Citrus Sinensis ID: 015954

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------
Protein Sequence
MSCTHSSNPTAGFSLSFQFLSPNPKTTIPSNSTLILARNCSNPRLYLPLSKTQKRILKKNGDFVIRASVRDKNNNNGASNWVNWLPTEAFSADKVFRLISTATASPIYQFIASPSTFLHSVDARIKLVWLLALVLLPARSHILMRFGLVVFTALLSIWILPKQVWMDQLGRVSLLSGVLFIMLGLGSDGVPSLVQSRTPPSAITGLPNLPISLGGYSYLIMKLGPLQFTRKGLSVASTAACLTFTIFQSSSLCLATTTPEQLAFALRWFMLPLTYIGVPVAEIVLTLLLSLRFISLVFDEVRNVALGIVSRRINWRQLTMLETIDIFASYIRRIFKNIFGHAEQISQAMIVRGFRGDSSTHKIYSFSNSSIGVADFVSLFCLVGVVGAALVSDRFLL
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHccccEEEEcccccccccccccccccccccccccccHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEEEEEcEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccccccccccEEEEEEcccccccccccccccccccccccccccccccccccccHHHHcccccEEEEEEEEccccccccccHHHHcccccccHHHHHHHHHccccccccccccccccEEEcccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEcccccccccccccccccccccccEEEEEEccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEHHHHEccHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mscthssnptagfslsfqflspnpkttipsnstlilarncsnprlylplskTQKRILKKNGDFVIRASVrdknnnngasnwvnwlpteafsaDKVFRLISTataspiyqfiaspstflhSVDARIKLVWLLALVLLPARSHILMRFGLVVFTALLSIWILPKQVWMDQLGRVSLLSGVLFIMLGlgsdgvpslvqsrtppsaitglpnlpislggYSYLIMKLgplqftrkglsvasTAACLTFTIFqssslclattTPEQLAFALRWFMLPLTYIGVPVAEIVLTLLLSLRFISLVFDEVRNVALGIVSRRINWRQLTMLETIDIFASYIRRIFKNIFGHAEQISQAMIVrgfrgdssthkiysfsnssigvaDFVSLFCLVGVVGaalvsdrfll
Flexible Loop (DISEMBL)
mscthssnptagFSLSFQFLSPNPKTTIPSNSTLILARNCSNPRLYlplsktqkriLKKNGDFVIRasvrdknnnngasnwvnwLPTEAFSADKVFRLISTATASPIYQFIASPSTFLHSVDARIKLVWLLALVLLPARSHILMRFGLVVFTALLSIWILPKQVWMDQLGRVSLLSGVLFIMLGLGSDGVPSLVQSRTPPSAITGLPNLPISLGGYSYLIMKLGPLQFTRKGLSVASTAACLTFTIFQSSSLCLATTTPEQLAFALRWFMLPLTYIGVPVAEIVLTLLLSLRFISLVFDEVRNVALgivsrrinwrqltMLETIDIFASYIRRIFKNIFGHAEQISQAMIVRGFRGDSSTHKIYSFSNSSIGVADFVSLFCLVGVVGAALVSDRFLL
Low Complexity Region (SEG)
MSCTHSSNPTAGFSLSFQFLSPNPKTTIPSNSTLILARNCSNPRLYLPLSKTQKRILKKNGDFVIRASVRDKnnnngasnwvnWLPTEAFSADKVFRLISTATASPIYQFIASPSTFLHSVDARIKlvwllalvllPARSHILMRFGLVVFTALLSIWILPKQVWMDQLGRVSLLSGVLFIMLGLGSDGVPSLVQSRTPPSAITGLPNLPISLGGYSYLIMKLGPLQFTRKGLSVASTAACLTFTIFQSSSLCLATTTPEQLAFALRWFMLPLTYIGVPVAEivltlllslrfislvfDEVRNVALGIVSRRINWRQLTMLETIDIFASYIRRIFKNIFGHAEQISQAMIVRGFRGDSSTHKIYSFSNSSIGVADFVSLFCLVGVVGAALVSDRFLL
Disordered region (IsUnstruct)
*******************************STLILARNCSNPRLYLPLSKTQKRILKKNGDFVIRASVRDKNNNNGASNWVNWLPTEAFSADKVFRLISTATASPIYQFIASPSTFLHSVDARIKLVWLLALVLLPARSHILMRFGLVVFTALLSIWILPKQVWMDQLGRVSLLSGVLFIMLGLGSDGVPSLVQ*****SAITGLPNLPISLGGYSYLIMKLGPLQFTRKGLSVASTAACLTFTIFQSSSLCLATTTPEQLAFALRWFMLPLTYIGVPVAEIVLTLLLSLRFISLVFDEVRNVALGIVSRRINWRQLTMLETIDIFASYIRRIFKNIFGHAEQISQAMIVRGFRGDSSTHKIYSFSNSSIGVADFVSLFCLVGVVGAALVSDRF**
Disordered Region (DISOPRED)
*********TAGFSLSF***************TLILARNCSNPRLYLPLS******LKK*GD*************************************STATASPIYQFIASPSTFLHSVDARIKLVWLLALVLLPARSHILMRFGLVVFTALLSIWILPKQVWMDQLGRVSLLSGVLFIMLGLGSDGVPSLVQSRTPPSAITGLPNLPISLGGYSYLIMKLGPLQFTRKGLSVASTAACLTFTIFQSSSLCLATTTPEQLAFALRWFMLPLTYIGVPVAEIVLTLLLSLRFISLVFDEVRNVALGIVSRRINWRQLTMLETIDIFASYIRRIFKNIFGHAEQISQAMIVRGFRGDSSTHKIYSFSNSSIGVADFVSLFCLVGVVGAALVSDRFLL
Disordered Region (DISEMBL)
*********TAGFSLSFQFLSPNPKTTIPSNSTLILARNCSNPRLYLPLSKTQKRILKKNGDFVIRASVRDKNNNNGASNWVNWLPTEAFSADKVFRLISTATASPIYQFIASPSTFLHSVDARIKLVWLLALVLLPARSHILMRFGLVVFTALLSIWILPKQVWMDQLGRVSLLSGVLFIMLGLGSDGVPSLVQSRTPPSAITGLPNLPISLGGYSYLIMKLGPLQFTRKGLSVASTAACLTFTIFQSSSLCLATTTPEQLAFALRWFMLPLTYIGVPVAEIVLTLLLSLRFISLVFDEVRNVALGIVSRRINWRQLTMLETIDIFASYIRRIFKNIFGHAEQISQAMIVRGFRGDSSTHKIYSFSNSSIGVADFVSLFCLVGVVGAALVSDRFLL
Disordered Region (DISPRO)
****HSSNPTAGFSLSFQFLSPNPKTTIPSNSTLILARNCSNPRLYLPLSKTQKRILKKNGDFVIRASVRDKNNNNGASNWVNWLPTEAFSADKVFRLISTATASPIYQFIASPSTFLHSVDARIKLVWLLALVLLPARSHILMRFGLVVFTALLSIWILPKQVWMDQLGRVSLLSGVLFIMLGLGSDGVPSLVQSRTPPSAITGLPNLPISLGGYSYLIMKLGPLQFTRKGLSVASTAACLTFTIFQSSSLCLATTTPEQLAFALRWFMLPLTYIGVPVAEIVLTLLLSLRFISLVFDEVRNVALGIVSRRINWRQLTMLETIDIFASYIRRIFKNIFGHAEQISQAMIVRGFRGDSSTHKIYSFSNSSIGVADFVSLFCLVGVVGAALVSDRFLL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHoooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSCTHSSNPTAGFSLSFQFLSPNPKTTIPSNSTLILARNCSNPRLYLPLSKTQKRILKKNGDFVIRASVRDKNNNNGASNWVNWLPTEAFSADKVFRLISTATASPIYQFIASPSTFLHSVDARIKLVWLLALVLLPARSHILMRFGLVVFTALLSIWILPKQVWMDQLGRVSLLSGVLFIMLGLGSDGVPSLVQSRTPPSAITGLPNLPISLGGYSYLIMKLGPLQFTRKGLSVASTAACLTFTIFQSSSLCLATTTPEQLAFALRWFMLPLTYIGVPVAEIVLTLLLSLRFISLVFDEVRNVALGIVSRRINWRQLTMLETIDIFASYIRRIFKNIFGHAEQISQAMIVRGFRGDSSTHKIYSFSNSSIGVADFVSLFCLVGVVGAALVSDRFLL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	397	2.2.26 [Sep-21-2011]
Q944H2	391	Protein ABCI12, chloropla	yes	no	0.979	0.994	0.659	1e-140
Q8YZH6	308	Ycf92-like protein OS=Nos	yes	no	0.715	0.922	0.305	8e-31
B8I813	267	Energy-coupling factor tr	yes	no	0.352	0.524	0.307	2e-09
D9RZP4	265	Energy-coupling factor tr	yes	no	0.438	0.656	0.219	9e-08
A5N4S9	270	Energy-coupling factor tr	yes	no	0.634	0.933	0.253	9e-08
D8IIP4	267	Energy-coupling factor tr	yes	no	0.375	0.558	0.278	1e-07
D6XVS2	268	Energy-coupling factor tr	yes	no	0.370	0.548	0.258	2e-07
D3FRP0	266	Energy-coupling factor tr	yes	no	0.362	0.541	0.256	2e-07
A8YXN4	277	Energy-coupling factor tr	yes	no	0.350	0.501	0.302	2e-07
Q8G838	780	Putative ABC transporter	yes	no	0.614	0.312	0.258	3e-07

>sp|Q944H2|AB12I_ARATH Protein ABCI12, chloroplastic OS=Arabidopsis thaliana GN=ABCI12 PE=1 SV=1

 Score =  497 bits (1280), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 263/399 (65%), Positives = 322/399 (80%), Gaps = 10/399 (2%)

Query: 1   MSCTHSSNPTAGFSLSFQFLSPNPKTTIPSNSTLILARNCSNPRLYLPL--SKTQKRILK 58
           M+ ++ +NPT   +++       PK  I   ++ I  RN +NP+L  PL  ++T    L 
Sbjct: 1   MNHSNLANPTVSLTVTLI-----PKHPIRHLTSPIPNRNFTNPKLLFPLRLNETPSSSLA 55

Query: 59  KNGDFVIRASVRDKNNNNGASNWVNWLPTEAFSADKVFRLISTATASPIYQFIASPSTFL 118
               F++RA+V D +   G  NWVN LP     A+ VFRLIS+AT SPI QFI+SP TFL
Sbjct: 56  AKRVFIVRATV-DGDGKTG--NWVNRLPIPGLGAENVFRLISSATGSPIGQFISSPVTFL 112

Query: 119 HSVDARIKLVWLLALVLLPARSHILMRFGLVVFTALLSIWILPKQVWMDQLGRVSLLSGV 178
           HSVD RIKLVWLL LV+LPAR+++++R GLV+ TALLSI +LP+QVW+DQL RVSLLSG+
Sbjct: 113 HSVDPRIKLVWLLTLVVLPARANLVVRLGLVLCTALLSILVLPRQVWIDQLARVSLLSGI 172

Query: 179 LFIMLGLGSDGVPSLVQSRTPPSAITGLPNLPISLGGYSYLIMKLGPLQFTRKGLSVAST 238
           LFI LGLGSDG P ++QSRTPPS+IT LPNLP+SL GYSY+++KLGPLQFTRKGLSV ST
Sbjct: 173 LFITLGLGSDGAPPMLQSRTPPSSITSLPNLPMSLSGYSYMLLKLGPLQFTRKGLSVGST 232

Query: 239 AACLTFTIFQSSSLCLATTTPEQLAFALRWFMLPLTYIGVPVAEIVLTLLLSLRFISLVF 298
           AACLTF IFQS+S+CLATTTPEQLA ALRWF+ PLTYIGVPV+EI+LTLLLSLRFI+LVF
Sbjct: 233 AACLTFIIFQSASICLATTTPEQLALALRWFLFPLTYIGVPVSEIILTLLLSLRFINLVF 292

Query: 299 DEVRNVALGIVSRRINWRQLTMLETIDIFASYIRRIFKNIFGHAEQISQAMIVRGFRGDS 358
           DEVR+V+LGIVSRR+NW+QLT+LET+DIFAS+IRRIFKNIF HAEQISQAMIVRGFRG+S
Sbjct: 293 DEVRSVSLGIVSRRVNWQQLTVLETLDIFASFIRRIFKNIFRHAEQISQAMIVRGFRGES 352

Query: 359 STHKIYSFSNSSIGVADFVSLFCLVGVVGAALVSDRFLL 397
           S+HKIY FS SS   ADF S+ CL+GV+  AL+S+ FL+
Sbjct: 353 SSHKIYFFSGSSNKFADFASVLCLIGVISTALLSEYFLV 391

Arabidopsis thaliana (taxid: 3702)

>sp|Q8YZH6|YC92L_NOSS1 Ycf92-like protein OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr0484 PE=3 SV=1

 Score =  135 bits (339), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 91/298 (30%), Positives = 161/298 (54%), Gaps = 14/298 (4%)

Query: 106 PIYQFIASPSTFLHSVDARIKLVWLLALVLLPARSHILMRFGLVVFTALLS-IWILPKQV 164
           P+  ++  P T+LH +D R+K +WL++ +   + ++ L R  LV    L + I  +P++V
Sbjct: 8   PLGLYLEQPQTWLHKLDPRVKFIWLMSFLTSYSFANNLWRILLVALLILFTLIARIPRRV 67

Query: 165 WMDQLGRVSLLSGVLFIMLGLGSDGVPSLVQSRTP--PSAITGLPNLPISLGG------- 215
           W  Q+G +  LS  +  +  +  DG+    QSR P  P  +T   N   S          
Sbjct: 68  WQQQMGWLLTLSFFVLAIAAISPDGLGVDYQSRLPTNPQVLTQSANTNNSATATEQLKSS 127

Query: 216 --YSYLIMKLGPLQFTRKGLSVASTAACLTFTIFQSSSLCLATTTPEQLAFALRWFMLPL 273
             Y+Y++   GP++ TR+ L +A   + + FT+  S++L L TT PE++   +   M PL
Sbjct: 128 KSYTYVLFHKGPVKVTRRSLDLAVRISTIIFTVIYSTNLYLLTTAPEEITAGVESLMQPL 187

Query: 274 TYIGVPVAEIVLTLLLSLRFISLVFDEVRNVALGIVSRRINWRQLTMLETIDIFASYIRR 333
               +PV EI LTL LSLRFI LV +EV+N+   +++R INW++L +   + ++     R
Sbjct: 188 RRFKIPVTEITLTLTLSLRFIPLVLEEVQNLVRSVMTRAINWKKLGLKGAVKVWMIVAER 247

Query: 334 IFKNIFGHAEQISQAMIVRGFRGDSSTHKIYSFSNSSIGVADFVSLFCLVGVVGAALV 391
           + +N+   A Q++ AM+VRGF   +  H++  + +  + + D++++  L    G  +V
Sbjct: 248 LLENLLLRASQMASAMMVRGFTSPNE-HRV-PWHDLRLKLRDWLAIASLTIFWGIRVV 303

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|B8I813|ECFT_CLOCE Energy-coupling factor transporter transmembrane protein EcfT OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=ecfT PE=3 SV=1

 Score = 64.3 bits (155), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 43/140 (30%), Positives = 70/140 (50%)

Query: 224 GPLQFTRKGLSVASTAACLTFTIFQSSSLCLATTTPEQLAFALRWFMLPLTYIGVPVAEI 283
           G L  T +G++VA   A   F +  ++SL   TTTP  L  A+   + PL  I VPV EI
Sbjct: 97  GFLSITYEGINVAIKMAIRLFLLIITASLLTYTTTPIALTDAIENLLAPLKRIKVPVHEI 156

Query: 284 VLTLLLSLRFISLVFDEVRNVALGIVSRRINWRQLTMLETIDIFASYIRRIFKNIFGHAE 343
            + + ++LRFI  + DE   +     SR  ++    M+E    F   +  +F + F  A+
Sbjct: 157 AMMMTIALRFIPTLLDETDKIIKAQSSRGADFDSGNMIERAKSFIPVLIPLFISAFRRAD 216

Query: 344 QISQAMIVRGFRGDSSTHKI 363
           +++ AM  R +RG     ++
Sbjct: 217 ELATAMEARCYRGSEGRTRM 236

Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.

Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) (taxid: 394503)

>sp|D9RZP4|ECFT_THEOJ Energy-coupling factor transporter transmembrane protein EcfT OS=Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) GN=ecfT PE=3 SV=1

 Score = 58.5 bits (140), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 39/178 (21%), Positives = 82/178 (46%), Gaps = 4/178 (2%)

Query: 219 LIMKLGPLQFTRKGLSVASTAACLTFTIFQSSSLCLATTTPEQLAFALRWFMLPLTYIGV 278
           +I ++GPL  T +GL   +        +   +SL   TT+P  L   +   + P   +GV
Sbjct: 91  VIYEIGPLDITYEGLYQGTFMVLRLIMLIVGTSLLTLTTSPIALTDGIESLLKPFRRVGV 150

Query: 279 PVAEIVLTLLLSLRFISLVFDEVRNVALGIVSRRINWRQLTMLETIDIFASYIRRIFKNI 338
           P  E+ + + ++LRFI  + +E   +    ++R  ++    +++        +  +F N 
Sbjct: 151 PAHELAMMMTIALRFIPTLMEETDKIMKAQMARGADFASGNVVQRARSLVPLLVPLFINA 210

Query: 339 FGHAEQISQAMIVRGFRGDSSTHKIYSFSNSSIGVADFVSLFCLVGVVGAALVSDRFL 396
           F  A+ ++ AM  R +RG  +  ++     +S  +A F++     G++    +  RF+
Sbjct: 211 FRRADDLAMAMESRCYRGGENRTRMKQLRMTSADLAAFIA----TGLLAVGSIMSRFI 264

Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.

Thermosediminibacter oceani (strain ATCC BAA-1034 / DSM 16646 / JW/IW-1228P) (taxid: 555079)

>sp|A5N4S9|ECFT_CLOK5 Energy-coupling factor transporter transmembrane protein EcfT OS=Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) GN=ecfT PE=3 SV=1

 Score = 58.5 bits (140), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 74/292 (25%), Positives = 140/292 (47%), Gaps = 40/292 (13%)

Query: 107 IYQFIASPSTFLHSVDARIK----LVWLLALVLLPA-RSHILMRFGLVVFTALLSIWILP 161
           I Q++   S F+H +D R+K    L++++ L ++ + + +I     +VVFT L+SI    
Sbjct: 7   IGQYVPGDS-FIHKLDPRVKILISLIYIVDLFIVNSFKGYIF----IVVFT-LISI---- 56

Query: 162 KQVWMDQLGRVSLLSGVLFIMLGLGSDGVPSLVQSRTPPSAITGLPNLPISLGGYSYLIM 221
                       L+S V F  +  G   +  LV        IT + N+ ++ GG +  + 
Sbjct: 57  ------------LVSKVQFTYIYKGLKPIFILV-------LITAVLNIFMT-GGANPPLF 96

Query: 222 KLGPLQFTRKGLSVASTAAC-LTFTIFQSSSLCLATTTPEQLAFALRWFMLPLTYIGVPV 280
           K   L   R+GL +A+  A  L F I  +S L L TT+P +L   +   + P++ IGVP 
Sbjct: 97  KWKFLVVYREGLIMAAFMALRLVFLIIGTSLLTL-TTSPIELTDGIEKLLKPVSKIGVPS 155

Query: 281 AEIVLTLLLSLRFISLVFDEVRNVALGIVSRRINWRQLTMLETIDIFASYIRRIFKNIFG 340
            E+ + + ++LRFI  + DE   +    ++R  +     +++        +  +F + F 
Sbjct: 156 HELAMMMTIALRFIPTLMDETDKIMKAQIARGADLESGNLIQKAKNLVPILVPLFISSFR 215

Query: 341 HAEQISQAMIVRGFRGDSSTHKIYSFSNSSIGVADFVSLFCLVGVVGAALVS 392
            A++++ AM  R +RG     ++     S+    DF++  C + +V  +++S
Sbjct: 216 RADELAMAMEARCYRGGDGRTRMKELKLSN---RDFIASLCALVLVCISILS 264

Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.

Clostridium kluyveri (strain ATCC 8527 / DSM 555 / NCIMB 10680) (taxid: 431943)

>sp|D8IIP4|ECFT_LACFC Energy-coupling factor transporter transmembrane protein EcfT OS=Lactobacillus fermentum (strain CECT 5716) GN=ecfT PE=3 SV=1

 Score = 58.2 bits (139), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 42/151 (27%), Positives = 71/151 (47%), Gaps = 2/151 (1%)

Query: 212 SLGGYSYLIMKLGPLQFTRKGLSVASTAACLTFTIFQSSSLCLATTTPEQLAFALRWFML 271
           S GG+ Y     G +  T  G++ A         I  +S++  ATT P +LA A+   M 
Sbjct: 88  SSGGHVY--WHWGLMAITSGGINQALVILARFILIVLASTVLTATTPPLRLADAIESLMK 145

Query: 272 PLTYIGVPVAEIVLTLLLSLRFISLVFDEVRNVALGIVSRRINWRQLTMLETIDIFASYI 331
           PL  I VPV +I + + ++LRFI  + DEV  +     +R +++   ++   +      +
Sbjct: 146 PLKKIKVPVNQIAMMISIALRFIPTIMDEVNTIVKAQQARGVDFTSGSVYTRVKRMVPIM 205

Query: 332 RRIFKNIFGHAEQISQAMIVRGFRGDSSTHK 362
             +F   F  AE ++ AM  RG+  D    +
Sbjct: 206 VPLFVGAFRRAEDLAVAMEARGYDPDQERTR 236

Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.

Lactobacillus fermentum (strain CECT 5716) (taxid: 712938)

>sp|D6XVS2|ECFT_BACIE Energy-coupling factor transporter transmembrane protein EcfT OS=Bacillus selenitireducens (strain ATCC 700615 / DSM 15326 / MLS10) GN=ecfT PE=3 SV=1

 Score = 57.8 bits (138), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 39/151 (25%), Positives = 74/151 (49%), Gaps = 4/151 (2%)

Query: 246 IFQSSSLCLATTTPEQLAFALRWFMLPLTYIGVPVAEIVLTLLLSLRFISLVFDEVRNVA 305
           I   +SL   TTTP  L   +   + P   + +P  E+ L + ++LRFI  + +E R + 
Sbjct: 120 IITIASLLTLTTTPIDLTDGMERMLAPFKRVKLPTHELALMMSIALRFIPTLIEETRTIV 179

Query: 306 LGIVSRRINWRQLTMLETIDIFASYIRRIFKNIFGHAEQISQAMIVRGFRGDSSTHKIYS 365
           L  ++R  N+ + ++ + +      +  +F   F  AE+++ AM  RG+ G     K   
Sbjct: 180 LAQLARGTNFSEGSLWKRLKALIPILVPLFTQSFKRAEELATAMEARGYAGGEGRTK--- 236

Query: 366 FSNSSIGVADFVSLFCLVGVVGAALVSDRFL 396
           +     G+ D V L   + +  AA++++RF+
Sbjct: 237 YRQLHWGLKDSVVLAVFL-LFAAAVMAERFM 266

Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.

Bacillus selenitireducens (strain ATCC 700615 / DSM 15326 / MLS10) (taxid: 439292)

>sp|D3FRP0|ECFT_BACPE Energy-coupling factor transporter transmembrane protein EcfT OS=Bacillus pseudofirmus (strain OF4) GN=ecfT PE=3 SV=1

 Score = 57.4 bits (137), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 65/144 (45%)

Query: 220 IMKLGPLQFTRKGLSVASTAACLTFTIFQSSSLCLATTTPEQLAFALRWFMLPLTYIGVP 279
           +M LGP+     G+      A    T+   +SL   TT+P  L   L     PL  +G+P
Sbjct: 94  LMTLGPIAIHEGGVMNGLFIATRLLTLVMLTSLITLTTSPIDLTDGLESLFTPLKKVGLP 153

Query: 280 VAEIVLTLLLSLRFISLVFDEVRNVALGIVSRRINWRQLTMLETIDIFASYIRRIFKNIF 339
             E+ L + ++LRFI     E   +    ++R +++    + + +      +  +F + F
Sbjct: 154 AHELALMMSIALRFIPTFMQETEKILKAQMARGVDFSSGPISKRVKALLPLLVPLFISAF 213

Query: 340 GHAEQISQAMIVRGFRGDSSTHKI 363
             AE ++ AM  RG+RG     K+
Sbjct: 214 KRAEDLALAMEARGYRGGEGRTKL 237

Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.

Bacillus pseudofirmus (strain OF4) (taxid: 398511)

>sp|A8YXN4|ECFT_LACH4 Energy-coupling factor transporter transmembrane protein EcfT OS=Lactobacillus helveticus (strain DPC 4571) GN=ecfT PE=3 SV=1

 Score = 57.0 bits (136), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 70/142 (49%), Gaps = 3/142 (2%)

Query: 250 SSLCLATTTPEQLAFALRWFMLPLTYIGVPVAEIVLTLLLSLRFISLVFDEVRNVALGIV 309
           S++   TT P ++A A+ W + PL    VPV EI L + ++LRF+  +FDE   +     
Sbjct: 135 STVMTVTTMPLEIADAMEWLLKPLKIFKVPVDEIALVISIALRFVPTLFDETLKIMNAQR 194

Query: 310 SRRINWRQLTMLETIDIFASYIRRIFKNIFGHAEQISQAMIVRGFRGDSSTHKIYSFSNS 369
           SR  ++    +++     A  +  +F +    A  +S AM  RG+RG +   K Y   N 
Sbjct: 195 SRGADFNDGGLIKRAKAIAPILVPLFIHSLETAIDLSTAMESRGYRGSAGRTK-YRVLNW 253

Query: 370 SIGVADFVSLFCLVGVVGAALV 391
           S    D +SL   + +VG  L+
Sbjct: 254 S--KYDLISLAYFILLVGLLLI 273

Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.

Lactobacillus helveticus (strain DPC 4571) (taxid: 405566)

>sp|Q8G838|Y043_BIFLO Putative ABC transporter ATP-binding protein BL0043 OS=Bifidobacterium longum (strain NCC 2705) GN=BL0043 PE=3 SV=2

 Score = 57.0 bits (136), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 73/282 (25%), Positives = 123/282 (43%), Gaps = 38/282 (13%)

Query: 92  ADKVFRL--ISTATASPIYQFIASPS--------TFLHSVDARIKLVWLLALVLLPARSH 141
           AD+V R+   + A+  P+   +  P+        + +H +D R+K+V  LA         
Sbjct: 498 ADRVVRMPIAAPASGGPVTATVTEPAVSSNGPAHSVIHRLDPRVKMVGFLAA-------- 549

Query: 142 ILMRFGLVVFTAL-LSIWILPKQVWMDQLGRVSLLSGVLFIMLGLGSDGVPSLVQSRTPP 200
           +   F +   T L L I I    +   +L  + +L  +  I++ L   GV +L   RT  
Sbjct: 550 MFTMFAVNTPTQLALGIAITLAVIAAARLNPLRVLESIHPILILLVLMGVVNLFVVRT-- 607

Query: 201 SAITGLPNLPISLGGYSYLIMKLGPLQFTRKGLSVASTAACLTFTIFQSSSLCLATTTPE 260
               G P            ++ LGPL  T +G+++A   AC    +    ++ L TTTP 
Sbjct: 608 ----GTP------------VVALGPLSITDQGVTIAVLYACRFALVIILGAVFLTTTTPT 651

Query: 261 QLAFALRWFMLPLTYIGVPVAEIVLTLLLSLRFISLVFDEVRNVALGIVSRRINWRQLTM 320
            +  A    + PL  +G+   EI L + L+LRFI  + DE R +     +R  +    ++
Sbjct: 652 AMTDAFATLISPLNRLGIHAQEIALVMSLALRFIPTLTDETRAIVDAQSARGGSIETGSL 711

Query: 321 LETIDIFASYIRRIFKNIFGHAEQISQAMIVRGF-RGDSSTH 361
            + I   ++ I  IF     HA+ +S A+  R +  G   TH
Sbjct: 712 AQRIKAMSAIIVPIFAGTLRHADNLSLALDARCYEEGIRRTH 753

Probably part of an ABC transporter complex. Responsible for energy coupling to the transport system.

Bifidobacterium longum (strain NCC 2705) (taxid: 206672)

EC: 3

EC: .

EC: 6

EC: .

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	397
224102575	382	predicted protein [Populus trichocarpa]	0.846	0.879	0.799	1e-154
359477471	390	PREDICTED: protein ABCI12, chloroplastic	0.937	0.953	0.710	1e-143
297736962	399	unnamed protein product [Vitis vinifera]	0.937	0.932	0.694	1e-140
240255379	391	protein ABCI12 [Arabidopsis thaliana] gi	0.979	0.994	0.659	1e-138
449471844	390	PREDICTED: protein ABCI12, chloroplastic	0.972	0.989	0.630	1e-138
449454594	546	PREDICTED: protein ABCI12, chloroplastic	0.831	0.604	0.708	1e-138
297835136	392	AT3g21580/MIL23_14 [Arabidopsis lyrata s	0.884	0.895	0.705	1e-137
357447629	375	Protein ABCI12 [Medicago truncatula] gi|	0.851	0.901	0.721	1e-133
356546452	380	PREDICTED: protein ABCI12, chloroplastic	0.891	0.931	0.630	1e-122
449519956	345	PREDICTED: protein ABCI12, chloroplastic	0.853	0.982	0.635	1e-120

>gi|224102575|ref|XP_002312731.1| predicted protein [Populus trichocarpa] gi|222852551|gb|EEE90098.1| predicted protein [Populus trichocarpa]

 Score =  550 bits (1416), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 271/339 (79%), Positives = 304/339 (89%), Gaps = 3/339 (0%)

Query: 59  KNGDFVIRASVRDKNNNNGASNWVNWLPTEAFSADKVFRLISTATASPIYQFIASPSTFL 118
           K   F +RASV +  + N   NWV+ LP  A S DK+F+LIS ATASPI QFI+SP+TFL
Sbjct: 47  KLTSFKVRASVDNSGDTN---NWVSRLPIGALSGDKIFKLISGATASPIGQFISSPTTFL 103

Query: 119 HSVDARIKLVWLLALVLLPARSHILMRFGLVVFTALLSIWILPKQVWMDQLGRVSLLSGV 178
           HSVD RIKL+WLLALV+LPARSHI+MRFGLVV+ ALLS+ +LP+ VWMDQLGRVSLLSG+
Sbjct: 104 HSVDPRIKLIWLLALVVLPARSHIVMRFGLVVYIALLSVLVLPRHVWMDQLGRVSLLSGI 163

Query: 179 LFIMLGLGSDGVPSLVQSRTPPSAITGLPNLPISLGGYSYLIMKLGPLQFTRKGLSVAST 238
           LFI LGLGSDGVP LVQ RTPP AITGLPNLP+SL GYSYLIMKLGPLQFTRKGLSVAST
Sbjct: 164 LFITLGLGSDGVPPLVQLRTPPPAITGLPNLPMSLSGYSYLIMKLGPLQFTRKGLSVAST 223

Query: 239 AACLTFTIFQSSSLCLATTTPEQLAFALRWFMLPLTYIGVPVAEIVLTLLLSLRFISLVF 298
           AACLTFT+FQS+SLCLATTTPEQLAFA+RWFMLPL YIGVPVAEI LTLLLSLRFI+LVF
Sbjct: 224 AACLTFTVFQSASLCLATTTPEQLAFAMRWFMLPLRYIGVPVAEITLTLLLSLRFINLVF 283

Query: 299 DEVRNVALGIVSRRINWRQLTMLETIDIFASYIRRIFKNIFGHAEQISQAMIVRGFRGDS 358
           DEVRNV+LGIVSRRI W+QLT++ETIDIFASYIRRIFKNIF HAEQISQAMIVRGFRGDS
Sbjct: 284 DEVRNVSLGIVSRRIKWKQLTIIETIDIFASYIRRIFKNIFSHAEQISQAMIVRGFRGDS 343

Query: 359 STHKIYSFSNSSIGVADFVSLFCLVGVVGAALVSDRFLL 397
           ++HKIY  S+SSIG+ADFVSL CL+GVVGAAL+SD +L+
Sbjct: 344 NSHKIYFLSDSSIGMADFVSLLCLIGVVGAALLSDYYLV 382

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359477471|ref|XP_002277396.2| PREDICTED: protein ABCI12, chloroplastic-like [Vitis vinifera]

 Score =  513 bits (1320), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 268/377 (71%), Positives = 307/377 (81%), Gaps = 5/377 (1%)

Query: 21  SPNPKTTIPSNSTLILARNCSNPRLYLPLSKTQKRILKKNGDFVIRASVRDKNNNNGASN 80
           +P  K  +P N + +   N  NP+ +L + KT +    K     IRA+    NN   + N
Sbjct: 19  NPTSKALVPPNLSKLYLLNRQNPKPHLSIYKTLES--AKCPRLQIRATA---NNQGESGN 73

Query: 81  WVNWLPTEAFSADKVFRLISTATASPIYQFIASPSTFLHSVDARIKLVWLLALVLLPARS 140
           W  WLP    +AD++ RLIS+AT+SPI QFI+SP+TFLHSVD RIKLVWLLALVLLPARS
Sbjct: 74  WTKWLPRGVVAADRILRLISSATSSPISQFISSPTTFLHSVDPRIKLVWLLALVLLPARS 133

Query: 141 HILMRFGLVVFTALLSIWILPKQVWMDQLGRVSLLSGVLFIMLGLGSDGVPSLVQSRTPP 200
           HI+MRFGLVV+ A LS+WILP QVWMDQLGRVS LSG+LFIMLGLGSDG P LVQ RTPP
Sbjct: 134 HIIMRFGLVVYLACLSVWILPTQVWMDQLGRVSFLSGLLFIMLGLGSDGAPPLVQLRTPP 193

Query: 201 SAITGLPNLPISLGGYSYLIMKLGPLQFTRKGLSVASTAACLTFTIFQSSSLCLATTTPE 260
            A+ GLPNLP SLGGYSYL+MKLGPLQ TRKGLSVASTAACLTFTIFQS+SLCL TTTPE
Sbjct: 194 PAMMGLPNLPDSLGGYSYLVMKLGPLQLTRKGLSVASTAACLTFTIFQSASLCLTTTTPE 253

Query: 261 QLAFALRWFMLPLTYIGVPVAEIVLTLLLSLRFISLVFDEVRNVALGIVSRRINWRQLTM 320
           QLA AL WFM PL +IGVPVAEI LTLLLSLRFISLVFDEVRNVALGI+SRRINW+QLT 
Sbjct: 254 QLASALWWFMRPLRFIGVPVAEITLTLLLSLRFISLVFDEVRNVALGIISRRINWQQLTT 313

Query: 321 LETIDIFASYIRRIFKNIFGHAEQISQAMIVRGFRGDSSTHKIYSFSNSSIGVADFVSLF 380
           +ETIDIF SY+RRIFKNIF HAEQISQAMIVRGFRGDSSTHK+Y  S+SSI + D VSL 
Sbjct: 314 METIDIFVSYVRRIFKNIFSHAEQISQAMIVRGFRGDSSTHKLYFLSDSSIRMEDVVSLL 373

Query: 381 CLVGVVGAALVSDRFLL 397
           CL+G++GAA++S+  L+
Sbjct: 374 CLIGIIGAAVLSEYLLV 390

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297736962|emb|CBI26163.3| unnamed protein product [Vitis vinifera]

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 268/386 (69%), Positives = 307/386 (79%), Gaps = 14/386 (3%)

Query: 21  SPNPKTTIPSNSTLILARNCSNPRLYLPLSKTQKRILKKNGDFVIRASVRDKNNNNGASN 80
           +P  K  +P N + +   N  NP+ +L + KT +    K     IRA+    NN   + N
Sbjct: 19  NPTSKALVPPNLSKLYLLNRQNPKPHLSIYKTLES--AKCPRLQIRATA---NNQGESGN 73

Query: 81  WVNWLPTEAFSADKVFRLISTATASPIYQFIASPSTFLHSVDARIKLVWLLALVLLPARS 140
           W  WLP    +AD++ RLIS+AT+SPI QFI+SP+TFLHSVD RIKLVWLLALVLLPARS
Sbjct: 74  WTKWLPRGVVAADRILRLISSATSSPISQFISSPTTFLHSVDPRIKLVWLLALVLLPARS 133

Query: 141 HILMRFGLVVFTALLSIWILPKQVWMDQLGRVSLLSGVLFIMLGLGSDGVPSLVQSRTPP 200
           HI+MRFGLVV+ A LS+WILP QVWMDQLGRVS LSG+LFIMLGLGSDG P LVQ RTPP
Sbjct: 134 HIIMRFGLVVYLACLSVWILPTQVWMDQLGRVSFLSGLLFIMLGLGSDGAPPLVQLRTPP 193

Query: 201 SAITGLPNLPISLGGYSYLIMKLGPLQFTRKGLSVASTAACLTFT---------IFQSSS 251
            A+ GLPNLP SLGGYSYL+MKLGPLQ TRKGLSVASTAACLTFT         IFQS+S
Sbjct: 194 PAMMGLPNLPDSLGGYSYLVMKLGPLQLTRKGLSVASTAACLTFTAKINLFLCKIFQSAS 253

Query: 252 LCLATTTPEQLAFALRWFMLPLTYIGVPVAEIVLTLLLSLRFISLVFDEVRNVALGIVSR 311
           LCL TTTPEQLA AL WFM PL +IGVPVAEI LTLLLSLRFISLVFDEVRNVALGI+SR
Sbjct: 254 LCLTTTTPEQLASALWWFMRPLRFIGVPVAEITLTLLLSLRFISLVFDEVRNVALGIISR 313

Query: 312 RINWRQLTMLETIDIFASYIRRIFKNIFGHAEQISQAMIVRGFRGDSSTHKIYSFSNSSI 371
           RINW+QLT +ETIDIF SY+RRIFKNIF HAEQISQAMIVRGFRGDSSTHK+Y  S+SSI
Sbjct: 314 RINWQQLTTMETIDIFVSYVRRIFKNIFSHAEQISQAMIVRGFRGDSSTHKLYFLSDSSI 373

Query: 372 GVADFVSLFCLVGVVGAALVSDRFLL 397
            + D VSL CL+G++GAA++S+  L+
Sbjct: 374 RMEDVVSLLCLIGIIGAAVLSEYLLV 399

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|240255379|ref|NP_566688.4| protein ABCI12 [Arabidopsis thaliana] gi|75164179|sp|Q944H2.1|AB12I_ARATH RecName: Full=Protein ABCI12, chloroplastic; AltName: Full=ABC transporter I family member 12; Short=ABC transporter ABCI.12; Short=AtABCI12; Flags: Precursor gi|16226638|gb|AAL16220.1|AF428451_1 AT3g21580/MIL23_14 [Arabidopsis thaliana] gi|26451327|dbj|BAC42764.1| unknown protein [Arabidopsis thaliana] gi|332643004|gb|AEE76525.1| protein ABCI12 [Arabidopsis thaliana]

 Score =  497 bits (1280), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 263/399 (65%), Positives = 322/399 (80%), Gaps = 10/399 (2%)

Query: 1   MSCTHSSNPTAGFSLSFQFLSPNPKTTIPSNSTLILARNCSNPRLYLPL--SKTQKRILK 58
           M+ ++ +NPT   +++       PK  I   ++ I  RN +NP+L  PL  ++T    L 
Sbjct: 1   MNHSNLANPTVSLTVTLI-----PKHPIRHLTSPIPNRNFTNPKLLFPLRLNETPSSSLA 55

Query: 59  KNGDFVIRASVRDKNNNNGASNWVNWLPTEAFSADKVFRLISTATASPIYQFIASPSTFL 118
               F++RA+V D +   G  NWVN LP     A+ VFRLIS+AT SPI QFI+SP TFL
Sbjct: 56  AKRVFIVRATV-DGDGKTG--NWVNRLPIPGLGAENVFRLISSATGSPIGQFISSPVTFL 112

Query: 119 HSVDARIKLVWLLALVLLPARSHILMRFGLVVFTALLSIWILPKQVWMDQLGRVSLLSGV 178
           HSVD RIKLVWLL LV+LPAR+++++R GLV+ TALLSI +LP+QVW+DQL RVSLLSG+
Sbjct: 113 HSVDPRIKLVWLLTLVVLPARANLVVRLGLVLCTALLSILVLPRQVWIDQLARVSLLSGI 172

Query: 179 LFIMLGLGSDGVPSLVQSRTPPSAITGLPNLPISLGGYSYLIMKLGPLQFTRKGLSVAST 238
           LFI LGLGSDG P ++QSRTPPS+IT LPNLP+SL GYSY+++KLGPLQFTRKGLSV ST
Sbjct: 173 LFITLGLGSDGAPPMLQSRTPPSSITSLPNLPMSLSGYSYMLLKLGPLQFTRKGLSVGST 232

Query: 239 AACLTFTIFQSSSLCLATTTPEQLAFALRWFMLPLTYIGVPVAEIVLTLLLSLRFISLVF 298
           AACLTF IFQS+S+CLATTTPEQLA ALRWF+ PLTYIGVPV+EI+LTLLLSLRFI+LVF
Sbjct: 233 AACLTFIIFQSASICLATTTPEQLALALRWFLFPLTYIGVPVSEIILTLLLSLRFINLVF 292

Query: 299 DEVRNVALGIVSRRINWRQLTMLETIDIFASYIRRIFKNIFGHAEQISQAMIVRGFRGDS 358
           DEVR+V+LGIVSRR+NW+QLT+LET+DIFAS+IRRIFKNIF HAEQISQAMIVRGFRG+S
Sbjct: 293 DEVRSVSLGIVSRRVNWQQLTVLETLDIFASFIRRIFKNIFRHAEQISQAMIVRGFRGES 352

Query: 359 STHKIYSFSNSSIGVADFVSLFCLVGVVGAALVSDRFLL 397
           S+HKIY FS SS   ADF S+ CL+GV+  AL+S+ FL+
Sbjct: 353 SSHKIYFFSGSSNKFADFASVLCLIGVISTALLSEYFLV 391

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449471844|ref|XP_004153425.1| PREDICTED: protein ABCI12, chloroplastic-like [Cucumis sativus]

 Score =  497 bits (1279), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 253/401 (63%), Positives = 313/401 (78%), Gaps = 15/401 (3%)

Query: 1   MSCTHSSNPTAGFSLSFQFLSPNPKTTIPSNSTLILAR--NCSNPRLYLPLSKT--QKRI 56
           MSC +S   T  +SL      P+P     S  + IL      S+ ++  P+  T   K +
Sbjct: 1   MSCPYSYFQTLAYSL------PSPVHIPKSLVSPILTSISPLSSGKVGAPVYWTIVLKPV 54

Query: 57  LKKNGDFVIRASVRDKNNNNGASNWVNWLPTEAFSADKVFRLISTATASPIYQFIASPST 116
           +K++    +RAS   K+++ G   W+ W+P  A +ADK+ R I+ ATASPI QFI+SP T
Sbjct: 55  VKRS--LGVRAS---KSDDTGTEKWLKWIPNGALAADKILRSIAGATASPISQFISSPVT 109

Query: 117 FLHSVDARIKLVWLLALVLLPARSHILMRFGLVVFTALLSIWILPKQVWMDQLGRVSLLS 176
           FLHSVD RIKL+WLLALV+LPARS+I +RFGLV+F A LSIWILP ++W DQLGRVS+LS
Sbjct: 110 FLHSVDPRIKLIWLLALVVLPARSNITIRFGLVIFLAFLSIWILPTELWKDQLGRVSILS 169

Query: 177 GVLFIMLGLGSDGVPSLVQSRTPPSAITGLPNLPISLGGYSYLIMKLGPLQFTRKGLSVA 236
           G+LF+MLGLG+DGVPSL+QSRTPP  + GLP LP S+GGYSYLI KLGPL FTRKGLS+A
Sbjct: 170 GILFVMLGLGADGVPSLIQSRTPPPGMMGLPELPASVGGYSYLIAKLGPLTFTRKGLSIA 229

Query: 237 STAACLTFTIFQSSSLCLATTTPEQLAFALRWFMLPLTYIGVPVAEIVLTLLLSLRFISL 296
           ST+ACLTF +FQS+SLCL TT PEQLAFA+RWFMLPL Y GVPVAEI LTLLLSLRF+SL
Sbjct: 230 STSACLTFVVFQSASLCLTTTAPEQLAFAIRWFMLPLGYFGVPVAEITLTLLLSLRFVSL 289

Query: 297 VFDEVRNVALGIVSRRINWRQLTMLETIDIFASYIRRIFKNIFGHAEQISQAMIVRGFRG 356
           VFDEVRNVALGIVSRRINW+ LT +ET+D+F +Y+RRIFKNIF HAEQISQAMIVRGFRG
Sbjct: 290 VFDEVRNVALGIVSRRINWQMLTTMETVDVFFTYLRRIFKNIFSHAEQISQAMIVRGFRG 349

Query: 357 DSSTHKIYSFSNSSIGVADFVSLFCLVGVVGAALVSDRFLL 397
           DSS+HK+Y  SNSS  +A+ +SL CL+GV+ A++  D+ ++
Sbjct: 350 DSSSHKLYFLSNSSSRMANILSLLCLIGVISASVFFDKVII 390

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449454594|ref|XP_004145039.1| PREDICTED: protein ABCI12, chloroplastic-like [Cucumis sativus]

 Score =  496 bits (1277), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 236/333 (70%), Positives = 284/333 (85%), Gaps = 3/333 (0%)

Query: 65  IRASVRDKNNNNGASNWVNWLPTEAFSADKVFRLISTATASPIYQFIASPSTFLHSVDAR 124
           +RAS   K+++ G   W+ W+P  A +ADK+ R I+ ATASPI QFI+SP TFLHSVD R
Sbjct: 217 VRAS---KSDDTGTEKWLKWIPNGALAADKILRSIAGATASPISQFISSPVTFLHSVDPR 273

Query: 125 IKLVWLLALVLLPARSHILMRFGLVVFTALLSIWILPKQVWMDQLGRVSLLSGVLFIMLG 184
           IKL+WLLALV+LPARS+I +RFGLV+F A LSIWILP ++W DQLGRVS+LSG+LF+MLG
Sbjct: 274 IKLIWLLALVVLPARSNITIRFGLVIFLAFLSIWILPTELWKDQLGRVSILSGILFVMLG 333

Query: 185 LGSDGVPSLVQSRTPPSAITGLPNLPISLGGYSYLIMKLGPLQFTRKGLSVASTAACLTF 244
           LG+DGVPSL+QSRTPP  + GLP LP S+GGYSYLI KLGPL FTRKGLS+AST+ACLTF
Sbjct: 334 LGADGVPSLIQSRTPPPGMMGLPELPASVGGYSYLIAKLGPLTFTRKGLSIASTSACLTF 393

Query: 245 TIFQSSSLCLATTTPEQLAFALRWFMLPLTYIGVPVAEIVLTLLLSLRFISLVFDEVRNV 304
            +FQS+SLCL TT PEQLAFA+RWFMLPL Y GVPVAEI LTLLLSLRF+SLVFDEVRNV
Sbjct: 394 VVFQSASLCLTTTAPEQLAFAIRWFMLPLGYFGVPVAEITLTLLLSLRFVSLVFDEVRNV 453

Query: 305 ALGIVSRRINWRQLTMLETIDIFASYIRRIFKNIFGHAEQISQAMIVRGFRGDSSTHKIY 364
           ALGIVSRRINW+ LT +ET+D+F +Y+RRIFKNIF HAEQISQAMIVRGFRGDSS+HK+Y
Sbjct: 454 ALGIVSRRINWQMLTTMETVDVFFTYLRRIFKNIFSHAEQISQAMIVRGFRGDSSSHKLY 513

Query: 365 SFSNSSIGVADFVSLFCLVGVVGAALVSDRFLL 397
             SNSS  +A+ +SL CL+GV+ A++  D+ ++
Sbjct: 514 FLSNSSSRMANILSLLCLIGVISASVFFDKVII 546

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297835136|ref|XP_002885450.1| AT3g21580/MIL23_14 [Arabidopsis lyrata subsp. lyrata] gi|297331290|gb|EFH61709.1| AT3g21580/MIL23_14 [Arabidopsis lyrata subsp. lyrata]

 Score =  495 bits (1275), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 259/367 (70%), Positives = 305/367 (83%), Gaps = 16/367 (4%)

Query: 38  RNCSNPRLYLPL-------SKTQKRILKKNGDFVIRASVRDKNNNNGASNWVNWLPTEAF 90
           RN +NP+L+ PL       S T KR+      FV+RA+V   + +   SNWVN LP    
Sbjct: 35  RNFANPKLFFPLRLNETPSSLTSKRV------FVVRATV---DGDGKTSNWVNRLPIPGL 85

Query: 91  SADKVFRLISTATASPIYQFIASPSTFLHSVDARIKLVWLLALVLLPARSHILMRFGLVV 150
            A+ VFRLIS+AT SPI QFI+SP TFLHSVD RIKLVWLL LV+LPAR++I++R GLVV
Sbjct: 86  GAENVFRLISSATGSPIGQFISSPVTFLHSVDPRIKLVWLLTLVVLPARANIVVRLGLVV 145

Query: 151 FTALLSIWILPKQVWMDQLGRVSLLSGVLFIMLGLGSDGVPSLVQSRTPPSAITGLPNLP 210
            TALLSI +LP+QVWMDQL RVSLLSG+LFI LGLGSDG P ++QSRTPPS+IT LPNLP
Sbjct: 146 CTALLSILVLPRQVWMDQLARVSLLSGILFITLGLGSDGAPPMLQSRTPPSSITSLPNLP 205

Query: 211 ISLGGYSYLIMKLGPLQFTRKGLSVASTAACLTFTIFQSSSLCLATTTPEQLAFALRWFM 270
           +SL GYSY+++KLGPLQFTRKGLSV STAACLTF IFQS+S+CLATTTPEQLA ALRWF+
Sbjct: 206 MSLSGYSYMLLKLGPLQFTRKGLSVGSTAACLTFIIFQSASICLATTTPEQLALALRWFL 265

Query: 271 LPLTYIGVPVAEIVLTLLLSLRFISLVFDEVRNVALGIVSRRINWRQLTMLETIDIFASY 330
            PLTYIGVPV EI+LTLLLSLRFI+LVFDEVR+V+LGIVSRR+NW+QLT+LET+DIFAS+
Sbjct: 266 FPLTYIGVPVGEIILTLLLSLRFINLVFDEVRSVSLGIVSRRVNWQQLTVLETLDIFASF 325

Query: 331 IRRIFKNIFGHAEQISQAMIVRGFRGDSSTHKIYSFSNSSIGVADFVSLFCLVGVVGAAL 390
           IRRIFKNIF HAEQISQAMIVRGFRG+SS+HKIY FS SS   ADF S+  L+GV+  AL
Sbjct: 326 IRRIFKNIFRHAEQISQAMIVRGFRGESSSHKIYFFSGSSNKFADFASVLSLIGVISTAL 385

Query: 391 VSDRFLL 397
           +S+ FL+
Sbjct: 386 LSEYFLV 392

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357447629|ref|XP_003594090.1| Protein ABCI12 [Medicago truncatula] gi|355483138|gb|AES64341.1| Protein ABCI12 [Medicago truncatula]

 Score =  481 bits (1237), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 246/341 (72%), Positives = 287/341 (84%), Gaps = 3/341 (0%)

Query: 57  LKKNGDFVIRASVRDKNNNNGASNWVNWLPTEAFSADKVFRLISTATASPIYQFIASPST 116
           LK+N    I+AS   K++N  + NW  W+PT +F+ADKVFRLIS+ATASPI QF++SP+T
Sbjct: 38  LKRNPILRIKAS---KDDNGQSPNWSKWIPTGSFAADKVFRLISSATASPIGQFVSSPTT 94

Query: 117 FLHSVDARIKLVWLLALVLLPARSHILMRFGLVVFTALLSIWILPKQVWMDQLGRVSLLS 176
           FLHS+D R+KLVWLL LV+LPARSHI+MRFGLV +  LLSIWILP+  W DQLGRV  LS
Sbjct: 95  FLHSIDPRVKLVWLLVLVVLPARSHIIMRFGLVAYLTLLSIWILPRNAWKDQLGRVYFLS 154

Query: 177 GVLFIMLGLGSDGVPSLVQSRTPPSAITGLPNLPISLGGYSYLIMKLGPLQFTRKGLSVA 236
            +LFI +GLGSDGVP+LVQSRTPP A++GLPNLPISL GYSY+I KLGPL FTRKGLSV 
Sbjct: 155 ALLFITIGLGSDGVPALVQSRTPPPAVSGLPNLPISLTGYSYVISKLGPLTFTRKGLSVG 214

Query: 237 STAACLTFTIFQSSSLCLATTTPEQLAFALRWFMLPLTYIGVPVAEIVLTLLLSLRFISL 296
           ST ACLTFT+FQS+SLCL TTTPEQLA ALRWFMLPL YIGV V+EIVLTLLLSLRFISL
Sbjct: 215 STVACLTFTVFQSASLCLTTTTPEQLASALRWFMLPLRYIGVSVSEIVLTLLLSLRFISL 274

Query: 297 VFDEVRNVALGIVSRRINWRQLTMLETIDIFASYIRRIFKNIFGHAEQISQAMIVRGFRG 356
           VFDEVRN+ALGIVSRR+NW+QLT++ETIDIF +Y RRIFKNIF HAEQISQAMI RGF+G
Sbjct: 275 VFDEVRNIALGIVSRRVNWKQLTVMETIDIFFNYFRRIFKNIFSHAEQISQAMIARGFKG 334

Query: 357 DSSTHKIYSFSNSSIGVADFVSLFCLVGVVGAALVSDRFLL 397
           D   HKIY  S SS G+AD V L  L  V+GA+L+S+ +L+
Sbjct: 335 DVDNHKIYFLSESSFGMADIVCLLNLTVVIGASLLSEYYLV 375

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356546452|ref|XP_003541640.1| PREDICTED: protein ABCI12, chloroplastic-like [Glycine max]

 Score =  443 bits (1139), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 237/376 (63%), Positives = 286/376 (76%), Gaps = 22/376 (5%)

Query: 1   MSCTHSSNPTAGFSLSFQFLSPNPKTTI-PSNSTLILARNCSNPRLYLPLSKTQKRILKK 59
           M+C H++  T   SL+   L P P + + P   + IL              +  + +L  
Sbjct: 1   MNCNHAA--TTFLSLA---LPPPPSSALFPKRPSAIL--------------RPYQTLLSS 41

Query: 60  NGDFVIRASVRDKNNNNGASNWVNWLPTEAFSADKVFRLISTATASPIYQFIASPSTFLH 119
           N    +R    + ++N   +NW  W+P  +F+ADKVFRLI  ATASPI QF+ SP+TFLH
Sbjct: 42  NTRLGLRVRASNGDSNVQPANWSQWIPAGSFAADKVFRLIPGATASPIGQFVPSPATFLH 101

Query: 120 SVDARIKLVWLLALVLLPARSHILMRFGLVVFTALLSIWILPKQVWMDQLGRVSLLSGVL 179
           S+D R+KLVWLL LV+LPARSHI+M+FGLVV+  LLSIW+LPK+   DQLGRV LLS +L
Sbjct: 102 SIDPRVKLVWLLDLVVLPARSHIIMQFGLVVYLTLLSIWVLPKKC--DQLGRVYLLSELL 159

Query: 180 FIMLGLGSDGVPSLVQSRTPPSAITGLPNLPISLGGYSYLIMKLGPLQFTRKGLSVASTA 239
           FI  GLGSDGVP++VQ RTPP A+ GLPNLP+SL GY+Y IMKLGPL FTRKGLSVAST 
Sbjct: 160 FITSGLGSDGVPAIVQLRTPPPAMMGLPNLPVSLTGYAYTIMKLGPLTFTRKGLSVASTV 219

Query: 240 ACLTFTIFQSSSLCLATTTPEQLAFALRWFMLPLTYIGVPVAEIVLTLLLSLRFISLVFD 299
           ACLTFT+FQS+S CL  T+PEQLAFALRWFMLPL YIGV V+EIVLTLLLSLRFISLVFD
Sbjct: 220 ACLTFTVFQSASPCLTATSPEQLAFALRWFMLPLKYIGVSVSEIVLTLLLSLRFISLVFD 279

Query: 300 EVRNVALGIVSRRINWRQLTMLETIDIFASYIRRIFKNIFGHAEQISQAMIVRGFRGDSS 359
           EVRN+ALGIVSRR+NW QLT++ETIDIF +Y RRIFKNIF HAEQI+QAM+VRGF+GD+ 
Sbjct: 280 EVRNIALGIVSRRVNWTQLTVMETIDIFFNYFRRIFKNIFSHAEQITQAMVVRGFKGDTG 339

Query: 360 THKIYSFSNSSIGVAD 375
           +HKIY  S SS G+ D
Sbjct: 340 SHKIYFLSESSFGMLD 355

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449519956|ref|XP_004167000.1| PREDICTED: protein ABCI12, chloroplastic-like [Cucumis sativus]

 Score =  439 bits (1128), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 225/354 (63%), Positives = 275/354 (77%), Gaps = 15/354 (4%)

Query: 1   MSCTHSSNPTAGFSLSFQFLSPNPKTTIPSNSTLILAR--NCSNPRLYLPLSKT--QKRI 56
           MSC +S   T  +SL      P+P     S  + IL      S+ ++  P+  T   K +
Sbjct: 1   MSCPYSYFQTLAYSL------PSPVHIPKSLVSPILTSISPLSSGKVGAPVYWTIVLKPV 54

Query: 57  LKKNGDFVIRASVRDKNNNNGASNWVNWLPTEAFSADKVFRLISTATASPIYQFIASPST 116
           +K++    +RAS   K+++ G   W+ W+P  A +ADK+ R I+ ATASPI QFI+SP T
Sbjct: 55  VKRS--LGVRAS---KSDDTGTEKWLKWIPNGALAADKILRSIAGATASPISQFISSPVT 109

Query: 117 FLHSVDARIKLVWLLALVLLPARSHILMRFGLVVFTALLSIWILPKQVWMDQLGRVSLLS 176
           FLHSVD RIKL+WLLALV+LPARS+I +RFGLV+F A LSIWILP ++W DQLGRVS+LS
Sbjct: 110 FLHSVDPRIKLIWLLALVVLPARSNITIRFGLVIFLAFLSIWILPTELWKDQLGRVSILS 169

Query: 177 GVLFIMLGLGSDGVPSLVQSRTPPSAITGLPNLPISLGGYSYLIMKLGPLQFTRKGLSVA 236
           G+LF+MLGLG+DGVPSL+QSRTPP  + GLP LP S+GGYSYLI KLGPL FTRKGLS+A
Sbjct: 170 GILFVMLGLGADGVPSLIQSRTPPPGMMGLPELPASVGGYSYLIAKLGPLTFTRKGLSIA 229

Query: 237 STAACLTFTIFQSSSLCLATTTPEQLAFALRWFMLPLTYIGVPVAEIVLTLLLSLRFISL 296
           ST+ACLTF +FQS+SLCL TT PEQLAFA+RWFMLPL Y GVPVAEI LTLLLSLRF+SL
Sbjct: 230 STSACLTFVVFQSASLCLTTTAPEQLAFAIRWFMLPLGYFGVPVAEITLTLLLSLRFVSL 289

Query: 297 VFDEVRNVALGIVSRRINWRQLTMLETIDIFASYIRRIFKNIFGHAEQISQAMI 350
           VFDEVRNVALGIVSRRINW+ LT +ET+D+F +Y+RRIFKNIF HAEQISQ ++
Sbjct: 290 VFDEVRNVALGIVSRRINWQMLTTMETVDVFFTYLRRIFKNIFSHAEQISQDLV 343

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	397
TAIR|locus:2089910	391	ABCI12 "ATP-binding cassette I	0.979	0.994	0.593	5e-115
TIGR_CMR|BA_0141	264	BA_0141 "cobalt transport prot	0.423	0.636	0.232	5e-05

TAIR|locus:2089910 ABCI12 "ATP-binding cassette I12" [Arabidopsis thaliana (taxid:3702)]

 Score = 1134 (404.2 bits), Expect = 5.0e-115, P = 5.0e-115
 Identities = 237/399 (59%), Positives = 291/399 (72%)

Query:     1 MSCTHSSNPTAGFSLSFQFLSPNPKTTIPSNSTLILARNCSNPRLYLPL--SKTQKRILK 58
             M+ ++ +NPT   SL+   +   PK  I   ++ I  RN +NP+L  PL  ++T    L 
Sbjct:     1 MNHSNLANPTV--SLTVTLI---PKHPIRHLTSPIPNRNFTNPKLLFPLRLNETPSSSLA 55

Query:    59 KNGDFVIRASVRDKXXXXXXXXXXXWLPTEAFSADKVFRLISTATASPIYQFIASPSTFL 118
                 F++RA+V               LP     A+ VFRLIS+AT SPI QFI+SP TFL
Sbjct:    56 AKRVFIVRATVDGDGKTGNWVNR---LPIPGLGAENVFRLISSATGSPIGQFISSPVTFL 112

Query:   119 HSVDARIKXXXXXXXXXXPARSHILMRFGLVVFTALLSIWILPKQVWMDQLGRVSLLSGV 178
             HSVD RIK          PAR+++++R GLV+ TALLSI +LP+QVW+DQL RVSLLSG+
Sbjct:   113 HSVDPRIKLVWLLTLVVLPARANLVVRLGLVLCTALLSILVLPRQVWIDQLARVSLLSGI 172

Query:   179 LFIMLGLGSDGVPSLVQSRTPPSAITGLPNLPISLGGYSYLIMKLGPLQFTRKGLSVAST 238
             LFI LGLGSDG P ++QSRTPPS+IT LPNLP+SL GYSY+++KLGPLQFTRKGLSV ST
Sbjct:   173 LFITLGLGSDGAPPMLQSRTPPSSITSLPNLPMSLSGYSYMLLKLGPLQFTRKGLSVGST 232

Query:   239 AACLTFTIFQSSSLCLATTTPEQLAFALRWFMLPLTYIGVPVAEXXXXXXXXXXXXXXXX 298
             AACLTF IFQS+S+CLATTTPEQLA ALRWF+ PLTYIGVPV+E                
Sbjct:   233 AACLTFIIFQSASICLATTTPEQLALALRWFLFPLTYIGVPVSEIILTLLLSLRFINLVF 292

Query:   299 DEVRNVALGIVSRRINWRQLTMLETIDIFASYIRRIFKNIFGHAEQISQAMIVRGFRGDS 358
             DEVR+V+LGIVSRR+NW+QLT+LET+DIFAS+IRRIFKNIF HAEQISQAMIVRGFRG+S
Sbjct:   293 DEVRSVSLGIVSRRVNWQQLTVLETLDIFASFIRRIFKNIFRHAEQISQAMIVRGFRGES 352

Query:   359 STHKIYSFSNSSIGVADFVSLFCLVGVVGAALVSDRFLL 397
             S+HKIY FS SS   ADF S+ CL+GV+  AL+S+ FL+
Sbjct:   353 SSHKIYFFSGSSNKFADFASVLCLIGVISTALLSEYFLV 391

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0000023 "maltose metabolic process" evidence=RCA

GO:0019252 "starch biosynthetic process" evidence=RCA

GO:0043085 "positive regulation of catalytic activity" evidence=RCA

TIGR_CMR|BA_0141 BA_0141 "cobalt transport protein" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 122 (48.0 bits), Expect = 5.0e-05, P = 5.0e-05
 Identities = 39/168 (23%), Positives = 65/168 (38%)

Query:   219 LIMKLGPLQFTRKGLSVASTAACLTFTIFQSSSLCLATTTPEQLAFALRWFMLPLTYIGV 278
             ++ +LG      KGL      +   F I   ++L   TTTP ++   L   + PL  I V
Sbjct:    92 VLFQLGWFSIHEKGLEQGIYISIRFFVIILMTTLLTLTTTPIEITDGLETLLKPLKRIKV 151

Query:   279 PVAEXXXXXXXXXXXXXXXXDEVRNVALGIVSRRINWRQLTMLETIDIFASYIRRIFKNI 338
             PV E                DE   +     SR I++    + + +    S +  +F + 
Sbjct:   152 PVHEIALMMSISLRFIPTLMDETSKIMKAQSSRGIDFAGGPIKDRMKAIISLLVPLFISA 211

Query:   339 FGHAEQISQAMIVRGFRGDSSTHKIYSFSNSSIGVADFVSLFCLVGVV 386
             F  AE ++ AM  RG++      K       +      +SL CL  ++
Sbjct:   212 FKRAEDLAIAMEARGYQSGEGRTKFRQLRWKTSDTVTIISLLCLACIL 259


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.137   0.408    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      397       360   0.00082  117 3  11 22  0.45    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  605 (64 KB)
  Total size of DFA:  209 KB (2117 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  27.30u 0.09s 27.39t   Elapsed:  00:00:04
  Total cpu time:  27.30u 0.09s 27.39t   Elapsed:  00:00:04
  Start:  Tue May 21 03:02:32 2013   End:  Tue May 21 03:02:36 2013

GO:0006824 "cobalt ion transport" evidence=ISS

GO:0015087 "cobalt ion transmembrane transporter activity" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q944H2	AB12I_ARATH	No assigned EC number	0.6591	0.9798	0.9948	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	397
COG0619	252	COG0619, CbiQ, ABC-type cobalt transport system, p	3e-11
pfam02361	217	pfam02361, CbiQ, Cobalt transport protein	2e-10
TIGR02454	198	TIGR02454, CbiQ_TIGR, cobalt ABC transporter, perm	3e-06

>gnl|CDD|223692 COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]

 Score = 62.8 bits (153), Expect = 3e-11
 Identities = 58/272 (21%), Positives = 106/272 (38%), Gaps = 36/272 (13%)

Query: 115 STFLHSVDARIKLVWLLALVLLPARSHILMRFGLVVFTALLSIWILPKQVWMDQLGRVSL 174
           ++ LH +D R KL+ L  L++L    + L+   +++   LL + +        ++    L
Sbjct: 10  NSLLHRLDPRTKLLLLFLLIILVFLLNDLVLLLIILLLTLLLVVLA-------KIPLKFL 62

Query: 175 LSGVLFIMLGLGSDGVPSLVQSRTPPSAITGLPNLPISLGGYSYLIMKLGPLQFTRKGLS 234
           L  + F++LGL                    +        G +  +  LGP+      L 
Sbjct: 63  LLLLGFLLLGLL------------------LIAFTNGFSLGPAVGLFGLGPVTIG--SLV 102

Query: 235 VASTAACLTFTIFQSSSLCLATTTPEQLAFALRWFMLPLTYIGVPVAEIVLTLLLSLRFI 294
           +    A     I  ++ L   TT P +L  AL         + VP+ E+ L L L+LRFI
Sbjct: 103 LGLLIALRVLLILLAALLLTLTTPPLELTSALE-------RLLVPLVELALLLSLALRFI 155

Query: 295 SLVFDEVRNVALGIVSRRINWRQLTMLETIDIFASYIRRIFKNIFGHAEQISQAMIVRGF 354
            L+ +E++ +     +R ++    +    I    + I  +       AE+++ AM  RGF
Sbjct: 156 PLLLEELQRIRRAQRARGLDLS--SGKRRIKSLGALIIPLLIRSLRRAEELAIAMEARGF 213

Query: 355 RGDSSTHKIYSFSNSSIGVADFVSLFCLVGVV 386
           RG+                     L  L+ ++
Sbjct: 214 RGNKRRTSYRELKFKRRDYLFLALLLLLIALL 245

Length = 252

>gnl|CDD|216994 pfam02361, CbiQ, Cobalt transport protein

 Score = 60.0 bits (146), Expect = 2e-10
 Identities = 55/247 (22%), Positives = 93/247 (37%), Gaps = 35/247 (14%)

Query: 114 PSTFLHSVDARIKLVWLLALVLLPARSHILMRFGLVVFTALLSIWI-LPKQVWMDQLGRV 172
            S++LH +D R+KL+WLL LVLL       +   +++   LL++ +    +     L   
Sbjct: 1   GSSWLHRLDPRVKLIWLLLLVLLAVLPPGPVGLLIIIALLLLTLLLVGLPRFLARFLRLP 60

Query: 173 SLLSGVLFIMLGLGSDGVPSLVQSRTPPSAITGLPNLPISLGGYSYLIMKLGPLQFTRKG 232
            L   + FI+L         L Q+                       +   G +  T  G
Sbjct: 61  LLFPLLGFIIL---------LFQNIGTEGQF----------------VFSGGGIGITSWG 95

Query: 233 LSVASTAACLTFTIFQSSSLCLATTTPEQLAFALRWFMLPLTYIGVPVAEIVLTLLLSLR 292
           L      A    T   +      TT P +L   LR   +PL        E+   LLL+ R
Sbjct: 96  LLRGLLLALRISTSLSALLFLALTTPPAELTSGLRRLGVPL--------ELAEILLLAYR 147

Query: 293 FISLVFDEVRNVALGIVSRRINWRQLTMLETIDIFASYIRRIFKNIFGHAEQISQAMIVR 352
           +I L+ +E + +     SR  +  +  +          +  +F      AE+++ AM  R
Sbjct: 148 YIPLLLEEAQRIMQAQKSRGGDS-KGGIRRRWRSLGLLVIPLFIRALKRAERLAIAMEAR 206

Query: 353 GFRGDSS 359
           G+ G  +
Sbjct: 207 GYTGSKN 213

This family consists of various cobalt transport proteins Most of which are found in Cobalamin (Vitamin B12) biosynthesis operons. In Salmonella the cbiN cbiQ (product CbiQ in this family) and cbiO are likely to form an active cobalt transport system. Length = 217

>gnl|CDD|233873 TIGR02454, CbiQ_TIGR, cobalt ABC transporter, permease protein CbiQ

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 12/152 (7%)

Query: 202 AITGLPNLPISLGGYSYLIMKLGP-LQFTRKGLSVASTAACLTFTIFQSSSLCLATTTPE 260
            + GL  L  S G     ++ LGP L  TR+GL  A T A  + T   +  L   TT   
Sbjct: 58  LLVGLLLLLFSNGTPGEPLLVLGPLLSITREGLVYALTLALRSLTSLSAVYLLALTTPFP 117

Query: 261 QLAFALRWFMLPLTYIGVPVAEIVLTLLLSLRFISLVFDEVRNVALGIVSRRINWRQLTM 320
           +L  ALR   +P          +V  LLL+ R++ ++ +E+R + L   ++R      ++
Sbjct: 118 ELLSALRRLGVP--------PLLVEILLLTYRYLFVLLEELRRMLL---AQRSRLGYRSL 166

Query: 321 LETIDIFASYIRRIFKNIFGHAEQISQAMIVR 352
           +       +    +F      AE++  AM  R
Sbjct: 167 MRGWRSLGALAGALFIRSLERAERVYLAMESR 198

This model represents the permease component of the cobalt-specific ABC transporter. This model finds permeases which are generally next to the other subunits of the complex (CbiN and CbiO) or the cobalamin biosynthesis protein CbiM which is a transmembrane protein which likely interacts with the complex in some manner. In genomes which possess all of these subunits the ATPase is most likely running in the direction of import (for the biosynthesis of coenzyme B12). In other genomes, this subunit may be involved in the export of cobalt and/or other closely related heavy metals [Transport and binding proteins, Cations and iron carrying compounds]. Length = 198

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	397
COG0619	252	CbiQ ABC-type cobalt transport system, permease co	100.0
PF02361	224	CbiQ: Cobalt transport protein; InterPro: IPR00333	100.0
PRK15485	225	cobalt transport protein CbiQ; Provisional	100.0
TIGR02454	198	CbiQ_TIGR cobalt ABC transporter, permease protein	99.97

>COG0619 CbiQ ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism]

Probab=100.00  E-value=7e-35  Score=279.76  Aligned_cols=246  Identities=24%  Similarity=0.332  Sum_probs=196.8

Q ss_pred             cccccccCCCCcccccCHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH--HHHhhccHHHHHHHHHHHHHHHHHHHHHH
Q 015954          106 PIYQFIASPSTFLHSVDARIKLVWLLALVLLPARSHILMRFGLVVFTAL--LSIWILPKQVWMDQLGRVSLLSGVLFIML  183 (397)
Q Consensus       106 ~~~~y~~~~~S~lhrldPr~Kll~~l~~~i~~~~~~~~~~l~ll~~l~l--l~~~~lp~~~~~~~l~~l~~l~~~lfi~l  183 (397)
                      .+++|.|+ +|++|++|||+|++..+++++..+..+++...++...+.+  ...++.|.+.+...+++......++++..
T Consensus         2 ~l~~y~~~-~s~~h~l~pr~kll~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~ki~~~~l~~~~~~~~~~~~~~~~~~   80 (252)
T COG0619           2 ILERYVPG-NSLLHRLDPRTKLLLLFLLIILVFLLNDLVLLLIILLLTLLLVVLAKIPLKFLLLLLGFLLLGLLLIAFTN   80 (252)
T ss_pred             cccccCcC-CChhHhhChHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHh
Confidence            46789999 9999999999999999999999999998887666665544  23467777666655554432222111110


Q ss_pred             hhccCCCcccccccCCCCcccCCCCCccccCCcceEEEEeccccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Q 015954          184 GLGSDGVPSLVQSRTPPSAITGLPNLPISLGGYSYLIMKLGPLQFTRKGLSVASTAACLTFTIFQSSSLCLATTTPEQLA  263 (397)
Q Consensus       184 ~~~~~g~p~~~q~~~p~~~~~gl~~l~~~~~g~~~vl~~~G~~~it~eGl~~al~~~lR~~~il~~~~ll~~TT~p~~l~  263 (397)
                           +       +.               .|+....+.+|..  +.+++..|+.++.|++.++.++.++..||++.|+.
T Consensus        81 -----~-------~~---------------~~~~~~~~~~~~~--~~~~l~~~~~i~~R~~~~~~~~~ll~~TT~~~el~  131 (252)
T COG0619          81 -----G-------FS---------------LGPAVGLFGLGPV--TIGSLVLGLLIALRVLLILLAALLLTLTTPPLELT  131 (252)
T ss_pred             -----c-------CC---------------CCCcceeeecccc--hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence                 0       00               1111234455543  33338999999999999999999999999999999


Q ss_pred             HHHHHhhccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 015954          264 FALRWFMLPLTYIGVPVAEIVLTLLLSLRFISLVFDEVRNVALGIVSRRINWRQLTMLETIDIFASYIRRIFKNIFGHAE  343 (397)
Q Consensus       264 ~aL~~ll~PLr~lgvP~~~ial~l~LalRfIP~L~~e~~~I~~AqraRG~~~~~~~~~~r~~~~~~li~pL~~~sl~rAe  343 (397)
                      ++++       +++.|..++++++++++||||++.||.++|++||++||.+.++++  +++|.+..+++|++++++|+||
T Consensus       132 ~~l~-------~l~~P~~~~~~~~~la~R~Ip~l~~e~~~i~~Aq~~Rg~~~~~~~--~~~~~~~~li~pL~i~sl~rae  202 (252)
T COG0619         132 SALE-------RLLVPLVELALLLSLALRFIPLLLEELQRIRRAQRARGLDLSSGK--RRIKSLGALIIPLLIRSLRRAE  202 (252)
T ss_pred             HHHH-------HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCccccc--hhHHHHHHHHHHHHHHHHHHHH
Confidence            9996       667773169999999999999999999999999999999987665  8999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCCCCeeeecccCCCCChhHHHHHHHHHHHHHHHHHHH
Q 015954          344 QISQAMIVRGFRGDSSTHKIYSFSNSSIGVADFVSLFCLVGVVGAALVSD  393 (397)
Q Consensus       344 ~la~AMeaRGf~~~~~rT~~~~l~~~~~~~~D~v~l~i~i~l~~~~i~~~  393 (397)
                      +++.|||+|||+++++||+++.   .+++.+|++++++++++.+..++.+
T Consensus       203 ~la~AMe~RGy~~~~~rt~~~~---~~~~~~D~~~~~~~~~~~~l~~~~~  249 (252)
T COG0619         203 ELAIAMEARGFRGNKRRTSYRE---LKFKRRDYLFLALLLLLIALLILLT  249 (252)
T ss_pred             HHHHHHHHcCCCCCCCCceeeE---eccccccHHHHHHHHHHHHHHHHHh
Confidence            9999999999999888888764   8999999999999888887665544

>PF02361 CbiQ: Cobalt transport protein; InterPro: IPR003339 Cobalt transport proteins are most often found in cobalamin (vitamin B12) biosynthesis operons

Probab=100.00  E-value=1.1e-33  Score=264.08  Aligned_cols=221  Identities=27%  Similarity=0.379  Sum_probs=173.6

Q ss_pred             CCCcccccCHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH--HHHHhhccHHHHHHHHHHHHHHHHHHHHHHhhccCCCc
Q 015954          114 PSTFLHSVDARIKLVWLLALVLLPARSHILMRFGLVVFTA--LLSIWILPKQVWMDQLGRVSLLSGVLFIMLGLGSDGVP  191 (397)
Q Consensus       114 ~~S~lhrldPr~Kll~~l~~~i~~~~~~~~~~l~ll~~l~--ll~~~~lp~~~~~~~l~~l~~l~~~lfi~l~~~~~g~p  191 (397)
                      |||++|++||++|+++.+++++.++..+++....++..+.  .......+.+.+++.....+.+.+..++...+.   . 
T Consensus         1 ~~s~l~~l~p~~kl~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-   76 (224)
T PF02361_consen    1 RNSFLHRLDPRTKLIFLILLSVIVFLTNNPVFLALILALVLLILLIARLPKRFKRIWLRLLWLLFILGFIILLFG---F-   76 (224)
T ss_pred             CCCcccccCHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH---h-
Confidence            5899999999999999999999999999988665544433  223344453334433332222222222222110   0 


Q ss_pred             ccccccCCCCcccCCCCCccccCCcceEEEEecc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhh
Q 015954          192 SLVQSRTPPSAITGLPNLPISLGGYSYLIMKLGP-LQFTRKGLSVASTAACLTFTIFQSSSLCLATTTPEQLAFALRWFM  270 (397)
Q Consensus       192 ~~~q~~~p~~~~~gl~~l~~~~~g~~~vl~~~G~-~~it~eGl~~al~~~lR~~~il~~~~ll~~TT~p~~l~~aL~~ll  270 (397)
                        .|...              ..  +...++.|. +.++.||+.+|+.+++|+++++.++.++..||+++|+..+++   
T Consensus        77 --~~~~~--------------~~--~~~~~~~~~~~~i~~~g~~~~~~~~lr~~~~~~~~~~~~~tt~~~~l~~~l~---  135 (224)
T PF02361_consen   77 --YQLFT--------------FP--GPFVFSIGGSFSITQEGLIYAALLALRILAILLASLLFILTTSPSDLISALR---  135 (224)
T ss_pred             --hhccc--------------CC--CceeeeccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHH---
Confidence              00000              11  134444444 789999999999999999999999999999999999999995   


Q ss_pred             ccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 015954          271 LPLTYIGVPVAEIVLTLLLSLRFISLVFDEVRNVALGIVSRRINWRQLTMLETIDIFASYIRRIFKNIFGHAEQISQAMI  350 (397)
Q Consensus       271 ~PLr~lgvP~~~ial~l~LalRfIP~L~~e~~~I~~AqraRG~~~~~~~~~~r~~~~~~li~pL~~~sl~rAe~la~AMe  350 (397)
                          ++++|.+++++++++++||||.+.||++++++||++||.+.++++.+++++.+..+++|++.+++++|||+++|||
T Consensus       136 ----~l~~P~~~~~~~i~l~~r~ip~l~~~~~~i~~A~~~Rg~~~~~~~~~~~~~~~~~~~~pll~~al~~a~~la~Am~  211 (224)
T PF02361_consen  136 ----KLRLPYPKIALMISLTLRFIPLLLEEFKRIREAQRLRGVGIGRGGIRNRLRSLGPLLVPLLIRALRRAEELAEAME  211 (224)
T ss_pred             ----HhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence                7889976899999999999999999999999999999999877889999999999999999999999999999999


Q ss_pred             HcCCCCCCCCeee
Q 015954          351 VRGFRGDSSTHKI  363 (397)
Q Consensus       351 aRGf~~~~~rT~~  363 (397)
                      +|||+++++||+|
T Consensus       212 ~RGf~~~~~Rt~y  224 (224)
T PF02361_consen  212 ARGFGGGKKRTSY  224 (224)
T ss_pred             HCCCCCCCCCCCC
Confidence            9999999899864

Salmonella typhimurium synthesizes cobalamin (vitamin B12) de novo under anaerobic conditions. Not all Salmonella and Pseudomonas cobalamin synthetic genes have apparent homologs in the other species suggesting that the cobalamin biosynthetic pathways differ between the two organisms [].; GO: 0015087 cobalt ion transmembrane transporter activity, 0006824 cobalt ion transport, 0009236 cobalamin biosynthetic process

>PRK15485 cobalt transport protein CbiQ; Provisional

Probab=100.00  E-value=9.6e-32  Score=254.38  Aligned_cols=213  Identities=16%  Similarity=0.189  Sum_probs=165.2

Q ss_pred             ccccccCCCCcccccCHHHHHHHHHHHHHHHHhhchHHHHHHHHHHH--HHHHhhccHHHHHHHHHHHHHHHHHHHHHHh
Q 015954          107 IYQFIASPSTFLHSVDARIKLVWLLALVLLPARSHILMRFGLVVFTA--LLSIWILPKQVWMDQLGRVSLLSGVLFIMLG  184 (397)
Q Consensus       107 ~~~y~~~~~S~lhrldPr~Kll~~l~~~i~~~~~~~~~~l~ll~~l~--ll~~~~lp~~~~~~~l~~l~~l~~~lfi~l~  184 (397)
                      +++|... |+++| +|||+|+++.+.++++.+..+++..+.+...+.  .+..+++|.+.+.+.+.....+.++.++...
T Consensus         4 ~d~~a~~-~~l~~-ldPr~Kl~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~ip~~~~lk~l~~~~~f~i~~~~~~~   81 (225)
T PRK15485          4 IDKLSYQ-SRWIH-VAPQRKFLLYLAMMILAFTLPPLGQAIELLIIAGLTCWLLRISLWRYLRWLAIPFGFLLVGLLTIL   81 (225)
T ss_pred             HHHHHhh-CCCcc-CCHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455555 89999 999999999999999888777776555444333  3335688987776644322111111111111


Q ss_pred             hccCCCcccccccCCCCcccCCCCCccccCCcceEEE--Eecc--ccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Q 015954          185 LGSDGVPSLVQSRTPPSAITGLPNLPISLGGYSYLIM--KLGP--LQFTRKGLSVASTAACLTFTIFQSSSLCLATTTPE  260 (397)
Q Consensus       185 ~~~~g~p~~~q~~~p~~~~~gl~~l~~~~~g~~~vl~--~~G~--~~it~eGl~~al~~~lR~~~il~~~~ll~~TT~p~  260 (397)
                      +...         .              .+|  +.++  .+|+  +.+|+||+..|..+.+|.+.++.++.++..||+++
T Consensus        82 ~~~~---------~--------------~~~--~~~~~~~~g~~~l~it~~gl~~a~~~~~R~~~~~~~~~~l~~TT~~~  136 (225)
T PRK15485         82 FSIS---------R--------------DPQ--SLLAGISIGPYWIGISRAGVVTANQTFWRSLAALAATLWFVLNLPFP  136 (225)
T ss_pred             hhcC---------C--------------CCc--cceeeeecCceeEEecHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHH
Confidence            1000         0              011  2232  4563  78999999999999999999999999999999999


Q ss_pred             HHHHHHHHhhccccccCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHH
Q 015954          261 QLAFALRWFMLPLTYIGVPVAEIVLTLLLSLRFISLVFDEVRNVALGIVSRRINWRQLTMLETIDIFASYIRRIFKNIFG  340 (397)
Q Consensus       261 ~l~~aL~~ll~PLr~lgvP~~~ial~l~LalRfIP~L~~e~~~I~~AqraRG~~~~~~~~~~r~~~~~~li~pL~~~sl~  340 (397)
                      |+..++       +++|+|+ ++++++.+++||||++.||.+++++||++|.+   .++.++++|.+..+++|+++++++
T Consensus       137 ~l~~~L-------~~l~vP~-~~~~~~~l~~Rfi~~l~~e~~~i~~Aq~~R~~---~~~~~~~~~~~~~l~~~L~~~s~~  205 (225)
T PRK15485        137 QLIKLL-------KRAHIPR-LLTEQILLTWRFIFILLEEAAAIRRAQSLRFG---YCSLPNGYRSLAMLVGLLFTRVLM  205 (225)
T ss_pred             HHHHHH-------HHcCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC---CCCccHHHHHHHHHHHHHHHHHHH
Confidence            999888       5999997 99999999999999999999999999999942   346678999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCC
Q 015954          341 HAEQISQAMIVRGFRGD  357 (397)
Q Consensus       341 rAe~la~AMeaRGf~~~  357 (397)
                      |||++++|||+|||+|+
T Consensus       206 rae~l~~Am~aRgy~g~  222 (225)
T PRK15485        206 RYQQMTTTLDIKLYQGD  222 (225)
T ss_pred             HHHHHHHHHHhCCCCCc
Confidence            99999999999999985

>TIGR02454 CbiQ_TIGR cobalt ABC transporter, permease protein CbiQ

Probab=99.97  E-value=5.4e-29  Score=229.87  Aligned_cols=195  Identities=27%  Similarity=0.344  Sum_probs=159.3

Q ss_pred             cCHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHH--HHHhhccHHHHHHHHHHHHHHHHHHHHHHhhccCCCcccccccC
Q 015954          121 VDARIKLVWLLALVLLPARSHILMRFGLVVFTAL--LSIWILPKQVWMDQLGRVSLLSGVLFIMLGLGSDGVPSLVQSRT  198 (397)
Q Consensus       121 ldPr~Kll~~l~~~i~~~~~~~~~~l~ll~~l~l--l~~~~lp~~~~~~~l~~l~~l~~~lfi~l~~~~~g~p~~~q~~~  198 (397)
                      +||++|+++.+.+++..+..+++..+.+...+.+  ...++.|.+.+.+.++.+..+.+++++...+...          
T Consensus         1 l~p~~Kl~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~f~~~~~~~~~~~~~----------   70 (198)
T TIGR02454         1 LDPRVKLISALALLVLAVLLPNPIALLILAIFALLLVGLAGIPLRILLKRLAVPIGFLLVGLLLLLFSNG----------   70 (198)
T ss_pred             CCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhcC----------
Confidence            6999999999999999988888875554444332  3346788887777766654444433333222100          


Q ss_pred             CCCcccCCCCCccccCCcceEEEEecc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhhccccccC
Q 015954          199 PPSAITGLPNLPISLGGYSYLIMKLGP-LQFTRKGLSVASTAACLTFTIFQSSSLCLATTTPEQLAFALRWFMLPLTYIG  277 (397)
Q Consensus       199 p~~~~~gl~~l~~~~~g~~~vl~~~G~-~~it~eGl~~al~~~lR~~~il~~~~ll~~TT~p~~l~~aL~~ll~PLr~lg  277 (397)
                                    .+|  ++++.+|+ +.+|.||+.+|..+.+|+++++.++.++..||+++|+.++++       ++|
T Consensus        71 --------------~~g--~~~~~~~~~~~it~~gl~~~~~~~lR~~~~~~~~~~~~~TT~~~~l~~~l~-------~l~  127 (198)
T TIGR02454        71 --------------TPG--EPLLVLGPLLSITREGLVYALTLALRSLTSLSAVYLLALTTPFPELLSALR-------RLG  127 (198)
T ss_pred             --------------CCC--ccHHHhhhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH-------HcC
Confidence                          112  44555665 899999999999999999999999999999999999999994       899


Q ss_pred             CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 015954          278 VPVAEIVLTLLLSLRFISLVFDEVRNVALGIVSRRINWRQLTMLETIDIFASYIRRIFKNIFGHAEQISQAMIVR  352 (397)
Q Consensus       278 vP~~~ial~l~LalRfIP~L~~e~~~I~~AqraRG~~~~~~~~~~r~~~~~~li~pL~~~sl~rAe~la~AMeaR  352 (397)
                      +|+ ++++++++++||||.+.||+++|++||++|+ +  +++..+++|.+.++++|++++++++|||+++|||+|
T Consensus       128 ~P~-~~~~~~~l~~Rfip~l~~e~~~i~~Aq~aR~-~--~~~~~~~~~~~~~l~~~Ll~~sl~ra~~l~~Am~aR  198 (198)
T TIGR02454       128 VPP-LLVEILLLTYRYLFVLLEELRRMLLAQRSRL-G--YRSLMRGWRSLGALAGALFIRSLERAERVYLAMESR  198 (198)
T ss_pred             CCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-C--CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            998 9999999999999999999999999999993 3  456779999999999999999999999999999998

This model represents the permease component of the cobalt-specific ABC transporter. This model finds permeases which are generally next to the other subunits of the complex (CbiN and CbiO) or the cobalamin biosynthesis protein CbiM which is a transmembrane protein which likely interacts with the complex in some manner. In genomes which possess all of these subunits the ATPase is most likely running in the direction of import (for the biosynthesis of coenzyme B12). In other genomes, this subunit may be involved in the export of cobalt and/or other closely related heavy metals.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	397
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.1 bits (103), Expect = 7e-05
 Identities = 57/350 (16%), Positives = 104/350 (29%), Gaps = 85/350 (24%)

Query: 44  RLYLPLSKTQKRILKKNGDFVIRASVRDKNNNNGASNWVNWLPTEAFSADKVFRLISTAT 103
           RL+  L   Q+ +++K   FV    V   N          +L       +   R  S  T
Sbjct: 66  RLFWTLLSKQEEMVQK---FV--EEVLRIN--------YKFL-MSPIKTE--QRQPSMMT 109

Query: 104 ASPIYQ---FIASPSTFL-HSVDARIKLVWLLALVLLPARSH---IL--MR-FG---LVV 150
              I Q          F  ++V +R++    L   LL  R     ++  +   G   + +
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNV-SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVAL 168

Query: 151 FTALLSIWIL---PKQV-WMDQLGRVSLLSGVLFIMLGLGSDGVPSLVQSRTPPSAITGL 206
               LS  +      ++ W++ L   +    VL ++  L     P+        S     
Sbjct: 169 -DVCLSYKVQCKMDFKIFWLN-LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS----- 221

Query: 207 PNLPISLG-GYSYLIMKLGPLQFTRKGLSVASTAACLTFTIFQSSSLCLATT-TPEQL-A 263
            N+ + +    + L   L    +            CL         L L      +   A
Sbjct: 222 -NIKLRIHSIQAELRRLLKSKPYEN----------CL---------LVLLNVQNAKAWNA 261

Query: 264 FALRWFMLPLTYIGVPVAEIVLTLLLSLRFISLVFDEVRNVALGIVSRRINWRQLTMLET 323
           F L   +L            + T     RF   V D +       +S   +   LT  E 
Sbjct: 262 FNLSCKIL------------LTT-----RFKQ-VTDFLSAATTTHISLDHHSMTLTPDEV 303

Query: 324 IDIFASYIRRIFKNIFGHAEQISQ---AMIVRGFRGDSSTHKIYSFSNSS 370
             +   Y+    +++       +    ++I    R   +T   +   N  
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCD 353

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00