  225 (398)
                      +....|+..|..++.+.+.    ... +.+.|+++.|+. +|+++++++|..|+++|.+++.+ +..+..+.+ .|++++
T Consensus        55 e~k~~Al~~L~~lv~~~dn----a~~-~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~-~g~l~~  128 (296)
T 1xqr_A           55 QEREGALELLADLCENMDN----AAD-FCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLG-LGALRK  128 (296)
T ss_dssp             HHHHHHHHHHHHHHTSHHH----HHH-HHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHH
T ss_pred             HHHHHHHHHHHHHHhChhh----HHH-HHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHH-CCCHHH
Confidence            4457888888888875543    444 678899999999 99999999999999999999987 668888887 899999


Q ss_pred             HHHHhccccCHHHHHHHHHHHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHh
Q 015939          226 LFDYLKLAEDQALNDAILSILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALS  303 (398)
Q Consensus       226 Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~  303 (398)
                      |+.+|++..++.+++.|+++|.+|+.+. +....+++.|+++.|+.+|+  +++..++..|+++|.+|+. +++.++.++
T Consensus       129 Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~--~~d~~v~~~A~~aLs~L~~~~~~~~~~vv  206 (296)
T 1xqr_A          129 LLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ--QQVQKLKVKSAFLLQNLLVGHPEHKGTLC  206 (296)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH--SSCHHHHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             HHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHc--CCCHHHHHHHHHHHHHHHhCChHHHHHHH
Confidence            9999997547889999999999999765 46677889999999999995  4789999999999999987 567788888


Q ss_pred             hccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhc-CCHH----HHHHHHhhcC-cHHHHHHHHHHHH
Q 015939          304 EEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNS-NGLT----KLLLVMQSEN-EGIVRKMCGDLVK  377 (398)
Q Consensus       304 ~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~-g~~~----~Ll~~l~~~~-~~~~k~~A~~lL~  377 (398)
                       +.|+++.|+.+|...+..+++.|+.+|.+|+...  +..+...... ..+.    .-+..++... .....++|..++.
T Consensus       207 -~~g~i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~--~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~~~e~~~~~~~il~  283 (296)
T 1xqr_A          207 -SMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF--PQGVRECREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQ  283 (296)
T ss_dssp             -HTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC--HHHHHHHHCGGGCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHH
T ss_pred             -HcCCHHHHHHHHcCCChhHHHHHHHHHHHHHhCC--hhHHHHHhccHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence             5799999999999999999999999999999752  3333332221 1122    2234445332 4677788888888


Q ss_pred             HHhc
Q 015939          378 VLGK  381 (398)
Q Consensus       378 ~l~~  381 (398)
                      .+..
T Consensus       284 ~~f~  287 (296)
T 1xqr_A          284 TCFS  287 (296)
T ss_dssp             HHCC
T ss_pred             HHcC
Confidence            8775

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.86  E-value=2.3e-20  Score=190.05  Aligned_cols=329  Identities=11%  Similarity=0.103  Sum_probs=244.2

Q ss_pred             CCCcccchhHHHHH----HhcCCCCCCcccccCCCCCCcccHHHHHHHHHHHhhCCCC---HHHHHHHHHHHHcCCCCch
Q 015939           30 CTGVTYDRSSIQHW----LESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSHQLTVP---EQEVRVWIEKIKSENESEN  102 (398)
Q Consensus        30 ~~g~~~~r~~i~~~----~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~p~p---~~~i~~l~~~l~~~~~~~~  102 (398)
                      .|.+.=||.+|.+.    +.+..          +. +-..++++--+++-|....+.-   ..-...+.+.|.++..+  
T Consensus       283 ACi~~~cR~~I~~~~~~~L~~~l----------~~-~~ir~lAavvL~KL~~~~~~~~~si~~La~~~~~~L~~~~~~--  349 (778)
T 3opb_A          283 ACIDETMRTYITENYLQLLERSL----------NV-EDVQIYSALVLVKTWSFTKLTCINLKQLSEIFINAISRRIVP--  349 (778)
T ss_dssp             HCCSHHHHHHHHHHHHHHHHHHT----------TS-GGGHHHHHHHHHHHTGGGTCTTCCHHHHHHHHHHHTTTCCHH--
T ss_pred             HhCCcHHHHHHHHhHHHHHHHHh----------cc-HHHHHHHHHHHHHHhcCCCCCcCcHHHHHHHHHHHHhcCCcc--
Confidence            47777788777663    32211          11 2356677777778786432211   23344455555554433  


Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchH---------------
Q 015939          103 SCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVK---------------  167 (398)
Q Consensus       103 ~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~---------------  167 (398)
                      .+..|++.|..++.+ +..|+.+++..|+++.|+.+++...+.  .+...++.+|.|++...+..               
T Consensus       350 ~~~~AvEgLaYLSl~-~~VKe~L~~d~~~L~~Lv~llk~~~d~--s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~  426 (778)
T 3opb_A          350 KVEMSVEALAYLSLK-ASVKIMIRSNESFTEILLTMIKSQKMT--HCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXX  426 (778)
T ss_dssp             HHHHHHHHHHHHTTS-SHHHHHHHHCHHHHHHHHHHHTTTCCT--THHHHHHHHHHHTTCCCCCCCCCCC----------
T ss_pred             HHHHHHHHHHHHhCC-HHHHHHHHhCHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhcc
Confidence            588899999999865 778888888768899999999852333  35688999999999754420               


Q ss_pred             --------------------HHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHH
Q 015939          168 --------------------EKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALF  227 (398)
Q Consensus       168 --------------------~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv  227 (398)
                                          +.+++. +.+.|++|.|+.+++++++.+|+.|+++|.+|+.++++|..+++ .|++++|+
T Consensus       427 ~~~p~~~~~d~~~~~~~~v~~~~~~~-l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~R~~lvq-qGal~~LL  504 (778)
T 3opb_A          427 XXXPAADKVGAEKAAKEDILLFNEKY-ILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQ-QGAVKIIL  504 (778)
T ss_dssp             --------CCTHHHHHHHHHHHHHHH-TTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGGHHHHHH-TTHHHHHH
T ss_pred             ccCcccCcccccccchHHHHHHHHHH-HHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH-CCCHHHHH
Confidence                                013444 77999999999999999999999999999999999999999998 89999999


Q ss_pred             HHhccccCH--HHHHHHHHHHHHhcCCcchHHHHH--H-cCChHHHHHHhcccCcch------------hhHHHHHHHHH
Q 015939          228 DYLKLAEDQ--ALNDAILSILITLSVYRSVKAQLV--E-LGMVQILTRILSDSRTQI------------LTVEKSIKMLS  290 (398)
Q Consensus       228 ~lL~~~~~~--~~~~~a~~aL~~Ls~~~~~~~~~v--~-~g~v~~Lv~lL~~~~~~~------------~~~~~al~~L~  290 (398)
                      .+|.++...  ..+..|+.+|.+|....+....+-  + .|+|++|+++|.......            .-+..|+.+|.
T Consensus       505 ~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALT  584 (778)
T 3opb_A          505 EYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALT  584 (778)
T ss_dssp             HHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHH
T ss_pred             HHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHH
Confidence            999988322  278999999999986555444331  1 499999999996211111            12679999999


Q ss_pred             HHhCCH-----HHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHH-HHHHh------cCCHHHHHH
Q 015939          291 IVATCS-----EGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVK-EAVVN------SNGLTKLLL  358 (398)
Q Consensus       291 ~La~~~-----~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~-~~~~~------~g~~~~Ll~  358 (398)
                      ||+..+     +.|+.|+.+.|+++.|+.+|.+.+..+++.|+.++.||+.+   ++.+ ..+..      .+.++.|+.
T Consensus       585 NLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~---~e~i~~k~~~~~~~~~~~rL~lLV~  661 (778)
T 3opb_A          585 NLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSH---PLTIAAKFFNLENPQSLRNFNILVK  661 (778)
T ss_dssp             HHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTS---GGGTGGGTSCCSSHHHHHHHHHHHH
T ss_pred             HHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCC---cHHHHHHHHhhcCchhhccHHHHHH
Confidence            999965     45788884349999999999999999999999999999974   3332 23332      224788999


Q ss_pred             HHhhcCcHHHHHHHHHHHHHHh
Q 015939          359 VMQSENEGIVRKMCGDLVKVLG  380 (398)
Q Consensus       359 ~l~~~~~~~~k~~A~~lL~~l~  380 (398)
                      +++++ +...|+.|+++|.++.
T Consensus       662 Ll~s~-D~~~r~AAagALAnLt  682 (778)
T 3opb_A          662 LLQLS-DVESQRAVAAIFANIA  682 (778)
T ss_dssp             GGGCS-CHHHHHHHHHHHHHHH
T ss_pred             HHcCC-CHHHHHHHHHHHHHhc
Confidence            99876 8999999999999985

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.85  E-value=4.6e-20  Score=187.78  Aligned_cols=250  Identities=10%  Similarity=0.085  Sum_probs=202.7

Q ss_pred             hhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChh---hHH
Q 015939          121 NRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLD---SKI  197 (398)
Q Consensus       121 ~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~---~~~  197 (398)
                      ++..+.++ |+++.|+.++++ .+  ..+++.|+++|.+++.+.+    +|.. ++..|+++.|+.+|.+++..   .+.
T Consensus       449 ~~~~l~ea-GvIp~Lv~Ll~S-~s--~~~re~A~~aL~nLS~d~~----~R~~-lvqqGal~~LL~lL~s~~~~~~~~k~  519 (778)
T 3opb_A          449 NEKYILRT-ELISFLKREMHN-LS--PNCKQQVVRIIYNITRSKN----FIPQ-LAQQGAVKIILEYLANKQDIGEPIRI  519 (778)
T ss_dssp             HHHHTTTT-THHHHHHHHGGG-SC--HHHHHHHHHHHHHHHTSGG----GHHH-HHHTTHHHHHHHHTTCC---CCHHHH
T ss_pred             HHHHHHHC-cCHHHHHHHHcC-CC--HHHHHHHHHHHHHHcCCHH----HHHH-HHHCCCHHHHHHHHhcCCCcchHHHH
Confidence            67788999 999999999988 43  4566999999999997654    3777 77899999999999988654   799


Q ss_pred             HHHHHHHHhhcCchhHHHhhc--hhhHHHHHHHHhccccCH-------------HHHHHHHHHHHHhcCCcc-----hHH
Q 015939          198 GSIKILDSISLDNESKRRVLE--TENLLSALFDYLKLAEDQ-------------ALNDAILSILITLSVYRS-----VKA  257 (398)
Q Consensus       198 ~a~~~L~~L~~~~~~~~~i~~--~~g~i~~Lv~lL~~~~~~-------------~~~~~a~~aL~~Ls~~~~-----~~~  257 (398)
                      .|+.+|.+|+...+....+..  ..|++++|+.+|....+.             -.+..|+.||.||+..++     .+.
T Consensus       520 ~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r~  599 (778)
T 3opb_A          520 LGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCK  599 (778)
T ss_dssp             HHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHHH
Confidence            999999999876555555532  248999999999831111             126799999999998763     478


Q ss_pred             HHHHc-CChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHH-HHHhhcc-----CcHHHHHHHHhccChhHHHHHHHH
Q 015939          258 QLVEL-GMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGR-LALSEEA-----SCAGRVVERVMKVGKTAREDAVVV  330 (398)
Q Consensus       258 ~~v~~-g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~-~~i~~~~-----g~v~~Lv~~l~~~~~~~~~~a~~~  330 (398)
                      .+++. |+++.|..+|.  +++..+++.|+.++.||+.+++++ +.+....     +.++.||.++..++..+++.|+++
T Consensus       600 ~Ii~~~ga~~~L~~LL~--s~n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAagA  677 (778)
T 3opb_A          600 HIVSTKVYWSTIENLML--DENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAAI  677 (778)
T ss_dssp             HHHHSHHHHHHHHHGGG--CSSHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHh--CCCHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHHH
Confidence            88985 99999999995  468899999999999999999886 4554221     248899999999999999999999


Q ss_pred             HHHhhccCCChhHHHHHHhc-CCHHHHHHHHhhc-CcHHHHHHHHHHHHHHhcCC
Q 015939          331 IWSMCCVYKDARVKEAVVNS-NGLTKLLLVMQSE-NEGIVRKMCGDLVKVLGKAS  383 (398)
Q Consensus       331 L~~l~~~~~~~~~~~~~~~~-g~~~~Ll~~l~~~-~~~~~k~~A~~lL~~l~~~~  383 (398)
                      |.+++...  +.....+++. ++++.++.+++.. .++.++.++..++.+|.++.
T Consensus       678 LAnLts~~--~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~  730 (778)
T 3opb_A          678 FANIATTI--PLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVI  730 (778)
T ss_dssp             HHHHHHHC--HHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHhcCCC--hHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhh
Confidence            99997532  6777888886 8999999999882 48999999999999999853

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.84  E-value=1.7e-19  Score=167.45  Aligned_cols=183  Identities=12%  Similarity=0.142  Sum_probs=163.8

Q ss_pred             ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHH-HhccccCHHHHHHHHHHHHHhcCCc-chHHHHHHcCChHHHH
Q 015939          192 NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFD-YLKLAEDQALNDAILSILITLSVYR-SVKAQLVELGMVQILT  269 (398)
Q Consensus       192 ~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~-lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~~v~~g~v~~Lv  269 (398)
                      +.+.+..|+..|.++..+.+++..+.. .|++++|+. +|+++ +++++..|+++|.+++.+. ..+..+++.|+++.|+
T Consensus        53 ~~e~k~~Al~~L~~lv~~~dna~~~~~-~G~l~~Lv~~lL~s~-~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll  130 (296)
T 1xqr_A           53 DQQEREGALELLADLCENMDNAADFCQ-LSGMHLLVGRYLEAG-AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL  130 (296)
T ss_dssp             HHHHHHHHHHHHHHHHTSHHHHHHHHH-TTHHHHHHHTTTTCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhChhhHHHHHH-cCCHHHHHHHHHcCC-CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHH
Confidence            456788999999999999888888877 899999999 99998 8999999999999999865 4777788999999999


Q ss_pred             HHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHH
Q 015939          270 RILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVV  348 (398)
Q Consensus       270 ~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  348 (398)
                      .+|++ +.+..+++.|+++|.+|+. ++...+.+. ..|+++.|+.+|.+++..++..|+++|.+++..+  ++.+..++
T Consensus       131 ~LL~~-~~~~~v~~~A~~ALsnl~~~~~~~~~~~~-~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~--~~~~~~vv  206 (296)
T 1xqr_A          131 RLLDR-DACDTVRVKALFAISCLVREQEAGLLQFL-RLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH--PEHKGTLC  206 (296)
T ss_dssp             HHHHH-CSCHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHH
T ss_pred             HHHcc-CCCHHHHHHHHHHHHHHHcCCcHHHHHHH-HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC--hHHHHHHH
Confidence            99963 3478899999999999987 567777887 4799999999999999999999999999999863  68899999


Q ss_pred             hcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          349 NSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       349 ~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      +.|+++.|+.+|.+. +..+++.|..+|..+..
T Consensus       207 ~~g~i~~Lv~LL~~~-d~~v~~~al~aL~~l~~  238 (296)
T 1xqr_A          207 SMGMVQQLVALVRTE-HSPFHEHVLGALCSLVT  238 (296)
T ss_dssp             HTTHHHHHHHHHTSC-CSTHHHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHcCC-ChhHHHHHHHHHHHHHh
Confidence            999999999999887 78999999999988877

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=99.83  E-value=2.7e-21  Score=163.52  Aligned_cols=77  Identities=25%  Similarity=0.442  Sum_probs=70.1

Q ss_pred             ccccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHHhhCC
Q 015939            5 ELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSHQLT   81 (398)
Q Consensus         5 ~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~p   81 (398)
                      .....+|++|+||||+++|+|||+++|||||||.||++||..+..+||.|++++...+++||..++.+|..|+..++
T Consensus        98 ~~~~~ip~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~L~pN~~Lk~~Ie~~~~~~~  174 (179)
T 2f42_A           98 RKKREIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQLIPNLAMKEVIDAFIQENG  174 (179)
T ss_dssp             GGCCCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECHHHHHHHHHHHHHCT
T ss_pred             ccccCCcHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhhCcchHHHHHHHHHHHHHCC
Confidence            34578999999999999999999999999999999999997644589999999999999999999999999987553

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.82  E-value=1.1e-20  Score=139.76  Aligned_cols=74  Identities=49%  Similarity=0.910  Sum_probs=69.2

Q ss_pred             ccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHHhhC
Q 015939            7 YIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSHQL   80 (398)
Q Consensus         7 ~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~   80 (398)
                      ..+++++|.||||.++|.|||+++|||+||+.||.+|+..+..+||.|++++...++.||..++++|+.|.+++
T Consensus         2 ~~~~~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~~l~~n~~l~~~i~~~~~~~   75 (78)
T 1t1h_A            2 SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESN   75 (78)
T ss_dssp             CCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHS
T ss_pred             CcCCcccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChhhCccCHHHHHHHHHHHHHc
Confidence            45789999999999999999999999999999999999877889999999999999999999999999998754

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.79  E-value=6.6e-20  Score=140.16  Aligned_cols=71  Identities=27%  Similarity=0.510  Sum_probs=62.3

Q ss_pred             CCCCcccccCccccCCCceecC-CCcccchhHHHHHHhcC-----CCCCCc--cccc-CCCCCCcccHHHHHHHHHHHhh
Q 015939            9 AVPNLFRCPISLDVMKSPVSLC-TGVTYDRSSIQHWLESG-----HDTCPA--TMQI-LSTKEFVPNLTLHRLIAHWSHQ   79 (398)
Q Consensus         9 ~~~~~~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~~-----~~~CP~--~~~~-l~~~~l~~n~~l~~~i~~~~~~   79 (398)
                      ..+++|.||||+++|+|||+++ |||+|||.||++||..+     ..+||+  |++. +...+++||..|++.|..|..+
T Consensus         3 ~~~~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~~L~pn~~L~~~I~~~~~~   82 (94)
T 2yu4_A            3 SGSSGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKSDLIQDEALRRAIENHNKK   82 (94)
T ss_dssp             SCSSCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGGGEEECHHHHHHHHHHHTT
T ss_pred             CCCcEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHhhCcCCHHHHHHHHHHHHH
Confidence            3578999999999999999996 99999999999999642     468999  5544 8888999999999999999854

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.77  E-value=2.7e-19  Score=165.51  Aligned_cols=77  Identities=25%  Similarity=0.443  Sum_probs=70.3

Q ss_pred             ccccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHHhhCC
Q 015939            5 ELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSHQLT   81 (398)
Q Consensus         5 ~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~p   81 (398)
                      .....+|++|+||||.++|+|||+++|||||||.||++|+..+..+||.|+++++..+++||..+++.|+.|+..++
T Consensus       200 ~~~~~~~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~~n~~l~~~i~~~~~~~~  276 (281)
T 2c2l_A          200 RKKRDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENG  276 (281)
T ss_dssp             TSCCCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCS
T ss_pred             ccCCCCCcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchhcCcccHHHHHHHHHHHHHCC
Confidence            34568899999999999999999999999999999999998766679999999999999999999999999997653

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.76  E-value=9.9e-17  Score=159.45  Aligned_cols=289  Identities=13%  Similarity=0.171  Sum_probs=225.2

Q ss_pred             HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939           84 EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE  163 (398)
Q Consensus        84 ~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~  163 (398)
                      .+.|+.|..++++... .++++.|+..|+.++++   +|..++.  ++++.|+..|+. ...+.+....++.+|.++...
T Consensus        20 ~etI~~L~~Rl~~~tl-~eDRR~Av~~Lk~~sk~---y~~~Vg~--~~l~~li~~L~~-d~~D~e~v~~~LetL~~l~~~   92 (651)
T 3grl_A           20 AETIQKLCDRVASSTL-LDDRRNAVRALKSLSKK---YRLEVGI--QAMEHLIHVLQT-DRSDSEIIGYALDTLYNIISN   92 (651)
T ss_dssp             HHHHHHHHHHHHHCCS-HHHHHHHHHHHHHTTTT---TTTHHHH--HTHHHHHHHHHS-CTTCHHHHHHHHHHHHHHHCC
T ss_pred             hhHHHHHHHHHhhccc-hhHHHHHHHHHHHHHHH---hHHHhhh--hhHHHHHHHHhc-ccccHHHHHHHHHHHHHHhCC
Confidence            6789999999988766 57999999999999865   7777775  789999999988 556778889999999887654


Q ss_pred             cchHH--------------HhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-c-hhHHHhhchhhHHHHHH
Q 015939          164 NGVKE--------------KLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-N-ESKRRVLETENLLSALF  227 (398)
Q Consensus       164 ~~~~~--------------~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~-~~~~~i~~~~g~i~~Lv  227 (398)
                      +++.+              .+...++.+.+.|+.|+++|++.+..+|.+++.+|..|+.+ + .....|...+++++.|+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv  172 (651)
T 3grl_A           93 DEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLM  172 (651)
T ss_dssp             C--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHH
T ss_pred             CCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHH
Confidence            43211              12224355789999999999999999999999999999877 3 37888886689999999


Q ss_pred             HHhccccCHHHHHHHHHHHHHhcCCcchHHHHH-HcCChHHHHHHhccc--CcchhhHHHHHHHHHHHhC-CHHHHHHHh
Q 015939          228 DYLKLAEDQALNDAILSILITLSVYRSVKAQLV-ELGMVQILTRILSDS--RTQILTVEKSIKMLSIVAT-CSEGRLALS  303 (398)
Q Consensus       228 ~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v-~~g~v~~Lv~lL~~~--~~~~~~~~~al~~L~~La~-~~~~~~~i~  303 (398)
                      .+|++. ...++..++.+|.+|+.+..+.++++ -+|+++.|+.++...  .....+++.|+.+|.+|.. ++.++..+.
T Consensus       173 ~lL~d~-rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~Fr  251 (651)
T 3grl_A          173 DLLADS-REVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFK  251 (651)
T ss_dssp             GGGGCS-SHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHhCc-hHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHH
Confidence            999998 67799999999999999888777777 579999999999631  1234788999999999998 566888888


Q ss_pred             hccCcHHHHHHHHhccChh------HHHH---HHHHHHHhhccCC----ChhHHHHHHhcCCHHHHHHHHhhc-CcHHHH
Q 015939          304 EEASCAGRVVERVMKVGKT------ARED---AVVVIWSMCCVYK----DARVKEAVVNSNGLTKLLLVMQSE-NEGIVR  369 (398)
Q Consensus       304 ~~~g~v~~Lv~~l~~~~~~------~~~~---a~~~L~~l~~~~~----~~~~~~~~~~~g~~~~Ll~~l~~~-~~~~~k  369 (398)
                      + .|+++.|..++..+.+.      ...+   ++.++..+...++    +..+...+.+.|+++.|+.++-+. ....+|
T Consensus       252 E-t~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~  330 (651)
T 3grl_A          252 E-GSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADIL  330 (651)
T ss_dssp             H-TTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHH
T ss_pred             H-cCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHH
Confidence            5 59999999988743221      2233   5556656665432    245778889999999999998654 345677


Q ss_pred             HHHHHHHHHHhc
Q 015939          370 KMCGDLVKVLGK  381 (398)
Q Consensus       370 ~~A~~lL~~l~~  381 (398)
                      ..|...+..+.+
T Consensus       331 ~~Al~tla~~ir  342 (651)
T 3grl_A          331 TETINTVSEVIR  342 (651)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            777666655544

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=99.70  E-value=2e-17  Score=126.23  Aligned_cols=74  Identities=23%  Similarity=0.357  Sum_probs=66.5

Q ss_pred             ccccCCCCcccccCccccCCCceecC-CCcccchhHHHHHHhc-CCCCCCcccccC-CCCCCcccHHHHHHHHHHHh
Q 015939            5 ELYIAVPNLFRCPISLDVMKSPVSLC-TGVTYDRSSIQHWLES-GHDTCPATMQIL-STKEFVPNLTLHRLIAHWSH   78 (398)
Q Consensus         5 ~~~~~~~~~~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~-~~~~CP~~~~~l-~~~~l~~n~~l~~~i~~~~~   78 (398)
                      +....++++|.||||.++|.|||+++ |||+||+.||.+|+.. +...||.|++.+ ...++.+|..++.+++.|..
T Consensus         5 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~~   81 (92)
T 3ztg_A            5 SEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALIANKFLRQAVNNFKN   81 (92)
T ss_dssp             SSCCCCCTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSCCTTSCEECHHHHHHHHHHHH
T ss_pred             cccccCCcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCCCccccCcCHHHHHHHHHHHH
Confidence            45668899999999999999999999 9999999999999964 457899999998 56689999999999999975

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=99.66  E-value=1.6e-17  Score=115.44  Aligned_cols=54  Identities=24%  Similarity=0.369  Sum_probs=49.1

Q ss_pred             cccccCccccCCCceec-CCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccH
Q 015939           13 LFRCPISLDVMKSPVSL-CTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNL   67 (398)
Q Consensus        13 ~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~   67 (398)
                      .|.||||+++|+|||++ +|||+|||.+|++|+.. +.+||+|+++|...+++||+
T Consensus         3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~~~~Lip~~   57 (61)
T 2bay_A            3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEIV   57 (61)
T ss_dssp             -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEECC
T ss_pred             eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCChhhcEECc
Confidence            58999999999999999 89999999999999975 34699999999999999875

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=99.63  E-value=1.2e-16  Score=128.81  Aligned_cols=70  Identities=14%  Similarity=0.227  Sum_probs=63.5

Q ss_pred             CCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCC-CCCcccHHHHHHHHHHHh
Q 015939            9 AVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILST-KEFVPNLTLHRLIAHWSH   78 (398)
Q Consensus         9 ~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~-~~l~~n~~l~~~i~~~~~   78 (398)
                      .+++++.||||.++|.+||+++|||+||+.||.+|+..+...||.|+.++.. .++.+|..++.+++.|.-
T Consensus        48 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~~~p  118 (124)
T 3fl2_A           48 KVEETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQLFP  118 (124)
T ss_dssp             HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHHHST
T ss_pred             hCccCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHHHcc
Confidence            4567889999999999999999999999999999998656789999999987 688999999999998863

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=99.63  E-value=1.1e-16  Score=141.52  Aligned_cols=70  Identities=21%  Similarity=0.381  Sum_probs=63.2

Q ss_pred             CCCCcccccCccccCCCceec-CCCcccchhHHHHHHhc-CCCCCCc--ccccCCCCCCcccHHHHHHHHHHHh
Q 015939            9 AVPNLFRCPISLDVMKSPVSL-CTGVTYDRSSIQHWLES-GHDTCPA--TMQILSTKEFVPNLTLHRLIAHWSH   78 (398)
Q Consensus         9 ~~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~-~~~~CP~--~~~~l~~~~l~~n~~l~~~i~~~~~   78 (398)
                      ....+|+||||+++|+|||++ .|||+|||.||.+||.. +...||+  |++.+...++.||..|+++++.|..
T Consensus       177 ~~~~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~dL~pN~~L~~lve~~k~  250 (267)
T 3htk_C          177 GGKIELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRDFVRDPIMELRCKIAKM  250 (267)
T ss_dssp             SSBCCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGGEEECHHHHHHHHHHHH
T ss_pred             CCceeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhhCCcCHHHHHHHHHHHH
Confidence            456789999999999999996 89999999999999975 3457999  9999999999999999999999964

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=99.60  E-value=4.2e-16  Score=129.46  Aligned_cols=69  Identities=19%  Similarity=0.289  Sum_probs=63.5

Q ss_pred             CCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCC-CCcccHHHHHHHHHHH
Q 015939            9 AVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTK-EFVPNLTLHRLIAHWS   77 (398)
Q Consensus         9 ~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~-~l~~n~~l~~~i~~~~   77 (398)
                      .+++++.||||.++|.|||+++|||+||+.||.+|+..+...||.|+.++... .+.+|..++.+++.|.
T Consensus        74 ~l~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~~  143 (150)
T 1z6u_A           74 KLEQSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLFF  143 (150)
T ss_dssp             HHHHHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHHS
T ss_pred             hCccCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHHh
Confidence            45678899999999999999999999999999999987667899999999987 8899999999999886

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=99.58  E-value=3.6e-16  Score=124.34  Aligned_cols=77  Identities=21%  Similarity=0.299  Sum_probs=67.3

Q ss_pred             CcccccccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCC-------CCCcccHHHHHHH
Q 015939            1 MVRQELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILST-------KEFVPNLTLHRLI   73 (398)
Q Consensus         1 ~~~~~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~-------~~l~~n~~l~~~i   73 (398)
                      |+.........++|.||||.++|.+||+++|||+||+.||.+|+..+...||.|+..+..       .+..+|..+...+
T Consensus         3 m~~~~~~~~~~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~n~~l~~~i   82 (115)
T 3l11_A            3 MALPKDAIPSLSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWTRYHTRRNSLVNVELWTII   82 (115)
T ss_dssp             CCCCTTCCCCHHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHHHHHHHHHTTCCBCHHHHHHH
T ss_pred             CcccccccCCCCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCccccccccccchhhHHHHHHH
Confidence            566666677778999999999999999999999999999999998767889999999874       5667889899888


Q ss_pred             HHHH
Q 015939           74 AHWS   77 (398)
Q Consensus        74 ~~~~   77 (398)
                      +.|.
T Consensus        83 ~~~~   86 (115)
T 3l11_A           83 QKHY   86 (115)
T ss_dssp             HHHS
T ss_pred             HHHC
Confidence            8884

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.57  E-value=9.1e-16  Score=118.59  Aligned_cols=69  Identities=17%  Similarity=0.394  Sum_probs=62.9

Q ss_pred             CCCCcccccCccccCCCceec-CCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHHh
Q 015939            9 AVPNLFRCPISLDVMKSPVSL-CTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSH   78 (398)
Q Consensus         9 ~~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~   78 (398)
                      .+++++.||||.+.|.+||++ +|||+||+.||.+|+.. ...||.|+..+...++.+|..+.++++.|.+
T Consensus        18 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~n~~l~~~i~~~~~   87 (99)
T 2y43_A           18 TIDDLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSY-KTQCPTCCVTVTEPDLKNNRILDELVKSLNF   87 (99)
T ss_dssp             HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred             hCCCCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHC-CCCCCCCCCcCChhhCCcCHHHHHHHHHHHH
Confidence            455678999999999999998 89999999999999985 5789999999998889999999999999975

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=99.56  E-value=1.3e-15  Score=156.80  Aligned_cols=72  Identities=32%  Similarity=0.422  Sum_probs=67.9

Q ss_pred             cccCCCCcccccCccccCCCceecCCC-cccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHHh
Q 015939            6 LYIAVPNLFRCPISLDVMKSPVSLCTG-VTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSH   78 (398)
Q Consensus         6 ~~~~~~~~~~Cpi~~~~~~dPv~~~~g-~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~   78 (398)
                      ...++|++|+|||+.++|+|||++++| +||+|++|++|+.. ..+||.|+++|...+++||+++|..|+.|+.
T Consensus       884 ~~~~iP~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~-~~tdP~Tr~~L~~~~liPN~~Lk~~I~~w~~  956 (968)
T 3m62_A          884 EYGDVPDEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLS-DSTDPFNRMPLKLEDVTPNEELRQKILCFKK  956 (968)
T ss_dssp             HHCCSCGGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTT-CCBCTTTCCBCCGGGCEECHHHHHHHHHHHH
T ss_pred             cccCCcHHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhc-CCCCCCCCCCCCcccccccHHHHHHHHHHHH
Confidence            468999999999999999999999998 69999999999976 6789999999999999999999999999985

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.56  E-value=1.5e-16  Score=117.61  Aligned_cols=67  Identities=24%  Similarity=0.333  Sum_probs=58.1

Q ss_pred             ccccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcC------CCCCCcccccCCCCCCcccHHHHH
Q 015939            5 ELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESG------HDTCPATMQILSTKEFVPNLTLHR   71 (398)
Q Consensus         5 ~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~------~~~CP~~~~~l~~~~l~~n~~l~~   71 (398)
                      +....+++++.||||.+.|.+|++++|||+||+.||.+|+...      ...||.|+..+...++.+|..+++
T Consensus         4 ~~~~~~~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~   76 (79)
T 2egp_A            4 GSSGNVQEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFEHLQANQHLAN   76 (79)
T ss_dssp             SSSCCCCCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSSGGGTCSSSCC
T ss_pred             chHhhcccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHhhCCcCHHHHH
Confidence            3456788999999999999999999999999999999999752      568999999999888888876543

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=5.8e-15  Score=104.97  Aligned_cols=58  Identities=19%  Similarity=0.301  Sum_probs=51.4

Q ss_pred             cccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCC
Q 015939            6 LYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEF   63 (398)
Q Consensus         6 ~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l   63 (398)
                      ....+++++.||||.+.+++||+++|||+||+.||.+|+..+...||.|+.++...++
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~i   65 (66)
T 2ecy_A            8 FVKTVEDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKDKV   65 (66)
T ss_dssp             SCCSCCCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTTTC
T ss_pred             hhhcCCcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChhhc
Confidence            3456788999999999999999999999999999999997567789999999877654

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=6e-15  Score=107.20  Aligned_cols=63  Identities=22%  Similarity=0.424  Sum_probs=54.1

Q ss_pred             CcccccccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhc--CCCCCCcccccCCCCCC
Q 015939            1 MVRQELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLES--GHDTCPATMQILSTKEF   63 (398)
Q Consensus         1 ~~~~~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~--~~~~CP~~~~~l~~~~l   63 (398)
                      |+.+.....+++++.||||.+.|.+||+++|||+||+.||.+|+..  +...||.|++++...++
T Consensus         8 ~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~   72 (73)
T 2ysl_A            8 MASGQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKNAI   72 (73)
T ss_dssp             CCCCCCCCCCCCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCCCC
T ss_pred             cccHHHHHhCccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcccC
Confidence            4455566778899999999999999999999999999999999963  45689999999876654

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.53  E-value=2.7e-15  Score=117.83  Aligned_cols=71  Identities=11%  Similarity=0.208  Sum_probs=63.0

Q ss_pred             ccCCCCcccccCccccCCCceec-CCCcccchhHHHHHHhcCCCCCCcccccCCCC----CCcccHHHHHHHHHHHh
Q 015939            7 YIAVPNLFRCPISLDVMKSPVSL-CTGVTYDRSSIQHWLESGHDTCPATMQILSTK----EFVPNLTLHRLIAHWSH   78 (398)
Q Consensus         7 ~~~~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~----~l~~n~~l~~~i~~~~~   78 (398)
                      ...+++++.||||.++|.|||++ +|||+||+.||.+|+.. ...||.|+..+...    .+.+|..+..++..|..
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~l~~n~~l~~~i~~~~~   84 (108)
T 2ckl_A            9 ITELNPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHKTRPLLNIRSDKTLQDIVYKLVP   84 (108)
T ss_dssp             HHHHGGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCSSCGGGGEEECHHHHHHHHHHST
T ss_pred             hhccCCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccccCcccccCcCHHHHHHHHHHhh
Confidence            34677899999999999999998 99999999999999986 47899999999876    67899999999988853

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.53  E-value=3.1e-12  Score=127.38  Aligned_cols=289  Identities=11%  Similarity=0.123  Sum_probs=212.0

Q ss_pred             HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhh-----------------hhhhhhhcCCcHHHHHHHhhhccCCcH
Q 015939           85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEA-----------------NRRFLASYGGFVEAVFGVLNRKRRSEI  147 (398)
Q Consensus        85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~-----------------~r~~i~~~~g~v~~L~~lL~~~~~~~~  147 (398)
                      ..++.++..|+.+..+.+....++..|..+...++.                 +.+.+.+.++.++.|+.+|++ .+  -
T Consensus        60 ~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~-~d--f  136 (651)
T 3grl_A           60 QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEE-FD--F  136 (651)
T ss_dssp             HTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTC-CC--H
T ss_pred             hhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcC-cc--H
Confidence            346778888888766556677788888665443221                 223444445899999999987 44  4


Q ss_pred             HHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHH
Q 015939          148 AVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALF  227 (398)
Q Consensus       148 ~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv  227 (398)
                      .++-.++..|..++.+.+.  ++++.|+..+++|+.|+++|++....+|..++.+|..|+.++..-..++...|+++.|+
T Consensus       137 ~vR~~alqlL~~L~~~r~~--~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf  214 (651)
T 3grl_A          137 HVRWPGVKLLTSLLKQLGP--QVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLL  214 (651)
T ss_dssp             HHHHHHHHHHHHHHHHSHH--HHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCcH--HHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHH
Confidence            5668999999999976554  35677677889999999999999999999999999999999655555555489999999


Q ss_pred             HHhccc---cCHHHHHHHHHHHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcc----hhhHHH---HHHHHHHHhCC-
Q 015939          228 DYLKLA---EDQALNDAILSILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQ----ILTVEK---SIKMLSIVATC-  295 (398)
Q Consensus       228 ~lL~~~---~~~~~~~~a~~aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~----~~~~~~---al~~L~~La~~-  295 (398)
                      ++++..   ....+...++.+|.+|..+. .|+..+.+.|+++.|..++......    +....+   ++.+++.|... 
T Consensus       215 ~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~  294 (651)
T 3grl_A          215 DIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPN  294 (651)
T ss_dssp             HHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCC
Confidence            999875   23468899999999998765 5888888999999999999631111    112334   77788888663 


Q ss_pred             ------HHHHHHHhhccCcHHHHHHHHhcc--ChhHHHHHHHHHHHhhccCCChhHHHHHHhcC---------CHHHHHH
Q 015939          296 ------SEGRLALSEEASCAGRVVERVMKV--GKTAREDAVVVIWSMCCVYKDARVKEAVVNSN---------GLTKLLL  358 (398)
Q Consensus       296 ------~~~~~~i~~~~g~v~~Lv~~l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g---------~~~~Ll~  358 (398)
                            ..++..+. +.|+++.|++++...  ...++..|+.++..+...+  +.....+.+..         ++..|+.
T Consensus       295 ~~~~~t~~nQ~~~~-~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN--~~~Q~~fa~~~vp~~~~~p~li~lL~~  371 (651)
T 3grl_A          295 NPPGATSSCQKAMF-QCGLLQQLCTILMATGVPADILTETINTVSEVIRGC--QVNQDYFASVNAPSNPPRPAIVVLLMS  371 (651)
T ss_dssp             SCHHHHHHHHHHHH-HTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTC--HHHHHHHHHCEESSSSCEEHHHHHHHH
T ss_pred             CCCCCCHHHHHHHH-HCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCC--HHHHHHHhhccCCCCCCcChHHHHHHH
Confidence                  24566777 569999999999864  6788899999999988754  66777766532         2322333


Q ss_pred             HHhhcCcHHHHHHHHHHHHHHhc
Q 015939          359 VMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       359 ~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      ++.+......|-.|+.+++.+-.
T Consensus       372 ~~~~~~~~~lR~Aa~~cl~ay~~  394 (651)
T 3grl_A          372 MVNERQPFVLRCAVLYCFQCFLY  394 (651)
T ss_dssp             HTCTTSCHHHHHHHHHHHHHHHT
T ss_pred             HhcccccHHHHHHHHHHHHHHHh
Confidence            34444456778777777777653

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.53  E-value=7.9e-15  Score=106.75  Aligned_cols=62  Identities=23%  Similarity=0.297  Sum_probs=51.8

Q ss_pred             ccccCCCCcccccCccccCCCceecC-CCcccchhHHHHHHhc-CCCCCCcccccCCCC-CCccc
Q 015939            5 ELYIAVPNLFRCPISLDVMKSPVSLC-TGVTYDRSSIQHWLES-GHDTCPATMQILSTK-EFVPN   66 (398)
Q Consensus         5 ~~~~~~~~~~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~-~~~~CP~~~~~l~~~-~l~~n   66 (398)
                      +....+++++.||||.++|.|||+++ |||+||+.||.+|+.. +...||.|++++... .+.+|
T Consensus         7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~~n   71 (74)
T 2yur_A            7 GEDDPIPDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALSGP   71 (74)
T ss_dssp             SCCCCSCGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTTCT
T ss_pred             cccccCCCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccccC
Confidence            34567889999999999999999999 9999999999999975 346899999985543 44555

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.53  E-value=1e-15  Score=122.03  Aligned_cols=68  Identities=18%  Similarity=0.336  Sum_probs=62.2

Q ss_pred             cCCCCcccccCccccCCCceec-CCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHHh
Q 015939            8 IAVPNLFRCPISLDVMKSPVSL-CTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSH   78 (398)
Q Consensus         8 ~~~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~   78 (398)
                      ..+.+++.||||.++|.+||++ +|||+||+.||.+|+.   ..||.|+.++...++.+|..+..++..+..
T Consensus        17 ~~l~~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~~~~~~~n~~l~~l~~~~~~   85 (117)
T 1jm7_B           17 DRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAWIQDLKINRQLDSMIQLCSK   85 (117)
T ss_dssp             HHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCSCSSCCCCHHHHHHHHHHHH
T ss_pred             HhchhCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCccccccccHHHHHHHHHHHH
Confidence            4566789999999999999999 9999999999999986   679999999988899999999999998853

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.53  E-value=2e-15  Score=116.66  Aligned_cols=69  Identities=19%  Similarity=0.341  Sum_probs=60.8

Q ss_pred             CCCCcccccCccccCCCcee-cCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHH
Q 015939            9 AVPNLFRCPISLDVMKSPVS-LCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWS   77 (398)
Q Consensus         9 ~~~~~~~Cpi~~~~~~dPv~-~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~   77 (398)
                      .+.+++.||||.++|.+||+ ++|||+||+.||.+|+......||.||.++...++.+|..+..+++...
T Consensus        18 ~l~~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~l~~~~~~~~i~~~~~   87 (100)
T 3lrq_A           18 SIAEVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLRELVNCRWAEEVTQQLD   87 (100)
T ss_dssp             HHHHHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCEECTTHHHHHHHHH
T ss_pred             cCCCCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHHHhHhhHHHHHHHHHHH
Confidence            45678999999999999999 9999999999999999875578999999999889999987777766553

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.53  E-value=1.3e-15  Score=114.18  Aligned_cols=66  Identities=27%  Similarity=0.468  Sum_probs=57.5

Q ss_pred             cccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhc-----CCCCCCcccccCCCCCCcccHHHHH
Q 015939            6 LYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLES-----GHDTCPATMQILSTKEFVPNLTLHR   71 (398)
Q Consensus         6 ~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~-----~~~~CP~~~~~l~~~~l~~n~~l~~   71 (398)
                      ....+.+++.||||.+.|.+|++++|||+||+.||.+|+..     +...||.|+..+...++.+|..+++
T Consensus        12 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~   82 (85)
T 2ecw_A           12 VLEMIKEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFGNLKPNLHVAN   82 (85)
T ss_dssp             CCCCCCTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTTCCEECSCCCS
T ss_pred             HHHhCccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHHhCCcCHHHHH
Confidence            44567889999999999999999999999999999999975     2568999999999888888875543

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=1.1e-14  Score=105.46  Aligned_cols=61  Identities=11%  Similarity=0.184  Sum_probs=54.3

Q ss_pred             ccccCCCCcccccCccccCCCceec-CCCcccchhHHHHHHhcCCCCCCcccccCCCCCCccc
Q 015939            5 ELYIAVPNLFRCPISLDVMKSPVSL-CTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPN   66 (398)
Q Consensus         5 ~~~~~~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n   66 (398)
                      ....++.+++.||||.+.|.|||++ +|||+||+.||.+|+.. ...||.|++.+...++.+|
T Consensus         7 ~~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   68 (72)
T 2djb_A            7 GNLSELTPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQTQPLSG   68 (72)
T ss_dssp             CCCCCCCGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCSSCSCCC
T ss_pred             hhHhhcCCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCccccccc
Confidence            4556788899999999999999998 99999999999999975 6789999999998877665

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=1.1e-14  Score=102.53  Aligned_cols=54  Identities=26%  Similarity=0.492  Sum_probs=46.7

Q ss_pred             CcccccccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhc--CCCCCCcc
Q 015939            1 MVRQELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLES--GHDTCPAT   54 (398)
Q Consensus         1 ~~~~~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~--~~~~CP~~   54 (398)
                      |+.+.....+.+++.||||.+.|.+||+++|||+||+.||.+|+..  +...||.|
T Consensus         8 ~~~~~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A            8 MASGQFVNKLQEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCCCCCCCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             cchHHHHHhCccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            4445556678899999999999999999999999999999999974  45689987

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=1.8e-15  Score=113.38  Aligned_cols=66  Identities=21%  Similarity=0.483  Sum_probs=57.5

Q ss_pred             cccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhc-----CCCCCCcccccCCCCCCcccHHHHH
Q 015939            6 LYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLES-----GHDTCPATMQILSTKEFVPNLTLHR   71 (398)
Q Consensus         6 ~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~-----~~~~CP~~~~~l~~~~l~~n~~l~~   71 (398)
                      ....+++++.||||.+.|.+|++++|||+||+.||.+|+..     +...||.|+..+...++.+|..++.
T Consensus        12 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~~~~n~~l~~   82 (85)
T 2ecv_A           12 ILVNVKEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPENIRPNRHVAN   82 (85)
T ss_dssp             CCCCCCCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSSCCCSCCCCC
T ss_pred             HHHHccCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHhcCccHHHHH
Confidence            34577889999999999999999999999999999999864     3578999999999888888875543

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=2.2e-14  Score=106.44  Aligned_cols=63  Identities=19%  Similarity=0.142  Sum_probs=54.1

Q ss_pred             cccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHH
Q 015939            6 LYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLH   70 (398)
Q Consensus         6 ~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~   70 (398)
                      ...+...++.||||.+.|.+||+++|||+||+.||.+|+.. ...||.|+.++. ..+.+|..+.
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~-~~~~~~~~l~   70 (81)
T 2csy_A            8 GSEEEEIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRA-TPRCYICDQPTG-GIFNPAKELM   70 (81)
T ss_dssp             CSSCCCCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCC-SCCEECHHHH
T ss_pred             CcccCCCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHC-CCcCCCcCcccc-ccCCcHHHHH
Confidence            44566778999999999999999999999999999999975 678999999986 5677885443

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=99.50  E-value=8.5e-15  Score=116.83  Aligned_cols=70  Identities=20%  Similarity=0.385  Sum_probs=63.2

Q ss_pred             cCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHH
Q 015939            8 IAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWS   77 (398)
Q Consensus         8 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~   77 (398)
                      ..+++++.||||.++|.+||+++|||+||+.||.+|+..+...||.|+.++...++.++..+.+.+..+.
T Consensus        13 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~   82 (118)
T 3hct_A           13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLM   82 (118)
T ss_dssp             SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred             cCCCCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHccce
Confidence            4778889999999999999999999999999999999865568999999999988999998888887664

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=99.49  E-value=1e-14  Score=123.59  Aligned_cols=71  Identities=23%  Similarity=0.407  Sum_probs=61.9

Q ss_pred             CCCCcccccCccccCCCceec-CCCcccchhHHHHHHhcCCCCCCcccccCCC-CCCcccHHHHHHHHHHHhh
Q 015939            9 AVPNLFRCPISLDVMKSPVSL-CTGVTYDRSSIQHWLESGHDTCPATMQILST-KEFVPNLTLHRLIAHWSHQ   79 (398)
Q Consensus         9 ~~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~-~~l~~n~~l~~~i~~~~~~   79 (398)
                      .+.+++.||||.++|.+||++ +|||+||+.||.+|+..+...||.|+.++.. ..+.+|..+..+|..|...
T Consensus        50 ~~~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~~~~l~~~i~~~~~~  122 (165)
T 2ckl_B           50 SLHSELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKRSLRPDPNFDALISKIYPS  122 (165)
T ss_dssp             CCHHHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGGGEEECHHHHHHHHHHC--
T ss_pred             hCCCCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCcccCCcCHHHHHHHHHHHcc
Confidence            455678999999999999998 9999999999999998767889999999864 4689999999999988643

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.46  E-value=3e-14  Score=116.92  Aligned_cols=68  Identities=21%  Similarity=0.389  Sum_probs=54.2

Q ss_pred             CCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHHhhC
Q 015939           10 VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSHQL   80 (398)
Q Consensus        10 ~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~   80 (398)
                      +.+++.||||.+.|.|||+++|||+||+.||.+|+.. ..+||.||.++...+  +|..+...+..+....
T Consensus        50 ~~~~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~--~~~~~~~~i~~~~~~l  117 (138)
T 4ayc_A           50 LENELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKR-KIECPICRKDIKSKT--YSLVLDNCINKMVNNL  117 (138)
T ss_dssp             HHHHSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTT-CSBCTTTCCBCCCEE--ECHHHHHHHHHHHTTS
T ss_pred             ccccCCCcccCcccCCceECCCCCCccHHHHHHHHHc-CCcCCCCCCcCCCCC--CccchhHHHHHHHHHh
Confidence            3467899999999999999999999999999999975 678999999886442  4555555666554433

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=99.45  E-value=2.2e-14  Score=114.16  Aligned_cols=69  Identities=14%  Similarity=0.229  Sum_probs=57.6

Q ss_pred             cCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCc-ccHHHHHHHHHH
Q 015939            8 IAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFV-PNLTLHRLIAHW   76 (398)
Q Consensus         8 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~-~n~~l~~~i~~~   76 (398)
                      .++++++.||||.++|.|||+++|||+||+.||.+|+..+...||.|+.++...++. ++..+...+..+
T Consensus        18 ~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l   87 (116)
T 1rmd_A           18 AHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSL   87 (116)
T ss_dssp             HHHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHC
T ss_pred             HhccCCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHh
Confidence            345567899999999999999999999999999999987667899999999887764 466666665544

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.44  E-value=3.5e-14  Score=112.23  Aligned_cols=69  Identities=19%  Similarity=0.422  Sum_probs=59.5

Q ss_pred             CCCCcccccCccccCCCceecCCCcccchhHHHHHHhcC--CCCCCcccccCCCCCCcccHHHHHHHHHHH
Q 015939            9 AVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESG--HDTCPATMQILSTKEFVPNLTLHRLIAHWS   77 (398)
Q Consensus         9 ~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~--~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~   77 (398)
                      .+.+++.||||.+.|.+||+++|||+||+.||.+|+..+  ...||.|+.++...++.+|..+..+++.+.
T Consensus        17 ~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~~~~~~   87 (112)
T 1jm7_A           17 AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELL   87 (112)
T ss_dssp             HHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHH
T ss_pred             hccCCCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccHHHHHHHHHHH
Confidence            345678999999999999999999999999999999743  368999999999988888877777776664

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.44  E-value=5.4e-14  Score=99.59  Aligned_cols=55  Identities=20%  Similarity=0.312  Sum_probs=49.3

Q ss_pred             CcccccCccc-cCCCc----eecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCccc
Q 015939           12 NLFRCPISLD-VMKSP----VSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPN   66 (398)
Q Consensus        12 ~~~~Cpi~~~-~~~dP----v~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n   66 (398)
                      +++.||||.+ ++.+|    ++++|||+||+.||.+|+..+...||.|+.++...++.++
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~   61 (65)
T 1g25_A            2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNFRVQ   61 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCCEEE
T ss_pred             CCCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccccceee
Confidence            5789999999 99999    5789999999999999987767789999999998887665

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=99.43  E-value=3.2e-14  Score=116.75  Aligned_cols=68  Identities=18%  Similarity=0.295  Sum_probs=56.7

Q ss_pred             cCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCC---------CCCcccHHHHHHHHH
Q 015939            8 IAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILST---------KEFVPNLTLHRLIAH   75 (398)
Q Consensus         8 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~---------~~l~~n~~l~~~i~~   75 (398)
                      ..++++|.||||.++|.+||+++|||+||+.||.+|+..+...||.|+.++..         ..+.++..+++.|..
T Consensus        26 ~~l~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~  102 (141)
T 3knv_A           26 TKLEAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVES  102 (141)
T ss_dssp             GGCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHT
T ss_pred             ccCCcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHcc
Confidence            36778999999999999999999999999999999998766789999987532         245577777766654

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=99.38  E-value=2e-13  Score=116.19  Aligned_cols=70  Identities=20%  Similarity=0.385  Sum_probs=62.7

Q ss_pred             cCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHH
Q 015939            8 IAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWS   77 (398)
Q Consensus         8 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~   77 (398)
                      ..++++|.||||.++|.+||+++|||+||+.||.+|+..+...||.|+.++...++.++..+.+.+..+.
T Consensus        13 ~~~~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~   82 (170)
T 3hcs_A           13 PPLESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLM   82 (170)
T ss_dssp             SCCCGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSE
T ss_pred             cCCCCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhcc
Confidence            4678899999999999999999999999999999999765669999999999988999988888777653

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=3.6e-13  Score=92.98  Aligned_cols=50  Identities=22%  Similarity=0.476  Sum_probs=43.9

Q ss_pred             ccccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhc--CCCCCCcc
Q 015939            5 ELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLES--GHDTCPAT   54 (398)
Q Consensus         5 ~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~--~~~~CP~~   54 (398)
                      .....+.+++.||||.+.|.+||+++|||+||+.||.+|+..  +...||.|
T Consensus         7 ~~~~~~~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A            7 GALENLQVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             SCSSCSCCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             hHhhccccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            345577889999999999999999999999999999999864  46789987

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.35  E-value=7.6e-13  Score=99.67  Aligned_cols=58  Identities=24%  Similarity=0.402  Sum_probs=50.2

Q ss_pred             ccccCCCCcccccCccccCCC----ceecCCCcccchhHHHHHHhcC--CCCCCcccccCCCCC
Q 015939            5 ELYIAVPNLFRCPISLDVMKS----PVSLCTGVTYDRSSIQHWLESG--HDTCPATMQILSTKE   62 (398)
Q Consensus         5 ~~~~~~~~~~~Cpi~~~~~~d----Pv~~~~g~~~~r~~i~~~~~~~--~~~CP~~~~~l~~~~   62 (398)
                      .....+.+++.||||.+.|.+    |++++|||+||+.||.+|+...  ...||.|++.+...+
T Consensus         7 ~~~~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   70 (88)
T 2ct2_A            7 GNLDALREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRITS   70 (88)
T ss_dssp             CSCCCCCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCSS
T ss_pred             cChhhccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccchh
Confidence            345678889999999999999    9999999999999999999753  468999999887543

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.34  E-value=3.7e-13  Score=97.05  Aligned_cols=58  Identities=22%  Similarity=0.434  Sum_probs=51.1

Q ss_pred             cCCCCcccccCccccCCCc-------eecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCccc
Q 015939            8 IAVPNLFRCPISLDVMKSP-------VSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPN   66 (398)
Q Consensus         8 ~~~~~~~~Cpi~~~~~~dP-------v~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n   66 (398)
                      ....+++.||||.+.|.+|       ++++|||+||+.||.+|+.. ..+||.||.++...++.++
T Consensus         5 ~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   69 (71)
T 3ng2_A            5 LRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI   69 (71)
T ss_dssp             -CCTTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCCCSCCCC
T ss_pred             CCCCCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccChhheeec
Confidence            3556789999999999999       89999999999999999975 5689999999998887765

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=6e-13  Score=95.90  Aligned_cols=53  Identities=17%  Similarity=0.151  Sum_probs=46.7

Q ss_pred             cCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCC
Q 015939            8 IAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTK   61 (398)
Q Consensus         8 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~   61 (398)
                      ....+++.||||.+.|.+||+++|||+||+.||.+|+.. ...||.|++.+...
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~~   62 (71)
T 2d8t_A           10 APSLTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPED   62 (71)
T ss_dssp             CSSSSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCHH
T ss_pred             ccCCCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCHh
Confidence            345678899999999999999999999999999999975 47899999987644

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=99.33  E-value=1.3e-12  Score=95.45  Aligned_cols=57  Identities=14%  Similarity=0.174  Sum_probs=48.6

Q ss_pred             ccCCCCcccccCccccC--CCceecC--CCcccchhHHHHHHhcCCCCCCcccccCCCCCC
Q 015939            7 YIAVPNLFRCPISLDVM--KSPVSLC--TGVTYDRSSIQHWLESGHDTCPATMQILSTKEF   63 (398)
Q Consensus         7 ~~~~~~~~~Cpi~~~~~--~dPv~~~--~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l   63 (398)
                      ...+.+++.||||.+.+  .||++++  |||+||+.||.++|..+...||.||+++...++
T Consensus         5 ~~~~~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~   65 (78)
T 1e4u_A            5 PDAKEDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA   65 (78)
T ss_dssp             SCCCCCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred             ccccccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence            34568899999999999  5777776  999999999999997667889999999886654

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=1.3e-12  Score=93.49  Aligned_cols=54  Identities=20%  Similarity=0.362  Sum_probs=47.8

Q ss_pred             cccCCCCcccccCccccCCCc-------eecCCCcccchhHHHHHHhcCCCCCCcccccCCC
Q 015939            6 LYIAVPNLFRCPISLDVMKSP-------VSLCTGVTYDRSSIQHWLESGHDTCPATMQILST   60 (398)
Q Consensus         6 ~~~~~~~~~~Cpi~~~~~~dP-------v~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~   60 (398)
                      ....+++++.||||.+.|.+|       ++++|||+||+.||.+|+.. ...||.|++++..
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   68 (69)
T 2ea6_A            8 TGLRPSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH   68 (69)
T ss_dssp             CCCCTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCCC
T ss_pred             cccCCCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccCc
Confidence            445677889999999999999       89999999999999999986 6789999988764

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.26  E-value=3.8e-12  Score=93.49  Aligned_cols=60  Identities=25%  Similarity=0.407  Sum_probs=50.6

Q ss_pred             cccCCCCcccccCccccCCCc---eecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCccc
Q 015939            6 LYIAVPNLFRCPISLDVMKSP---VSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPN   66 (398)
Q Consensus         6 ~~~~~~~~~~Cpi~~~~~~dP---v~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n   66 (398)
                      .......++.||||.+.|.+|   ++++|||+||+.||.+|+.. ..+||.||..+...+..+|
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   70 (78)
T 2ect_A            8 TEEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQ-HDSCPVCRKSLTGQNTATN   70 (78)
T ss_dssp             CCTTSSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTT-TCSCTTTCCCCCCSCSCCC
T ss_pred             CcccCCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHc-CCcCcCcCCccCCcccCCC
Confidence            445667789999999999987   45699999999999999975 5789999999988776654

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.26  E-value=1.3e-12  Score=92.08  Aligned_cols=54  Identities=24%  Similarity=0.482  Sum_probs=48.2

Q ss_pred             CcccccCccccCCCc-------eecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCccc
Q 015939           12 NLFRCPISLDVMKSP-------VSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPN   66 (398)
Q Consensus        12 ~~~~Cpi~~~~~~dP-------v~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n   66 (398)
                      +++.||||.+.|.+|       ++++|||+||+.||.+|+.. ..+||.|+.++...++.++
T Consensus         2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~   62 (64)
T 2xeu_A            2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI   62 (64)
T ss_dssp             CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTTTCEEEC
T ss_pred             CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCccceeee
Confidence            468899999999998       89999999999999999986 6789999999988776654

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.21  E-value=1.1e-09  Score=95.87  Aligned_cols=186  Identities=13%  Similarity=0.089  Sum_probs=150.7

Q ss_pred             CCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhc
Q 015939          129 GGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISL  208 (398)
Q Consensus       129 ~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~  208 (398)
                      ++.++.|+..|++ .+  ..++..|+..|..+.               ..+.++.|+.+|.+.+..+|..|+.+|..+..
T Consensus        18 ~~~~~~L~~~L~~-~~--~~vR~~A~~~L~~~~---------------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~   79 (211)
T 3ltm_A           18 PEKVEMYIKNLQD-DS--YYVRRAAAYALGKIG---------------DERAVEPLIKALKDEDAWVRRAAADALGQIGD   79 (211)
T ss_dssp             GGGHHHHHHHTTC-SS--HHHHHHHHHHHHHHC---------------CGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCC
T ss_pred             HhHHHHHHHHHcC-CC--HHHHHHHHHHHHHhC---------------CccHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence            3789999999987 44  456688888886542               23568999999999999999999999988742


Q ss_pred             CchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHH
Q 015939          209 DNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKM  288 (398)
Q Consensus       209 ~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~  288 (398)
                                 .+.++.|+.+|.++ ++.++..++.+|..+..          .++++.|+.++.  ++++.++..|+.+
T Consensus        80 -----------~~~~~~L~~~l~~~-~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~--d~~~~vr~~a~~a  135 (211)
T 3ltm_A           80 -----------ERAVEPLIKALKDE-DGWVRQSAAVALGQIGD----------ERAVEPLIKALK--DEDWFVRIAAAFA  135 (211)
T ss_dssp             -----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT--CSSHHHHHHHHHH
T ss_pred             -----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHh--CCCHHHHHHHHHH
Confidence                       46789999999988 89999999999998753          357899999994  4789999999999


Q ss_pred             HHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHH
Q 015939          289 LSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIV  368 (398)
Q Consensus       289 L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~  368 (398)
                      |..+..           ...++.|+.++.+.++.++..|+.+|..+..             ..+++.|..+++.. ++.+
T Consensus       136 L~~~~~-----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-------------~~~~~~L~~~l~d~-~~~v  190 (211)
T 3ltm_A          136 LGEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG-------------ERVRAAMEKLAETG-TGFA  190 (211)
T ss_dssp             HHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-------------HHHHHHHHHHHHHC-CHHH
T ss_pred             HHHcCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-------------hhHHHHHHHHHhCC-CHHH
Confidence            998853           3578889999988999999999999988853             22456677777765 7999


Q ss_pred             HHHHHHHHHHHhc
Q 015939          369 RKMCGDLVKVLGK  381 (398)
Q Consensus       369 k~~A~~lL~~l~~  381 (398)
                      |..|...|..+..
T Consensus       191 r~~A~~aL~~~~~  203 (211)
T 3ltm_A          191 RKVAVNYLETHKS  203 (211)
T ss_dssp             HHHHHHHHHC---
T ss_pred             HHHHHHHHHhcCC
Confidence            9999999998877

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.17  E-value=2.8e-09  Score=92.57  Aligned_cols=185  Identities=14%  Similarity=0.100  Sum_probs=150.3

Q ss_pred             CcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC
Q 015939          130 GFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD  209 (398)
Q Consensus       130 g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~  209 (398)
                      +..+.++.+|++ .+  ..++..|+.+|..+.               ..+.++.|+..|.++++.+|..|+.+|..+.. 
T Consensus        14 ~~~~~~i~~L~~-~~--~~vr~~A~~~L~~~~---------------~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~-   74 (201)
T 3ltj_A           14 EKVEMYIKNLQD-DS--YYVRRAAAYALGKIG---------------DERAVEPLIKALKDEDAWVRRAAADALGQIGD-   74 (201)
T ss_dssp             HHHHHHHHHTTC-SC--HHHHHHHHHHHHHHC---------------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-
T ss_pred             cchHHHHHHhcC-CC--HHHHHHHHHHHHhcC---------------ChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC-
Confidence            668888999988 44  456688998887543               23568999999999999999999999987642 


Q ss_pred             chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHH
Q 015939          210 NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKML  289 (398)
Q Consensus       210 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L  289 (398)
                                .+.++.|+.+|.++ ++.++..|+++|..+..          ..+++.|+.+|.  ++++.++..|+.+|
T Consensus        75 ----------~~~~~~L~~~l~d~-~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~--d~~~~vr~~a~~aL  131 (201)
T 3ltj_A           75 ----------ERAVEPLIKALKDE-DGWVRQSAAVALGQIGD----------ERAVEPLIKALK--DEDWFVRIAAAFAL  131 (201)
T ss_dssp             ----------GGGHHHHHHHTTCS-SHHHHHHHHHHHHHHCC----------GGGHHHHHHHTT--CSSHHHHHHHHHHH
T ss_pred             ----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHc--CCCHHHHHHHHHHH
Confidence                      46789999999998 99999999999998753          347899999995  47899999999999


Q ss_pred             HHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHH
Q 015939          290 SIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVR  369 (398)
Q Consensus       290 ~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k  369 (398)
                      ..+..           ...++.|+.++.+.++.++..|+.+|..+..    ++         +++.|..+++.. ++.+|
T Consensus       132 ~~~~~-----------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~----~~---------~~~~L~~~l~d~-~~~vr  186 (201)
T 3ltj_A          132 GEIGD-----------ERAVEPLIKALKDEDGWVRQSAADALGEIGG----ER---------VRAAMEKLAETG-TGFAR  186 (201)
T ss_dssp             HHHTC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS----HH---------HHHHHHHHHHHC-CHHHH
T ss_pred             HHhCC-----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----hh---------HHHHHHHHHhCC-CHHHH
Confidence            98853           4678899999999999999999999988842    22         566777778765 89999


Q ss_pred             HHHHHHHHHHhc
Q 015939          370 KMCGDLVKVLGK  381 (398)
Q Consensus       370 ~~A~~lL~~l~~  381 (398)
                      ..|...|..+..
T Consensus       187 ~~A~~aL~~l~~  198 (201)
T 3ltj_A          187 KVAVNYLETHKS  198 (201)
T ss_dssp             HHHHHHHHHCC-
T ss_pred             HHHHHHHHHHHh
Confidence            999999987754

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=99.17  E-value=8.7e-12  Score=85.12  Aligned_cols=47  Identities=17%  Similarity=0.134  Sum_probs=41.5

Q ss_pred             CCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCC
Q 015939           11 PNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTK   61 (398)
Q Consensus        11 ~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~   61 (398)
                      .+++.||||.+.|.+|++++|||+||+.||.+|    ...||.|++.+...
T Consensus         4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~~~   50 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLG   50 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCC
T ss_pred             ccCCCceEeCCccCCeEEcCCCCcccHHHHccC----CCCCCcCCcEeecC
Confidence            467889999999999999999999999999884    56799999987644

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=2.8e-11  Score=87.81  Aligned_cols=59  Identities=17%  Similarity=0.256  Sum_probs=49.5

Q ss_pred             ccccccCCCCcccccCccccCCCceec---CCCcccchhHHHHHHhcCCCCCCcccccCCCCC
Q 015939            3 RQELYIAVPNLFRCPISLDVMKSPVSL---CTGVTYDRSSIQHWLESGHDTCPATMQILSTKE   62 (398)
Q Consensus         3 ~~~~~~~~~~~~~Cpi~~~~~~dPv~~---~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~   62 (398)
                      ......++..+..||||.+.|.+|..+   +|||.||+.||.+|+.. ..+||.||.++....
T Consensus         5 s~~~~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~~   66 (74)
T 2ep4_A            5 SSGKVKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQLA   66 (74)
T ss_dssp             CCSCCCCCCCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSCC
T ss_pred             cccccccCCCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccccc
Confidence            344556778889999999999988766   99999999999999976 458999999886543

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=9.2e-12  Score=89.33  Aligned_cols=54  Identities=17%  Similarity=0.343  Sum_probs=48.0

Q ss_pred             ccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCC
Q 015939            7 YIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKE   62 (398)
Q Consensus         7 ~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~   62 (398)
                      ...+.+++.||||.+.+.+ ++++|||+||+.||.+|+. ....||.||.++...+
T Consensus         9 ~~~~~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~   62 (70)
T 2ecn_A            9 VKQLTDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGAN   62 (70)
T ss_dssp             CCCCCCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCC
T ss_pred             hhcCCCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCC
Confidence            4467788999999999999 9999999999999999997 4778999999988654

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.16  E-value=2.6e-09  Score=97.92  Aligned_cols=226  Identities=9%  Similarity=-0.001  Sum_probs=152.3

Q ss_pred             HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc
Q 015939           86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG  165 (398)
Q Consensus        86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~  165 (398)
                      .++.+++.|.+++..  .+..|+..|..+..           . +.++.|+.+|++ .+  ..++..|+.+|..+.....
T Consensus        24 ~i~~L~~~L~~~~~~--vr~~A~~~L~~~~~-----------~-~~~~~L~~~l~d-~~--~~vR~~A~~aL~~l~~~~~   86 (280)
T 1oyz_A           24 NDDELFRLLDDHNSL--KRISSARVLQLRGG-----------Q-DAVRLAIEFCSD-KN--YIRRDIGAFILGQIKICKK   86 (280)
T ss_dssp             CHHHHHHHTTCSSHH--HHHHHHHHHHHHCC-----------H-HHHHHHHHHHTC-SS--HHHHHHHHHHHHHSCCCTT
T ss_pred             hHHHHHHHHHcCCHH--HHHHHHHHHHccCC-----------c-hHHHHHHHHHcC-CC--HHHHHHHHHHHHHhccccc
Confidence            367788888776543  77888888887652           2 678888998887 43  4566889999987754222


Q ss_pred             hHHHhhHhhhccCCChHHHHH-HHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHH
Q 015939          166 VKEKLNRLILNTYNCLPLFLE-ILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILS  244 (398)
Q Consensus       166 ~~~~~~~~il~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~  244 (398)
                      ..    .      ..++.|.+ ++++.+..+|..++++|..+.....    ... ..+++.|+.+|.++ ++.++..++.
T Consensus        87 ~~----~------~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~----~~~-~~~~~~L~~~l~d~-~~~vR~~a~~  150 (280)
T 1oyz_A           87 CE----D------NVFNILNNMALNDKSACVRATAIESTAQRCKKNP----IYS-PKIVEQSQITAFDK-STNVRRATAF  150 (280)
T ss_dssp             TH----H------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCG----GGH-HHHHHHHHHHTTCS-CHHHHHHHHH
T ss_pred             cc----h------HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCC----ccc-HHHHHHHHHHhhCC-CHHHHHHHHH
Confidence            10    1      12344443 4566788999999999998864321    012 46788889999888 8889999999


Q ss_pred             HHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHH
Q 015939          245 ILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAR  324 (398)
Q Consensus       245 aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~  324 (398)
                      +|.++..          .++++.|+.++.  ++++.++..|+.+|..+...         ...+++.|+.++.+.++.++
T Consensus       151 aL~~~~~----------~~~~~~L~~~l~--d~~~~vr~~a~~aL~~~~~~---------~~~~~~~L~~~l~d~~~~vR  209 (280)
T 1oyz_A          151 AISVIND----------KATIPLLINLLK--DPNGDVRNWAAFAININKYD---------NSDIRDCFVEMLQDKNEEVR  209 (280)
T ss_dssp             HHHTC-------------CCHHHHHHHHT--CSSHHHHHHHHHHHHHHTCC---------CHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHhcCC----------HHHHHHHHHHHc--CCCHHHHHHHHHHHHhhccC---------cHHHHHHHHHHhcCCCHHHH
Confidence            9987643          358899999985  46788888999998887421         12456677777777888888


Q ss_pred             HHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          325 EDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       325 ~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      ..|+.+|..+..             ..+++.|+..++..   .+|..|...|..+..
T Consensus       210 ~~A~~aL~~~~~-------------~~~~~~L~~~l~d~---~vr~~a~~aL~~i~~  250 (280)
T 1oyz_A          210 IEAIIGLSYRKD-------------KRVLSVLCDELKKN---TVYDDIIEAAGELGD  250 (280)
T ss_dssp             HHHHHHHHHTTC-------------GGGHHHHHHHHTSS---SCCHHHHHHHHHHCC
T ss_pred             HHHHHHHHHhCC-------------HhhHHHHHHHhcCc---cHHHHHHHHHHhcCc
Confidence            888888877652             12445555555432   145555555555443

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.15  E-value=2.6e-09  Score=93.62  Aligned_cols=188  Identities=15%  Similarity=0.079  Sum_probs=148.9

Q ss_pred             HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939           84 EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE  163 (398)
Q Consensus        84 ~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~  163 (398)
                      .+.++.+++.|.+++.  ..+..|+..|..+..           . ++++.|+.+|.+ .  +..++..|+.+|..+.  
T Consensus        18 ~~~~~~L~~~L~~~~~--~vR~~A~~~L~~~~~-----------~-~~~~~L~~~l~~-~--~~~vr~~a~~aL~~~~--   78 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSY--YVRRAAAYALGKIGD-----------E-RAVEPLIKALKD-E--DAWVRRAAADALGQIG--   78 (211)
T ss_dssp             GGGHHHHHHHTTCSSH--HHHHHHHHHHHHHCC-----------G-GGHHHHHHHTTC-S--CHHHHHHHHHHHHHHC--
T ss_pred             HhHHHHHHHHHcCCCH--HHHHHHHHHHHHhCC-----------c-cHHHHHHHHHcC-C--CHHHHHHHHHHHHhhC--
Confidence            3567888999886654  478888888877642           2 778999999987 4  4566788998887653  


Q ss_pred             cchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHH
Q 015939          164 NGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAIL  243 (398)
Q Consensus       164 ~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~  243 (398)
                                   ..+.++.|+..|++.++.+|..|+.+|..+..           .+.++.|+.+|+++ ++.++..++
T Consensus        79 -------------~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~a~  133 (211)
T 3ltm_A           79 -------------DERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDE-DWFVRIAAA  133 (211)
T ss_dssp             -------------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS-SHHHHHHHH
T ss_pred             -------------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCC-CHHHHHHHH
Confidence                         23468899999999999999999999988742           46789999999888 899999999


Q ss_pred             HHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhH
Q 015939          244 SILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTA  323 (398)
Q Consensus       244 ~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~  323 (398)
                      .+|..+..          ..+++.|+.++.  ++++.++..|+.+|..+..           ..+++.|..++.+.++.+
T Consensus       134 ~aL~~~~~----------~~~~~~L~~~l~--d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~~~~v  190 (211)
T 3ltm_A          134 FALGEIGD----------ERAVEPLIKALK--DEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFA  190 (211)
T ss_dssp             HHHHHHCC----------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHH
T ss_pred             HHHHHcCC----------HHHHHHHHHHHc--CCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHH
Confidence            99999843          347899999994  4788999999999999853           346777888899999999


Q ss_pred             HHHHHHHHHHhhccC
Q 015939          324 REDAVVVIWSMCCVY  338 (398)
Q Consensus       324 ~~~a~~~L~~l~~~~  338 (398)
                      +..|..+|..+....
T Consensus       191 r~~A~~aL~~~~~~~  205 (211)
T 3ltm_A          191 RKVAVNYLETHKSFN  205 (211)
T ss_dssp             HHHHHHHHHC-----
T ss_pred             HHHHHHHHHhcCCCC
Confidence            999999998887653

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.15  E-value=4.8e-09  Score=91.09  Aligned_cols=185  Identities=15%  Similarity=0.082  Sum_probs=150.1

Q ss_pred             HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939           84 EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE  163 (398)
Q Consensus        84 ~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~  163 (398)
                      ....+.+++.|.+++..  .+..|+..|..+..           . +.++.|+.+|.+ .  +..++..|+.+|..+.  
T Consensus        13 ~~~~~~~i~~L~~~~~~--vr~~A~~~L~~~~~-----------~-~~~~~L~~~l~~-~--~~~vr~~a~~~L~~~~--   73 (201)
T 3ltj_A           13 PEKVEMYIKNLQDDSYY--VRRAAAYALGKIGD-----------E-RAVEPLIKALKD-E--DAWVRRAAADALGQIG--   73 (201)
T ss_dssp             HHHHHHHHHHTTCSCHH--HHHHHHHHHHHHCC-----------G-GGHHHHHHHTTC-S--SHHHHHHHHHHHHHHC--
T ss_pred             CcchHHHHHHhcCCCHH--HHHHHHHHHHhcCC-----------h-hHHHHHHHHHcC-C--CHHHHHHHHHHHHhhC--
Confidence            56678899999888764  88888888876643           2 678999999976 4  4556788888886553  


Q ss_pred             cchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHH
Q 015939          164 NGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAIL  243 (398)
Q Consensus       164 ~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~  243 (398)
                                   ..+.++.|+..|.+.++.+|..|+++|..+..           ...++.|+.+|+++ ++.++..++
T Consensus        74 -------------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~a~  128 (201)
T 3ltj_A           74 -------------DERAVEPLIKALKDEDGWVRQSAAVALGQIGD-----------ERAVEPLIKALKDE-DWFVRIAAA  128 (201)
T ss_dssp             -------------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCS-SHHHHHHHH
T ss_pred             -------------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHcCC-CHHHHHHHH
Confidence                         23468899999999999999999999988642           45789999999888 899999999


Q ss_pred             HHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhH
Q 015939          244 SILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTA  323 (398)
Q Consensus       244 ~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~  323 (398)
                      .+|..+..          .++++.|+.++.  ++++.++..|+.+|..+..           ..+++.|..++.+.++.+
T Consensus       129 ~aL~~~~~----------~~~~~~L~~~l~--d~~~~vr~~A~~aL~~~~~-----------~~~~~~L~~~l~d~~~~v  185 (201)
T 3ltj_A          129 FALGEIGD----------ERAVEPLIKALK--DEDGWVRQSAADALGEIGG-----------ERVRAAMEKLAETGTGFA  185 (201)
T ss_dssp             HHHHHHTC----------GGGHHHHHHHTT--CSSHHHHHHHHHHHHHHCS-----------HHHHHHHHHHHHHCCHHH
T ss_pred             HHHHHhCC----------HHHHHHHHHHHc--CCCHHHHHHHHHHHHHhCc-----------hhHHHHHHHHHhCCCHHH
Confidence            99998853          458899999995  4788999999999999842           346777888888899999


Q ss_pred             HHHHHHHHHHhh
Q 015939          324 REDAVVVIWSMC  335 (398)
Q Consensus       324 ~~~a~~~L~~l~  335 (398)
                      +..|..+|..+.
T Consensus       186 r~~A~~aL~~l~  197 (201)
T 3ltj_A          186 RKVAVNYLETHK  197 (201)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHH
Confidence            999999998765

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.14  E-value=2.9e-11  Score=86.17  Aligned_cols=48  Identities=23%  Similarity=0.397  Sum_probs=42.6

Q ss_pred             CcccccCccccCCCc-eecCCCcccchhHHHHHHhcCCCCCCcccccCCC
Q 015939           12 NLFRCPISLDVMKSP-VSLCTGVTYDRSSIQHWLESGHDTCPATMQILST   60 (398)
Q Consensus        12 ~~~~Cpi~~~~~~dP-v~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~   60 (398)
                      .+..||||.+.+.+| ++++|||+||+.||.+|+.. ..+||.|+.++..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~   52 (68)
T 1chc_A            4 VAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVES   52 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCC
T ss_pred             CCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHh
Confidence            466899999999997 78899999999999999975 5789999988763

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.12  E-value=3.7e-11  Score=81.73  Aligned_cols=47  Identities=26%  Similarity=0.396  Sum_probs=41.8

Q ss_pred             CcccccCccccCCC----ceecCCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939           12 NLFRCPISLDVMKS----PVSLCTGVTYDRSSIQHWLESGHDTCPATMQILS   59 (398)
Q Consensus        12 ~~~~Cpi~~~~~~d----Pv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~   59 (398)
                      .+..||||.+.+.+    |++++|||.|++.||.+|+..+ ..||.|+.++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~-~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEG-YRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHT-CCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcC-CcCCCCCCcCC
Confidence            46789999999977    8899999999999999999864 78999998764

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.11  E-value=9.1e-11  Score=83.81  Aligned_cols=54  Identities=15%  Similarity=0.327  Sum_probs=45.3

Q ss_pred             ccCCCCcccccCccccCC---CceecCCCcccchhHHHHHHhcCCCCCCcccccCCCC
Q 015939            7 YIAVPNLFRCPISLDVMK---SPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTK   61 (398)
Q Consensus         7 ~~~~~~~~~Cpi~~~~~~---dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~   61 (398)
                      ..+...+..||||.+.|.   +|++++|||.||+.||.+|+.. ..+||.|+..+...
T Consensus         8 ~~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~   64 (69)
T 2kiz_A            8 GTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEAQ   64 (69)
T ss_dssp             CCSTTCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCSC
T ss_pred             cCcCCCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccCc
Confidence            345667789999999884   5688999999999999999976 55799999987654

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.10  E-value=6.1e-11  Score=80.64  Aligned_cols=48  Identities=23%  Similarity=0.499  Sum_probs=42.7

Q ss_pred             CCCcccccCccccCCC---ceecC-CCcccchhHHHHHHhcCCCCCCcccccC
Q 015939           10 VPNLFRCPISLDVMKS---PVSLC-TGVTYDRSSIQHWLESGHDTCPATMQIL   58 (398)
Q Consensus        10 ~~~~~~Cpi~~~~~~d---Pv~~~-~g~~~~r~~i~~~~~~~~~~CP~~~~~l   58 (398)
                      +.++..||||.+.|.+   |++++ |||.|++.||.+|+.. ..+||.||..+
T Consensus         2 ~~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~   53 (55)
T 1iym_A            2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV   53 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred             CCCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEe
Confidence            4567889999999999   88897 9999999999999975 67899999875

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.09  E-value=2.4e-11  Score=98.77  Aligned_cols=55  Identities=24%  Similarity=0.455  Sum_probs=48.7

Q ss_pred             CCcccccCccccCCCc-------eecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCccc
Q 015939           11 PNLFRCPISLDVMKSP-------VSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPN   66 (398)
Q Consensus        11 ~~~~~Cpi~~~~~~dP-------v~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n   66 (398)
                      ++++.||||.+.|.+|       |+++|||+||+.||.+|+.. ..+||.|++.+...++.++
T Consensus         5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~l~~l   66 (133)
T 4ap4_A            5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI   66 (133)
T ss_dssp             CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTTTCEEEC
T ss_pred             CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcccccccc
Confidence            5678999999999999       99999999999999999975 5689999999987766544

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.07  E-value=8.9e-11  Score=88.74  Aligned_cols=50  Identities=20%  Similarity=0.434  Sum_probs=44.0

Q ss_pred             CCCcccccCccccCCC---ceecCCCcccchhHHHHHHhcCCCCCCcccccCCC
Q 015939           10 VPNLFRCPISLDVMKS---PVSLCTGVTYDRSSIQHWLESGHDTCPATMQILST   60 (398)
Q Consensus        10 ~~~~~~Cpi~~~~~~d---Pv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~   60 (398)
                      ..++..||||.+.|.+   +++++|||.||+.||.+|+.. ..+||.|+..+..
T Consensus        37 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~-~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           37 VGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQK-SGTCPVCRCMFPP   89 (91)
T ss_dssp             SSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTT-TCBCTTTCCBSSC
T ss_pred             cCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHc-CCcCcCcCccCCC
Confidence            4467789999999998   999999999999999999975 6689999988754

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.06  E-value=7e-09  Score=94.99  Aligned_cols=225  Identities=10%  Similarity=-0.006  Sum_probs=162.3

Q ss_pred             HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939           85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN  164 (398)
Q Consensus        85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~  164 (398)
                      ..++.+++.+.+.+..  .+..|+..|..+......    +.   ..++.|...+.+  +.+..++..++.+|..+....
T Consensus        54 ~~~~~L~~~l~d~~~~--vR~~A~~aL~~l~~~~~~----~~---~l~~~L~~~~~~--d~~~~vr~~a~~aL~~l~~~~  122 (280)
T 1oyz_A           54 DAVRLAIEFCSDKNYI--RRDIGAFILGQIKICKKC----ED---NVFNILNNMALN--DKSACVRATAIESTAQRCKKN  122 (280)
T ss_dssp             HHHHHHHHHHTCSSHH--HHHHHHHHHHHSCCCTTT----HH---HHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHcCCCHH--HHHHHHHHHHHhcccccc----ch---HHHHHHHHHHhc--CCCHHHHHHHHHHHHHHhccC
Confidence            4677788888776543  778888888776532111    10   123333322222  345667899999999886432


Q ss_pred             chHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHH
Q 015939          165 GVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILS  244 (398)
Q Consensus       165 ~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~  244 (398)
                      ...         ....++.|+..|++.++.+|..|+.+|..+..           .++++.|+.+|+++ ++.++..+++
T Consensus       123 ~~~---------~~~~~~~L~~~l~d~~~~vR~~a~~aL~~~~~-----------~~~~~~L~~~l~d~-~~~vr~~a~~  181 (280)
T 1oyz_A          123 PIY---------SPKIVEQSQITAFDKSTNVRRATAFAISVIND-----------KATIPLLINLLKDP-NGDVRNWAAF  181 (280)
T ss_dssp             GGG---------HHHHHHHHHHHTTCSCHHHHHHHHHHHHTC--------------CCHHHHHHHHTCS-SHHHHHHHHH
T ss_pred             Ccc---------cHHHHHHHHHHhhCCCHHHHHHHHHHHHhcCC-----------HHHHHHHHHHHcCC-CHHHHHHHHH
Confidence            210         12458899999999999999999999987643           34789999999988 8999999999


Q ss_pred             HHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHH
Q 015939          245 ILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAR  324 (398)
Q Consensus       245 aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~  324 (398)
                      +|..+....        ..+++.|+.++.  ++++.++..|+.+|..+.           +..+++.|+..+.+.+  ++
T Consensus       182 aL~~~~~~~--------~~~~~~L~~~l~--d~~~~vR~~A~~aL~~~~-----------~~~~~~~L~~~l~d~~--vr  238 (280)
T 1oyz_A          182 AININKYDN--------SDIRDCFVEMLQ--DKNEEVRIEAIIGLSYRK-----------DKRVLSVLCDELKKNT--VY  238 (280)
T ss_dssp             HHHHHTCCC--------HHHHHHHHHHTT--CSCHHHHHHHHHHHHHTT-----------CGGGHHHHHHHHTSSS--CC
T ss_pred             HHHhhccCc--------HHHHHHHHHHhc--CCCHHHHHHHHHHHHHhC-----------CHhhHHHHHHHhcCcc--HH
Confidence            999885322        236788999995  478899999999998875           3468889999887643  88


Q ss_pred             HHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015939          325 EDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVK  377 (398)
Q Consensus       325 ~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~  377 (398)
                      ..|+.+|..+..             ..+++.|..+++...++..+..+...|+
T Consensus       239 ~~a~~aL~~i~~-------------~~~~~~L~~~l~~~~~~~~~~~~~~~l~  278 (280)
T 1oyz_A          239 DDIIEAAGELGD-------------KTLLPVLDTMLYKFDDNEIITSAIDKLK  278 (280)
T ss_dssp             HHHHHHHHHHCC-------------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCc-------------hhhhHHHHHHHhcCCCcHHHHHHHHHhh
Confidence            899988887753             2568889999977667788887776654

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=99.06  E-value=1.3e-11  Score=89.49  Aligned_cols=48  Identities=17%  Similarity=0.218  Sum_probs=42.8

Q ss_pred             cCCCCcccccCccccCCCceecCCCcc-cchhHHHHHHhcCCCCCCcccccCCC
Q 015939            8 IAVPNLFRCPISLDVMKSPVSLCTGVT-YDRSSIQHWLESGHDTCPATMQILST   60 (398)
Q Consensus         8 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~-~~r~~i~~~~~~~~~~CP~~~~~l~~   60 (398)
                      ..+.+++.||||.+.+.|||+++|||+ ||+.|+.+|     ..||.||+++..
T Consensus        19 ~~~~~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~   67 (74)
T 4ic3_A           19 RRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITF   67 (74)
T ss_dssp             HHHHHHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSE
T ss_pred             hcCccCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccC
Confidence            345567899999999999999999999 999999999     679999998764

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.03  E-value=7.2e-09  Score=107.13  Aligned_cols=194  Identities=13%  Similarity=0.136  Sum_probs=146.9

Q ss_pred             hHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHH-HhccccCHHHHHHHHHHHHHhcC--CcchHH
Q 015939          181 LPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFD-YLKLAEDQALNDAILSILITLSV--YRSVKA  257 (398)
Q Consensus       181 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~-lL~~~~~~~~~~~a~~aL~~Ls~--~~~~~~  257 (398)
                      |.++++.|++.+++.|..|+.+|.+|+.++..+..+.. .|++..++. +|.+. +.+++.+|+++|.||+.  +.+.+.
T Consensus        36 i~Pll~~L~S~~~~~r~~A~~al~~l~~~~~~~~l~~~-~~~v~~ll~~lL~D~-~~~Vr~~A~gaLrnL~~~~g~d~~~  113 (684)
T 4gmo_A           36 ILPVLKDLKSPDAKSRTTAAGAIANIVQDAKCRKLLLR-EQVVHIVLTETLTDN-NIDSRAAGWEILKVLAQEEEADFCV  113 (684)
T ss_dssp             THHHHHHHSSSCCSHHHHHHHHHHHHTTSHHHHHHHHH-TTHHHHHHHTTTTCS-CHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred             HHHHHHHcCCCCHHHHHHHHHHHHHHHcCcHHHHHHHH-cCCHHHHHHHHcCCC-CHHHHHHHHHHHHHHHhhcCchHHH
Confidence            44567789999999999999999999998888888877 788877654 67777 89999999999999985  457899


Q ss_pred             HHHHcCChHHHHHHhcccCc-------------------chhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHh
Q 015939          258 QLVELGMVQILTRILSDSRT-------------------QILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVM  317 (398)
Q Consensus       258 ~~v~~g~v~~Lv~lL~~~~~-------------------~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~  317 (398)
                      .+++.|++++|..++.....                   -..+.+.++.+|.+||. +++....+. ..|.++.|+..+.
T Consensus       114 ~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~-~~~~l~~l~~~L~  192 (684)
T 4gmo_A          114 HLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVA-TKQTILRLLFRLI  192 (684)
T ss_dssp             HHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHH-TCHHHHHHHHHHH
T ss_pred             HHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHH-hcccHHHHHHHHH
Confidence            99999999999999852100                   01345678889999986 566677777 4689999999986


Q ss_pred             c---cChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHH--HHHHHHhhcCcHHHHHHHHHHHHHHh
Q 015939          318 K---VGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLT--KLLLVMQSENEGIVRKMCGDLVKVLG  380 (398)
Q Consensus       318 ~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~--~Ll~~l~~~~~~~~k~~A~~lL~~l~  380 (398)
                      .   ....++..|+.+|..++..+  ......+.+.|...  .++..+..+ +...|.-++.+|.++.
T Consensus       193 ~~~~~~~~v~~~a~~~L~~ls~dn--~~~~~~i~~~~~~~~~~~ll~~~~~-~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          193 SADIAPQDIYEEAISCLTTLSEDN--LKVGQAITDDQETHVYDVLLKLATG-TDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HHCCSCHHHHHHHHHHHHHHHTTC--HHHHHHHHTCCSSCHHHHHHHHHHS-SCTTHHHHHHHHHHHH
T ss_pred             hcCCCcHHHHHHHHHHHHHHhccC--HHHHHHHHhcchHHHHHHHHHHhcC-CcHHHHHHHHHHHhHh
Confidence            5   34678999999999999754  67777788776532  333333444 3344556666776653

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.03  E-value=3.5e-11  Score=87.44  Aligned_cols=51  Identities=18%  Similarity=0.215  Sum_probs=42.9

Q ss_pred             cccCCCCcccccCccccCCCceecCCCcc-cchhHHHHHHhcCCCCCCcccccCCCC
Q 015939            6 LYIAVPNLFRCPISLDVMKSPVSLCTGVT-YDRSSIQHWLESGHDTCPATMQILSTK   61 (398)
Q Consensus         6 ~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~-~~r~~i~~~~~~~~~~CP~~~~~l~~~   61 (398)
                      ....+.+++.||||.+.+.+||+++|||+ ||+.|+.++     ..||.||+++...
T Consensus        18 ~~~~~~~~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~   69 (75)
T 2ecg_A           18 QLRRLQEEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITFK   69 (75)
T ss_dssp             HHHHHHHHHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC-----SBCTTTCCBCCCC
T ss_pred             HHHcCCCCCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC-----CCCccCCceecCc
Confidence            33455667899999999999999999999 999999643     6799999988653

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.02  E-value=1.6e-10  Score=83.99  Aligned_cols=50  Identities=16%  Similarity=0.327  Sum_probs=43.8

Q ss_pred             CCcccccCccccCCCc---eecCCCcccchhHHHHHHhcCCCCCCcccccCCCC
Q 015939           11 PNLFRCPISLDVMKSP---VSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTK   61 (398)
Q Consensus        11 ~~~~~Cpi~~~~~~dP---v~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~   61 (398)
                      .++..||||.+.|.+|   ++++|||.|++.||.+|+.. ..+||.||+.+...
T Consensus        21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~~   73 (75)
T 1x4j_A           21 SEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGPS   73 (75)
T ss_dssp             SSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCCC
T ss_pred             CCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCCC
Confidence            4567899999999998   88999999999999999976 56899999887653

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.02  E-value=2.2e-10  Score=90.53  Aligned_cols=52  Identities=15%  Similarity=0.209  Sum_probs=43.9

Q ss_pred             CCCcccccCccccCCCce------------------ecCCCcccchhHHHHHHhc----CCCCCCcccccCCCC
Q 015939           10 VPNLFRCPISLDVMKSPV------------------SLCTGVTYDRSSIQHWLES----GHDTCPATMQILSTK   61 (398)
Q Consensus        10 ~~~~~~Cpi~~~~~~dPv------------------~~~~g~~~~r~~i~~~~~~----~~~~CP~~~~~l~~~   61 (398)
                      .+.+..||||++.|.+|+                  +++|||.||+.||.+|+..    +..+||.||..+...
T Consensus        22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T 1v87_A           22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence            445679999999999987                  7899999999999999952    356899999988644

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.95  E-value=1.7e-08  Score=107.01  Aligned_cols=279  Identities=11%  Similarity=0.094  Sum_probs=182.3

Q ss_pred             HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhh--hhh-hcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhh
Q 015939           84 EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRR--FLA-SYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLI  160 (398)
Q Consensus        84 ~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~--~i~-~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l  160 (398)
                      ++-++.+++.+.+.+..  .+..++..|..++...+....  .+. ...+.++.|+.++++   .+..++..|+.+|..+
T Consensus       127 p~ll~~L~~~l~~~~~~--~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~---~~~~vR~~A~~aL~~~  201 (852)
T 4fdd_A          127 PDLLPKLCSLLDSEDYN--TCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKH---SSPKIRSHAVACVNQF  201 (852)
T ss_dssp             TTHHHHHHHHHSCSSHH--HHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTC---SSHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHcCCCHH--HHHHHHHHHHHHHHHhHHHhchhhhcchHHHHHHHHHHHhcC---CCHHHHHHHHHHHHHH
Confidence            34577777777766543  777888999988876443211  000 011456666666665   3456779999999887


Q ss_pred             hcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHH
Q 015939          161 VNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALND  240 (398)
Q Consensus       161 ~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~  240 (398)
                      ......     ...-.-.+.++.++.++.+++.++|..++.+|..++........ ....++++.++.++++. +++++.
T Consensus       202 ~~~~~~-----~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~-~~l~~l~~~l~~~~~~~-~~~vr~  274 (852)
T 4fdd_A          202 IISRTQ-----ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLL-PHMHNIVEYMLQRTQDQ-DENVAL  274 (852)
T ss_dssp             TTTTCH-----HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHG-GGHHHHHHHHHHHHTCS-SHHHHH
T ss_pred             HhcccH-----HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHH-HHHHHHHHHHHHHccCC-cHHHHH
Confidence            754332     11011235788899999889999999999999999876321111 11146788888888887 788999


Q ss_pred             HHHHHHHHhcCCcchHH-------HHH-------------------H--------------------------------c
Q 015939          241 AILSILITLSVYRSVKA-------QLV-------------------E--------------------------------L  262 (398)
Q Consensus       241 ~a~~aL~~Ls~~~~~~~-------~~v-------------------~--------------------------------~  262 (398)
                      .|+.++..++.....+.       .++                   +                                .
T Consensus       275 ~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~~  354 (852)
T 4fdd_A          275 EACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYRD  354 (852)
T ss_dssp             HHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhccH
Confidence            99988888864321111       000                   0                                0


Q ss_pred             ----CChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHH-HHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhcc
Q 015939          263 ----GMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEG-RLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCV  337 (398)
Q Consensus       263 ----g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~-~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~  337 (398)
                          ..++.+.+++.  +++..+++.|+.+|.+++..... .....  .+.++.++..+.+.++.++..|+.+|.+++..
T Consensus       355 ~~~~~l~~~l~~~l~--~~~~~~R~aa~~alg~i~~~~~~~~~~~l--~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~  430 (852)
T 4fdd_A          355 ELLPHILPLLKELLF--HHEWVVKESGILVLGAIAEGCMQGMIPYL--PELIPHLIQCLSDKKALVRSITCWTLSRYAHW  430 (852)
T ss_dssp             GGHHHHHHHHHHHHT--CSSHHHHHHHHHHHHHTTTTTHHHHGGGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHH
T ss_pred             HHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhcchHHHHHHH--HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence                12333444442  35778888888888888874332 22222  36788899999889999999999999998853


Q ss_pred             CCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          338 YKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       338 ~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      .+...  ....-.++++.|+..|+.+ ++.+|+.|...|..+.+
T Consensus       431 ~~~~~--~~~~~~~ll~~L~~~L~d~-~~~vr~~a~~aL~~l~~  471 (852)
T 4fdd_A          431 VVSQP--PDTYLKPLMTELLKRILDS-NKRVQEAACSAFATLEE  471 (852)
T ss_dssp             HHHSC--TTTTHHHHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred             hccch--HHHHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHH
Confidence            21000  0111135677788888765 78999999999998876

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.90  E-value=7.4e-10  Score=104.32  Aligned_cols=51  Identities=22%  Similarity=0.241  Sum_probs=45.4

Q ss_pred             CcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCC
Q 015939           12 NLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKE   62 (398)
Q Consensus        12 ~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~   62 (398)
                      .+..||||.+.+.+||+++|||+||..||.+|+..+...||.||.++....
T Consensus       331 ~~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~~  381 (389)
T 2y1n_A          331 TFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE  381 (389)
T ss_dssp             SSSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEEE
T ss_pred             CCCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCce
Confidence            347899999999999999999999999999999855778999999887543

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=98.87  E-value=2.6e-08  Score=103.00  Aligned_cols=195  Identities=15%  Similarity=0.153  Sum_probs=142.4

Q ss_pred             cHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHH-HHHHHhcCChhhHHHHHHHHHHhhcC
Q 015939          131 FVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPL-FLEILREGNLDSKIGSIKILDSISLD  209 (398)
Q Consensus       131 ~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~-Lv~lL~~~~~~~~~~a~~~L~~L~~~  209 (398)
                      .+.+++..|++ .+++.+  ..|+.+|.+|+.+..    .++. +...+++.. +..+|...+.++|..|+++|++|+.+
T Consensus        35 ~i~Pll~~L~S-~~~~~r--~~A~~al~~l~~~~~----~~~l-~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~  106 (684)
T 4gmo_A           35 KILPVLKDLKS-PDAKSR--TTAAGAIANIVQDAK----CRKL-LLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQE  106 (684)
T ss_dssp             TTHHHHHHHSS-SCCSHH--HHHHHHHHHHTTSHH----HHHH-HHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHcCC-CCHHHH--HHHHHHHHHHHcCcH----HHHH-HHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            35567788888 665544  999999999997543    3566 556666655 55678888999999999999999876


Q ss_pred             --chhHHHhhchhhHHHHHHHHhcccc-------------C-------HHHHHHHHHHHHHhcCCc-chHHHHHHcCChH
Q 015939          210 --NESKRRVLETENLLSALFDYLKLAE-------------D-------QALNDAILSILITLSVYR-SVKAQLVELGMVQ  266 (398)
Q Consensus       210 --~~~~~~i~~~~g~i~~Lv~lL~~~~-------------~-------~~~~~~a~~aL~~Ls~~~-~~~~~~v~~g~v~  266 (398)
                        .+.+..+.. .|++++|..+|+...             .       .+....++.+|++||... +....+...|+++
T Consensus       107 ~g~d~~~~l~~-~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~  185 (684)
T 4gmo_A          107 EEADFCVHLYR-LDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTIL  185 (684)
T ss_dssp             SCHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHH
T ss_pred             cCchHHHHHHH-cChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHH
Confidence              467777887 899999999986420             0       124456888999998654 4566777899999


Q ss_pred             HHHHHhcccC-cchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHH--HHHHHHhccChhHHHHHHHHHHHhh
Q 015939          267 ILTRILSDSR-TQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAG--RVVERVMKVGKTAREDAVVVIWSMC  335 (398)
Q Consensus       267 ~Lv~lL~~~~-~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~--~Lv~~l~~~~~~~~~~a~~~L~~l~  335 (398)
                      .|+..|.+.+ ...++...|+.+|..|+. +++..+.+..+ |...  .++..+...+...+..++.+|+|+.
T Consensus       186 ~l~~~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~-~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          186 RLLFRLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDD-QETHVYDVLLKLATGTDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HHHHHHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTC-CSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhc-chHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence            9999985322 245799999999999998 56667777743 4332  2222234456666788999999975

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=98.84  E-value=5e-08  Score=103.43  Aligned_cols=269  Identities=11%  Similarity=0.040  Sum_probs=176.4

Q ss_pred             HHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhh-hhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc
Q 015939           87 VRVWIEKIKSENESENSCVDYLVKVAKFATGCEANR-RFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG  165 (398)
Q Consensus        87 i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r-~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~  165 (398)
                      ++.++..+.+++.  +.+..|++.|..++...+..- ..+.   +.++.++.++++ .  +..++..|+..+..++....
T Consensus       217 l~~l~~~~~d~~~--~vr~~a~~~L~~l~~~~~~~~~~~l~---~l~~~l~~~~~~-~--~~~vr~~a~e~l~~l~~~~~  288 (852)
T 4fdd_A          217 IENLFALAGDEEP--EVRKNVCRALVMLLEVRMDRLLPHMH---NIVEYMLQRTQD-Q--DENVALEACEFWLTLAEQPI  288 (852)
T ss_dssp             HHHHHHHHTCCCH--HHHHHHHHHHHHHHHHCHHHHGGGHH---HHHHHHHHHHTC-S--SHHHHHHHHHHHHHHTTSTT
T ss_pred             HHHHHHHcCCCCH--HHHHHHHHHHHHHHHhCHHHHHHHHH---HHHHHHHHHccC-C--cHHHHHHHHHHHHHHhcchh
Confidence            3444444444433  477889999999887655432 2222   567777777766 3  35577999999988876432


Q ss_pred             hHHHhhHhhhc--cCCChHHHHHHH-----------hc-----------CChhhHHHHHHHHHHhhcCchhHHHhhchhh
Q 015939          166 VKEKLNRLILN--TYNCLPLFLEIL-----------RE-----------GNLDSKIGSIKILDSISLDNESKRRVLETEN  221 (398)
Q Consensus       166 ~~~~~~~~il~--~~g~i~~Lv~lL-----------~~-----------~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g  221 (398)
                      .    +.. +.  -...+|.++..+           ..           .+..+|..|+.+|..|+....  ..+.  ..
T Consensus       289 ~----~~~-~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~--~~  359 (852)
T 4fdd_A          289 C----KDV-LVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELL--PH  359 (852)
T ss_dssp             H----HHH-HTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGH--HH
T ss_pred             H----HHH-HHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHH--HH
Confidence            2    222 21  123456666665           22           233568889999999987632  2222  45


Q ss_pred             HHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHH--H
Q 015939          222 LLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEG--R  299 (398)
Q Consensus       222 ~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~--~  299 (398)
                      +++.+..++.+. ++..+.+|+.+|.+++........-.-.+.++.++.++.  ++++.++..|+++|.+++..-..  .
T Consensus       360 l~~~l~~~l~~~-~~~~R~aa~~alg~i~~~~~~~~~~~l~~~l~~l~~~l~--d~~~~Vr~~a~~~l~~l~~~~~~~~~  436 (852)
T 4fdd_A          360 ILPLLKELLFHH-EWVVKESGILVLGAIAEGCMQGMIPYLPELIPHLIQCLS--DKKALVRSITCWTLSRYAHWVVSQPP  436 (852)
T ss_dssp             HHHHHHHHHTCS-SHHHHHHHHHHHHHTTTTTHHHHGGGHHHHHHHHHHHTT--CSSHHHHHHHHHHHHHTHHHHHHSCT
T ss_pred             HHHHHHHHhcCC-CHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHhccchH
Confidence            788888889887 899999999999999876543221123457899999994  47899999999999999863211  1


Q ss_pred             HHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHH
Q 015939          300 LALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVL  379 (398)
Q Consensus       300 ~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l  379 (398)
                      ....  .+.++.|++.+.+.++.+++.|+.+|.+++...+ ......  -.+.++.|+..++.. .......+...+..+
T Consensus       437 ~~~~--~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~-~~l~~~--l~~ll~~L~~~l~~~-~~~~~~~~~~ai~~l  510 (852)
T 4fdd_A          437 DTYL--KPLMTELLKRILDSNKRVQEAACSAFATLEEEAC-TELVPY--LAYILDTLVFAFSKY-QHKNLLILYDAIGTL  510 (852)
T ss_dssp             TTTH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHG-GGGGGG--HHHHHHHHHHHHHHC-CHHHHHHHHHHHHHH
T ss_pred             HHHH--HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh-HhhHhH--HHHHHHHHHHHHHHh-ChHHHHHHHHHHHHH
Confidence            1112  2578888888888899999999999999986533 222221  145677777777765 444444455555555


Q ss_pred             hc
Q 015939          380 GK  381 (398)
Q Consensus       380 ~~  381 (398)
                      .+
T Consensus       511 ~~  512 (852)
T 4fdd_A          511 AD  512 (852)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.82  E-value=6.5e-10  Score=90.22  Aligned_cols=55  Identities=24%  Similarity=0.455  Sum_probs=48.9

Q ss_pred             CCcccccCccccCCCc-------eecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCccc
Q 015939           11 PNLFRCPISLDVMKSP-------VSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPN   66 (398)
Q Consensus        11 ~~~~~Cpi~~~~~~dP-------v~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n   66 (398)
                      ++.+.||||.+.+.+|       ++++|||+||..||.+|+.. ..+||.|+..+...++.++
T Consensus        70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~~~~~~  131 (133)
T 4ap4_A           70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINHKRYHPI  131 (133)
T ss_dssp             SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCGGGEEEE
T ss_pred             CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCChhcceee
Confidence            4678899999999998       99999999999999999986 5699999999988777664

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.79  E-value=5.5e-08  Score=94.97  Aligned_cols=278  Identities=11%  Similarity=0.055  Sum_probs=182.3

Q ss_pred             HHHHHHHHHHHcC--CCCchhHHHHHHHHHHHhhhh-hhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhh
Q 015939           85 QEVRVWIEKIKSE--NESENSCVDYLVKVAKFATGC-EANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIV  161 (398)
Q Consensus        85 ~~i~~l~~~l~~~--~~~~~~~~~al~~L~~l~~~~-~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~  161 (398)
                      +-++.++..+.++  +.  ..+..++..|..++... +..-....  +..++.++.+|.+ ..++..++..|+.++.++.
T Consensus       128 ~ll~~L~~~l~~~~~~~--~~r~~al~~l~~l~~~~~~~~~~~~~--~~ll~~l~~~l~~-~~~~~~vr~~a~~~l~~~~  202 (462)
T 1ibr_B          128 ELIPQLVANVTNPNSTE--HMKESTLEAIGYICQDIDPEQLQDKS--NEILTAIIQGMRK-EEPSNNVKLAATNALLNSL  202 (462)
T ss_dssp             THHHHHHHHHHCTTCCH--HHHHHHHHHHHHHHHHSCGGGTGGGH--HHHHHHHHHHHST-TCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccCCCCH--HHHHHHHHHHHHHHHhCCchhhHhHH--HHHHHHHHHHhCC-CCCCHHHHHHHHHHHHHHH
Confidence            4677888888876  43  37778999999988653 22111111  1467778888876 3224567799999998865


Q ss_pred             cccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCch--hHHHhhchh-hHHHHHHHHhccccCHHH
Q 015939          162 NENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNE--SKRRVLETE-NLLSALFDYLKLAEDQAL  238 (398)
Q Consensus       162 ~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~--~~~~i~~~~-g~i~~Lv~lL~~~~~~~~  238 (398)
                      ..-.+...  .. ....-.++.+...+.+.+.++|..++.+|..++....  ....+   . ++++.++..+++. ++++
T Consensus       203 ~~~~~~~~--~~-~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~---~~~l~~~~~~~~~~~-~~~v  275 (462)
T 1ibr_B          203 EFTKANFD--KE-SERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM---GPALFAITIEAMKSD-IDEV  275 (462)
T ss_dssp             TTTHHHHT--SH-HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT---TTTHHHHHHHHHHCS-SHHH
T ss_pred             HHHHHhhh--hh-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHcCC-chHH
Confidence            32221100  00 0001136666677777789999999999999886532  12222   3 6788888888777 8889


Q ss_pred             HHHHHHHHHHhcCCcchH------------------HHHHH---cCChHHHHHHhccc-----CcchhhHHHHHHHHHHH
Q 015939          239 NDAILSILITLSVYRSVK------------------AQLVE---LGMVQILTRILSDS-----RTQILTVEKSIKMLSIV  292 (398)
Q Consensus       239 ~~~a~~aL~~Ls~~~~~~------------------~~~v~---~g~v~~Lv~lL~~~-----~~~~~~~~~al~~L~~L  292 (398)
                      +..++.++..++......                  ..+++   ...+|.+++.|...     +.+..++..|..+|..|
T Consensus       276 ~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l  355 (462)
T 1ibr_B          276 ALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLL  355 (462)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHH
Confidence            999999998887542100                  00111   23567777777431     12346788899999888


Q ss_pred             hCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHH
Q 015939          293 ATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMC  372 (398)
Q Consensus       293 a~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A  372 (398)
                      +..-.  ..+.  ...++.+...+.+.+...++.|+.+|..++.... ++.....+ ..+++.++..|+.. ++.+|..|
T Consensus       356 ~~~~~--~~~~--~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~-~~~~~~~l-~~~~~~l~~~l~d~-~~~Vr~~a  428 (462)
T 1ibr_B          356 ATCCE--DDIV--PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE-PSQLKPLV-IQAMPTLIELMKDP-SVVVRDTA  428 (462)
T ss_dssp             HHHTT--TTHH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC-TTTTCTTT-TTHHHHHHHGGGCS-CHHHHHHH
T ss_pred             HHhcc--HHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCc-HHHHHHHH-HHHHHHHHHHhcCC-CHHHHHHH
Confidence            76221  2333  2466777777777899999999999999996432 12111111 56788888888766 79999999


Q ss_pred             HHHHHHHhc
Q 015939          373 GDLVKVLGK  381 (398)
Q Consensus       373 ~~lL~~l~~  381 (398)
                      +++|..+.+
T Consensus       429 ~~~l~~~~~  437 (462)
T 1ibr_B          429 AWTVGRICE  437 (462)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999988

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.77  E-value=4e-09  Score=77.67  Aligned_cols=49  Identities=14%  Similarity=0.304  Sum_probs=40.7

Q ss_pred             CcccccCccccCCC--------------ceecC-CCcccchhHHHHHHhcCCCCCCcccccCCCC
Q 015939           12 NLFRCPISLDVMKS--------------PVSLC-TGVTYDRSSIQHWLESGHDTCPATMQILSTK   61 (398)
Q Consensus        12 ~~~~Cpi~~~~~~d--------------Pv~~~-~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~   61 (398)
                      ++-.|+||++.|.+              +++++ |||.|.+.||.+|+.. ..+||.||.++...
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~~~   77 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWVVQ   77 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCCEE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcchh
Confidence            45679999999988              55554 9999999999999986 56899999887643

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.76  E-value=5.5e-10  Score=81.73  Aligned_cols=52  Identities=13%  Similarity=0.131  Sum_probs=44.4

Q ss_pred             ccccCCCCcccccCccccCCCceecCCCcc-cchhHHHHHHhcCCCCCCcccccCCCC
Q 015939            5 ELYIAVPNLFRCPISLDVMKSPVSLCTGVT-YDRSSIQHWLESGHDTCPATMQILSTK   61 (398)
Q Consensus         5 ~~~~~~~~~~~Cpi~~~~~~dPv~~~~g~~-~~r~~i~~~~~~~~~~CP~~~~~l~~~   61 (398)
                      +....+.++..|+||.+.+.|||+++|||. ||+.|+.+|+     .||.||.++...
T Consensus        10 ~~~~~l~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~-----~CP~Cr~~i~~~   62 (79)
T 2yho_A           10 EKLRKLKEAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ-----SCPVCRSRVEHV   62 (79)
T ss_dssp             HHHHHHHHHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS-----BCTTTCCBCCEE
T ss_pred             HHHHcCCCCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC-----cCCCCCchhhCe
Confidence            344456677899999999999999999999 9999999874     899999987743

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.75  E-value=3.4e-07  Score=92.21  Aligned_cols=251  Identities=8%  Similarity=0.010  Sum_probs=167.0

Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCCh
Q 015939          102 NSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCL  181 (398)
Q Consensus       102 ~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i  181 (398)
                      ..+..|...|..++...+..  .+. . ..++.+..+..+ .  +...+..|+.+|..+.......  .+      ...+
T Consensus       102 ~vR~~a~~~L~~l~~~~~~~--~~~-~-~l~~~l~~l~~~-~--~~~~R~~a~~~l~~~~~~~~~~--~~------~~l~  166 (588)
T 1b3u_A          102 VVRDKAVESLRAISHEHSPS--DLE-A-HFVPLVKRLAGG-D--WFTSRTSACGLFSVCYPRVSSA--VK------AELR  166 (588)
T ss_dssp             HHHHHHHHHHHHHHTTSCHH--HHH-H-THHHHHHHHHTC-S--SHHHHHHHGGGHHHHTTTSCHH--HH------HHHH
T ss_pred             HHHHHHHHHHHHHHHHCCHH--HHH-H-HHHHHHHHHhcC-C--CcHHHHHHHHHHHHHHHhcCHH--HH------HHHH
Confidence            47788888888888654321  122 1 345666565554 2  3455688888888777544321  12      2457


Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHH
Q 015939          182 PLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVE  261 (398)
Q Consensus       182 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~  261 (398)
                      +.+..++++.++.+|..|+.+|..++..-.....  . ...++.|..+++++ ++.++..|+.+|..++......  ...
T Consensus       167 ~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~~~--~-~~l~~~l~~~~~d~-~~~vr~~a~~~l~~l~~~~~~~--~~~  240 (588)
T 1b3u_A          167 QYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNV--K-SEIIPMFSNLASDE-QDSVRLLAVEACVNIAQLLPQE--DLE  240 (588)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHH--H-HTHHHHHHHHHTCS-CHHHHTTHHHHHHHHHHHSCHH--HHH
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHhcHHhH--H-HHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHHhCCHH--HHH
Confidence            8888888888999999999999999876322221  2 56889999999888 8889999999999987532211  122


Q ss_pred             cCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCCh
Q 015939          262 LGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDA  341 (398)
Q Consensus       262 ~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~  341 (398)
                      ...++.+..++.  +.+..++..++.+|..++..-.. ..+.  ...++.++.++.+.++.++..|+..|..++...+. 
T Consensus       241 ~~~~~~l~~~~~--d~~~~vR~~a~~~l~~l~~~~~~-~~~~--~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-  314 (588)
T 1b3u_A          241 ALVMPTLRQAAE--DKSWRVRYMVADKFTELQKAVGP-EITK--TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSA-  314 (588)
T ss_dssp             HHTHHHHHHHHT--CSSHHHHHHHHHTHHHHHHHHCH-HHHH--HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCT-
T ss_pred             HHHHHHHHHHcc--CCCHHHHHHHHHHHHHHHHHhCc-ccch--hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhCh-
Confidence            347888888884  46788999999999998762211 1122  35788999999999999999999999998875432 


Q ss_pred             hHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Q 015939          342 RVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLG  380 (398)
Q Consensus       342 ~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~  380 (398)
                      +.+....-...++.+..+++.. +..+|..+...|..+.
T Consensus       315 ~~~~~~~~~~l~p~l~~~l~d~-~~~vR~~a~~~l~~l~  352 (588)
T 1b3u_A          315 DCRENVIMSQILPCIKELVSDA-NQHVKSALASVIMGLS  352 (588)
T ss_dssp             TTHHHHHHHTHHHHHHHHHTCS-CHHHHHHHHTTGGGGH
T ss_pred             hhhhhHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHH
Confidence            2111112233455555555443 5666666655554443

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.74  E-value=1.4e-09  Score=82.57  Aligned_cols=46  Identities=13%  Similarity=0.236  Sum_probs=39.3

Q ss_pred             CcccccCccccCCCceec---CCCcccchhHHHHHHh----cCC---CCCCc--cccc
Q 015939           12 NLFRCPISLDVMKSPVSL---CTGVTYDRSSIQHWLE----SGH---DTCPA--TMQI   57 (398)
Q Consensus        12 ~~~~Cpi~~~~~~dPv~~---~~g~~~~r~~i~~~~~----~~~---~~CP~--~~~~   57 (398)
                      +.|.||||.+.+.+|+++   +|||+||+.|+.++|.    +|.   ..||.  |+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            578999999999999886   6999999999999985    232   36999  9877

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=98.71  E-value=8.1e-07  Score=89.43  Aligned_cols=222  Identities=12%  Similarity=0.054  Sum_probs=136.2

Q ss_pred             HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc
Q 015939           86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG  165 (398)
Q Consensus        86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~  165 (398)
                      .+..++..|.+++..  .+..|+..|..++..-... ...  . ..++.|...+    +.+..++..+...|..+...-.
T Consensus        11 ~i~~l~~~l~s~~~~--~R~~A~~~l~~i~~~~~~~-~~~--~-~l~~~L~~~~----d~~~~vr~~~~~~L~~~~~~~~   80 (588)
T 1b3u_A           11 PIAVLIDELRNEDVQ--LRLNSIKKLSTIALALGVE-RTR--S-ELLPFLTDTI----YDEDEVLLALAEQLGTFTTLVG   80 (588)
T ss_dssp             HHHHHHHHTTCSCHH--HHHHHHHTHHHHHHHSCHH-HHH--H-THHHHHHHTC----CCCHHHHHHHHHHHTTCSGGGT
T ss_pred             cHHHHHHHhhcccHH--HHHHHHHhHHHHHHHhCHH-HHH--H-HHHHHHHHhc----CCcHHHHHHHHHHHHHHHhccC
Confidence            467788888887754  7888888887766421111 011  1 3455554443    3345677888888887764321


Q ss_pred             hHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHH
Q 015939          166 VKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSI  245 (398)
Q Consensus       166 ~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~a  245 (398)
                      ..    .   .....++.|..++.+.+..+|..|+.+|..++..-.. ..+ . ...++.+..+..++ +...+..++.+
T Consensus        81 ~~----~---~~~~ll~~L~~l~~~~~~~vR~~a~~~L~~l~~~~~~-~~~-~-~~l~~~l~~l~~~~-~~~~R~~a~~~  149 (588)
T 1b3u_A           81 GP----E---YVHCLLPPLESLATVEETVVRDKAVESLRAISHEHSP-SDL-E-AHFVPLVKRLAGGD-WFTSRTSACGL  149 (588)
T ss_dssp             SG----G---GGGGGHHHHHHHTTSSCHHHHHHHHHHHHHHHTTSCH-HHH-H-HTHHHHHHHHHTCS-SHHHHHHHGGG
T ss_pred             cH----H---HHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHCCH-HHH-H-HHHHHHHHHHhcCC-CcHHHHHHHHH
Confidence            10    1   1234677777777778899999999999999876221 111 1 23455555666555 67777888887


Q ss_pred             HHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHH
Q 015939          246 LITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTARE  325 (398)
Q Consensus       246 L~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~  325 (398)
                      |..+...-...   .....++.+..++.  ++++.++..|+.+|..++..-... ...  ...++.+..++.+.++.++.
T Consensus       150 l~~~~~~~~~~---~~~~l~~~l~~l~~--d~~~~VR~~a~~~l~~l~~~~~~~-~~~--~~l~~~l~~~~~d~~~~vr~  221 (588)
T 1b3u_A          150 FSVCYPRVSSA---VKAELRQYFRNLCS--DDTPMVRRAAASKLGEFAKVLELD-NVK--SEIIPMFSNLASDEQDSVRL  221 (588)
T ss_dssp             HHHHTTTSCHH---HHHHHHHHHHHHHT--CSCHHHHHHHHHHHHHHHHTSCHH-HHH--HTHHHHHHHHHTCSCHHHHT
T ss_pred             HHHHHHhcCHH---HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHhcHH-hHH--HHHHHHHHHHhcCCcHHHHH
Confidence            77776543321   12235666777773  467788888888888776521111 111  24666777777667777777


Q ss_pred             HHHHHHHHhhc
Q 015939          326 DAVVVIWSMCC  336 (398)
Q Consensus       326 ~a~~~L~~l~~  336 (398)
                      .|+.+|..++.
T Consensus       222 ~a~~~l~~l~~  232 (588)
T 1b3u_A          222 LAVEACVNIAQ  232 (588)
T ss_dssp             THHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            77777766654

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.71  E-value=6.4e-09  Score=72.74  Aligned_cols=48  Identities=17%  Similarity=0.173  Sum_probs=42.5

Q ss_pred             CCcccccCccccCCCceec--CCCcc-cchhHHHHHHhcCCCCCCcccccCC
Q 015939           11 PNLFRCPISLDVMKSPVSL--CTGVT-YDRSSIQHWLESGHDTCPATMQILS   59 (398)
Q Consensus        11 ~~~~~Cpi~~~~~~dPv~~--~~g~~-~~r~~i~~~~~~~~~~CP~~~~~l~   59 (398)
                      +++..|+||.+-++|+|++  +|||. ||..|+.+|+.. ...||.||+++.
T Consensus         6 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~   56 (64)
T 2vje_A            6 NAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKR-NKPCPVCRQPIQ   56 (64)
T ss_dssp             GGGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHT-TCCCTTTCCCCC
T ss_pred             CCcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHc-CCcCCCcCcchh
Confidence            3566899999999999988  99999 899999999975 568999999875

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.69  E-value=7e-09  Score=72.31  Aligned_cols=47  Identities=13%  Similarity=0.139  Sum_probs=41.8

Q ss_pred             CcccccCccccCCCceec--CCCcc-cchhHHHHHHhcCCCCCCcccccCC
Q 015939           12 NLFRCPISLDVMKSPVSL--CTGVT-YDRSSIQHWLESGHDTCPATMQILS   59 (398)
Q Consensus        12 ~~~~Cpi~~~~~~dPv~~--~~g~~-~~r~~i~~~~~~~~~~CP~~~~~l~   59 (398)
                      .+..|+||.+-++||+++  +|||. ||..|+.+|+.. ...||.||+++.
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~   55 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQ   55 (63)
T ss_dssp             GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCC
T ss_pred             cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhh
Confidence            356799999999999998  99998 999999999875 478999999875

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.65  E-value=2.3e-09  Score=100.54  Aligned_cols=48  Identities=17%  Similarity=0.205  Sum_probs=42.6

Q ss_pred             cCCCCcccccCccccCCCceecCCCcc-cchhHHHHHHhcCCCCCCcccccCCC
Q 015939            8 IAVPNLFRCPISLDVMKSPVSLCTGVT-YDRSSIQHWLESGHDTCPATMQILST   60 (398)
Q Consensus         8 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~-~~r~~i~~~~~~~~~~CP~~~~~l~~   60 (398)
                      ..+.+++.||||.+.+.+||+++|||+ ||+.|+.+|     ..||.||.++..
T Consensus       290 ~~l~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~  338 (345)
T 3t6p_A          290 RRLQEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKG  338 (345)
T ss_dssp             HHHHTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCE
T ss_pred             HhCcCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccC
Confidence            345577899999999999999999999 999999988     579999998764

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.63  E-value=2.4e-08  Score=70.60  Aligned_cols=48  Identities=17%  Similarity=0.149  Sum_probs=41.6

Q ss_pred             cCCCCcccccCccccCCCceecCCCcc-cchhHHHHHHhcCCCCCCcccccCCC
Q 015939            8 IAVPNLFRCPISLDVMKSPVSLCTGVT-YDRSSIQHWLESGHDTCPATMQILST   60 (398)
Q Consensus         8 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~-~~r~~i~~~~~~~~~~CP~~~~~l~~   60 (398)
                      ..-.++..|+||.+-..|||++||||. ||..|+.+     ...||.||+++..
T Consensus        10 ~~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~   58 (68)
T 2ea5_A           10 PSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQE   58 (68)
T ss_dssp             CSCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCC
T ss_pred             ccCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhc
Confidence            344567899999999999999999999 99999984     4689999998764

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=98.59  E-value=3.4e-08  Score=76.28  Aligned_cols=46  Identities=15%  Similarity=0.328  Sum_probs=39.9

Q ss_pred             cccccCccccCCCc------------------eecCCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939           13 LFRCPISLDVMKSP------------------VSLCTGVTYDRSSIQHWLESGHDTCPATMQILS   59 (398)
Q Consensus        13 ~~~Cpi~~~~~~dP------------------v~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~   59 (398)
                      +-.|+||++.|.+|                  ++++|||.|.+.||.+|+.. +.+||.||+.+.
T Consensus        37 ~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~~  100 (106)
T 3dpl_R           37 VDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE  100 (106)
T ss_dssp             SCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred             CCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcce
Confidence            44799999999987                  44789999999999999975 678999998864

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.54  E-value=1.2e-05  Score=81.55  Aligned_cols=260  Identities=14%  Similarity=0.109  Sum_probs=163.1

Q ss_pred             HHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHH
Q 015939           89 VWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKE  168 (398)
Q Consensus        89 ~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~  168 (398)
                      .+.+.+.+.+.  ..+..|+.++..+...+++   .+.+. +.++.|..+|.+ .  +..++..|+.+|..++..++.  
T Consensus       125 ~l~~~L~d~~~--~VRk~A~~al~~i~~~~p~---~~~~~-~~~~~l~~lL~d-~--d~~V~~~A~~aL~~i~~~~~~--  193 (591)
T 2vgl_B          125 PLRKCLKDEDP--YVRKTAAVCVAKLHDINAQ---MVEDQ-GFLDSLRDLIAD-S--NPMVVANAVAALSEISESHPN--  193 (591)
T ss_dssp             HHHHHSSCSCH--HHHHHHHHHHHHHHHSSCC---CHHHH-HHHHHHHHTTSC-S--CHHHHHHHHHHHHHHTTSCCS--
T ss_pred             HHHHHcCCCCh--HHHHHHHHHHHHHHhhChh---hcccc-cHHHHHHHHhCC-C--ChhHHHHHHHHHHHHHhhCCC--
Confidence            34455554443  3788899999998876544   33334 788999999976 3  456779999999999876543  


Q ss_pred             HhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHH
Q 015939          169 KLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILIT  248 (398)
Q Consensus       169 ~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~  248 (398)
                        ...+-...+.+..|+..|...++-.+.....+|..+...++.  .   ....++.+..+|++. ++.++..|++++..
T Consensus       194 --~~~~~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~--~---~~~~l~~l~~~l~~~-~~~V~~ea~~~i~~  265 (591)
T 2vgl_B          194 --SNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDR--E---AQSICERVTPRLSHA-NSAVVLSAVKVLMK  265 (591)
T ss_dssp             --CCSCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHH--H---HHHHHHHHTTCSCSS-TTHHHHHHHHHHHH
T ss_pred             --ccchhccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChH--H---HHHHHHHHHHHHcCC-ChHHHHHHHHHHHH
Confidence              001011234577888888888888888777777777644321  1   146788888889887 88899999999999


Q ss_pred             hcC----CcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-C------------------HHHHHHHh--
Q 015939          249 LSV----YRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-C------------------SEGRLALS--  303 (398)
Q Consensus       249 Ls~----~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~------------------~~~~~~i~--  303 (398)
                      +..    +++....++ ..+++.|+.++.   +++.++..++..|..+.. +                  ...|....  
T Consensus       266 l~~~~~~~~~~~~~~~-~~~~~~L~~L~~---~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~  341 (591)
T 2vgl_B          266 FLELLPKDSDYYNMLL-KKLAPPLVTLLS---GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDI  341 (591)
T ss_dssp             SCCSCCBTTBSHHHHH-HHTHHHHHHHTT---SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHH
T ss_pred             HhhccCCCHHHHHHHH-HHHHHHHHHHhc---CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHH
Confidence            874    233333333 335677776653   467777777777777653 1                  11111111  


Q ss_pred             ----hccC----cHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHH
Q 015939          304 ----EEAS----CAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDL  375 (398)
Q Consensus       304 ----~~~g----~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~l  375 (398)
                          .+..    .++.|..++.+.+...+..++..+..++...  +...     ...++.|+.+++.. +..++..+...
T Consensus       342 L~~l~~~~nv~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~--~~~~-----~~~v~~Ll~ll~~~-~~~v~~e~i~~  413 (591)
T 2vgl_B          342 MIRLASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKV--EQSA-----ERCVSTLLDLIQTK-VNYVVQEAIVV  413 (591)
T ss_dssp             HHHTCCSSTHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC--HHHH-----HHHHHHHHHHHHTC-CHHHHHHHHHH
T ss_pred             HHHHCChhhHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--hhHH-----HHHHHHHHHHHccc-chHHHHHHHHH
Confidence                0122    2334445555678889999999998888643  1111     23456666666655 34444444444


Q ss_pred             HHHH
Q 015939          376 VKVL  379 (398)
Q Consensus       376 L~~l  379 (398)
                      ++.+
T Consensus       414 l~~i  417 (591)
T 2vgl_B          414 IRDI  417 (591)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            4443

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=98.53  E-value=6.4e-07  Score=91.02  Aligned_cols=231  Identities=13%  Similarity=0.024  Sum_probs=154.6

Q ss_pred             CcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC
Q 015939          130 GFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD  209 (398)
Q Consensus       130 g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~  209 (398)
                      ..++.+..+|.+ .  ++.++..|+.++..+....++      . +.+.++++.|..+|.+.++.++..|+.+|..++.+
T Consensus       121 ~l~~~l~~~L~d-~--~~~VRk~A~~al~~i~~~~p~------~-~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~  190 (591)
T 2vgl_B          121 YLCEPLRKCLKD-E--DPYVRKTAAVCVAKLHDINAQ------M-VEDQGFLDSLRDLIADSNPMVVANAVAALSEISES  190 (591)
T ss_dssp             HHHHHHHHHSSC-S--CHHHHHHHHHHHHHHHHSSCC------C-HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHcCC-C--ChHHHHHHHHHHHHHHhhChh------h-cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhh
Confidence            345667777776 3  456779999999998875443      1 22347889999999988999999999999999887


Q ss_pred             chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHH
Q 015939          210 NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKML  289 (398)
Q Consensus       210 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L  289 (398)
                      ......+.-..+.+..|+..|.+. ++-.+...+++|..++..++.-    ....++.+..+++  +.++.++..|+.++
T Consensus       191 ~~~~~~~~l~~~~~~~Ll~~l~~~-~~~~q~~il~~l~~l~~~~~~~----~~~~l~~l~~~l~--~~~~~V~~ea~~~i  263 (591)
T 2vgl_B          191 HPNSNLLDLNPQNINKLLTALNEC-TEWGQIFILDCLSNYNPKDDRE----AQSICERVTPRLS--HANSAVVLSAVKVL  263 (591)
T ss_dssp             CCSCCSCCCHHHHHHHHHHHHHHC-CHHHHHHHHHHHHTSCCCSHHH----HHHHHHHHTTCSC--SSTTHHHHHHHHHH
T ss_pred             CCCccchhccHHHHHHHHHcCCCC-CchHHHHHHHHHHHhCCCChHH----HHHHHHHHHHHHc--CCChHHHHHHHHHH
Confidence            432111222256788888888877 7888888889888887543311    1235677777784  46789999999999


Q ss_pred             HHHhC----CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCC----------------ChhHHHHHHh
Q 015939          290 SIVAT----CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYK----------------DARVKEAVVN  349 (398)
Q Consensus       290 ~~La~----~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~----------------~~~~~~~~~~  349 (398)
                      ..+..    +++..+.+.  ....+.|+.++ ++++.++..|+..|..+....+                +..++...++
T Consensus       264 ~~l~~~~~~~~~~~~~~~--~~~~~~L~~L~-~~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~  340 (591)
T 2vgl_B          264 MKFLELLPKDSDYYNMLL--KKLAPPLVTLL-SGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLD  340 (591)
T ss_dssp             HHSCCSCCBTTBSHHHHH--HHTHHHHHHHT-TSCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHH
T ss_pred             HHHhhccCCCHHHHHHHH--HHHHHHHHHHh-cCCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHH
Confidence            99873    344444444  24566777654 4778888888888877764321                1112222222


Q ss_pred             -------cC----CHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          350 -------SN----GLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       350 -------~g----~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                             ..    +++.|...++.. +...|+.+...+..++.
T Consensus       341 ~L~~l~~~~nv~~iv~~L~~~l~~~-d~~~r~~~v~aI~~la~  382 (591)
T 2vgl_B          341 IMIRLASQANIAQVLAELKEYATEV-DVDFVRKAVRAIGRCAI  382 (591)
T ss_dssp             HHHHTCCSSTHHHHHHHHHHHTTSS-CHHHHHHHHHHHHHHHT
T ss_pred             HHHHHCChhhHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHH
Confidence                   22    344455555444 67888888877777765

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.48  E-value=4.4e-05  Score=77.82  Aligned_cols=252  Identities=13%  Similarity=0.092  Sum_probs=155.1

Q ss_pred             HHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccch
Q 015939           87 VRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGV  166 (398)
Q Consensus        87 i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~  166 (398)
                      +..+.+.|.+++..  .+..|+..|..+...      .+.+  ..++.+..+|.+ .  ++.++..|+.++..+....++
T Consensus       109 in~l~kDL~~~n~~--vr~lAL~~L~~i~~~------~~~~--~l~~~l~~~L~~-~--~~~VRk~A~~al~~l~~~~p~  175 (618)
T 1w63_A          109 TNCIKNDLNHSTQF--VQGLALCTLGCMGSS------EMCR--DLAGEVEKLLKT-S--NSYLRKKAALCAVHVIRKVPE  175 (618)
T ss_dssp             HHHHHHHHSCSSSH--HHHHHHHHHHHHCCH------HHHH--HHHHHHHHHHHS-C--CHHHHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHhcCCCCHh--HHHHHHHHHHhcCCH------HHHH--HHHHHHHHHHcC-C--CHHHHHHHHHHHHHHHHHChH
Confidence            44566667766654  667777787777632      1222  567788888887 4  356779999999999865443


Q ss_pred             HHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCc-hhHHHhhchhhHHHHHHHHhcc-------------
Q 015939          167 KEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDN-ESKRRVLETENLLSALFDYLKL-------------  232 (398)
Q Consensus       167 ~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~~g~i~~Lv~lL~~-------------  232 (398)
                            . +  .++++.+..+|.+.++.++..|+.+|..++..+ +....+   ...++.|+.+|.+             
T Consensus       176 ------~-v--~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~~~~~---~~~v~~l~~~L~~~~~~~~~~~~~~~  243 (618)
T 1w63_A          176 ------L-M--EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDMLAHF---RKLVPQLVRILKNLIMSGYSPEHDVS  243 (618)
T ss_dssp             ------G-G--GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHHHHHH---HTTHHHHHHHHHHHHHSCCCTTTCSS
T ss_pred             ------H-H--HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHHHHHH---HHHHHHHHHHHHHHHcCCCCcccccc
Confidence                  1 1  267888889999889999999999999998763 221222   3567778877764             


Q ss_pred             -ccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcc----cCcchhhHHHHHHHHHHHhCCHHHHHHHhhccC
Q 015939          233 -AEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSD----SRTQILTVEKSIKMLSIVATCSEGRLALSEEAS  307 (398)
Q Consensus       233 -~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~----~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g  307 (398)
                       -.++-.+...+.+|..++..+...    ....++.|..++..    .+.+..++..|..++..+...+..+.      .
T Consensus       244 ~~~~~~~q~~il~~L~~l~~~~~~~----~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~~------~  313 (618)
T 1w63_A          244 GISDPFLQVRILRLLRILGRNDDDS----SEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRV------L  313 (618)
T ss_dssp             SSSCHHHHHHHHHHHHHHTTTCHHH----HHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHHH------H
T ss_pred             CCCCChHHHHHHHHHHHhCCCCHHH----HHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHHH------H
Confidence             126778888999999998654321    12244555555531    12344666677777777655433221      2


Q ss_pred             cHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          308 CAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       308 ~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      ++..|..++.+.++.++..|+..|..++...  +    .+++ .....++..+... +..+|..|..+|..+..
T Consensus       314 a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~--p----~~~~-~~~~~i~~~l~d~-d~~Ir~~alelL~~l~~  379 (618)
T 1w63_A          314 AINILGRFLLNNDKNIRYVALTSLLKTVQTD--H----NAVQ-RHRSTIVDCLKDL-DVSIKRRAMELSFALVN  379 (618)
T ss_dssp             HHHHHHHHHTCSSTTTHHHHHHHHHHHHHHH--H----HHHG-GGHHHHHHGGGSS-CHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHhCCCCchHHHHHHHHHHHHhhC--H----HHHH-HHHHHHHHHccCC-ChhHHHHHHHHHHHHcc
Confidence            4556666666667777777777776666431  1    1111 1333444444433 45555555555544443

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.42  E-value=1.9e-05  Score=83.38  Aligned_cols=278  Identities=11%  Similarity=0.075  Sum_probs=180.4

Q ss_pred             HHHHHHHHHHHcC--CCCchhHHHHHHHHHHHhhhh-hhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhh
Q 015939           85 QEVRVWIEKIKSE--NESENSCVDYLVKVAKFATGC-EANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIV  161 (398)
Q Consensus        85 ~~i~~l~~~l~~~--~~~~~~~~~al~~L~~l~~~~-~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~  161 (398)
                      +-++.++..+.++  +.  ..+..++..+..++..- +..  .-...+..++.+...+.+ .+++..++..|+.+|..+.
T Consensus       128 ~ll~~l~~~l~~~~~~~--~~r~~al~~l~~l~~~~~~~~--~~~~~~~ll~~l~~~l~~-~~~~~~vr~~a~~~l~~~~  202 (876)
T 1qgr_A          128 ELIPQLVANVTNPNSTE--HMKESTLEAIGYICQDIDPEQ--LQDKSNEILTAIIQGMRK-EEPSNNVKLAATNALLNSL  202 (876)
T ss_dssp             THHHHHHHHHHCTTCCH--HHHHHHHHHHHHHHHHSCHHH--HGGGHHHHHHHHHHHHST-TCSCHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHhCCCCCH--HHHHHHHHHHHHHHHhcCHhh--HHhHHHHHHHHHHHhhcC-CCCCHHHHHHHHHHHHHHH
Confidence            4677788888776  43  37788888998888642 111  111112456677777766 3224567789999998876


Q ss_pred             cccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCc-h-hHHHhhchhhHHHHHHHHhccccCHHHH
Q 015939          162 NENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDN-E-SKRRVLETENLLSALFDYLKLAEDQALN  239 (398)
Q Consensus       162 ~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~-~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~  239 (398)
                      ..-..+  .... ......++.+...+...+.++|..++.+|..+.... + ....+.  ..+++.++..+.+. ++.++
T Consensus       203 ~~~~~~--~~~~-~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~--~~l~~~~~~~~~~~-~~~v~  276 (876)
T 1qgr_A          203 EFTKAN--FDKE-SERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMG--PALFAITIEAMKSD-IDEVA  276 (876)
T ss_dssp             GGCHHH--HTSH-HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHT--TTHHHHHHHHHTCS-SHHHH
T ss_pred             HHHHHH--HHhH-HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHH--HHHHHHHHHHhcCC-chHHH
Confidence            432211  0000 001125777777777778999999999999888652 2 222221  26788888887776 78899


Q ss_pred             HHHHHHHHHhcCCcc----------------------hHHHHHHcCChHHHHHHhccc-----CcchhhHHHHHHHHHHH
Q 015939          240 DAILSILITLSVYRS----------------------VKAQLVELGMVQILTRILSDS-----RTQILTVEKSIKMLSIV  292 (398)
Q Consensus       240 ~~a~~aL~~Ls~~~~----------------------~~~~~v~~g~v~~Lv~lL~~~-----~~~~~~~~~al~~L~~L  292 (398)
                      ..++.++..++....                      ...... ...++.++..|...     +.+..++..|..+|..+
T Consensus       277 ~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l  355 (876)
T 1qgr_A          277 LQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGAL-QYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLL  355 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHH-HHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHH-HHHhHHHHHHhhcccccccccccHHHHHHHHHHHHH
Confidence            999999988864320                      001111 23567777887421     23457888888888888


Q ss_pred             hCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHH
Q 015939          293 ATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMC  372 (398)
Q Consensus       293 a~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A  372 (398)
                      +..-.  ..+.  ...++.+...+.+.+..+++.|+.+|..++...+ ++...... ...++.++..++.. ++.+|..|
T Consensus       356 ~~~~~--~~~~--~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~-~~~~~~~~-~~~l~~l~~~l~d~-~~~vr~~a  428 (876)
T 1qgr_A          356 ATCCE--DDIV--PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE-PSQLKPLV-IQAMPTLIELMKDP-SVVVRDTA  428 (876)
T ss_dssp             HHHHG--GGGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC-HHHHHHHH-HHHHHHHHHHHTCS-SHHHHHHH
T ss_pred             HHHCc--HhhH--HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCC-HHHHHHHH-HHHHHHHHHHhCCC-CHHHHHHH
Confidence            76322  1222  2456666666777889999999999999986532 22222222 34788888888765 78999999


Q ss_pred             HHHHHHHhc
Q 015939          373 GDLVKVLGK  381 (398)
Q Consensus       373 ~~lL~~l~~  381 (398)
                      ..+|..+.+
T Consensus       429 ~~~l~~~~~  437 (876)
T 1qgr_A          429 AWTVGRICE  437 (876)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999998887

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.39  E-value=9.6e-06  Score=70.32  Aligned_cols=184  Identities=15%  Similarity=0.146  Sum_probs=140.9

Q ss_pred             CChHHHHHHHhcCChhhHHHHHHHHHHhhcC--chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcc-h
Q 015939          179 NCLPLFLEILREGNLDSKIGSIKILDSISLD--NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRS-V  255 (398)
Q Consensus       179 g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~-~  255 (398)
                      +.+..|..+|+..|..++.++..+|..+...  +.-+..+.  ..+++.+++++++. |..+.-.|+++|..|-.+.+ .
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~--e~~Ld~iI~llk~~-dEkval~A~r~L~~LLe~vpL~  109 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVL--ERHLDVFINALSQE-NEKVTIKALRALGYLVKDVPMG  109 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHH--HHHHHHHHHTCCST-THHHHHHHHHHHHHHHTTCCBC
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHH--HHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcCCCCC
Confidence            4578899999999999999999999988776  33333333  57899999999998 88999999999999975543 3


Q ss_pred             HHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhh
Q 015939          256 KAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMC  335 (398)
Q Consensus       256 ~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~  335 (398)
                      ...+..  .+.+|.+++.  +.++-+.+++...|.-|-...     .  ..+.+..+.+++.+.+..++..|+++|.+++
T Consensus       110 ~~~y~K--l~~aL~dlik--~~~~il~~eaae~Lgklkv~~-----~--~~~V~~~l~sLl~Skd~~vK~agl~~L~eia  178 (265)
T 3b2a_A          110 SKTFLK--AAKTLVSLLE--SPDDMMRIETIDVLSKLQPLE-----D--SKLVRTYINELVVSPDLYTKVAGFCLFLNML  178 (265)
T ss_dssp             HHHHHH--HHHHHHHHTT--SCCHHHHHHHHHHHHHCCBSC-----C--CHHHHHHHHHHHTCSSHHHHHHHHHHHHHHG
T ss_pred             HHHHHH--HHHHHHHHhc--CCCchHHHHHHHHhCcCCccc-----c--hHHHHHHHHHHHhCCChhHHHHHHHHHHHhh
Confidence            333332  5678999995  478899999999999882210     0  1245556777887789999999999999999


Q ss_pred             ccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhcC
Q 015939          336 CVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGKA  382 (398)
Q Consensus       336 ~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~~  382 (398)
                      ..++|.+....+     +.-+-.+|++. ++.++++|..+|-.+..+
T Consensus       179 ~~S~D~~i~~~I-----~~eI~elL~~e-D~~l~e~aLd~Le~ils~  219 (265)
T 3b2a_A          179 NSSADSGHLTLI-----LDEIPSLLQND-NEFIVELALDVLEKALSF  219 (265)
T ss_dssp             GGCSSCCCGGGT-----TTTHHHHHTCS-CHHHHHHHHHHHHHHTTS
T ss_pred             cccCCHHHHHHH-----HHHHHHHHcCC-CHHHHHHHHHHHHHHHcC
Confidence            988776665543     34466667777 899999999888777664

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=98.36  E-value=4.4e-05  Score=77.85  Aligned_cols=250  Identities=12%  Similarity=0.107  Sum_probs=167.0

Q ss_pred             HHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccch
Q 015939           87 VRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGV  166 (398)
Q Consensus        87 i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~  166 (398)
                      ++.+.+.+.+.+..  .+..|+.++..+...+++...      +.++.+..+|.+   .+..++..|+.+|..++..+++
T Consensus       144 ~~~l~~~L~~~~~~--VRk~A~~al~~l~~~~p~~v~------~~~~~l~~lL~D---~d~~V~~~Al~~L~~i~~~~~~  212 (618)
T 1w63_A          144 AGEVEKLLKTSNSY--LRKKAALCAVHVIRKVPELME------MFLPATKNLLNE---KNHGVLHTSVVLLTEMCERSPD  212 (618)
T ss_dssp             HHHHHHHHHSCCHH--HHHHHHHHHHHHHHHCGGGGG------GGGGGTTTSTTC---CCHHHHHHHHHHHHHHCCSHHH
T ss_pred             HHHHHHHHcCCCHH--HHHHHHHHHHHHHHHChHHHH------HHHHHHHHHhCC---CCHhHHHHHHHHHHHHHHhChH
Confidence            34455556665543  788899999999877654321      456666777765   4456779999999999875443


Q ss_pred             HHHhhHhhhccCCChHHHHHHHhc---------------CChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhc
Q 015939          167 KEKLNRLILNTYNCLPLFLEILRE---------------GNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLK  231 (398)
Q Consensus       167 ~~~~~~~il~~~g~i~~Lv~lL~~---------------~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~  231 (398)
                      .   ... +  ...++.++.+|..               .++-.+...+.+|..+...+....     ...++.|..++.
T Consensus       213 ~---~~~-~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~  281 (618)
T 1w63_A          213 M---LAH-F--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVAT  281 (618)
T ss_dssp             H---HHH-H--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHH
T ss_pred             H---HHH-H--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHh
Confidence            1   112 1  2578888888864               367778888889998887632111     223344444443


Q ss_pred             ------cccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhc
Q 015939          232 ------LAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEE  305 (398)
Q Consensus       232 ------~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~  305 (398)
                            +. +..++-.+++++..+...+..    .. .++..|..+|.  +.++.++..|+..|..++...   ..++. 
T Consensus       282 ~~~~~~~~-~~aV~~ea~~~i~~l~~~~~l----~~-~a~~~L~~~L~--~~d~~vr~~aL~~L~~i~~~~---p~~~~-  349 (618)
T 1w63_A          282 NTETSKNV-GNAILYETVLTIMDIKSESGL----RV-LAINILGRFLL--NNDKNIRYVALTSLLKTVQTD---HNAVQ-  349 (618)
T ss_dssp             TSCCSSTH-HHHHHHHHHHHHHHSCCCHHH----HH-HHHHHHHHHHT--CSSTTTHHHHHHHHHHHHHHH---HHHHG-
T ss_pred             ccccccch-HHHHHHHHHHHHHhcCCCHHH----HH-HHHHHHHHHHh--CCCCchHHHHHHHHHHHHhhC---HHHHH-
Confidence                  22 457888889999887654322    22 36788888884  468899999999999888621   22331 


Q ss_pred             cCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          306 ASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       306 ~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                       .....++..+.+.+..++..|+.+|..++...    ....     ++..|+..+... +...|..+...+..++.
T Consensus       350 -~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~----nv~~-----iv~eL~~~l~~~-d~e~r~~~v~~I~~la~  414 (618)
T 1w63_A          350 -RHRSTIVDCLKDLDVSIKRRAMELSFALVNGN----NIRG-----MMKELLYFLDSC-EPEFKADCASGIFLAAE  414 (618)
T ss_dssp             -GGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSS----STHH-----HHHHHHHHHHHC-CHHHHHHHHHHHHHHHH
T ss_pred             -HHHHHHHHHccCCChhHHHHHHHHHHHHcccc----cHHH-----HHHHHHHHHHhC-CHHHHHHHHHHHHHHHH
Confidence             35667777788888999999999999998642    2222     236677777655 67888888777777765

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=98.34  E-value=8.2e-06  Score=79.40  Aligned_cols=273  Identities=9%  Similarity=-0.005  Sum_probs=171.9

Q ss_pred             HHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchH
Q 015939           88 RVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVK  167 (398)
Q Consensus        88 ~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~  167 (398)
                      ..++..+.+++.+  .+.+|-..|..+...+         .+|+...|+.++.+ .+.+..++..|...|.++.......
T Consensus         4 ~~~L~~~~s~d~~--~r~~Ae~~L~~~~~~~---------~~~~~~~L~~il~~-~~~~~~vR~~a~~~Lk~~i~~~~~~   71 (462)
T 1ibr_B            4 ITILEKTVSPDRL--ELEAAQKFLERAAVEN---------LPTFLVELSRVLAN-PGNSQVARVAAGLQIKNSLTSKDPD   71 (462)
T ss_dssp             HHHHHHTTCSCHH--HHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHCCSSHH
T ss_pred             HHHHHHhcCCCHH--HHHHHHHHHHHHHhhC---------hHHHHHHHHHHHHc-CCCChHHHHHHHHHHHHhccccchH
Confidence            3455555555543  7778888888765421         22677788888877 4445567788888888886432110


Q ss_pred             HH--hhH--hhhc---cCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhcccc-CHHHH
Q 015939          168 EK--LNR--LILN---TYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAE-DQALN  239 (398)
Q Consensus       168 ~~--~~~--~il~---~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~-~~~~~  239 (398)
                      ..  ...  ..+.   ...+-..|+..|.+.+..+ ..++.+|..++..+...   ..-.+.++.|+..+.++. ++..+
T Consensus        72 ~~~~~~~~~~~l~~~~~~~ik~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~---~~w~~ll~~L~~~l~~~~~~~~~r  147 (462)
T 1ibr_B           72 IKAQYQQRWLAIDANARREVKNYVLQTLGTETYRP-SSASQCVAGIACAEIPV---NQWPELIPQLVANVTNPNSTEHMK  147 (462)
T ss_dssp             HHHHHHHHHHTSCHHHHHHHHHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHCTTCCHHHH
T ss_pred             HHHHHHhhhhcCCHHHHHHHHHHHHHHhCCCCchh-hHHHHHHHHHHHHhccc---cccHHHHHHHHHHhccCCCCHHHH
Confidence            00  000  0010   1223455778888887778 88999999998763211   112578999999998764 67899


Q ss_pred             HHHHHHHHHhcCCc--chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCC-HHHHH-HHhhccCcHHHHHHH
Q 015939          240 DAILSILITLSVYR--SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATC-SEGRL-ALSEEASCAGRVVER  315 (398)
Q Consensus       240 ~~a~~aL~~Ls~~~--~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~-~~~~~-~i~~~~g~v~~Lv~~  315 (398)
                      ..++.+|..++..-  +.-.... ...++.++..+.+...++.++..|+.+|.++... ..... ... ..-.++.+...
T Consensus       148 ~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~-~~~l~~~l~~~  225 (462)
T 1ibr_B          148 ESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESE-RHFIMQVVCEA  225 (462)
T ss_dssp             HHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHH-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHH-HHHHHHHHHHh
Confidence            99999999997532  1111111 2367888888864212688999999999987642 21110 111 01135555566


Q ss_pred             HhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          316 VMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       316 l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      +.+.++.++..++.+|..++...+ ...... +..++++.++..++.. ++.++..|...+..+.+
T Consensus       226 ~~~~~~~vr~~~~~~l~~l~~~~~-~~~~~~-~~~~l~~~~~~~~~~~-~~~v~~~a~~~l~~~~~  288 (462)
T 1ibr_B          226 TQCPDTRVRVAALQNLVKIMSLYY-QYMETY-MGPALFAITIEAMKSD-IDEVALQGIEFWSNVCD  288 (462)
T ss_dssp             TTCSSHHHHHHHHHHHHHHHHHCG-GGCTTT-TTTTHHHHHHHHHHCS-SHHHHHHHHHHHHHHHH
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHH-HHHHHH-HHHHHHHHHHHHHcCC-chHHHHHHHHHHHHHHH
Confidence            666789999999999999886542 111111 1115677777777655 78899999888777765

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.33  E-value=6.1e-06  Score=87.01  Aligned_cols=265  Identities=9%  Similarity=0.076  Sum_probs=167.9

Q ss_pred             CchhHHHHHHHHHHHhhhhh-h-hhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhcc
Q 015939          100 SENSCVDYLVKVAKFATGCE-A-NRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNT  177 (398)
Q Consensus       100 ~~~~~~~al~~L~~l~~~~~-~-~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~  177 (398)
                      +|..+..|+..+..++.... . ....+.   .+++.|+..+.+   ++..++..++.+|..++..-...-....   .-
T Consensus       382 ~~~~r~~a~~~l~~i~~~~~~~~~~~~l~---~il~~l~~~l~d---~~~~vr~~a~~~l~~l~~~~~~~~~~~~---~~  452 (861)
T 2bpt_A          382 NWRNREAAVMAFGSIMDGPDKVQRTYYVH---QALPSILNLMND---QSLQVKETTAWCIGRIADSVAESIDPQQ---HL  452 (861)
T ss_dssp             SHHHHHHHHHHHHHTSSSSCHHHHHHHHH---HHHHHHHHGGGC---SCHHHHHHHHHHHHHHHHHHGGGSCTTT---TH
T ss_pred             ChhHHHHHHHHHHHHHcCCCHHHHHHHHH---HHHHHHHHHcCC---CcHHHHHHHHHHHHHHHHHhhhhcCCHH---HH
Confidence            36688889999999885521 1 222222   457777777765   3456778899999888753211000000   12


Q ss_pred             CCChHHHHHHHhcCChhhHHHHHHHHHHhhcCch--hHHHhh-chhhHHHHHHHHhccc-cCHHHHHHHHHHHHHhcCCc
Q 015939          178 YNCLPLFLEILREGNLDSKIGSIKILDSISLDNE--SKRRVL-ETENLLSALFDYLKLA-EDQALNDAILSILITLSVYR  253 (398)
Q Consensus       178 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~--~~~~i~-~~~g~i~~Lv~lL~~~-~~~~~~~~a~~aL~~Ls~~~  253 (398)
                      ..+++.++..|++. +.++..|+++|..++..-.  ....+. ....+++.|+.++++. .++.++..++.+|..+....
T Consensus       453 ~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~  531 (861)
T 2bpt_A          453 PGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYA  531 (861)
T ss_dssp             HHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHc
Confidence            34678888888765 8899999999998876511  011111 1146788899999854 23678999999999996432


Q ss_pred             -chHHHHHHcCChHHHHHHhccc-------------CcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhc
Q 015939          254 -SVKAQLVELGMVQILTRILSDS-------------RTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMK  318 (398)
Q Consensus       254 -~~~~~~v~~g~v~~Lv~lL~~~-------------~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~  318 (398)
                       +.....+. ..++.+++.+...             +....++..++.+|..++. .+.......  ...++.++..+..
T Consensus       532 ~~~~~~~~~-~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~~~l~~  608 (861)
T 2bpt_A          532 TDTVAETSA-SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA--DMLMGLFFRLLEK  608 (861)
T ss_dssp             CGGGHHHHH-HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHHHHHHHS
T ss_pred             chhhHHHHH-HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHHHHcc
Confidence             22223332 3667777776421             1134566788888888875 222111222  2466777787877


Q ss_pred             cCh-hHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          319 VGK-TAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       319 ~~~-~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      .+. .+++.++.++..++...+ .+....+-  ..++.++..++.. ++.+|..|..++..+.+
T Consensus       609 ~~~~~v~~~~~~~l~~l~~~~~-~~~~~~l~--~i~~~l~~~l~~~-~~~vr~~a~~~l~~l~~  668 (861)
T 2bpt_A          609 KDSAFIEDDVFYAISALAASLG-KGFEKYLE--TFSPYLLKALNQV-DSPVSITAVGFIADISN  668 (861)
T ss_dssp             TTGGGTHHHHHHHHHHHHHHHG-GGGHHHHH--HHHHHHHHHHHCT-TSHHHHHHHHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHHHHHHHHh-hhHHHHHH--HHHHHHHHHhccc-cHHHHHHHHHHHHHHHH
Confidence            666 889999999988886543 23333222  2778888888644 67888889888887766

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.31  E-value=6e-07  Score=65.40  Aligned_cols=51  Identities=16%  Similarity=0.197  Sum_probs=42.7

Q ss_pred             CCcccccCccccC--CCceecCCC-----cccchhHHHHHHhc-CCCCCCcccccCCCC
Q 015939           11 PNLFRCPISLDVM--KSPVSLCTG-----VTYDRSSIQHWLES-GHDTCPATMQILSTK   61 (398)
Q Consensus        11 ~~~~~Cpi~~~~~--~dPv~~~~g-----~~~~r~~i~~~~~~-~~~~CP~~~~~l~~~   61 (398)
                      .++..|+||.+-+  .+|++++|+     |.|-+.||.+|+.. +..+||+|+..+...
T Consensus        13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~   71 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME   71 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred             CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence            3456899999877  579999996     99999999999975 447899999988744

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.28  E-value=7.8e-06  Score=70.88  Aligned_cols=226  Identities=12%  Similarity=0.107  Sum_probs=157.8

Q ss_pred             CcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC
Q 015939          130 GFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD  209 (398)
Q Consensus       130 g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~  209 (398)
                      +.+..|..+|.. .|  ..+..+++.+|..+...-++..  +.  ..-...++.++.++.+.+..+..+|.++|..|..+
T Consensus        33 ~~l~~L~~LL~d-kD--~~vk~raL~~LeellK~~~~~l--~~--~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~  105 (265)
T 3b2a_A           33 RALFLILELAGE-DD--ETTRLRAFVALGEILKRADSDL--RM--MVLERHLDVFINALSQENEKVTIKALRALGYLVKD  105 (265)
T ss_dssp             HHHHHHHHHTTS-SC--HHHHHHHHHHHHHHHHHSCHHH--HH--HHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTT
T ss_pred             hHHHHHHHHHhc-cc--hHHHHHHHHHHHHHHHhccccc--cH--HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcC
Confidence            556777888876 44  4567999999998887633310  11  22346799999999999999999999999988877


Q ss_pred             -chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHH
Q 015939          210 -NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKM  288 (398)
Q Consensus       210 -~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~  288 (398)
                       +-....+.   -++.+|.++++++ ++-.+..++..|..|......+.      .+..+.+++  .+.+..++..++.+
T Consensus       106 vpL~~~~y~---Kl~~aL~dlik~~-~~il~~eaae~Lgklkv~~~~~~------V~~~l~sLl--~Skd~~vK~agl~~  173 (265)
T 3b2a_A          106 VPMGSKTFL---KAAKTLVSLLESP-DDMMRIETIDVLSKLQPLEDSKL------VRTYINELV--VSPDLYTKVAGFCL  173 (265)
T ss_dssp             CCBCHHHHH---HHHHHHHHHTTSC-CHHHHHHHHHHHHHCCBSCCCHH------HHHHHHHHH--TCSSHHHHHHHHHH
T ss_pred             CCCCHHHHH---HHHHHHHHHhcCC-CchHHHHHHHHhCcCCcccchHH------HHHHHHHHH--hCCChhHHHHHHHH
Confidence             44444443   3678899999987 88899999999999954444433      567888999  45899999999999


Q ss_pred             HHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHh-hcCcHH
Q 015939          289 LSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQ-SENEGI  367 (398)
Q Consensus       289 L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~-~~~~~~  367 (398)
                      |.+++...+...-+-   +.+.-+-.++.+.++..++.|+.+|..+....=-++....+   -.+-..+.-+- -.|.+.
T Consensus       174 L~eia~~S~D~~i~~---~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~~~~~~~~---~~~~~~v~~l~~~~~~~~  247 (265)
T 3b2a_A          174 FLNMLNSSADSGHLT---LILDEIPSLLQNDNEFIVELALDVLEKALSFPLLENVKIEL---LKISRIVDGLVYREGAPI  247 (265)
T ss_dssp             HHHHGGGCSSCCCGG---GTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCCSCCHHHH---HHHHHHHHHGGGCSSCHH
T ss_pred             HHHhhcccCCHHHHH---HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCcccHhHHHHH---HHHHHHHHHHHHhcCChh
Confidence            999997332221111   33444667788889999999999999988752111222221   12222333332 345788


Q ss_pred             HHHHHHHHHHHHh
Q 015939          368 VRKMCGDLVKVLG  380 (398)
Q Consensus       368 ~k~~A~~lL~~l~  380 (398)
                      ++.+|..+...+-
T Consensus       248 ~~~ka~~v~~~le  260 (265)
T 3b2a_A          248 IRLKAKKVSDLID  260 (265)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999987765543

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=98.27  E-value=2.2e-05  Score=82.95  Aligned_cols=275  Identities=11%  Similarity=0.068  Sum_probs=173.6

Q ss_pred             HHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhh-hhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccch
Q 015939           88 RVWIEKIKSENESENSCVDYLVKVAKFATGCEAN-RRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGV  166 (398)
Q Consensus        88 ~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~-r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~  166 (398)
                      +.+...+...+.+.+.+..|++.+..++..-..+ ....... .+++.+...+.+   .+.+++..++.+|..+......
T Consensus       175 ~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~-~il~~l~~~~~~---~~~~vr~~a~~~l~~l~~~~~~  250 (876)
T 1qgr_A          175 TAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERH-FIMQVVCEATQC---PDTRVRVAALQNLVKIMSLYYQ  250 (876)
T ss_dssp             HHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHH-HHHHHHHHHTTC---SSHHHHHHHHHHHHHHHHHSGG
T ss_pred             HHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHHHHHHHcCC---CCHHHHHHHHHHHHHHHHHhHH
Confidence            3344445444222346788888888876431111 1111111 245666666544   3456778899999888764332


Q ss_pred             HHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchh----------------H---HHhh-chhhHHHHH
Q 015939          167 KEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNES----------------K---RRVL-ETENLLSAL  226 (398)
Q Consensus       167 ~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~----------------~---~~i~-~~~g~i~~L  226 (398)
                      .  .... + ....++.++..+.+.+.+++..|+.++..++.....                +   ..+. .....++.+
T Consensus       251 ~--~~~~-~-~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~l  326 (876)
T 1qgr_A          251 Y--METY-M-GPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL  326 (876)
T ss_dssp             G--CHHH-H-TTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHH
T ss_pred             H--HHHH-H-HHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHH
Confidence            1  1111 1 236788888888877889999999999888754200                0   0000 013467778


Q ss_pred             HHHhccc------cCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCC--HHH
Q 015939          227 FDYLKLA------EDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATC--SEG  298 (398)
Q Consensus       227 v~lL~~~------~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~--~~~  298 (398)
                      +..|...      .+...+.+|..+|..++.....  .++. ..++.+...+.  +.+..+++.|+.+|..++..  ++.
T Consensus       327 l~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~~--~~~~-~~l~~l~~~l~--~~~~~~r~~a~~~l~~i~~~~~~~~  401 (876)
T 1qgr_A          327 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIVP-HVLPFIKEHIK--NPDWRYRDAAVMAFGCILEGPEPSQ  401 (876)
T ss_dssp             HHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--GGHH-HHHHHHHHHTT--CSSHHHHHHHHHHHHHTSSSSCHHH
T ss_pred             HHHhhcccccccccccHHHHHHHHHHHHHHHHCcH--hhHH-HHHHHHHHHcc--CCChHHHHHHHHHHHHHHcCCCHHH
Confidence            8887532      2456888999999988653221  1122 35566667774  46889999999999999874  233


Q ss_pred             HHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhH-HHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015939          299 RLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARV-KEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVK  377 (398)
Q Consensus       299 ~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~  377 (398)
                      .....  ...++.++..+.+.++.++..|+.+|.+++...+. .. ... .-..+++.++..|+.  ++.+|..|.++|.
T Consensus       402 ~~~~~--~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~-~~~~~~-~l~~~l~~l~~~l~~--~~~v~~~a~~al~  475 (876)
T 1qgr_A          402 LKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE-AAINDV-YLAPLLQCLIEGLSA--EPRVASNVCWAFS  475 (876)
T ss_dssp             HHHHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGG-GTSSTT-THHHHHHHHHHHTTS--CHHHHHHHHHHHH
T ss_pred             HHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCch-hcccHH-HHHHHHHHHHHHHcC--CHHHHHHHHHHHH
Confidence            33444  35899999999989999999999999999875321 10 000 012456777777765  3788999999888


Q ss_pred             HHhc
Q 015939          378 VLGK  381 (398)
Q Consensus       378 ~l~~  381 (398)
                      .+.+
T Consensus       476 ~l~~  479 (876)
T 1qgr_A          476 SLAE  479 (876)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8876

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=98.25  E-value=1.3e-07  Score=74.09  Aligned_cols=45  Identities=16%  Similarity=0.354  Sum_probs=0.0

Q ss_pred             ccccCccccCCCce-----------------e-cCCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939           14 FRCPISLDVMKSPV-----------------S-LCTGVTYDRSSIQHWLESGHDTCPATMQILS   59 (398)
Q Consensus        14 ~~Cpi~~~~~~dPv-----------------~-~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~   59 (398)
                      -.|+||++.|.+|.                 + ++|||.|.+.||.+|+.. +.+||.||..+.
T Consensus        49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~~  111 (117)
T 4a0k_B           49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE  111 (117)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             CcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCeee
Confidence            37999999999853                 2 589999999999999976 678999998754

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=98.24  E-value=2.9e-05  Score=81.84  Aligned_cols=278  Identities=9%  Similarity=0.073  Sum_probs=169.6

Q ss_pred             HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhc--------c----CCcHHHHHHH
Q 015939           86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRK--------R----RSEIAVLESA  153 (398)
Q Consensus        86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~--------~----~~~~~~~~~a  153 (398)
                      -++.++..+.+.+.+...+..++..|..++...+........  ..++.++..|.+.        .    +....++..+
T Consensus       499 il~~L~~~l~~~d~~~~vr~~a~~al~~l~~~~~~~~~~~~~--~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~  576 (861)
T 2bpt_A          499 LVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSA--SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNI  576 (861)
T ss_dssp             HHHHHHHHHTCSCCGGGHHHHHHHHHHHHHHHCCGGGHHHHH--HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCcCcchHHHHHHHHHHHHHHHHcchhhHHHHH--HHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHH
Confidence            345566666654432336777888888877654432222221  4577777777641        0    1123455678


Q ss_pred             HHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCCh-hhHHHHHHHHHHhhcCc--hhHHHhhchhhHHHHHHHHh
Q 015939          154 VRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNL-DSKIGSIKILDSISLDN--ESKRRVLETENLLSALFDYL  230 (398)
Q Consensus       154 l~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~L~~~~--~~~~~i~~~~g~i~~Lv~lL  230 (398)
                      +.+|..++..-+..  ....   -...++.++..++..+. .+++.+..++..++..-  +....+   ...++.|+..|
T Consensus       577 ~~~l~~l~~~~~~~--~~~~---~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l---~~i~~~l~~~l  648 (861)
T 2bpt_A          577 LTVLAAVIRKSPSS--VEPV---ADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYL---ETFSPYLLKAL  648 (861)
T ss_dssp             HHHHHHHHHHCGGG--TGGG---HHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhh--hHHH---HHHHHHHHHHHHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH---HHHHHHHHHHh
Confidence            88888777543321  1111   23567888888988876 89999999999887652  222222   45888999999


Q ss_pred             ccccCHHHHHHHHHHHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCH-HHHHHHhhccCc
Q 015939          231 KLAEDQALNDAILSILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCS-EGRLALSEEASC  308 (398)
Q Consensus       231 ~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~-~~~~~i~~~~g~  308 (398)
                      .+. +++++..++.++..++..- +.-...+ ...++.+++.+.+.+.++.++..++.+|..++..- +.-....  ...
T Consensus       649 ~~~-~~~vr~~a~~~l~~l~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l--~~~  724 (861)
T 2bpt_A          649 NQV-DSPVSITAVGFIADISNSLEEDFRRYS-DAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYL--NDI  724 (861)
T ss_dssp             HCT-TSHHHHHHHHHHHHHHHHTGGGGHHHH-HHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHH--HHH
T ss_pred             ccc-cHHHHHHHHHHHHHHHHHhchhccchH-HHHHHHHHHHhCCccccHhhhHHHHHHHHHHHHHhhhhHHHHH--HHH
Confidence            766 7789999999999886432 2211222 34677788888642235889999999999988632 2222233  246


Q ss_pred             HHHHHHHHhccC-----------hhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHH----HHhhcC---cHHHHH
Q 015939          309 AGRVVERVMKVG-----------KTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLL----VMQSEN---EGIVRK  370 (398)
Q Consensus       309 v~~Lv~~l~~~~-----------~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~----~l~~~~---~~~~k~  370 (398)
                      ++.++..+....           ..+++.++.++..++..-++.   ..... ..++.++.    .++...   +..+|+
T Consensus       725 l~~l~~~~~~~~~~~d~d~~~~~~~vr~~~l~~~~~i~~~l~~~---~~~~~-~~~~~i~~~l~~~~~d~~~~~~~~vr~  800 (861)
T 2bpt_A          725 MALCVAAQNTKPENGTLEALDYQIKVLEAVLDAYVGIVAGLHDK---PEALF-PYVGTIFQFIAQVAEDPQLYSEDATSR  800 (861)
T ss_dssp             HHHHHHHHTCCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHTTTC---HHHHG-GGHHHHHHHHHHHHHCHHHHTSHHHHH
T ss_pred             HHHHHHHHhcCCCCCChHHHHHHHHHHHHHHHHHHHHHHHHccC---HHHHH-HHHHHHHHHHHHHHcCcccCCcHHHHH
Confidence            677777665321           346778888888877543211   11111 23333333    333211   578999


Q ss_pred             HHHHHHHHHhc
Q 015939          371 MCGDLVKVLGK  381 (398)
Q Consensus       371 ~A~~lL~~l~~  381 (398)
                      .|..++..|..
T Consensus       801 ~a~~~l~~l~~  811 (861)
T 2bpt_A          801 AAVGLIGDIAA  811 (861)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHH
Confidence            99999999887

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.21  E-value=1.3e-05  Score=71.50  Aligned_cols=184  Identities=15%  Similarity=0.108  Sum_probs=133.7

Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhc-cccCHHHHHHHHHHHHHhcCCcc-hHHH
Q 015939          182 PLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLK-LAEDQALNDAILSILITLSVYRS-VKAQ  258 (398)
Q Consensus       182 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~-~~~~~~~~~~a~~aL~~Ls~~~~-~~~~  258 (398)
                      +.+.+.+++.+...|..|+..|..+... +....  .....+++.|..+|. +. +..++..|+.+|..|+..-. .-..
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~--~~~~~i~~~L~~~l~kd~-~~~V~~~a~~~l~~la~~l~~~~~~   94 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLEN--GEYGALVSALKKVITKDS-NVVLVAMAGKCLALLAKGLAKRFSN   94 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCC--CCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCC--CCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHHHHHhhhHHH
Confidence            4577888888999999999999988765 33211  122467888889995 66 89999999999999985321 1122


Q ss_pred             HHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccC
Q 015939          259 LVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVY  338 (398)
Q Consensus       259 ~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~  338 (398)
                      .+. ..++.|+..+.  +.+..+++.|..+|.++.....     .  ...++.+...+...++.+++.++..|..+....
T Consensus        95 ~~~-~ilp~ll~~l~--d~~~~vr~~a~~aL~~~~~~~~-----~--~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~  164 (242)
T 2qk2_A           95 YAS-ACVPSLLEKFK--EKKPNVVTALREAIDAIYASTS-----L--EAQQESIVESLSNKNPSVKSETALFIARALTRT  164 (242)
T ss_dssp             HHH-HHHHHHHHGGG--CCCHHHHHHHHHHHHHHHTTSC-----H--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHH-HHHHHHHHHHc--CCCHHHHHHHHHHHHHHHHcCC-----H--HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence            222 37899999995  4678999999999999987432     1  135667888888889999999999999965432


Q ss_pred             C-ChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          339 K-DARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       339 ~-~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      + +......+  ...++.|+..|... ..++|+.|...+..+..
T Consensus       165 ~~~~~~~~~l--~~l~p~l~~~l~D~-~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          165 QPTALNKKLL--KLLTTSLVKTLNEP-DPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             CGGGCCHHHH--HHHHHHHHHHHTSS-CHHHHHHHHHHHHHHHH
T ss_pred             CCCCccHHHH--HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHH
Confidence            2 11112222  24788888888655 78999999998888765

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.18  E-value=6.4e-06  Score=90.72  Aligned_cols=270  Identities=10%  Similarity=0.060  Sum_probs=179.6

Q ss_pred             HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939           85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN  164 (398)
Q Consensus        85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~  164 (398)
                      ..+..++..+.+++.+  .+..|...|.+....+...-..-... ..++.|+..|.+   .+..++..|+.+|..++...
T Consensus         6 ~~l~~lL~~l~s~d~~--~R~~A~~~L~~~l~~~~~~~~~~~~~-~il~~Ll~~L~d---~~~~vR~~A~~~L~~l~~~~   79 (1230)
T 1u6g_C            6 YHISNLLEKMTSSDKD--FRFMATNDLMTELQKDSIKLDDDSER-KVVKMILKLLED---KNGEVQNLAVKCLGPLVSKV   79 (1230)
T ss_dssp             HHHHHHHHHTTCSSHH--HHHHHHHHHHHHTSSSCCSCCTTHHH-HHHHHHHHHTTC---SSHHHHHHHHHHHHHHHTTS
T ss_pred             hHHHHHHHhcCCCCHh--HHHHHHHHHHHHHcccccCCChhHHH-HHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhC
Confidence            3567788888887765  88889888887664421110000111 456777777765   34567799999999888644


Q ss_pred             chHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhH-------HHhhchhhHHHHHHHHhccccCHH
Q 015939          165 GVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESK-------RRVLETENLLSALFDYLKLAEDQA  237 (398)
Q Consensus       165 ~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~-------~~i~~~~g~i~~Lv~lL~~~~~~~  237 (398)
                      ..  +..      ..+++.|+..|.+.+..+|..|+.+|..++..-...       ...  ...+++.|+..+.+..++.
T Consensus        80 ~~--~~~------~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~--~~~llp~L~~~l~~~~~~~  149 (1230)
T 1u6g_C           80 KE--YQV------ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANV--CKKITGRLTSAIAKQEDVS  149 (1230)
T ss_dssp             CH--HHH------HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHH--HHHHHHHHHHHHSCCSCHH
T ss_pred             CH--HHH------HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHH--HHHHHHHHHHHHcCCCchH
Confidence            32  111      235788888888888899999999999887652111       111  2568999999998422788


Q ss_pred             HHHHHHHHHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHH
Q 015939          238 LNDAILSILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERV  316 (398)
Q Consensus       238 ~~~~a~~aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l  316 (398)
                      .+..|+.+|..++... +.-.. .-...++.++..|.  ++++.++..|+.+|..++.....  .+.  ...++.++..+
T Consensus       150 ~~~~al~~l~~~~~~~~~~l~~-~~~~ll~~l~~~L~--~~~~~vR~~a~~al~~l~~~~~~--~~~--~~~l~~l~~~L  222 (1230)
T 1u6g_C          150 VQLEALDIMADMLSRQGGLLVN-FHPSILTCLLPQLT--SPRLAVRKRTIIALGHLVMSCGN--IVF--VDLIEHLLSEL  222 (1230)
T ss_dssp             HHHHHHHHHHHHHHHTCSSCTT-THHHHHHHHGGGGG--CSSHHHHHHHHHHHHHHTTTC------C--TTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHhHHHH-HHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHhcCH--HHH--HHHHHHHHHHh
Confidence            9999999999987421 10000 11235666777774  36778999999999999874321  223  25688888888


Q ss_pred             hcc-ChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          317 MKV-GKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       317 ~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      ... +...+..++.++..++...+ .....  .-...++.++..++.. ++.+|+.|..++..+.+
T Consensus       223 ~~~~~~~~r~~a~~~l~~l~~~~~-~~~~~--~l~~l~~~ll~~l~d~-~~~vR~~a~~~l~~l~~  284 (1230)
T 1u6g_C          223 SKNDSMSTTRTYIQCIAAISRQAG-HRIGE--YLEKIIPLVVKFCNVD-DDELREYCIQAFESFVR  284 (1230)
T ss_dssp             HHTCSSCSCTTHHHHHHHHHHHSS-GGGTT--SCTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHH
T ss_pred             ccCCchhHHHHHHHHHHHHHHHhH-HHHHH--HHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            764 34667788888888886543 12111  1145788888888755 78899999888887776

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.12  E-value=6.7e-05  Score=68.97  Aligned_cols=192  Identities=12%  Similarity=0.013  Sum_probs=136.3

Q ss_pred             CCCHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhh
Q 015939           81 TVPEQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLI  160 (398)
Q Consensus        81 p~p~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l  160 (398)
                      +.|..++..+++.|.+++..  ....++..|..+-..+......++.. ||+..|+..... .+  ...+..++++|.++
T Consensus       114 tsps~ra~~iiekL~~~~~~--~lr~aLfsLk~~~q~D~~Fa~EFI~~-~GL~~Li~vi~~-~~--gN~q~Y~L~AL~~L  187 (339)
T 3dad_A          114 TQLSVRVNAILEKLYSSSGP--ELRRSLFSLKQIFQEDKDLVPEFVHS-EGLSCLIRVGAA-AD--HNYQSYILRALGQL  187 (339)
T ss_dssp             ECHHHHHHHHHHHHHHCCHH--HHHHHHHHHHHHHHTCTTHHHHHHHT-THHHHHHHHHTT-SC--HHHHHHHHHHHHHH
T ss_pred             cCcHHHHHHHHHHHhcCCcH--HHHHHHHHHHHHhhcchHHHHHHHHh-ccHHHHHHHHHh-cC--hHHHHHHHHHHHHH
Confidence            34567788899999977654  88999999999554556666666777 899999999987 44  44569999999999


Q ss_pred             hcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCch-hHHHhhchhh---------HHHHHHHHh
Q 015939          161 VNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNE-SKRRVLETEN---------LLSALFDYL  230 (398)
Q Consensus       161 ~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~-~~~~i~~~~g---------~i~~Lv~lL  230 (398)
                      ....+.    -..++.+...|..+..++.+.+..+.+.|..+|..+....+ +...+.....         .+..|+.+|
T Consensus       188 M~~v~G----m~gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L  263 (339)
T 3dad_A          188 MLFVDG----MLGVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSIL  263 (339)
T ss_dssp             TTSHHH----HHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHH
T ss_pred             Hhcccc----ccchhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHH
Confidence            876555    23435567789999999998889999999999999877743 4443332111         267899999


Q ss_pred             c---cccCHHHHHHHHHHHHHhc---CCcchHHHHH----HcCChHHHHHHhcccCcchhhHH
Q 015939          231 K---LAEDQALNDAILSILITLS---VYRSVKAQLV----ELGMVQILTRILSDSRTQILTVE  283 (398)
Q Consensus       231 ~---~~~~~~~~~~a~~aL~~Ls---~~~~~~~~~v----~~g~v~~Lv~lL~~~~~~~~~~~  283 (398)
                      +   +. +.+.+..|+..|-.+-   .+.+.+..++    +.|.-..+.+.|+....++++++
T Consensus       264 ~~~~~~-D~elq~~amtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~  325 (339)
T 3dad_A          264 EEKNGA-DPELLVYTVTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRT  325 (339)
T ss_dssp             TTTTSC-CHHHHHHHHHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHH
T ss_pred             hccCCC-CHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHH
Confidence            7   44 8889999888777663   2233344444    34544566676754333555554

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.09  E-value=4.9e-07  Score=72.80  Aligned_cols=121  Identities=14%  Similarity=0.034  Sum_probs=84.1

Q ss_pred             cCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchH
Q 015939          177 TYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVK  256 (398)
Q Consensus       177 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~  256 (398)
                      ....++.++.+|++.++.+|..|+++|..+..           . .++.|+.+|++. ++.++..|+++|.++..     
T Consensus        10 ~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~-~~~~L~~~L~d~-~~~vR~~A~~aL~~~~~-----   71 (131)
T 1te4_A           10 HSSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------E-AFEPLLESLSNE-DWRIRGAAAWIIGNFQD-----   71 (131)
T ss_dssp             -----------CCSSCCCSSSSCCSSTTSCSS-----------T-THHHHHHGGGCS-CHHHHHHHHHHHGGGCS-----
T ss_pred             ccccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------h-HHHHHHHHHcCC-CHHHHHHHHHHHHhcCC-----
Confidence            45678888888888888888888877765432           1 258888888887 88899999999888753     


Q ss_pred             HHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHH
Q 015939          257 AQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWS  333 (398)
Q Consensus       257 ~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~  333 (398)
                           .++++.|+.+|.  ++++.++..|+.+|..+..           ..+++.|+.++.+.++.++..|+.+|..
T Consensus        72 -----~~a~~~L~~~L~--d~~~~VR~~A~~aL~~~~~-----------~~a~~~L~~~l~d~~~~vr~~A~~aL~~  130 (131)
T 1te4_A           72 -----ERAVEPLIKLLE--DDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYLET  130 (131)
T ss_dssp             -----HHHHHHHHHHHH--HCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHGGG
T ss_pred             -----HHHHHHHHHHHc--CCCHHHHHHHHHHHHHhCc-----------HHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence                 235788888885  4688899999999988752           2457778888887888888888877754

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.08  E-value=6e-05  Score=67.63  Aligned_cols=192  Identities=13%  Similarity=0.122  Sum_probs=130.4

Q ss_pred             HHHHHHcCCCCchhHHHHHHHHHH-HhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc-hH
Q 015939           90 WIEKIKSENESENSCVDYLVKVAK-FATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG-VK  167 (398)
Q Consensus        90 l~~~l~~~~~~~~~~~~al~~L~~-l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~-~~  167 (398)
                      +.+.+.+.  .|.++.+|+..|.. +..+.+.....-.+....+..|...+..  +.+..++..|+.+|..++.+-. ..
T Consensus        21 f~~~l~s~--~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~--D~n~~v~~~A~~al~~la~~l~~~~   96 (249)
T 2qk1_A           21 FQERITSS--KWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQK--DANIQAVALAAQSVELICDKLKTPG   96 (249)
T ss_dssp             HHHHHTCS--SHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHH--CSCHHHHHHHHHHHHHHHHHHCTTT
T ss_pred             HHHHhhcC--CHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHHHHhccccc
Confidence            34455544  37799999999999 8755332211012221456666667633  4566778999999999985332 10


Q ss_pred             HHhh-HhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHH
Q 015939          168 EKLN-RLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSI  245 (398)
Q Consensus       168 ~~~~-~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~a  245 (398)
                        .. .+   ...++|.+++.+......++..+..+|..+... +..... ..-...++.|+..|++. ++.++..++.+
T Consensus        97 --f~~~y---~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~-~~l~~ll~~l~~~l~~k-~~~vk~~al~~  169 (249)
T 2qk1_A           97 --FSKDY---VSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASS-GRNEDMLKDILEHMKHK-TPQIRMECTQL  169 (249)
T ss_dssp             --SCHHH---HHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTT-CTTHHHHHHHHHHTTCS-SHHHHHHHHHH
T ss_pred             --ccHHH---HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccC-CcHHHHHHHHHHHHcCC-ChHHHHHHHHH
Confidence              01 11   123688999999888889999999999888775 221111 10146889999999998 89999999999


Q ss_pred             HHHhcCCcc---hH-HHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC
Q 015939          246 LITLSVYRS---VK-AQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT  294 (398)
Q Consensus       246 L~~Ls~~~~---~~-~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~  294 (398)
                      |..+.....   .. ...+....+|.|.+++  .+++++++..|..+|..++.
T Consensus       170 l~~~~~~~~~~~~~l~~~l~~~iip~l~~~l--~D~~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          170 FNASMKEEKDGYSTLQRYLKDEVVPIVIQIV--NDTQPAIRTIGFESFAILIK  220 (249)
T ss_dssp             HHHHHHHCCSCSHHHHHHHTTTHHHHHHHHH--TCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCcchhHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHHHH
Confidence            999874332   11 1223256899999999  45789999999999988874

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.06  E-value=0.0017  Score=66.01  Aligned_cols=284  Identities=13%  Similarity=0.095  Sum_probs=152.9

Q ss_pred             cccHHHHHHHHHHHhhCCCC-HH----HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHH
Q 015939           64 VPNLTLHRLIAHWSHQLTVP-EQ----EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGV  138 (398)
Q Consensus        64 ~~n~~l~~~i~~~~~~~p~p-~~----~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~l  138 (398)
                      .+|..+|++.=.+....... .+    .+..+.+.+.+++.-  .+.-|+..|..+...  +    +.+  ..++.+..+
T Consensus        85 s~~~~~Krl~YL~l~~~~~~~~e~~~L~iN~l~kDl~~~n~~--ir~lALr~L~~i~~~--e----~~~--~l~~~v~~~  154 (621)
T 2vgl_A           85 SNRYTEKQIGYLFISVLVNSNSELIRLINNAIKNDLASRNPT--FMGLALHCIANVGSR--E----MAE--AFAGEIPKI  154 (621)
T ss_dssp             CSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHSCCHH--HHHHHHHHHHHHCCH--H----HHH--HHTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHhcCCCCHH--HHHHHHHHhhccCCH--H----HHH--HHHHHHHHH
Confidence            45677777766665544332 12    234556667766543  566677777776432  2    332  456777888


Q ss_pred             hhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhc
Q 015939          139 LNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLE  218 (398)
Q Consensus       139 L~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~  218 (398)
                      |.+ .+.++-++..|+-++..+...+++      . +...++++.+.++|.+.++.++.+|+.+|..++..+..  .+..
T Consensus       155 l~~-~d~~~~VRK~A~~al~kl~~~~p~------~-~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~--~~~~  224 (621)
T 2vgl_A          155 LVA-GDTMDSVKQSAALCLLRLYRTSPD------L-VPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE--EFKT  224 (621)
T ss_dssp             HHC-SSSCHHHHHHHHHHHHHHHHHCGG------G-CCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--HHTT
T ss_pred             HhC-CCCCHHHHHHHHHHHHHHHHhChh------h-cCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--HHHH
Confidence            843 345566779999999998875443      1 33358999999999988999999999999999875321  1110


Q ss_pred             -hhhHHHHHHHHhccc------------cCHHHHHHHHHHHHHhcCCc--chHHHHHHcCChHHHHHHhc---------c
Q 015939          219 -TENLLSALFDYLKLA------------EDQALNDAILSILITLSVYR--SVKAQLVELGMVQILTRILS---------D  274 (398)
Q Consensus       219 -~~g~i~~Lv~lL~~~------------~~~~~~~~a~~aL~~Ls~~~--~~~~~~v~~g~v~~Lv~lL~---------~  274 (398)
                       .+..+..|-+++..+            .++=.+...++.|..++..+  +.+..+.+  .++.++..+.         +
T Consensus       225 ~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~  302 (621)
T 2vgl_A          225 SVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQH  302 (621)
T ss_dssp             HHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHH
T ss_pred             HHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccc
Confidence             022333333443221            14567777777777776532  23333322  2222222211         0


Q ss_pred             cCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHH
Q 015939          275 SRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLT  354 (398)
Q Consensus       275 ~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~  354 (398)
                      .+....+.-.|..++..+...++.+..      ++..|..++.+.++..+-.|+..|..++...++.    .++ .....
T Consensus       303 ~n~~~aVl~ea~~~i~~l~~~~~~~~~------~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~----~~~-~~~~~  371 (621)
T 2vgl_A          303 SNAKNAVLFEAISLIIHHDSEPNLLVR------ACNQLGQFLQHRETNLRYLALESMCTLASSEFSH----EAV-KTHIE  371 (621)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCHHHHHH------HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTH----HHH-HTTHH
T ss_pred             cchHHHHHHHHHHHHHhcCCcHHHHHH------HHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcH----HHH-HHHHH
Confidence            011225555555555555543332222      2334555555555566666666666655432110    111 12344


Q ss_pred             HHHHHHhhcCcHHHHHHHHHHHHHHh
Q 015939          355 KLLLVMQSENEGIVRKMCGDLVKVLG  380 (398)
Q Consensus       355 ~Ll~~l~~~~~~~~k~~A~~lL~~l~  380 (398)
                      .++..|..+.+..+|.+|..+|..+.
T Consensus       372 ~i~~~L~~d~d~~Ir~~aL~lL~~l~  397 (621)
T 2vgl_A          372 TVINALKTERDVSVRQRAVDLLYAMC  397 (621)
T ss_dssp             HHHHHHTTCCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHhccCCCHhHHHHHHHHHHHHc
Confidence            44444542224555555555554443

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.04  E-value=0.0016  Score=66.27  Aligned_cols=253  Identities=11%  Similarity=0.144  Sum_probs=160.9

Q ss_pred             HHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHH
Q 015939           90 WIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEK  169 (398)
Q Consensus        90 l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~  169 (398)
                      +.+.+.+.+.+.-.+..|+-++..+...+++.   +... +.++.|..+|.+ .  +..++..|+.+|..++..++.   
T Consensus       151 v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~---~~~~-~~~~~l~~lL~d-~--d~~V~~~a~~~l~~i~~~~~~---  220 (621)
T 2vgl_A          151 IPKILVAGDTMDSVKQSAALCLLRLYRTSPDL---VPMG-DWTSRVVHLLND-Q--HLGVVTAATSLITTLAQKNPE---  220 (621)
T ss_dssp             HHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGG---CCCC-SCHHHHHHHTTC-S--CHHHHHHHHHHHHHHHHHCHH---
T ss_pred             HHHHHhCCCCCHHHHHHHHHHHHHHHHhChhh---cCch-hHHHHHHHHhCC-C--CccHHHHHHHHHHHHHHhChH---
Confidence            44445333333347788999999988765542   2223 889999999976 3  456779999999998865432   


Q ss_pred             hhHhhhccCCChHHHHHHHh----cC-------------ChhhHHHHHHHHHHhhcCc--hhHHHhhchhhHHHHHHHHh
Q 015939          170 LNRLILNTYNCLPLFLEILR----EG-------------NLDSKIGSIKILDSISLDN--ESKRRVLETENLLSALFDYL  230 (398)
Q Consensus       170 ~~~~il~~~g~i~~Lv~lL~----~~-------------~~~~~~~a~~~L~~L~~~~--~~~~~i~~~~g~i~~Lv~lL  230 (398)
                         . +  ...++.+++.|.    .+             ++-.+.....+|..+...+  +.+..+   ...++.++..+
T Consensus       221 ---~-~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l---~~~L~~il~~~  291 (621)
T 2vgl_A          221 ---E-F--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRL---TECLETILNKA  291 (621)
T ss_dssp             ---H-H--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHH---HHHHHHHHHHH
T ss_pred             ---H-H--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHH---HHHHHHHHHhh
Confidence               1 1  134555554443    32             3556776777777666532  333222   22344444332


Q ss_pred             ---------ccc-cCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHH
Q 015939          231 ---------KLA-EDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRL  300 (398)
Q Consensus       231 ---------~~~-~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~  300 (398)
                               ++. ....+.-.+++++..+....+...     .++..|..+|.  +.++.++-.++..|..++.......
T Consensus       292 ~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~-----~~~~~L~~~L~--~~~~niry~aL~~l~~l~~~~~~~~  364 (621)
T 2vgl_A          292 QEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV-----RACNQLGQFLQ--HRETNLRYLALESMCTLASSEFSHE  364 (621)
T ss_dssp             HSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-----HHHHHHHHHSS--CSCHHHHHHHHHHHHHHTTCTTTHH
T ss_pred             ccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH-----HHHHHHHHHhc--CCCcchHHHHHHHHHHHHhccCcHH
Confidence                     111 023678888899998874433222     25677889884  4688999999999999987432122


Q ss_pred             HHhhccCcHHHHHHHHh-ccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHH
Q 015939          301 ALSEEASCAGRVVERVM-KVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVL  379 (398)
Q Consensus       301 ~i~~~~g~v~~Lv~~l~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l  379 (398)
                      .+.   .....++..+. +.+..++..|+.+|..++.    +++...     ++..|...+... +...|..+...+..+
T Consensus       365 ~~~---~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~----~~Nv~~-----Iv~eL~~yl~~~-d~~~~~~~v~~I~~l  431 (621)
T 2vgl_A          365 AVK---THIETVINALKTERDVSVRQRAVDLLYAMCD----RSNAQQ-----IVAEMLSYLETA-DYSIREEIVLKVAIL  431 (621)
T ss_dssp             HHH---TTHHHHHHHHTTCCCHHHHHHHHHHHHHHCC----HHHHHH-----HHHHHHHHHHHC-CHHHHHHHHHHHHHH
T ss_pred             HHH---HHHHHHHHHhccCCCHhHHHHHHHHHHHHcC----hhhHHH-----HHHHHHHHHHhc-CHHHHHHHHHHHHHH
Confidence            222   45777888888 8899999999999999986    345444     344577777654 677777776655555


Q ss_pred             hc
Q 015939          380 GK  381 (398)
Q Consensus       380 ~~  381 (398)
                      +.
T Consensus       432 a~  433 (621)
T 2vgl_A          432 AE  433 (621)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.04  E-value=0.00015  Score=64.53  Aligned_cols=183  Identities=9%  Similarity=0.086  Sum_probs=130.5

Q ss_pred             HHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHh-cCChhhHHHHHHHHHHhhcCc--
Q 015939          134 AVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILR-EGNLDSKIGSIKILDSISLDN--  210 (398)
Q Consensus       134 ~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~~--  210 (398)
                      .+...+.+   .+-+.+..|+..|..+....+..   ...  .-..+++.|...|. ..+..++..|+.+|..|+..-  
T Consensus        19 ~l~~~l~s---~~w~~R~~a~~~L~~l~~~~~~~---~~~--~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~   90 (242)
T 2qk2_A           19 DFYDKLEE---KKWTLRKESLEVLEKLLTDHPKL---ENG--EYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAK   90 (242)
T ss_dssp             THHHHHTC---SSHHHHHHHHHHHHHHHHHCSSB---CCC--CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHhhhcc---CCHHHHHHHHHHHHHHHccCCCC---CCC--CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhh
Confidence            35566655   33455688888888877542110   000  01245777888884 789999999999999999652  


Q ss_pred             hhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHH
Q 015939          211 ESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLS  290 (398)
Q Consensus       211 ~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~  290 (398)
                      .....   ...+++.|+..+++. ++.++.++..+|.++.......      ..++.+...|+  +.++.++..++..|.
T Consensus        91 ~~~~~---~~~ilp~ll~~l~d~-~~~vr~~a~~aL~~~~~~~~~~------~ll~~l~~~l~--~~~~~vr~~~l~~l~  158 (242)
T 2qk2_A           91 RFSNY---ASACVPSLLEKFKEK-KPNVVTALREAIDAIYASTSLE------AQQESIVESLS--NKNPSVKSETALFIA  158 (242)
T ss_dssp             GGHHH---HHHHHHHHHHGGGCC-CHHHHHHHHHHHHHHHTTSCHH------HHHHHHHHHTT--CSCHHHHHHHHHHHH
T ss_pred             hHHHH---HHHHHHHHHHHHcCC-CHHHHHHHHHHHHHHHHcCCHH------HHHHHHHHHHc--CCChHHHHHHHHHHH
Confidence            22222   145899999999998 8889999999999997654321      25677888885  368899999999999


Q ss_pred             HHhC-C-HHH-HHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccC
Q 015939          291 IVAT-C-SEG-RLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVY  338 (398)
Q Consensus       291 ~La~-~-~~~-~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~  338 (398)
                      .+.. . ++. -....  ...++.|+..+.+.+..++..|..+|..++..-
T Consensus       159 ~~l~~~~~~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v  207 (242)
T 2qk2_A          159 RALTRTQPTALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM  207 (242)
T ss_dssp             HHHTTCCGGGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence            9654 2 331 11222  257889999999999999999999999988643

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.00  E-value=0.00022  Score=65.55  Aligned_cols=185  Identities=16%  Similarity=0.076  Sum_probs=132.1

Q ss_pred             HHHHHHhcCChhhHHHHHHHHHH-hhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHH-
Q 015939          183 LFLEILREGNLDSKIGSIKILDS-ISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLV-  260 (398)
Q Consensus       183 ~Lv~lL~~~~~~~~~~a~~~L~~-L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v-  260 (398)
                      .+++-|.+++.+.+..+..-|.. +..+.+....+.. .+|+..|+++.... +.+.+..+++||.+|-.+.+...-++ 
T Consensus       122 ~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~-~~GL~~Li~vi~~~-~gN~q~Y~L~AL~~LM~~v~Gm~gvvs  199 (339)
T 3dad_A          122 AILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVH-SEGLSCLIRVGAAA-DHNYQSYILRALGQLMLFVDGMLGVVA  199 (339)
T ss_dssp             HHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHH-TTHHHHHHHHHTTS-CHHHHHHHHHHHHHHTTSHHHHHHHHH
T ss_pred             HHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHH-hccHHHHHHHHHhc-ChHHHHHHHHHHHHHHhccccccchhC
Confidence            34455666766777778888886 6677788887777 78899999999988 89999999999999998887776776 


Q ss_pred             HcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHH-HHHHHhh------cc-C--cHHHHHHHHh---ccChhHHHHH
Q 015939          261 ELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSE-GRLALSE------EA-S--CAGRVVERVM---KVGKTAREDA  327 (398)
Q Consensus       261 ~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~-~~~~i~~------~~-g--~v~~Lv~~l~---~~~~~~~~~a  327 (398)
                      ....|..+..++.  +.+..+++.|+++|..++...+ +..-+..      .+ |  -...|+.+|.   .++...+.+|
T Consensus       200 ~~~fI~~lyslv~--s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a  277 (339)
T 3dad_A          200 HSDTIQWLYTLCA--SLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT  277 (339)
T ss_dssp             CHHHHHHHHHGGG--CSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred             CHHHHHHHHHHHc--CccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence            4557888888885  4788999999999999987433 3332221      11 1  2779999997   5788999999


Q ss_pred             HHHHHHhhccCCChhHHHH----HHhcCCHHHHHHHHhhcC-cHHHHHH
Q 015939          328 VVVIWSMCCVYKDARVKEA----VVNSNGLTKLLLVMQSEN-EGIVRKM  371 (398)
Q Consensus       328 ~~~L~~l~~~~~~~~~~~~----~~~~g~~~~Ll~~l~~~~-~~~~k~~  371 (398)
                      ...+-.+-...++++.+..    .-+.|.=..+...|...+ ++..++.
T Consensus       278 mtLIN~lL~~apd~d~~~di~d~Le~~gi~~~i~r~l~~~~~~~~l~~Q  326 (339)
T 3dad_A          278 VTLINKTLAALPDQDSFYDVTDALEQQGMEALVQRHLGTAGTDVDLRTQ  326 (339)
T ss_dssp             HHHHHHHHHHCSSHHHHHHHHHHHHHTTHHHHHHHHHSCTTSCHHHHHH
T ss_pred             HHHHHHHHhcCCChhHHHHHHHHHHHccHHHHHHHHHhccCCCHHHHHH
Confidence            9888666655444442333    334554445555576543 4455544

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=97.86  E-value=5.5e-05  Score=83.30  Aligned_cols=233  Identities=10%  Similarity=0.057  Sum_probs=152.1

Q ss_pred             HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939           85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN  164 (398)
Q Consensus        85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~  164 (398)
                      ..++.+++.+.+.+  ++.+..|+..|..++..-+.  ..+.   .+++.|+..|.+ .+  ..++..|..+|..++..-
T Consensus        48 ~il~~Ll~~L~d~~--~~vR~~A~~~L~~l~~~~~~--~~~~---~i~~~Ll~~l~d-~~--~~vR~~a~~~L~~i~~~l  117 (1230)
T 1u6g_C           48 KVVKMILKLLEDKN--GEVQNLAVKCLGPLVSKVKE--YQVE---TIVDTLCTNMLS-DK--EQLRDISSIGLKTVIGEL  117 (1230)
T ss_dssp             HHHHHHHHHTTCSS--HHHHHHHHHHHHHHHTTSCH--HHHH---HHHHHHHHHTTC-SS--SHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHhCCH--HHHH---HHHHHHHHHhcC-Cc--HHHHHHHHHHHHHHHHhC
Confidence            34566777776443  45888899999988864322  1121   456677777765 33  345688888888777543


Q ss_pred             chHH---HhhHhhhccCCChHHHHHHHh-cCChhhHHHHHHHHHHhhcC-ch-hHHHhhchhhHHHHHHHHhccccCHHH
Q 015939          165 GVKE---KLNRLILNTYNCLPLFLEILR-EGNLDSKIGSIKILDSISLD-NE-SKRRVLETENLLSALFDYLKLAEDQAL  238 (398)
Q Consensus       165 ~~~~---~~~~~il~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~L~~~-~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~  238 (398)
                      ....   ....  -.....+|.|+..+. +.+...+..|+.+|..++.. +. ....   ....++.|+..|.+. ++.+
T Consensus       118 ~~~~~~~~~~~--~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~---~~~ll~~l~~~L~~~-~~~v  191 (1230)
T 1u6g_C          118 PPASSGSALAA--NVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF---HPSILTCLLPQLTSP-RLAV  191 (1230)
T ss_dssp             C-----CCTHH--HHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT---HHHHHHHHGGGGGCS-SHHH
T ss_pred             CCcccccchHH--HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHH---HHHHHHHHHHHHcCC-cHHH
Confidence            3210   0000  012356899999998 47889999999999988753 11 1111   146788888888887 7889


Q ss_pred             HHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCC-HHHHHHHhhccCcHHHHHHHHh
Q 015939          239 NDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATC-SEGRLALSEEASCAGRVVERVM  317 (398)
Q Consensus       239 ~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~-~~~~~~i~~~~g~v~~Lv~~l~  317 (398)
                      +..|+.+|..++......  +. ...++.++..|.+ ..+..++..++.++..++.. +..-....  ...++.++..+.
T Consensus       192 R~~a~~al~~l~~~~~~~--~~-~~~l~~l~~~L~~-~~~~~~r~~a~~~l~~l~~~~~~~~~~~l--~~l~~~ll~~l~  265 (1230)
T 1u6g_C          192 RKRTIIALGHLVMSCGNI--VF-VDLIEHLLSELSK-NDSMSTTRTYIQCIAAISRQAGHRIGEYL--EKIIPLVVKFCN  265 (1230)
T ss_dssp             HHHHHHHHHHHTTTC------C-TTHHHHHHHHHHH-TCSSCSCTTHHHHHHHHHHHSSGGGTTSC--TTHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHhcCHH--HH-HHHHHHHHHHhcc-CCchhHHHHHHHHHHHHHHHhHHHHHHHH--HHHHHHHHHHhc
Confidence            999999999998654322  22 2358888888864 22345666777777777652 11111111  367888899888


Q ss_pred             ccChhHHHHHHHHHHHhhccCC
Q 015939          318 KVGKTAREDAVVVIWSMCCVYK  339 (398)
Q Consensus       318 ~~~~~~~~~a~~~L~~l~~~~~  339 (398)
                      +.++.+++.++.++..++...+
T Consensus       266 d~~~~vR~~a~~~l~~l~~~~~  287 (1230)
T 1u6g_C          266 VDDDELREYCIQAFESFVRRCP  287 (1230)
T ss_dssp             SCCTTTHHHHHHHHHHHHHCTT
T ss_pred             CCCHHHHHHHHHHHHHHHHHCh
Confidence            8889999999999988876543

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=97.82  E-value=0.00017  Score=64.64  Aligned_cols=192  Identities=10%  Similarity=0.055  Sum_probs=131.0

Q ss_pred             HHHHHhcCChhhHHHHHHHHHH-hhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCc---chHHH
Q 015939          184 FLEILREGNLDSKIGSIKILDS-ISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYR---SVKAQ  258 (398)
Q Consensus       184 Lv~lL~~~~~~~~~~a~~~L~~-L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~---~~~~~  258 (398)
                      +.+.+.+.++.-|..|+..|.. +... ++...........+..|...|..+.+..++..|+.+|..|+.+-   .....
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~  100 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD  100 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence            4566788899999999999998 8743 22111012224678888999943338889999999999998422   22102


Q ss_pred             HHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCH-HHHHHH-hhccCcHHHHHHHHhccChhHHHHHHHHHHHhhc
Q 015939          259 LVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCS-EGRLAL-SEEASCAGRVVERVMKVGKTAREDAVVVIWSMCC  336 (398)
Q Consensus       259 ~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~-~~~~~i-~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~  336 (398)
                      .... .++.+++.+.  +..+.+++.+..+|..++..- .....- .  ...++.|...|.+.++.+++.++.+|..+..
T Consensus       101 y~~~-llp~ll~~l~--dkk~~V~~aa~~al~~i~~~~~~~~~~~~l--~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~  175 (249)
T 2qk1_A          101 YVSL-VFTPLLDRTK--EKKPSVIEAIRKALLTICKYYDPLASSGRN--EDMLKDILEHMKHKTPQIRMECTQLFNASMK  175 (249)
T ss_dssp             HHHH-HHHHHHHGGG--CCCHHHHHHHHHHHHHHHHHSCTTCTTCTT--HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHH-HHHHHHHHHc--CCCHHHHHHHHHHHHHHHHHccccccCCcH--HHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence            2222 6889999995  356788888888888887621 100000 1  1356678888888899999999999999987


Q ss_pred             cCCCh-hHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          337 VYKDA-RVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       337 ~~~~~-~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      ..+.. ......+.-..++.|...|... ++.+|+.|...|..+.+
T Consensus       176 ~~~~~~~~l~~~l~~~iip~l~~~l~D~-~~~VR~aA~~~l~~i~~  220 (249)
T 2qk1_A          176 EEKDGYSTLQRYLKDEVVPIVIQIVNDT-QPAIRTIGFESFAILIK  220 (249)
T ss_dssp             HCCSCSHHHHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred             HcCCcchhHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHH
Confidence            65321 2212222246888888888655 89999999998887665

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.71  E-value=0.0024  Score=61.58  Aligned_cols=225  Identities=13%  Similarity=0.141  Sum_probs=148.1

Q ss_pred             hHHHHHHHHHHHhhhhhhhhhhhhhcCC-cHHHHHHHhhhc--------------cCCcHHHHHHHHHHHHhhhcccchH
Q 015939          103 SCVDYLVKVAKFATGCEANRRFLASYGG-FVEAVFGVLNRK--------------RRSEIAVLESAVRVLNLIVNENGVK  167 (398)
Q Consensus       103 ~~~~al~~L~~l~~~~~~~r~~i~~~~g-~v~~L~~lL~~~--------------~~~~~~~~~~al~~L~~l~~~~~~~  167 (398)
                      .+--++..|..+... +.+|..+.+.+| .++.++.++...              +....+++-+++-++..|+.+.+..
T Consensus       184 ~~~i~v~~L~~Ll~~-~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~  262 (480)
T 1ho8_A          184 TCYVCIRLLQELAVI-PEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFA  262 (480)
T ss_dssp             HHHHHHHHHHHHHTS-HHHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHH
T ss_pred             hHHHHHHHHHHHhcc-hhHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHHHHHHHHHcCHHHH
Confidence            344578888888866 778888766523 477777665532              1224677889999999999876642


Q ss_pred             HHhhHhhhccCCCh--HHHHHHHhcC-ChhhHHHHHHHHHHhhcCc--h---h-HHHhhchhhHHHHHHHHhccc--cCH
Q 015939          168 EKLNRLILNTYNCL--PLFLEILREG-NLDSKIGSIKILDSISLDN--E---S-KRRVLETENLLSALFDYLKLA--EDQ  236 (398)
Q Consensus       168 ~~~~~~il~~~g~i--~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~--~---~-~~~i~~~~g~i~~Lv~lL~~~--~~~  236 (398)
                          .. +.+.+..  +.|+++++.. -..+..-+..+|.||....  +   . +..+.. .++ .+++..|+..  .|+
T Consensus       263 ----~~-l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~-~~~-l~~l~~L~~rk~~De  335 (480)
T 1ho8_A          263 ----NE-LVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLL-GNA-LPTVQSLSERKYSDE  335 (480)
T ss_dssp             ----HH-HHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHH-HCH-HHHHHHHHSSCCSSH
T ss_pred             ----HH-HHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHH-ccc-hHHHHHHhhCCCCcH
Confidence                33 4444533  6778888866 4666667888999998764  1   1 122322 344 4566666643  566


Q ss_pred             HHHHHHHHH-------HHHhcCCcchHHHHHH--------------------------cCChHHHHHHhccc--------
Q 015939          237 ALNDAILSI-------LITLSVYRSVKAQLVE--------------------------LGMVQILTRILSDS--------  275 (398)
Q Consensus       237 ~~~~~a~~a-------L~~Ls~~~~~~~~~v~--------------------------~g~v~~Lv~lL~~~--------  275 (398)
                      +..+..-..       +..+++.++.+..+-.                          ...+..|+++|.+.        
T Consensus       336 dl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~~~~~~~~~  415 (480)
T 1ho8_A          336 ELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNA  415 (480)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCS
T ss_pred             HHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhhcccccccc
Confidence            554432222       2222333333333211                          12578899999631        


Q ss_pred             CcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhc
Q 015939          276 RTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCC  336 (398)
Q Consensus       276 ~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~  336 (398)
                      +.|+.+..-|+.=+..++. .|++|.-+. .-|+=..+.++|...+++++.+|+.++..+..
T Consensus       416 s~d~~~laVAc~Digefvr~~P~gr~i~~-~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~  476 (480)
T 1ho8_A          416 KQEKIIIQVALNDITHVVELLPESIDVLD-KTGGKADIMELLNHSDSRVKYEALKATQAIIG  476 (480)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTHHHHHH-HHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             CCCcceEEeecccHHHHHHHCcchhHHHH-HcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            3477888889988999888 888888665 56999999999999999999999999987654

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=97.65  E-value=7.5e-05  Score=59.74  Aligned_cols=119  Identities=9%  Similarity=0.032  Sum_probs=83.1

Q ss_pred             CcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC
Q 015939          130 GFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD  209 (398)
Q Consensus       130 g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~  209 (398)
                      ..++.|+.+|++ .+..  ++..|+.+|..+.               +. .++.|+..|++.++.+|..|+++|..+.. 
T Consensus        12 ~~~~~l~~~L~~-~~~~--vR~~A~~~L~~~~---------------~~-~~~~L~~~L~d~~~~vR~~A~~aL~~~~~-   71 (131)
T 1te4_A           12 SGLVPRGSHMAD-ENKW--VRRDVSTALSRMG---------------DE-AFEPLLESLSNEDWRIRGAAAWIIGNFQD-   71 (131)
T ss_dssp             ---------CCS-SCCC--SSSSCCSSTTSCS---------------ST-THHHHHHGGGCSCHHHHHHHHHHHGGGCS-
T ss_pred             ccHHHHHHHhcC-CCHH--HHHHHHHHHHHhC---------------ch-HHHHHHHHHcCCCHHHHHHHHHHHHhcCC-
Confidence            567777777776 4433  2355555544321               11 36899999999999999999999987652 


Q ss_pred             chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHH
Q 015939          210 NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKML  289 (398)
Q Consensus       210 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L  289 (398)
                                ...++.|+.+|+++ ++.++..|+++|.++..          ..+++.|+.++.  ++++.++..|..+|
T Consensus        72 ----------~~a~~~L~~~L~d~-~~~VR~~A~~aL~~~~~----------~~a~~~L~~~l~--d~~~~vr~~A~~aL  128 (131)
T 1te4_A           72 ----------ERAVEPLIKLLEDD-SGFVRSGAARSLEQIGG----------ERVRAAMEKLAE--TGTGFARKVAVNYL  128 (131)
T ss_dssp             ----------HHHHHHHHHHHHHC-CTHHHHHHHHHHHHHCS----------HHHHHHHHHHTT--SCCTHHHHHHHHHG
T ss_pred             ----------HHHHHHHHHHHcCC-CHHHHHHHHHHHHHhCc----------HHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence                      45789999999888 89999999999998852          246889999995  47888999988887


Q ss_pred             HH
Q 015939          290 SI  291 (398)
Q Consensus       290 ~~  291 (398)
                      ..
T Consensus       129 ~~  130 (131)
T 1te4_A          129 ET  130 (131)
T ss_dssp             GG
T ss_pred             Hh
Confidence            64

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.58  E-value=0.0018  Score=68.57  Aligned_cols=250  Identities=15%  Similarity=0.147  Sum_probs=162.3

Q ss_pred             HHHHHHHHHHhhhhhh---hhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCCh
Q 015939          105 VDYLVKVAKFATGCEA---NRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCL  181 (398)
Q Consensus       105 ~~al~~L~~l~~~~~~---~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i  181 (398)
                      ..|+..+..++.....   .--++.   +.++.++..+.+ ..  ..+++.|-.++..+...-+.     ..   -..++
T Consensus        70 ~~a~~~~~~~~~~~~~~~~~e~~~~---~~~~~~~~~~~d-k~--~~v~~aa~~~~~~~~~~~~~-----~a---~~~~~  135 (986)
T 2iw3_A           70 ANAMQAVAHIANQSNLSPSVEPYIV---QLVPAICTNAGN-KD--KEIQSVASETLISIVNAVNP-----VA---IKALL  135 (986)
T ss_dssp             HHHHHHHHHHTCTTTCCTTTHHHHH---TTHHHHHHHTTC-SS--HHHHHHHHHHHHHHHHHSCG-----GG---HHHHH
T ss_pred             HHHHHHHHHHHHhcCCCCCcccchH---HHHHHHHHHhcC-Cc--hHHHHHHHHHHHHHHHhCCH-----HH---HHHHH
Confidence            5677777777754321   111222   445666665554 32  34556666565555433221     11   14569


Q ss_pred             HHHHHHHhcC-ChhhHHHHHHHHHHhhcCchhHHHhhc-hhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHH
Q 015939          182 PLFLEILREG-NLDSKIGSIKILDSISLDNESKRRVLE-TENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQL  259 (398)
Q Consensus       182 ~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~  259 (398)
                      |.|+..|+++ .+..+..|..+|..|+...  ..++.. -...||.+...+.+. .+++..+|..++-.+|..-+|+.. 
T Consensus       136 ~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~--~~~~~~~~~~~~p~~~~~~~d~-k~~v~~~~~~~~~~~~~~~~n~d~-  211 (986)
T 2iw3_A          136 PHLTNAIVETNKWQEKIAILAAFSAMVDAA--KDQVALRMPELIPVLSETMWDT-KKEVKAAATAAMTKATETVDNKDI-  211 (986)
T ss_dssp             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHGGGCCCTTT-
T ss_pred             HHHHHHhccccchHHHHHHHHHHHHHHHHh--HHHHHHhccchhcchHhhcccC-cHHHHHHHHHHHHHHHhcCCCcch-
Confidence            9999999876 6899999999999998753  333332 256788888888777 788999999999999864444321 


Q ss_pred             HHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCC
Q 015939          260 VELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYK  339 (398)
Q Consensus       260 v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~  339 (398)
                        ..-||.|++.+.+    |+-+..+...|....-..+.-....  +=.+|.|..-|...+...++.++-++-|||+--.
T Consensus       212 --~~~~~~~~~~~~~----p~~~~~~~~~l~~~tfv~~v~~~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~  283 (986)
T 2iw3_A          212 --ERFIPSLIQCIAD----PTEVPETVHLLGATTFVAEVTPATL--SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVE  283 (986)
T ss_dssp             --GGGHHHHHHHHHC----TTHHHHHHHHHTTCCCCSCCCHHHH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCC
T ss_pred             --hhhHHHHHHHhcC----hhhhHHHHHHhhcCeeEeeecchhH--HHHHHHHHhhhccCcchhheeeEEEEcchhhhcC
Confidence              2368999999953    3446666655555433222222222  1246666666766788899999999999998766


Q ss_pred             ChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          340 DARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       340 ~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      |+......+ -..+|.+-.....-.+|++|+.|..++..|.+
T Consensus       284 ~~~~~~~f~-~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~~  324 (986)
T 2iw3_A          284 DPQVIAPFL-GKLLPGLKSNFATIADPEAREVTLRALKTLRR  324 (986)
T ss_dssp             CHHHHHHHH-TTTHHHHHHHTTTCCSHHHHHHHHHHHHHHHH
T ss_pred             CHHHHhhhh-hhhhhHHHHHhhccCCHHHHHHHHHHHHHHHH
Confidence            555444433 33566666666666789999999999999977

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.44  E-value=0.094  Score=50.62  Aligned_cols=199  Identities=17%  Similarity=0.182  Sum_probs=119.8

Q ss_pred             HHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhh---hhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939           87 VRVWIEKIKSENESENSCVDYLVKVAKFATGCE---ANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE  163 (398)
Q Consensus        87 i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~---~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~  163 (398)
                      +..++..|+.... .+.....+.-+..+...++   ..-..+.+.+.....+...... . .+.-.+..+..++..+...
T Consensus        79 ~~~~l~lL~~~~~-~d~vqYvL~Li~DlL~~~~~~~~~~~~f~~~~~~~~~l~~~~~~-~-dd~~~ll~a~~l~~ll~~~  155 (480)
T 1ho8_A           79 LIPLIHLLSTSDN-EDCKKSVQNLIAELLSSDKYGDDTVKFFQEDPKQLEQLFDVSLK-G-DFQTVLISGFNVVSLLVQN  155 (480)
T ss_dssp             HHHHHHHHHSCCC-HHHHHHHHHHHHHHHHCSSSSHHHHHHHHHCTTHHHHHHHHCSC-S-SHHHHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHhhcCh-HHHHHHHHHHHHHHHhcCcchHHHHHHHhhCcccchHHHHHHhc-c-cchHHHHHHHHHHHHHhcc
Confidence            3456666665443 2345556666667776655   3333444443433333332222 2 2223334555554444322


Q ss_pred             cchHHHhhHhhhccCCChH--HHHHHHhcC-ChhhHHHHHHHHHHhhcCchhHHHhhchhh-HHHHHHHHhccc------
Q 015939          164 NGVKEKLNRLILNTYNCLP--LFLEILREG-NLDSKIGSIKILDSISLDNESKRRVLETEN-LLSALFDYLKLA------  233 (398)
Q Consensus       164 ~~~~~~~~~~il~~~g~i~--~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g-~i~~Lv~lL~~~------  233 (398)
                      ....++....      .+.  -++..|.+. +...+.-++.+|..|...+++|..+....| .+++++.+++..      
T Consensus       156 ~~~~~~~l~~------l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~  229 (480)
T 1ho8_A          156 GLHNVKLVEK------LLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLA  229 (480)
T ss_dssp             TTCCHHHHHH------HHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC----
T ss_pred             CCccHhHHHH------HhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhccccc
Confidence            1110001111      112  344555552 445566799999999999999999986334 577777655421      


Q ss_pred             ----------cCHHHHHHHHHHHHHhcCCcchHHHHHHcCCh--HHHHHHhcccCcchhhHHHHHHHHHHHhCC
Q 015939          234 ----------EDQALNDAILSILITLSVYRSVKAQLVELGMV--QILTRILSDSRTQILTVEKSIKMLSIVATC  295 (398)
Q Consensus       234 ----------~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v--~~Lv~lL~~~~~~~~~~~~al~~L~~La~~  295 (398)
                                .+.+.+-.++-++|-|+..++....+...+..  +.|+++++. +..+++.+-++.+|+||...
T Consensus       230 ~~~~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~-s~KEKvvRv~la~l~Nll~~  302 (480)
T 1ho8_A          230 TRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKI-TIKEKVSRLCISIILQCCST  302 (480)
T ss_dssp             ---------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHH-CCSHHHHHHHHHHHHHTTSS
T ss_pred             cccccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHh-hccchhHHHHHHHHHHHhcc
Confidence                      13566788999999999999888888877754  677788873 56789999999999998874

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.44  E-value=9.3e-05  Score=54.85  Aligned_cols=45  Identities=11%  Similarity=0.065  Sum_probs=37.6

Q ss_pred             cccCccccCCCc-eecCCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939           15 RCPISLDVMKSP-VSLCTGVTYDRSSIQHWLESGHDTCPATMQILS   59 (398)
Q Consensus        15 ~Cpi~~~~~~dP-v~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~   59 (398)
                      .||+|.-.+..= .++||+|.||..|+..|..++..+||.|+.++.
T Consensus         3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~   48 (101)
T 3vk6_A            3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQ   48 (101)
T ss_dssp             BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCS
T ss_pred             ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeee
Confidence            478887776653 467999999999999999888899999998754

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.43  E-value=0.00017  Score=51.30  Aligned_cols=48  Identities=15%  Similarity=0.313  Sum_probs=38.1

Q ss_pred             ccccCccccCCCceec-CCCcccchhHHHHHHhc-CCCCCCcccccCCCC
Q 015939           14 FRCPISLDVMKSPVSL-CTGVTYDRSSIQHWLES-GHDTCPATMQILSTK   61 (398)
Q Consensus        14 ~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~-~~~~CP~~~~~l~~~   61 (398)
                      -.|+||++++..=+.- .|||.|=..||.+||.. +..+||.|+..+...
T Consensus        16 ~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~   65 (74)
T 2ct0_A           16 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE   65 (74)
T ss_dssp             CBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSC
T ss_pred             CcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCC
Confidence            4799999999743332 69999999999999975 247899999887643

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=97.39  E-value=0.00018  Score=49.01  Aligned_cols=48  Identities=19%  Similarity=0.334  Sum_probs=39.8

Q ss_pred             CcccccCccccCCCceecCCCc-----ccchhHHHHHHh-cCCCCCCcccccCC
Q 015939           12 NLFRCPISLDVMKSPVSLCTGV-----TYDRSSIQHWLE-SGHDTCPATMQILS   59 (398)
Q Consensus        12 ~~~~Cpi~~~~~~dPv~~~~g~-----~~~r~~i~~~~~-~~~~~CP~~~~~l~   59 (398)
                      +.-.|.||.+-..+|.++||.+     .|=+.|+.+|+. .++.+||+|+.++.
T Consensus         5 ~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            5 DVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             SCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence            3457999999889999999653     688999999996 46789999998765

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=97.31  E-value=0.004  Score=65.87  Aligned_cols=263  Identities=13%  Similarity=0.105  Sum_probs=170.6

Q ss_pred             HHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchH
Q 015939           88 RVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVK  167 (398)
Q Consensus        88 ~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~  167 (398)
                      ..+++.+..++.+  ++..+...+..+...+...  ..... ++++.|...+....+   .  +.|+.++..++......
T Consensus        17 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~k~~---~--~~a~~~~~~~~~~~~~~   86 (986)
T 2iw3_A           17 EELFQKLSVATAD--NRHEIASEVASFLNGNIIE--HDVPE-HFFGELAKGIKDKKT---A--ANAMQAVAHIANQSNLS   86 (986)
T ss_dssp             HHHHHHHTTCCTT--THHHHHHHHHHHHTSSCSS--SSCCH-HHHHHHHHHHTSHHH---H--HHHHHHHHHHTCTTTCC
T ss_pred             HHHHhhccccchh--HHHHHHHHHHHHHhccccc--cccch-hHHHHHHHHHhccCC---H--HHHHHHHHHHHHhcCCC
Confidence            3355555544433  6777888888876543222  22224 677777777766111   1  88888888888544321


Q ss_pred             HHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHH
Q 015939          168 EKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSIL  246 (398)
Q Consensus       168 ~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL  246 (398)
                      ...-.. +.  +.++.+++........+|..|..++..|... +.+..     ..++|.|+..|++......+..|+.+|
T Consensus        87 ~~~e~~-~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~a~-----~~~~~~~~~~~~~~~kw~~k~~~l~~~  158 (986)
T 2iw3_A           87 PSVEPY-IV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPVAI-----KALLPHLTNAIVETNKWQEKIAILAAF  158 (986)
T ss_dssp             TTTHHH-HH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGGGH-----HHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_pred             CCcccc-hH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHHHH-----HHHHHHHHHHhccccchHHHHHHHHHH
Confidence            111122 22  5678888877777788998888888877655 22221     357899999997764578999999999


Q ss_pred             HHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHH
Q 015939          247 ITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTARED  326 (398)
Q Consensus       247 ~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~  326 (398)
                      ..|+......-...=...||.+.+.+  .+..+++...|..++..+|..-.|+.    -+..||.||+.+.+.+.  ...
T Consensus       159 ~~~~~~~~~~~~~~~~~~~p~~~~~~--~d~k~~v~~~~~~~~~~~~~~~~n~d----~~~~~~~~~~~~~~p~~--~~~  230 (986)
T 2iw3_A          159 SAMVDAAKDQVALRMPELIPVLSETM--WDTKKEVKAAATAAMTKATETVDNKD----IERFIPSLIQCIADPTE--VPE  230 (986)
T ss_dssp             HHHHHHSHHHHHHHHHHHHHHHHHHT--TCSSHHHHHHHHHHHHHHGGGCCCTT----TGGGHHHHHHHHHCTTH--HHH
T ss_pred             HHHHHHhHHHHHHhccchhcchHhhc--ccCcHHHHHHHHHHHHHHHhcCCCcc----hhhhHHHHHHHhcChhh--hHH
Confidence            99986432222222245788888888  56889999999999999987433332    13579999999986533  455


Q ss_pred             HHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          327 AVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       327 a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      ++..|..-+.-..   +..-.+ +=.+|.|.+-|... +..+|++++-+..+|.+
T Consensus       231 ~~~~l~~~tfv~~---v~~~~l-~~~~p~l~r~l~~~-~~~~~r~~~~~~~n~~~  280 (986)
T 2iw3_A          231 TVHLLGATTFVAE---VTPATL-SIMVPLLSRGLNER-ETGIKRKSAVIIDNMCK  280 (986)
T ss_dssp             HHHHHTTCCCCSC---CCHHHH-HHHHHHHHHHHTSS-SHHHHHHHHHHHHHHHT
T ss_pred             HHHHhhcCeeEee---ecchhH-HHHHHHHHhhhccC-cchhheeeEEEEcchhh
Confidence            5666655444321   111111 11466677777655 67889999999999988

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.27  E-value=0.021  Score=47.71  Aligned_cols=177  Identities=16%  Similarity=0.125  Sum_probs=90.3

Q ss_pred             cCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC-Ccc
Q 015939          177 TYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV-YRS  254 (398)
Q Consensus       177 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~  254 (398)
                      +..++..++.+|+.+-+.++.+|..++..++.. ++.-+      -.+..|+.+++......+....++++..++. .++
T Consensus        30 d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~e------pl~~kL~vm~~ksEaIpltqeIa~a~G~la~i~Pe  103 (253)
T 2db0_A           30 DESVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYE------PMLKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKPE  103 (253)
T ss_dssp             CHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHH------HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCHH
T ss_pred             hHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHH------HHHHHHHHHHhhcccCchHHHHHHHHhHHHHhCHH
Confidence            456788888888888888888998888888876 33322      2345566666554355566666666666653 222


Q ss_pred             hHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHH
Q 015939          255 VKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWS  333 (398)
Q Consensus       255 ~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~  333 (398)
                      ....     .||.+..-.+  -+++.++-+-..+|..++. +|+--..+.      .-+..++.+.+...+-.|+..+..
T Consensus       104 ~v~~-----vVp~lfanyr--igd~kikIn~~yaLeeIaranP~l~~~v~------rdi~smltskd~~Dkl~aLnFi~a  170 (253)
T 2db0_A          104 LVKS-----MIPVLFANYR--IGDEKTKINVSYALEEIAKANPMLMASIV------RDFMSMLSSKNREDKLTALNFIEA  170 (253)
T ss_dssp             HHHH-----HHHHHHHHSC--CCSHHHHHHHHHHHHHHHHHCHHHHHHHH------HHHHHHTSCSSHHHHHHHHHHHHT
T ss_pred             HHHh-----hHHHHHHHHh--cCCccceecHHHHHHHHHHhChHHHHHHH------HHHHHHhcCCChHHHHHHHHHHHH
Confidence            2221     3344444432  2355555555555555544 333322222      223344444444444444444444


Q ss_pred             hhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Q 015939          334 MCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLG  380 (398)
Q Consensus       334 l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~  380 (398)
                      +.-++    .+..   ...+|+|..+|..+ ++.+|-.|...|-.++
T Consensus       171 lGen~----~~yv---~PfLprL~aLL~D~-deiVRaSaVEtL~~lA  209 (253)
T 2db0_A          171 MGENS----FKYV---NPFLPRIINLLHDG-DEIVRASAVEALVHLA  209 (253)
T ss_dssp             CCTTT----HHHH---GGGHHHHHGGGGCS-SHHHHHHHHHHHHHHH
T ss_pred             HhccC----cccc---CcchHHHHHHHcCc-chhhhHHHHHHHHHHH
Confidence            43211    1111   23444444444433 4444444444444443

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=97.16  E-value=0.084  Score=44.13  Aligned_cols=199  Identities=12%  Similarity=0.155  Sum_probs=137.0

Q ss_pred             chhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCC
Q 015939          101 ENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNC  180 (398)
Q Consensus       101 ~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~  180 (398)
                      |-.+..|+..|..+++..++...-      .+..|+.+++. + .....-....+++..++.-.++      . +  .++
T Consensus        46 wtV~kNAl~vi~~i~~~~~el~ep------l~~kL~vm~~k-s-EaIpltqeIa~a~G~la~i~Pe------~-v--~~v  108 (253)
T 2db0_A           46 WTVVKNAISIIMVIAKTREDLYEP------MLKKLFSLLKK-S-EAIPLTQEIAKAFGQMAKEKPE------L-V--KSM  108 (253)
T ss_dssp             HHHHHHHHHHHHHHHTTCGGGHHH------HHHHHHHHHHH-C-CSHHHHHHHHHHHHHHHHHCHH------H-H--HHH
T ss_pred             HHHHHhHHHHHHHHHHHhHHHHHH------HHHHHHHHHhh-c-ccCchHHHHHHHHhHHHHhCHH------H-H--Hhh
Confidence            567888988888888765543322      34556777766 2 2334445666777777654332      1 1  245


Q ss_pred             hHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHH
Q 015939          181 LPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQL  259 (398)
Q Consensus       181 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~  259 (398)
                      +|.+..=..-|++.++.+...+|..++.. ++..      .+++..+..+|.++ +..-+-.|+..+..+..+.   ..-
T Consensus       109 Vp~lfanyrigd~kikIn~~yaLeeIaranP~l~------~~v~rdi~smltsk-d~~Dkl~aLnFi~alGen~---~~y  178 (253)
T 2db0_A          109 IPVLFANYRIGDEKTKINVSYALEEIAKANPMLM------ASIVRDFMSMLSSK-NREDKLTALNFIEAMGENS---FKY  178 (253)
T ss_dssp             HHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHHHH------HHHHHHHHHHTSCS-SHHHHHHHHHHHHTCCTTT---HHH
T ss_pred             HHHHHHHHhcCCccceecHHHHHHHHHHhChHHH------HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhccC---ccc
Confidence            77777777888999999999999999876 3322      45677888999988 7667777777777765443   222


Q ss_pred             HHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhc
Q 015939          260 VELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCC  336 (398)
Q Consensus       260 v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~  336 (398)
                      +.- -+|.|+.+|  .+.+.-++..|..+|.+++. ++.-|..+.       ..++-+.+.|..++......|..+..
T Consensus       179 v~P-fLprL~aLL--~D~deiVRaSaVEtL~~lA~~npklRkii~-------~kl~e~~D~S~lv~~~V~egL~rl~l  246 (253)
T 2db0_A          179 VNP-FLPRIINLL--HDGDEIVRASAVEALVHLATLNDKLRKVVI-------KRLEELNDTSSLVNKTVKEGISRLLL  246 (253)
T ss_dssp             HGG-GHHHHHGGG--GCSSHHHHHHHHHHHHHHHTSCHHHHHHHH-------HHHHHCCCSCHHHHHHHHHHHHHHHH
T ss_pred             cCc-chHHHHHHH--cCcchhhhHHHHHHHHHHHHcCHHHHHHHH-------HHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence            222 578899999  45778888899999999998 556554443       24455667888888877777777664

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=96.98  E-value=0.00038  Score=52.96  Aligned_cols=33  Identities=12%  Similarity=0.173  Sum_probs=29.1

Q ss_pred             CcccccCccc-cCCCcee--cCCCcccchhHHHHHH
Q 015939           12 NLFRCPISLD-VMKSPVS--LCTGVTYDRSSIQHWL   44 (398)
Q Consensus        12 ~~~~Cpi~~~-~~~dPv~--~~~g~~~~r~~i~~~~   44 (398)
                      +++.|++|.+ ++.+||.  +.|||+||+.|++.+.
T Consensus         2 ee~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~h   37 (101)
T 2jun_A            2 EKVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKATH   37 (101)
T ss_dssp             CCCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHHS
T ss_pred             CCCCCcCCCCCCCCCceEECCcCChHHhHHHCHHHh
Confidence            4678999996 5899999  9999999999999943

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.97  E-value=0.26  Score=51.74  Aligned_cols=175  Identities=9%  Similarity=0.021  Sum_probs=116.6

Q ss_pred             CCChHHHHHHHhcC-ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchH
Q 015939          178 YNCLPLFLEILREG-NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVK  256 (398)
Q Consensus       178 ~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~  256 (398)
                      ...++.+++.|... ++.+|..++.++..-.....+       ..+|+.|+..+.+..+..+++.|+.+|.-+...++  
T Consensus       540 ~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn-------~~aIq~LL~~~~~d~~d~VRraAViaLGlI~~g~~--  610 (963)
T 4ady_A          540 QELADDLITKMLASDESLLRYGGAFTIALAYAGTGN-------NSAVKRLLHVAVSDSNDDVRRAAVIALGFVLLRDY--  610 (963)
T ss_dssp             GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCC-------HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTSSSC--
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHhccCCcHHHHHHHHHHHHhhccCCH--
Confidence            34577888888754 777777666666533322222       34567777777665577899999999998876553  


Q ss_pred             HHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhc
Q 015939          257 AQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCC  336 (398)
Q Consensus       257 ~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~  336 (398)
                            ..++.++++|. .+.++.++..+..+|..++..... ..      ++..|..++.+.+..++..|+.+|..+..
T Consensus       611 ------e~v~rlv~~L~-~~~d~~VR~gAalALGli~aGn~~-~~------aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~  676 (963)
T 4ady_A          611 ------TTVPRIVQLLS-KSHNAHVRCGTAFALGIACAGKGL-QS------AIDVLDPLTKDPVDFVRQAAMIALSMILI  676 (963)
T ss_dssp             ------SSHHHHTTTGG-GCSCHHHHHHHHHHHHHHTSSSCC-HH------HHHHHHHHHTCSSHHHHHHHHHHHHHHST
T ss_pred             ------HHHHHHHHHHH-hcCCHHHHHHHHHHHHHhccCCCc-HH------HHHHHHHHccCCCHHHHHHHHHHHHHHhc
Confidence                  35778888776 356899999999999999763322 22      34456677778999999999999999887


Q ss_pred             cCCCh---hHHHHHHhcCCHHHHHHHHhh-cCcHHHHHHHHHHHHHHhc
Q 015939          337 VYKDA---RVKEAVVNSNGLTKLLLVMQS-ENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       337 ~~~~~---~~~~~~~~~g~~~~Ll~~l~~-~~~~~~k~~A~~lL~~l~~  381 (398)
                      ...+.   ++.      +.+..|...... +.++.++-.|.-....+..
T Consensus       677 gtnna~~~rva------~~l~~L~~~~~dk~~d~~~~fga~iAqGll~a  719 (963)
T 4ady_A          677 QQTEKLNPQVA------DINKNFLSVITNKHQEGLAKFGACVAQGIMNA  719 (963)
T ss_dssp             TCCTTTCTTHH------HHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTT
T ss_pred             CCccccchHHH------HHHHHHHHHHhcccccHHHHHHHHHHHHHHhc
Confidence            64322   221      233445555543 3356677777666666544

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=96.74  E-value=0.02  Score=56.06  Aligned_cols=246  Identities=11%  Similarity=0.106  Sum_probs=154.4

Q ss_pred             HHHHHHHcCCCCchhHHHHHHHHHHHhhhhhh--hhhhhhhcCCcHHHHHHHh--hhcc----C-CcHHHHHHHHHHHHh
Q 015939           89 VWIEKIKSENESENSCVDYLVKVAKFATGCEA--NRRFLASYGGFVEAVFGVL--NRKR----R-SEIAVLESAVRVLNL  159 (398)
Q Consensus        89 ~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~--~r~~i~~~~g~v~~L~~lL--~~~~----~-~~~~~~~~al~~L~~  159 (398)
                      .|+..|-++  .||.|--|+..|+.+.+....  .|..-... +..-.|+.+|  ++.+    | .-..++|.|..+|..
T Consensus       178 ~L~~DLFdp--~WEiRHGAALGLREILR~hG~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa  254 (800)
T 3oc3_A          178 QISDNLLSY--EWYKRHGAFLAFAAMFSEIDNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR  254 (800)
T ss_dssp             HHHHHTTCS--SHHHHHHHHHHHHHHHHHCC----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHhcCc--chhhhhHHHHHHHHHHHHhccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence            344444443  388998899999988766431  12211111 2333334333  2221    1 123567888888888


Q ss_pred             hhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHH
Q 015939          160 IVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALN  239 (398)
Q Consensus       160 l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~  239 (398)
                      + ..-+.          +..++..++..+.....+++..+...|..+      ++.+..-.++++.++.-|++. +.+++
T Consensus       255 L-~hLp~----------e~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~-DDDVR  316 (800)
T 3oc3_A          255 I-YPLIG----------PNDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSP-DEDIK  316 (800)
T ss_dssp             H-TTTSC----------SCCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCS-SHHHH
T ss_pred             H-HhCCh----------hHHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCc-ccHHH
Confidence            7 44332          124455555556777999999999999999      222222368899999999998 88999


Q ss_pred             HHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhcc
Q 015939          240 DAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKV  319 (398)
Q Consensus       240 ~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~  319 (398)
                      ..|+.+|.-++ .++...     ..+..+.+.|.+.++=.......+..|..|+..+.   ....++..||.|.-++...
T Consensus       317 AVAAetLiPIA-~p~~l~-----~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~---~a~~dp~LVPRL~PFLRHt  387 (800)
T 3oc3_A          317 LLSAELLCHFP-ITDSLD-----LVLEKCWKNIESEELISVSKTSNLSLLTKIYRENP---ELSIPPERLKDIFPCFTSP  387 (800)
T ss_dssp             HHHHHHHTTSC-CSSTHH-----HHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCT---TCCCCSGGGGGTGGGGTCS
T ss_pred             HHHHHHhhhhc-chhhHH-----HHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCc---ccccChHHHHHHHhhhcCC
Confidence            99999999998 222222     24556667775432223445566777777777553   2222457888898989989


Q ss_pred             ChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015939          320 GKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVK  377 (398)
Q Consensus       320 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~  377 (398)
                      -..++..++.+|..+..    ......         +.+-+-...++.+++.+..+.+
T Consensus       388 ITSVR~AVL~TL~tfL~----~~~LRL---------IFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          388 VPEVRTSILNMVKNLSE----ESIDFL---------VAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             SHHHHHHHHHHTTTCCC----HHHHHH---------HHHHHHHCSCHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHh----hhHHHH---------HHHHHHhCCcHHHHHHHHHHHH
Confidence            99999999999977661    233222         2222223446788888877765

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=96.72  E-value=0.17  Score=53.19  Aligned_cols=166  Identities=11%  Similarity=0.035  Sum_probs=105.0

Q ss_pred             hHHHHHHHhcC-ChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHH
Q 015939          181 LPLFLEILREG-NLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQL  259 (398)
Q Consensus       181 i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~  259 (398)
                      +..|+..+.++ +..++..++..|..+....         ...++.+++.|....++-++..++.++.--..+..|..  
T Consensus       509 i~~LL~~~~e~~~e~vrR~aalgLGll~~g~---------~e~~~~li~~L~~~~dp~vRygaa~alglAyaGTGn~~--  577 (963)
T 4ady_A          509 IHDMFTYSQETQHGNITRGLAVGLALINYGR---------QELADDLITKMLASDESLLRYGGAFTIALAYAGTGNNS--  577 (963)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC---------GGGGHHHHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHH--
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHhhhCCC---------hHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHH--
Confidence            45555555433 5666776777776665432         34456777777765467677766666654433333322  


Q ss_pred             HHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHh-ccChhHHHHHHHHHHHhhccC
Q 015939          260 VELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVM-KVGKTAREDAVVVIWSMCCVY  338 (398)
Q Consensus       260 v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~-~~~~~~~~~a~~~L~~l~~~~  338 (398)
                          +|..|+..+. .+.+..+++.|...|..+...+.         ..++.++.++. ..++.++..|+.+|..++..+
T Consensus       578 ----aIq~LL~~~~-~d~~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn  643 (963)
T 4ady_A          578 ----AVKRLLHVAV-SDSNDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGK  643 (963)
T ss_dssp             ----HHHHHHHHHH-HCSCHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSS
T ss_pred             ----HHHHHHHHhc-cCCcHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCC
Confidence                4566777765 24567788888888888765331         24566666554 588999999999999988754


Q ss_pred             CChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          339 KDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       339 ~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      ++.+         ++..|..++ .+.+..+|+.|...|..+..
T Consensus       644 ~~~~---------aid~L~~L~-~D~d~~Vrq~Ai~ALG~Ig~  676 (963)
T 4ady_A          644 GLQS---------AIDVLDPLT-KDPVDFVRQAAMIALSMILI  676 (963)
T ss_dssp             CCHH---------HHHHHHHHH-TCSSHHHHHHHHHHHHHHST
T ss_pred             CcHH---------HHHHHHHHc-cCCCHHHHHHHHHHHHHHhc
Confidence            4222         233333333 45578888888888887765

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=96.70  E-value=0.01  Score=55.65  Aligned_cols=235  Identities=10%  Similarity=0.063  Sum_probs=104.6

Q ss_pred             cccHHHHHHHHHHHhhC-CCCH---HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHh
Q 015939           64 VPNLTLHRLIAHWSHQL-TVPE---QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVL  139 (398)
Q Consensus        64 ~~n~~l~~~i~~~~~~~-p~p~---~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL  139 (398)
                      .+|..+|+++=.+.... +.|.   -.+..+.+.+.+++.-  .+-.|+..+..+...  +    +.+  ...+.+-+.|
T Consensus        79 s~d~~lKrLvYLyl~~~~~~~~e~iLv~Nsl~kDl~~~N~~--iR~lALRtL~~I~~~--~----m~~--~l~~~lk~~L  148 (355)
T 3tjz_B           79 SNDPTLRRMCYLTIKEMSCIAEDVIIVTSSLTKDMTGKEDS--YRGPAVRALCQITDS--T----MLQ--AIERYMKQAI  148 (355)
T ss_dssp             CCCHHHHHHHHHHHHHHTTTSSCGGGGHHHHHHHHHSSCHH--HHHHHHHHHHHHCCT--T----THH--HHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCCcHh--HHHHHHHHHhcCCCH--H----HHH--HHHHHHHHHc
Confidence            56778888876554322 1221   1245566777776543  455566666665432  1    111  2233344444


Q ss_pred             hhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchh-HHHhh-
Q 015939          140 NRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNES-KRRVL-  217 (398)
Q Consensus       140 ~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~-~~~i~-  217 (398)
                      .+   .++-++..|+-+...+....++        ++ .+++..+-+++.+.++-++.+|..+|..+...+.. -..+. 
T Consensus       149 ~d---~~pyVRk~A~l~~~kL~~~~pe--------~v-~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~~a~~kLv~  216 (355)
T 3tjz_B          149 VD---KVPSVSSSALVSSLHLLKCSFD--------VV-KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDRLAVSKMIS  216 (355)
T ss_dssp             TC---SSHHHHHHHHHHHHHHTTTCHH--------HH-HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CC---CCHHHHHHHHHHHHHHhccCHH--------HH-HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhchHHHHHHHH
Confidence            44   4455668888888888766554        11 26899999999888999999999999988875421 00000 


Q ss_pred             ---c---------------------------hhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHH
Q 015939          218 ---E---------------------------TENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQI  267 (398)
Q Consensus       218 ---~---------------------------~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~  267 (398)
                         .                           ....++.|..+|++. ++.+.-.|++++..+...+..   . -.-++..
T Consensus       217 ~l~~~~l~~~~~q~~llr~l~~~~~~d~~~~~~~~~~~l~~~L~~~-~~aVvyEa~k~I~~l~~~~~~---~-~~~a~~~  291 (355)
T 3tjz_B          217 KFTRHGLKSPFAYCMMIRVASRQLEDEDGSRDSPLFDFIESCLRNK-HEMVVYEAASAIVNLPGCSAK---E-LAPAVSV  291 (355)
T ss_dssp             HHHSSCCSCHHHHHHHHHHHTCC-----------------CCCCCS-SHHHHHHHHHHHTC---------------CCCT
T ss_pred             HHhcCCCcChHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHcCC-ChHHHHHHHHHHHhccCCCHH---H-HHHHHHH
Confidence               0                           011222233333333 455666666666666442211   1 1234555


Q ss_pred             HHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHH
Q 015939          268 LTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWS  333 (398)
Q Consensus       268 Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~  333 (398)
                      |..+|+  ++++.++-.|+..|..+.. +|+..+      .+-..+..++.+++......|+..|..
T Consensus       292 L~~fLs--s~d~niryvaLr~L~~l~~~~P~~v~------~~n~~ie~li~d~n~sI~t~Aittllk  350 (355)
T 3tjz_B          292 LQLFCS--SPKAALRYAAVRTLNKVAMKHPSAVT------ACNLDLENLVTDANRSIATLAITTLLK  350 (355)
T ss_dssp             HHHHHH--SSSSSSHHHHHHCC---------------------------------------------
T ss_pred             HHHHHc--CCCchHHHHHHHHHHHHHHHCcHHHH------HHHHHHHHHccCCcHhHHHHHHHHhhh
Confidence            666663  3567777777777766665 222111      123345556666666666666666543

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.67  E-value=0.034  Score=48.94  Aligned_cols=151  Identities=19%  Similarity=0.185  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhcc--CCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChH
Q 015939          105 VDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKR--RSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLP  182 (398)
Q Consensus       105 ~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~--~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~  182 (398)
                      ..|+.-++.+++ +++.|..+.++ +..-.|-.+|...+  .+-.-++-.+++++..+...++.  +.... +...+++|
T Consensus        74 cnaLaLlQcvAs-hpetr~~Fl~a-~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~--eVi~f-LL~tEiip  148 (268)
T 2fv2_A           74 CNALALLQCVAS-HPETRSAFLAA-HIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQ--EVINF-LLTTEIIP  148 (268)
T ss_dssp             HHHHHHHHHHHH-CTTTHHHHHHT-TGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCH--HHHHH-HHHTTHHH
T ss_pred             HHHHHHHHHHHc-CcchhhHHHHc-cchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcH--HHHHH-HHhhhHHH
Confidence            556767777775 58899999998 88888888887632  11234456788888888876543  22233 45788999


Q ss_pred             HHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhh-------HHHHHHHHhccccCHHHHHHHHHHHHHhcCCcch
Q 015939          183 LFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETEN-------LLSALFDYLKLAEDQALNDAILSILITLSVYRSV  255 (398)
Q Consensus       183 ~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g-------~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~  255 (398)
                      ..++.+..|+.-.|.-|..++..+..++..-..+..+..       ++..+|.-|....++.+.++..++-..|+.+...
T Consensus       149 lCLrime~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~ra  228 (268)
T 2fv2_A          149 LCLRIMESGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNPRA  228 (268)
T ss_dssp             HHHHHHHHSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSHHH
T ss_pred             HHHHHHhhccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCHHH
Confidence            999999999999999999999999888866666654333       3333333333334889999999999999999887


Q ss_pred             HHHHH
Q 015939          256 KAQLV  260 (398)
Q Consensus       256 ~~~~v  260 (398)
                      +..+-
T Consensus       229 r~aL~  233 (268)
T 2fv2_A          229 REALR  233 (268)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77664

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=96.63  E-value=0.00034  Score=64.08  Aligned_cols=47  Identities=19%  Similarity=0.428  Sum_probs=37.1

Q ss_pred             cccccCccccCCC----cee----cCCCcccchhHHHHHHhc--C-C-------CCCCcccccCC
Q 015939           13 LFRCPISLDVMKS----PVS----LCTGVTYDRSSIQHWLES--G-H-------DTCPATMQILS   59 (398)
Q Consensus        13 ~~~Cpi~~~~~~d----Pv~----~~~g~~~~r~~i~~~~~~--~-~-------~~CP~~~~~l~   59 (398)
                      ..-|+||..++.+    |-.    .+|||.|-..||.+|+..  + +       ..||.|++++.
T Consensus       308 ~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs  372 (381)
T 3k1l_B          308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS  372 (381)
T ss_dssp             CCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred             CccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence            3469999999998    533    369999999999999963  1 1       35999998765

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=96.31  E-value=0.052  Score=49.73  Aligned_cols=193  Identities=10%  Similarity=0.051  Sum_probs=113.7

Q ss_pred             hHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchh---hHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHH
Q 015939          181 LPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETE---NLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKA  257 (398)
Q Consensus       181 i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~---g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~  257 (398)
                      +..+.+++ +=+.+.+.-+..+++.+..++.....+....   .++..+...+.+...+..+--+++++.|+-.+...+.
T Consensus       105 l~~l~kil-~WP~~~~fPvLDLlRl~~l~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~~  183 (304)
T 3ebb_A          105 LQILWKAI-NCPEDIVFPALDILRLSIKHPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQK  183 (304)
T ss_dssp             HHHHHHHH-TSCTTTCHHHHHHHHHHTTSHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHHH
T ss_pred             HHHHHHHH-cCCHHhHHHHHHHHHHHHcCccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhHH
Confidence            34444444 2244555566667776666665555444311   2333444555444456678899999999988888887


Q ss_pred             HHHHcCChHHHHHHhcc--cCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhc-cChhHHHHHHHHHHHh
Q 015939          258 QLVELGMVQILTRILSD--SRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMK-VGKTAREDAVVVIWSM  334 (398)
Q Consensus       258 ~~v~~g~v~~Lv~lL~~--~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~-~~~~~~~~a~~~L~~l  334 (398)
                      .+...  ...+++.+.+  .+.+..++..+..++.|++.........-+....+..+..++.. .+.++.-.++.+|.++
T Consensus       184 ~l~~~--~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~EalyR~LvALGtL  261 (304)
T 3ebb_A          184 LMMSQ--RESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATFRLLVALGTL  261 (304)
T ss_dssp             HHHHT--HHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred             HHHHH--HHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence            77642  2444444421  23466788888889999887321100000001133344444543 5778888888899998


Q ss_pred             hccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 015939          335 CCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKV  378 (398)
Q Consensus       335 ~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~  378 (398)
                      ...  +.+.+..+...|+-..+-...+....+++.++|..+|..
T Consensus       262 ~~~--~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~~~~~~~~  303 (304)
T 3ebb_A          262 ISD--DSNAVQLAKSLGVDSQIKKYSSVSEPAKVSECCRFILNL  303 (304)
T ss_dssp             HTT--CHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHHHHHHHTT
T ss_pred             HhC--ChhHHHHHHHcCHHHHHHHHHhCCCchhHHHHHHHHHHh
Confidence            864  345555554556555555555554578899999888764

>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=96.18  E-value=0.0033  Score=58.44  Aligned_cols=63  Identities=17%  Similarity=0.235  Sum_probs=52.1

Q ss_pred             cccccCccccCCCceecC-CCcc--cchhHHHHHHhc-CCCCCCcccccCCCCCCcccHHHHHHHHH
Q 015939           13 LFRCPISLDVMKSPVSLC-TGVT--YDRSSIQHWLES-GHDTCPATMQILSTKEFVPNLTLHRLIAH   75 (398)
Q Consensus        13 ~~~Cpi~~~~~~dPv~~~-~g~~--~~r~~i~~~~~~-~~~~CP~~~~~l~~~~l~~n~~l~~~i~~   75 (398)
                      .+.|||+...|..|+--. |.|.  |+...+-....+ +.-.||+|++.+...++..+.-+.+.+..
T Consensus       249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~~~dL~ID~~~~~IL~~  315 (371)
T 3i2d_A          249 SLQCPISYTRMKYPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIALENLAISEFVDDILQN  315 (371)
T ss_dssp             ESBCTTTSSBCSSEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCCGGGEEEBHHHHHHHTT
T ss_pred             eecCCCccccccccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccCHHHeeEcHHHHHHHHh
Confidence            468999999999999976 9998  888888777643 44579999999999999998877766554

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=96.17  E-value=0.19  Score=44.16  Aligned_cols=174  Identities=14%  Similarity=0.177  Sum_probs=124.9

Q ss_pred             HHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccc----cCHHHHHHHHHHHHHhcCCc--chHHHHHHcCChHHHH
Q 015939          196 KIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLA----EDQALNDAILSILITLSVYR--SVKAQLVELGMVQILT  269 (398)
Q Consensus       196 ~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~----~~~~~~~~a~~aL~~Ls~~~--~~~~~~v~~g~v~~Lv  269 (398)
                      ..+|...|..++.+++.|..+.+ ....-.|..+|...    .-+-++-.+++++..|...+  +....+.+.+.||..+
T Consensus        73 VcnaLaLlQcvAshpetr~~Fl~-a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL  151 (268)
T 2fv2_A           73 VCNALALLQCVASHPETRSAFLA-AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL  151 (268)
T ss_dssp             HHHHHHHHHHHHHCTTTHHHHHH-TTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHcCcchhhHHHH-ccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence            35777888899999999999887 67766677777654    12346789999999998644  3455556889999999


Q ss_pred             HHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHH--------hccChhHHHHHHHHHHHhhccCCCh
Q 015939          270 RILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERV--------MKVGKTAREDAVVVIWSMCCVYKDA  341 (398)
Q Consensus       270 ~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l--------~~~~~~~~~~a~~~L~~l~~~~~~~  341 (398)
                      +.+.  .+++-.+..|.-++..+-.++.|...+...+.-+-.+...|        +..++..-++.+++-..|+.+   +
T Consensus       152 rime--~GselSKtvAtfIlqKIL~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn---~  226 (268)
T 2fv2_A          152 RIME--SGSELSKTVATFILQKILLDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDN---P  226 (268)
T ss_dssp             HHHH--HSCHHHHHHHHHHHHHHHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTS---H
T ss_pred             HHHh--hccHHHHHHHHHHHHHHhccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcC---H
Confidence            9995  36777888899999999999999888865443222222222        237888899999999999964   5


Q ss_pred             hHHHHHHh-------cCCHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Q 015939          342 RVKEAVVN-------SNGLTKLLLVMQSENEGIVRKMCGDLVKVLG  380 (398)
Q Consensus       342 ~~~~~~~~-------~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~  380 (398)
                      +.++.+.+       .|.+..++   + + ++.+|+.=..++.++.
T Consensus       227 rar~aL~~~LP~~Lrd~tf~~~l---~-~-D~~~k~~l~qLl~n~~  267 (268)
T 2fv2_A          227 RAREALRQCLPDQLKDTTFAQVL---K-D-DTTTKRWLAQLVKNLQ  267 (268)
T ss_dssp             HHHHHHHHHSCGGGTSSTTHHHH---T-S-CHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHHhCcHHhhChHHHHHH---h-c-CHHHHHHHHHHHHhcC
Confidence            55554443       45555444   2 3 6788887777776653

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=95.90  E-value=0.93  Score=42.28  Aligned_cols=102  Identities=11%  Similarity=0.033  Sum_probs=76.2

Q ss_pred             ChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHH
Q 015939          180 CLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQL  259 (398)
Q Consensus       180 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~  259 (398)
                      ++..+.+=+++.++-+|..|.++|+++...+     +.  ....+.+-+.|.+. ++-+++.|+-+.+.|......   +
T Consensus       105 v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~-----m~--~~l~~~lk~~L~d~-~pyVRk~A~l~~~kL~~~~pe---~  173 (355)
T 3tjz_B          105 VTSSLTKDMTGKEDSYRGPAVRALCQITDST-----ML--QAIERYMKQAIVDK-VPSVSSSALVSSLHLLKCSFD---V  173 (355)
T ss_dssp             GHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT-----TH--HHHHHHHHHHHTCS-SHHHHHHHHHHHHHHTTTCHH---H
T ss_pred             HHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH-----HH--HHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhccCHH---H
Confidence            5677777788888888988888888887653     21  24566677778887 888899888888888754432   2


Q ss_pred             HHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCC
Q 015939          260 VELGMVQILTRILSDSRTQILTVEKSIKMLSIVATC  295 (398)
Q Consensus       260 v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~  295 (398)
                      ++ +.+..+-+++.  +.++.++-.|+.+|..+...
T Consensus       174 v~-~~~~~l~~ll~--d~n~~V~~~Al~lL~ei~~~  206 (355)
T 3tjz_B          174 VK-RWVNEAQEAAS--SDNIMVQYHALGLLYHVRKN  206 (355)
T ss_dssp             HH-TTHHHHHHHTT--CSSHHHHHHHHHHHHHHHTT
T ss_pred             HH-HHHHHHHHHhc--CCCccHHHHHHHHHHHHHhh
Confidence            33 57888888884  46788888888888888874

>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B

Probab=95.66  E-value=0.0086  Score=55.51  Aligned_cols=64  Identities=11%  Similarity=0.175  Sum_probs=52.3

Q ss_pred             CcccccCccccCCCceecC-CCcc--cchhHHHHHHhc-CCCCCCcccccCCCCCCcccHHHHHHHHH
Q 015939           12 NLFRCPISLDVMKSPVSLC-TGVT--YDRSSIQHWLES-GHDTCPATMQILSTKEFVPNLTLHRLIAH   75 (398)
Q Consensus        12 ~~~~Cpi~~~~~~dPv~~~-~g~~--~~r~~i~~~~~~-~~~~CP~~~~~l~~~~l~~n~~l~~~i~~   75 (398)
                      -.+.||++...|+.|+--. |.|.  |+...+-....+ +.-.||+|++.+...++..+.-+.+.+..
T Consensus       214 vSL~CPlS~~ri~~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~~~dL~ID~~~~~IL~~  281 (360)
T 4fo9_A          214 VSLMCPLGKMRLTIPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAAYESLILDGLFMEILND  281 (360)
T ss_dssp             EESBCTTTCSBCSSEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCCGGGEEEBHHHHHHHTT
T ss_pred             EeeeCCCccceeccCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccCHHHeEEcHHHHHHHHh
Confidence            3568999999999999975 9998  998888887653 44579999999999999888777666543

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.56  E-value=0.33  Score=44.36  Aligned_cols=189  Identities=15%  Similarity=0.067  Sum_probs=106.7

Q ss_pred             HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHH----HHhhhccCCcHHHHHHHHHHHHhhh
Q 015939           86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVF----GVLNRKRRSEIAVLESAVRVLNLIV  161 (398)
Q Consensus        86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~----~lL~~~~~~~~~~~~~al~~L~~l~  161 (398)
                      .+..+.+.+ +...+  .+.-++..+|-.+.+ +.....+.+.++. ..++    ..+.+  ...+..+--+++++.|+.
T Consensus       104 ~l~~l~kil-~WP~~--~~fPvLDLlRl~~l~-p~~~~~~~~~~~~-~~l~~~l~~~~~~--~~~p~n~ml~lR~l~NlF  176 (304)
T 3ebb_A          104 QLQILWKAI-NCPED--IVFPALDILRLSIKH-PSVNENFCNEKEG-AQFSSHLINLLNP--KGKPANQLLALRTFCNCF  176 (304)
T ss_dssp             HHHHHHHHH-TSCTT--TCHHHHHHHHHHTTS-HHHHHHHHSTTTH-HHHHHHHHHTTCT--TSCHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHH-cCCHH--hHHHHHHHHHHHHcC-ccHHHHhhccccc-hHHHHHHHHhcCC--CCChHHHHHHHHHHHHcc
Confidence            445555554 33332  677777777776654 4444444433122 3333    33332  122334577889999998


Q ss_pred             cccchHHHhhHhhhcc-CCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHH
Q 015939          162 NENGVKEKLNRLILNT-YNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALND  240 (398)
Q Consensus       162 ~~~~~~~~~~~~il~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~  240 (398)
                      .+...    +..++.. ..+++.+...+...+..++..++.++.|++.........-....++..+..+++...+.++.-
T Consensus       177 ~~~~g----~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~~~~ll~~l~~il~~~~d~Ealy  252 (304)
T 3ebb_A          177 VGQAG----QKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEGKAQCLSLISTILEVVQDLEATF  252 (304)
T ss_dssp             GSHHH----HHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHTTCCCHHHHH
T ss_pred             CCchh----HHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhccCCHHHHH
Confidence            76654    4543321 234455555555568889999999999998752110001111235556666776656889999


Q ss_pred             HHHHHHHHhcCCcchHHHHHH-cCChHHHHHHhcccCcchhhHHHHH
Q 015939          241 AILSILITLSVYRSVKAQLVE-LGMVQILTRILSDSRTQILTVEKSI  286 (398)
Q Consensus       241 ~a~~aL~~Ls~~~~~~~~~v~-~g~v~~Lv~lL~~~~~~~~~~~~al  286 (398)
                      .++.+|.+|...+.....+.+ .|+-..+-++.+ .+..+++.+.|-
T Consensus       253 R~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~-~~~~~kv~~~~~  298 (304)
T 3ebb_A          253 RLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSS-VSEPAKVSECCR  298 (304)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGG-CCSSHHHHHHHH
T ss_pred             HHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHh-CCCchhHHHHHH
Confidence            999999999876665666654 444444444443 223445544433

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=95.38  E-value=0.078  Score=47.73  Aligned_cols=191  Identities=13%  Similarity=0.075  Sum_probs=113.2

Q ss_pred             ChHHHHHHHhcCChhhHHHHHHHHHHhhcCc-h--hHHHhh-chhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcc-
Q 015939          180 CLPLFLEILREGNLDSKIGSIKILDSISLDN-E--SKRRVL-ETENLLSALFDYLKLAEDQALNDAILSILITLSVYRS-  254 (398)
Q Consensus       180 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~-~--~~~~i~-~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~-  254 (398)
                      -+| |-+-|.+.+...|..|...|..+.... .  ...... ......+.+-+.+.+. +..++..++.+|..+...-. 
T Consensus        11 klp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~Ds-N~~v~~~al~~l~~~~~~~~~   88 (278)
T 4ffb_C           11 TLP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDS-NVVAQEQAIVALNSLIDAFAS   88 (278)
T ss_dssp             CCC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCS-SHHHHHHHHHHHHHHHTTCC-
T ss_pred             cCC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHhhh
Confidence            355 567888999999999999988765431 1  111111 1112344455677776 89999999999998864211 


Q ss_pred             ---hHH--HHHHcCChHHHHHH-hcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHH
Q 015939          255 ---VKA--QLVELGMVQILTRI-LSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAV  328 (398)
Q Consensus       255 ---~~~--~~v~~g~v~~Lv~l-L~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~  328 (398)
                         .+.  ...-...++.|++= +  .+..+.++..+..+|..+.........      .++.++..+...++.++..++
T Consensus        89 ~~~~~~~~~~~~~~~l~~lveK~l--~~~k~~~~~~a~~~l~~~~~~~~~~~~------~~e~l~~~l~~Knpkv~~~~l  160 (278)
T 4ffb_C           89 SSLKNAHNITLISTWTPLLVEKGL--TSSRATTKTQSMSCILSLCGLDTSITQ------SVELVIPFFEKKLPKLIAAAA  160 (278)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHTS--SCCCHHHHHHHHHHHHHHHHTSSSSHH------HHHHHGGGGGCSCHHHHHHHH
T ss_pred             hhcccchhHHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHHHHhcCcHHH------HHHHHHHHHhccCHHHHHHHH
Confidence               111  11223467777753 5  346778888888888776531111111      123344455668999999999


Q ss_pred             HHHHHhhccCCChhH-HHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhcC
Q 015939          329 VVIWSMCCVYKDARV-KEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGKA  382 (398)
Q Consensus       329 ~~L~~l~~~~~~~~~-~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~~  382 (398)
                      ..|..+....+.... ....+. .+++.+..++... ++.+|+.|..++-.+-+|
T Consensus       161 ~~l~~~l~~fg~~~~~~k~~l~-~i~~~l~k~l~d~-~~~VR~aA~~l~~~ly~~  213 (278)
T 4ffb_C          161 NCVYELMAAFGLTNVNVQTFLP-ELLKHVPQLAGHG-DRNVRSQTMNLIVEIYKV  213 (278)
T ss_dssp             HHHHHHHHHHTTTTCCHHHHHH-HHGGGHHHHHTCS-SHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHhCCCcCCchhHHH-HHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHH
Confidence            999886543221110 111111 1223344455544 899999999999888775

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=95.13  E-value=0.31  Score=43.74  Aligned_cols=151  Identities=11%  Similarity=0.091  Sum_probs=97.6

Q ss_pred             CChHHHHHHHhcCChhhHHHHHHHHHHhhcCc-----hhHHHhhchhhHHHHHHH-HhccccCHHHHHHHHHHHHHhcCC
Q 015939          179 NCLPLFLEILREGNLDSKIGSIKILDSISLDN-----ESKRRVLETENLLSALFD-YLKLAEDQALNDAILSILITLSVY  252 (398)
Q Consensus       179 g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~-----~~~~~i~~~~g~i~~Lv~-lL~~~~~~~~~~~a~~aL~~Ls~~  252 (398)
                      ...+.+-..+...+..++..++.+|..++..-     ...........+++.|+. .|.+. .+.++..+..++..+...
T Consensus        55 ~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~lveK~l~~~-k~~~~~~a~~~l~~~~~~  133 (278)
T 4ffb_C           55 RDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKNAHNITLISTWTPLLVEKGLTSS-RATTKTQSMSCILSLCGL  133 (278)
T ss_dssp             SCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHHHHTSSCC-CHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhcccchhHHHHHHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHHh
Confidence            34566667788889999999999999887541     111111111457777875 46666 677888888888877532


Q ss_pred             cchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCC--HH--HHHHHhhccCcHHHHHHHHhccChhHHHHHH
Q 015939          253 RSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATC--SE--GRLALSEEASCAGRVVERVMKVGKTAREDAV  328 (398)
Q Consensus       253 ~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~--~~--~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~  328 (398)
                      ......     .++.++..+.  +.++.++..++..|..+...  ..  ......  ...++.+..++.+.++.+++.|.
T Consensus       134 ~~~~~~-----~~e~l~~~l~--~Knpkv~~~~l~~l~~~l~~fg~~~~~~k~~l--~~i~~~l~k~l~d~~~~VR~aA~  204 (278)
T 4ffb_C          134 DTSITQ-----SVELVIPFFE--KKLPKLIAAAANCVYELMAAFGLTNVNVQTFL--PELLKHVPQLAGHGDRNVRSQTM  204 (278)
T ss_dssp             SSSSHH-----HHHHHGGGGG--CSCHHHHHHHHHHHHHHHHHHTTTTCCHHHHH--HHHGGGHHHHHTCSSHHHHHHHH
T ss_pred             cCcHHH-----HHHHHHHHHh--ccCHHHHHHHHHHHHHHHHHhCCCcCCchhHH--HHHHHHHHHHHhCCcHHHHHHHH
Confidence            221111     2344555563  46889999999998887541  11  111111  12455677788889999999999


Q ss_pred             HHHHHhhccCC
Q 015939          329 VVIWSMCCVYK  339 (398)
Q Consensus       329 ~~L~~l~~~~~  339 (398)
                      .++..+...-|
T Consensus       205 ~l~~~ly~~~G  215 (278)
T 4ffb_C          205 NLIVEIYKVTG  215 (278)
T ss_dssp             HHHHHHHTC--
T ss_pred             HHHHHHHHHhC
Confidence            99999887543

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=94.35  E-value=0.76  Score=40.15  Aligned_cols=82  Identities=13%  Similarity=0.048  Sum_probs=67.5

Q ss_pred             HHHHHHcCChHHHHHHhccc---------CcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHH
Q 015939          256 KAQLVELGMVQILTRILSDS---------RTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTARED  326 (398)
Q Consensus       256 ~~~~v~~g~v~~Lv~lL~~~---------~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~  326 (398)
                      ...+ ..||+..|+.+|...         ..+......++.+|+.+..+..|...+..+++.+..++..+.+.++.++..
T Consensus        37 v~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~  115 (233)
T 2f31_A           37 VQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMID  115 (233)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHH
T ss_pred             HHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHH
Confidence            3444 567888888888531         114466778999999999999999999989999999999998899999999


Q ss_pred             HHHHHHHhhccC
Q 015939          327 AVVVIWSMCCVY  338 (398)
Q Consensus       327 a~~~L~~l~~~~  338 (398)
                      ++.+|..+|..+
T Consensus       116 ~leLL~~lc~~~  127 (233)
T 2f31_A          116 AAKLLSALCILP  127 (233)
T ss_dssp             HHHHHHHHHTCS
T ss_pred             HHHHHHHHHhCC
Confidence            999999999865

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=94.30  E-value=1.4  Score=41.58  Aligned_cols=177  Identities=18%  Similarity=0.237  Sum_probs=110.6

Q ss_pred             HHHHHHHcCCCCchhHHHHHHHHHHHhhhhhh-hhhhhhhcCCcHHHHHHHhhhc---c-----CCcHHHHHHHHHHHHh
Q 015939           89 VWIEKIKSENESENSCVDYLVKVAKFATGCEA-NRRFLASYGGFVEAVFGVLNRK---R-----RSEIAVLESAVRVLNL  159 (398)
Q Consensus        89 ~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~-~r~~i~~~~g~v~~L~~lL~~~---~-----~~~~~~~~~al~~L~~  159 (398)
                      ..++.|.+.... +.....+..|+.-.+..+. -.+.+. . +|+..|+.+|...   .     ..+......++++|..
T Consensus        70 ~yi~~L~~~~~~-~kl~~~L~sL~v~Lrt~~~sWV~~F~-~-~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLka  146 (383)
T 3eg5_B           70 MYIQELRSGLRD-MHLLSCLESLRVSLTSHPVSWVQTFG-A-EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKA  146 (383)
T ss_dssp             HHHHHHTTTCCH-HHHHHHHHHHHHHHHHSCHHHHHHHH-H-HHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcccc-hhHHHHHHHHHHHHhhCccHHHHHHH-H-ccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH
Confidence            356666655321 1223456666654444332 223444 5 7889999998531   1     1234556788889988


Q ss_pred             hhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCch--h-HHHhhch---------hhHHHHHH
Q 015939          160 IVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNE--S-KRRVLET---------ENLLSALF  227 (398)
Q Consensus       160 l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~--~-~~~i~~~---------~g~i~~Lv  227 (398)
                      +..+..+    ...++.+...+..|+..|.+.++.++..+..+|..++..++  + ...+...         ..-+..++
T Consensus       147 lmN~~~G----~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv  222 (383)
T 3eg5_B          147 FMNNKFG----IKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLL  222 (383)
T ss_dssp             HTSSHHH----HHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHH
T ss_pred             Hhcchhh----HHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHH
Confidence            8876655    46668888999999999999999999999999998886643  2 3333210         12367788


Q ss_pred             HHhccccCHHHHHHHHHHHHHhcCCc---chH----HHHHHcCChHHHHHHhc
Q 015939          228 DYLKLAEDQALNDAILSILITLSVYR---SVK----AQLVELGMVQILTRILS  273 (398)
Q Consensus       228 ~lL~~~~~~~~~~~a~~aL~~Ls~~~---~~~----~~~v~~g~v~~Lv~lL~  273 (398)
                      ..|++..+.+.+.+++..+-.+....   +.|    ..+...|..+. +.-|+
T Consensus       223 ~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~i-l~~lr  274 (383)
T 3eg5_B          223 DGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQV-LQELR  274 (383)
T ss_dssp             HTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHHH-HHHHT
T ss_pred             HHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCChHHH-HHHHh
Confidence            88887546777777777666665433   233    33345655554 44465

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=94.17  E-value=0.8  Score=48.79  Aligned_cols=222  Identities=9%  Similarity=0.074  Sum_probs=124.3

Q ss_pred             cHHHHHHHHHHHHhhhcccchHHHhhHhhhc----cCCChHH----HHHHHhcC---ChhhHHHHHHHHHHhhcCchhHH
Q 015939          146 EIAVLESAVRVLNLIVNENGVKEKLNRLILN----TYNCLPL----FLEILREG---NLDSKIGSIKILDSISLDNESKR  214 (398)
Q Consensus       146 ~~~~~~~al~~L~~l~~~~~~~~~~~~~il~----~~g~i~~----Lv~lL~~~---~~~~~~~a~~~L~~L~~~~~~~~  214 (398)
                      +-+.++.|+.++..++......   ... +.    .....+.    ++..|.+.   .+-+|..|+++|..++..- ...
T Consensus       418 ~w~~reaal~algaia~~~~~~---~~~-~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~  492 (960)
T 1wa5_C          418 NWKFKDLYIYLFTALAINGNIT---NAG-VSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKA  492 (960)
T ss_dssp             CHHHHHHHHHHHHHHHBSSCCB---TTB-CCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHH
T ss_pred             hHHHHHHHHHHHHHHHHHhccc---cCC-cccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHH
Confidence            3456688999998887532210   000 00    0022232    33345555   7889999999999998752 122


Q ss_pred             HhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcc---------hHHHHH--HcCChHHHHHHhcccC---cchh
Q 015939          215 RVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRS---------VKAQLV--ELGMVQILTRILSDSR---TQIL  280 (398)
Q Consensus       215 ~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~---------~~~~~v--~~g~v~~Lv~lL~~~~---~~~~  280 (398)
                      .   ...+++.++..|.+. ++.++.+|+.+|.+++...+         .+..+.  -...+..|+.++....   .+..
T Consensus       493 ~---l~~~l~~l~~~L~d~-~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~  568 (960)
T 1wa5_C          493 Q---LIELMPILATFLQTD-EYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLA  568 (960)
T ss_dssp             H---HHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHT
T ss_pred             H---HHHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCccc
Confidence            2   246788899988877 78899999999999986421         122222  1235566667775310   0111


Q ss_pred             hHHHHHHHHHHHhCCH-HHHHHHhhccCcHHHHHHHHhc-----cChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHH
Q 015939          281 TVEKSIKMLSIVATCS-EGRLALSEEASCAGRVVERVMK-----VGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLT  354 (398)
Q Consensus       281 ~~~~al~~L~~La~~~-~~~~~i~~~~g~v~~Lv~~l~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~  354 (398)
                      ..+.++.+|..++..- +......  ...++.|+..+..     .++.....++.+|..+....+ ++... -.....++
T Consensus       569 ~~e~l~~al~~vv~~~~~~~~p~~--~~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~-~~~~~-~~~~~~~p  644 (960)
T 1wa5_C          569 ENEFLMRSIFRVLQTSEDSIQPLF--PQLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQ-RQNLP-LLVDSMMP  644 (960)
T ss_dssp             SCHHHHHHHHHHHHHHTTTTGGGH--HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSC-GGGHH-HHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCC-cchHH-HHHHHHHH
Confidence            3345666666554311 1111111  1244555555543     345566677888877776522 33332 23345677


Q ss_pred             HHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          355 KLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       355 ~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      .+...|+.. .....+-+..++..+.+
T Consensus       645 ~~~~iL~~~-~~~~~~~~~~i~~~l~~  670 (960)
T 1wa5_C          645 TFLTVFSED-IQEFIPYVFQIIAFVVE  670 (960)
T ss_dssp             HHHHHHHTT-CTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHhh-hHhhHHHHHHHHHHHHH
Confidence            788888765 34455556665555544

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=93.99  E-value=0.76  Score=42.31  Aligned_cols=160  Identities=11%  Similarity=0.122  Sum_probs=106.7

Q ss_pred             HHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcc
Q 015939          199 SIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQ  278 (398)
Q Consensus       199 a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~  278 (398)
                      +-..|..|..+.+.-+-++. ..++..+..+..-+ +.++.++..+.|...|....-+..-. ...+|.++..+. -+++
T Consensus       263 ~FDLL~LLmHdSnAIDGFVk-~DGv~~I~TvinYp-N~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~-~h~e  338 (619)
T 3c2g_A          263 TFDLLGLLLHDSDAIDGFVR-SDGVGAITTVVQYP-NNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIE-IHPD  338 (619)
T ss_dssp             HHHHHHHHCCSHHHHHHHHH-TTHHHHHHHHTTSS-CHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHH-HCCC
T ss_pred             HHHHHHHHhcccccccceee-cccceeEEEEeecC-CcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhc-cCCC
Confidence            33444444444444555666 67788888888777 78899999999999887665432211 346788888886 4678


Q ss_pred             hhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhcc-------ChhHHHHHHHHHHHhh------------ccCC
Q 015939          279 ILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKV-------GKTAREDAVVVIWSMC------------CVYK  339 (398)
Q Consensus       279 ~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~-------~~~~~~~a~~~L~~l~------------~~~~  339 (398)
                      ++++-...+.|.|...+....+++.-..|+|+.|-..+.+.       +..-+..|++++.|--            ..+|
T Consensus       339 DdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NG  418 (619)
T 3c2g_A          339 DEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNG  418 (619)
T ss_dssp             HHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTS
T ss_pred             cceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCC
Confidence            99999999999999987777766654569999999998762       2233455665554411            1111


Q ss_pred             --------ChhHHHHHHhcCCHHHHHHHHhh
Q 015939          340 --------DARVKEAVVNSNGLTKLLLVMQS  362 (398)
Q Consensus       340 --------~~~~~~~~~~~g~~~~Ll~~l~~  362 (398)
                              +...+...++-.++.+|...|.-
T Consensus       419 qr~~~G~~EqQQVckFIE~d~LKrLMtCLS~  449 (619)
T 3c2g_A          419 ETKTAGPNEKQQVCKFIEIDILKKLMSCLSC  449 (619)
T ss_dssp             CCCCCCHHHHHHHHGGGSHHHHHHHHHHHHC
T ss_pred             ccccCChHHHHHHHHHHHHHHHHHHHHHhcc
Confidence                    01233444556778888888754

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=93.68  E-value=0.69  Score=49.64  Aligned_cols=152  Identities=6%  Similarity=0.029  Sum_probs=90.5

Q ss_pred             CChhhHHHHHHHHHHhhcCc-hhHHHhhchhhHHHHHHHHhcccc----CHHHHHHHHHHHHHhcCCcchHHHHHHcCCh
Q 015939          191 GNLDSKIGSIKILDSISLDN-ESKRRVLETENLLSALFDYLKLAE----DQALNDAILSILITLSVYRSVKAQLVELGMV  265 (398)
Q Consensus       191 ~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~----~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v  265 (398)
                      .+...++.++++++.++... +....-.- ..+++.|+.++.+..    ...++..++++|...+..-........ ..+
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l-~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~-~vl  542 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-TVI  542 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH-HHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHH-HHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH-HHH
Confidence            47888999999999999873 22121111 568999999987521    222334566777666543222122221 144


Q ss_pred             HHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhh-c----cCcHHHHHHH----HhccChhHHHHHHHHHHHhhc
Q 015939          266 QILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSE-E----ASCAGRVVER----VMKVGKTAREDAVVVIWSMCC  336 (398)
Q Consensus       266 ~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~-~----~g~v~~Lv~~----l~~~~~~~~~~a~~~L~~l~~  336 (398)
                      ..|++.|.  ++.++++..|+.++.+||.  +.+..+.. +    ...++.++..    +.+-++.....+..++..+..
T Consensus       543 ~~L~~~l~--~~~~~v~~~A~~al~~l~~--~c~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~  618 (1023)
T 4hat_C          543 LKLFEFMH--ETHEGVQDMACDTFIKIVQ--KCKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS  618 (1023)
T ss_dssp             HHHHHHTT--CSCHHHHHHHHHHHHHHHH--HHTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhh--cCCHHHHHHHHHHHHHHHH--HHHHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            45555552  3567899999999999996  33344431 1    1234444443    333567777788888888887


Q ss_pred             cCCChhHHHHHH
Q 015939          337 VYKDARVKEAVV  348 (398)
Q Consensus       337 ~~~~~~~~~~~~  348 (398)
                      ..++...+...+
T Consensus       619 ~~~~~~~~~~~l  630 (1023)
T 4hat_C          619 EERSVAERNRLL  630 (1023)
T ss_dssp             TCCSHHHHHHHH
T ss_pred             hCCCHhhHHHHH
Confidence            665444344333

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=93.61  E-value=0.8  Score=40.81  Aligned_cols=178  Identities=12%  Similarity=0.124  Sum_probs=110.5

Q ss_pred             HHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhh-hccCCcHHHHHHHHHHHHhhhcccchHH
Q 015939           90 WIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLN-RKRRSEIAVLESAVRVLNLIVNENGVKE  168 (398)
Q Consensus        90 l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~-~~~~~~~~~~~~al~~L~~l~~~~~~~~  168 (398)
                      +...|.+.+.  ..+.+|+..|......++  ...+..    +..++..+. ...+.+..+...++.+|..+...-.+  
T Consensus        51 ~~~~lfs~d~--k~~~~ale~L~~~l~~~~--~~~~~~----lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~--  120 (266)
T 2of3_A           51 LMSQLFHKDF--KQHLAALDSLVRLADTSP--RSLLSN----SDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRD--  120 (266)
T ss_dssp             HHHHHTCSCH--HHHHHHHHHHHHHHHHCH--HHHHHT----HHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHhcCCCH--HHHHHHHHHHHHHhhhCh--HHHHHH----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh--
Confidence            3444555443  477888888887664433  223332    233333221 00234566777888877765421111  


Q ss_pred             HhhHhhhc---cCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHH
Q 015939          169 KLNRLILN---TYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSI  245 (398)
Q Consensus       169 ~~~~~il~---~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~a  245 (398)
                        +.+-+.   ..-.+|.|++-+-.....+|..+-.+|..+...       ..-..+++.++.-+++. +...+..++..
T Consensus       121 --~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v-------~~~~~v~~~l~~g~ksK-N~R~R~e~l~~  190 (266)
T 2of3_A          121 --TETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV-------VGPLKMTPMLLDALKSK-NARQRSECLLV  190 (266)
T ss_dssp             --TTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH-------HCHHHHHHHHHHGGGCS-CHHHHHHHHHH
T ss_pred             --ccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH-------CCHHHHHHHHHHHHccC-CHHHHHHHHHH
Confidence              000011   134689998888777778898888888776532       22244677888888888 88999999998


Q ss_pred             HHHhcCC-cchHHHHHHcCCh---HHHHHHhcccCcchhhHHHHHHHHHHHhC
Q 015939          246 LITLSVY-RSVKAQLVELGMV---QILTRILSDSRTQILTVEKSIKMLSIVAT  294 (398)
Q Consensus       246 L~~Ls~~-~~~~~~~v~~g~v---~~Lv~lL~~~~~~~~~~~~al~~L~~La~  294 (398)
                      |..+-.. .-.     ...++   +.+..++.  +.|..++..|+.++..+-.
T Consensus       191 l~~li~~~G~~-----~~~~l~~~~~ia~ll~--D~d~~VR~aAl~~lve~y~  236 (266)
T 2of3_A          191 IEYYITNAGIS-----PLKSLSVEKTVAPFVG--DKDVNVRNAAINVLVACFK  236 (266)
T ss_dssp             HHHHHHHHCSG-----GGGGGCHHHHHGGGGG--CSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCC-----ccccccchHHHHHHHc--CCCHHHHHHHHHHHHHHHH
Confidence            8888421 111     23478   99999994  5789999999988886543

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=93.53  E-value=4.5  Score=42.92  Aligned_cols=226  Identities=11%  Similarity=0.037  Sum_probs=128.1

Q ss_pred             CCchhHHHHHHHHHHHhhhhhhhhhhhh---hcCCcHHHHH----HHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhh
Q 015939           99 ESENSCVDYLVKVAKFATGCEANRRFLA---SYGGFVEAVF----GVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLN  171 (398)
Q Consensus        99 ~~~~~~~~al~~L~~l~~~~~~~r~~i~---~~~g~v~~L~----~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~  171 (398)
                      .+|..+..|+..+..++.........+.   ......+.+.    ..|.+..+..+.++..|+++|..++..-..     
T Consensus       417 ~~w~~reaal~algaia~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~-----  491 (960)
T 1wa5_C          417 KNWKFKDLYIYLFTALAINGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK-----  491 (960)
T ss_dssp             -CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH-----
T ss_pred             hhHHHHHHHHHHHHHHHHHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH-----
Confidence            3456677788888888754211110000   0102333333    334441112567789999999988764221     


Q ss_pred             HhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCch---------hHHHhhc-hhhHHHHHHHHhcccc----CHH
Q 015939          172 RLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNE---------SKRRVLE-TENLLSALFDYLKLAE----DQA  237 (398)
Q Consensus       172 ~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~---------~~~~i~~-~~g~i~~Lv~lL~~~~----~~~  237 (398)
                      ..   ...+++.++..|.+.+..++.+|+.+|.+++...+         .+..+.. ....++.|+.++....    ...
T Consensus       492 ~~---l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~  568 (960)
T 1wa5_C          492 AQ---LIELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLA  568 (960)
T ss_dssp             HH---HHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHT
T ss_pred             HH---HHHHHHHHHHHhCCCChhHHHHHHHHHHHHHhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCccc
Confidence            11   23467888888888788999999999999987421         2333432 2457777788877641    011


Q ss_pred             HHHHHHHHHHHhcCC-cchHHHHHHcCChHHHHHHhcc---cCcchhhHHHHHHHHHHHhC--CHHHHHHHhhccCcHHH
Q 015939          238 LNDAILSILITLSVY-RSVKAQLVELGMVQILTRILSD---SRTQILTVEKSIKMLSIVAT--CSEGRLALSEEASCAGR  311 (398)
Q Consensus       238 ~~~~a~~aL~~Ls~~-~~~~~~~v~~g~v~~Lv~lL~~---~~~~~~~~~~al~~L~~La~--~~~~~~~i~~~~g~v~~  311 (398)
                      ....++.+|..+... .+.....+. ..++.|+..+..   ..+++.....++.+|..++.  .++....+.  ...+|.
T Consensus       569 ~~e~l~~al~~vv~~~~~~~~p~~~-~l~~~L~~~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~~~~--~~~~p~  645 (960)
T 1wa5_C          569 ENEFLMRSIFRVLQTSEDSIQPLFP-QLLAQFIEIVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLPLLV--DSMMPT  645 (960)
T ss_dssp             SCHHHHHHHHHHHHHHTTTTGGGHH-HHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHHHHH--HHHHHH
T ss_pred             ccHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHHHHH--HHHHHH
Confidence            234566666655321 111111111 144555555532   23455666677888887765  344444454  256788


Q ss_pred             HHHHHhccChhHHHHHHHHHHHhh
Q 015939          312 VVERVMKVGKTAREDAVVVIWSMC  335 (398)
Q Consensus       312 Lv~~l~~~~~~~~~~a~~~L~~l~  335 (398)
                      +..+|........+.+..++..+.
T Consensus       646 ~~~iL~~~~~~~~~~~~~i~~~l~  669 (960)
T 1wa5_C          646 FLTVFSEDIQEFIPYVFQIIAFVV  669 (960)
T ss_dssp             HHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHhhHHHHHHHHHHHH
Confidence            888887766667777777776655

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=93.42  E-value=4.3  Score=37.16  Aligned_cols=196  Identities=8%  Similarity=0.019  Sum_probs=136.6

Q ss_pred             cCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhH----HHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC
Q 015939          177 TYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESK----RRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV  251 (398)
Q Consensus       177 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~----~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~  251 (398)
                      ..+.+..|+..|..=+.+.|..++.+..++... ...+    ..+......+..|++-.   .+++.--.+-..|+....
T Consensus        76 ~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY---e~~diAl~~G~mLRecir  152 (341)
T 1upk_A           76 NSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY---ESPEIALNCGIMLRECIR  152 (341)
T ss_dssp             HHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG---GSTTTHHHHHHHHHHHHT
T ss_pred             HhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh---ccchhHhHHHHHHHHHHH
Confidence            457888999999988999999999999988765 2222    22222233444443333   345566666677777778


Q ss_pred             CcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHh-CCHHHHHHHhhc--cCcHHHHHHHHhccChhHHHHHH
Q 015939          252 YRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVA-TCSEGRLALSEE--ASCAGRVVERVMKVGKTAREDAV  328 (398)
Q Consensus       252 ~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La-~~~~~~~~i~~~--~g~v~~Lv~~l~~~~~~~~~~a~  328 (398)
                      ++...+.+...+.+..+.+.++  .+.-++...|..+++.|- .+.....++...  .-.....-++|.+++--++..++
T Consensus       153 ~e~la~~iL~~~~f~~fF~yv~--~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSl  230 (341)
T 1upk_A          153 HEPLAKIILWSEQFYDFFRYVE--MSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL  230 (341)
T ss_dssp             SHHHHHHHHHSGGGGHHHHHTT--CSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             hHHHHHHHhccHHHHHHHHHhc--CCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHH
Confidence            8888888888888999999994  478899999999999964 466666666532  13566777888889999999999


Q ss_pred             HHHHHhhccCCChhHHHHHHh----cCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          329 VVIWSMCCVYKDARVKEAVVN----SNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       329 ~~L~~l~~~~~~~~~~~~~~~----~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      ..|..|-..   +.+...|.+    ..-+..+..+|++. +..+|-.|-.+.|.+-.
T Consensus       231 KLLgelLld---r~N~~vM~~Yis~~~nLkl~M~LL~d~-sk~Iq~EAFhVFKvFVA  283 (341)
T 1upk_A          231 KLLGELLLD---RHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVA  283 (341)
T ss_dssp             HHHHHHHHS---GGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhC---chHHHHHHHHhCCHHHHHHHHHHhcCc-hhchhhhhhhheeeeee
Confidence            999998764   333333322    33355555555555 77788777777766543

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=93.35  E-value=3.7  Score=35.66  Aligned_cols=149  Identities=12%  Similarity=0.104  Sum_probs=94.3

Q ss_pred             hhHHHHHHHHhccc----------cCHHHHHHHHHHHHHhcCCcchHHHHH-HcCChHHHHHHhcccCcchhhHHHHHHH
Q 015939          220 ENLLSALFDYLKLA----------EDQALNDAILSILITLSVYRSVKAQLV-ELGMVQILTRILSDSRTQILTVEKSIKM  288 (398)
Q Consensus       220 ~g~i~~Lv~lL~~~----------~~~~~~~~a~~aL~~Ls~~~~~~~~~v-~~g~v~~Lv~lL~~~~~~~~~~~~al~~  288 (398)
                      .+|+..|+.+|..-          .+.+....++.+|..+.-+......+. ..+++..|+..|.  +..+.++..++.+
T Consensus        42 ~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~--s~~~~~r~~~leL  119 (233)
T 2f31_A           42 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD--PAVPNMMIDAAKL  119 (233)
T ss_dssp             HHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCC--TTSHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhC--CCCchHHHHHHHH
Confidence            57888899888642          134567789999999988887777776 5678888988884  5788899999999


Q ss_pred             HHHHhCCHH--H-HHHHhh---------ccCcHHHHHHHHhccChhHHHHHHHHHHHhhccC-CChh----HHHHHHhcC
Q 015939          289 LSIVATCSE--G-RLALSE---------EASCAGRVVERVMKVGKTAREDAVVVIWSMCCVY-KDAR----VKEAVVNSN  351 (398)
Q Consensus       289 L~~La~~~~--~-~~~i~~---------~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~-~~~~----~~~~~~~~g  351 (398)
                      |..+|..++  | ...+.+         ...-...+|+.+...+...-..++..+.|.-..+ ++-+    .+.++...|
T Consensus       120 L~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~G  199 (233)
T 2f31_A          120 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG  199 (233)
T ss_dssp             HHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC
Confidence            999987543  5 444431         1124555666665433333334444444543333 3323    445555565


Q ss_pred             CHHHHHHHHhhcCcHHHHHH
Q 015939          352 GLTKLLLVMQSENEGIVRKM  371 (398)
Q Consensus       352 ~~~~Ll~~l~~~~~~~~k~~  371 (398)
                       +..++..|+...++.....
T Consensus       200 -l~~il~~l~~~~~~~L~~Q  218 (233)
T 2f31_A          200 -LHQVLQELREIENEDMKVQ  218 (233)
T ss_dssp             -HHHHHHHHHHCCCHHHHHH
T ss_pred             -hHHHHHHHhccCCHHHHHH
Confidence             4556677766556665443

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=93.05  E-value=4.7  Score=42.77  Aligned_cols=218  Identities=11%  Similarity=0.019  Sum_probs=122.1

Q ss_pred             CCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhcc--CCcHHHHHHHHHHHHhhhcccchHHHhhHhhhc
Q 015939           99 ESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKR--RSEIAVLESAVRVLNLIVNENGVKEKLNRLILN  176 (398)
Q Consensus        99 ~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~--~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~  176 (398)
                      .+|..+..|+..+..++..-....     . ..++.++.++..-.  +.++.++..++.+|..++..-..+   ...   
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~-----~-~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~---~~~---  543 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEE-----K-RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMEN---PAY---  543 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC------------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC-------C---
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhh-----h-HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcC---HHH---
Confidence            346678888888888875533211     1 34455555443211  346678899999999887432211   111   


Q ss_pred             cCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhc-hhhHHHHHHHHhccc-cCHHHHHHHHHHHHHhcCC--
Q 015939          177 TYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLE-TENLLSALFDYLKLA-EDQALNDAILSILITLSVY--  252 (398)
Q Consensus       177 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~~g~i~~Lv~lL~~~-~~~~~~~~a~~aL~~Ls~~--  252 (398)
                      -..+++.|+..|+   +.++..|+.+|..|+..-  +..+.. ..+.+..|..++..+ .+.+.+..+..++..+...  
T Consensus       544 l~~vl~~l~~~l~---~~v~~~A~~al~~l~~~~--~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~  618 (971)
T 2x1g_F          544 IPPAINLLVRGLN---SSMSAQATLGLKELCRDC--QLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLR  618 (971)
T ss_dssp             HHHHHHHHHHHHH---SSCHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSC
T ss_pred             HHHHHHHHHHHhC---hHHHHHHHHHHHHHHHHH--HHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCC
Confidence            1245677777773   788999999999999652  223321 245677777777764 2567888888888888542  


Q ss_pred             cchHHHHHHcCChHHHHHHhcc---cCc-chhhHHHHHHHHHHHhCCHH-----------------HHHHHhhccCcHHH
Q 015939          253 RSVKAQLVELGMVQILTRILSD---SRT-QILTVEKSIKMLSIVATCSE-----------------GRLALSEEASCAGR  311 (398)
Q Consensus       253 ~~~~~~~v~~g~v~~Lv~lL~~---~~~-~~~~~~~al~~L~~La~~~~-----------------~~~~i~~~~g~v~~  311 (398)
                      .+.+...++. .++.++..+..   ... +++........|..|+..-.                 ....+.  ...++.
T Consensus       619 ~~~~~~~~~~-ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~i~~~  695 (971)
T 2x1g_F          619 PEEIPKYLDI-IVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSSLNTDVDEQATDQPIVQPVLLVM--QRTMPI  695 (971)
T ss_dssp             TTHHHHHHHH-HHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHHHTC-------------CCHHHH--HTTHHH
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhhcCCCcCcccccccCCCchHHHH--HHHHHH
Confidence            2444443332 44444443321   111 22233333444444432100                 011122  246677


Q ss_pred             HHHHHhc--cChhHHHHHHHHHHHhhc
Q 015939          312 VVERVMK--VGKTAREDAVVVIWSMCC  336 (398)
Q Consensus       312 Lv~~l~~--~~~~~~~~a~~~L~~l~~  336 (398)
                      +..++..  .++.+.+.++.++..++.
T Consensus       696 l~~~l~~~~~~~~v~e~~~~~~~~~~~  722 (971)
T 2x1g_F          696 FKRIAEMWVEEIDVLEAACSAMKHAIT  722 (971)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccccHHHHHHHHHHHHHHHH
Confidence            7776654  367889999999988764

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=92.64  E-value=6.8  Score=36.82  Aligned_cols=146  Identities=12%  Similarity=0.087  Sum_probs=92.5

Q ss_pred             hhHHHHHHHHhccc----------cCHHHHHHHHHHHHHhcCCcchHHHHH-HcCChHHHHHHhcccCcchhhHHHHHHH
Q 015939          220 ENLLSALFDYLKLA----------EDQALNDAILSILITLSVYRSVKAQLV-ELGMVQILTRILSDSRTQILTVEKSIKM  288 (398)
Q Consensus       220 ~g~i~~Lv~lL~~~----------~~~~~~~~a~~aL~~Ls~~~~~~~~~v-~~g~v~~Lv~lL~~~~~~~~~~~~al~~  288 (398)
                      .+|+..|+.+|..-          .+......++++|..+.-+......+. ...+|..|+..|.  +..+.++..++.+
T Consensus       108 ~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~~G~~~vl~~~~~i~~l~~~L~--s~~~~~~~~aleL  185 (383)
T 3eg5_B          108 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMD--PAVPNMMIDAAKL  185 (383)
T ss_dssp             HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSHHHHHHHHTCSSHHHHHHHTCC--TTSHHHHHHHHHH
T ss_pred             HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcchhhHHHHHcChHHHHHHHHHhC--CCchHHHHHHHHH
Confidence            56789999888521          134667889999999988877777776 5678999999984  5788899999999


Q ss_pred             HHHHhCCHH---HHHHHhh---------ccCcHHHHHHHHhcc-ChhHHHHHHHHHHHhhccCCChh----HHHHHHhcC
Q 015939          289 LSIVATCSE---GRLALSE---------EASCAGRVVERVMKV-GKTAREDAVVVIWSMCCVYKDAR----VKEAVVNSN  351 (398)
Q Consensus       289 L~~La~~~~---~~~~i~~---------~~g~v~~Lv~~l~~~-~~~~~~~a~~~L~~l~~~~~~~~----~~~~~~~~g  351 (398)
                      |..+|..++   +...+.+         ...-...+|..+... +...+..++..+=.+....++-+    .+.++.+.|
T Consensus       186 L~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~G  265 (383)
T 3eg5_B          186 LSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG  265 (383)
T ss_dssp             HHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCC
Confidence            999997543   3444431         123466677777653 33444444433333444333333    445555666


Q ss_pred             CHHHHHHHHhhcCcHHH
Q 015939          352 GLTKLLLVMQSENEGIV  368 (398)
Q Consensus       352 ~~~~Ll~~l~~~~~~~~  368 (398)
                      ..+ ++..|+...++..
T Consensus       266 l~~-il~~lr~~~~~~L  281 (383)
T 3eg5_B          266 LHQ-VLQELREIENEDM  281 (383)
T ss_dssp             HHH-HHHHHTTSCCHHH
T ss_pred             hHH-HHHHHhcCCChhH
Confidence            554 5556765544443

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=92.55  E-value=0.13  Score=45.31  Aligned_cols=48  Identities=15%  Similarity=0.295  Sum_probs=37.8

Q ss_pred             ccccCccccCCCceecC-CCcccchhHHHHHHhc-CCCCCCcccccCCCC
Q 015939           14 FRCPISLDVMKSPVSLC-TGVTYDRSSIQHWLES-GHDTCPATMQILSTK   61 (398)
Q Consensus        14 ~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~-~~~~CP~~~~~l~~~   61 (398)
                      ..|.+|.++..-=+.=+ |||.|=..|+.+|+.. +...||.|+......
T Consensus       181 ~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~  230 (238)
T 3nw0_A          181 KICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE  230 (238)
T ss_dssp             CBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred             CcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence            46999999988544333 8999999999999964 356899999886544

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=92.12  E-value=2.3  Score=45.17  Aligned_cols=180  Identities=8%  Similarity=0.040  Sum_probs=98.2

Q ss_pred             CChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHH
Q 015939          191 GNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTR  270 (398)
Q Consensus       191 ~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~  270 (398)
                      .+...++.|+.+|..++..-..... ......++.+..+..+..++.++..++++|..++..-........ .+++.|+.
T Consensus       476 ~~w~~~eaal~~l~~iae~~~~~~~-~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~~l~-~vl~~l~~  553 (971)
T 2x1g_F          476 THWTKLEACIYSFQSVAEHFGGEEK-RQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPAYIP-PAINLLVR  553 (971)
T ss_dssp             TCCHHHHHHHHHHHHTTTC-------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----CHH-HHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHHhhcChhhh-HHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHH
Confidence            4667889999999999876221110 000223442222322212788999999999998753221111111 24455555


Q ss_pred             HhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhc-cCcHHHHHHHHhc--cChhHHHHHHHHHHHhhccCCChhHHHHH
Q 015939          271 ILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEE-ASCAGRVVERVMK--VGKTAREDAVVVIWSMCCVYKDARVKEAV  347 (398)
Q Consensus       271 lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~-~g~v~~Lv~~l~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  347 (398)
                      .|     ++.++..|+.++..++.  +.+..+... ...+..+..++.+  .+...+..+..++..++...+.++... .
T Consensus       554 ~l-----~~~v~~~A~~al~~l~~--~~~~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~-~  625 (971)
T 2x1g_F          554 GL-----NSSMSAQATLGLKELCR--DCQLQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPK-Y  625 (971)
T ss_dssp             HH-----HSSCHHHHHHHHHHHHH--HCHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHH-H
T ss_pred             Hh-----ChHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHH-H
Confidence            55     27899999999999994  223333211 2455666666766  467888999999988876433122222 1


Q ss_pred             HhcCCHHHHHHH----HhhcC-cHHHHHHHHHHHHHHhc
Q 015939          348 VNSNGLTKLLLV----MQSEN-EGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       348 ~~~g~~~~Ll~~----l~~~~-~~~~k~~A~~lL~~l~~  381 (398)
                      .+ ..++.++..    ++... ++..+......+..++.
T Consensus       626 ~~-~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~  663 (971)
T 2x1g_F          626 LD-IIVSPCFEELQAICQADSKTPAARIRTIFRLNMIST  663 (971)
T ss_dssp             HH-HHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHH
T ss_pred             HH-HHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHH
Confidence            11 133333333    33221 33455566666666654

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=92.02  E-value=3.4  Score=38.11  Aligned_cols=120  Identities=16%  Similarity=0.168  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHH
Q 015939          148 AVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALF  227 (398)
Q Consensus       148 ~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv  227 (398)
                      ++...+...|..|. ++++.   ..- +++.+++..+..+.+-.+.++....+..|.-.+.....+..-  ....+|.++
T Consensus       258 QVvtR~FDLL~LLm-HdSnA---IDG-FVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~--L~e~LPFi~  330 (619)
T 3c2g_A          258 QVIIRTFDLLGLLL-HDSDA---IDG-FVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTP--LENILPFLL  330 (619)
T ss_dssp             HHHHHHHHHHHHHC-CSHHH---HHH-HHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSC--CTTHHHHHH
T ss_pred             HHHHHHHHHHHHHh-ccccc---ccc-eeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhcc--ccccchHHH
Confidence            44455555555444 33331   233 668889999999999888899889999988888765444332  256889999


Q ss_pred             HHhccccCHHHHHHHHHHHHHhcCCcc-hHHHHHHcCChHHHHHHhcc
Q 015939          228 DYLKLAEDQALNDAILSILITLSVYRS-VKAQLVELGMVQILTRILSD  274 (398)
Q Consensus       228 ~lL~~~~~~~~~~~a~~aL~~Ls~~~~-~~~~~v~~g~v~~Lv~lL~~  274 (398)
                      +.+.-..+.++.-.....|.|...... .+...+..|+|+.|-..+..
T Consensus       331 ~~i~~h~eDdvvYSGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~k  378 (619)
T 3c2g_A          331 RLIEIHPDDEVIYSGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISK  378 (619)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHT
T ss_pred             HHhccCCCcceEEecchHHHHHHhcccchHHHHhccCcHHHHHHHHhh
Confidence            998866578899999999999988776 44555699999999998863

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=91.91  E-value=3.2  Score=39.12  Aligned_cols=78  Identities=14%  Similarity=0.060  Sum_probs=65.0

Q ss_pred             cCChHHHHHHhccc---------CcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHH
Q 015939          262 LGMVQILTRILSDS---------RTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIW  332 (398)
Q Consensus       262 ~g~v~~Lv~lL~~~---------~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~  332 (398)
                      .||+..|+.+|...         ..+....-.++.+|+.+..+..|...+..+.+++..++..+.+.++.++..++.+|.
T Consensus        46 ~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~  125 (386)
T 2bnx_A           46 AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLS  125 (386)
T ss_dssp             HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHH
Confidence            57888888887521         114466778999999999999999999989999999999988889999999999999


Q ss_pred             HhhccCC
Q 015939          333 SMCCVYK  339 (398)
Q Consensus       333 ~l~~~~~  339 (398)
                      .+|..++
T Consensus       126 alc~~~~  132 (386)
T 2bnx_A          126 ALCILPQ  132 (386)
T ss_dssp             HHHTCCS
T ss_pred             HHHcCCC
Confidence            9998653

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=91.65  E-value=15  Score=38.66  Aligned_cols=157  Identities=15%  Similarity=0.127  Sum_probs=97.5

Q ss_pred             CCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccC
Q 015939           99 ESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTY  178 (398)
Q Consensus        99 ~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~  178 (398)
                      .+|..+..++..+..++..-...     .. ..++.++..+....+++..++..++.++..++..-..+   ...   -.
T Consensus       461 ~~w~~~eaal~al~~i~~~~~~~-----~~-~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~---~~~---l~  528 (963)
T 2x19_B          461 YSWQHTEALLYGFQSIAETIDVN-----YS-DVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADH---PVM---IN  528 (963)
T ss_dssp             CCHHHHHHHHHHHHHHTTSCCSS-----CC-SHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHC---HHH---HT
T ss_pred             CchHHHHHHHHHHHHHHhhcCch-----hh-HHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhC---HHH---HH
Confidence            34666777888888887553221     12 44556666654423235667889999999887532211   122   25


Q ss_pred             CChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhc-hhhHHHHHHHHhccc-cCHHHHHHHHHHHHHhcCCc--c
Q 015939          179 NCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLE-TENLLSALFDYLKLA-EDQALNDAILSILITLSVYR--S  254 (398)
Q Consensus       179 g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~~g~i~~Lv~lL~~~-~~~~~~~~a~~aL~~Ls~~~--~  254 (398)
                      .+++.++..|++  +.++..|+.+|..++..  .+..+.. ..+.+..|..++... -+.+.+..+..++..+....  +
T Consensus       529 ~vl~~l~~~l~~--~~V~~~A~~al~~l~~~--~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~~~  604 (963)
T 2x19_B          529 SVLPLVLHALGN--PELSVSSVSTLKKICRE--CKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVE  604 (963)
T ss_dssp             TTHHHHHHHTTC--GGGHHHHHHHHHHHHHH--TGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSCHH
T ss_pred             HHHHHHHHHhCC--chHHHHHHHHHHHHHHH--HHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCCHH
Confidence            789999998865  78999999999999864  2233332 245666677777753 25678888888888886432  3


Q ss_pred             hHHHHHHcCChHHHHHHh
Q 015939          255 VKAQLVELGMVQILTRIL  272 (398)
Q Consensus       255 ~~~~~v~~g~v~~Lv~lL  272 (398)
                      .....++. .++.+...+
T Consensus       605 ~~~~~~~~-l~~~l~~~l  621 (963)
T 2x19_B          605 EILKNLHS-LISPYIQQL  621 (963)
T ss_dssp             HHHHHHHH-HHHHHHHHH
T ss_pred             HHHHHHHH-HHHHHHHHH
Confidence            44443332 455555444

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=90.91  E-value=2.2  Score=37.96  Aligned_cols=100  Identities=13%  Similarity=0.237  Sum_probs=68.8

Q ss_pred             CcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC
Q 015939          130 GFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD  209 (398)
Q Consensus       130 g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~  209 (398)
                      -++|.|+.-+..   +...+++.+-.+|..+..-.+           -..+++.+++-+.+.+...|..++..+..+...
T Consensus       132 ~~lP~LveKlGd---~k~~vR~~~r~il~~l~~v~~-----------~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~  197 (266)
T 2of3_A          132 AFVPYLLLKTGE---AKDNMRTSVRDIVNVLSDVVG-----------PLKMTPMLLDALKSKNARQRSECLLVIEYYITN  197 (266)
T ss_dssp             HHHHHHHHGGGC---SSHHHHHHHHHHHHHHHHHHC-----------HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCC---ChHHHHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHh
Confidence            356777766655   444555666666655543111           112467777778888999999999888877654


Q ss_pred             chhHHHhhchhhHH---HHHHHHhccccCHHHHHHHHHHHHHh
Q 015939          210 NESKRRVLETENLL---SALFDYLKLAEDQALNDAILSILITL  249 (398)
Q Consensus       210 ~~~~~~i~~~~g~i---~~Lv~lL~~~~~~~~~~~a~~aL~~L  249 (398)
                      ....    . ..++   +.+..++.+. |..++.+|+.++..+
T Consensus       198 ~G~~----~-~~~l~~~~~ia~ll~D~-d~~VR~aAl~~lve~  234 (266)
T 2of3_A          198 AGIS----P-LKSLSVEKTVAPFVGDK-DVNVRNAAINVLVAC  234 (266)
T ss_dssp             HCSG----G-GGGGCHHHHHGGGGGCS-SHHHHHHHHHHHHHH
T ss_pred             cCCC----c-cccccchHHHHHHHcCC-CHHHHHHHHHHHHHH
Confidence            2221    1 3467   9999999998 999999999998866

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=90.78  E-value=6.8  Score=36.83  Aligned_cols=183  Identities=16%  Similarity=0.198  Sum_probs=109.4

Q ss_pred             HHHHHHcCCCCchhHHHHHHHHHHHhhhhhh-hhhhhhhcCCcHHHHHHHhhhc---c-----CCcHHHHHHHHHHHHhh
Q 015939           90 WIEKIKSENESENSCVDYLVKVAKFATGCEA-NRRFLASYGGFVEAVFGVLNRK---R-----RSEIAVLESAVRVLNLI  160 (398)
Q Consensus        90 l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~-~r~~i~~~~g~v~~L~~lL~~~---~-----~~~~~~~~~al~~L~~l  160 (398)
                      .++.|.+.... +....-+..|+...+.++. -.+.+. . ||+..|+.+|...   .     ..+......++.+|..+
T Consensus         9 yv~~L~~~~~~-~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~-~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkal   85 (386)
T 2bnx_A            9 YIQELRSGLRD-MHLLSCLESLRVSLNNNPVSWVQTFG-A-EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF   85 (386)
T ss_dssp             HHHHHTSCCCH-HHHHHHHHHHHHHHHHSCHHHHHHHH-H-HHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhccch-HHHHHHHHHHhHHHhcCCcHHHHHHH-H-hHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence            45566654321 1122344555543333332 222333 5 7888888888542   1     11345567888999888


Q ss_pred             hcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCch--h-HHHhhc---------hhhHHHHHHH
Q 015939          161 VNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNE--S-KRRVLE---------TENLLSALFD  228 (398)
Q Consensus       161 ~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~--~-~~~i~~---------~~g~i~~Lv~  228 (398)
                      ..+..+    ...++...+++..++..|.+.++.++..++.+|..++..++  . ...+..         ...-+..||.
T Consensus        86 mN~~~G----l~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~  161 (386)
T 2bnx_A           86 MNNKFG----IKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLD  161 (386)
T ss_dssp             TSSHHH----HHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHH
T ss_pred             hCCHHH----HHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHH
Confidence            877665    45557788999999999998899999999999988877643  3 332221         0123456788


Q ss_pred             HhccccCHHHHHHHHHHHHHhcCCcc---h----HHHHHHcCChHHHHHHhcccCcchhh
Q 015939          229 YLKLAEDQALNDAILSILITLSVYRS---V----KAQLVELGMVQILTRILSDSRTQILT  281 (398)
Q Consensus       229 lL~~~~~~~~~~~a~~aL~~Ls~~~~---~----~~~~v~~g~v~~Lv~lL~~~~~~~~~  281 (398)
                      .|.+..+.+.+.+++..+-.+....+   .    |..+...|.- .+++-|+. ..++.+
T Consensus       162 ~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~-~il~~Lr~-~~~~~L  219 (386)
T 2bnx_A          162 GLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLH-QVLQELRE-IENEDM  219 (386)
T ss_dssp             HTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHH-HHHHHHTT-CCCHHH
T ss_pred             HHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChH-HHHHHHhc-cCChhH
Confidence            88765467777777766666644332   2    3344456544 44555542 234443

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=90.07  E-value=9.7  Score=40.16  Aligned_cols=177  Identities=9%  Similarity=0.071  Sum_probs=103.1

Q ss_pred             hcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhc---cccCHHHHHHHHHHHHHhcCCcchHHHHHHcCCh
Q 015939          189 REGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLK---LAEDQALNDAILSILITLSVYRSVKAQLVELGMV  265 (398)
Q Consensus       189 ~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~---~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v  265 (398)
                      .+.+...++.++.+|..++..-...    . ...++.++..|.   ++ ++.++..+++++..++..-....... ...+
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~----~-~~~l~~l~~~l~~l~~~-~~~vr~~~~~~l~~~~~~l~~~~~~l-~~vl  531 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVN----Y-SDVVPGLIGLIPRISIS-NVQLADTVMFTIGALSEWLADHPVMI-NSVL  531 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSS----C-CSHHHHHHHHGGGSCCC-SHHHHHHHHHHHHHTHHHHHHCHHHH-TTTH
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCch----h-hHHHHHHHHHHHhCCCC-cHHHHHHHHHHHHHHHHHHHhCHHHH-HHHH
Confidence            3447778899999999998762110    0 123444444432   23 67899999999999875422111233 3588


Q ss_pred             HHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhc-cCcHHHHHHHHhc--cChhHHHHHHHHHHHhhccCCChh
Q 015939          266 QILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEE-ASCAGRVVERVMK--VGKTAREDAVVVIWSMCCVYKDAR  342 (398)
Q Consensus       266 ~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~-~g~v~~Lv~~l~~--~~~~~~~~a~~~L~~l~~~~~~~~  342 (398)
                      +.|+..|.    ++.++..|+.+|..++.  +.+..+... ...+..+..++.+  .+...+.....++..++...+ .+
T Consensus       532 ~~l~~~l~----~~~V~~~A~~al~~l~~--~~~~~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~~-~~  604 (963)
T 2x19_B          532 PLVLHALG----NPELSVSSVSTLKKICR--ECKYDLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQ-VE  604 (963)
T ss_dssp             HHHHHHTT----CGGGHHHHHHHHHHHHH--HTGGGCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTSC-HH
T ss_pred             HHHHHHhC----CchHHHHHHHHHHHHHH--HHHHHHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcCC-HH
Confidence            88888883    37899999999999984  222223210 1233344444554  356788888999988886443 22


Q ss_pred             HHHHHHhcCCHHHHHHHHh----hcCcHHHHHHHHHHHHHHh
Q 015939          343 VKEAVVNSNGLTKLLLVMQ----SENEGIVRKMCGDLVKVLG  380 (398)
Q Consensus       343 ~~~~~~~~g~~~~Ll~~l~----~~~~~~~k~~A~~lL~~l~  380 (398)
                      .....+ ...++.+...++    ...++..+.....++..++
T Consensus       605 ~~~~~~-~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~l~  645 (963)
T 2x19_B          605 EILKNL-HSLISPYIQQLEKLAEEIPNPSNKLAIVHILGLLS  645 (963)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHH-HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            222222 223444444332    2235666665555555443

>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1

Probab=89.48  E-value=0.53  Score=33.79  Aligned_cols=46  Identities=17%  Similarity=0.143  Sum_probs=37.2

Q ss_pred             ccccCcccc-----CCCceec--CCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939           14 FRCPISLDV-----MKSPVSL--CTGVTYDRSSIQHWLESGHDTCPATMQILS   59 (398)
Q Consensus        14 ~~Cpi~~~~-----~~dPv~~--~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~   59 (398)
                      -.|-||++-     --+|.+.  .|+...||.|.+-=.++|+..||+|+..++
T Consensus        17 qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk   69 (93)
T 1weo_A           17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK   69 (93)
T ss_dssp             CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred             CccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence            479999875     2335554  499999999999988889999999998876

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=88.23  E-value=26  Score=37.25  Aligned_cols=266  Identities=10%  Similarity=0.050  Sum_probs=139.3

Q ss_pred             HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccC-CcHHHHHHHHHHHHhhhc-
Q 015939           85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRR-SEIAVLESAVRVLNLIVN-  162 (398)
Q Consensus        85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~-~~~~~~~~al~~L~~l~~-  162 (398)
                      +.+...+...-+++.+.+.+.+|-.-|.++-+.           |++......+|.+ +. .+..++.-|+.+|.+... 
T Consensus         6 ~~v~~Al~~~~~p~sd~~~r~~A~~~L~~~q~s-----------p~aw~~~~~iL~~-~~~~~~~vr~fa~~~L~~~I~~   73 (980)
T 3ibv_A            6 QDVENAVEAALDPSVGPIIKQQATDFIGSLRSS-----------STGWKICHEIFSE-KTKYKPSTRLICLQTLSEKVRE   73 (980)
T ss_dssp             HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHS-----------TTHHHHHHHHTTC-TTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHcC-----------hhHHHHHHHHHhC-CCCCCHHHHHHHHHHHHHHHHh
Confidence            345555544444433334566666666655432           2555666677765 32 145566777777765543 


Q ss_pred             -ccc----hHHHhhHhhhccCCChHHHHHHHhc-----CChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhcc
Q 015939          163 -ENG----VKEKLNRLILNTYNCLPLFLEILRE-----GNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKL  232 (398)
Q Consensus       163 -~~~----~~~~~~~~il~~~g~i~~Lv~lL~~-----~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~  232 (398)
                       +.+    .    +..      .-..++.++..     ++..++...+.+|..+...+...    .=.+.++.|+.++++
T Consensus        74 l~~e~~~~~----~~~------lr~~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p~----~Wp~~i~~l~~~~~~  139 (980)
T 3ibv_A           74 WNNESNLLE----LQM------IRDSVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYPS----NWNDFFASLQGVIAA  139 (980)
T ss_dssp             CCTTTSHHH----HHH------HHHHHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHHHH
T ss_pred             CChhhhHHH----HHH------HHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCcc----cCchHHHHHHHHhcC
Confidence             112    2    111      12233333332     35678888888888887653110    114677888888876


Q ss_pred             ccCH-HHHHHHHHHHHHhcC---C------cc--h-----HHHHHHc---CChHHHHHHhcc--cCcchhhHHHHHHHHH
Q 015939          233 AEDQ-ALNDAILSILITLSV---Y------RS--V-----KAQLVEL---GMVQILTRILSD--SRTQILTVEKSIKMLS  290 (398)
Q Consensus       233 ~~~~-~~~~~a~~aL~~Ls~---~------~~--~-----~~~~v~~---g~v~~Lv~lL~~--~~~~~~~~~~al~~L~  290 (398)
                      + ++ ......+++|..++.   +      .+  .     +..|.+.   -+++.+..+|..  ...++.++..++.+|.
T Consensus       140 ~-~~~~~~~~~LriL~~i~EEv~~~~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~  218 (980)
T 3ibv_A          140 S-SQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYA  218 (980)
T ss_dssp             H-CCHHHHHHHHHHHHHHHHHHCCCCSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             C-ChhHHHHHHHHHHHHhHHHHHhcccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHH
Confidence            5 33 345556666664421   1      00  1     1222211   014445555532  1246678888998888


Q ss_pred             HHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhh-cCcHHHH
Q 015939          291 IVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQS-ENEGIVR  369 (398)
Q Consensus       291 ~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~-~~~~~~k  369 (398)
                      ..... -....+. +...++.+.+++.  ++..++.|+.+|..+.....+++.+..+++.=.+...+..+.. ..+....
T Consensus       219 s~i~w-i~~~~i~-~~~ll~~l~~~L~--~~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~  294 (980)
T 3ibv_A          219 QWVSW-ININLIV-NEPCMNLLYSFLQ--IEELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFD  294 (980)
T ss_dssp             HHTTT-SCHHHHH-CHHHHHHHHHHTT--SHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHH
T ss_pred             HHHhh-cCHHhhh-cchHHHHHHHHcC--ChHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHH
Confidence            87762 1223444 3466777776665  5889999999999988766544444444332111122222221 2345555


Q ss_pred             HHHHHHHHHHhc
Q 015939          370 KMCGDLVKVLGK  381 (398)
Q Consensus       370 ~~A~~lL~~l~~  381 (398)
                      ++-++++..+++
T Consensus       295 ~~la~L~~~~ge  306 (980)
T 3ibv_A          295 EHVAKLINAQGV  306 (980)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            555555544443

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=88.22  E-value=6  Score=38.12  Aligned_cols=121  Identities=13%  Similarity=0.157  Sum_probs=81.2

Q ss_pred             hcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHH
Q 015939          189 REGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQI  267 (398)
Q Consensus       189 ~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~  267 (398)
                      ..|+...+.-|+..|.....+ ++..      ..++..+++|..+. +..++..|++.|..+|.+ ++..+     .++.
T Consensus        38 ~kg~~k~K~LaaQ~I~kffk~FP~l~------~~Ai~a~lDLcEDe-d~~IR~qaik~Lp~~ck~-~~i~k-----iaDv  104 (507)
T 3u0r_A           38 VKGGTKEKRLAAQFIPKFFKHFPELA------DSAINAQLDLCEDE-DVSIRRQAIKELPQFATG-ENLPR-----VADI  104 (507)
T ss_dssp             GGSCHHHHHHHHHHHHHHGGGCGGGH------HHHHHHHHHHHTCS-SHHHHHHHHHHGGGGCCT-TCHHH-----HHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHhhChhhH------HHHHHHHHHHHhcc-cHHHHHHHHHhhHHHhhh-hhhhh-----HHHH
Confidence            356788999999999977665 5543      35788999999999 999999999999999998 66555     4567


Q ss_pred             HHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHH
Q 015939          268 LTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWS  333 (398)
Q Consensus       268 Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~  333 (398)
                      |+++|+.  +++.-....-..|..|-. ++.         |.+..+..-+..+++.+++.++..|..
T Consensus       105 L~QlLqt--dd~~E~~~V~~sL~sllk~Dpk---------~tl~~lf~~i~~~~e~~Rer~lkFi~~  160 (507)
T 3u0r_A          105 LTQLLQT--DDSAEFNLVNNALLSIFKMDAK---------GTLGGLFSQILQGEDIVRERAIKFLST  160 (507)
T ss_dssp             HHHHTTC--CCHHHHHHHHHHHHHHHHHCHH---------HHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHhc--cchHHHHHHHHHHHHHHhcChH---------HHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            9999963  344333333333333322 221         233334444444677777777777744

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=88.00  E-value=1.3  Score=36.21  Aligned_cols=73  Identities=12%  Similarity=0.090  Sum_probs=60.1

Q ss_pred             cHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          308 CAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       308 ~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      ++..|.+.|...++.++-.|+.+|-.+..+.+ .....++.....+..|+.++....++.+|+++..+++.-+.
T Consensus        53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG-~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~  125 (163)
T 1x5b_A           53 CLKAIMKRVNHKVPHVALQALTLLGACVANCG-KIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE  125 (163)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTC-HHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhh-HHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence            34457777778899999999999988887754 67777888888899999988765678999999999888776

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=85.76  E-value=40  Score=35.83  Aligned_cols=216  Identities=9%  Similarity=0.098  Sum_probs=121.2

Q ss_pred             cHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHcCCC-CchhHHHHHHHHHHHhhh-hhh----hhhhhhhcCCcHHHHH
Q 015939           66 NLTLHRLIAHWSHQ---LTVPEQEVRVWIEKIKSENE-SENSCVDYLVKVAKFATG-CEA----NRRFLASYGGFVEAVF  136 (398)
Q Consensus        66 n~~l~~~i~~~~~~---~p~p~~~i~~l~~~l~~~~~-~~~~~~~al~~L~~l~~~-~~~----~r~~i~~~~g~v~~L~  136 (398)
                      +...++.+..|.+.   .|   +........+..+.. +.+.+.-|+..|....+. .++    .+..+.      ..|+
T Consensus        21 d~~~r~~A~~~L~~~q~sp---~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr------~~ll   91 (980)
T 3ibv_A           21 GPIIKQQATDFIGSLRSSS---TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIR------DSVW   91 (980)
T ss_dssp             CHHHHHHHHHHHHHHHHST---THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHH------HHHH
T ss_pred             CHHHHHHHHHHHHHHHcCh---hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHH------HHHH
Confidence            45567777888753   33   244555555655431 334677788887765542 222    333333      3345


Q ss_pred             HHhhhcc--CCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCCh-hhHHHHHHHHHHhhcC--c-
Q 015939          137 GVLNRKR--RSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNL-DSKIGSIKILDSISLD--N-  210 (398)
Q Consensus       137 ~lL~~~~--~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~L~~~--~-  210 (398)
                      .++.+..  ....-++.+...+|..+....-.        -.=.+.++.++.++..++. .......++|..|..+  + 
T Consensus        92 ~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p--------~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~  163 (980)
T 3ibv_A           92 SYIKELSFLDEPAYISNAVQHLLTLLFLQLYP--------SNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADS  163 (980)
T ss_dssp             HHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT--------TTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc--------ccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhc
Confidence            5554311  12334556777777777643211        0124678888988887654 3333444455533332  0 


Q ss_pred             -------------hhHHHhhch--hhHHHHHHHHhcc---ccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHh
Q 015939          211 -------------ESKRRVLET--ENLLSALFDYLKL---AEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRIL  272 (398)
Q Consensus       211 -------------~~~~~i~~~--~g~i~~Lv~lL~~---~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL  272 (398)
                                   +.+..+...  ..+++....+|..   ..+++.+..++.+|......-+. ..+++.+.++.+..+|
T Consensus       164 ~~~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~~-~~i~~~~ll~~l~~~L  242 (980)
T 3ibv_A          164 LVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWINI-NLIVNEPCMNLLYSFL  242 (980)
T ss_dssp             CSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCH-HHHHCHHHHHHHHHHT
T ss_pred             ccccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcCH-HhhhcchHHHHHHHHc
Confidence                         012333221  1123444444443   12678889999999988775443 3445567888888888


Q ss_pred             cccCcchhhHHHHHHHHHHHhC---CHHHHHHHh
Q 015939          273 SDSRTQILTVEKSIKMLSIVAT---CSEGRLALS  303 (398)
Q Consensus       273 ~~~~~~~~~~~~al~~L~~La~---~~~~~~~i~  303 (398)
                      .    ++.+...|+.+|..+..   .++.+..+.
T Consensus       243 ~----~~~~r~~A~ecL~ei~~k~~~~~~k~~li  272 (980)
T 3ibv_A          243 Q----IEELRCAACETMTEIVNKKMKPLEKLNLL  272 (980)
T ss_dssp             T----SHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             C----ChHHHHHHHHHHHHHHHcCCChhhHHHHH
Confidence            4    47889999999988765   455555444

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=85.45  E-value=0.13  Score=30.09  Aligned_cols=18  Identities=28%  Similarity=0.455  Sum_probs=14.7

Q ss_pred             cccccCccccCCCceecC
Q 015939           13 LFRCPISLDVMKSPVSLC   30 (398)
Q Consensus        13 ~~~Cpi~~~~~~dPv~~~   30 (398)
                      -|+||+|..-+..|-.|.
T Consensus         5 GFiCP~C~~~l~s~~~L~   22 (34)
T 3mjh_B            5 GFICPQCMKSLGSADELF   22 (34)
T ss_dssp             EEECTTTCCEESSHHHHH
T ss_pred             ccCCcHHHHHcCCHHHHH
Confidence            599999999988886654

>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*

Probab=85.38  E-value=1.5  Score=38.09  Aligned_cols=72  Identities=17%  Similarity=0.124  Sum_probs=59.6

Q ss_pred             HHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          309 AGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       309 v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      +..|.+-|...++.++-.|+.+|..+..+.+ .....++.....+..|..+++....+.+|++...+++..+.
T Consensus        47 ~ral~krl~~~n~~v~l~aL~LLe~~vkNcG-~~f~~eias~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  118 (226)
T 3zyq_A           47 VNSIKKKVNDKNPHVALYALEVMESVVKNCG-QTVHDEVANKQTMEELKDLLKRQVEVNVRNKILYLIQAWAH  118 (226)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC-HHHHHHHSSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHhcc-hHHHHhhccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence            4457777778999999999999999888755 56777788888888888888777678999999999988876

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=85.18  E-value=11  Score=36.24  Aligned_cols=109  Identities=17%  Similarity=0.220  Sum_probs=67.3

Q ss_pred             HHHHHHHhhCCCC-HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHH
Q 015939           71 RLIAHWSHQLTVP-EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAV  149 (398)
Q Consensus        71 ~~i~~~~~~~p~p-~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~  149 (398)
                      ..|.+|+...|+- ...+..++......+..  .+.+|++.|-.+|++  ++   +.   .++..|+.+|.. .++  ..
T Consensus        50 Q~I~kffk~FP~l~~~Ai~a~lDLcEDed~~--IR~qaik~Lp~~ck~--~~---i~---kiaDvL~QlLqt-dd~--~E  116 (507)
T 3u0r_A           50 QFIPKFFKHFPELADSAINAQLDLCEDEDVS--IRRQAIKELPQFATG--EN---LP---RVADILTQLLQT-DDS--AE  116 (507)
T ss_dssp             HHHHHHGGGCGGGHHHHHHHHHHHHTCSSHH--HHHHHHHHGGGGCCT--TC---HH---HHHHHHHHHTTC-CCH--HH
T ss_pred             HHHHHHHhhChhhHHHHHHHHHHHHhcccHH--HHHHHHHhhHHHhhh--hh---hh---hHHHHHHHHHhc-cch--HH
Confidence            3455556677765 34456566666655544  789999999999977  22   33   446778888886 322  22


Q ss_pred             HHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHH
Q 015939          150 LESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILD  204 (398)
Q Consensus       150 ~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~  204 (398)
                      +...-.+|..+...++            .+.+..+..-+..++..+|+.+...|.
T Consensus       117 ~~~V~~sL~sllk~Dp------------k~tl~~lf~~i~~~~e~~Rer~lkFi~  159 (507)
T 3u0r_A          117 FNLVNNALLSIFKMDA------------KGTLGGLFSQILQGEDIVRERAIKFLS  159 (507)
T ss_dssp             HHHHHHHHHHHHHHCH------------HHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCh------------HHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            2333344544443222            134555666666678888998888886

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=84.76  E-value=24  Score=32.33  Aligned_cols=243  Identities=12%  Similarity=0.138  Sum_probs=159.8

Q ss_pred             hhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHH-HhhHhhhccCCChHHHHHHHhcC--ChhhHHHHHH
Q 015939          125 LASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKE-KLNRLILNTYNCLPLFLEILREG--NLDSKIGSIK  201 (398)
Q Consensus       125 i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~-~~~~~il~~~g~i~~Lv~lL~~~--~~~~~~~a~~  201 (398)
                      +-.. +.+..|+..|.. -+  -+.+..+..++.++.....+.. ....++...    |.++..|-.|  ++++-..+-.
T Consensus        74 i~~~-dll~~Li~~l~~-L~--fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~----peil~~L~~gYe~~diAl~~G~  145 (341)
T 1upk_A           74 LYNS-GLLSTLVADLQL-ID--FEGKKDVAQIFNNILRRQIGTRTPTVEYICTQ----QNILFMLLKGYESPEIALNCGI  145 (341)
T ss_dssp             HHHH-SHHHHHHHTGGG-SC--HHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTC----THHHHHHHHGGGSTTTHHHHHH
T ss_pred             HHHh-CHHHHHHHhccc-CC--chhhccHHHHHHHHHhcccCCCCchhHHHHcC----HHHHHHHHHhhccchhHhHHHH
Confidence            3344 778888887776 33  3445777777777776544311 111332223    3333444344  6777778888


Q ss_pred             HHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhc-CCcchHHHHHHcC---ChHHHHHHhcccCc
Q 015939          202 ILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLS-VYRSVKAQLVELG---MVQILTRILSDSRT  277 (398)
Q Consensus       202 ~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls-~~~~~~~~~v~~g---~v~~Lv~lL~~~~~  277 (398)
                      +|+....++.....+.. .+.+..+.+....+ +.++...|..++..|- .+......+.+.+   .+...-.+|.  ++
T Consensus       146 mLRecir~e~la~~iL~-~~~f~~fF~yv~~~-~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~--S~  221 (341)
T 1upk_A          146 MLRECIRHEPLAKIILW-SEQFYDFFRYVEMS-TFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLH--SE  221 (341)
T ss_dssp             HHHHHHTSHHHHHHHHH-SGGGGHHHHHTTCS-SHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTT--CS
T ss_pred             HHHHHHHhHHHHHHHhc-cHHHHHHHHHhcCC-CchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhc--CC
Confidence            99999999888888877 56677888999988 8999999999999884 4444444444322   3555667774  46


Q ss_pred             chhhHHHHHHHHHHHhCCHHHHHH---HhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhcc-CCChhHHHHHHhcCCH
Q 015939          278 QILTVEKSIKMLSIVATCSEGRLA---LSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCV-YKDARVKEAVVNSNGL  353 (398)
Q Consensus       278 ~~~~~~~al~~L~~La~~~~~~~~---i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~~~g~~  353 (398)
                      +--.++.++..|..|-.+..+..-   .+.+..-+..++.+|++.+...|-.|..+.--...+ ...+.+...++..-  
T Consensus       222 NYVTkRQSlKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr--  299 (341)
T 1upk_A          222 NYVTKRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQ--  299 (341)
T ss_dssp             SHHHHHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTH--
T ss_pred             cchhHHHHHHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHH--
Confidence            778889999999998876655443   344556688888889999999999999888665543 23344555554432  


Q ss_pred             HHHHHHHhh---c--CcHHHHHHHHHHHHHHhc
Q 015939          354 TKLLLVMQS---E--NEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       354 ~~Ll~~l~~---~--~~~~~k~~A~~lL~~l~~  381 (398)
                      .+|+..+..   +  .++...+-=.-+++.+.+
T Consensus       300 ~kLl~fl~~f~~d~~eDeqF~dEK~~lI~~I~~  332 (341)
T 1upk_A          300 AKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRD  332 (341)
T ss_dssp             HHHHHHHHHTTTTC-CCSHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCCCcchhhHHHHHHHHHHHHHh
Confidence            355555532   2  234555555567777666

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=83.72  E-value=2.8  Score=33.32  Aligned_cols=71  Identities=10%  Similarity=0.014  Sum_probs=56.6

Q ss_pred             HHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          309 AGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       309 v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      +..|.+-|...++.++-.|+.+|..+..+.| .....++.....+..|+.++... ++.+|++...+++..+.
T Consensus        44 ~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG-~~f~~evas~~Fl~el~~l~~~~-~~~Vk~kil~li~~W~~  114 (140)
T 3ldz_A           44 LRSIMRRVNHKDPHVAMQALTLLGACVSNCG-KIFHLEVCSRDFASEVSNVLNKG-HPKVCEKLKALMVEWTD  114 (140)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC-HHHHHHHSSHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCChHHHHHHHHHHHHHHHhcC-HHHHHHHhhHHHHHHHHHHhccC-CHHHHHHHHHHHHHHHH
Confidence            4456777777899999999999988887654 56677777777888888888654 78999999999988776

>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A

Probab=83.56  E-value=0.31  Score=27.05  Aligned_cols=20  Identities=20%  Similarity=0.173  Sum_probs=15.2

Q ss_pred             CCcccccCccccCCCceecC
Q 015939           11 PNLFRCPISLDVMKSPVSLC   30 (398)
Q Consensus        11 ~~~~~Cpi~~~~~~dPv~~~   30 (398)
                      |..|.||+|+..|-||=++.
T Consensus         1 ~~k~~CpvCk~q~Pd~kt~~   20 (28)
T 2jvx_A            1 SSDFCCPKCQYQAPDMDTLQ   20 (28)
T ss_dssp             CCCEECTTSSCEESSHHHHH
T ss_pred             CCcccCccccccCcChHHHH
Confidence            45789999999888875543

>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1

Probab=82.07  E-value=2.4  Score=36.50  Aligned_cols=72  Identities=15%  Similarity=0.113  Sum_probs=58.6

Q ss_pred             HHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          309 AGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       309 v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      +..|.+-|...++.++..|+.+|..+..+.+ .....++.....+..|..++....+..+|+++..+++.-+.
T Consensus        44 ~r~l~krl~~~n~~~~l~aL~Lle~~vkNcG-~~f~~eva~~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  115 (220)
T 1dvp_A           44 FAAIKKKMNSPNPHSSCYSLLVLESIVKNCG-APVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY  115 (220)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHSH-HHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHhccC-HHHHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence            4456667777899999999999999888754 56667777778888888888776678999999998888776

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=81.68  E-value=3.7  Score=32.96  Aligned_cols=73  Identities=12%  Similarity=0.071  Sum_probs=59.4

Q ss_pred             cHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhh-----cCcHHHHHHHHHHHHHHhc
Q 015939          308 CAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQS-----ENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       308 ~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~-----~~~~~~k~~A~~lL~~l~~  381 (398)
                      ++..|.+-+...++.++-.|+.+|..+..+.| .....++.....+..|+.++..     ..++.+|++...+++.-+.
T Consensus        49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG-~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  126 (149)
T 3g2s_A           49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCG-KRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV  126 (149)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCC-HHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcC-HHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence            34467777888999999999999999888755 6777888888889999988853     3468999999999988776

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=81.46  E-value=14  Score=33.34  Aligned_cols=150  Identities=16%  Similarity=0.149  Sum_probs=91.2

Q ss_pred             HHHHhhhc---cCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhc-cCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-
Q 015939          135 VFGVLNRK---RRSEIAVLESAVRVLNLIVNENGVKEKLNRLILN-TYNCLPLFLEILREGNLDSKIGSIKILDSISLD-  209 (398)
Q Consensus       135 L~~lL~~~---~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~-~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-  209 (398)
                      +..++++.   ..++....+.|+..|..++.+=.-.    ..|+. +...+..|+ +....++.+++.|+++|..-..+ 
T Consensus        27 ~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi~~G----~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNN  101 (315)
T 3qml_C           27 MRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDYKHG----YKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRNN  101 (315)
T ss_dssp             HHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSHHHH----HHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhHHhh----hHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHccC
Confidence            34555551   1224446788899998888643321    22232 323333333 22344678899999999977776 


Q ss_pred             chhHHHhhc-hhhHHHHHHHHhccc------cCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhH
Q 015939          210 NESKRRVLE-TENLLSALFDYLKLA------EDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTV  282 (398)
Q Consensus       210 ~~~~~~i~~-~~g~i~~Lv~lL~~~------~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~  282 (398)
                      +.....|.. ....+..+..-|...      ....+++.-+.+|-.|..+..   .+ ...++..|++++.....++.++
T Consensus       102 P~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~---~F-~~~~m~~L~~ly~~~~~d~~~k  177 (315)
T 3qml_C          102 PPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSE---DL-PIYSTVVLQNVYERNNKDKQLQ  177 (315)
T ss_dssp             HHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCST---TC---CCHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChH---hh-hhccHHHHHHHHccCCCCHHHH
Confidence            544444432 345666666555431      234577888999999987752   11 2457788888885322378899


Q ss_pred             HHHHHHHHHHh
Q 015939          283 EKSIKMLSIVA  293 (398)
Q Consensus       283 ~~al~~L~~La  293 (398)
                      .+++.++..+-
T Consensus       178 ~Kvl~li~d~f  188 (315)
T 3qml_C          178 IKVLELISKIL  188 (315)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHc
Confidence            99988888765

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=81.45  E-value=2.9  Score=34.50  Aligned_cols=73  Identities=12%  Similarity=0.042  Sum_probs=59.2

Q ss_pred             cHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhh-----cCcHHHHHHHHHHHHHHhc
Q 015939          308 CAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQS-----ENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       308 ~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~-----~~~~~~k~~A~~lL~~l~~  381 (398)
                      ++..|.+.|...++.++-.|+.+|-.+..+.+ .....++.....+..|+.++..     .....+|+++..+++.-+.
T Consensus        51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG-~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  128 (171)
T 1juq_A           51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCG-RRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM  128 (171)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSH-HHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC-HHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            34567777888999999999999999887754 5677788888899999988852     2357999999999988776

>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1

Probab=80.85  E-value=0.087  Score=38.49  Aligned_cols=40  Identities=28%  Similarity=0.397  Sum_probs=27.7

Q ss_pred             ccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939           14 FRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILS   59 (398)
Q Consensus        14 ~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~   59 (398)
                      ..||.|.+.|. +   ..|+.+|..|=..+ .. ...||.|+++|+
T Consensus        33 ~~CP~Cq~eL~-~---~g~~~hC~~C~~~f-~~-~a~CPdC~q~Le   72 (101)
T 2jne_A           33 LHCPQCQHVLD-Q---DNGHARCRSCGEFI-EM-KALCPDCHQPLQ   72 (101)
T ss_dssp             CBCSSSCSBEE-E---ETTEEEETTTCCEE-EE-EEECTTTCSBCE
T ss_pred             ccCccCCCcce-e---cCCEEECccccchh-hc-cccCcchhhHHH
Confidence            68999998875 2   34655588883332 21 347999999876

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=80.83  E-value=1.3  Score=43.63  Aligned_cols=153  Identities=14%  Similarity=0.136  Sum_probs=98.2

Q ss_pred             hhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHH
Q 015939          193 LDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRI  271 (398)
Q Consensus       193 ~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~l  271 (398)
                      ..+|+.|+.+|..+ .. ++.       ..++..|+..+..+ .-+++..++-.|..+   .+....  =.++++.++.-
T Consensus       242 APVRETaAQtLGaL-~hLp~e-------~~IL~qLV~~l~~~-~WEVRHGGLLGLKYL---~DLL~~--Ld~Vv~aVL~G  307 (800)
T 3oc3_A          242 APVRDAAAYLLSRI-YPLIGP-------NDIIEQLVGFLDSG-DWQVQFSGLIALGYL---KEFVED--KDGLCRKLVSL  307 (800)
T ss_dssp             CHHHHHHHHHHHHH-TTTSCS-------CCHHHHHTTGGGCS-CHHHHHHHHHHHHHT---GGGCCC--HHHHHHHHHHH
T ss_pred             eehHHHHHHHHHHH-HhCChh-------HHHHHHHHhhcCCC-CeeehhhhHHHHHHH---HHHHHH--HHHHHHHHHhh
Confidence            47899999999998 55 332       24566666666666 789999999999999   111100  13467788888


Q ss_pred             hcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHH----Hhcc--ChhHHHHHHHHHHHhhccCCChhHHH
Q 015939          272 LSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVER----VMKV--GKTAREDAVVVIWSMCCVYKDARVKE  345 (398)
Q Consensus       272 L~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~----l~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~  345 (398)
                      |+  +.|++|+..|+.+|.-++ .+          ..++.++..    |.+-  =..........|..|+....+     
T Consensus       308 L~--D~DDDVRAVAAetLiPIA-~p----------~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~-----  369 (800)
T 3oc3_A          308 LS--SPDEDIKLLSAELLCHFP-IT----------DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE-----  369 (800)
T ss_dssp             TT--CSSHHHHHHHHHHHTTSC-CS----------STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT-----
T ss_pred             cC--CcccHHHHHHHHHhhhhc-ch----------hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc-----
Confidence            84  478899999999999988 12          334444444    3331  122244556677777766321     


Q ss_pred             HHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHH
Q 015939          346 AVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKV  378 (398)
Q Consensus       346 ~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~  378 (398)
                      .......+|.|--.+... -..+|..+...|..
T Consensus       370 a~~dp~LVPRL~PFLRHt-ITSVR~AVL~TL~t  401 (800)
T 3oc3_A          370 LSIPPERLKDIFPCFTSP-VPEVRTSILNMVKN  401 (800)
T ss_dssp             CCCCSGGGGGTGGGGTCS-SHHHHHHHHHHTTT
T ss_pred             cccChHHHHHHHhhhcCC-cHHHHHHHHHHHHH
Confidence            011136677777777655 77888877665543

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=80.55  E-value=4.2  Score=43.61  Aligned_cols=99  Identities=7%  Similarity=0.025  Sum_probs=62.1

Q ss_pred             CHHHHHHHHHHHHHhcCCcc-h-HHHHHHcCChHHHHHHhcccC---cchhhHHHHHHHHHHHhCCHHHHHHHhhccCcH
Q 015939          235 DQALNDAILSILITLSVYRS-V-KAQLVELGMVQILTRILSDSR---TQILTVEKSIKMLSIVATCSEGRLALSEEASCA  309 (398)
Q Consensus       235 ~~~~~~~a~~aL~~Ls~~~~-~-~~~~v~~g~v~~Lv~lL~~~~---~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v  309 (398)
                      +...+++++.++..++.+.. . -..++. .+++.|+.++....   ....++..++++|...+.--........  ..+
T Consensus       466 ~W~~~EA~~~a~gaIa~~~~~~~e~~~l~-~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L~--~vl  542 (1023)
T 4hat_C          466 SWHNINTLSWAIGSISGTMSEDTEKRFVV-TVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR--TVI  542 (1023)
T ss_dssp             CHHHHHHHHHHHHHTTTSSCHHHHHHHHH-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHHH--HHH
T ss_pred             CHHHHHHHHHHHHHHHcCCCchhHHHHHH-HHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHHH--HHH
Confidence            67889999999999986543 2 222222 37788888874211   2223444667888776652221122221  344


Q ss_pred             HHHHHHHhccChhHHHHHHHHHHHhhc
Q 015939          310 GRVVERVMKVGKTAREDAVVVIWSMCC  336 (398)
Q Consensus       310 ~~Lv~~l~~~~~~~~~~a~~~L~~l~~  336 (398)
                      ..|++.|....+.+++.|+.++.++|.
T Consensus       543 ~~L~~~l~~~~~~v~~~A~~al~~l~~  569 (1023)
T 4hat_C          543 LKLFEFMHETHEGVQDMACDTFIKIVQ  569 (1023)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHH
Confidence            445555555678899999999999995

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=80.52  E-value=16  Score=39.14  Aligned_cols=143  Identities=6%  Similarity=0.021  Sum_probs=79.3

Q ss_pred             CChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccc----cCHHHHHHHHHHHHHhcCCcchHHHHHHcCCh
Q 015939          191 GNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLA----EDQALNDAILSILITLSVYRSVKAQLVELGMV  265 (398)
Q Consensus       191 ~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~----~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v  265 (398)
                      .+...++.++.+++.++.. .+....-.- ..+++.|+.+....    ..+-++..+++++...+..-........ .++
T Consensus       465 ~~W~~~eaal~algsia~~~~~~~e~~~l-~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~-~vl  542 (1049)
T 3m1i_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFV-VTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLR-TVI  542 (1049)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHH-HHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHH-HHH
T ss_pred             CCHHHHHHHHHHHHHHhcccCchhhHHHH-HHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHH-HHH
Confidence            3677889999999999865 111111111 34556666654321    1333333577777776643221122222 256


Q ss_pred             HHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHh-hcc----CcHHH----HHHHHhccChhHHHHHHHHHHHhhc
Q 015939          266 QILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALS-EEA----SCAGR----VVERVMKVGKTAREDAVVVIWSMCC  336 (398)
Q Consensus       266 ~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~-~~~----g~v~~----Lv~~l~~~~~~~~~~a~~~L~~l~~  336 (398)
                      +.+++.|.  ++++.++..|+.+|.+++..  .+..+. ...    ..++.    +..++..-+.........++..+..
T Consensus       543 ~~ll~~l~--~~~~~V~~~A~~al~~l~~~--~~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~  618 (1049)
T 3m1i_C          543 LKLFEFMH--ETHEGVQDMACDTFIKIVQK--CKYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS  618 (1049)
T ss_dssp             HHHHHHTT--SSCHHHHHHHHHHHHHHHHH--HTHHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhc--CCCHHHHHHHHHHHHHHHHH--HHHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            77777774  46789999999999999972  233332 011    22333    3344444455555666666666665


Q ss_pred             cCC
Q 015939          337 VYK  339 (398)
Q Consensus       337 ~~~  339 (398)
                      ..+
T Consensus       619 ~~~  621 (1049)
T 3m1i_C          619 EER  621 (1049)
T ss_dssp             TCC
T ss_pred             cCC
Confidence            443

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=80.37  E-value=4.8  Score=32.84  Aligned_cols=70  Identities=10%  Similarity=0.197  Sum_probs=55.2

Q ss_pred             ChHHHHHHHhcCChhhHHHHHHHHHHhhcC--chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhc
Q 015939          180 CLPLFLEILREGNLDSKIGSIKILDSISLD--NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLS  250 (398)
Q Consensus       180 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls  250 (398)
                      ++..|..-|.++++.++..|+.+|..+..+  ......+.. ..++..|+++++...++.++..++..|..-+
T Consensus        53 A~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas-~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~  124 (163)
T 1x5b_A           53 CLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCS-RDFATEVRAVIKNKAHPKVCEKLKSLMVEWS  124 (163)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTS-HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhh-HHHHHHHHHHHccCCCHHHHHHHHHHHHHHH
Confidence            355666667778888999999999999887  456667766 7899999999986457888888888877664

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=80.11  E-value=3  Score=33.49  Aligned_cols=73  Identities=11%  Similarity=0.035  Sum_probs=59.3

Q ss_pred             cHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhh-----cCcHHHHHHHHHHHHHHhc
Q 015939          308 CAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQS-----ENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       308 ~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~-----~~~~~~k~~A~~lL~~l~~  381 (398)
                      ++..|.+-|...++.++-.|+.+|-.+..+.| .....++.....+..|+.++..     ..+..+|++...+++.-+.
T Consensus        39 a~rai~krl~~~n~~vql~AL~LLe~~vkNCG-~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (148)
T 1mhq_A           39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCG-EKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV  116 (148)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC-HHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcC-HHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            34567777888999999999999999888755 6777888888889888888763     2367999999998888776

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	398
d1t1ha_	78	g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cre	1e-17
d2c2la2	80	g.44.1.2 (A:225-304) STIP1 homology and U box-cont	1e-12
d1wgma_	98	g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Hu	1e-11
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	5e-11
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	2e-08
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	3e-06
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	8e-05
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	0.002

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 78

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

 Score = 75.1 bits (184), Expect = 1e-17
 Identities = 36/67 (53%), Positives = 44/67 (65%)

Query: 10 VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTL 69
           P  FRCPISL++MK PV + TG TY+RSSIQ WL++GH TCP + + L      PN  L
Sbjct: 5  FPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVL 64

Query: 70 HRLIAHW 76
            LIA W
Sbjct: 65 KSLIALW 71

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 80

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.6 bits (146), Expect = 1e-12
 Identities = 19/67 (28%), Positives = 35/67 (52%)

Query: 10 VPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTL 69
          +P+     IS ++M+ P    +G+TYDR  I+  L+      P T   L+ ++ +PNL +
Sbjct: 4  IPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAM 63

Query: 70 HRLIAHW 76
            +I  +
Sbjct: 64 KEVIDAF 70

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]} Length = 98

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (141), Expect = 1e-11
 Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 2/74 (2%)

Query: 4  QELYIAVPNLFRCPISLDVMKSPVSLCTG-VTYDRSSIQHWLESGHDTCPATMQILSTKE 62
          +E Y    + F  PI   +M  PV L +  VT DRS+I   L S   T P     L+  +
Sbjct: 13 EETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQ 71

Query: 63 FVPNLTLHRLIAHW 76
            PN  L   I  W
Sbjct: 72 IRPNTELKEKIQRW 85

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (137), Expect = 5e-11
 Identities = 15/72 (20%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 4  QELYIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLES--GHDTCPATMQILSTK 61
          Q +  A+  +  CPI L+++K PVS      + +  +   L    G   CP     ++ +
Sbjct: 12 QNVINAMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKR 71

Query: 62 EFVPNLTLHRLI 73
              +    +L+
Sbjct: 72 SLQESTRFSQLV 83

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.8 bits (116), Expect = 2e-08
 Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 1/62 (1%)

Query: 5  ELYIAVPNLFR-CPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEF 63
          ELY  + + F+ C I  +  K       G     S +  W ES    CP     +   E 
Sbjct: 14 ELYCEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEP 73

Query: 64 VP 65
          + 
Sbjct: 74 IV 75

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.0 bits (101), Expect = 3e-06
 Identities = 9/52 (17%), Positives = 15/52 (28%)

Query: 14 FRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVP 65
            C I   ++  PV       + R  I   L+     CP+        +   
Sbjct: 24 ISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLES 75

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.8 bits (87), Expect = 8e-05
 Identities = 12/51 (23%), Positives = 25/51 (49%), Gaps = 2/51 (3%)

Query: 16 CPISLDVMK-SPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVP 65
          C IS  V +   +S  +   +++S ++ +++      P T + LS +E V 
Sbjct: 3  CAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVE 52

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (78), Expect = 0.002
 Identities = 10/54 (18%), Positives = 12/54 (22%), Gaps = 5/54 (9%)

Query: 15 RCPISLDVMKSP-----VSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEF 63
           CP              +    G T   S +      G   CP     L    F
Sbjct: 5  GCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	398
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.91
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.9
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.89
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.89
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	99.89
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.88
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.88
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	99.88
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.87
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	99.85
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.8
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.79
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.76
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.67
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.62
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.62
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	99.58
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.46
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.35
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.29
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.21
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.11
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.04
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.76
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.63
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	98.55
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.49
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.41
d1b3ua_	588	Constant regulatory domain of protein phosphatase	98.39
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.28
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	98.21
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.19
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.11
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.05
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	97.89
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	97.86
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.84
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	97.84
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.71
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	97.67
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	97.66
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	97.66
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.63
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.59
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	97.4
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.36
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	97.26
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	96.94
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	96.85
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	94.67
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	94.65
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	93.87
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	93.37
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	91.65
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	90.14
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	89.61
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	88.79
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	87.0
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	83.36
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	81.98
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	81.0
d1weoa_	93	Cellulose synthase A catalytic subunit 7, IRX3 {Th	80.36

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=3.7e-23  Score=205.46  Aligned_cols=279  Identities=16%  Similarity=0.113  Sum_probs=237.1

Q ss_pred             HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939           85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN  164 (398)
Q Consensus        85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~  164 (398)
                      +.++.+++.|.+.+. .+.+..|+..|..++. ++.++..+.+. |+++.|+.+|++ .+  ..++..|+++|.+++.+.
T Consensus        59 ~~v~~l~~~L~~~~~-~~~~~~a~~~L~~l~~-~~~~~~~i~~~-g~i~~Li~lL~~-~~--~~v~~~a~~aL~~l~~~~  132 (529)
T d1jdha_          59 QMVSAIVRTMQNTND-VETARCTAGTLHNLSH-HREGLLAIFKS-GGIPALVKMLGS-PV--DSVLFYAITTLHNLLLHQ  132 (529)
T ss_dssp             HHHHHHHHHHHHCCC-HHHHHHHHHHHHHHTT-SHHHHHHHHHT-THHHHHHHHTTC-SC--HHHHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHcCCCC-HHHHHHHHHHHHHHhC-CchhHHHHHHC-CCHHHHHHHhCC-CC--HHHHHHHHHHHHHhhccc
Confidence            457788888876554 2477889999999985 57788999999 999999999987 44  457799999999999876


Q ss_pred             chHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHH
Q 015939          165 GVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAIL  243 (398)
Q Consensus       165 ~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~  243 (398)
                      +..   +.. +.+.|+++.|+.+|++++.+++..++.+|.+++.. ++.+..+.. .|++++|+.+|....+...+..++
T Consensus       133 ~~~---~~~-~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~~~~~~L~~ll~~~~~~~~~~~~~  207 (529)
T d1jdha_         133 EGA---KMA-VRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILA-SGGPQALVNIMRTYTYEKLLWTTS  207 (529)
T ss_dssp             TTH---HHH-HHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             chh---hhH-HHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHh-cccchHHHHHHHhhhhHHHHHHHH
Confidence            652   444 77899999999999999999999999999999976 556666666 899999999998876778999999


Q ss_pred             HHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhH
Q 015939          244 SILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTA  323 (398)
Q Consensus       244 ~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~  323 (398)
                      .++.+++.+.+++..+++.|+++.|+.++.  +.+.+++..++++|.+++.....  ... ..|+++.|++++..++..+
T Consensus       208 ~~l~~ls~~~~~~~~~~~~g~~~~L~~ll~--~~~~~~~~~a~~~l~~ls~~~~~--~~~-~~~~i~~Lv~ll~~~~~~~  282 (529)
T d1jdha_         208 RVLKVLSVCSSNKPAIVEAGGMQALGLHLT--DPSQRLVQNCLWTLRNLSDAATK--QEG-MEGLLGTLVQLLGSDDINV  282 (529)
T ss_dssp             HHHHHHTTSTTHHHHHHHTTHHHHHHTTTT--SSCHHHHHHHHHHHHHHHTTCTT--CSC-CHHHHHHHHHHTTCSCHHH
T ss_pred             HHHhhhhccccccchhhhhhhhhhHHHHhc--ccchhhhhhhhhHHHhccccccc--hhh-hhhcchhhhhhcccccHHH
Confidence            999999999999999999999999999995  47889999999999999864332  222 3488999999999999999


Q ss_pred             HHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhh-cCcHHHHHHHHHHHHHHhc
Q 015939          324 REDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQS-ENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       324 ~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~-~~~~~~k~~A~~lL~~l~~  381 (398)
                      ++.|+.+|++++..+  ++.+..+.+.|+++.|+..+.. ...+.+++.|..+|+.+..
T Consensus       283 ~~~a~~~L~~l~~~~--~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~  339 (529)
T d1jdha_         283 VTCAAGILSNLTCNN--YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTS  339 (529)
T ss_dssp             HHHHHHHHHHHTTTC--HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHhhccch--hHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccc
Confidence            999999999999753  6788889999999999998853 4467889999999998875

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=1.9e-23  Score=207.53  Aligned_cols=277  Identities=13%  Similarity=0.113  Sum_probs=232.5

Q ss_pred             HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939           85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN  164 (398)
Q Consensus        85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~  164 (398)
                      ..++.|++.|++.+..  .+..|+..|..+++.+ ..|..+...+|+++.|+.+|.+ .+ +.++++.|+.+|.+++.++
T Consensus        17 ~aip~L~~lL~~~~~~--v~~~A~~~l~~l~~~~-~~~~~~~~~~~~v~~l~~~L~~-~~-~~~~~~~a~~~L~~l~~~~   91 (529)
T d1jdha_          17 RAIPELTKLLNDEDQV--VVNKAAVMVHQLSKKE-ASRHAIMRSPQMVSAIVRTMQN-TN-DVETARCTAGTLHNLSHHR   91 (529)
T ss_dssp             CHHHHHHHHHTCSCHH--HHHHHHHHHHHHHTSH-HHHHHHHTCHHHHHHHHHHHHH-CC-CHHHHHHHHHHHHHHTTSH
T ss_pred             HHHHHHHHHHcCCCHH--HHHHHHHHHHHHHhcc-HHHHHHHHhhhHHHHHHHHHcC-CC-CHHHHHHHHHHHHHHhCCc
Confidence            3588899999877654  8999999999998764 4555555544899999999987 32 3456799999999998765


Q ss_pred             chHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCc-hhHHHhhchhhHHHHHHHHhccccCHHHHHHHH
Q 015939          165 GVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDN-ESKRRVLETENLLSALFDYLKLAEDQALNDAIL  243 (398)
Q Consensus       165 ~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~  243 (398)
                      +.    +.. +.+.|+++.|+.+|++++.+++..|+++|.+|+.+. ..+..+.. .|+++.|+.+|+++ +++.+..++
T Consensus        92 ~~----~~~-i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~-~g~i~~Lv~lL~~~-~~~~~~~a~  164 (529)
T d1jdha_          92 EG----LLA-IFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRL-AGGLQKMVALLNKT-NVKFLAITT  164 (529)
T ss_dssp             HH----HHH-HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHH-HTHHHHHHHGGGCC-CHHHHHHHH
T ss_pred             hh----HHH-HHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHh-cCCchHHHHHHHcc-ChHHHHHHH
Confidence            54    565 678899999999999999999999999999999884 45566666 89999999999998 899999999


Q ss_pred             HHHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChh
Q 015939          244 SILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKT  322 (398)
Q Consensus       244 ~aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~  322 (398)
                      .+|.+|+..+ +++..+++.|+++.|+.+++. ..+..+...+..+|.+++.+++++..+. ..|+++.|+.++..++..
T Consensus       165 ~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~-~~~~~~~~~~~~~l~~ls~~~~~~~~~~-~~g~~~~L~~ll~~~~~~  242 (529)
T d1jdha_         165 DCLQILAYGNQESKLIILASGGPQALVNIMRT-YTYEKLLWTTSRVLKVLSVCSSNKPAIV-EAGGMQALGLHLTDPSQR  242 (529)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTTSTTHHHHHH-HTTHHHHHHTTTTSSCHH
T ss_pred             HHHHHHhhhhhHHHHHHHhcccchHHHHHHHh-hhhHHHHHHHHHHHhhhhccccccchhh-hhhhhhhHHHHhcccchh
Confidence            9999998654 567777899999999999974 4567899999999999999999999998 469999999999999999


Q ss_pred             HHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          323 AREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       323 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      .+.+++.+|.+++.....     .....|+++.|+.++.++ +..+++.|..+|..++.
T Consensus       243 ~~~~a~~~l~~ls~~~~~-----~~~~~~~i~~Lv~ll~~~-~~~~~~~a~~~L~~l~~  295 (529)
T d1jdha_         243 LVQNCLWTLRNLSDAATK-----QEGMEGLLGTLVQLLGSD-DINVVTCAAGILSNLTC  295 (529)
T ss_dssp             HHHHHHHHHHHHHTTCTT-----CSCCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHTT
T ss_pred             hhhhhhhHHHhccccccc-----hhhhhhcchhhhhhcccc-cHHHHHHHHHHHHhhcc
Confidence            999999999999864321     223357899999999876 78999999999998864

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=3e-21  Score=190.41  Aligned_cols=281  Identities=12%  Similarity=0.098  Sum_probs=235.7

Q ss_pred             HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc
Q 015939           86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG  165 (398)
Q Consensus        86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~  165 (398)
                      .++.++..++++.. .+.+..|++.|.+++..++.....+.+. |+++.|+.+|.+ .+  .++.+.|+++|.+++.++.
T Consensus       120 ~i~~Lv~~l~~~~~-~~iq~~a~~~L~ni~~~~~~~~~~~~~~-g~i~~l~~lL~s-~~--~~i~~~a~~~L~nia~~~~  194 (503)
T d1wa5b_         120 VVPRLVEFMRENQP-EMLQLEAAWALTNIASGTSAQTKVVVDA-DAVPLFIQLLYT-GS--VEVKEQAIWALGNVAGDST  194 (503)
T ss_dssp             CHHHHHHTTSTTSC-HHHHHHHHHHHHHHTTSCHHHHHHHHHT-TCHHHHHHHHHH-CC--HHHHHHHHHHHHHHHTTCH
T ss_pred             ChHHHHHHHcCCCC-HHHHHHHHHHHHHHHcCCHHHHHHHHhC-CChHHHHHHhcC-CC--hhHHHHHHHHHHHHhhhhH
Confidence            36677877775443 3467889999999998888888888888 999999999998 43  4577999999999998655


Q ss_pred             hHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHH
Q 015939          166 VKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSI  245 (398)
Q Consensus       166 ~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~a  245 (398)
                      .   +|.. +...|+++.|+.++.+.+.+++..++++|.+++.............++++.|+.++.+. +++.+..++++
T Consensus       195 ~---~r~~-l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~-d~~~~~~~~~~  269 (503)
T d1wa5b_         195 D---YRDY-VLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSM-DTETLVDACWA  269 (503)
T ss_dssp             H---HHHH-HHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCC-CHHHHHHHHHH
T ss_pred             H---HHHH-HHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccc-cHHHHHHHHHH
Confidence            4   3555 77899999999999999999999999999999987433322222368999999999998 89999999999


Q ss_pred             HHHhcCCcc-hHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHH
Q 015939          246 LITLSVYRS-VKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAR  324 (398)
Q Consensus       246 L~~Ls~~~~-~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~  324 (398)
                      |.+|+...+ ....+++.|+++.++.++.  ++++.+...++.+|.+++.+...........|+++.+..++...++.++
T Consensus       270 l~~l~~~~~~~~~~~~~~~~~~~l~~ll~--~~~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~  347 (503)
T d1wa5b_         270 ISYLSDGPQEAIQAVIDVRIPKRLVELLS--HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIK  347 (503)
T ss_dssp             HHHHHSSCHHHHHHHHHTTCHHHHHHGGG--CSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHH
T ss_pred             HHhhccCCchhhhhhhhhhhhhhhhhccc--CCchhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHH
Confidence            999997665 5566789999999999995  4788999999999999998555444443367999999999999999999


Q ss_pred             HHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          325 EDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       325 ~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      +.++.+|.+++.++  +.....+++.|+++.++..+..+ +..+|..|.++|..+..
T Consensus       348 ~~~~~~l~nl~~~~--~~~~~~i~~~~~l~~li~~l~~~-~~~v~~~a~~~l~nl~~  401 (503)
T d1wa5b_         348 KEACWTISNITAGN--TEQIQAVIDANLIPPLVKLLEVA-EYKTKKEACWAISNASS  401 (503)
T ss_dssp             HHHHHHHHHHTTSC--HHHHHHHHHTTCHHHHHHHHHHS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcc--HHHHHHHHHccccchhHHhcccC-ChhHHHHHHHHHHHHHh
Confidence            99999999998753  67888899999999999999887 78999999999988876

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=9.5e-22  Score=189.53  Aligned_cols=282  Identities=12%  Similarity=0.110  Sum_probs=231.6

Q ss_pred             HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhh-hhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939           85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEA-NRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE  163 (398)
Q Consensus        85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~-~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~  163 (398)
                      -.+..+++.+.+++.+  .+..|+..|+++.+.+.. ..+.+.+. |++|.|+++|++ . .+.+++..|+++|.+++..
T Consensus        13 ~~i~~lv~~l~s~~~~--~~~~a~~~l~~l~s~~~~~~~~~i~~~-g~i~~Lv~lL~~-~-~~~~v~~~a~~~L~~la~~   87 (434)
T d1q1sc_          13 WSVEDIVKGINSNNLE--SQLQATQAARKLLSREKQPPIDNIIRA-GLIPKFVSFLGK-T-DCSPIQFESAWALTNIASG   87 (434)
T ss_dssp             CCHHHHHHHHTSSCHH--HHHHHHHHHHHHHHSSSCCCHHHHHHT-TCHHHHHHHTTC-G-GGHHHHHHHHHHHHHHHTS
T ss_pred             hhHHHHHHHHcCCCHH--HHHHHHHHHHHHhcCCCCchHHHHHHC-CCHHHHHHHHcc-C-CCHHHHHHHHHHHHHHhcC
Confidence            3578899999988765  899999999988754333 24678888 999999999976 3 2346779999999999876


Q ss_pred             cchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhcccc----CHHH
Q 015939          164 NGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAE----DQAL  238 (398)
Q Consensus       164 ~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~----~~~~  238 (398)
                      ++.   .+.. +.+.|+++.|+.+|.+++.++++.|+++|.+|+.+ ++.+..+.. .|+++.|+.++....    ....
T Consensus        88 ~~~---~~~~-i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~-~~~~~~l~~~l~~~~~~~~~~~~  162 (434)
T d1q1sc_          88 TSE---QTKA-VVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIK-HGAIDPLLALLAVPDLSTLACGY  162 (434)
T ss_dssp             CHH---HHHH-HHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHHTCSSCGGGSCHHH
T ss_pred             Chh---hhhH-hhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHH-hhhhhHHHHHHHhcccccchHHH
Confidence            554   2455 77999999999999999999999999999999987 566777776 899999999998752    2345


Q ss_pred             HHHHHHHHHHhcCCcchH-HHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHh
Q 015939          239 NDAILSILITLSVYRSVK-AQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVM  317 (398)
Q Consensus       239 ~~~a~~aL~~Ls~~~~~~-~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~  317 (398)
                      ...+++++.+++.+.... ......++++.|+.++.  +.+++++..++++|.+|+.++..+..+....|+++.+++++.
T Consensus       163 ~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~--~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~  240 (434)
T d1q1sc_         163 LRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLH--HNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG  240 (434)
T ss_dssp             HHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHh--ccccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccc
Confidence            677888899998765433 33346778999999994  478899999999999999866555444446799999999999


Q ss_pred             ccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          318 KVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       318 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      .++...+..|+.+|.+++..  +++.+..+++.|+++.+..++++. ++.+|+.|..+|..+..
T Consensus       241 ~~~~~~~~~al~~l~~l~~~--~~~~~~~~~~~~~~~~l~~ll~~~-~~~v~~~a~~~L~~l~~  301 (434)
T d1q1sc_         241 ATELPIVTPALRAIGNIVTG--TDEQTQKVIDAGALAVFPSLLTNP-KTNIQKEATWTMSNITA  301 (434)
T ss_dssp             CSCHHHHHHHHHHHHHHTTS--CHHHHHHHHHTTGGGGHHHHTTCS-SHHHHHHHHHHHHHHTT
T ss_pred             cchhhhhhchhhhhhhHHhh--hhHHHHHHHhccccchHHHhhccc-chhhhHHHHHHHhhhcc
Confidence            99999999999999999975  367888899999999999999876 78899999999999986

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.89  E-value=6.5e-24  Score=155.56  Aligned_cols=75  Identities=25%  Similarity=0.461  Sum_probs=70.4

Q ss_pred             cCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHHhhCCC
Q 015939            8 IAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSHQLTV   82 (398)
Q Consensus         8 ~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~p~   82 (398)
                      .++|++|.||||.++|+|||+++|||||||.||.+|+..+..+||.|++++...++.||..|+++|+.|.+++|.
T Consensus         2 ~eiP~~l~CpIc~~l~~dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~l~pN~~L~~~I~~~l~~~~~   76 (80)
T d2c2la2           2 RDIPDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLIPNLAMKEVIDAFISENGW   76 (80)
T ss_dssp             CCCCSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCEECHHHHHHHHHHHTTCSC
T ss_pred             CCCCccccCcCcCchhhhhcccCCcCeecHHHHHHHHhcCCccCCCccccccccccccHHHHHHHHHHHHHHCCC
Confidence            579999999999999999999999999999999999987778899999999999999999999999999987653

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=2.5e-21  Score=190.97  Aligned_cols=279  Identities=15%  Similarity=0.166  Sum_probs=234.1

Q ss_pred             HHHHHHHHHHcCCCCchhHHHHHHHHHHHhh-hhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939           86 EVRVWIEKIKSENESENSCVDYLVKVAKFAT-GCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN  164 (398)
Q Consensus        86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~-~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~  164 (398)
                      .++.++..+.+.+.+  .+..|+..++++.. ......+.+.+. |+++.|+.+|.+ . .+..++..|+++|.+++..+
T Consensus        77 ~l~~~~~~~~s~~~~--~~~~a~~~~r~~ls~~~~~~i~~ii~~-g~i~~Lv~~l~~-~-~~~~iq~~a~~~L~ni~~~~  151 (503)
T d1wa5b_          77 ELPQMTQQLNSDDMQ--EQLSATVKFRQILSREHRPPIDVVIQA-GVVPRLVEFMRE-N-QPEMLQLEAAWALTNIASGT  151 (503)
T ss_dssp             CHHHHHHHHSCSSHH--HHHHHHHHHHHHTCCSSSCSHHHHHHT-TCHHHHHHTTST-T-SCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHhcCCCHH--HHHHHHHHHHHHHhcCCCchHHHHHHC-CChHHHHHHHcC-C-CCHHHHHHHHHHHHHHHcCC
Confidence            467788888777654  78899999998764 334445678888 999999999986 2 23456789999999999876


Q ss_pred             chHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHH
Q 015939          165 GVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAIL  243 (398)
Q Consensus       165 ~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~  243 (398)
                      +.    ....+...|+++.++.+|.+++.+++..|+++|.+|+.+ ++.+..+.. .|++++|+.++.+. ++.+++.++
T Consensus       152 ~~----~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~-~~~~~~L~~ll~~~-~~~~~~~~~  225 (503)
T d1wa5b_         152 SA----QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQ-CNAMEPILGLFNSN-KPSLIRTAT  225 (503)
T ss_dssp             HH----HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTCHHHHHHGGGSC-CHHHHHHHH
T ss_pred             HH----HHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHh-hcccccchhhcccC-CHHHHHHHH
Confidence            54    233367899999999999999999999999999999876 678888887 89999999999988 888999999


Q ss_pred             HHHHHhcCCcch-HHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhccCh
Q 015939          244 SILITLSVYRSV-KAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMKVGK  321 (398)
Q Consensus       244 ~aL~~Ls~~~~~-~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~~~~  321 (398)
                      ++|.+|+.+... .......|+++.|+.++.  +.+++++..++++|.+|+. .++....+. ..|+++.++.++..++.
T Consensus       226 ~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~--~~d~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~~l~~ll~~~~~  302 (503)
T d1wa5b_         226 WTLSNLCRGKKPQPDWSVVSQALPTLAKLIY--SMDTETLVDACWAISYLSDGPQEAIQAVI-DVRIPKRLVELLSHEST  302 (503)
T ss_dssp             HHHHHHHCCSSSCCCHHHHGGGHHHHHHHTT--CCCHHHHHHHHHHHHHHHSSCHHHHHHHH-HTTCHHHHHHGGGCSCH
T ss_pred             HHHHHHhcCCccchHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHhhccCCchhhhhhh-hhhhhhhhhhcccCCch
Confidence            999999976543 333456789999999995  4789999999999999997 455566677 57999999999999999


Q ss_pred             hHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          322 TAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       322 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      .++..|+.+|.+++...  .+....+.+.|+++.|..++++. ++.+++.+.++|..+..
T Consensus       303 ~v~~~al~~l~nl~~~~--~~~~~~~~~~~~l~~l~~ll~~~-~~~i~~~~~~~l~nl~~  359 (503)
T d1wa5b_         303 LVQTPALRAVGNIVTGN--DLQTQVVINAGVLPALRLLLSSP-KENIKKEACWTISNITA  359 (503)
T ss_dssp             HHHHHHHHHHHHHTTSC--HHHHHHHHHTTHHHHHHHHTTCS-CHHHHHHHHHHHHHHTT
T ss_pred             hhhhhHHHHHHHHHHHH--HHHHHhhhccchHHHHHHHhcCC-CHHHHHHHHHHHHHHhh
Confidence            99999999999999753  67778889999999999999876 78999999999998875

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.88  E-value=9.5e-21  Score=182.42  Aligned_cols=280  Identities=14%  Similarity=0.132  Sum_probs=232.1

Q ss_pred             HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc
Q 015939           86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG  165 (398)
Q Consensus        86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~  165 (398)
                      .++.|++.|++.+. .+.+..|++.|.+++..++..+..+.+. |+++.|+.+|.+ .  +..+++.|+++|.+++.+++
T Consensus        57 ~i~~Lv~lL~~~~~-~~v~~~a~~~L~~la~~~~~~~~~i~~~-~~i~~l~~~L~~-~--~~~~~~~a~~~L~nl~~~~~  131 (434)
T d1q1sc_          57 LIPKFVSFLGKTDC-SPIQFESAWALTNIASGTSEQTKAVVDG-GAIPAFISLLAS-P--HAHISEQAVWALGNIAGDGS  131 (434)
T ss_dssp             CHHHHHHHTTCGGG-HHHHHHHHHHHHHHHTSCHHHHHHHHHT-THHHHHHHHTTC-S--CHHHHHHHHHHHHHHHTTCH
T ss_pred             CHHHHHHHHccCCC-HHHHHHHHHHHHHHhcCChhhhhHhhhc-cchhhhhhcccc-C--CHHHHHHHHHHHHHHhccch
Confidence            46788888865543 3467889999999998888889899999 999999999987 4  35677999999999998665


Q ss_pred             hHHHhhHhhhccCCChHHHHHHHhcCCh-----hhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHH
Q 015939          166 VKEKLNRLILNTYNCLPLFLEILREGNL-----DSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALND  240 (398)
Q Consensus       166 ~~~~~~~~il~~~g~i~~Lv~lL~~~~~-----~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~  240 (398)
                      .   .+.. +...|+++.|+.++...+.     .....+++++.+++........+....++++.|+.++.+. +++++.
T Consensus       132 ~---~~~~-i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~-~~~~~~  206 (434)
T d1q1sc_         132 A---FRDL-VIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHN-DPEVLA  206 (434)
T ss_dssp             H---HHHH-HHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCS-CHHHHH
T ss_pred             H---HHHH-HHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhcc-ccchhh
Confidence            4   3555 6788999999999986643     3456678889999887543333333378999999999988 899999


Q ss_pred             HHHHHHHHhcCCcc-hHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhhccCcHHHHHHHHhc
Q 015939          241 AILSILITLSVYRS-VKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSEEASCAGRVVERVMK  318 (398)
Q Consensus       241 ~a~~aL~~Ls~~~~-~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~~~g~v~~Lv~~l~~  318 (398)
                      .++++|.+|+..+. ....+.+.|+++.|++++.  +++..++..++.+|.+++. +++.+..+. +.|+++.++.++..
T Consensus       207 ~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~--~~~~~~~~~al~~l~~l~~~~~~~~~~~~-~~~~~~~l~~ll~~  283 (434)
T d1q1sc_         207 DSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLG--ATELPIVTPALRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTN  283 (434)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHT--CSCHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTGGGGHHHHTTC
T ss_pred             hHHhhhcccchhhhhhHHHHhhcccchhcccccc--cchhhhhhchhhhhhhHHhhhhHHHHHHH-hccccchHHHhhcc
Confidence            99999999998765 4455568999999999995  4789999999999999988 556667777 56999999999999


Q ss_pred             cChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          319 VGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       319 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      .++.+++.|+.+|.+++...  ++....+.+.|+++.++..+..+ +..+|..|.++|..+..
T Consensus       284 ~~~~v~~~a~~~L~~l~~~~--~~~~~~i~~~~~i~~li~~l~~~-~~~v~~~a~~~l~nl~~  343 (434)
T d1q1sc_         284 PKTNIQKEATWTMSNITAGR--QDQIQQVVNHGLVPFLVGVLSKA-DFKTQKEAAWAITNYTS  343 (434)
T ss_dssp             SSHHHHHHHHHHHHHHTTSC--HHHHHHHHHTTCHHHHHHHHHSS-CHHHHHHHHHHHHHHHH
T ss_pred             cchhhhHHHHHHHhhhcccc--chhHHHHhhhhhHHHHHHHHhcc-ChHHHHHHHHHHHHHHh
Confidence            99999999999999999753  67888899999999999999877 78999999999988875

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.88  E-value=9.5e-24  Score=153.98  Aligned_cols=74  Identities=49%  Similarity=0.910  Sum_probs=69.0

Q ss_pred             ccCCCCcccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHHhhC
Q 015939            7 YIAVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSHQL   80 (398)
Q Consensus         7 ~~~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~~   80 (398)
                      ..++|++|.||||+++|+|||+++|||+|||.||++|+..+...||.|+.++...++.||..|+++|+.|.+++
T Consensus         2 ~peiP~~l~CpIc~~~m~dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~l~pN~~L~~~I~~~~~~~   75 (78)
T d1t1ha_           2 SPEFPEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAGLTPNYVLKSLIALWCESN   75 (78)
T ss_dssp             CCCCSSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCCCEECTTTHHHHHHHHHHS
T ss_pred             CCCCCccCCCcCcCchhhCceEccCCCcchHHHHHHHHHHCCCCCCcccccCCcccccchHHHHHHHHHHHHHh
Confidence            34799999999999999999999999999999999999877778999999999999999999999999998653

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1.6e-20  Score=179.49  Aligned_cols=281  Identities=12%  Similarity=0.092  Sum_probs=223.4

Q ss_pred             HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc
Q 015939           86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG  165 (398)
Q Consensus        86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~  165 (398)
                      .++.|++.|++++.+  .+..|+..|.++|.+++++|..+.+. |+||.|+++|++ .  +..+++.|+++|.+|+.+++
T Consensus         3 ~ip~lv~~L~~~~~~--~~~~a~~~l~~l~~~~~~~~~~i~~~-g~i~~Lv~lL~~-~--~~~v~~~a~~aL~~L~~~~~   76 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEK--YQAIGAYYIQHTCFQDESAKQQVYQL-GGICKLVDLLRS-P--NQNVQQAAAGALRNLVFRST   76 (457)
T ss_dssp             CHHHHHHHHHSSCTH--HHHHHHHHHHHHTSSCSSHHHHHHHT-THHHHHHHHTTS-S--CHHHHHHHHHHHHHHHSSCH
T ss_pred             CHHHHHHHhCCCCHH--HHHHHHHHHHHHHcCCHHHHHHHHHC-CcHHHHHHHHCC-C--CHHHHHHHHHHHHHHHcCCH
Confidence            378899999988876  99999999999999999999999999 999999999987 3  45677999999999997655


Q ss_pred             hHHHhhHhhhccCCChHHHHHHHhcC-ChhhHHHHHHHHHHhhcCc----------------------------------
Q 015939          166 VKEKLNRLILNTYNCLPLFLEILREG-NLDSKIGSIKILDSISLDN----------------------------------  210 (398)
Q Consensus       166 ~~~~~~~~il~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~~----------------------------------  210 (398)
                      +   ++.. +.+.|+++.|+.++.+. +.+++..|+++|.+++.++                                  
T Consensus        77 ~---~~~~-i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  152 (457)
T d1xm9a1          77 T---NKLE-TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSR  152 (457)
T ss_dssp             H---HHHH-HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC--------
T ss_pred             H---HHHH-HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhc
Confidence            4   3555 77889999999999754 7778888888888876543                                  


Q ss_pred             ----------------------hhHHHhhchhhHHHHHHHHhcc------------------------------------
Q 015939          211 ----------------------ESKRRVLETENLLSALFDYLKL------------------------------------  232 (398)
Q Consensus       211 ----------------------~~~~~i~~~~g~i~~Lv~lL~~------------------------------------  232 (398)
                                            +++..+....|+++.|+.++++                                    
T Consensus       153 ~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  232 (457)
T d1xm9a1         153 EVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQ  232 (457)
T ss_dssp             -CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHH
T ss_pred             ccccHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence                                  2222222224666766655421                                    


Q ss_pred             --------------------------------------------------------------ccCHHHHHHHHHHHHHhc
Q 015939          233 --------------------------------------------------------------AEDQALNDAILSILITLS  250 (398)
Q Consensus       233 --------------------------------------------------------------~~~~~~~~~a~~aL~~Ls  250 (398)
                                                                                    ..++..+..+..++.+++
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~  312 (457)
T d1xm9a1         233 LEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLT  312 (457)
T ss_dssp             HHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred             HHhhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHh
Confidence                                                                          112345556777788876


Q ss_pred             CCcc------hHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhc------
Q 015939          251 VYRS------VKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMK------  318 (398)
Q Consensus       251 ~~~~------~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~------  318 (398)
                      ....      .+..+.+.|+++.|++++.  +.++.++..++.+|.+|+.+++++..+.+  ++++.++.++..      
T Consensus       313 ~~~~~~~~~~~~~~~~~~~~l~~L~~~l~--~~~~~v~~~a~~~l~~La~~~~~~~~i~~--~~i~~li~~L~~~~~~~~  388 (457)
T d1xm9a1         313 ASKGLMSSGMSQLIGLKEKGLPQIARLLQ--SGNSDVVRSGASLLSNMSRHPLLHRVMGN--QVFPEVTRLLTSHTGNTS  388 (457)
T ss_dssp             TCSSSHHHHHHHHHHTTSCCHHHHHHHTT--CSCHHHHHHHHHHHHHHHTSGGGHHHHHH--HTHHHHHHTTTSCCSCST
T ss_pred             hccccchHHHHHHHHHHcCChHHHHhhhc--CccHHHHHHHHHHHHHHhhChhHHHHHHH--hhHHHHHHHHhccccCcC
Confidence            5432      2344457899999999995  47899999999999999999999888873  689999999865      


Q ss_pred             cChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhcC
Q 015939          319 VGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGKA  382 (398)
Q Consensus       319 ~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~~  382 (398)
                      .++.++..|+.+|.+++..+  ++.+..+.+.|+++.|+.++.+..++.+++.|..+|..|..+
T Consensus       389 ~~~~v~~~a~~~L~~l~~~~--~~~~~~l~~~g~i~~L~~l~~~~~~~~~~~aA~~~L~~L~~~  450 (457)
T d1xm9a1         389 NSEDILSSACYTVRNLMASQ--PQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS  450 (457)
T ss_dssp             THHHHHHHHHHHHHHHHTTC--THHHHHHCCHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTSSS
T ss_pred             CcHHHHHHHHHHHHHHhcCC--HHHHHHHHHCCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHcC
Confidence            23568899999999999754  678899999999999999998877889999999999998763

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=4.4e-22  Score=150.87  Aligned_cols=76  Identities=33%  Similarity=0.428  Sum_probs=68.8

Q ss_pred             ccccccCCCCcccccCccccCCCceecCCC-cccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHHhh
Q 015939            3 RQELYIAVPNLFRCPISLDVMKSPVSLCTG-VTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWSHQ   79 (398)
Q Consensus         3 ~~~~~~~~~~~~~Cpi~~~~~~dPv~~~~g-~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~~~   79 (398)
                      .++.+.++|++|.||||+++|+|||+++|| |||||.||.+|+.. ..+||.|++++...+++||..|+..|+.|.++
T Consensus        12 ~~~~~~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~-~~~~P~~~~~l~~~~L~pN~~Lr~~I~~~~~~   88 (98)
T d1wgma_          12 EEETYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLTMDQIRPNTELKEKIQRWLAE   88 (98)
T ss_dssp             CCCCCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCCTTTSEECHHHHHHHHHHHHH
T ss_pred             hHhhhcCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHh-cCCcccccccccchhhcchHHHHHHHHHHHHH
Confidence            345667999999999999999999999966 58999999999975 56899999999999999999999999999864

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.80  E-value=2.1e-18  Score=155.84  Aligned_cols=193  Identities=14%  Similarity=0.108  Sum_probs=163.3

Q ss_pred             HHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHH-HHhcCChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHH
Q 015939          147 IAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLE-ILREGNLDSKIGSIKILDSISLD-NESKRRVLETENLLS  224 (398)
Q Consensus       147 ~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~  224 (398)
                      .+.++.|+.+|.+++.+.+.    +.. +...|+++.++. +|++++.++|..|+.+|.+++.+ +..+..+.. .|+++
T Consensus        31 ~~~~~~Al~~L~~L~~~~d~----a~~-l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~-~~~i~  104 (264)
T d1xqra1          31 QQEREGALELLADLCENMDN----AAD-FCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLG-LGALR  104 (264)
T ss_dssp             HHHHHHHHHHHHHHHTSHHH----HHH-HHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHH
T ss_pred             HHHHHHHHHHHHHHHcCHHH----HHH-HHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-cCchH
Confidence            45568899999999965553    455 668888998875 77888999999999999999986 567777777 89999


Q ss_pred             HHHHHhccccCHHHHHHHHHHHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHH
Q 015939          225 ALFDYLKLAEDQALNDAILSILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLAL  302 (398)
Q Consensus       225 ~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i  302 (398)
                      .|+.+|.+..++.++..++.+|.+++.+. +++..+.+.|+++.|+.+|.  +.++.++..++.+|.+|+. +++.+..+
T Consensus       105 ~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~  182 (264)
T d1xqra1         105 KLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQ--QQVQKLKVKSAFLLQNLLVGHPEHKGTL  182 (264)
T ss_dssp             HHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHH--SSCHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred             HHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHh--cCchHHHHHHHHHHHHHHhccHHHHHHH
Confidence            99999987658889999999999999765 46777789999999999995  4789999999999999976 67788888


Q ss_pred             hhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhc
Q 015939          303 SEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNS  350 (398)
Q Consensus       303 ~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~  350 (398)
                      . ..|+++.|+.++.++++.+++.|+.+|++|+..+  +..+..+...
T Consensus       183 ~-~~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~--~~~~~~~~~~  227 (264)
T d1xqra1         183 C-SMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDF--PQGVRECREP  227 (264)
T ss_dssp             H-HTTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTC--HHHHHHHHCG
T ss_pred             H-HhhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--HHHHHHHHHh
Confidence            8 5799999999999999999999999999999764  4555555543

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=9.1e-18  Score=151.58  Aligned_cols=190  Identities=15%  Similarity=0.139  Sum_probs=159.4

Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHH-HhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCC
Q 015939          102 NSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFG-VLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNC  180 (398)
Q Consensus       102 ~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~-lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~  180 (398)
                      +.+..|+..|..++.+ ..++..+... |+++.|+. +|++ .  +..++..|+.+|.+++.+.+.   ++.. +.+.|+
T Consensus        32 ~~~~~Al~~L~~L~~~-~d~a~~l~~~-gg~~~ll~~ll~s-~--~~~vr~~A~~~L~~l~~~~~~---~~~~-~~~~~~  102 (264)
T d1xqra1          32 QEREGALELLADLCEN-MDNAADFCQL-SGMHLLVGRYLEA-G--AAGLRWRAAQLIGTCSQNVAA---IQEQ-VLGLGA  102 (264)
T ss_dssp             HHHHHHHHHHHHHHTS-HHHHHHHHHT-THHHHHHHTTTTC-S--SHHHHHHHHHHHHHHHTTCHH---HHHH-HHHTTH
T ss_pred             HHHHHHHHHHHHHHcC-HHHHHHHHHc-CCHHHHHHHHhCC-C--CHHHHHHHHHHHHHHHHHHHH---HHHH-HHHcCc
Confidence            3778899999999955 6677788888 99999986 4555 3  456779999999999986654   2444 678899


Q ss_pred             hHHHHHHHhcC-ChhhHHHHHHHHHHhhcC-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC-CcchHH
Q 015939          181 LPLFLEILREG-NLDSKIGSIKILDSISLD-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV-YRSVKA  257 (398)
Q Consensus       181 i~~Lv~lL~~~-~~~~~~~a~~~L~~L~~~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~-~~~~~~  257 (398)
                      ++.|+.+|.++ +++++..++++|.+++.+ +.++..+.. .|+++.|+++|++. +++++..++++|++|+. +++++.
T Consensus       103 i~~Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~-~~gi~~L~~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~  180 (264)
T d1xqra1         103 LRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLR-LDGFSVLMRAMQQQ-VQKLKVKSAFLLQNLLVGHPEHKG  180 (264)
T ss_dssp             HHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHH-TTHHHHHHHHHHSS-CHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred             hHHHHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHH-hhhhhHHHHHHhcC-chHHHHHHHHHHHHHHhccHHHHH
Confidence            99999999755 788999999999999977 556666666 89999999999998 89999999999999985 567888


Q ss_pred             HHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHHhh
Q 015939          258 QLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLALSE  304 (398)
Q Consensus       258 ~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i~~  304 (398)
                      .+++.|+++.|+.+|.  ++++.+++.|+.+|.+|+. +++.+..+..
T Consensus       181 ~~~~~~~v~~L~~lL~--~~~~~~~~~a~~aL~~L~~~~~~~~~~~~~  226 (264)
T d1xqra1         181 TLCSMGMVQQLVALVR--TEHSPFHEHVLGALCSLVTDFPQGVRECRE  226 (264)
T ss_dssp             HHHHTTHHHHHHHHHT--SCCSTHHHHHHHHHHHHHTTCHHHHHHHHC
T ss_pred             HHHHhhhHHHHHHHHc--CCCHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            8999999999999995  4789999999999999988 6666666653

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=8.4e-17  Score=153.22  Aligned_cols=243  Identities=11%  Similarity=0.129  Sum_probs=190.2

Q ss_pred             CCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhc
Q 015939          129 GGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISL  208 (398)
Q Consensus       129 ~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~  208 (398)
                      ++.||.|+.+|++ +++  .++..|+++|.+++.+++.   +|.. +.+.|+||.|+++|+++++++|..|+++|.+|+.
T Consensus         1 ~~~ip~lv~~L~~-~~~--~~~~~a~~~l~~l~~~~~~---~~~~-i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~   73 (457)
T d1xm9a1           1 GLTIPKAVQYLSS-QDE--KYQAIGAYYIQHTCFQDES---AKQQ-VYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVF   73 (457)
T ss_dssp             CCCHHHHHHHHHS-SCT--HHHHHHHHHHHHHTSSCSS---HHHH-HHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHS
T ss_pred             CCCHHHHHHHhCC-CCH--HHHHHHHHHHHHHHcCCHH---HHHH-HHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHc
Confidence            4689999999998 554  5669999999999986654   3666 7899999999999999999999999999999996


Q ss_pred             C-chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhc--------------
Q 015939          209 D-NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILS--------------  273 (398)
Q Consensus       209 ~-~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~--------------  273 (398)
                      + ++++..+.+ .|+++.|+.++.+..+++++..++++|++++.....+......|. +.++..+.              
T Consensus        74 ~~~~~~~~i~~-~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~  151 (457)
T d1xm9a1          74 RSTTNKLETRR-QNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADAL-PVLADRVIIPFSGWCDGNSNMS  151 (457)
T ss_dssp             SCHHHHHHHHH-TTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHH-HHHHHHTTHHHHTCC-------
T ss_pred             CCHHHHHHHHH-CCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhccc-HHHHHHHHhhhhhhhcchhhhh
Confidence            5 778888888 899999999998766888999999999999998887777766544 44444331              


Q ss_pred             ccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhc-----------------------------------
Q 015939          274 DSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMK-----------------------------------  318 (398)
Q Consensus       274 ~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~-----------------------------------  318 (398)
                      ....+..+++.++.+|..++.+++++..+....|+++.++.++..                                   
T Consensus       152 ~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  231 (457)
T d1xm9a1         152 REVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYR  231 (457)
T ss_dssp             --CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHH
T ss_pred             cccccHHHHHHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHH
Confidence            023467889999999999999999988887667888887776532                                   


Q ss_pred             ----------------------------------------------------------------cChhHHHHHHHHHHHh
Q 015939          319 ----------------------------------------------------------------VGKTAREDAVVVIWSM  334 (398)
Q Consensus       319 ----------------------------------------------------------------~~~~~~~~a~~~L~~l  334 (398)
                                                                                      .++..++.+..++.++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l  311 (457)
T d1xm9a1         232 QLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNL  311 (457)
T ss_dssp             HHHHTC----------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhhhhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence                                                                            1223344555556665


Q ss_pred             hccCCC---hhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          335 CCVYKD---ARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       335 ~~~~~~---~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      +.....   ...+..+.+.|+++.|+.+++++ ++.++..|..+|..|+.
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~l~~L~~~l~~~-~~~v~~~a~~~l~~La~  360 (457)
T d1xm9a1         312 TASKGLMSSGMSQLIGLKEKGLPQIARLLQSG-NSDVVRSGASLLSNMSR  360 (457)
T ss_dssp             TTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCS-CHHHHHHHHHHHHHHHT
T ss_pred             hhccccchHHHHHHHHHHcCChHHHHhhhcCc-cHHHHHHHHHHHHHHhh
Confidence            543221   11344556789999999999877 78999999999999987

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.67  E-value=2e-17  Score=120.75  Aligned_cols=67  Identities=18%  Similarity=0.301  Sum_probs=55.5

Q ss_pred             cccCCCCc----ccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCc-ccHHHHHH
Q 015939            6 LYIAVPNL----FRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFV-PNLTLHRL   72 (398)
Q Consensus         6 ~~~~~~~~----~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~-~n~~l~~~   72 (398)
                      ...++|++    +.||||.++|+|||+++|||+||+.||++|++.+.+.||.||.++...++. |..++...
T Consensus        12 l~~d~~~d~~~~l~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l~~P~~~~l~~   83 (86)
T d1rmda2          12 LAVDFPAHFVKSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNI   83 (86)
T ss_dssp             BSSCCCHHHHHHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHH
T ss_pred             ccccchhhhccCcCCccCCcchhcceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhccCHHHHHHHH
Confidence            33455655    489999999999999999999999999999987677899999999887764 56655544

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=5.5e-17  Score=124.20  Aligned_cols=69  Identities=20%  Similarity=0.459  Sum_probs=59.4

Q ss_pred             CCCCcccccCccccCCCceecCCCcccchhHHHHHHhc--CCCCCCcccccCCCCCCcccHHHHHHHHHHH
Q 015939            9 AVPNLFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLES--GHDTCPATMQILSTKEFVPNLTLHRLIAHWS   77 (398)
Q Consensus         9 ~~~~~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~--~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~   77 (398)
                      .+.+.+.||||.++|.|||+++|||+||+.||.+|+..  +...||.|+.++...++.+|..+..+++.+.
T Consensus        17 ~l~~~l~CpIC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~l~~n~~l~~~ve~l~   87 (103)
T d1jm7a_          17 AMQKILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQLVEELL   87 (103)
T ss_dssp             HHHHHTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCCSSSHHHHHHH
T ss_pred             hcccCcCCCccCchhCCeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhhCCcCHHHHHHHHHHH
Confidence            34567899999999999999999999999999999964  2357999999999999999987777776663

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.62  E-value=4.3e-17  Score=109.66  Aligned_cols=52  Identities=25%  Similarity=0.381  Sum_probs=46.6

Q ss_pred             ccccCccccCCCceecC-CCcccchhHHHHHHhcCCCCCCcccccCCCCCCccc
Q 015939           14 FRCPISLDVMKSPVSLC-TGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPN   66 (398)
Q Consensus        14 ~~Cpi~~~~~~dPv~~~-~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n   66 (398)
                      +.||||+++|+|||+++ |||+||++||.+|+.+ +.+||.||++++..+++|.
T Consensus         1 l~C~Ic~~~~~~Pv~~~~cGh~fc~~cI~~~l~~-~~~CP~c~~~l~~~dLipi   53 (56)
T d2baya1           1 MLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLSIEEIVEI   53 (56)
T ss_dssp             CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCCGGGCEEC
T ss_pred             CCCccCCchHHhcCccCCCCCcccHHHHHHHHhh-ccCCCccCCcCCHHhceeC
Confidence            47999999999999885 9999999999999986 5579999999998887664

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=2e-16  Score=119.66  Aligned_cols=67  Identities=18%  Similarity=0.345  Sum_probs=59.8

Q ss_pred             cCCCCcccccCccccCCCceec-CCCcccchhHHHHHHhcCCCCCCcccccCCCCCCcccHHHHHHHHHHH
Q 015939            8 IAVPNLFRCPISLDVMKSPVSL-CTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFVPNLTLHRLIAHWS   77 (398)
Q Consensus         8 ~~~~~~~~Cpi~~~~~~dPv~~-~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~~n~~l~~~i~~~~   77 (398)
                      ..+++++.||||.++|.|||++ +|||+||+.||.+|+..   .||.|+.++...++.+|..+..+++.+.
T Consensus        17 ~~l~~~l~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~~---~CP~Cr~~~~~~~l~~n~~l~~lv~~~~   84 (97)
T d1jm7b_          17 DRLEKLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIGT---GCPVCYTPAWIQDLKINRQLDSMIQLCS   84 (97)
T ss_dssp             HHHHHTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTTT---BCSSSCCBCSCSSCCCCHHHHHHHHHHH
T ss_pred             HhhhhcCCCccCCchhhcCceeCCCCCchhHHHHHHHHhc---cccccCCcCchhhCcccHHHHHHHHHHH
Confidence            4566788999999999999986 79999999999999853   5999999999999999999999988774

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.1e-14  Score=103.49  Aligned_cols=54  Identities=20%  Similarity=0.210  Sum_probs=46.9

Q ss_pred             CCCCc-ccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCC
Q 015939            9 AVPNL-FRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKE   62 (398)
Q Consensus         9 ~~~~~-~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~   62 (398)
                      ++..+ ..||||.+.++|||+++|||+||+.||.+|+..+...||.||..+...+
T Consensus        18 ~~~~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~   72 (79)
T d1fbva4          18 EMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE   72 (79)
T ss_dssp             TTSCCTTBCTTTSSSBCCEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCC
T ss_pred             hcCCCCCCCccCCCcCCCeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCc
Confidence            34434 4699999999999999999999999999999876778999999998654

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=9.3e-14  Score=92.53  Aligned_cols=48  Identities=17%  Similarity=0.121  Sum_probs=41.6

Q ss_pred             cccccCccccCCCceecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCCc
Q 015939           13 LFRCPISLDVMKSPVSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEFV   64 (398)
Q Consensus        13 ~~~Cpi~~~~~~dPv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l~   64 (398)
                      .+.||||.+.|+||++++|||+||+.||++|    ...||.||+++....-.
T Consensus         6 ~l~C~IC~~~~~~p~~lpCgH~fC~~Ci~~~----~~~CP~Cr~~~~~~~~~   53 (56)
T d1bora_           6 FLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS----GMQCPICQAPWPLGADT   53 (56)
T ss_dssp             CSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS----SSSCSSCCSSSSCCSSC
T ss_pred             CCCCcccCcccCCCEEecCCCHHhHHHHHcC----CCcCcCCCCcccCCCCC
Confidence            4689999999999999999999999999765    55799999998765433

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=5.4e-13  Score=92.22  Aligned_cols=52  Identities=21%  Similarity=0.316  Sum_probs=43.2

Q ss_pred             CcccccCccccCCC-c----eecCCCcccchhHHHHHHhcCCCCCCcccccCCCCCC
Q 015939           12 NLFRCPISLDVMKS-P----VSLCTGVTYDRSSIQHWLESGHDTCPATMQILSTKEF   63 (398)
Q Consensus        12 ~~~~Cpi~~~~~~d-P----v~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~~~l   63 (398)
                      ++..||||.+.+.. |    ++++|||+||+.||.+|+..+...||.||+++...++
T Consensus         2 dd~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~~~   58 (65)
T d1g25a_           2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKSNF   58 (65)
T ss_dssp             CTTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSCCC
T ss_pred             CCCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcccccc
Confidence            46789999986533 2    6678999999999999997767789999999987664

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.21  E-value=3e-12  Score=89.30  Aligned_cols=43  Identities=23%  Similarity=0.412  Sum_probs=39.0

Q ss_pred             ccCccccCCCcee-cCCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939           16 CPISLDVMKSPVS-LCTGVTYDRSSIQHWLESGHDTCPATMQILS   59 (398)
Q Consensus        16 Cpi~~~~~~dPv~-~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~   59 (398)
                      ||||.+.|.+|++ ++|||+||..||.+|+.. +.+||.||.++.
T Consensus         8 C~IC~~~~~~~~~~~~C~H~Fc~~Ci~~w~~~-~~~CP~CR~~i~   51 (68)
T d1chca_           8 CPICLEDPSNYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVE   51 (68)
T ss_dssp             CSSCCSCCCSCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCC
T ss_pred             CccCCcCccCCcEEeCCCCcCcHHHHHHHHHh-CCcCCCCCcchH
Confidence            9999999998866 789999999999999986 678999999875

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2.2e-11  Score=79.77  Aligned_cols=46  Identities=15%  Similarity=0.293  Sum_probs=39.0

Q ss_pred             cccCccccCCC----ceecCCCcccchhHHHHHHhcCCCCCCcccccCCC
Q 015939           15 RCPISLDVMKS----PVSLCTGVTYDRSSIQHWLESGHDTCPATMQILST   60 (398)
Q Consensus        15 ~Cpi~~~~~~d----Pv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~~   60 (398)
                      -||||.+-|.+    +++++|||+|++.||.+|+..+...||.||+++.+
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCC
Confidence            49999998854    34568999999999999998666789999998865

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.04  E-value=6.4e-11  Score=78.35  Aligned_cols=48  Identities=23%  Similarity=0.492  Sum_probs=40.2

Q ss_pred             CCCcccccCccccCCCc---eec-CCCcccchhHHHHHHhcCCCCCCcccccC
Q 015939           10 VPNLFRCPISLDVMKSP---VSL-CTGVTYDRSSIQHWLESGHDTCPATMQIL   58 (398)
Q Consensus        10 ~~~~~~Cpi~~~~~~dP---v~~-~~g~~~~r~~i~~~~~~~~~~CP~~~~~l   58 (398)
                      +.++..||||.+.|.+.   +++ +|||.|+..||.+|+.. +.+||.||.++
T Consensus         2 ~ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~-~~~CP~CR~~i   53 (55)
T d1iyma_           2 MDDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTV   53 (55)
T ss_dssp             CCCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCS
T ss_pred             CCCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHh-CCcCCCCCCEe
Confidence            46677899999999763   445 59999999999999975 67899999765

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.76  E-value=3e-09  Score=81.99  Aligned_cols=53  Identities=15%  Similarity=0.197  Sum_probs=42.2

Q ss_pred             CCCCcccccCccccCCCc------------------eecCCCcccchhHHHHHHhc----CCCCCCcccccCCCC
Q 015939            9 AVPNLFRCPISLDVMKSP------------------VSLCTGVTYDRSSIQHWLES----GHDTCPATMQILSTK   61 (398)
Q Consensus         9 ~~~~~~~Cpi~~~~~~dP------------------v~~~~g~~~~r~~i~~~~~~----~~~~CP~~~~~l~~~   61 (398)
                      ..+.+..||||.+.|.+|                  .+++|||.|+..||.+|+..    ++.+||.||..+...
T Consensus        21 ~~~~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T d1v87a_          21 KVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             SSCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             cccccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhccC
Confidence            445567899999998765                  45789999999999999964    345799999887543

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.63  E-value=1.2e-08  Score=68.64  Aligned_cols=49  Identities=18%  Similarity=0.311  Sum_probs=42.1

Q ss_pred             CCcccccCccccCCCceecCCC-----cccchhHHHHHHh-cCCCCCCcccccCC
Q 015939           11 PNLFRCPISLDVMKSPVSLCTG-----VTYDRSSIQHWLE-SGHDTCPATMQILS   59 (398)
Q Consensus        11 ~~~~~Cpi~~~~~~dPv~~~~g-----~~~~r~~i~~~~~-~~~~~CP~~~~~l~   59 (398)
                      ++...|+||.+.+.+|.+.+|+     |.|.+.||.+|+. .+..+||.||.++.
T Consensus         4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCccCCccCCCceeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeee
Confidence            3556799999999999988864     9999999999995 46778999998865

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.55  E-value=1.9e-08  Score=73.29  Aligned_cols=44  Identities=16%  Similarity=0.367  Sum_probs=37.2

Q ss_pred             cccCccccCCC------------------ceecCCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939           15 RCPISLDVMKS------------------PVSLCTGVTYDRSSIQHWLESGHDTCPATMQILS   59 (398)
Q Consensus        15 ~Cpi~~~~~~d------------------Pv~~~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~   59 (398)
                      .|+||++.|.+                  +++++|||.|...||.+|+.. +.+||.||.++.
T Consensus        23 ~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~   84 (88)
T d3dplr1          23 NCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREWE   84 (88)
T ss_dssp             CCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBCC
T ss_pred             cCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHH-CCcCCCCCCccc
Confidence            38999888876                  345689999999999999986 678999998865

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=5.3e-06  Score=81.12  Aligned_cols=221  Identities=14%  Similarity=0.059  Sum_probs=153.2

Q ss_pred             cHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCc
Q 015939          131 FVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDN  210 (398)
Q Consensus       131 ~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~  210 (398)
                      .++.+..++..   .+..+++.|+.+|..+....+.     .. + ..-.+|.+..+.++.....|..|+.++..+...-
T Consensus        88 ll~~l~~l~~~---~~~~Vr~~a~~~l~~i~~~~~~-----~~-~-~~~l~p~i~~L~~~~~~~~r~~a~~ll~~~~~~~  157 (588)
T d1b3ua_          88 LLPPLESLATV---EETVVRDKAVESLRAISHEHSP-----SD-L-EAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRV  157 (588)
T ss_dssp             GHHHHHHHTTS---SCHHHHHHHHHHHHHHHTTSCH-----HH-H-HHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTTS
T ss_pred             HHHHHHHHccC---CCHHHHHHHHHHHHHHHHhCCH-----HH-H-HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHh
Confidence            45555555554   3455779999999888765432     11 1 2234666666666666777888888888776542


Q ss_pred             hhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHH
Q 015939          211 ESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLS  290 (398)
Q Consensus       211 ~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~  290 (398)
                      ...  ..  ...++.+..++++. ++.+++.++.++..++..-...  ......++.+..++.  ++++.++..|+.+|.
T Consensus       158 ~~~--~~--~~l~~~~~~l~~D~-~~~VR~~a~~~l~~~~~~~~~~--~~~~~l~~~l~~l~~--d~~~~vr~~a~~~l~  228 (588)
T d1b3ua_         158 SSA--VK--AELRQYFRNLCSDD-TPMVRRAAASKLGEFAKVLELD--NVKSEIIPMFSNLAS--DEQDSVRLLAVEACV  228 (588)
T ss_dssp             CHH--HH--HHHHHHHHHHHTCS-CHHHHHHHHHHHHHHHHTSCHH--HHHHTHHHHHHHHHT--CSCHHHHTTHHHHHH
T ss_pred             hHH--HH--HHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHhcHH--HHHHHHHHHHHHHhc--CCchhhHHHHHHHHH
Confidence            221  11  34677788888888 8999999999999997643321  223446777888884  478889999999999


Q ss_pred             HHhC--CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHH
Q 015939          291 IVAT--CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIV  368 (398)
Q Consensus       291 ~La~--~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~  368 (398)
                      .++.  .++....     -.++.+..++.+.+..++..++.+|..++...+     ........++.+..+++.. +..+
T Consensus       229 ~i~~~~~~~~~~~-----~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~-----~~~~~~~l~~~l~~ll~d~-~~~v  297 (588)
T d1b3ua_         229 NIAQLLPQEDLEA-----LVMPTLRQAAEDKSWRVRYMVADKFTELQKAVG-----PEITKTDLVPAFQNLMKDC-EAEV  297 (588)
T ss_dssp             HHHHHSCHHHHHH-----HTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHC-----HHHHHHTHHHHHHHHHTCS-SHHH
T ss_pred             HhhccCCHHHHHH-----HHHHHHHHhcccccHHHHHHHHHhHHHHHHHhh-----hhhhhhhhhHHHHHHHhcc-chHH
Confidence            8875  2332222     356788888888899999999999999885422     1233345778888888765 7899


Q ss_pred             HHHHHHHHHHHhc
Q 015939          369 RKMCGDLVKVLGK  381 (398)
Q Consensus       369 k~~A~~lL~~l~~  381 (398)
                      |..|...+..+.+
T Consensus       298 r~~a~~~l~~~~~  310 (588)
T d1b3ua_         298 RAAASHKVKEFCE  310 (588)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            9999888887766

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.41  E-value=3.4e-05  Score=67.14  Aligned_cols=231  Identities=9%  Similarity=0.007  Sum_probs=142.5

Q ss_pred             HHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccch
Q 015939           87 VRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGV  166 (398)
Q Consensus        87 i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~  166 (398)
                      ...|++.|.+++..  .+..|+..|..+..           . .+++.|+.++++ .  +..++..|+.+|..+......
T Consensus        21 ~~~L~~~L~d~~~~--vR~~A~~~L~~~~~-----------~-~~~~~l~~~l~d-~--~~~vr~~a~~aL~~l~~~~~~   83 (276)
T d1oyza_          21 DDELFRLLDDHNSL--KRISSARVLQLRGG-----------Q-DAVRLAIEFCSD-K--NYIRRDIGAFILGQIKICKKC   83 (276)
T ss_dssp             HHHHHHHTTCSSHH--HHHHHHHHHHHHCC-----------H-HHHHHHHHHHTC-S--SHHHHHHHHHHHHHSCCCTTT
T ss_pred             HHHHHHHhcCCCHH--HHHHHHHHHHhhCC-----------H-hHHHHHHHHHcC-C--CHHHHHHHHHHHHHhcccccc
Confidence            34577777766654  88888888876642           1 568899999987 4  455678999999887643332


Q ss_pred             HHHhhHhhhccCCChHHHHH-HHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHH
Q 015939          167 KEKLNRLILNTYNCLPLFLE-ILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSI  245 (398)
Q Consensus       167 ~~~~~~~il~~~g~i~~Lv~-lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~a  245 (398)
                      .    .      ..++.+.. ++++.++.++..++.+|..+......    .. ...++.+...+.+. ++.++..++.+
T Consensus        84 ~----~------~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~-~~~~~~l~~~~~d~-~~~vr~~a~~~  147 (276)
T d1oyza_          84 E----D------NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YS-PKIVEQSQITAFDK-STNVRRATAFA  147 (276)
T ss_dssp             H----H------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GH-HHHHHHHHHHTTCS-CHHHHHHHHHH
T ss_pred             c----c------chHHHHHHHHhcCCChhHHHHHHHHHHHHccccch----hh-HHHHHHHHHHhcCc-chHHHHHHHHH
Confidence            1    1      12333443 45667999999999999988754321    11 35677788888877 78888888777


Q ss_pred             HHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCH----------------HHHHHH------h
Q 015939          246 LITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCS----------------EGRLAL------S  303 (398)
Q Consensus       246 L~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~----------------~~~~~i------~  303 (398)
                      +....          +...++.++.++.  ..+..+...+..++..+....                ..+...      .
T Consensus       148 l~~~~----------~~~~~~~l~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~  215 (276)
T d1oyza_         148 ISVIN----------DKATIPLLINLLK--DPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYR  215 (276)
T ss_dssp             HHTC-------------CCHHHHHHHHT--CSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHT
T ss_pred             Hhhcc----------hHHHHHHHHHhcc--cccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchh
Confidence            76542          1234444555552  233333333333333332211                011100      1


Q ss_pred             hccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHH
Q 015939          304 EEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVK  377 (398)
Q Consensus       304 ~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~  377 (398)
                      ....+++.|+..+.  ++.++..++.+|..+..             .++++.|..++..+.+..+|..|...|+
T Consensus       216 ~~~~~~~~L~~~l~--d~~vr~~a~~aL~~ig~-------------~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         216 KDKRVLSVLCDELK--KNTVYDDIIEAAGELGD-------------KTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             TCGGGHHHHHHHHT--SSSCCHHHHHHHHHHCC-------------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             hhhhhHHHHHHHhC--ChHHHHHHHHHHHHcCC-------------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence            13357788888776  34577788888876642             3477888888877667889988866553

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.39  E-value=8.4e-06  Score=79.65  Aligned_cols=250  Identities=8%  Similarity=0.028  Sum_probs=162.8

Q ss_pred             hhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCCh
Q 015939          102 NSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCL  181 (398)
Q Consensus       102 ~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i  181 (398)
                      ..+..|+..+..++..-+.  ..+. . -.+|.+..+.++  + ....+..|...+..+......  ..+.      ..+
T Consensus       102 ~Vr~~a~~~l~~i~~~~~~--~~~~-~-~l~p~i~~L~~~--~-~~~~r~~a~~ll~~~~~~~~~--~~~~------~l~  166 (588)
T d1b3ua_         102 VVRDKAVESLRAISHEHSP--SDLE-A-HFVPLVKRLAGG--D-WFTSRTSACGLFSVCYPRVSS--AVKA------ELR  166 (588)
T ss_dssp             HHHHHHHHHHHHHHTTSCH--HHHH-H-THHHHHHHHHTC--S-SHHHHHHHGGGHHHHTTTSCH--HHHH------HHH
T ss_pred             HHHHHHHHHHHHHHHhCCH--HHHH-H-HHHHHHHHHhcc--c-chHHHHHHHHHHHHHHHHhhH--HHHH------HHH
Confidence            3677888888888754221  1222 2 345555555554  2 223346666666666544332  1222      247


Q ss_pred             HHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHH
Q 015939          182 PLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVE  261 (398)
Q Consensus       182 ~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~  261 (398)
                      +.+..++.+.++.+|..++..+..++..-.....  . ...++.+..++++. +..++..++.++..++..-+..  ...
T Consensus       167 ~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~~--~-~~l~~~l~~l~~d~-~~~vr~~a~~~l~~i~~~~~~~--~~~  240 (588)
T d1b3ua_         167 QYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNV--K-SEIIPMFSNLASDE-QDSVRLLAVEACVNIAQLLPQE--DLE  240 (588)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHHH--H-HTHHHHHHHHHTCS-CHHHHTTHHHHHHHHHHHSCHH--HHH
T ss_pred             HHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHHH--H-HHHHHHHHHHhcCC-chhhHHHHHHHHHHhhccCCHH--HHH
Confidence            8888889989999999999999999876332221  2 45677888888887 8889999999999886432211  112


Q ss_pred             cCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCCh
Q 015939          262 LGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDA  341 (398)
Q Consensus       262 ~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~  341 (398)
                      .-.++.+..++.  +.+..++..++.+|..++..-. . .+. ....++.+..++.+.++.++..|+..|..++..-+ .
T Consensus       241 ~~i~~~l~~~~~--D~~~~Vr~~~~~~l~~l~~~~~-~-~~~-~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~-~  314 (588)
T d1b3ua_         241 ALVMPTLRQAAE--DKSWRVRYMVADKFTELQKAVG-P-EIT-KTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLS-A  314 (588)
T ss_dssp             HHTHHHHHHHHT--CSSHHHHHHHHHTHHHHHHHHC-H-HHH-HHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSC-T
T ss_pred             HHHHHHHHHhcc--cccHHHHHHHHHhHHHHHHHhh-h-hhh-hhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHh-h
Confidence            236788888884  4678899999999998875211 1 122 23578899999999999999999999998886532 2


Q ss_pred             hHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHH
Q 015939          342 RVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVL  379 (398)
Q Consensus       342 ~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l  379 (398)
                      .......-...++.+...+... +..+|..++..+..+
T Consensus       315 ~~~~~~~~~~i~~~l~~~~~d~-~~~vr~~~~~~l~~~  351 (588)
T d1b3ua_         315 DCRENVIMSQILPCIKELVSDA-NQHVKSALASVIMGL  351 (588)
T ss_dssp             TTHHHHHHHTHHHHHHHHHTCS-CHHHHHHHHTTGGGG
T ss_pred             hhhhhhhHHHHHHHHHHhhcCC-ChHHHHHHHHHHhhh
Confidence            2222333344666666666544 677777765554443

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=0.00012  Score=67.96  Aligned_cols=283  Identities=12%  Similarity=0.068  Sum_probs=169.8

Q ss_pred             HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939           85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN  164 (398)
Q Consensus        85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~  164 (398)
                      +-++.++..+.+.......+..++..+..++.........-... ..++.++..+.+ .+.+.+++..++.++..+....
T Consensus       127 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~-~il~~~~~~l~~-~~~~~~v~~~a~~~l~~~~~~~  204 (458)
T d1ibrb_         127 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKSN-EILTAIIQGMRK-EEPSNNVKLAATNALLNSLEFT  204 (458)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGHH-HHHHHHHHHHST-TCCCHHHHHHHHHHHHHHTTTT
T ss_pred             chhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhccchhhhhhHH-HHHHHHHHHhcc-cccCHHHHHHHHHHHHHHHHhh
Confidence            45777888887765543345566777777664422221111111 457777888876 5556677889999988877543


Q ss_pred             chHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-ch-hHHHhhchhhHHHHHHHHhccccCHHHHHHH
Q 015939          165 GVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NE-SKRRVLETENLLSALFDYLKLAEDQALNDAI  242 (398)
Q Consensus       165 ~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~-~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a  242 (398)
                      .....  .. .......+.+..++...+++++..++.+|..+... .+ ....+ . ....+.+...+.+. +.+.+..+
T Consensus       205 ~~~~~--~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l-~-~~~~~~~~~~~~~~-~~~~~~~a  278 (458)
T d1ibrb_         205 KANFD--KE-SERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-G-PALFAITIEAMKSD-IDEVALQG  278 (458)
T ss_dssp             HHHHT--SH-HHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-T-TTHHHHHHHHHHCS-SHHHHHHH
T ss_pred             hhhhh--hH-HHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHH-H-HHHHHHHHHHhccc-cHHHHHHH
Confidence            32100  00 11223566777777888999999999999988765 22 22222 1 22334445555565 77888888


Q ss_pred             HHHHHHhcCCcch---------------------HHHHHHcCChHHHHHHhccc-----CcchhhHHHHHHHHHHHhCCH
Q 015939          243 LSILITLSVYRSV---------------------KAQLVELGMVQILTRILSDS-----RTQILTVEKSIKMLSIVATCS  296 (398)
Q Consensus       243 ~~aL~~Ls~~~~~---------------------~~~~v~~g~v~~Lv~lL~~~-----~~~~~~~~~al~~L~~La~~~  296 (398)
                      +..+..++.....                     .........++.+.+.+...     +.+..+...+..++..++...
T Consensus       279 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~  358 (458)
T d1ibrb_         279 IEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC  358 (458)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhc
Confidence            8888877532110                     01111122345555555311     123346777777777776511


Q ss_pred             HHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHH
Q 015939          297 EGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLV  376 (398)
Q Consensus       297 ~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL  376 (398)
                      .  ..+.  ...++.+...+.+.+...++.|+.+|..++..........  .-...++.++..++.. ++.+|..|...|
T Consensus       359 ~--~~~~--~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~--~l~~i~~~l~~~l~d~-~~~VR~~a~~~l  431 (458)
T d1ibrb_         359 E--DDIV--PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP--LVIQAMPTLIELMKDP-SVVVRDTAAWTV  431 (458)
T ss_dssp             T--TTHH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT--TTTTHHHHHHHGGGCS-CHHHHHHHHHHH
T ss_pred             c--Hhhh--hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHH--HHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            1  1122  1245566666677888999999999999885321111111  1134678888888765 899999999999


Q ss_pred             HHHhcC
Q 015939          377 KVLGKA  382 (398)
Q Consensus       377 ~~l~~~  382 (398)
                      ..+.++
T Consensus       432 ~~i~~~  437 (458)
T d1ibrb_         432 GRICEL  437 (458)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            988873

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.05  E-value=0.00013  Score=63.22  Aligned_cols=208  Identities=13%  Similarity=0.059  Sum_probs=127.4

Q ss_pred             CcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC
Q 015939          130 GFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD  209 (398)
Q Consensus       130 g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~  209 (398)
                      ...+.|+.+|++ .  ++.++..|+.+|..+.               ....++.|+.+|++.++.+|..|+.+|..+...
T Consensus        19 ~~~~~L~~~L~d-~--~~~vR~~A~~~L~~~~---------------~~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~   80 (276)
T d1oyza_          19 LNDDELFRLLDD-H--NSLKRISSARVLQLRG---------------GQDAVRLAIEFCSDKNYIRRDIGAFILGQIKIC   80 (276)
T ss_dssp             SCHHHHHHHTTC-S--SHHHHHHHHHHHHHHC---------------CHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC
T ss_pred             CCHHHHHHHhcC-C--CHHHHHHHHHHHHhhC---------------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHhccc
Confidence            446678888887 4  4567799999887553               123479999999999999999999999988655


Q ss_pred             chhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHH
Q 015939          210 NESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKML  289 (398)
Q Consensus       210 ~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L  289 (398)
                      .....      ..++.|...+-+..++.++..++.+|.++........    ...++.+...+.  +.++.+...++.++
T Consensus        81 ~~~~~------~~~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~~~----~~~~~~l~~~~~--d~~~~vr~~a~~~l  148 (276)
T d1oyza_          81 KKCED------NVFNILNNMALNDKSACVRATAIESTAQRCKKNPIYS----PKIVEQSQITAF--DKSTNVRRATAFAI  148 (276)
T ss_dssp             TTTHH------HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGGGH----HHHHHHHHHHTT--CSCHHHHHHHHHHH
T ss_pred             ccccc------chHHHHHHHHhcCCChhHHHHHHHHHHHHccccchhh----HHHHHHHHHHhc--CcchHHHHHHHHHH
Confidence            33322      2344555544443489999999999999875443221    125667777774  45677777776666


Q ss_pred             HHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccC-------------CChhHHHHH-------Hh
Q 015939          290 SIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVY-------------KDARVKEAV-------VN  349 (398)
Q Consensus       290 ~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~-------------~~~~~~~~~-------~~  349 (398)
                      ..+.           +...++.+..++...+...+..+..++..+....             .+...+...       ..
T Consensus       149 ~~~~-----------~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~  217 (276)
T d1oyza_         149 SVIN-----------DKATIPLLINLLKDPNGDVRNWAAFAININKYDNSDIRDCFVEMLQDKNEEVRIEAIIGLSYRKD  217 (276)
T ss_dssp             HTC--------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTC
T ss_pred             hhcc-----------hHHHHHHHHHhcccccchhhhhHHHHHHhhhccccccchhhhhhhhhhhhhhhhhhccccchhhh
Confidence            5432           1234455555555444444444444443322211             001111111       11


Q ss_pred             cCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          350 SNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       350 ~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      ..+++.|+..++.   +.+|..|...|..+++
T Consensus       218 ~~~~~~L~~~l~d---~~vr~~a~~aL~~ig~  246 (276)
T d1oyza_         218 KRVLSVLCDELKK---NTVYDDIIEAAGELGD  246 (276)
T ss_dssp             GGGHHHHHHHHTS---SSCCHHHHHHHHHHCC
T ss_pred             hhhHHHHHHHhCC---hHHHHHHHHHHHHcCC
Confidence            3467888887763   3577788888877765

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.89  E-value=2.1e-06  Score=62.98  Aligned_cols=44  Identities=14%  Similarity=0.268  Sum_probs=33.5

Q ss_pred             ccccCccccCC--C-ceecCCCcccchhHHHHHHh----cCC---CCCCccccc
Q 015939           14 FRCPISLDVMK--S-PVSLCTGVTYDRSSIQHWLE----SGH---DTCPATMQI   57 (398)
Q Consensus        14 ~~Cpi~~~~~~--d-Pv~~~~g~~~~r~~i~~~~~----~~~---~~CP~~~~~   57 (398)
                      -.||||.+.+.  + |++++|||.||+.||.+|+.    +|.   -.||.|+.+
T Consensus         6 ~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~   59 (94)
T d1wima_           6 SGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACP   59 (94)
T ss_dssp             CCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCS
T ss_pred             CcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCCC
Confidence            45999999875  3 55668999999999999985    233   259987643

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=2.1e-05  Score=83.33  Aligned_cols=269  Identities=10%  Similarity=0.061  Sum_probs=171.1

Q ss_pred             HHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc
Q 015939           86 EVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG  165 (398)
Q Consensus        86 ~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~  165 (398)
                      .+..+++.+.+.+.+  .|..|+..|......+......-... .+++.|+.+|++   .+.+++..|+.+|..+...-.
T Consensus         4 ~~~~ll~k~~~~D~d--~R~ma~~dl~~~l~~~~~~~~~~~~~-~i~~~ll~~L~D---~~~~Vq~~A~k~l~~l~~~~~   77 (1207)
T d1u6gc_           4 HISNLLEKMTSSDKD--FRFMATNDLMTELQKDSIKLDDDSER-KVVKMILKLLED---KNGEVQNLAVKCLGPLVSKVK   77 (1207)
T ss_dssp             HHHHHHHHTTCSSHH--HHHHHHHHHHHHTSSSCCSCCTTHHH-HHHHHHHHHTTC---SSHHHHHHHHHHHHHHHTTSC
T ss_pred             hHHHHHHhcCCCCHh--HHHHHHHHHHHHHhhcccccChHHHH-HHHHHHHHHhCC---CCHHHHHHHHHHHHHHHHhCc
Confidence            467788888887765  88899988887654322111111112 467888888876   345677999999998876544


Q ss_pred             hHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-ch------hHHHhhchhhHHHHHHHHhccccCHHH
Q 015939          166 VKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NE------SKRRVLETENLLSALFDYLKLAEDQAL  238 (398)
Q Consensus       166 ~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~------~~~~i~~~~g~i~~Lv~lL~~~~~~~~  238 (398)
                      +.     .   -...++.|+..+.+++...+..+..+|..+... +.      ....+.  ...++.|...+.+..++..
T Consensus        78 ~~-----~---~~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~--~~l~~~l~~~~~~~~~~~v  147 (1207)
T d1u6gc_          78 EY-----Q---VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVC--KKITGRLTSAIAKQEDVSV  147 (1207)
T ss_dssp             HH-----H---HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHH--HHHHHHHHHHHSCCSCHHH
T ss_pred             Hh-----h---HHHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHH--HHHHHHHHHhhcCCCCHHH
Confidence            31     1   124578888888888888888888888766432 11      111111  2345555555555557888


Q ss_pred             HHHHHHHHHHhcCCcc-hHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHh
Q 015939          239 NDAILSILITLSVYRS-VKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVM  317 (398)
Q Consensus       239 ~~~a~~aL~~Ls~~~~-~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~  317 (398)
                      +..++.+|..+..... .-... ....++.++..+.  +++..++..|+.+|..|+..-.  ....  ...++.++..+.
T Consensus       148 ~~~al~~l~~l~~~~g~~l~~~-~~~il~~l~~~l~--~~~~~vR~~A~~~l~~l~~~~~--~~~~--~~~~~~ll~~l~  220 (1207)
T d1u6gc_         148 QLEALDIMADMLSRQGGLLVNF-HPSILTCLLPQLT--SPRLAVRKRTIIALGHLVMSCG--NIVF--VDLIEHLLSELS  220 (1207)
T ss_dssp             HHHHHHHHHHHHHHTCSSCTTT-HHHHHHHHGGGGG--CSSHHHHHHHHHHHHHHTTTC------C--TTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHhhHHH-HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHHCC--HHHH--HHHHHHHHHHHc
Confidence            8999999988853221 10000 1125566777774  4678899999999999986321  1122  245777777665


Q ss_pred             c-cChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          318 K-VGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       318 ~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      . .+...+..++.++..++...+. .....  -..+++.++..++.. ++.+|+.+..++..+..
T Consensus       221 ~~~~~~~~~~~~~~l~~l~~~~~~-~~~~~--l~~i~~~l~~~l~~~-~~~~r~~al~~l~~l~~  281 (1207)
T d1u6gc_         221 KNDSMSTTRTYIQCIAAISRQAGH-RIGEY--LEKIIPLVVKFCNVD-DDELREYCIQAFESFVR  281 (1207)
T ss_dssp             HTCSSCSCTTHHHHHHHHHHHSSG-GGTTS--CTTHHHHHHHHHSSC-CTTTHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHHHHHcch-hhHHH--HHHHHHHHHHHhcCc-cHHHHHHHHHHHHHHHH
Confidence            4 5566677788888888865432 11111  145677788888766 78899999888888766

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.84  E-value=1.2e-06  Score=66.34  Aligned_cols=107  Identities=14%  Similarity=0.091  Sum_probs=81.3

Q ss_pred             hcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHH
Q 015939          189 REGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQIL  268 (398)
Q Consensus       189 ~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~L  268 (398)
                      ++.++.+|..|+.+|..+.            ...+++|+..|.++ ++.++..|+.+|.++..          .++++.|
T Consensus         2 ~D~~~~VR~~A~~aL~~~~------------~~~~~~L~~~l~d~-~~~vR~~a~~~L~~~~~----------~~~~~~L   58 (111)
T d1te4a_           2 ADENKWVRRDVSTALSRMG------------DEAFEPLLESLSNE-DWRIRGAAAWIIGNFQD----------ERAVEPL   58 (111)
T ss_dssp             CSSCCCSSSSCCSSTTSCS------------STTHHHHHHGGGCS-CHHHHHHHHHHHGGGCS----------HHHHHHH
T ss_pred             CCcCHHHHHHHHHHHHHhC------------HHHHHHHHHHHcCC-CHHHHHHHHHHHHhcch----------hhhHHHH
Confidence            3445666666666654431            23578899999988 89999999999987542          2367899


Q ss_pred             HHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHH
Q 015939          269 TRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVI  331 (398)
Q Consensus       269 v~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L  331 (398)
                      +.+|.  ++++.++..|+.+|..+..           .+.++.|..++.+.++.+++.|+.+|
T Consensus        59 ~~~l~--d~~~~VR~~a~~aL~~i~~-----------~~~~~~L~~ll~d~~~~vr~~A~~aL  108 (111)
T d1te4a_          59 IKLLE--DDSGFVRSGAARSLEQIGG-----------ERVRAAMEKLAETGTGFARKVAVNYL  108 (111)
T ss_dssp             HHHHH--HCCTHHHHHHHHHHHHHCS-----------HHHHHHHHHHTTSCCTHHHHHHHHHG
T ss_pred             Hhhhc--cchhHHHHHHHHHHHHhCc-----------cchHHHHHHHHcCCCHHHHHHHHHHH
Confidence            99995  4789999999999987742           34677788888889999999999877

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.84  E-value=0.00081  Score=67.29  Aligned_cols=277  Identities=11%  Similarity=0.026  Sum_probs=165.6

Q ss_pred             HHHHHHH-HHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccc
Q 015939           87 VRVWIEK-IKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENG  165 (398)
Q Consensus        87 i~~l~~~-l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~  165 (398)
                      +..++.. +.+++.+  .+.+|-..|..+...++         ++++..|...+.+ ...+..++..|+-.|.+......
T Consensus         6 ~~~~L~~~~~s~d~~--~r~~Ae~~L~~~~~~~~---------~~~~~~l~~il~~-~~~~~~~r~~A~i~lkn~i~~~~   73 (861)
T d2bpta1           6 FAQLLENSILSPDQN--IRLTSETQLKKLSNDNF---------LQFAGLSSQVLID-ENTKLEGRILAALTLKNELVSKD   73 (861)
T ss_dssp             HHHHHHHHHHCSSHH--HHHHHHHHHHHHHHHCH---------HHHHHHHHHHHTC-TTSCHHHHHHHHHHHHTTTCCSS
T ss_pred             HHHHHHHHhcCCCHH--HHHHHHHHHHHHHhcCc---------hHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHHhhccc
Confidence            4444443 5566554  78888888887764422         2667778888876 33445556777777777654322


Q ss_pred             hHHH--hhHhh---hc---cCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHH
Q 015939          166 VKEK--LNRLI---LN---TYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQA  237 (398)
Q Consensus       166 ~~~~--~~~~i---l~---~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~  237 (398)
                      ....  .....   +.   ...+-..++..|.+.+..+|..++.++..++..+-...   .-...++.|+..+.+..+..
T Consensus        74 ~~~~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~---~wpeli~~L~~~~~s~~~~~  150 (861)
T d2bpta1          74 SVKTQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHG---AWPELMKIMVDNTGAEQPEN  150 (861)
T ss_dssp             HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGT---CCHHHHHHHHHHTSTTSCHH
T ss_pred             chhhhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcC---chHHHHHHHHHHhcCCCcHH
Confidence            1100  00000   00   11234567778888899999999999998876521110   11457888888888775666


Q ss_pred             HHHHHHHHHHHhcCCcchHH-HHHH--cCChHHHHHHhcccCcchhhHHHHHHHHHHHhCC-HHHHHHHhhccCcHHHHH
Q 015939          238 LNDAILSILITLSVYRSVKA-QLVE--LGMVQILTRILSDSRTQILTVEKSIKMLSIVATC-SEGRLALSEEASCAGRVV  313 (398)
Q Consensus       238 ~~~~a~~aL~~Ls~~~~~~~-~~v~--~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~-~~~~~~i~~~~g~v~~Lv  313 (398)
                      .+..++.+|..++..-.... .+..  ...+..++..+.....+..++..++.+|.++... +..-.........++.+.
T Consensus       151 ~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~  230 (861)
T d2bpta1         151 VKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVC  230 (861)
T ss_dssp             HHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhhhhHHHHhHH
Confidence            78889999998864322111 1111  1233444444443445678889999999987652 222111111124566777


Q ss_pred             HHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          314 ERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       314 ~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      ..+...++..+..++.+|..++.... +.....+.+  .+..+......+.++.++..+..++..+.+
T Consensus       231 ~~~~~~~~~~~~~~~~~l~~i~~~~~-~~~~~~l~~--~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~  295 (861)
T d2bpta1         231 EATQAEDIEVQAAAFGCLCKIMSKYY-TFMKPYMEQ--ALYALTIATMKSPNDKVASMTVEFWSTICE  295 (861)
T ss_dssp             HHHTCSCHHHHHHHHHHHHHHHHHHG-GGCHHHHHH--THHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             HHhcCCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHH--HHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence            88888999999999999999886432 122222221  244444444445578888888887776654

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=0.00084  Score=68.52  Aligned_cols=262  Identities=15%  Similarity=0.076  Sum_probs=152.2

Q ss_pred             chhHHHHHHHHHHHhhhhhhh-hhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhccCC
Q 015939          101 ENSCVDYLVKVAKFATGCEAN-RRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILNTYN  179 (398)
Q Consensus       101 ~~~~~~al~~L~~l~~~~~~~-r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g  179 (398)
                      |..+..|+.++..++.+..+. ...+.   ..++.|+..+++   +++.++..++++|..++..-... .....   ...
T Consensus       409 ~~~reaa~~alg~i~eg~~~~~~~~l~---~li~~l~~~l~d---~~~~Vr~~a~~~l~~~~~~~~~~-~~~~~---~~~  478 (888)
T d1qbkb_         409 WVVKESGILVLGAIAEGCMQGMIPYLP---ELIPHLIQCLSD---KKALVRSITCWTLSRYAHWVVSQ-PPDTY---LKP  478 (888)
T ss_dssp             HHHHHHHHHHHHHHTTTSHHHHTTTHH---HHHHHHHHHTTS---SCHHHHHHHHHHHHHTHHHHHSS-CHHHH---TTT
T ss_pred             hHHHHHHHHHhhhhhhhHHHHhcccch---hhhHHHHHhccC---CCHHHHHHHHHHHHHHHHHhhhh-hhhhh---hhh
Confidence            567788888888887653322 22222   457777777765   45667799999998887421110 00111   346


Q ss_pred             ChHHHHHHHhcCChhhHHHHHHHHHHhhcCc--hhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC---Ccc
Q 015939          180 CLPLFLEILREGNLDSKIGSIKILDSISLDN--ESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV---YRS  254 (398)
Q Consensus       180 ~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~--~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~---~~~  254 (398)
                      .++.++..+.+.++.++..|+.+|..+....  .....   ....++.|+..++.. +.+.+..+..++..+..   ..-
T Consensus       479 ~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~---~~~il~~l~~~l~~~-~~~~~~~~~~al~~l~~~~~~~~  554 (888)
T d1qbkb_         479 LMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPY---LAYILDTLVFAFSKY-QHKNLLILYDAIGTLADSVGHHL  554 (888)
T ss_dssp             HHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGG---HHHHHHHHHHHTTTC-CHHHHHHHHHHHHHHHHHHGGGG
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhH---HHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHhhhccc
Confidence            7889999999999999999999999998652  22222   145778888888876 55566666666666642   111


Q ss_pred             hHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC--CH---HHHHHHhhccCcHHHHHHHH--------hc---
Q 015939          255 VKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT--CS---EGRLALSEEASCAGRVVERV--------MK---  318 (398)
Q Consensus       255 ~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~--~~---~~~~~i~~~~g~v~~Lv~~l--------~~---  318 (398)
                      ++..+.+. .++.++........+.......+.+|..++.  ..   .....+..  .++..+...+        ..   
T Consensus       555 ~~~~~~~~-l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~  631 (888)
T d1qbkb_         555 NKPEYIQM-LMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQ--RCVNLVQKTLAQAMLNNAQPDQY  631 (888)
T ss_dssp             CSHHHHHH-HHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHH--HHHHHHHHHHHHHHHHHHCTTTS
T ss_pred             cchHHHHH-HHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHH--HHHHHHHHHHHHHHHHhcccccc
Confidence            22233322 4556666554222333444445555555432  11   11111111  1111111111        11   


Q ss_pred             --cChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          319 --VGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       319 --~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                        .+......++.++..+....+ ......+.....++.++..++.. ++.+|+.|..++..+..
T Consensus       632 ~~~~~~~~~~~l~~l~~l~~~l~-~~~~~~~~~~~l~~~l~~~l~~~-~~~vr~~a~~llgdl~~  694 (888)
T d1qbkb_         632 EAPDKDFMIVALDLLSGLAEGLG-GNIEQLVARSNILTLMYQCMQDK-MPEVRQSSFALLGDLTK  694 (888)
T ss_dssp             CCCCTHHHHHHHHHHHHHHHHHT-TTTHHHHHTSCHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHHHHhh-hhhhhhhhHhhHHHHHHHHhCCC-ChHHHHHHHHHHHHHHH
Confidence              234445566777777665332 34445555666777787878765 78999999988887776

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=0.0048  Score=62.68  Aligned_cols=218  Identities=11%  Similarity=0.099  Sum_probs=148.1

Q ss_pred             HHHHHHHHHHHHhhhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC--chhHHHhhchhhHHH
Q 015939          147 IAVLESAVRVLNLIVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD--NESKRRVLETENLLS  224 (398)
Q Consensus       147 ~~~~~~al~~L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~~g~i~  224 (398)
                      ......++.++..+...-...   -...+.....++.+...+++.+.++|..|..++..|+..  +.....+   ...++
T Consensus       636 ~~~~~~~l~~l~~l~~~l~~~---~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l---~~~~~  709 (888)
T d1qbkb_         636 KDFMIVALDLLSGLAEGLGGN---IEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCI---ADFMP  709 (888)
T ss_dssp             THHHHHHHHHHHHHHHHHTTT---THHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGH---HHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhh---hhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHH---HHHHH
Confidence            344566666666655322211   122144556788888999988999999999999988765  2222222   45788


Q ss_pred             HHHHHhccccCHHHHHHHHHHHHHhcCC-cchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC-CHHHHHHH
Q 015939          225 ALFDYLKLAEDQALNDAILSILITLSVY-RSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT-CSEGRLAL  302 (398)
Q Consensus       225 ~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~-~~~~~~~i  302 (398)
                      .|+.-|.+. +++++.++++++..++.. .+.-...+. ..++.|+.+++++.....+.++++.+|..|+. +++.....
T Consensus       710 ~l~~~L~~~-~~~v~~~a~~~ig~ia~~~~~~~~py~~-~il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~p~~~~~~  787 (888)
T d1qbkb_         710 ILGTNLNPE-FISVCNNATWAIGEISIQMGIEMQPYIP-MVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPM  787 (888)
T ss_dssp             HHHHTCCGG-GHHHHHHHHHHHHHHHHHTGGGGGGGSH-HHHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHCHHHHGGG
T ss_pred             HHHHHhCcC-CHHHHHHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHCHHHHHhh
Confidence            888888887 788999999999998743 222222222 37888999997655566789999999999876 66655444


Q ss_pred             hhccCcHHHHHHHHhc-cChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhc--CcHHHHHHHHHHHHHH
Q 015939          303 SEEASCAGRVVERVMK-VGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSE--NEGIVRKMCGDLVKVL  379 (398)
Q Consensus       303 ~~~~g~v~~Lv~~l~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~--~~~~~k~~A~~lL~~l  379 (398)
                      .  +..++.++..|.. .+...++.|...+..+...++  ...     .+.+..++..+-+.  ..+.++.....+|..+
T Consensus       788 l--~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p--~~~-----~~~l~~~~~~i~~~~~~~~~~~~~~~~~l~~~  858 (888)
T d1qbkb_         788 L--QQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNP--SGV-----IQDFIFFCDAVASWINPKDDLRDMFCKILHGF  858 (888)
T ss_dssp             G--GGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCG--GGT-----GGGHHHHHHHHTTCSSCCHHHHHHHHHHHHHH
T ss_pred             H--HHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCc--HHH-----HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence            4  2578889988876 677778899988888776542  211     13455555555443  3567888888888776


Q ss_pred             hc
Q 015939          380 GK  381 (398)
Q Consensus       380 ~~  381 (398)
                      ..
T Consensus       859 ~~  860 (888)
T d1qbkb_         859 KN  860 (888)
T ss_dssp             HH
T ss_pred             HH
Confidence            64

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.66  E-value=0.002  Score=59.84  Aligned_cols=226  Identities=10%  Similarity=0.121  Sum_probs=146.9

Q ss_pred             HHHHHHHHHHHHhhhcccchHHHhhHhhhc-cCCChHHHHHHHhc----------------C-ChhhHHHHHHHHHHhhc
Q 015939          147 IAVLESAVRVLNLIVNENGVKEKLNRLILN-TYNCLPLFLEILRE----------------G-NLDSKIGSIKILDSISL  208 (398)
Q Consensus       147 ~~~~~~al~~L~~l~~~~~~~~~~~~~il~-~~g~i~~Lv~lL~~----------------~-~~~~~~~a~~~L~~L~~  208 (398)
                      .....-++..|..+...++.    |..+.. ....++.|+++|..                + +...+-+++.+++-|+.
T Consensus       179 ~~~~~i~v~~lq~llr~~~~----R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF  254 (477)
T d1ho8a_         179 MDTCYVCIRLLQELAVIPEY----RDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTF  254 (477)
T ss_dssp             HHHHHHHHHHHHHHHTSHHH----HHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTT
T ss_pred             cchHHHHHHHHHHHhcCccH----HHHHHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHc
Confidence            34456677778777766554    444211 33456677777653                1 34678889999999999


Q ss_pred             CchhHHHhhch-hhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcc------hHHHHHHcCChHHHHHHhcccCcchhh
Q 015939          209 DNESKRRVLET-ENLLSALFDYLKLAEDQALNDAILSILITLSVYRS------VKAQLVELGMVQILTRILSDSRTQILT  281 (398)
Q Consensus       209 ~~~~~~~i~~~-~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~------~~~~~v~~g~v~~Lv~lL~~~~~~~~~  281 (398)
                      +++....+... .+.++.|+++++...-.++.+-++.+|.|+.....      ....|+..++.+.+-.+....=.|+++
T Consensus       255 ~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl  334 (477)
T d1ho8a_         255 NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEEL  334 (477)
T ss_dssp             SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHH
T ss_pred             CHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHH
Confidence            98777777652 36799999999877678899999999999975421      233455666665544444333356766


Q ss_pred             HHHHHHHHH-------HHhCCHHHHHHH------------------------hhcc-CcHHHHHHHHhc----------c
Q 015939          282 VEKSIKMLS-------IVATCSEGRLAL------------------------SEEA-SCAGRVVERVMK----------V  319 (398)
Q Consensus       282 ~~~al~~L~-------~La~~~~~~~~i------------------------~~~~-g~v~~Lv~~l~~----------~  319 (398)
                      .+.--.+-.       .+++-++-..++                        -++. -.+..|+++|.+          .
T Consensus       335 ~edl~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~  414 (477)
T d1ho8a_         335 RQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQ  414 (477)
T ss_dssp             HHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHH
T ss_pred             HHHHHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCC
Confidence            643322222       222222222222                        1111 248889999863          2


Q ss_pred             ChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHH
Q 015939          320 GKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVL  379 (398)
Q Consensus       320 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l  379 (398)
                      ++.+..-|+.=+..++.+.  ++-+..+-+.|+=..+..+|... ++++|..|..+++.+
T Consensus       415 D~~~lAVAc~DiGefvr~~--P~gr~il~~lg~K~~vM~Lm~h~-d~~Vr~eAL~avQkl  471 (477)
T d1ho8a_         415 EKIIIQVALNDITHVVELL--PESIDVLDKTGGKADIMELLNHS-DSRVKYEALKATQAI  471 (477)
T ss_dssp             HHHHHHHHHHHHHHHHHHC--TTHHHHHHHHSHHHHHHHHTSCS-SHHHHHHHHHHHHHH
T ss_pred             CcceeehhhhhHHHHHHHC--cchhHHHHHcCcHHHHHHHhcCC-CHHHHHHHHHHHHHH
Confidence            4445555666677888876  46677777888888888888655 899999998887765

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=0.00061  Score=62.90  Aligned_cols=255  Identities=12%  Similarity=0.080  Sum_probs=148.6

Q ss_pred             HHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccch
Q 015939           87 VRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGV  166 (398)
Q Consensus        87 i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~  166 (398)
                      ++.++..+.+.+.+.+.+..|++.+..+.......-..-...+...+.+..++.+   .+.++...++.+|..+......
T Consensus       173 l~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~~~~~~~l~~i~~~~~~  249 (458)
T d1ibrb_         173 LTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQC---PDTRVRVAALQNLVKIMSLYYQ  249 (458)
T ss_dssp             HHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTC---SSHHHHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHhcccccCHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHhHhhHHHHhcC---CCHHHHHHHHHHHHHHHHHhHH
Confidence            4555556665544445677788888877654332221111111334455555554   3456678888998888754332


Q ss_pred             HHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHH-----------------Hh---hchhhHHHHH
Q 015939          167 KEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKR-----------------RV---LETENLLSAL  226 (398)
Q Consensus       167 ~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~-----------------~i---~~~~g~i~~L  226 (398)
                      .  ....  ......+.+...+++.+.+++..++..+..++.......                 ..   ......++.+
T Consensus       250 ~--~~~~--l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  325 (458)
T d1ibrb_         250 Y--METY--MGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPIL  325 (458)
T ss_dssp             G--CTTT--TTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHH
T ss_pred             H--HHHH--HHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhH
Confidence            0  0011  122334455666677788999999988888764321000                 00   0012344455


Q ss_pred             HHHhccc------cCHHHHHHHHHHHHHhcCCc-chHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCH--H
Q 015939          227 FDYLKLA------EDQALNDAILSILITLSVYR-SVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCS--E  297 (398)
Q Consensus       227 v~lL~~~------~~~~~~~~a~~aL~~Ls~~~-~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~--~  297 (398)
                      ...+.+.      .+...+..+..++..++... +..   .. ..++.+.+.++  +++..+++.|+.+|..++...  +
T Consensus       326 ~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~~~---~~-~l~~~i~~~l~--s~~~~~r~aal~~l~~i~~~~~~~  399 (458)
T d1ibrb_         326 TQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDI---VP-HVLPFIKEHIK--NPDWRYRDAAVMAFGCILEGPEPS  399 (458)
T ss_dssp             HHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTTTH---HH-HHHHHHHHHTT--CSSHHHHHHHHHHHHHTSSSSCTT
T ss_pred             HhhhhcchhhhccccccHHHHHHHHHHHHHHhccHhh---hh-HHHHHHHHHhc--CCCHHHHHHHHHHHHHHHHhcCHh
Confidence            5554422      12346778888888886432 221   11 14566667774  467889999999999998632  2


Q ss_pred             HHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHh
Q 015939          298 GRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQ  361 (398)
Q Consensus       298 ~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~  361 (398)
                      ......  ...++.++..+.+.++.++..|+.+|..++..-++     .....-.++.++..|-
T Consensus       400 ~~~~~l--~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~-----~~~~~~~l~~ll~~ll  456 (458)
T d1ibrb_         400 QLKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE-----AAINDVYLAPLLQCLI  456 (458)
T ss_dssp             TTCTTT--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGG-----GCCSTTTHHHHHHHHH
T ss_pred             HHHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhc-----ccchhhHHHHHHHHHh
Confidence            223333  36889999999999999999999999998753221     1112334666665553

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.59  E-value=9.4e-05  Score=55.37  Aligned_cols=88  Identities=10%  Similarity=0.128  Sum_probs=72.2

Q ss_pred             CChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHH
Q 015939          179 NCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQ  258 (398)
Q Consensus       179 g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~  258 (398)
                      ..++.|+..|.+.++.+|..|+++|..+.          . .+.++.|+.+|++. ++.++..|+.+|..+..       
T Consensus        22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~~----------~-~~~~~~L~~~l~d~-~~~VR~~a~~aL~~i~~-------   82 (111)
T d1te4a_          22 EAFEPLLESLSNEDWRIRGAAAWIIGNFQ----------D-ERAVEPLIKLLEDD-SGFVRSGAARSLEQIGG-------   82 (111)
T ss_dssp             TTHHHHHHGGGCSCHHHHHHHHHHHGGGC----------S-HHHHHHHHHHHHHC-CTHHHHHHHHHHHHHCS-------
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcc----------h-hhhHHHHHhhhccc-hhHHHHHHHHHHHHhCc-------
Confidence            46788999999999999999999986542          2 56789999999988 89999999999988742       


Q ss_pred             HHHcCChHHHHHHhcccCcchhhHHHHHHHHH
Q 015939          259 LVELGMVQILTRILSDSRTQILTVEKSIKMLS  290 (398)
Q Consensus       259 ~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~  290 (398)
                         .++++.|..++.  ++++.++..|+.+|.
T Consensus        83 ---~~~~~~L~~ll~--d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          83 ---ERVRAAMEKLAE--TGTGFARKVAVNYLE  109 (111)
T ss_dssp             ---HHHHHHHHHHTT--SCCTHHHHHHHHHGG
T ss_pred             ---cchHHHHHHHHc--CCCHHHHHHHHHHHH
Confidence               346788888995  478899998887764

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.40  E-value=0.013  Score=54.25  Aligned_cols=245  Identities=12%  Similarity=0.135  Sum_probs=156.6

Q ss_pred             CcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhc-cCC-ChHHHHHHHhcCChhhHHHHHHHHHHhh
Q 015939          130 GFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILN-TYN-CLPLFLEILREGNLDSKIGSIKILDSIS  207 (398)
Q Consensus       130 g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~-~~g-~i~~Lv~lL~~~~~~~~~~a~~~L~~L~  207 (398)
                      -++..++++|+. . +..++.+..+..+..|..+++..+..-.. .. +.. .-+.+...|.+++.-....+..++..++
T Consensus        74 ~~~~~~l~lL~~-~-sk~d~vqyvL~Li~dLL~~d~~~~~~~~~-~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~  150 (477)
T d1ho8a_          74 KTLIPLIHLLST-S-DNEDCKKSVQNLIAELLSSDKYGDDTVKF-FQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLV  150 (477)
T ss_dssp             TTHHHHHHHHHS-C-CCHHHHHHHHHHHHHHHHCSSSSHHHHHH-HHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhh-c-CcHHHHHHHHHHHHHHHhcCcchhHHHHH-HhhCccchhHHHHHhccCchhHHHHHHHHHHHHHH
Confidence            358888999987 2 33456788888888877765543221122 22 222 2345555565666666777777888887


Q ss_pred             cCchhHHHhhchhhHHHH---HHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHH--HcCChHHHHHHhccc-------
Q 015939          208 LDNESKRRVLETENLLSA---LFDYLKLAEDQALNDAILSILITLSVYRSVKAQLV--ELGMVQILTRILSDS-------  275 (398)
Q Consensus       208 ~~~~~~~~i~~~~g~i~~---Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v--~~g~v~~Lv~lL~~~-------  275 (398)
                      ..........   +.+..   +...|.+..+.+....++.+|..|...++.|..+.  +...++.|+++|+..       
T Consensus       151 ~~~~~~~~~~---e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~  227 (477)
T d1ho8a_         151 QNGLHNVKLV---EKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLAT  227 (477)
T ss_dssp             STTTCCHHHH---HHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-----
T ss_pred             hccccccchH---HHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccccc
Confidence            6532222211   12222   22333333367778888899999999999998885  455678888877521       


Q ss_pred             --------CcchhhHHHHHHHHHHHhCCHHHHHHHhhc-cCcHHHHHHHHhc-cChhHHHHHHHHHHHhhccCCC---hh
Q 015939          276 --------RTQILTVEKSIKMLSIVATCSEGRLALSEE-ASCAGRVVERVMK-VGKTAREDAVVVIWSMCCVYKD---AR  342 (398)
Q Consensus       276 --------~~~~~~~~~al~~L~~La~~~~~~~~i~~~-~g~v~~Lv~~l~~-~~~~~~~~a~~~L~~l~~~~~~---~~  342 (398)
                              .....++-.++-++..|+-.++....+..+ .+.|+.++.+++. ...++.+-++.+|.|+.....+   ..
T Consensus       228 ~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~KEKvvRv~l~~l~Nll~~~~~~~~~~  307 (477)
T d1ho8a_         228 RIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKV  307 (477)
T ss_dssp             --------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHH
T ss_pred             hhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhhhhhH
Confidence                    112356778999999999999988888743 1458899998875 7889999999999999865321   12


Q ss_pred             HHHHHHhcCCHHHHHHHHhh--cCcHHHHHHHHHHHHHHhc
Q 015939          343 VKEAVVNSNGLTKLLLVMQS--ENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       343 ~~~~~~~~g~~~~Ll~~l~~--~~~~~~k~~A~~lL~~l~~  381 (398)
                      ....++..++++ ++..|+.  -.++.+.+--..+-..|.+
T Consensus       308 ~~~~~v~~~~l~-~l~~L~~r~~~Dedl~edl~~L~~~L~~  347 (477)
T d1ho8a_         308 IKQLLLLGNALP-TVQSLSERKYSDEELRQDISNLKEILEN  347 (477)
T ss_dssp             HHHHHHHHCHHH-HHHHHHSSCCSSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcchhH-HHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence            345566666664 5666643  3566666655555444443

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.36  E-value=0.0039  Score=62.35  Aligned_cols=273  Identities=10%  Similarity=-0.009  Sum_probs=158.5

Q ss_pred             HHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchH-H
Q 015939           90 WIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVK-E  168 (398)
Q Consensus        90 l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~-~  168 (398)
                      +++..-+++.  +.+..|-..|..+...+.         ||++..|...+.+ ...+..++..|+-.|.|........ .
T Consensus         6 ~L~~~~s~d~--~~r~~Ae~~L~~~~~~~~---------~~f~~~L~~i~~~-~~~~~~iR~~A~i~lKn~i~~~~~~~~   73 (876)
T d1qgra_           6 ILEKTVSPDR--LELEAAQKFLERAAVENL---------PTFLVELSRVLAN-PGNSQVARVAAGLQIKNSLTSKDPDIK   73 (876)
T ss_dssp             HHHGGGCSCH--HHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHC-TTSCHHHHHHHHHHHHHHHCCSSHHHH
T ss_pred             HHHHHhCcCH--HHHHHHHHHHHHHHhcCh---------hHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHhhccccchh
Confidence            3444444444  377778888888775532         2777888888876 4444556677777777765432110 0


Q ss_pred             HhhHh---hhc---cCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccc-cCHHHHHH
Q 015939          169 KLNRL---ILN---TYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLA-EDQALNDA  241 (398)
Q Consensus       169 ~~~~~---il~---~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~-~~~~~~~~  241 (398)
                      .....   .+.   ...+...++..|.+.+. .+..++.++..++..+-..   ..-.+.++.|+..+.++ .+...+..
T Consensus        74 ~~~~~~~~~i~~~~k~~ik~~ll~~l~~~~~-~~~~~a~~i~~i~~~~~p~---~~Wpeli~~L~~~l~~~~~~~~~~~~  149 (876)
T d1qgra_          74 AQYQQRWLAIDANARREVKNYVLHTLGTETY-RPSSASQCVAGIACAEIPV---NQWPELIPQLVANVTNPNSTEHMKES  149 (876)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHTTTCCS-SSCHHHHHHHHHHHHHGGG---TCCTTHHHHHHHHHHCTTCCHHHHHH
T ss_pred             hhhhcccccCCHHHHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHCCc---cccHHHHHHHHHHhcCCCCcHHHHHH
Confidence            00000   000   12345667778876654 4556788888877552111   11157899999988765 24667888


Q ss_pred             HHHHHHHhcCCcch-HHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCC-HHHHHHHhhccCcHHHHHHHHhcc
Q 015939          242 ILSILITLSVYRSV-KAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATC-SEGRLALSEEASCAGRVVERVMKV  319 (398)
Q Consensus       242 a~~aL~~Ls~~~~~-~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~-~~~~~~i~~~~g~v~~Lv~~l~~~  319 (398)
                      ++.+|..++..-.. ...-.-...++.++..+.+.+.+..++..++.++.+.... ...-.......-.++.+...+...
T Consensus       150 ~l~~l~~i~~~~~~~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~  229 (876)
T d1qgra_         150 TLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCP  229 (876)
T ss_dssp             HHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHTTCS
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhcCC
Confidence            99999988643221 1111122357778888864445677888899888887652 211110000112344555666668


Q ss_pred             ChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          320 GKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       320 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      ++.++..++.+|..+.....  +....-......+.+...+... .+.++..+...+..+.+
T Consensus       230 ~~~v~~~~~~~l~~l~~~~~--~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~i~~  288 (876)
T d1qgra_         230 DTRVRVAALQNLVKIMSLYY--QYMETYMGPALFAITIEAMKSD-IDEVALQGIEFWSNVCD  288 (876)
T ss_dssp             SHHHHHHHHHHHHHHHHHSG--GGCHHHHTTTHHHHHHHHHTCS-SHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHHH
Confidence            88999999999999887542  2222223333444444455544 67777777666555543

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.26  E-value=0.018  Score=57.37  Aligned_cols=282  Identities=11%  Similarity=0.072  Sum_probs=160.9

Q ss_pred             HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhccc
Q 015939           85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNEN  164 (398)
Q Consensus        85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~  164 (398)
                      +-++.+++.+.+++.....+..++..|..++..-... ......+..++.++..+.+ .+.+..+...++.++.+.....
T Consensus       128 eli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~~-~~~~~~~~il~~i~~~l~~-~~~~~~v~~~a~~~l~~~~~~~  205 (876)
T d1qgra_         128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE-QLQDKSNEILTAIIQGMRK-EEPSNNVKLAATNALLNSLEFT  205 (876)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHH-HHGGGHHHHHHHHHHHHST-TCSCHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHcC-cCccHHHHHHHHHHHHHHHHHh
Confidence            4677888888776654334556788888877542111 1111122567788888876 5555667788888887665432


Q ss_pred             chHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chh-HHHhhchhhHHHHHHHHhccccCHHHHHHH
Q 015939          165 GVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NES-KRRVLETENLLSALFDYLKLAEDQALNDAI  242 (398)
Q Consensus       165 ~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~-~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a  242 (398)
                      ..... ...  ...-.++.+...+...+.+++..++.+|..+... ++. ...+ . ......+...+.+. +.+....+
T Consensus       206 ~~~~~-~~~--~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~-~-~~l~~~~~~~~~~~-~~~~~~~~  279 (876)
T d1qgra_         206 KANFD-KES--ERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-G-PALFAITIEAMKSD-IDEVALQG  279 (876)
T ss_dssp             HHHHT-SHH--HHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHH-T-TTHHHHHHHHHTCS-SHHHHHHH
T ss_pred             hhhhh-HHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHH-H-HHHHHHHHHHhccc-cHHHHHHH
Confidence            22100 000  0112466677777788999999999999988765 322 2222 2 23445555566665 67777777


Q ss_pred             HHHHHHhcCCcc---------------------hHHHHHHcCChHHHHHHhccc-----CcchhhHHHHHHHHHHHhCCH
Q 015939          243 LSILITLSVYRS---------------------VKAQLVELGMVQILTRILSDS-----RTQILTVEKSIKMLSIVATCS  296 (398)
Q Consensus       243 ~~aL~~Ls~~~~---------------------~~~~~v~~g~v~~Lv~lL~~~-----~~~~~~~~~al~~L~~La~~~  296 (398)
                      +..+..++....                     .-........++.+...+...     ..+..+...|..+|..++...
T Consensus       280 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~  359 (876)
T d1qgra_         280 IEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCC  359 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHh
Confidence            777666653211                     001111112344444544321     122246666777777766422


Q ss_pred             HHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHH
Q 015939          297 EGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLV  376 (398)
Q Consensus       297 ~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL  376 (398)
                      .  ..+.  ...++.+...+.+.+...++.++..+..+..... ...... .-...++.++..++.. ++.+|..|..++
T Consensus       360 ~--~~~~--~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~-~~~~~~-~~~~~~~~l~~~l~d~-~~~vr~~a~~~l  432 (876)
T d1qgra_         360 E--DDIV--PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE-PSQLKP-LVIQAMPTLIELMKDP-SVVVRDTAAWTV  432 (876)
T ss_dssp             G--GGGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC-HHHHHH-HHHHHHHHHHHHHTCS-SHHHHHHHHHHH
T ss_pred             h--hhhh--hhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhh-HHHHHH-HHHHHHHHHHHhhcCC-ccHHHHHHHHHH
Confidence            1  1111  1123334444445777888888888877765321 222222 2233677788888765 899999999999


Q ss_pred             HHHhc
Q 015939          377 KVLGK  381 (398)
Q Consensus       377 ~~l~~  381 (398)
                      ..+.+
T Consensus       433 ~~~~~  437 (876)
T d1qgra_         433 GRICE  437 (876)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            88877

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.0011  Score=69.61  Aligned_cols=218  Identities=11%  Similarity=0.108  Sum_probs=132.3

Q ss_pred             CCcHHHHHHHHHHHHhhhcccchH-HHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhH
Q 015939          144 RSEIAVLESAVRVLNLIVNENGVK-EKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLDNESKRRVLETENL  222 (398)
Q Consensus       144 ~~~~~~~~~al~~L~~l~~~~~~~-~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~  222 (398)
                      +++...+..|+.-|.+....+.-. +...     ...+++.|+..|+..+.++|..|+.+|..|...-..  ...  ...
T Consensus        14 ~~D~d~R~ma~~dl~~~l~~~~~~~~~~~-----~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~--~~~--~~l   84 (1207)
T d1u6gc_          14 SSDKDFRFMATNDLMTELQKDSIKLDDDS-----ERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--YQV--ETI   84 (1207)
T ss_dssp             CSSHHHHHHHHHHHHHHTSSSCCSCCTTH-----HHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--HHH--HHH
T ss_pred             CCCHhHHHHHHHHHHHHHhhcccccChHH-----HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcH--hhH--HHH
Confidence            345556678887666654322110 0000     113588999999999999999999999998766221  111  356


Q ss_pred             HHHHHHHhccccCHHHHHHHHHHHHHhcCC-------cchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCC
Q 015939          223 LSALFDYLKLAEDQALNDAILSILITLSVY-------RSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVATC  295 (398)
Q Consensus       223 i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~-------~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~  295 (398)
                      ++.|+..+.++ +.+.+..+..+|..+...       ...... +-...++.+...+. ...+..++..++.+|..+...
T Consensus        85 ~~~L~~~l~~~-~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~-~~~~l~~~l~~~~~-~~~~~~v~~~al~~l~~l~~~  161 (1207)
T d1u6gc_          85 VDTLCTNMLSD-KEQLRDISSIGLKTVIGELPPASSGSALAAN-VCKKITGRLTSAIA-KQEDVSVQLEALDIMADMLSR  161 (1207)
T ss_dssp             HHHHHHHTTCS-SSHHHHHHHHHHHHHHHHCC-----CCTHHH-HHHHHHHHHHHHHS-CCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCC-chhhhHHHHHHHHHHHHhcccccccchhHHH-HHHHHHHHHHHhhc-CCCCHHHHHHHHHHHHHHHHH
Confidence            78888877776 566777777777665321       111111 11224445555554 245677888899888887641


Q ss_pred             -HHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHH
Q 015939          296 -SEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGD  374 (398)
Q Consensus       296 -~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~  374 (398)
                       +..-....  ...++.++..+.+.+..+++.|+.+|..++...++ .     .-...++.++..+..+.+...++.+..
T Consensus       162 ~g~~l~~~~--~~il~~l~~~l~~~~~~vR~~A~~~l~~l~~~~~~-~-----~~~~~~~~ll~~l~~~~~~~~~~~~~~  233 (1207)
T d1u6gc_         162 QGGLLVNFH--PSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGN-I-----VFVDLIEHLLSELSKNDSMSTTRTYIQ  233 (1207)
T ss_dssp             TCSSCTTTH--HHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----------CTTHHHHHHHHHHHTCSSCSCTTHHH
T ss_pred             hhHhhHHHH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHCCH-H-----HHHHHHHHHHHHHccCCCHHHHHHHHH
Confidence             11000001  12455566666678899999999999999876432 1     123457777777766556666677777


Q ss_pred             HHHHHhc
Q 015939          375 LVKVLGK  381 (398)
Q Consensus       375 lL~~l~~  381 (398)
                      ++..+.+
T Consensus       234 ~l~~l~~  240 (1207)
T d1u6gc_         234 CIAAISR  240 (1207)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7766665

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.85  E-value=0.061  Score=52.97  Aligned_cols=277  Identities=14%  Similarity=0.090  Sum_probs=155.2

Q ss_pred             HHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhh-hhhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcc
Q 015939           85 QEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEAN-RRFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNE  163 (398)
Q Consensus        85 ~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~-r~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~  163 (398)
                      +-++.++..+.+.+. ...+..|+..|..++...... ...+......+..++..+.+ .+.+..++..++.++.++...
T Consensus       134 eli~~L~~~~~s~~~-~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~-~~~~~~v~~~a~~~l~~~~~~  211 (861)
T d2bpta1         134 ELMKIMVDNTGAEQP-ENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQS-TETSKAVRLAALNALADSLIF  211 (861)
T ss_dssp             HHHHHHHHHTSTTSC-HHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHST-TCCCHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhc-ccCCHHHHHHHHHHHHHHHHH
Confidence            446666666665543 234556788888877543222 22222111223333444444 344567778899998887654


Q ss_pred             cchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chh-HHHhhchhhHHHHHH-HHhccccCHHHHH
Q 015939          164 NGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NES-KRRVLETENLLSALF-DYLKLAEDQALND  240 (398)
Q Consensus       164 ~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~-~~~i~~~~g~i~~Lv-~lL~~~~~~~~~~  240 (398)
                      -...... .  ......++.+...+...+.+++..+..+|..++.. .+. ...+   ...+..+. ...++. +++.+.
T Consensus       212 ~~~~~~~-~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l---~~~l~~l~~~~~~~~-~~~v~~  284 (861)
T d2bpta1         212 IKNNMER-E--GERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM---EQALYALTIATMKSP-NDKVAS  284 (861)
T ss_dssp             CHHHHTS-H--HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH---HHTHHHHHHHHTTCS-SHHHHH
T ss_pred             HhHhHHh-h--hhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHhcCc-cHHHHH
Confidence            3321000 0  11223567788888889999999999999988765 221 1111   12333333 344444 788888


Q ss_pred             HHHHHHHHhcCCcchHH-HHH----------------HcCChHHHHHHhcccC-----cchhhHHHHHHHHHHHhCCHHH
Q 015939          241 AILSILITLSVYRSVKA-QLV----------------ELGMVQILTRILSDSR-----TQILTVEKSIKMLSIVATCSEG  298 (398)
Q Consensus       241 ~a~~aL~~Ls~~~~~~~-~~v----------------~~g~v~~Lv~lL~~~~-----~~~~~~~~al~~L~~La~~~~~  298 (398)
                      .++..+..++....... ...                -...++.+...+....     .+......+..+|..++.....
T Consensus       285 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  364 (861)
T d2bpta1         285 MTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN  364 (861)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcch
Confidence            88888877754321111 010                1124555566654211     1223555566666665542111


Q ss_pred             HHHHhhccCcHHHHH----HHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHH
Q 015939          299 RLALSEEASCAGRVV----ERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGD  374 (398)
Q Consensus       299 ~~~i~~~~g~v~~Lv----~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~  374 (398)
                              ..++.+.    ..+...+...++.|+.++..+..... ........ ...++.++..++.. ++.+|..|..
T Consensus       365 --------~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~-~~~~~~~l-~~~l~~l~~~l~d~-~~~vr~~a~~  433 (861)
T d2bpta1         365 --------HILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPD-KVQRTYYV-HQALPSILNLMNDQ-SLQVKETTAW  433 (861)
T ss_dssp             --------GGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC-HHHHHHHH-HHHHHHHHHGGGCS-CHHHHHHHHH
T ss_pred             --------hhhhhhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcc-hhhHHHHH-HHHHHHHHHHhcCc-chhhhhHHHH
Confidence                    1233333    33344677888899998888876432 22222222 23677777777655 7899999999


Q ss_pred             HHHHHhc
Q 015939          375 LVKVLGK  381 (398)
Q Consensus       375 lL~~l~~  381 (398)
                      ++..+.+
T Consensus       434 ~l~~l~~  440 (861)
T d2bpta1         434 CIGRIAD  440 (861)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            9988876

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.67  E-value=0.58  Score=40.40  Aligned_cols=184  Identities=7%  Similarity=0.052  Sum_probs=129.6

Q ss_pred             chhHHHHHHHHHHHhhhhhhhh----hhhhhcCCcHHHHHHHhhhccCCcHHHHHHHHHHHHhhhcccchHHHhhHhhhc
Q 015939          101 ENSCVDYLVKVAKFATGCEANR----RFLASYGGFVEAVFGVLNRKRRSEIAVLESAVRVLNLIVNENGVKEKLNRLILN  176 (398)
Q Consensus       101 ~~~~~~al~~L~~l~~~~~~~r----~~i~~~~g~v~~L~~lL~~~~~~~~~~~~~al~~L~~l~~~~~~~~~~~~~il~  176 (398)
                      .|.+..+......+.+.....|    +.+...+.++..|+.-.+. .+    +.-.+-..|........-    -+. +-
T Consensus        83 fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~-~e----iAl~~G~mLREcik~e~l----ak~-iL  152 (330)
T d1upka_          83 FEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYES-PE----IALNCGIMLRECIRHEPL----AKI-IL  152 (330)
T ss_dssp             HHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGS-TT----THHHHHHHHHHHHTSHHH----HHH-HH
T ss_pred             CchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCC-cc----hhhhhhHHHHHHHhhHHH----HHH-HH
Confidence            4588888877777776544444    4566665666666666554 22    223444456555554332    344 44


Q ss_pred             cCCChHHHHHHHhcCChhhHHHHHHHHHHh-hcCchh-HHHhhc-hhhHHHHHHHHhccccCHHHHHHHHHHHHHhcCCc
Q 015939          177 TYNCLPLFLEILREGNLDSKIGSIKILDSI-SLDNES-KRRVLE-TENLLSALFDYLKLAEDQALNDAILSILITLSVYR  253 (398)
Q Consensus       177 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L-~~~~~~-~~~i~~-~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~  253 (398)
                      ....+..+.+.+..++.++...|..++..| ..++.. ...+.. ..-++...-.+|.++ +--.++.++..|..+-.+.
T Consensus       153 ~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~-NYVtrRqSlKLLgelLldr  231 (330)
T d1upka_         153 WSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSE-NYVTKRQSLKLLGELLLDR  231 (330)
T ss_dssp             HSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCS-SHHHHHHHHHHHHHHHHSG
T ss_pred             ccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHhhh
Confidence            566788999999999999999999999955 555443 333332 234677778899888 8889999999999999888


Q ss_pred             chHHHHH----HcCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHH
Q 015939          254 SVKAQLV----ELGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSE  297 (398)
Q Consensus       254 ~~~~~~v----~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~  297 (398)
                      .|...|.    +..-+..++.+|+  +.+..++-.|..+......+|.
T Consensus       232 ~N~~vm~~Yvs~~~nLkl~M~LLr--d~sk~Iq~EAFhVFKvFVANpn  277 (330)
T d1upka_         232 HNFTIMTKYISKPENLKLMMNLLR--DKSRNIQFEAFHVFKVFVANPN  277 (330)
T ss_dssp             GGHHHHHHHTTCHHHHHHHHHHTT--CSCHHHHHHHHHHHHHHHHCSS
T ss_pred             hHHHHHHHHhCCHHHHHHHHHHhc--CchhhHHHHhhhHhhhhhcCCC
Confidence            8877764    3456788888995  4788999999999999877553

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.65  E-value=0.39  Score=42.46  Aligned_cols=120  Identities=15%  Similarity=0.084  Sum_probs=86.1

Q ss_pred             HcCChHHHHHHhccc---------CcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHH
Q 015939          261 ELGMVQILTRILSDS---------RTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVI  331 (398)
Q Consensus       261 ~~g~v~~Lv~lL~~~---------~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L  331 (398)
                      ..+|+..|+.+|..-         ..+....-.++.+|+.|..+..|...+..++.++..++..+.+....++..|+.+|
T Consensus        43 ~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL  122 (343)
T d2bnxa1          43 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLL  122 (343)
T ss_dssp             HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHH
Confidence            556788888877420         11345667899999999999999999998999999999999999999999999999


Q ss_pred             HHhhccCCChh----HH------HHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHh
Q 015939          332 WSMCCVYKDAR----VK------EAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLG  380 (398)
Q Consensus       332 ~~l~~~~~~~~----~~------~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~  380 (398)
                      ..+|..+..+.    +.      ....+.+-+..++..++.+.+...+-.+..++..+=
T Consensus       123 ~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li  181 (343)
T d2bnxa1         123 SALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALI  181 (343)
T ss_dssp             HHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence            99996532111    11      122345667778877776655555555544444443

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.87  E-value=1.7  Score=37.31  Aligned_cols=196  Identities=7%  Similarity=0.018  Sum_probs=140.3

Q ss_pred             cCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC-chhH----HHhhchhhHHHHHHHHhccccCHHHHHHHHHHHHHhcC
Q 015939          177 TYNCLPLFLEILREGNLDSKIGSIKILDSISLD-NESK----RRVLETENLLSALFDYLKLAEDQALNDAILSILITLSV  251 (398)
Q Consensus       177 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~-~~~~----~~i~~~~g~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~  251 (398)
                      ..+.+..|+.-|..-+.+.|..++.+..++... .+.+    +.+.....++..|++-..   +++.--.+-..|.....
T Consensus        67 ~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye---~~eiAl~~G~mLREcik  143 (330)
T d1upka_          67 NSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE---SPEIALNCGIMLRECIR  143 (330)
T ss_dssp             HHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG---STTTHHHHHHHHHHHHT
T ss_pred             HhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC---CcchhhhhhHHHHHHHh
Confidence            457788899999988999999999999988765 3333    334443455555555443   45566667777778788


Q ss_pred             CcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHH-hCCHHHHHHHhhc--cCcHHHHHHHHhccChhHHHHHH
Q 015939          252 YRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIV-ATCSEGRLALSEE--ASCAGRVVERVMKVGKTAREDAV  328 (398)
Q Consensus       252 ~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~L-a~~~~~~~~i~~~--~g~v~~Lv~~l~~~~~~~~~~a~  328 (398)
                      ++...+.+....-+..+.+.++  .++-++...|..+++.| ..++....++...  .-.+..+.++|.+++--++..++
T Consensus       144 ~e~lak~iL~s~~f~~fF~yv~--~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVtrRqSl  221 (330)
T d1upka_         144 HEPLAKIILWSEQFYDFFRYVE--MSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSL  221 (330)
T ss_dssp             SHHHHHHHHHSGGGGHHHHHTT--CSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHH
T ss_pred             hHHHHHHHHccHHHHHHHHHHc--CCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHHHHHHH
Confidence            8888888888888999999994  47889999999999996 4577766666532  13566777888889999999999


Q ss_pred             HHHHHhhccCCChhHHHHHHh----cCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          329 VVIWSMCCVYKDARVKEAVVN----SNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       329 ~~L~~l~~~~~~~~~~~~~~~----~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      ..|..+-..   +.+...|.+    ..-+..++.+|++. +..++-.|=.+.|.+-.
T Consensus       222 KLLgelLld---r~N~~vm~~Yvs~~~nLkl~M~LLrd~-sk~Iq~EAFhVFKvFVA  274 (330)
T d1upka_         222 KLLGELLLD---RHNFTIMTKYISKPENLKLMMNLLRDK-SRNIQFEAFHVFKVFVA  274 (330)
T ss_dssp             HHHHHHHHS---GGGHHHHHHHTTCHHHHHHHHHHTTCS-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhh---hhHHHHHHHHhCCHHHHHHHHHHhcCc-hhhHHHHhhhHhhhhhc
Confidence            999998764   333333322    33355555555655 67777777777766644

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=93.37  E-value=1.3  Score=38.88  Aligned_cols=183  Identities=16%  Similarity=0.190  Sum_probs=112.1

Q ss_pred             HHHHHHHcCCCCchhHHHHHHHHHHHhhhhhh-hhhhhhhcCCcHHHHHHHhhhc--------cCCcHHHHHHHHHHHHh
Q 015939           89 VWIEKIKSENESENSCVDYLVKVAKFATGCEA-NRRFLASYGGFVEAVFGVLNRK--------RRSEIAVLESAVRVLNL  159 (398)
Q Consensus        89 ~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~-~r~~i~~~~g~v~~L~~lL~~~--------~~~~~~~~~~al~~L~~  159 (398)
                      ..+..|++.... +.....+..|+--.+..+- --+.+ .. +|+..|+.+|...        ...+......++++|..
T Consensus         6 ~yv~~l~~~~~~-~~~~~~L~sL~v~Lrt~~~sWv~~F-~~-~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLka   82 (343)
T d2bnxa1           6 MYIQELRSGLRD-MHLLSCLESLRVSLNNNPVSWVQTF-GA-EGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKA   82 (343)
T ss_dssp             HHHHHHTSCCCH-HHHHHHHHHHHHHHHHSCHHHHHHH-HH-HHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCCc-cHHHHHHHHHHHHHhcCCchHHHHH-Hh-ccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHH
Confidence            345666554331 2223344444433333332 22334 35 6788888888531        11134455788889988


Q ss_pred             hhcccchHHHhhHhhhccCCChHHHHHHHhcCChhhHHHHHHHHHHhhcC---chhHHHh----------hchhhHHHHH
Q 015939          160 IVNENGVKEKLNRLILNTYNCLPLFLEILREGNLDSKIGSIKILDSISLD---NESKRRV----------LETENLLSAL  226 (398)
Q Consensus       160 l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L~~~---~~~~~~i----------~~~~g~i~~L  226 (398)
                      +.....+    ...++...+++..++..|.+....++..|..+|..++..   ++....+          .+ .+-+.++
T Consensus        83 lmn~~~G----~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~~~g~~~vL~Al~~~~~~~e-~~RF~~l  157 (343)
T d2bnxa1          83 FMNNKFG----IKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE-VERFQPL  157 (343)
T ss_dssp             HTSSHHH----HHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHT-SCTTHHH
T ss_pred             HhccHHH----HHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHhcC-CCcHHHH
Confidence            8876655    455578899999999999999999999999999988743   1212221          22 3456788


Q ss_pred             HHHhccccCHHHHHHHHHHHHHhcCCcc-------hHHHHHHcCChHHHHHHhcccCcchhh
Q 015939          227 FDYLKLAEDQALNDAILSILITLSVYRS-------VKAQLVELGMVQILTRILSDSRTQILT  281 (398)
Q Consensus       227 v~lL~~~~~~~~~~~a~~aL~~Ls~~~~-------~~~~~v~~g~v~~Lv~lL~~~~~~~~~  281 (398)
                      +..|++..+.+.+.+++..+-.|..+.+       -|..+..+| +..+++-|+. ..++.+
T Consensus       158 v~~l~~~~~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~~~G-l~~il~~l~~-~~~~~L  217 (343)
T d2bnxa1         158 LDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLG-LHQVLQELRE-IENEDM  217 (343)
T ss_dssp             HHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT-HHHHHHHHTT-CCCHHH
T ss_pred             HHHHhccccHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHCC-hHHHHHHHHc-cCChHH
Confidence            8888877667777777777777754432       234445665 5556666653 334443

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=91.65  E-value=0.063  Score=45.03  Aligned_cols=61  Identities=8%  Similarity=-0.058  Sum_probs=30.1

Q ss_pred             HHHHHHhccccCHHHHHHHHHH-----HHHhcCCc--chHHHHHHcCChHHHHHHhcccCcchhhHHHHHH
Q 015939          224 SALFDYLKLAEDQALNDAILSI-----LITLSVYR--SVKAQLVELGMVQILTRILSDSRTQILTVEKSIK  287 (398)
Q Consensus       224 ~~Lv~lL~~~~~~~~~~~a~~a-----L~~Ls~~~--~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~  287 (398)
                      +.|..+++++ +..++..++..     |..|..+.  +.+..++..-+.+.|..+++  +.++.+...++.
T Consensus       117 ~~L~~Ll~D~-d~~VR~~aa~~~~~~~L~~L~~D~d~~VR~~aA~~~~~~~L~~l~~--D~d~~VR~~aa~  184 (233)
T d1lrva_         117 EQLEQMAADR-DYLVRAYVVQRIPPGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQ--DPEPEVRRIVAS  184 (233)
T ss_dssp             GGGGGGTTCS-SHHHHHHHHHHSCGGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTT--CSSHHHHHHHHH
T ss_pred             HHHHHHhcCC-CHHHHHHHHhccchhHHHHHhcCCCHHHHHHHHHhcCHHHHHHHcc--CCCHHHHHHHHH
Confidence            3455556665 66666665543     22222222  23333344344555666663  356666665553

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=90.14  E-value=0.081  Score=44.31  Aligned_cols=144  Identities=14%  Similarity=0.070  Sum_probs=75.1

Q ss_pred             HHHHHHhccccCHHHHHHHHHHH-----HHhcCCcc--hHHHHHHcCChHHHHHHhcccCcchhhHHHHHHH-----HHH
Q 015939          224 SALFDYLKLAEDQALNDAILSIL-----ITLSVYRS--VKAQLVELGMVQILTRILSDSRTQILTVEKSIKM-----LSI  291 (398)
Q Consensus       224 ~~Lv~lL~~~~~~~~~~~a~~aL-----~~Ls~~~~--~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~-----L~~  291 (398)
                      ..|..+++++ ++.++..++..|     ..|..+++  .+..+++.=..+.|..++.  +++..+...+...     |..
T Consensus        69 ~~L~~Ll~D~-d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~--D~d~~VR~~aa~~~~~~~L~~  145 (233)
T d1lrva_          69 EALTPLIRDS-DEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAA--DRDYLVRAYVVQRIPPGRLFR  145 (233)
T ss_dssp             GGGGGGTTCS-SHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTT--CSSHHHHHHHHHHSCGGGGGG
T ss_pred             HHHHHHhcCC-CHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhc--CCCHHHHHHHHhccchhHHHH
Confidence            3444555555 555555554332     22222221  2222333223455566663  3555665554432     333


Q ss_pred             HhC--CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHH-----HHhhccCCChhHHHHHHhcCCHHHHHHHHhhcC
Q 015939          292 VAT--CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVI-----WSMCCVYKDARVKEAVVNSNGLTKLLLVMQSEN  364 (398)
Q Consensus       292 La~--~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L-----~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~  364 (398)
                      |..  +++.|..+... -..+.|..++.+.++.++..++..|     ..+... ++..++..+++... +.++..|. +.
T Consensus       146 L~~D~d~~VR~~aA~~-~~~~~L~~l~~D~d~~VR~~aa~~L~~~~L~~l~~D-~d~~VR~aaae~~~-~~ll~~L~-D~  221 (233)
T d1lrva_         146 FMRDEDRQVRKLVAKR-LPEESLGLMTQDPEPEVRRIVASRLRGDDLLELLHD-PDWTVRLAAVEHAS-LEALRELD-EP  221 (233)
T ss_dssp             TTTCSCHHHHHHHHHH-SCGGGGGGSTTCSSHHHHHHHHHHCCGGGGGGGGGC-SSHHHHHHHHHHSC-HHHHHHCC-CC
T ss_pred             HhcCCCHHHHHHHHHh-cCHHHHHHHccCCCHHHHHHHHHhcCcHHHHHHHhC-CCHHHHHHHHHhcc-HHHHHHhC-CC
Confidence            333  34555555532 3456667777778888888877543     234433 34556666666543 45677775 44


Q ss_pred             cHHHHHHHHH
Q 015939          365 EGIVRKMCGD  374 (398)
Q Consensus       365 ~~~~k~~A~~  374 (398)
                      ++.+|+.|..
T Consensus       222 d~~VR~aA~~  231 (233)
T d1lrva_         222 DPEVRLAIAG  231 (233)
T ss_dssp             CHHHHHHHHC
T ss_pred             CHHHHHHHHH
Confidence            8888888753

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=89.61  E-value=5.8  Score=34.28  Aligned_cols=208  Identities=13%  Similarity=0.105  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHHcCCCCchhHHHHHHHHHHHhhhhhhhhhh----hhhcCCc---HHHHHHHhhhccCCcHHHHHHHHHH
Q 015939           84 EQEVRVWIEKIKSENESENSCVDYLVKVAKFATGCEANRRF----LASYGGF---VEAVFGVLNRKRRSEIAVLESAVRV  156 (398)
Q Consensus        84 ~~~i~~l~~~l~~~~~~~~~~~~al~~L~~l~~~~~~~r~~----i~~~~g~---v~~L~~lL~~~~~~~~~~~~~al~~  156 (398)
                      +..+..+++.|..-+.+      .+..+..-.+..+..|..    +... |.   +..+..++.+ ..-..   ..|...
T Consensus        42 ~~kF~~Lv~~lR~~~~e------~l~~v~~~~~~~~~~r~~~lDal~~~-GT~~a~~~i~~~I~~-~~ls~---~ea~~~  110 (336)
T d1lsha1          42 PAKFLRLTAFLRNVDAG------VLQSIWHKLHQQKDYRRWILDAVPAM-ATSEALLFLKRTLAS-EQLTS---AEATQI  110 (336)
T ss_dssp             HHHHHHHHHHHTTSCHH------HHHHHHHHHTTSHHHHHHHHHHHHHH-CSHHHHHHHHHHHHT-TCSCH---HHHHHH
T ss_pred             HHHHHHHHHHHHCCCHH------HHHHHHHHHhcChhHHHHHHHHHHHh-CCHHHHHHHHHHHHc-CCCCH---HHHHHH
Confidence            34566677777765542      333333333344555544    3344 44   4445666655 33222   233444


Q ss_pred             HHhhhcccchHHHhhHhhhccCCChHHHHHHHhc----CChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhc-
Q 015939          157 LNLIVNENGVKEKLNRLILNTYNCLPLFLEILRE----GNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLK-  231 (398)
Q Consensus       157 L~~l~~~~~~~~~~~~~il~~~g~i~~Lv~lL~~----~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~-  231 (398)
                      |..+......          ....+..+..++.+    .++.++..+...++.|...--....-.. ...++.+...+. 
T Consensus       111 l~~l~~~~~P----------t~~~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~~~c~~~~~~~-~~~~~~l~~~l~~  179 (336)
T d1lsha1         111 VASTLSNQQA----------TRESLSYARELLNTSFIRNRPILRKTAVLGYGSLVFRYCANTVSCP-DELLQPLHDLLSQ  179 (336)
T ss_dssp             HHHHHHTCCC----------CHHHHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHHHTTCSSCC-GGGTHHHHHHHHH
T ss_pred             HHHHhccCCC----------CHHHHHHHHHHHcCcccccchhHHHHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHH
Confidence            4444332111          11235666677764    4677777888888777543100000011 233444444443 


Q ss_pred             ---cccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhccc-----CcchhhHHHHHHHHHHHhCC-HHHHHHH
Q 015939          232 ---LAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDS-----RTQILTVEKSIKMLSIVATC-SEGRLAL  302 (398)
Q Consensus       232 ---~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~-----~~~~~~~~~al~~L~~La~~-~~~~~~i  302 (398)
                         .+ +.+....++++|.|+-.          .+.++.|..++.+.     ..+..++..|+.+|++++.. +...+.+
T Consensus       180 ~~~~~-~~~~~~~~LkaLGN~g~----------p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~v~~~  248 (336)
T d1lsha1         180 SSDRA-KEEEIVLALKALGNAGQ----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRKVQEI  248 (336)
T ss_dssp             HHHTT-CHHHHHHHHHHHHHHTC----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHHHHHH
T ss_pred             hhccc-chHHHHHHHHHHhccCC----------HhHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHHHHHH
Confidence               44 56667788999999742          13567777777421     12456888999999998763 3222222


Q ss_pred             hhccCcHHHHHHHHhc--cChhHHHHHHHHHHH
Q 015939          303 SEEASCAGRVVERVMK--VGKTAREDAVVVIWS  333 (398)
Q Consensus       303 ~~~~g~v~~Lv~~l~~--~~~~~~~~a~~~L~~  333 (398)
                               +..++.+  .+.+++-.|..+|..
T Consensus       249 ---------l~~i~~n~~e~~EvRiaA~~~lm~  272 (336)
T d1lsha1         249 ---------VLPIFLNVAIKSELRIRSCIVFFE  272 (336)
T ss_dssp             ---------HHHHHHCTTSCHHHHHHHHHHHHH
T ss_pred             ---------HHHHHcCCCCChHHHHHHHHHHHh
Confidence                     2334433  466677777766644

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=88.79  E-value=4.6  Score=34.97  Aligned_cols=129  Identities=9%  Similarity=0.040  Sum_probs=81.4

Q ss_pred             HhcCChhhHHHHHHHHHHhhcCchhHHHhhchhhHHHHHHHHhccc------cCHHHHHHHHHHHHHhcCCcchHHHHHH
Q 015939          188 LREGNLDSKIGSIKILDSISLDNESKRRVLETENLLSALFDYLKLA------EDQALNDAILSILITLSVYRSVKAQLVE  261 (398)
Q Consensus       188 L~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~~g~i~~Lv~lL~~~------~~~~~~~~a~~aL~~Ls~~~~~~~~~v~  261 (398)
                      .+.++.+-+..+..+|+|+..           .+.++.|..++.+.      .+..++.+|+.+|.++.......     
T Consensus       181 ~~~~~~~~~~~~LkaLGN~g~-----------p~~i~~l~~~l~~~~~~~~~~~~~vR~aAi~Alr~~~~~~p~~-----  244 (336)
T d1lsha1         181 SDRAKEEEIVLALKALGNAGQ-----------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDPRK-----  244 (336)
T ss_dssp             HHTTCHHHHHHHHHHHHHHTC-----------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCHHH-----
T ss_pred             hcccchHHHHHHHHHHhccCC-----------HhHHHHHHHHhcccccccccccHHHHHHHHHHHHHhhhcCcHH-----
Confidence            345555555566777777653           34567777777542      24678999999999987654322     


Q ss_pred             cCChHHHHHHhcccCcchhhHHHHHHHHHHHhCCHHHHHHHhhccCcHHHHHHHHhc-cChhHHHHHHHHHHHhhccCCC
Q 015939          262 LGMVQILTRILSDSRTQILTVEKSIKMLSIVATCSEGRLALSEEASCAGRVVERVMK-VGKTAREDAVVVIWSMCCVYKD  340 (398)
Q Consensus       262 ~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~~~~~~~~i~~~~g~v~~Lv~~l~~-~~~~~~~~a~~~L~~l~~~~~~  340 (398)
                        +.+.+..+..+...+.+++..|..+|..---....          +..++..+.. .+..+.......|.+++... +
T Consensus       245 --v~~~l~~i~~n~~e~~EvRiaA~~~lm~t~P~~~~----------l~~i~~~l~~E~~~QV~sfv~S~l~~la~s~-~  311 (336)
T d1lsha1         245 --VQEIVLPIFLNVAIKSELRIRSCIVFFESKPSVAL----------VSMVAVRLRREPNLQVASFVYSQMRSLSRSS-N  311 (336)
T ss_dssp             --HHHHHHHHHHCTTSCHHHHHHHHHHHHHTCCCHHH----------HHHHHHHHTTCSCHHHHHHHHHHHHHHTTCC-S
T ss_pred             --HHHHHHHHHcCCCCChHHHHHHHHHHHhcCCCHHH----------HHHHHHHHHhCcHHHHHHHHHHHHHHHHhCC-C
Confidence              33567777765667888888888777553222222          2334445543 67778888888888888753 2


Q ss_pred             hhHHH
Q 015939          341 ARVKE  345 (398)
Q Consensus       341 ~~~~~  345 (398)
                      +....
T Consensus       312 P~~~~  316 (336)
T d1lsha1         312 PEFRD  316 (336)
T ss_dssp             GGGHH
T ss_pred             cchHH
Confidence            44433

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=87.00  E-value=0.59  Score=35.58  Aligned_cols=73  Identities=15%  Similarity=0.114  Sum_probs=60.4

Q ss_pred             cHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHHHHHHHHHHHhc
Q 015939          308 CAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       308 ~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~~A~~lL~~l~~  381 (398)
                      ++..|.+.|..+++.++-.|+.+|-.+..+.| .....++...+.+..|..++.......+|++...+++..+.
T Consensus        43 a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG-~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  115 (145)
T d1dvpa1          43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCG-APVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAY  115 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSH-HHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHccc-hHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence            34456677778899999999999999887654 56777888888899998888877677899999999998877

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.36  E-value=1.6  Score=32.97  Aligned_cols=72  Identities=13%  Similarity=0.069  Sum_probs=58.5

Q ss_pred             HHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhh-----cCcHHHHHHHHHHHHHHhc
Q 015939          309 AGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQS-----ENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       309 v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~-----~~~~~~k~~A~~lL~~l~~  381 (398)
                      +..|-+-|..+++.++-.|+.+|..+..+.| .....++...+.+..|+.++..     .....+|++...+++.-+.
T Consensus        47 ~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG-~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~  123 (145)
T d1ujka_          47 TRLLAHKIQSPQEWEAIQALTVLETCMKSCG-KRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV  123 (145)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHTSCC-HHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh-HHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHH
Confidence            4456677777899999999999988888754 7888889999999999999852     3456899999988887665

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=81.98  E-value=4.1  Score=40.00  Aligned_cols=137  Identities=11%  Similarity=0.045  Sum_probs=92.1

Q ss_pred             HHHHHHHhccccCHHHHHHHHHHHHHhcCCcchHHHHHHcCChHHHHHHhcccCcchhhHHHHHHHHHHHhC--------
Q 015939          223 LSALFDYLKLAEDQALNDAILSILITLSVYRSVKAQLVELGMVQILTRILSDSRTQILTVEKSIKMLSIVAT--------  294 (398)
Q Consensus       223 i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~~v~~g~v~~Lv~lL~~~~~~~~~~~~al~~L~~La~--------  294 (398)
                      ++.|..+|....+++.++.|-.-|..+..++         |....|+.++.+.+.+..++..|+-.|+|...        
T Consensus         4 ~~~l~~ll~~s~~~~~~k~Ae~~L~~~~~~p---------~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~~~   74 (959)
T d1wa5c_           4 LETVAKFLAESVIASTAKTSERNLRQLETQD---------GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDENG   74 (959)
T ss_dssp             HHHHHHHHHHTTSGGGHHHHHHHHHHHHTST---------THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCSSS
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHHHcCC---------CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccc
Confidence            4567777776557888999999998887664         45667788886544566788889999988763        


Q ss_pred             ----CHHHHHHHhhccCcHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhhcCcHHHHH
Q 015939          295 ----CSEGRLALSEEASCAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQSENEGIVRK  370 (398)
Q Consensus       295 ----~~~~~~~i~~~~g~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~~~~~~~k~  370 (398)
                          .++.|..+..      .++..+...+...+...+.++..++....-.++      -+.++.|+..++++ +...+.
T Consensus        75 ~~~i~~e~k~~Ik~------~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~W------p~ll~~l~~~l~s~-~~~~~~  141 (959)
T d1wa5c_          75 NHLLPANNVELIKK------EIVPLMISLPNNLQVQIGEAISSIADSDFPDRW------PTLLSDLASRLSND-DMVTNK  141 (959)
T ss_dssp             CBSSCHHHHHHHHH------HHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTTC------TTHHHHHHTTCCSS-CTTHHH
T ss_pred             cCCCCHHHHHHHHH------HHHHHHhCCcHHHHHHHHHHHHHHHHHhCcccc------HHHHHHHHHHhCCC-CHHHHH
Confidence                2455555552      355566667888888888888888764110111      24566677777665 566666


Q ss_pred             HHHHHHHHHhc
Q 015939          371 MCGDLVKVLGK  381 (398)
Q Consensus       371 ~A~~lL~~l~~  381 (398)
                      .+..+|..+-+
T Consensus       142 ~~L~~l~~i~k  152 (959)
T d1wa5c_         142 GVLTVAHSIFK  152 (959)
T ss_dssp             HHHHHHHHHHG
T ss_pred             HHHHHHHHHHH
Confidence            77666665544

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.00  E-value=1.3  Score=33.53  Aligned_cols=73  Identities=11%  Similarity=0.035  Sum_probs=58.6

Q ss_pred             cHHHHHHHHhccChhHHHHHHHHHHHhhccCCChhHHHHHHhcCCHHHHHHHHhh-----cCcHHHHHHHHHHHHHHhc
Q 015939          308 CAGRVVERVMKVGKTAREDAVVVIWSMCCVYKDARVKEAVVNSNGLTKLLLVMQS-----ENEGIVRKMCGDLVKVLGK  381 (398)
Q Consensus       308 ~v~~Lv~~l~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~g~~~~Ll~~l~~-----~~~~~~k~~A~~lL~~l~~  381 (398)
                      ++..|-+-|..+++.++-.|+.+|..+..+.| .....++.....+..|+.++..     ..+..+|+++..+++..+.
T Consensus        39 a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG-~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~  116 (143)
T d1mhqa_          39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCG-EKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV  116 (143)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSC-HHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC-HHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            34457777788999999999999988887754 6788888888888888888853     3467899999999988776

>d1weoa_ g.44.1.1 (A:) Cellulose synthase A catalytic subunit 7, IRX3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Cellulose synthase A catalytic subunit 7, IRX3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=80.36  E-value=0.68  Score=31.15  Aligned_cols=46  Identities=17%  Similarity=0.176  Sum_probs=37.0

Q ss_pred             ccccCccccC-----CCceec--CCCcccchhHHHHHHhcCCCCCCcccccCC
Q 015939           14 FRCPISLDVM-----KSPVSL--CTGVTYDRSSIQHWLESGHDTCPATMQILS   59 (398)
Q Consensus        14 ~~Cpi~~~~~-----~dPv~~--~~g~~~~r~~i~~~~~~~~~~CP~~~~~l~   59 (398)
                      -.|-||++-.     -+|.+-  .||--.||.|.+-=.++|+..||.|+.+++
T Consensus        17 q~CqiCGd~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCkt~Yk   69 (93)
T d1weoa_          17 QFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK   69 (93)
T ss_dssp             CBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred             chhhhcccccccCCCCCEEEEecccCCccchHHHHHHHhccCccCcccCChhh
Confidence            4799998743     456554  489999999999888889999999998765