Citrus Sinensis ID: 015966
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 397 | 2.2.26 [Sep-21-2011] | |||||||
| Q80UY1 | 400 | UPF0586 protein C9orf41 h | yes | no | 0.622 | 0.617 | 0.503 | 3e-70 | |
| Q5BJZ6 | 400 | UPF0586 protein C9orf41 h | yes | no | 0.622 | 0.617 | 0.503 | 5e-70 | |
| Q8N4J0 | 409 | UPF0586 protein C9orf41 O | yes | no | 0.622 | 0.603 | 0.496 | 1e-68 | |
| Q9I7X6 | 439 | UPF0586 protein CG11596 O | yes | no | 0.624 | 0.564 | 0.441 | 3e-58 | |
| Q9Y7J3 | 373 | UPF0586 protein C1778.07 | yes | no | 0.685 | 0.729 | 0.416 | 4e-55 | |
| Q54ST2 | 463 | UPF0586 protein OS=Dictyo | yes | no | 0.667 | 0.572 | 0.417 | 9e-54 | |
| P53934 | 400 | UPF0586 protein YNL092W O | yes | no | 0.571 | 0.567 | 0.322 | 2e-33 | |
| Q03648 | 457 | Uncharacterized protein Y | no | no | 0.443 | 0.385 | 0.290 | 2e-06 |
| >sp|Q80UY1|CI041_MOUSE UPF0586 protein C9orf41 homolog OS=Mus musculus PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 265 bits (678), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 129/256 (50%), Positives = 173/256 (67%), Gaps = 9/256 (3%)
Query: 144 DVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPN-RSKESPPACLVPGAGLGR 202
D+DK++ ++ VRDW+ GK ERD CYKPI++E+ FP R S LVPGAGLGR
Sbjct: 145 DMDKLKSTLKQFVRDWSETGKAERDACYKPIIKEIIKNFPKERWDPSKVNILVPGAGLGR 204
Query: 203 LALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPV 262
LA E++ LG+ QGNE+S++M+ S+F+LN ++ +YPWIH N+ +DQ+RP+
Sbjct: 205 LAWEVAMLGYACQGNEWSFFMLFSSNFVLNRCSEINKYKLYPWIHQFSNNRRSADQIRPI 264
Query: 263 SIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISR 322
PD+ P S FSM GDF E+Y S+ AWD + TCFFIDTAHN+++YI+ I R
Sbjct: 265 LFPDVDPHSLPPGSNFSMTAGDFQEIY---SECNAWDCIATCFFIDTAHNVIDYIDTIWR 321
Query: 323 ILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK-TIETTYT 381
ILK GG+WINLGPLLYHF +L +E+SIELS ED+K V L YGF+ E EK ++ +TYT
Sbjct: 322 ILKPGGIWINLGPLLYHFENL---ANELSIELSYEDIKNVVLQYGFQLEVEKESVLSTYT 378
Query: 382 TNPRSMMQVSFLPCTL 397
N SMM+ + C L
Sbjct: 379 VNDLSMMKY-YYECVL 393
|
Mus musculus (taxid: 10090) |
| >sp|Q5BJZ6|CI041_RAT UPF0586 protein C9orf41 homolog OS=Rattus norvegicus PE=2 SV=1 | Back alignment and function description |
|---|
Score = 265 bits (677), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 129/256 (50%), Positives = 172/256 (67%), Gaps = 9/256 (3%)
Query: 144 DVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPN-RSKESPPACLVPGAGLGR 202
D+DK++ ++ VRDW+ GK ERD CYKPI++E+ FP R S LVPGAGLGR
Sbjct: 145 DMDKLKSTLKQFVRDWSGTGKAERDACYKPIIKEIIKNFPKERWDPSKVNILVPGAGLGR 204
Query: 203 LALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPV 262
LA EI+ LG+ QGNE+S++M+ S+F+LN ++ +YPWIH N+ +DQ+RP+
Sbjct: 205 LAWEIAMLGYACQGNEWSFFMLFSSNFVLNRCSEVDKYKLYPWIHQFSNNRRSADQIRPI 264
Query: 263 SIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISR 322
PD+ P S FSM GDF E+Y S+ WD + TCFFIDTAHN+++YI+ I R
Sbjct: 265 FFPDVDPHSLPPGSNFSMTAGDFQEIY---SECNTWDCIATCFFIDTAHNVIDYIDTIWR 321
Query: 323 ILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK-TIETTYT 381
ILK GG+WINLGPLLYHF +L +E+SIELS ED+K V L YGF+ E EK ++ +TYT
Sbjct: 322 ILKPGGIWINLGPLLYHFENL---ANELSIELSYEDIKNVVLQYGFQLEVEKESVLSTYT 378
Query: 382 TNPRSMMQVSFLPCTL 397
N SMM+ + C L
Sbjct: 379 VNDLSMMKY-YYECVL 393
|
Rattus norvegicus (taxid: 10116) |
| >sp|Q8N4J0|CI041_HUMAN UPF0586 protein C9orf41 OS=Homo sapiens GN=C9orf41 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 260 bits (665), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 127/256 (49%), Positives = 172/256 (67%), Gaps = 9/256 (3%)
Query: 144 DVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPN-RSKESPPACLVPGAGLGR 202
D+DK++ ++ VRDW+ GK ERD CY+PI++E+ FP R S LVPGAGLGR
Sbjct: 154 DMDKLKSTLKQFVRDWSETGKAERDACYQPIIKEILKNFPKERWDPSKVNILVPGAGLGR 213
Query: 203 LALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPV 262
LA EI+ LG+ QGNE+S++M+ S+F+LN ++ +YPWIH N+ +DQ+RP+
Sbjct: 214 LAWEIAMLGYACQGNEWSFFMLFSSNFVLNRCSEINKYKLYPWIHQFSNNRRSADQIRPI 273
Query: 263 SIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISR 322
PD+ P S FSM GDF E+Y S+ WD + TCFFIDTAHN+++YI+ I +
Sbjct: 274 FFPDVDPHSLPPGSNFSMTAGDFQEIY---SECNTWDCIATCFFIDTAHNVIDYIDTIWK 330
Query: 323 ILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK-TIETTYT 381
ILK GG+WINLGPLLYHF +L +E+SIELS ED+K V L YGF+ E EK ++ +TYT
Sbjct: 331 ILKPGGIWINLGPLLYHFENL---ANELSIELSYEDIKNVVLQYGFKVEVEKESVLSTYT 387
Query: 382 TNPRSMMQVSFLPCTL 397
N SMM+ + C L
Sbjct: 388 VNDLSMMKY-YYECVL 402
|
Homo sapiens (taxid: 9606) |
| >sp|Q9I7X6|U586_DROME UPF0586 protein CG11596 OS=Drosophila melanogaster GN=CG11596 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 226 bits (575), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 113/256 (44%), Positives = 160/256 (62%), Gaps = 8/256 (3%)
Query: 139 NVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKE-SPPACLVPG 197
NV D+D+ + ++ I RDW+ EG ER+Q YKPI++ + A F + E LVPG
Sbjct: 119 NVRHGDMDQAQSTLKLIARDWSTEGALEREQSYKPIIDSIVAYFKHSDFELKDIKILVPG 178
Query: 198 AGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSD 257
AGLGRL E++ LG+ +GNEFSY+M+I S+F+LN + ++ +YPW+H N+L D
Sbjct: 179 AGLGRLTYELACLGYSCEGNEFSYFMLIASNFVLNLCDNENKYVLYPWVHQYVNNLRRED 238
Query: 258 QLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYI 317
Q+ PV PD+ P F + GDF+EVY P+ A++ V TCFFID A+N++++I
Sbjct: 239 QVAPVRFPDVCPLKNPPKGHFEIAAGDFLEVYKTPN---AYNCVATCFFIDCANNVIDFI 295
Query: 318 EIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT-I 376
I +IL GG+W+NLGPLLYHF+D+ GQ SIE + ED+ + GF EK +T I
Sbjct: 296 RTIYKILVPGGIWVNLGPLLYHFSDVSGQN---SIEPAFEDLCIIMESVGFVIEKSRTGI 352
Query: 377 ETTYTTNPRSMMQVSF 392
T Y NP SM Q +
Sbjct: 353 RTKYAQNPSSMKQSEY 368
|
Drosophila melanogaster (taxid: 7227) |
| >sp|Q9Y7J3|YOI7_SCHPO UPF0586 protein C1778.07 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1778.07 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 215 bits (548), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 118/283 (41%), Positives = 166/283 (58%), Gaps = 11/283 (3%)
Query: 122 GNASSPA-CDWLDPSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDA 180
NA+ P C D + +V + + KV ++ I RDW+ E ER Y P +EEL++
Sbjct: 77 ANAAIPVFCSDFDQNELFHVNVDMMQKVSSTLKQIARDWSTECVEERRTTYAPFIEELNS 136
Query: 181 LFPNRS-KESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGE 239
LFP+ S S LVPG+GLGRLA +I+ GF QGNEFSY+M++ S FILN + +
Sbjct: 137 LFPSDSIDRSKIRVLVPGSGLGRLAFDIAVEGFACQGNEFSYFMLLTSHFILNCVKQENQ 196
Query: 240 WNIYPWIHSNCNSLSDSDQLRPVSIPDIHPAS-AGITEGFSMCGGDFVEVYSDPSQVGAW 298
+ +YP+IHS N + DQ+R ++IPD P+ ++ FSM GDF+EVY ++
Sbjct: 197 FLVYPYIHSFSNHVMRDDQVRSLNIPDAVPSQYLRNSQNFSMAAGDFLEVYGTEESRDSF 256
Query: 299 DAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMS------- 351
V TCFFIDT NI++Y++ I L DGG WINLGPLLYHF G + S
Sbjct: 257 QVVATCFFIDTTKNILDYLDTIKNCLVDGGYWINLGPLLYHFES-EGTSNSNSDSQQQPF 315
Query: 352 IELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQVSFLP 394
+EL+LE + V GFE K +++TTY + RSM++ + P
Sbjct: 316 VELTLEQLFYVMDSMGFEVLKHNSVDTTYMGDKRSMLEWIYHP 358
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q54ST2|U586_DICDI UPF0586 protein OS=Dictyostelium discoideum GN=DDB_G0282239 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 211 bits (536), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 122/292 (41%), Positives = 178/292 (60%), Gaps = 27/292 (9%)
Query: 110 NQSCSNDFTDSNGNASSPACDWLDPSI--QLNVPLADVDKVRCIIRNIVRDWAAEGKTER 167
N+ C N F+ S+ N+++ +DP+ + + +D+++ IR +VR+W+ EGK ER
Sbjct: 171 NEHC-NIFSQSSDNSANSE-RIVDPTNLDHIKIDYFMMDQLKSTIRQLVREWSEEGKLER 228
Query: 168 DQCYKPILEELDAL-----FPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYY 222
DQ ++PI ++L + F RSK PGAGLGRL LEI+ LGF SQG E+S+
Sbjct: 229 DQAFEPIKQQLLEIYGHIPFQERSK---IRVYSPGAGLGRLCLEIASLGFSSQGIEYSFM 285
Query: 223 MMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI-----HPASAGITEG 277
M+I S+F+LN E E+ I+P+IH N L D DQLR V+IPD+ P + E
Sbjct: 286 MLIVSNFMLNKVEKINEFKIHPYIHQTVNVLRDIDQLRTVTIPDVLSSELLPKNNPALE- 344
Query: 278 FSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLL 337
FSM GDF + + S +D + TCFFIDTA NI+EY++ IS+ILK GG WIN GPLL
Sbjct: 345 FSMSAGDFTKNIEENS----FDCICTCFFIDTAPNILEYVDCISKILKPGGTWINFGPLL 400
Query: 338 YHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQ 389
YH A + + SIELS E ++ + F+F+KE+ + Y +N +S+++
Sbjct: 401 YHHA-----KKKDSIELSYEQLRYLICKKQFQFKKEEIRDAEYCSNQKSLLR 447
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|P53934|YNJ2_YEAST UPF0586 protein YNL092W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YNL092W PE=1 SV=1 | Back alignment and function description |
|---|
Score = 144 bits (362), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 136/273 (49%), Gaps = 46/273 (16%)
Query: 144 DVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRL 203
D+ K ++ + R+W+AE +ER+ ++ L L P ++ L+PG G GRL
Sbjct: 98 DMSKTCSLLTQVYREWSAEAISERNCLNSRLVPFLKTLSPPKAD-----ILIPGCGTGRL 152
Query: 204 ALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVS 263
+++S +G+ +GNEFSY+M++ S ++LN + IYP+IH + DQL P+
Sbjct: 153 LVDLSRMGYNCEGNEFSYHMLLVSQYMLNAGLLQNQIIIYPFIHCFSHWKKIEDQLSPIK 212
Query: 264 IPDIHPASAGITEG-FSMCGGDFVEVY--------------------SDPSQVGAWDAVV 302
+PDI S+ G S+C G FV+ Y S + D VV
Sbjct: 213 VPDIEAWSSNKGMGSMSICAGSFVDCYGRNQGTKISSHYTFSRRMQLSRAKAENSKDVVV 272
Query: 303 TCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDE------------- 349
T FFIDT NI++Y++ I +LK GG+W N GPLLYHF + +G E
Sbjct: 273 TNFFIDTGSNILDYLDTIGHVLKPGGIWCNFGPLLYHFENDHGVETTYEVNPYSGFQDKI 332
Query: 350 ------MSIELSLEDVKRVAL-HYGFEFEKEKT 375
M +ELS +D+ +A H FE + ++
Sbjct: 333 NDYTPLMGLELSSDDIISIATNHLDFELIRRES 365
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q03648|YM59_YEAST Uncharacterized protein YMR209C OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=YMR209C PE=1 SV=1 | Back alignment and function description |
|---|
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/196 (29%), Positives = 93/196 (47%), Gaps = 20/196 (10%)
Query: 152 IRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLV-PGAGLGRLA--LEIS 208
+ ++ RD+++ ERD I+ ++ + +V PGAG+G L+ L +
Sbjct: 210 LAHLCRDFSSYYSVERDPLQNFIISRINHHVISAGDMKEKILIVTPGAGVGGLSHTLATT 269
Query: 209 HLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS-NCNSLSDSDQLRPVSIPDI 267
E S M IC+ F L E + I P++ +C ++ D +QLR +S D+
Sbjct: 270 FPKIQVDSIELSALMYICNLFAL---EYKHDVKIRPFVQQYSCQTVFD-NQLRSLS-ADL 324
Query: 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTAHNIVEY---IEIISR 322
+ G GDF YS S+ +D ++ C +FIDTA N+ EY IE + +
Sbjct: 325 --SKVGHRSNLDPLWGDFTR-YSPISK--DYDKIIICSAYFIDTAENMFEYLSSIEALKK 379
Query: 323 ILKDGGVWINLGPLLY 338
K+ W+N+GPL Y
Sbjct: 380 YCKELH-WVNVGPLKY 394
|
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 397 | ||||||
| 296089545 | 498 | unnamed protein product [Vitis vinifera] | 0.987 | 0.787 | 0.711 | 1e-165 | |
| 356577478 | 627 | PREDICTED: uncharacterized protein LOC10 | 0.984 | 0.623 | 0.722 | 1e-162 | |
| 356551269 | 456 | PREDICTED: UPF0586 protein C9orf41 homol | 0.901 | 0.785 | 0.694 | 1e-155 | |
| 449463611 | 492 | PREDICTED: UPF0586 protein C9orf41 homol | 0.962 | 0.776 | 0.705 | 1e-155 | |
| 297822971 | 508 | hypothetical protein ARALYDRAFT_902264 [ | 0.949 | 0.742 | 0.663 | 1e-145 | |
| 30685202 | 504 | N2227-like domain-containing protein [Ar | 0.957 | 0.753 | 0.650 | 1e-143 | |
| 224086635 | 281 | predicted protein [Populus trichocarpa] | 0.667 | 0.943 | 0.905 | 1e-142 | |
| 359493498 | 611 | PREDICTED: uncharacterized protein LOC10 | 0.609 | 0.396 | 0.870 | 1e-141 | |
| 238479409 | 571 | N2227-like domain-containing protein [Ar | 0.949 | 0.660 | 0.559 | 1e-134 | |
| 218197084 | 494 | hypothetical protein OsI_20588 [Oryza sa | 0.962 | 0.773 | 0.609 | 1e-133 |
| >gi|296089545|emb|CBI39364.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust.
Identities = 289/406 (71%), Positives = 324/406 (79%), Gaps = 14/406 (3%)
Query: 1 MNSYFIFAMLQAFDPPLDMSQDMDICEDSHVSHTHYDNQSDG-RNVCSGHSTSSSGRMCC 59
+NS+FIF MLQAF+PPLDMSQD D+CE+ H+ + D+ G RN+C + S+SGR+
Sbjct: 81 VNSFFIFNMLQAFEPPLDMSQDTDMCENPHLENALDDHLDSGERNICPCEAASTSGRISF 140
Query: 60 SKGDHADCNEQSKVVETAKEMTTNEEEETEGPIEYKTASCPGKLENREETNQSCSND--- 116
+ D A +S + + E N+E TE E C N ET+Q+ S+D
Sbjct: 141 PQSDQASYG-KSDITCKSPEGVNNKELGTESCCESGPGICNAYPGNNRETDQAGSSDVKI 199
Query: 117 ---------FTDSNGNASSPACDWLDPSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTER 167
F DSNGN SS +WLDPS QLNVPL DVDKVRCIIRNIVRDWAAEG+ ER
Sbjct: 200 NNDEATPYSFADSNGNVSSSTHEWLDPSFQLNVPLVDVDKVRCIIRNIVRDWAAEGQKER 259
Query: 168 DQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICS 227
DQCYKPILEELD LFPNRSK+ PP+CLVPGAGLGRLALEIS LGFISQGNEFSYYMMICS
Sbjct: 260 DQCYKPILEELDGLFPNRSKDRPPSCLVPGAGLGRLALEISCLGFISQGNEFSYYMMICS 319
Query: 228 SFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVE 287
SFILN+ +TA EW IYPWIHSNCNSLS++DQLRPVSIPD+HPASAGITEGFSMCGGDFVE
Sbjct: 320 SFILNNAQTAEEWTIYPWIHSNCNSLSENDQLRPVSIPDMHPASAGITEGFSMCGGDFVE 379
Query: 288 VYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 347
VYSDPSQ+G WDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN GPLLYHFAD+YGQE
Sbjct: 380 VYSDPSQIGVWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINFGPLLYHFADMYGQE 439
Query: 348 DEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQVSFL 393
DEMSIELSLEDVK+VALHYGF+ EKE+TIETTYTTNPRSMMQ +
Sbjct: 440 DEMSIELSLEDVKKVALHYGFQMEKERTIETTYTTNPRSMMQNRYF 485
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356577478|ref|XP_003556852.1| PREDICTED: uncharacterized protein LOC100791662 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust.
Identities = 287/397 (72%), Positives = 322/397 (81%), Gaps = 6/397 (1%)
Query: 1 MNSYFIFAMLQAFDPPLDMSQDMDICEDSHVSHTHYDNQ-SDGRNVCSGHSTSSSGRMCC 59
MN++FIF MLQAF+PPLDMSQD+D ED H T D+ S+G + CS S R+ C
Sbjct: 215 MNTHFIFGMLQAFEPPLDMSQDVDFSEDPHPESTQKDHLVSEGISACSCESVPV--RITC 272
Query: 60 SKGDHADCNEQ-SKVVETAKEMTTNEEEETEGPIEYKTASCPGKLENREETNQSCSNDFT 118
S D C E + + +M +NEE + E + T S + + +ET++ C +
Sbjct: 273 SVSDQHRCVEGGNHTCISQAQMHSNEEVDIESCHQSNTGSHSPSMIHPKETSEYCGSPIA 332
Query: 119 DSNGNA--SSPACDWLDPSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILE 176
DSNGN +S WLDPS++LNVPL DVDKVRCIIRNIVRDWAAEGK ERDQCY PIL+
Sbjct: 333 DSNGNVPVTSSQQQWLDPSLKLNVPLVDVDKVRCIIRNIVRDWAAEGKNERDQCYSPILD 392
Query: 177 ELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTET 236
EL+ LFPNRSK+SPPACLVPGAGLGRLALEIS LGFISQGNEFSYYMMICSSFILNH++T
Sbjct: 393 ELNMLFPNRSKDSPPACLVPGAGLGRLALEISCLGFISQGNEFSYYMMICSSFILNHSQT 452
Query: 237 AGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVG 296
AGEW IYPWIHSNCNSLSDSDQLRPVSIPD+HPASAGITEGFSMCGGDFVEVYSD SQVG
Sbjct: 453 AGEWTIYPWIHSNCNSLSDSDQLRPVSIPDMHPASAGITEGFSMCGGDFVEVYSDSSQVG 512
Query: 297 AWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSL 356
AWDAVVTCFFIDTAHNIVEYIEIIS+ILK+GGVWINLGPLLYHFAD+YGQ+DEMSIELSL
Sbjct: 513 AWDAVVTCFFIDTAHNIVEYIEIISKILKEGGVWINLGPLLYHFADMYGQDDEMSIELSL 572
Query: 357 EDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQVSFL 393
EDVKRVALHYGFE EKE+TIETTYT N RSMMQ +
Sbjct: 573 EDVKRVALHYGFELEKERTIETTYTANSRSMMQNRYF 609
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356551269|ref|XP_003543999.1| PREDICTED: UPF0586 protein C9orf41 homolog [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 555 bits (1429), Expect = e-155, Method: Compositional matrix adjust.
Identities = 277/399 (69%), Positives = 304/399 (76%), Gaps = 41/399 (10%)
Query: 1 MNSYFIFAMLQAFDPPLDMSQDMDICEDSHVSHTHYDNQ-SDGRNVCSGHSTSSSG---R 56
MN++FIF+MLQAF+PPLDMSQD D ED H D+ S+G + CS S G R
Sbjct: 75 MNTHFIFSMLQAFEPPLDMSQDADFSEDPHPESAQKDHLVSEGISACSCESAPEVGIESR 134
Query: 57 MCCSKGDHADCNEQSKVVETAKEMTTNEEEETEGPIEYKTASCPGKLENREETNQSCSND 116
+ G+H+ +L + +ET + C +
Sbjct: 135 HQSNTGNHSP-----------------------------------RLIHTKETREYCGSP 159
Query: 117 FTDSNGNA--SSPACDWLDPSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPI 174
DS GN +S WL PS++LNVPL D DKVRCIIRNIVRDWAAEGK ERDQCY PI
Sbjct: 160 IADSKGNVPDTSSQQQWLAPSLKLNVPLVDADKVRCIIRNIVRDWAAEGKKERDQCYNPI 219
Query: 175 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHT 234
LEEL+ LFPNRSKESPPACLVPGAGLGRLALEIS LGFISQGNEFSYYMMICSSFILNH+
Sbjct: 220 LEELNMLFPNRSKESPPACLVPGAGLGRLALEISCLGFISQGNEFSYYMMICSSFILNHS 279
Query: 235 ETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQ 294
+TAGEW IYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD SQ
Sbjct: 280 QTAGEWTIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDSSQ 339
Query: 295 VGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIEL 354
+GAWDAVVTCFFIDTAHNIVEYIEIIS+ILKDGGVWINLGPLLYHFAD+YGQ+DEMSIEL
Sbjct: 340 IGAWDAVVTCFFIDTAHNIVEYIEIISKILKDGGVWINLGPLLYHFADMYGQDDEMSIEL 399
Query: 355 SLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQVSFL 393
SLEDVKRVA HYGFEFE E+TIETTYT N RSMMQ +
Sbjct: 400 SLEDVKRVAFHYGFEFENERTIETTYTANSRSMMQNRYF 438
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449463611|ref|XP_004149525.1| PREDICTED: UPF0586 protein C9orf41 homolog [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust.
Identities = 285/404 (70%), Positives = 319/404 (78%), Gaps = 22/404 (5%)
Query: 2 NSYFIFAMLQAFDPPLDMSQDMDICEDSHVSHTHYDN-------QSDGR------NVCSG 48
NSYFIF MLQAF+PPLDMSQD D C+ S+ H H D ++G NVCSG
Sbjct: 80 NSYFIFNMLQAFEPPLDMSQDTDCCDGSYPDHAHDDQFCCRGERNANGNLCSRESNVCSG 139
Query: 49 HSTSSSGRMCCSKGDHADCNEQSKVVETAKEMTTNEEEETEGPIEYKTASCPGKLENREE 108
TS+SGRMC + C E + ++ K T N+E E + LE +E
Sbjct: 140 EPTSTSGRMCSLESKQICCPEGAS--DSPKASTINQEVEN-------GVNHDQHLEEKEV 190
Query: 109 TNQSCSNDFTDSNGNASSPACDWLDPSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTERD 168
T++ + +D NGN S + +WLDPS+QLNVPL DVDKVRCIIRNIVRDWA EG+ ER+
Sbjct: 191 TDKHSGHCASDCNGNDCSSSHEWLDPSLQLNVPLVDVDKVRCIIRNIVRDWAEEGQKERE 250
Query: 169 QCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228
QCYKPILEEL +LFP+R KESPPACLVPGAGLGRLALEIS LGFISQGNEFSYYMMICSS
Sbjct: 251 QCYKPILEELHSLFPDRKKESPPACLVPGAGLGRLALEISCLGFISQGNEFSYYMMICSS 310
Query: 229 FILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEV 288
FILNHT+ GEW IYPWIHSN NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEV
Sbjct: 311 FILNHTQKVGEWTIYPWIHSNSNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEV 370
Query: 289 YSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQED 348
YSDPSQVG WDAVVTCFFIDTAHNI+EYIE+IS+ILKDGGVWINLGPLLYHFAD+YGQED
Sbjct: 371 YSDPSQVGLWDAVVTCFFIDTAHNIIEYIEVISKILKDGGVWINLGPLLYHFADMYGQED 430
Query: 349 EMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQVSF 392
EMSIE SLEDVK++ LHYGF FEKE+T+ETTYTTNPRSMMQ +
Sbjct: 431 EMSIEPSLEDVKKIILHYGFVFEKERTVETTYTTNPRSMMQNRY 474
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297822971|ref|XP_002879368.1| hypothetical protein ARALYDRAFT_902264 [Arabidopsis lyrata subsp. lyrata] gi|297325207|gb|EFH55627.1| hypothetical protein ARALYDRAFT_902264 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust.
Identities = 264/398 (66%), Positives = 304/398 (76%), Gaps = 21/398 (5%)
Query: 2 NSYFIFAMLQAFDPPLDMSQDMDICEDSHVS---HTHYDNQSDGRNVCSGHSTSSSGRMC 58
NSYFIF MLQAF+PP+D+SQ++D CEDS++ H Y + C T+S C
Sbjct: 110 NSYFIFNMLQAFEPPIDLSQELDGCEDSNLECAPHERYTLDERHDSSCQPALTNS----C 165
Query: 59 CSKGDHADCNEQSKVVETAKEMTTNEEEETEGPIEYKTASCPGKLENREETNQSCSND-- 116
K E+SK + + EE + + E S + TN++C D
Sbjct: 166 TYK-------EESKHIREPITGVSIEELQRK---EAHDHSSKDDSADARITNKTCECDGG 215
Query: 117 -FTDSNGNASSPACDWLDPSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPIL 175
+G+ S + DWLD S+Q +VPL DVDKVRCIIRNIVRDWAAEG+ ERDQCYKPIL
Sbjct: 216 QLNHDHGSVSFSSHDWLDSSLQTHVPLVDVDKVRCIIRNIVRDWAAEGQRERDQCYKPIL 275
Query: 176 EELDALFPNRSKES-PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHT 234
EELD+LFP+RSKES PPACLVPGAGLGRLALEIS LGFISQGNEFSYYMMICSSFILN++
Sbjct: 276 EELDSLFPDRSKESTPPACLVPGAGLGRLALEISCLGFISQGNEFSYYMMICSSFILNYS 335
Query: 235 ETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQ 294
+ GEW IYPWIHSNCNSLSD+DQLRP++IPDIHPASAGITEGFSMCGGDFVEVY++ S
Sbjct: 336 QVPGEWTIYPWIHSNCNSLSDNDQLRPIAIPDIHPASAGITEGFSMCGGDFVEVYNESSH 395
Query: 295 VGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIEL 354
G WDAVVTCFFIDTAHN++EYIE IS+ILKDGGVWINLGPLLYHFAD YG E+EMSIEL
Sbjct: 396 AGMWDAVVTCFFIDTAHNVIEYIETISKILKDGGVWINLGPLLYHFADTYGHENEMSIEL 455
Query: 355 SLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQVSF 392
SLEDVKRVA HYGF EKE+TIETTYTTNPR+MMQ +
Sbjct: 456 SLEDVKRVASHYGFVIEKERTIETTYTTNPRAMMQNRY 493
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|30685202|ref|NP_850185.1| N2227-like domain-containing protein [Arabidopsis thaliana] gi|20259498|gb|AAM13869.1| unknown protein [Arabidopsis thaliana] gi|22136766|gb|AAM91702.1| unknown protein [Arabidopsis thaliana] gi|330253550|gb|AEC08644.1| N2227-like domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 513 bits (1322), Expect = e-143, Method: Compositional matrix adjust.
Identities = 257/395 (65%), Positives = 299/395 (75%), Gaps = 15/395 (3%)
Query: 2 NSYFIFAMLQAFDPPLDMSQDMDICEDSHVS---HTHYDNQSDGRNVCSGHSTSSSGRMC 58
NSYFIF MLQAF+PP+D+SQ++D CEDS++ H Y + C T+S C
Sbjct: 105 NSYFIFNMLQAFEPPIDLSQELDGCEDSNLDCAPHERYTLDERHDSSCQPALTNS----C 160
Query: 59 CSKGDHADCNEQSKVVETAKEMTTNEEEETEGPIEYKTASCPGKLENREETNQSCSNDFT 118
K E+SK + + EE + + ++ ++T
Sbjct: 161 TYK-------EESKHIRDPITGVSIEELQRKEAHDHSPKDDSADTRINDKTCDCHEGQLN 213
Query: 119 DSNGNASSPACDWLDPSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEEL 178
+G+ S + DWLD S+Q +VPL DVDKVRCIIRNIVRDWAAEG+ ERDQCYKPILEEL
Sbjct: 214 HDHGSVSFSSHDWLDSSLQTHVPLVDVDKVRCIIRNIVRDWAAEGQRERDQCYKPILEEL 273
Query: 179 DALFPNRSKES-PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETA 237
D+LFP+R KES PPACLVPGAGLGRLALEIS LGFISQGNEFSYYMMICSSFILN+T+
Sbjct: 274 DSLFPDRLKESTPPACLVPGAGLGRLALEISCLGFISQGNEFSYYMMICSSFILNYTQVP 333
Query: 238 GEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGA 297
GEW IYPWIHSNCNSLSD+DQLRP++IPDIHPASAGITEGFSMCGGDFVEVY++ S G
Sbjct: 334 GEWTIYPWIHSNCNSLSDNDQLRPIAIPDIHPASAGITEGFSMCGGDFVEVYNESSHAGM 393
Query: 298 WDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLE 357
WDAVVTCFFIDTAHN++EYI+ IS+ILKDGGVWINLGPLLYHFAD YG E+EMSIELSLE
Sbjct: 394 WDAVVTCFFIDTAHNVIEYIQTISKILKDGGVWINLGPLLYHFADTYGHENEMSIELSLE 453
Query: 358 DVKRVALHYGFEFEKEKTIETTYTTNPRSMMQVSF 392
DVKRVA H+GF EKE+TIETTYTTNPR+MMQ +
Sbjct: 454 DVKRVASHFGFVIEKERTIETTYTTNPRAMMQNRY 488
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224086635|ref|XP_002307920.1| predicted protein [Populus trichocarpa] gi|222853896|gb|EEE91443.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 240/265 (90%), Positives = 251/265 (94%)
Query: 130 DWLDPSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKES 189
DWLDPS+QL VP+ DVDKVRCIIRNIVRDWAAEG+ ERDQCYKPILEEL++LFP+RS ES
Sbjct: 9 DWLDPSLQLRVPMVDVDKVRCIIRNIVRDWAAEGQKERDQCYKPILEELNSLFPDRSNES 68
Query: 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249
PP CLVPGAGLGRLALEIS LGF+SQGNEFSYYMMICSSFILN TETAGEW IYPWIHSN
Sbjct: 69 PPTCLVPGAGLGRLALEISCLGFVSQGNEFSYYMMICSSFILNQTETAGEWTIYPWIHSN 128
Query: 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT 309
CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVG WDAVVTCFFIDT
Sbjct: 129 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGVWDAVVTCFFIDT 188
Query: 310 AHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFE 369
AHNIVEYIEIISRILKDGGVWINLGPLLYHFAD+YGQEDEMSIELSLEDVKRVAL+YGFE
Sbjct: 189 AHNIVEYIEIISRILKDGGVWINLGPLLYHFADVYGQEDEMSIELSLEDVKRVALNYGFE 248
Query: 370 FEKEKTIETTYTTNPRSMMQVSFLP 394
EKE TIETTYTTNPR+MMQ + P
Sbjct: 249 VEKESTIETTYTTNPRAMMQNRYFP 273
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359493498|ref|XP_003634616.1| PREDICTED: uncharacterized protein LOC100852521 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 508 bits (1309), Expect = e-141, Method: Compositional matrix adjust.
Identities = 236/271 (87%), Positives = 251/271 (92%)
Query: 123 NASSPACDWLDPSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALF 182
SS +WLDPS QLNVPL DVDKVRCIIRNIVRDWAAEG+ ERDQCYKPILEELD LF
Sbjct: 328 KVSSSTHEWLDPSFQLNVPLVDVDKVRCIIRNIVRDWAAEGQKERDQCYKPILEELDGLF 387
Query: 183 PNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNI 242
PNRSK+ PP+CLVPGAGLGRLALEIS LGFISQGNEFSYYMMICSSFILN+ +TA EW I
Sbjct: 388 PNRSKDRPPSCLVPGAGLGRLALEISCLGFISQGNEFSYYMMICSSFILNNAQTAEEWTI 447
Query: 243 YPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVV 302
YPWIHSNCNSLS++DQLRPVSIPD+HPASAGITEGFSMCGGDFVEVYSDPSQ+G WDAVV
Sbjct: 448 YPWIHSNCNSLSENDQLRPVSIPDMHPASAGITEGFSMCGGDFVEVYSDPSQIGVWDAVV 507
Query: 303 TCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRV 362
TCFFIDTAHNIVEYIEIISRILKDGGVWIN GPLLYHFAD+YGQEDEMSIELSLEDVK+V
Sbjct: 508 TCFFIDTAHNIVEYIEIISRILKDGGVWINFGPLLYHFADMYGQEDEMSIELSLEDVKKV 567
Query: 363 ALHYGFEFEKEKTIETTYTTNPRSMMQVSFL 393
ALHYGF+ EKE+TIETTYTTNPRSMMQ +
Sbjct: 568 ALHYGFQMEKERTIETTYTTNPRSMMQNRYF 598
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|238479409|ref|NP_001154543.1| N2227-like domain-containing protein [Arabidopsis thaliana] gi|330253551|gb|AEC08645.1| N2227-like domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust.
Identities = 257/459 (55%), Positives = 298/459 (64%), Gaps = 82/459 (17%)
Query: 2 NSYFIFAMLQAFDPPLDMSQDMDICEDSHVS---HTHYDNQSDGRNVCSGHSTSSSGRMC 58
NSYFIF MLQAF+PP+D+SQ++D CEDS++ H Y + C T+S C
Sbjct: 105 NSYFIFNMLQAFEPPIDLSQELDGCEDSNLDCAPHERYTLDERHDSSCQPALTNS----C 160
Query: 59 CSKGDHADCNEQSKVVETAKEMTTNEEEETEGPIEYKTASCPGKLENREETNQSCSNDFT 118
K E+SK + + EE + + ++ ++T
Sbjct: 161 TYK-------EESKHIRDPITGVSIEELQRKEAHDHSPKDDSADTRINDKTCDCHEGQLN 213
Query: 119 DSNGNASSPACDWLDPSIQLNVPLADVDK------------------------------- 147
+G+ S + DWLD S+Q +VPL DVDK
Sbjct: 214 HDHGSVSFSSHDWLDSSLQTHVPLVDVDKRETKIIMCHVRTYSQSLLVPLGSLVSYEGWF 273
Query: 148 --------------------VRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSK 187
VRCIIRNIVRDWAAEG+ ERDQCYKPILEELD+LFP+R K
Sbjct: 274 AHVALHGEVNPVELKCTFLHVRCIIRNIVRDWAAEGQRERDQCYKPILEELDSLFPDRLK 333
Query: 188 ES-----------------PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFI 230
ES PPACLVPGAGLGRLALEIS LGFISQGNEFSYYMMICSSFI
Sbjct: 334 ESTCCIHSPYKVDYMICSTPPACLVPGAGLGRLALEISCLGFISQGNEFSYYMMICSSFI 393
Query: 231 LNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS 290
LN+T+ GEW IYPWIHSNCNSLSD+DQLRP++IPDIHPASAGITEGFSMCGGDFVEVY+
Sbjct: 394 LNYTQVPGEWTIYPWIHSNCNSLSDNDQLRPIAIPDIHPASAGITEGFSMCGGDFVEVYN 453
Query: 291 DPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEM 350
+ S G WDAVVTCFFIDTAHN++EYI+ IS+ILKDGGVWINLGPLLYHFAD YG E+EM
Sbjct: 454 ESSHAGMWDAVVTCFFIDTAHNVIEYIQTISKILKDGGVWINLGPLLYHFADTYGHENEM 513
Query: 351 SIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQ 389
SIELSLEDVKRVA H+GF EKE+TIETTYTTNPR+MMQ
Sbjct: 514 SIELSLEDVKRVASHFGFVIEKERTIETTYTTNPRAMMQ 552
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|218197084|gb|EEC79511.1| hypothetical protein OsI_20588 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
|---|
Score = 482 bits (1241), Expect = e-133, Method: Compositional matrix adjust.
Identities = 253/415 (60%), Positives = 296/415 (71%), Gaps = 33/415 (7%)
Query: 1 MNSYFIFAMLQAFDPPLDMSQDMDI----CEDSHVSHTHYD-NQSDGRNVCSGHSTSSSG 55
MN+ FI ML+AF+PP DMSQ +D+ C ++ H H D S R C S S S
Sbjct: 70 MNASFIMDMLEAFEPPFDMSQHIDMDGHDCAENMHGHCHADCAHSVDRGDCFRSSISVSN 129
Query: 56 RMC-----CSKGDHADCNEQSKVVETAKEMTTNEEEETEGPIEYKTASCPGKLENREETN 110
C + D K E ++E T N++E + +E + KL + +
Sbjct: 130 SELHEPDGCPRKD-------DKTHELSRE-TDNKDEVVD--MESCSRPVGDKLGASQVED 179
Query: 111 QSCSNDFT-DSNGNASSPAC------------DWLDPSIQLNVPLADVDKVRCIIRNIVR 157
+SC+ D D+ N C ++ PS+QLNVP DVDKVRCIIRNIVR
Sbjct: 180 KSCNGDKAMDAAANCQDTDCVACSADENVIPQQFMAPSLQLNVPPIDVDKVRCIIRNIVR 239
Query: 158 DWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGN 217
DWA EG+ ERD+CYKPILEEL+ LFPNRSKE PP+CLVPGAGLGRLALEIS LGF+SQGN
Sbjct: 240 DWAQEGQKERDECYKPILEELNRLFPNRSKERPPSCLVPGAGLGRLALEISTLGFVSQGN 299
Query: 218 EFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEG 277
EFSYYMMICSSFILNHT+ EW IYPWIHSNCNSLSD+DQLRPVS PDIHP+S+GITEG
Sbjct: 300 EFSYYMMICSSFILNHTQETNEWTIYPWIHSNCNSLSDNDQLRPVSFPDIHPSSSGITEG 359
Query: 278 FSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLL 337
FSMC GDFVEVY++ SQ +WDAVVTCFF+DTAHNIVEYIEIIS++LKDGGVWINLGPLL
Sbjct: 360 FSMCAGDFVEVYNEESQESSWDAVVTCFFLDTAHNIVEYIEIISKVLKDGGVWINLGPLL 419
Query: 338 YHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQVSF 392
YHFAD YG +D+MSIELSLEDVKRVA HYGF E EK I+TTYT N +SMMQ +
Sbjct: 420 YHFADSYGPDDDMSIELSLEDVKRVAYHYGFVMEVEKMIDTTYTANMKSMMQNQY 474
|
Source: Oryza sativa Indica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 397 | ||||||
| TAIR|locus:2045542 | 571 | AT2G32170 [Arabidopsis thalian | 0.506 | 0.352 | 0.791 | 5.7e-123 | |
| TAIR|locus:2045547 | 463 | AT2G32160 "AT2G32160" [Arabido | 0.735 | 0.630 | 0.691 | 3.3e-115 | |
| ZFIN|ZDB-GENE-050306-48 | 373 | zgc:112985 "zgc:112985" [Danio | 0.604 | 0.643 | 0.508 | 3.7e-64 | |
| MGI|MGI:1914633 | 400 | 2410127L17Rik "RIKEN cDNA 2410 | 0.622 | 0.617 | 0.476 | 3.4e-61 | |
| FB|FBgn0023522 | 439 | CG11596 [Drosophila melanogast | 0.624 | 0.564 | 0.414 | 1.7e-50 | |
| ASPGD|ASPL0000056516 | 418 | AN0865 [Emericella nidulans (t | 0.503 | 0.478 | 0.502 | 3.6e-50 | |
| POMBASE|SPBC1778.07 | 373 | SPBC1778.07 "methyltransferase | 0.682 | 0.726 | 0.397 | 4.2e-47 | |
| DICTYBASE|DDB_G0282239 | 463 | DDB_G0282239 "N2227-like domai | 0.602 | 0.516 | 0.434 | 1.4e-46 | |
| UNIPROTKB|G4MPS8 | 418 | MGG_09217 "Uncharacterized pro | 0.518 | 0.492 | 0.403 | 1.2e-40 | |
| CGD|CAL0000364 | 395 | orf19.592 [Candida albicans (t | 0.340 | 0.341 | 0.349 | 3.1e-33 |
| TAIR|locus:2045542 AT2G32170 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 874 (312.7 bits), Expect = 5.7e-123, Sum P(3) = 5.7e-123
Identities = 159/201 (79%), Positives = 174/201 (86%)
Query: 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 248
+PPACLVPGAGLGRLALEIS LGFISQGNEFSYYMMICSSFILN+T+ GEW IYPWIHS
Sbjct: 352 TPPACLVPGAGLGRLALEISCLGFISQGNEFSYYMMICSSFILNYTQVPGEWTIYPWIHS 411
Query: 249 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID 308
NCNSLSD+DQLRP++IPDIHPASAGITEGFSMCGGDFVEVY++ S G WDAVVTCFFID
Sbjct: 412 NCNSLSDNDQLRPIAIPDIHPASAGITEGFSMCGGDFVEVYNESSHAGMWDAVVTCFFID 471
Query: 309 TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGX 368
TAHN++EYI+ IS+ILKDGGVWINLGPLLYHFAD YG E+EMSIELSLEDVKRVA H+G
Sbjct: 472 TAHNVIEYIQTISKILKDGGVWINLGPLLYHFADTYGHENEMSIELSLEDVKRVASHFGF 531
Query: 369 XXXXXXXXXXXXXXNPRSMMQ 389
NPR+MMQ
Sbjct: 532 VIEKERTIETTYTTNPRAMMQ 552
|
|
| TAIR|locus:2045547 AT2G32160 "AT2G32160" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1069 (381.4 bits), Expect = 3.3e-115, Sum P(2) = 3.3e-115
Identities = 206/298 (69%), Positives = 234/298 (78%)
Query: 103 LENREE--TNQSCSND---FTDSNGNASSPACDWLDPSIQLNVPLADVDKVRCIIRNIVR 157
L+N E N++C D +G+ + DWLD S+Q +VPL DV+KVR +IRNIVR
Sbjct: 152 LKNAEIRLNNKTCEFDGGHLNHDHGSVPFSSHDWLDSSLQAHVPLVDVNKVRWVIRNIVR 211
Query: 158 DWAAEGKTERDQCYKPILEELDALFPNRSKESP-PACLVPGAGLGRLALEISHLGFISQG 216
DW AEG+ ERD+CYKPILEELD+LFP+R KES PACLVPGAGLGRLALEIS LGF SQG
Sbjct: 212 DWGAEGQRERDECYKPILEELDSLFPDRHKESTRPACLVPGAGLGRLALEISCLGFRSQG 271
Query: 217 NEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITE 276
NE SYYMM+CSSFILN+T+ GEW IYPWIH+NCNSLSD DQLRP+SIPDIHPASAG+TE
Sbjct: 272 NEVSYYMMLCSSFILNYTQLPGEWTIYPWIHTNCNSLSDDDQLRPISIPDIHPASAGVTE 331
Query: 277 GFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL 336
FSMC GDFVEV+++ SQ G WDAVVTCFFIDTAHNI+EYIE IS+ILKDGGV INLGPL
Sbjct: 332 SFSMCRGDFVEVFNESSQAGMWDAVVTCFFIDTAHNIIEYIETISKILKDGGVLINLGPL 391
Query: 337 LYHFADLYGQEDEMSIELSLEDVKRVALHYGXXXXXXXXXXXXXXXNPRSMMQVSFLP 394
LYHFAD G E+EMSIELSLEDVKRVA HYG NPRSMM+ + P
Sbjct: 392 LYHFADEQGLENEMSIELSLEDVKRVASHYGFEMEKEKTIETTYSTNPRSMMKNRYYP 449
|
|
| ZFIN|ZDB-GENE-050306-48 zgc:112985 "zgc:112985" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 654 (235.3 bits), Expect = 3.7e-64, P = 3.7e-64
Identities = 126/248 (50%), Positives = 164/248 (66%)
Query: 144 DVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFP-NRSKESPPACLVPGAGLGR 202
D+DK++ I+ VRDW+ GK ERD CYKPI++E+ LFP ++ S LVPGAGLGR
Sbjct: 117 DMDKLKSTIKQFVRDWSEAGKAERDSCYKPIIDEIQRLFPPDQCDVSQVRVLVPGAGLGR 176
Query: 203 LALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPV 262
LA EI+HLG+ QGNE+S++M+ S+F+LN + +YPWIH N+ + SDQ RPV
Sbjct: 177 LAWEIAHLGYSCQGNEWSFFMLFSSNFVLNRCDKENALTLYPWIHQFSNNKASSDQTRPV 236
Query: 263 SIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISR 322
S PD++P S FSM GDF EVY+DP WD V TCFFIDTAHN+++YIE I
Sbjct: 237 SFPDVNPQSLPEDSDFSMVAGDFQEVYNDPEM---WDCVATCFFIDTAHNVLDYIETIWN 293
Query: 323 ILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGXXXXXXXXXX-XXXX 381
ILK GGVW+NLGPLLYH+ ++ +E+SIELS ED+K VA+ YG
Sbjct: 294 ILKPGGVWLNLGPLLYHYENM---ANELSIELSYEDIKAVAMKYGFVLELERESVPSTYT 350
Query: 382 XNPRSMMQ 389
N RSM++
Sbjct: 351 ENDRSMLK 358
|
|
| MGI|MGI:1914633 2410127L17Rik "RIKEN cDNA 2410127L17 gene" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
Identities = 122/256 (47%), Positives = 162/256 (63%)
Query: 144 DVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPN-RSKESPPACLVPGAGLGR 202
D+DK++ ++ VRDW+ GK ERD CYKPI++E+ FP R S LVPGAGLGR
Sbjct: 145 DMDKLKSTLKQFVRDWSETGKAERDACYKPIIKEIIKNFPKERWDPSKVNILVPGAGLGR 204
Query: 203 LALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPV 262
LA E++ LG+ QGNE+S++M+ S+F+LN ++ +YPWIH N+ +DQ+RP+
Sbjct: 205 LAWEVAMLGYACQGNEWSFFMLFSSNFVLNRCSEINKYKLYPWIHQFSNNRRSADQIRPI 264
Query: 263 SIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISR 322
PD+ P S FSM GDF E+YS+ AWD + TCFFIDTAHN+++YI+ I R
Sbjct: 265 LFPDVDPHSLPPGSNFSMTAGDFQEIYSE---CNAWDCIATCFFIDTAHNVIDYIDTIWR 321
Query: 323 ILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGXXXXXXXXXXXXXXX 382
ILK GG+WINLGPLLYHF +L +E+SIELS ED+K V L YG
Sbjct: 322 ILKPGGIWINLGPLLYHFENL---ANELSIELSYEDIKNVVLQYGFQLEVEKESVLSTYT 378
Query: 383 -NPRSMMQVSFLPCTL 397
N SMM+ + C L
Sbjct: 379 VNDLSMMKY-YYECVL 393
|
|
| FB|FBgn0023522 CG11596 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
Identities = 106/256 (41%), Positives = 152/256 (59%)
Query: 139 NVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPA-CLVPG 197
NV D+D+ + ++ I RDW+ EG ER+Q YKPI++ + A F + E LVPG
Sbjct: 119 NVRHGDMDQAQSTLKLIARDWSTEGALEREQSYKPIIDSIVAYFKHSDFELKDIKILVPG 178
Query: 198 AGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSD 257
AGLGRL E++ LG+ +GNEFSY+M+I S+F+LN + ++ +YPW+H N+L D
Sbjct: 179 AGLGRLTYELACLGYSCEGNEFSYFMLIASNFVLNLCDNENKYVLYPWVHQYVNNLRRED 238
Query: 258 QLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYI 317
Q+ PV PD+ P F + GDF+EVY P+ A++ V TCFFID A+N++++I
Sbjct: 239 QVAPVRFPDVCPLKNPPKGHFEIAAGDFLEVYKTPN---AYNCVATCFFIDCANNVIDFI 295
Query: 318 EIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGXXXXXXXXXX 377
I +IL GG+W+NLGPLLYHF+D+ GQ SIE + ED+ + G
Sbjct: 296 RTIYKILVPGGIWVNLGPLLYHFSDVSGQN---SIEPAFEDLCIIMESVGFVIEKSRTGI 352
Query: 378 XXXXX-NPRSMMQVSF 392
NP SM Q +
Sbjct: 353 RTKYAQNPSSMKQSEY 368
|
|
| ASPGD|ASPL0000056516 AN0865 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 522 (188.8 bits), Expect = 3.6e-50, P = 3.6e-50
Identities = 105/209 (50%), Positives = 134/209 (64%)
Query: 143 ADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNR-SKESPPACLVPGAGLG 201
AD++K IR RDW+AEG+ ER+ CY P+L +LD FP++ +E LVPGAGLG
Sbjct: 126 ADINKAHSTIRQFYRDWSAEGQAEREACYIPVLRDLDLEFPDKLEREEFVKVLVPGAGLG 185
Query: 202 RLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRP 261
RL EI GF ++GNE SY+ ++ SS++LNHTE A +YP+ N LS QLR
Sbjct: 186 RLVFEICRAGFAAEGNEISYHQLLASSWVLNHTEGAQRHALYPFALHFSNILSREQQLRK 245
Query: 262 VSIPDIHPASA-------GITEG-FSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNI 313
V IPD+HPA+A G G SM DFV +YS PSQ A+DAV T FFIDTA N+
Sbjct: 246 VMIPDVHPATAMLEAQASGTPFGTMSMSAADFVVLYSSPSQTDAFDAVATVFFIDTAPNL 305
Query: 314 VEYIEIISRILKDGGVWINLGPLLYHFAD 342
+ YIE + LK G+WIN+GPLL+HF D
Sbjct: 306 IRYIEAVRNCLKSNGIWINVGPLLWHFED 334
|
|
| POMBASE|SPBC1778.07 SPBC1778.07 "methyltransferase N2227 family" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 493 (178.6 bits), Expect = 4.2e-47, P = 4.2e-47
Identities = 112/282 (39%), Positives = 159/282 (56%)
Query: 123 NASSPA-CDWLDPSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDAL 181
NA+ P C D + +V + + KV ++ I RDW+ E ER Y P +EEL++L
Sbjct: 78 NAAIPVFCSDFDQNELFHVNVDMMQKVSSTLKQIARDWSTECVEERRTTYAPFIEELNSL 137
Query: 182 FPNRSKE-SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEW 240
FP+ S + S LVPG+GLGRLA +I+ GF QGNEFSY+M++ S FILN + ++
Sbjct: 138 FPSDSIDRSKIRVLVPGSGLGRLAFDIAVEGFACQGNEFSYFMLLTSHFILNCVKQENQF 197
Query: 241 NIYPWIHSNCNSLSDSDQLRPVSIPDIHPAS-AGITEGFSMCGGDFVEVYSDPSQVGAWD 299
+YP+IHS N + DQ+R ++IPD P+ ++ FSM GDF+EVY ++
Sbjct: 198 LVYPYIHSFSNHVMRDDQVRSLNIPDAVPSQYLRNSQNFSMAAGDFLEVYGTEESRDSFQ 257
Query: 300 AVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMS-------I 352
V TCFFIDT NI++Y++ I L DGG WINLGPLLYHF + G + S +
Sbjct: 258 VVATCFFIDTTKNILDYLDTIKNCLVDGGYWINLGPLLYHF-ESEGTSNSNSDSQQQPFV 316
Query: 353 ELSLEDVKRVALHYGXXXXXXXXXXXXXXXNPRSMMQVSFLP 394
EL+LE + V G + RSM++ + P
Sbjct: 317 ELTLEQLFYVMDSMGFEVLKHNSVDTTYMGDKRSMLEWIYHP 358
|
|
| DICTYBASE|DDB_G0282239 DDB_G0282239 "N2227-like domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 488 (176.8 bits), Expect = 1.4e-46, P = 1.4e-46
Identities = 113/260 (43%), Positives = 162/260 (62%)
Query: 110 NQSCSNDFTDSNGNASSPACDWLDPSI--QLNVPLADVDKVRCIIRNIVRDWAAEGKTER 167
N+ C N F+ S+ N+++ +DP+ + + +D+++ IR +VR+W+ EGK ER
Sbjct: 171 NEHC-NIFSQSSDNSANSE-RIVDPTNLDHIKIDYFMMDQLKSTIRQLVREWSEEGKLER 228
Query: 168 DQCYKPILEELDALFPNR--SKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMI 225
DQ ++PI ++L ++ + + S PGAGLGRL LEI+ LGF SQG E+S+ M+I
Sbjct: 229 DQAFEPIKQQLLEIYGHIPFQERSKIRVYSPGAGLGRLCLEIASLGFSSQGIEYSFMMLI 288
Query: 226 CSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH-----PASAGITEGFSM 280
S+F+LN E E+ I+P+IH N L D DQLR V+IPD+ P + E FSM
Sbjct: 289 VSNFMLNKVEKINEFKIHPYIHQTVNVLRDIDQLRTVTIPDVLSSELLPKNNPALE-FSM 347
Query: 281 CGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHF 340
GDF + + S +D + TCFFIDTA NI+EY++ IS+ILK GG WIN GPLLYH
Sbjct: 348 SAGDFTKNIEENS----FDCICTCFFIDTAPNILEYVDCISKILKPGGTWINFGPLLYHH 403
Query: 341 ADLYGQEDEMSIELSLEDVK 360
A ++D SIELS E ++
Sbjct: 404 AK---KKD--SIELSYEQLR 418
|
|
| UNIPROTKB|G4MPS8 MGG_09217 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)] | Back alignment and assigned GO terms |
|---|
Score = 432 (157.1 bits), Expect = 1.2e-40, P = 1.2e-40
Identities = 92/228 (40%), Positives = 134/228 (58%)
Query: 144 DVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKE----SPPA------- 192
D+DK R +R RDW+AEG+ ER+ Y P+ + L + R +E SPP+
Sbjct: 113 DIDKARSTLRQFYRDWSAEGRPEREASYGPVKQYLQHMEQVRIQEWFGPSPPSPLPSLPP 172
Query: 193 --CLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250
LVPGAGLGRL ++ LG+ +GNE SY+ ++ SS++LN A + IYPW+ S
Sbjct: 173 LKVLVPGAGLGRLVFDLCDLGYEVEGNEISYHQLLASSYVLNRAPAARQHTIYPWVQSFS 232
Query: 251 NSLSDSDQLRPVSIPDIHPASAGITE-----GFSMCGGDFVEVYSDPSQVGAWDAVVTCF 305
N S ++Q R ++PD+HPA+ T SM DF+ +Y +Q +DAV + F
Sbjct: 233 NHASRANQFRSYAVPDVHPATQLATPTKAGGSMSMSAADFLCLYEQEAQRERFDAVASVF 292
Query: 306 FIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADL----YGQEDE 349
F+DTA N++ YIE I L+ GGV IN+GPLL+HF D +G++D+
Sbjct: 293 FLDTAPNLIRYIEAIRNCLRPGGVLINVGPLLWHFEDNAPGNHGRDDD 340
|
|
| CGD|CAL0000364 orf19.592 [Candida albicans (taxid:5476)] | Back alignment and assigned GO terms |
|---|
Score = 243 (90.6 bits), Expect = 3.1e-33, Sum P(2) = 3.1e-33
Identities = 51/146 (34%), Positives = 83/146 (56%)
Query: 155 IVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFIS 214
++R+W+ EG+ ERD + I+ EL+ L+P+ L PG GLGRL +E+ GF +
Sbjct: 107 LMREWSDEGQAERDVAFTRIISELEELYPDEPSRQSIRILNPGCGLGRLVMELVIRGFWT 166
Query: 215 QGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP----- 269
QGNE SY+M++ S+FILNH++ +I+P++ + + + Q R ++IPD+ P
Sbjct: 167 QGNEISYHMLLASNFILNHSQFPHSHSIFPFLSRSSHLVKRKYQTRGITIPDVAPFAVLS 226
Query: 270 ------ASAGITEGFSMCGGDFVEVY 289
S E S+ G F+E+Y
Sbjct: 227 ELKEKTPSIAYEELMSITAGSFLELY 252
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q5BJZ6 | CI041_RAT | No assigned EC number | 0.5039 | 0.6221 | 0.6175 | yes | no |
| Q80UY1 | CI041_MOUSE | No assigned EC number | 0.5039 | 0.6221 | 0.6175 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 397 | |||
| pfam07942 | 268 | pfam07942, N2227, N2227-like protein | 1e-139 |
| >gnl|CDD|219653 pfam07942, N2227, N2227-like protein | Back alignment and domain information |
|---|
Score = 397 bits (1023), Expect = e-139
Identities = 154/262 (58%), Positives = 190/262 (72%), Gaps = 8/262 (3%)
Query: 134 PSIQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKE-SPPA 192
P +NV D+ KVR +R IVRDW+AEG+ ERD YKPI+EEL+ LFP+RS + S
Sbjct: 1 PHEPVNVSRGDMSKVRSTLRQIVRDWSAEGQVERDPLYKPIIEELNRLFPSRSHDRSKIR 60
Query: 193 CLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252
LVPGAGLGRLA E++ LG+ QGNEFSY+M++CS+FILN+ + + IYP+IHS N
Sbjct: 61 ILVPGAGLGRLAYELATLGYQVQGNEFSYFMLLCSNFILNYCKEENQITIYPFIHSFSNQ 120
Query: 253 LSDSDQLRPVSIPDIHPAS-AGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH 311
L+ DQLRPV IPD+HP S G FSMC GDF+EVY + + ++D VVTCFFIDTAH
Sbjct: 121 LTRDDQLRPVQIPDVHPLSELGPRGNFSMCAGDFLEVYGEDA--NSYDVVVTCFFIDTAH 178
Query: 312 NIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFE 371
N++EYI+ I +ILK GG WINLGPLLYHF L DEMSIELSLED+KR+A GF+ E
Sbjct: 179 NVLEYIDTIEKILKPGGHWINLGPLLYHFEPL---PDEMSIELSLEDIKRLATKRGFKDE 235
Query: 372 KEKT-IETTYTTNPRSMMQVSF 392
KE+T I YTTN SMMQ +
Sbjct: 236 KEETGILNGYTTNYESMMQGYY 257
|
This family features sequences that are similar to a region of hypothetical yeast gene product N2227. This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions. Length = 268 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 397 | |||
| PF07942 | 270 | N2227: N2227-like protein; InterPro: IPR012901 Thi | 100.0 | |
| KOG2798 | 369 | consensus Putative trehalase [Carbohydrate transpo | 100.0 | |
| PRK11207 | 197 | tellurite resistance protein TehB; Provisional | 99.67 | |
| PF13489 | 161 | Methyltransf_23: Methyltransferase domain; PDB: 3J | 99.66 | |
| PRK11036 | 255 | putative S-adenosyl-L-methionine-dependent methylt | 99.65 | |
| TIGR00477 | 195 | tehB tellurite resistance protein TehB. Part of a | 99.64 | |
| PF05724 | 218 | TPMT: Thiopurine S-methyltransferase (TPMT); Inter | 99.64 | |
| TIGR03840 | 213 | TMPT_Se_Te thiopurine S-methyltransferase, Se/Te d | 99.63 | |
| PRK13256 | 226 | thiopurine S-methyltransferase; Reviewed | 99.63 | |
| COG2226 | 238 | UbiE Methylase involved in ubiquinone/menaquinone | 99.62 | |
| PLN02233 | 261 | ubiquinone biosynthesis methyltransferase | 99.62 | |
| PRK13255 | 218 | thiopurine S-methyltransferase; Reviewed | 99.62 | |
| PRK10258 | 251 | biotin biosynthesis protein BioC; Provisional | 99.6 | |
| PRK14103 | 255 | trans-aconitate 2-methyltransferase; Provisional | 99.6 | |
| PLN02396 | 322 | hexaprenyldihydroxybenzoate methyltransferase | 99.6 | |
| PF01209 | 233 | Ubie_methyltran: ubiE/COQ5 methyltransferase famil | 99.6 | |
| PF12847 | 112 | Methyltransf_18: Methyltransferase domain; PDB: 3G | 99.59 | |
| PLN02244 | 340 | tocopherol O-methyltransferase | 99.57 | |
| PRK01683 | 258 | trans-aconitate 2-methyltransferase; Provisional | 99.55 | |
| PF08241 | 95 | Methyltransf_11: Methyltransferase domain; InterPr | 99.55 | |
| TIGR02752 | 231 | MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me | 99.54 | |
| PRK15068 | 322 | tRNA mo(5)U34 methyltransferase; Provisional | 99.54 | |
| PRK12335 | 287 | tellurite resistance protein TehB; Provisional | 99.54 | |
| PF03848 | 192 | TehB: Tellurite resistance protein TehB; InterPro: | 99.52 | |
| TIGR00452 | 314 | methyltransferase, putative. Known examples to dat | 99.52 | |
| TIGR00740 | 239 | methyltransferase, putative. A simple BLAST search | 99.48 | |
| smart00828 | 224 | PKS_MT Methyltransferase in polyketide synthase (P | 99.48 | |
| PRK15451 | 247 | tRNA cmo(5)U34 methyltransferase; Provisional | 99.47 | |
| PLN02585 | 315 | magnesium protoporphyrin IX methyltransferase | 99.47 | |
| PTZ00098 | 263 | phosphoethanolamine N-methyltransferase; Provision | 99.47 | |
| TIGR02021 | 219 | BchM-ChlM magnesium protoporphyrin O-methyltransfe | 99.46 | |
| PF02353 | 273 | CMAS: Mycolic acid cyclopropane synthetase; InterP | 99.44 | |
| PF13847 | 152 | Methyltransf_31: Methyltransferase domain; PDB: 3T | 99.43 | |
| PLN02490 | 340 | MPBQ/MSBQ methyltransferase | 99.42 | |
| PRK00216 | 239 | ubiE ubiquinone/menaquinone biosynthesis methyltra | 99.41 | |
| PRK05785 | 226 | hypothetical protein; Provisional | 99.39 | |
| TIGR03438 | 301 | probable methyltransferase. This model represents | 99.39 | |
| COG2227 | 243 | UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4- | 99.38 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.37 | |
| PRK11873 | 272 | arsM arsenite S-adenosylmethyltransferase; Reviewe | 99.37 | |
| TIGR01983 | 224 | UbiG ubiquinone biosynthesis O-methyltransferase. | 99.35 | |
| PRK07580 | 230 | Mg-protoporphyrin IX methyl transferase; Validated | 99.34 | |
| TIGR02072 | 240 | BioC biotin biosynthesis protein BioC. This enzyme | 99.34 | |
| PRK05134 | 233 | bifunctional 3-demethylubiquinone-9 3-methyltransf | 99.33 | |
| TIGR00537 | 179 | hemK_rel_arch HemK-related putative methylase. The | 99.33 | |
| PRK11705 | 383 | cyclopropane fatty acyl phospholipid synthase; Pro | 99.33 | |
| PRK11088 | 272 | rrmA 23S rRNA methyltransferase A; Provisional | 99.31 | |
| PF08242 | 99 | Methyltransf_12: Methyltransferase domain; InterPr | 99.3 | |
| TIGR00138 | 181 | gidB 16S rRNA methyltransferase GidB. GidB (glucos | 99.29 | |
| PRK08317 | 241 | hypothetical protein; Provisional | 99.29 | |
| COG2230 | 283 | Cfa Cyclopropane fatty acid synthase and related m | 99.28 | |
| PRK00517 | 250 | prmA ribosomal protein L11 methyltransferase; Revi | 99.28 | |
| KOG1270 | 282 | consensus Methyltransferases [Coenzyme transport a | 99.28 | |
| TIGR00406 | 288 | prmA ribosomal protein L11 methyltransferase. Ribo | 99.28 | |
| PRK06202 | 232 | hypothetical protein; Provisional | 99.28 | |
| PRK14968 | 188 | putative methyltransferase; Provisional | 99.26 | |
| TIGR02081 | 194 | metW methionine biosynthesis protein MetW. This pr | 99.26 | |
| TIGR01934 | 223 | MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis | 99.26 | |
| PF13649 | 101 | Methyltransf_25: Methyltransferase domain; PDB: 3B | 99.25 | |
| PLN02336 | 475 | phosphoethanolamine N-methyltransferase | 99.24 | |
| PRK14967 | 223 | putative methyltransferase; Provisional | 99.23 | |
| PRK00107 | 187 | gidB 16S rRNA methyltransferase GidB; Reviewed | 99.23 | |
| KOG1271 | 227 | consensus Methyltransferases [General function pre | 99.23 | |
| TIGR02469 | 124 | CbiT precorrin-6Y C5,15-methyltransferase (decarbo | 99.21 | |
| KOG1540 | 296 | consensus Ubiquinone biosynthesis methyltransferas | 99.2 | |
| PF13659 | 117 | Methyltransf_26: Methyltransferase domain; PDB: 3G | 99.19 | |
| PRK08287 | 187 | cobalt-precorrin-6Y C(15)-methyltransferase; Valid | 99.17 | |
| TIGR03534 | 251 | RF_mod_PrmC protein-(glutamine-N5) methyltransfera | 99.17 | |
| PRK00121 | 202 | trmB tRNA (guanine-N(7)-)-methyltransferase; Revie | 99.16 | |
| TIGR01177 | 329 | conserved hypothetical protein TIGR01177. This fam | 99.15 | |
| PHA03411 | 279 | putative methyltransferase; Provisional | 99.14 | |
| PRK04266 | 226 | fibrillarin; Provisional | 99.1 | |
| PF08003 | 315 | Methyltransf_9: Protein of unknown function (DUF16 | 99.09 | |
| PRK00377 | 198 | cbiT cobalt-precorrin-6Y C(15)-methyltransferase; | 99.09 | |
| smart00138 | 264 | MeTrc Methyltransferase, chemotaxis proteins. Meth | 99.08 | |
| TIGR02716 | 306 | C20_methyl_CrtF C-20 methyltransferase BchU. Membe | 99.07 | |
| TIGR03587 | 204 | Pse_Me-ase pseudaminic acid biosynthesis-associate | 99.07 | |
| PF05401 | 201 | NodS: Nodulation protein S (NodS); InterPro: IPR00 | 99.06 | |
| PTZ00146 | 293 | fibrillarin; Provisional | 99.06 | |
| TIGR03533 | 284 | L3_gln_methyl protein-(glutamine-N5) methyltransfe | 99.01 | |
| PRK09328 | 275 | N5-glutamine S-adenosyl-L-methionine-dependent met | 99.01 | |
| TIGR00080 | 215 | pimt protein-L-isoaspartate(D-aspartate) O-methylt | 99.0 | |
| PRK13944 | 205 | protein-L-isoaspartate O-methyltransferase; Provis | 99.0 | |
| PRK06922 | 677 | hypothetical protein; Provisional | 98.99 | |
| PF05175 | 170 | MTS: Methyltransferase small domain; InterPro: IPR | 98.99 | |
| COG4123 | 248 | Predicted O-methyltransferase [General function pr | 98.99 | |
| TIGR00091 | 194 | tRNA (guanine-N(7)-)-methyltransferase. In E. coli | 98.98 | |
| cd02440 | 107 | AdoMet_MTases S-adenosylmethionine-dependent methy | 98.96 | |
| PRK07402 | 196 | precorrin-6B methylase; Provisional | 98.96 | |
| TIGR03704 | 251 | PrmC_rel_meth putative protein-(glutamine-N5) meth | 98.95 | |
| PRK15001 | 378 | SAM-dependent 23S ribosomal RNA mG1835 methyltrans | 98.94 | |
| PRK13942 | 212 | protein-L-isoaspartate O-methyltransferase; Provis | 98.94 | |
| PRK14966 | 423 | unknown domain/N5-glutamine S-adenosyl-L-methionin | 98.92 | |
| PRK09489 | 342 | rsmC 16S ribosomal RNA m2G1207 methyltransferase; | 98.92 | |
| PRK00312 | 212 | pcm protein-L-isoaspartate O-methyltransferase; Re | 98.91 | |
| PRK11805 | 307 | N5-glutamine S-adenosyl-L-methionine-dependent met | 98.9 | |
| PHA03412 | 241 | putative methyltransferase; Provisional | 98.9 | |
| PF06325 | 295 | PrmA: Ribosomal protein L11 methyltransferase (Prm | 98.9 | |
| PF07021 | 193 | MetW: Methionine biosynthesis protein MetW; InterP | 98.88 | |
| COG2264 | 300 | PrmA Ribosomal protein L11 methylase [Translation, | 98.88 | |
| PF06080 | 204 | DUF938: Protein of unknown function (DUF938); Inte | 98.85 | |
| PRK11188 | 209 | rrmJ 23S rRNA methyltransferase J; Provisional | 98.84 | |
| TIGR00536 | 284 | hemK_fam HemK family putative methylases. The gene | 98.81 | |
| KOG2361 | 264 | consensus Predicted methyltransferase [General fun | 98.81 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 98.79 | |
| COG4106 | 257 | Tam Trans-aconitate methyltransferase [General fun | 98.78 | |
| TIGR00438 | 188 | rrmJ cell division protein FtsJ. | 98.76 | |
| PRK00811 | 283 | spermidine synthase; Provisional | 98.75 | |
| KOG4300 | 252 | consensus Predicted methyltransferase [General fun | 98.75 | |
| PLN02232 | 160 | ubiquinone biosynthesis methyltransferase | 98.74 | |
| PRK14121 | 390 | tRNA (guanine-N(7)-)-methyltransferase; Provisiona | 98.73 | |
| PF05148 | 219 | Methyltransf_8: Hypothetical methyltransferase; In | 98.73 | |
| KOG2940 | 325 | consensus Predicted methyltransferase [General fun | 98.69 | |
| smart00650 | 169 | rADc Ribosomal RNA adenine dimethylases. | 98.68 | |
| PRK03612 | 521 | spermidine synthase; Provisional | 98.66 | |
| TIGR00417 | 270 | speE spermidine synthase. the SpeE subunit of sper | 98.66 | |
| PRK01581 | 374 | speE spermidine synthase; Validated | 98.66 | |
| KOG1541 | 270 | consensus Predicted protein carboxyl methylase [Ge | 98.65 | |
| PRK04457 | 262 | spermidine synthase; Provisional | 98.64 | |
| PLN03075 | 296 | nicotianamine synthase; Provisional | 98.63 | |
| PLN02781 | 234 | Probable caffeoyl-CoA O-methyltransferase | 98.62 | |
| PRK15128 | 396 | 23S rRNA m(5)C1962 methyltransferase; Provisional | 98.62 | |
| PRK13943 | 322 | protein-L-isoaspartate O-methyltransferase; Provis | 98.61 | |
| COG4976 | 287 | Predicted methyltransferase (contains TPR repeat) | 98.58 | |
| PF05891 | 218 | Methyltransf_PK: AdoMet dependent proline di-methy | 98.55 | |
| PF05219 | 265 | DREV: DREV methyltransferase; InterPro: IPR007884 | 98.51 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 98.51 | |
| PRK10901 | 427 | 16S rRNA methyltransferase B; Provisional | 98.49 | |
| PLN02672 | 1082 | methionine S-methyltransferase | 98.45 | |
| PRK14904 | 445 | 16S rRNA methyltransferase B; Provisional | 98.43 | |
| PLN02366 | 308 | spermidine synthase | 98.43 | |
| PF05185 | 448 | PRMT5: PRMT5 arginine-N-methyltransferase; InterPr | 98.41 | |
| COG2890 | 280 | HemK Methylase of polypeptide chain release factor | 98.4 | |
| PRK04148 | 134 | hypothetical protein; Provisional | 98.4 | |
| COG2521 | 287 | Predicted archaeal methyltransferase [General func | 98.4 | |
| PRK13168 | 443 | rumA 23S rRNA m(5)U1939 methyltransferase; Reviewe | 98.39 | |
| COG2242 | 187 | CobL Precorrin-6B methylase 2 [Coenzyme metabolism | 98.37 | |
| PF01596 | 205 | Methyltransf_3: O-methyltransferase; InterPro: IPR | 98.37 | |
| KOG3045 | 325 | consensus Predicted RNA methylase involved in rRNA | 98.36 | |
| PF01135 | 209 | PCMT: Protein-L-isoaspartate(D-aspartate) O-methyl | 98.36 | |
| PLN02476 | 278 | O-methyltransferase | 98.33 | |
| COG2263 | 198 | Predicted RNA methylase [Translation, ribosomal st | 98.33 | |
| PRK14903 | 431 | 16S rRNA methyltransferase B; Provisional | 98.32 | |
| PRK14902 | 444 | 16S rRNA methyltransferase B; Provisional | 98.3 | |
| PF01234 | 256 | NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: I | 98.3 | |
| KOG3010 | 261 | consensus Methyltransferase [General function pred | 98.29 | |
| PRK03522 | 315 | rumB 23S rRNA methyluridine methyltransferase; Rev | 98.28 | |
| KOG2899 | 288 | consensus Predicted methyltransferase [General fun | 98.28 | |
| PRK10909 | 199 | rsmD 16S rRNA m(2)G966-methyltransferase; Provisio | 98.26 | |
| PRK14896 | 258 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.25 | |
| TIGR00446 | 264 | nop2p NOL1/NOP2/sun family putative RNA methylase. | 98.23 | |
| PF03291 | 331 | Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 | 98.21 | |
| PF01739 | 196 | CheR: CheR methyltransferase, SAM binding domain; | 98.2 | |
| PRK00274 | 272 | ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 | 98.2 | |
| KOG1975 | 389 | consensus mRNA cap methyltransferase [RNA processi | 98.2 | |
| COG2519 | 256 | GCD14 tRNA(1-methyladenosine) methyltransferase an | 98.18 | |
| COG2813 | 300 | RsmC 16S RNA G1207 methylase RsmC [Translation, ri | 98.18 | |
| TIGR00479 | 431 | rumA 23S rRNA (uracil-5-)-methyltransferase RumA. | 98.16 | |
| PLN02589 | 247 | caffeoyl-CoA O-methyltransferase | 98.15 | |
| PTZ00338 | 294 | dimethyladenosine transferase-like protein; Provis | 98.13 | |
| PRK14901 | 434 | 16S rRNA methyltransferase B; Provisional | 98.11 | |
| TIGR00095 | 189 | RNA methyltransferase, RsmD family. This model rep | 98.1 | |
| PRK10611 | 287 | chemotaxis methyltransferase CheR; Provisional | 98.09 | |
| PF03141 | 506 | Methyltransf_29: Putative S-adenosyl-L-methionine- | 98.07 | |
| COG1041 | 347 | Predicted DNA modification methylase [DNA replicat | 98.06 | |
| TIGR02085 | 374 | meth_trns_rumB 23S rRNA (uracil-5-)-methyltransfer | 98.06 | |
| PF11968 | 219 | DUF3321: Putative methyltransferase (DUF3321); Int | 98.06 | |
| TIGR00563 | 426 | rsmB ribosomal RNA small subunit methyltransferase | 98.06 | |
| PF12147 | 311 | Methyltransf_20: Putative methyltransferase; Inter | 98.0 | |
| TIGR00478 | 228 | tly hemolysin TlyA family protein. Hemolysins are | 98.0 | |
| PF02390 | 195 | Methyltransf_4: Putative methyltransferase ; Inter | 97.99 | |
| PF01170 | 179 | UPF0020: Putative RNA methylase family UPF0020; In | 97.95 | |
| PF08704 | 247 | GCD14: tRNA methyltransferase complex GCD14 subuni | 97.93 | |
| PF01564 | 246 | Spermine_synth: Spermine/spermidine synthase; Inte | 97.91 | |
| COG0500 | 257 | SmtA SAM-dependent methyltransferases [Secondary m | 97.89 | |
| COG2518 | 209 | Pcm Protein-L-isoaspartate carboxylmethyltransfera | 97.88 | |
| COG4122 | 219 | Predicted O-methyltransferase [General function pr | 97.88 | |
| PLN02823 | 336 | spermine synthase | 97.87 | |
| TIGR00755 | 253 | ksgA dimethyladenosine transferase. Alternate name | 97.85 | |
| PF00891 | 241 | Methyltransf_2: O-methyltransferase; InterPro: IPR | 97.84 | |
| KOG1499 | 346 | consensus Protein arginine N-methyltransferase PRM | 97.79 | |
| COG0421 | 282 | SpeE Spermidine synthase [Amino acid transport and | 97.78 | |
| PRK00536 | 262 | speE spermidine synthase; Provisional | 97.77 | |
| TIGR03439 | 319 | methyl_EasF probable methyltransferase domain, Eas | 97.77 | |
| PF02384 | 311 | N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 T | 97.76 | |
| PRK11727 | 321 | 23S rRNA mA1618 methyltransferase; Provisional | 97.67 | |
| COG1352 | 268 | CheR Methylase of chemotaxis methyl-accepting prot | 97.64 | |
| PRK11783 | 702 | rlmL 23S rRNA m(2)G2445 methyltransferase; Provisi | 97.61 | |
| KOG1661 | 237 | consensus Protein-L-isoaspartate(D-aspartate) O-me | 97.53 | |
| TIGR02987 | 524 | met_A_Alw26 type II restriction m6 adenine DNA met | 97.52 | |
| COG3963 | 194 | Phospholipid N-methyltransferase [Lipid metabolism | 97.47 | |
| PRK00050 | 296 | 16S rRNA m(4)C1402 methyltranserfase; Provisional | 97.43 | |
| COG0030 | 259 | KsgA Dimethyladenosine transferase (rRNA methylati | 97.41 | |
| KOG1269 | 364 | consensus SAM-dependent methyltransferases [Lipid | 97.41 | |
| COG0220 | 227 | Predicted S-adenosylmethionine-dependent methyltra | 97.37 | |
| PF02475 | 200 | Met_10: Met-10+ like-protein; InterPro: IPR003402 | 97.31 | |
| PF08123 | 205 | DOT1: Histone methylation protein DOT1 ; InterPro: | 97.29 | |
| PRK04338 | 382 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 97.29 | |
| PF10294 | 173 | Methyltransf_16: Putative methyltransferase; Inter | 97.28 | |
| PF01728 | 181 | FtsJ: FtsJ-like methyltransferase; InterPro: IPR00 | 97.24 | |
| KOG3178 | 342 | consensus Hydroxyindole-O-methyltransferase and re | 97.14 | |
| KOG2352 | 482 | consensus Predicted spermine/spermidine synthase [ | 97.14 | |
| PF09243 | 274 | Rsm22: Mitochondrial small ribosomal subunit Rsm22 | 97.04 | |
| PF09445 | 163 | Methyltransf_15: RNA cap guanine-N2 methyltransfer | 97.0 | |
| PF03602 | 183 | Cons_hypoth95: Conserved hypothetical protein 95; | 97.0 | |
| KOG1500 | 517 | consensus Protein arginine N-methyltransferase CAR | 96.96 | |
| PRK01544 | 506 | bifunctional N5-glutamine S-adenosyl-L-methionine- | 96.94 | |
| COG1092 | 393 | Predicted SAM-dependent methyltransferases [Genera | 96.87 | |
| TIGR00308 | 374 | TRM1 tRNA(guanine-26,N2-N2) methyltransferase. Thi | 96.8 | |
| KOG0820 | 315 | consensus Ribosomal RNA adenine dimethylase [RNA p | 96.71 | |
| PF10672 | 286 | Methyltrans_SAM: S-adenosylmethionine-dependent me | 96.67 | |
| PRK11760 | 357 | putative 23S rRNA C2498 ribose 2'-O-ribose methylt | 96.63 | |
| COG1064 | 339 | AdhP Zn-dependent alcohol dehydrogenases [General | 96.51 | |
| TIGR02143 | 353 | trmA_only tRNA (uracil-5-)-methyltransferase. This | 96.49 | |
| PF13679 | 141 | Methyltransf_32: Methyltransferase domain | 96.39 | |
| PRK11933 | 470 | yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; | 96.37 | |
| COG2265 | 432 | TrmA SAM-dependent methyltransferases related to t | 96.34 | |
| PRK05031 | 362 | tRNA (uracil-5-)-methyltransferase; Validated | 96.31 | |
| PRK10742 | 250 | putative methyltransferase; Provisional | 96.25 | |
| KOG3420 | 185 | consensus Predicted RNA methylase [Translation, ri | 96.12 | |
| COG2520 | 341 | Predicted methyltransferase [General function pred | 96.1 | |
| KOG1663 | 237 | consensus O-methyltransferase [Secondary metabolit | 96.0 | |
| KOG2904 | 328 | consensus Predicted methyltransferase [General fun | 95.89 | |
| KOG3987 | 288 | consensus Uncharacterized conserved protein DREV/C | 95.84 | |
| PF01269 | 229 | Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibr | 95.65 | |
| PF03059 | 276 | NAS: Nicotianamine synthase protein; InterPro: IPR | 95.64 | |
| PF04445 | 234 | SAM_MT: Putative SAM-dependent methyltransferase; | 95.63 | |
| PF00398 | 262 | RrnaAD: Ribosomal RNA adenine dimethylase; InterPr | 95.55 | |
| COG4076 | 252 | Predicted RNA methylase [General function predicti | 95.38 | |
| COG0742 | 187 | N6-adenine-specific methylase [DNA replication, re | 95.29 | |
| KOG3191 | 209 | consensus Predicted N6-DNA-methyltransferase [Tran | 95.07 | |
| PF07757 | 112 | AdoMet_MTase: Predicted AdoMet-dependent methyltra | 95.06 | |
| PF02527 | 184 | GidB: rRNA small subunit methyltransferase G; Inte | 95.06 | |
| PF05958 | 352 | tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferas | 94.71 | |
| PF04816 | 205 | DUF633: Family of unknown function (DUF633) ; Inte | 94.57 | |
| PF06859 | 110 | Bin3: Bicoid-interacting protein 3 (Bin3); InterPr | 94.22 | |
| COG0293 | 205 | FtsJ 23S rRNA methylase [Translation, ribosomal st | 94.18 | |
| COG0116 | 381 | Predicted N6-adenine-specific DNA methylase [DNA r | 94.11 | |
| KOG2730 | 263 | consensus Methylase [General function prediction o | 94.02 | |
| PRK13699 | 227 | putative methylase; Provisional | 93.97 | |
| COG0357 | 215 | GidB Predicted S-adenosylmethionine-dependent meth | 93.92 | |
| TIGR01444 | 143 | fkbM_fam methyltransferase, FkbM family. Members o | 93.84 | |
| PRK09424 | 509 | pntA NAD(P) transhydrogenase subunit alpha; Provis | 93.76 | |
| KOG0822 | 649 | consensus Protein kinase inhibitor [Cell cycle con | 93.69 | |
| COG1189 | 245 | Predicted rRNA methylase [Translation, ribosomal s | 93.61 | |
| COG0144 | 355 | Sun tRNA and rRNA cytosine-C5-methylases [Translat | 93.42 | |
| KOG2915 | 314 | consensus tRNA(1-methyladenosine) methyltransferas | 93.29 | |
| COG4262 | 508 | Predicted spermidine synthase with an N-terminal m | 93.08 | |
| cd08283 | 386 | FDH_like_1 Glutathione-dependent formaldehyde dehy | 93.02 | |
| cd08254 | 338 | hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo | 92.99 | |
| PRK09880 | 343 | L-idonate 5-dehydrogenase; Provisional | 92.83 | |
| cd08232 | 339 | idonate-5-DH L-idonate 5-dehydrogenase. L-idonate | 92.58 | |
| PF13578 | 106 | Methyltransf_24: Methyltransferase domain; PDB: 3S | 92.55 | |
| cd00401 | 413 | AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado | 92.4 | |
| cd00315 | 275 | Cyt_C5_DNA_methylase Cytosine-C5 specific DNA meth | 92.06 | |
| PRK01747 | 662 | mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltrans | 91.54 | |
| COG4798 | 238 | Predicted methyltransferase [General function pred | 91.52 | |
| PF05430 | 124 | Methyltransf_30: S-adenosyl-L-methionine-dependent | 91.49 | |
| TIGR00006 | 305 | S-adenosyl-methyltransferase MraW. Genetics paper | 91.25 | |
| cd05188 | 271 | MDR Medium chain reductase/dehydrogenase (MDR)/zin | 91.13 | |
| KOG4058 | 199 | consensus Uncharacterized conserved protein [Funct | 90.77 | |
| KOG1709 | 271 | consensus Guanidinoacetate methyltransferase and r | 90.58 | |
| KOG2671 | 421 | consensus Putative RNA methylase [Replication, rec | 90.44 | |
| TIGR02822 | 329 | adh_fam_2 zinc-binding alcohol dehydrogenase famil | 89.77 | |
| PRK07417 | 279 | arogenate dehydrogenase; Reviewed | 89.58 | |
| TIGR00518 | 370 | alaDH alanine dehydrogenase. The family of known L | 89.41 | |
| PF00145 | 335 | DNA_methylase: C-5 cytosine-specific DNA methylase | 88.82 | |
| PLN03154 | 348 | putative allyl alcohol dehydrogenase; Provisional | 88.82 | |
| KOG1331 | 293 | consensus Predicted methyltransferase [General fun | 88.77 | |
| cd08230 | 355 | glucose_DH Glucose dehydrogenase. Glucose dehydrog | 88.76 | |
| PF01555 | 231 | N6_N4_Mtase: DNA methylase; InterPro: IPR002941 Th | 88.72 | |
| TIGR03451 | 358 | mycoS_dep_FDH mycothiol-dependent formaldehyde deh | 88.6 | |
| cd08285 | 351 | NADP_ADH NADP(H)-dependent alcohol dehydrogenases. | 88.35 | |
| cd05278 | 347 | FDH_like Formaldehyde dehydrogenases. Formaldehyde | 88.2 | |
| cd08261 | 337 | Zn_ADH7 Alcohol dehydrogenases of the MDR family. | 87.74 | |
| cd08237 | 341 | ribitol-5-phosphate_DH ribitol-5-phosphate dehydro | 87.63 | |
| cd08245 | 330 | CAD Cinnamyl alcohol dehydrogenases (CAD) and rela | 87.53 | |
| KOG3201 | 201 | consensus Uncharacterized conserved protein [Funct | 87.47 | |
| cd08294 | 329 | leukotriene_B4_DH_like 13-PGR is a bifunctional en | 87.36 | |
| PF02826 | 178 | 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy | 87.32 | |
| cd08295 | 338 | double_bond_reductase_like Arabidopsis alkenal dou | 87.28 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 86.85 | |
| PLN02494 | 477 | adenosylhomocysteinase | 86.65 | |
| COG0604 | 326 | Qor NADPH:quinone reductase and related Zn-depende | 86.48 | |
| TIGR00936 | 406 | ahcY adenosylhomocysteinase. This enzyme hydrolyze | 85.93 | |
| cd08293 | 345 | PTGR2 Prostaglandin reductase. Prostaglandins and | 85.88 | |
| cd08286 | 345 | FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik | 85.71 | |
| PTZ00357 | 1072 | methyltransferase; Provisional | 85.57 | |
| COG0270 | 328 | Dcm Site-specific DNA methylase [DNA replication, | 85.57 | |
| PRK12480 | 330 | D-lactate dehydrogenase; Provisional | 85.53 | |
| PF00107 | 130 | ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: | 85.53 | |
| PTZ00075 | 476 | Adenosylhomocysteinase; Provisional | 85.49 | |
| cd08255 | 277 | 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_ | 85.41 | |
| PF07091 | 251 | FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: | 85.38 | |
| TIGR01202 | 308 | bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl | 85.29 | |
| PF03446 | 163 | NAD_binding_2: NAD binding domain of 6-phosphogluc | 85.29 | |
| cd08234 | 334 | threonine_DH_like L-threonine dehydrogenase. L-thr | 84.87 | |
| COG5459 | 484 | Predicted rRNA methylase [Translation, ribosomal s | 84.41 | |
| PRK11559 | 296 | garR tartronate semialdehyde reductase; Provisiona | 84.36 | |
| TIGR02825 | 325 | B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15 | 84.03 | |
| cd08281 | 371 | liver_ADH_like1 Zinc-dependent alcohol dehydrogena | 83.54 | |
| COG1889 | 231 | NOP1 Fibrillarin-like rRNA methylase [Translation, | 83.43 | |
| TIGR00872 | 298 | gnd_rel 6-phosphogluconate dehydrogenase (decarbox | 82.96 | |
| TIGR00692 | 340 | tdh L-threonine 3-dehydrogenase. E. coli His-90 mo | 82.74 | |
| KOG1562 | 337 | consensus Spermidine synthase [Amino acid transpor | 82.73 | |
| cd08236 | 343 | sugar_DH NAD(P)-dependent sugar dehydrogenases. Th | 82.71 | |
| TIGR00561 | 511 | pntA NAD(P) transhydrogenase, alpha subunit. In so | 82.39 | |
| PRK05476 | 425 | S-adenosyl-L-homocysteine hydrolase; Provisional | 82.17 | |
| PRK13699 | 227 | putative methylase; Provisional | 82.15 | |
| PRK11064 | 415 | wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Pro | 82.04 | |
| KOG1501 | 636 | consensus Arginine N-methyltransferase [General fu | 82.02 | |
| PF01861 | 243 | DUF43: Protein of unknown function DUF43; InterPro | 81.98 | |
| cd05285 | 343 | sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a | 81.96 | |
| KOG2872 | 359 | consensus Uroporphyrinogen decarboxylase [Coenzyme | 81.89 | |
| TIGR03366 | 280 | HpnZ_proposed putative phosphonate catabolism asso | 81.38 | |
| PRK11524 | 284 | putative methyltransferase; Provisional | 80.87 | |
| cd08239 | 339 | THR_DH_like L-threonine dehydrogenase (TDH)-like. | 80.42 | |
| cd08233 | 351 | butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog | 80.35 | |
| KOG2187 | 534 | consensus tRNA uracil-5-methyltransferase and rela | 80.31 |
| >PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-82 Score=610.58 Aligned_cols=254 Identities=54% Similarity=0.969 Sum_probs=237.7
Q ss_pred CchhhHHHHHHHHHHhcccccChhHHhhchHHHHHHHHhhCCC-CCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCC
Q 015966 142 LADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPN-RSKESPPACLVPGAGLGRLALEISHLGFISQGNEFS 220 (397)
Q Consensus 142 ~~d~dkv~stL~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~-~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S 220 (397)
..|++||+++|+|++||||+||+.||+++|+||++.|++++|. ...+.+.+|||||||+||||+|||++||.|+|||+|
T Consensus 8 ~~d~~kV~s~L~q~~RDWS~eg~~ER~~~~~~I~~~L~~~~p~~~~~~~~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S 87 (270)
T PF07942_consen 8 PSDMDKVRSTLKQFVRDWSSEGEEERDPCYSPILDELESLFPPAGSDRSKIRVLVPGSGLGRLAWEIAKLGYAVQGNEFS 87 (270)
T ss_pred hhhHHHHHHHHHHHHhhCchhhHHHHHHHHHHHHHHHHHhhcccccCCCccEEEEcCCCcchHHHHHhhccceEEEEEch
Confidence 4999999999999999999999999999999999999999984 334578999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCC-CCCCCcceeEecccccccCCCCCCCCcc
Q 015966 221 YYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPAS-AGITEGFSMCGGDFVEVYSDPSQVGAWD 299 (397)
Q Consensus 221 ~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~-~~~~~~ls~~~GDF~ely~~~~~~~~fD 299 (397)
++||++++||||++.+.++++||||+|++||+.++++|+|+++|||+.|.. ...+.+|+|++|||+++|..+...++||
T Consensus 88 ~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d 167 (270)
T PF07942_consen 88 YFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDPSSELPSPSNLSMCAGDFLEVYGPDENKGSFD 167 (270)
T ss_pred HHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCcccccCCCCceeEecCccEEecCCcccCCccc
Confidence 999999999999999999999999999999999999999999999999976 4556789999999999998654568999
Q ss_pred EEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe-ecCC
Q 015966 300 AVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK-TIET 378 (397)
Q Consensus 300 ~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~-~i~~ 378 (397)
+||||||||||+||++||++|+++|||||+|||+|||+|||++. +.+++.++|||+|||+++++++||++++++ .+.+
T Consensus 168 ~VvT~FFIDTA~Ni~~Yi~tI~~lLkpgG~WIN~GPLlyh~~~~-~~~~~~sveLs~eEi~~l~~~~GF~~~~~~~~i~~ 246 (270)
T PF07942_consen 168 VVVTCFFIDTAENIIEYIETIEHLLKPGGYWINFGPLLYHFEPM-SIPNEMSVELSLEEIKELIEKLGFEIEKEESSILS 246 (270)
T ss_pred EEEEEEEeechHHHHHHHHHHHHHhccCCEEEecCCccccCCCC-CCCCCcccCCCHHHHHHHHHHCCCEEEEEEEeeec
Confidence 99999999999999999999999999999999999999999974 234456899999999999999999999987 4999
Q ss_pred CCCCCccccccccccccc
Q 015966 379 TYTTNPRSMMQVSFLPCT 396 (397)
Q Consensus 379 ~Y~~d~~sm~~~~Y~c~~ 396 (397)
+|++|++||+|+.|+|.|
T Consensus 247 ~Y~~d~~Sm~q~~Y~~~~ 264 (270)
T PF07942_consen 247 GYTTDPESMMQTYYGCVF 264 (270)
T ss_pred CCCCCHHHHhhCccccEE
Confidence 999999999999999987
|
This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions []. |
| >KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-81 Score=609.32 Aligned_cols=288 Identities=56% Similarity=0.931 Sum_probs=266.1
Q ss_pred ccccchhHhhhhccccccccCCCCCCCCCCCCCc-ccCCCCCchhhHHHHHHHHHHhcccccChhHHhhchHHHHHHHHh
Q 015966 102 KLENREETNQSCSNDFTDSNGNASSPACDWLDPS-IQLNVPLADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDA 180 (397)
Q Consensus 102 ~~~~n~~~~~~~~~~~~~~~g~~~~~~~~w~~~~-~~~~~~~~d~dkv~stL~q~~RDWS~eG~~ER~~~y~pIl~~L~~ 180 (397)
.|+-|..+...++... +..-.+|...+ ...++.+.+|.||+|+|+|++||||+||+.||+++|+||+++|..
T Consensus 68 ~I~~N~~v~r~Ia~~~-------~~~f~ed~~~~~~~~~~n~~~m~kv~s~l~~i~RdwssE~~~ERd~~ykpii~~l~~ 140 (369)
T KOG2798|consen 68 CIEENSRVIRAIAEEC-------PFEFTEDHDQKGELAQVNPDFMSKVSSTLKQICRDWSSEGQRERDQLYKPIIEELNS 140 (369)
T ss_pred HHHhhhHHHHHHHhhC-------ccccchhhhcccceecCCHHHHHHHHHHHHHHHHHhhhccchhhhhhhhhHHHHHHh
Confidence 3778888888877722 23444577766 778888999999999999999999999999999999999999999
Q ss_pred hCCCCC-CCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCc
Q 015966 181 LFPNRS-KESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQL 259 (397)
Q Consensus 181 ~~p~~~-~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~ql 259 (397)
+||... .+.+.+|||||||+||||++||..||.+|||||||+||++|.||||.++.+++++||||||++||+++++|||
T Consensus 141 lfp~~~~~r~ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQl 220 (369)
T KOG2798|consen 141 LFPSRGKERTKIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQL 220 (369)
T ss_pred hCCCccccccCceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeecccccccccccc
Confidence 999643 4578999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCC-CCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcc
Q 015966 260 RPVSIPDIHPA-SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLY 338 (397)
Q Consensus 260 r~v~iPDv~p~-~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlY 338 (397)
|+++|||+.|. ..+....|+|++|||+++|+.+...+.||+||||||||||+||++||++|+++|||||+|||+|||+|
T Consensus 221 rpi~~PD~~p~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa~NileYi~tI~~iLk~GGvWiNlGPLlY 300 (369)
T KOG2798|consen 221 RPISIPDIHPASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTAHNILEYIDTIYKILKPGGVWINLGPLLY 300 (369)
T ss_pred ccccCccccccccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeechHHHHHHHHHHHHhccCCcEEEeccceee
Confidence 99999999997 56667789999999999998766667899999999999999999999999999999999999999999
Q ss_pred hhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeecCCCCCCCccccccccccccc
Q 015966 339 HFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQVSFLPCT 396 (397)
Q Consensus 339 h~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~~~Y~~d~~sm~~~~Y~c~~ 396 (397)
||+++.|-.+++++|||.|+|.++++..||++++++.|+++|+.||+||+++.|.|+|
T Consensus 301 HF~d~~g~~~~~siEls~edl~~v~~~~GF~~~ke~~Idt~Y~~nprsm~~~~Y~~~y 358 (369)
T KOG2798|consen 301 HFEDTHGVENEMSIELSLEDLKRVASHRGFEVEKERGIDTTYGTNPRSMMENRYQCHY 358 (369)
T ss_pred eccCCCCCcccccccccHHHHHHHHHhcCcEEEEeeeeecccCCCHHHHhhhccccee
Confidence 9999877677889999999999999999999999999999999999999999999986
|
|
| >PRK11207 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.67 E-value=9.3e-16 Score=141.94 Aligned_cols=136 Identities=19% Similarity=0.227 Sum_probs=95.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|+++..||++|+.|+|+|+|..|+..++-..... .+
T Consensus 30 ~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~--------------------------~~------ 77 (197)
T PRK11207 30 KPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAE--------------------------NL------ 77 (197)
T ss_pred CCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHc--------------------------CC------
Confidence 4579999999999999999999999999999999998766332110 00
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeec---cCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccC
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF---IDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FF---IDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g 345 (397)
.++.+..+|+.++.. .++||+|++.+. ++ ..++..+++.++++|||||++|-+..+ ..++. .
T Consensus 78 -------~~v~~~~~d~~~~~~----~~~fD~I~~~~~~~~~~-~~~~~~~l~~i~~~LkpgG~~~~~~~~--~~~~~-~ 142 (197)
T PRK11207 78 -------DNLHTAVVDLNNLTF----DGEYDFILSTVVLMFLE-AKTIPGLIANMQRCTKPGGYNLIVAAM--DTADY-P 142 (197)
T ss_pred -------CcceEEecChhhCCc----CCCcCEEEEecchhhCC-HHHHHHHHHHHHHHcCCCcEEEEEEEe--cCCCC-C
Confidence 114556677765421 367999998753 33 345889999999999999997542211 11110 0
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 346 QEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 346 ~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
......+.++.+|+.+.++ ||+++.-
T Consensus 143 ~~~~~~~~~~~~el~~~~~--~~~~~~~ 168 (197)
T PRK11207 143 CTVGFPFAFKEGELRRYYE--GWEMVKY 168 (197)
T ss_pred CCCCCCCccCHHHHHHHhC--CCeEEEe
Confidence 0111246799999999996 9999884
|
|
| >PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.3e-16 Score=133.76 Aligned_cols=146 Identities=22% Similarity=0.318 Sum_probs=101.1
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~ 253 (397)
+.+.|.++.+.. .++.+|||+|||.|.++..|++.|++|+|+|+|..|+.. .+
T Consensus 9 ~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~----~~--------------------- 61 (161)
T PF13489_consen 9 YADLLERLLPRL--KPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK----RN--------------------- 61 (161)
T ss_dssp HHHHHHHHHTCT--TTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH----TT---------------------
T ss_pred HHHHHHHHhccc--CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh----hh---------------------
Confidence 444444444321 267899999999999999999999999999999999853 00
Q ss_pred CcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe
Q 015966 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 333 (397)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~ 333 (397)
+. ....... +.. ...++||+|+++..|...+|...+|+.|+++|||||+++-.
T Consensus 62 --------~~--------------~~~~~~~--~~~---~~~~~fD~i~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~~~ 114 (161)
T PF13489_consen 62 --------VV--------------FDNFDAQ--DPP---FPDGSFDLIICNDVLEHLPDPEEFLKELSRLLKPGGYLVIS 114 (161)
T ss_dssp --------SE--------------EEEEECH--THH---CHSSSEEEEEEESSGGGSSHHHHHHHHHHHCEEEEEEEEEE
T ss_pred --------hh--------------hhhhhhh--hhh---ccccchhhHhhHHHHhhcccHHHHHHHHHHhcCCCCEEEEE
Confidence 00 0111111 111 12579999999988877778999999999999999999965
Q ss_pred cCCcch-----hhhc-cCCCC-CccccCCHHHHHHHHHhCCCEEEEE
Q 015966 334 GPLLYH-----FADL-YGQED-EMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 334 GPLlYh-----~~d~-~g~~~-~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
-|..+. +... +.... .....++.++++.+++++||++++|
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~G~~iv~~ 161 (161)
T PF13489_consen 115 DPNRDDPSPRSFLKWRYDRPYGGHVHFFSPDELRQLLEQAGFEIVEE 161 (161)
T ss_dssp EEBTTSHHHHHHHHCCGTCHHTTTTEEBBHHHHHHHHHHTTEEEEE-
T ss_pred EcCCcchhhhHHHhcCCcCccCceeccCCHHHHHHHHHHCCCEEEEC
Confidence 454321 1110 00000 1234689999999999999999875
|
... |
| >PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.5e-15 Score=141.87 Aligned_cols=157 Identities=15% Similarity=0.201 Sum_probs=109.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|.++..||++|..|+|+|+|..|+..|+-.....
T Consensus 44 ~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~---------------------------------- 89 (255)
T PRK11036 44 RPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAK---------------------------------- 89 (255)
T ss_pred CCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc----------------------------------
Confidence 4579999999999999999999999999999999998776322100
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe----cCCcc------
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL----GPLLY------ 338 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~----GPLlY------ 338 (397)
....++.++.+|+.++-. ...++||+|++...+.-..+...+++.++++|||||+++-. ..+.+
T Consensus 90 ----g~~~~v~~~~~d~~~l~~--~~~~~fD~V~~~~vl~~~~~~~~~l~~~~~~LkpgG~l~i~~~n~~~~~~~~~~~~ 163 (255)
T PRK11036 90 ----GVSDNMQFIHCAAQDIAQ--HLETPVDLILFHAVLEWVADPKSVLQTLWSVLRPGGALSLMFYNANGLLMHNMVAG 163 (255)
T ss_pred ----CCccceEEEEcCHHHHhh--hcCCCCCEEEehhHHHhhCCHHHHHHHHHHHcCCCeEEEEEEECccHHHHHHHHcc
Confidence 011236788889877532 22578999998765554456678999999999999999732 11111
Q ss_pred --hhhhc-cCC----CCCccccCCHHHHHHHHHhCCCEEEEEeecC--CCCCCCcc
Q 015966 339 --HFADL-YGQ----EDEMSIELSLEDVKRVALHYGFEFEKEKTIE--TTYTTNPR 385 (397)
Q Consensus 339 --h~~d~-~g~----~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~--~~Y~~d~~ 385 (397)
++... ... .......++.+++.+++++.||+++....+. ..|..+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~p~~~~~~~~l~~~l~~aGf~~~~~~gi~~~~~~~~~~~ 219 (255)
T PRK11036 164 NFDYVQAGMPKRKKRTLSPDYPLDPEQVYQWLEEAGWQIMGKTGVRVFHDYLRNKH 219 (255)
T ss_pred ChHHHHhcCccccccCCCCCCCCCHHHHHHHHHHCCCeEeeeeeEEEEeeccCccc
Confidence 11000 000 0001235899999999999999999876543 45676644
|
|
| >TIGR00477 tehB tellurite resistance protein TehB | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.8e-15 Score=137.68 Aligned_cols=137 Identities=15% Similarity=0.125 Sum_probs=92.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|+++..||++|+.|+|+|+|..|+..++-... .. .+.
T Consensus 30 ~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~---~~-----------------------~~~----- 78 (195)
T TIGR00477 30 APCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKA---RE-----------------------NLP----- 78 (195)
T ss_pred CCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHH---Hh-----------------------CCC-----
Confidence 35699999999999999999999999999999999986653221 00 000
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCC
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~ 346 (397)
+....+|+... .. .++||+|++.+.+. ...++..+++.++++|||||+++-+ .|...+....
T Consensus 79 ---------v~~~~~d~~~~-~~---~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~---~~~~~~~~~~ 142 (195)
T TIGR00477 79 ---------LRTDAYDINAA-AL---NEDYDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIV---AAMDTADYPC 142 (195)
T ss_pred ---------ceeEeccchhc-cc---cCCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEE---EecccCCCCC
Confidence 23445565432 11 35799999874322 2356889999999999999985521 1211111111
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 347 EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 347 ~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
.+...+.++.+||++++. +|+++...
T Consensus 143 ~~~~~~~~~~~el~~~f~--~~~~~~~~ 168 (195)
T TIGR00477 143 HMPFSFTFKEDELRQYYA--DWELLKYN 168 (195)
T ss_pred CCCcCccCCHHHHHHHhC--CCeEEEee
Confidence 122356799999999995 59998843
|
Part of a tellurite-reducing operon tehA and tehB |
| >PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes | Back alignment and domain information |
|---|
Probab=99.64 E-value=1.5e-15 Score=143.98 Aligned_cols=164 Identities=22% Similarity=0.305 Sum_probs=102.3
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccccc
Q 015966 171 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (397)
Q Consensus 171 y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~S 250 (397)
-+.+.+++.+. .. .++.+|||||||.|..+..||++||+|+|+|+|...+..+. ..+.. .|-+.
T Consensus 23 ~p~L~~~~~~l-~~---~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~--~e~~~-------~~~~~--- 86 (218)
T PF05724_consen 23 NPALVEYLDSL-AL---KPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAF--EENNL-------EPTVT--- 86 (218)
T ss_dssp THHHHHHHHHH-TT---STSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHH--HHCTT-------EEECT---
T ss_pred CHHHHHHHHhc-CC---CCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHH--HHhcc-------CCCcc---
Confidence 34455555552 21 25679999999999999999999999999999998876542 11100 00000
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe-ec--cCChhhHHHHHHHHHHhccCC
Q 015966 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-FF--IDTAHNIVEYIEIISRILKDG 327 (397)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~-FF--IDta~Ni~~yi~~I~~~LKPG 327 (397)
. ..... .....++++.+|||+++.. ...++||+|+-+ +| |+. .-..+|.+.+.++||||
T Consensus 87 ----~---~~~~~--------~~~~~~i~~~~gDfF~l~~--~~~g~fD~iyDr~~l~Alpp-~~R~~Ya~~l~~ll~p~ 148 (218)
T PF05724_consen 87 ----S---VGGFK--------RYQAGRITIYCGDFFELPP--EDVGKFDLIYDRTFLCALPP-EMRERYAQQLASLLKPG 148 (218)
T ss_dssp ----T---CTTEE--------EETTSSEEEEES-TTTGGG--SCHHSEEEEEECSSTTTS-G-GGHHHHHHHHHHCEEEE
T ss_pred ----c---cccee--------eecCCceEEEEcccccCCh--hhcCCceEEEEecccccCCH-HHHHHHHHHHHHHhCCC
Confidence 0 00000 0012358999999999753 233689999965 33 443 34789999999999999
Q ss_pred cEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 328 GVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 328 G~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
|.++-+. +.|..... .++ ++.++.+||++++. .+|+++...
T Consensus 149 g~~lLi~-l~~~~~~~-~GP---Pf~v~~~ev~~l~~-~~f~i~~l~ 189 (218)
T PF05724_consen 149 GRGLLIT-LEYPQGEM-EGP---PFSVTEEEVRELFG-PGFEIEELE 189 (218)
T ss_dssp EEEEEEE-EES-CSCS-SSS---S----HHHHHHHHT-TTEEEEEEE
T ss_pred CcEEEEE-EEcCCcCC-CCc---CCCCCHHHHHHHhc-CCcEEEEEe
Confidence 9954221 33432222 123 47899999999998 699998844
|
Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B. |
| >TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family | Back alignment and domain information |
|---|
Probab=99.63 E-value=8.8e-15 Score=138.02 Aligned_cols=150 Identities=15% Similarity=0.138 Sum_probs=97.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||||||.||.+..||++|++|+|+|+|..++..+. +.. ... ....++ .+.
T Consensus 34 ~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~---~~~----~~~------------~~~~~~-----~~~- 88 (213)
T TIGR03840 34 AGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFF---AEN----GLT------------PTVTQQ-----GEF- 88 (213)
T ss_pred CCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHH---HHc----CCC------------cceecc-----ccc-
Confidence 4569999999999999999999999999999999987432 110 000 000000 000
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-ccCC-hhhHHHHHHHHHHhccCCcEEEEecCCcchhhh-ccC
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDT-AHNIVEYIEIISRILKDGGVWINLGPLLYHFAD-LYG 345 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-FIDt-a~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d-~~g 345 (397)
+.....++.+..+||.++.. ...+.||.|+-+- |+.. ......|++.|.++|||||+++-+ .|.+.. ..+
T Consensus 89 --~~~~~~~v~~~~~D~~~~~~--~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~---~~~~~~~~~~ 161 (213)
T TIGR03840 89 --TRYRAGNIEIFCGDFFALTA--ADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLI---TLDYDQSEMA 161 (213)
T ss_pred --eeeecCceEEEEccCCCCCc--ccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEE---EEEcCCCCCC
Confidence 00012348899999988632 1236799998653 3332 233578999999999999975531 122211 112
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 346 QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 346 ~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
++ .+.++.+||++++.. +|+++..+
T Consensus 162 gp---p~~~~~~eL~~~f~~-~~~i~~~~ 186 (213)
T TIGR03840 162 GP---PFSVSPAEVEALYGG-HYEIELLE 186 (213)
T ss_pred Cc---CCCCCHHHHHHHhcC-CceEEEEe
Confidence 22 367999999999964 67777744
|
Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity. |
| >PRK13256 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=6e-15 Score=140.87 Aligned_cols=164 Identities=11% Similarity=0.093 Sum_probs=106.5
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccccc
Q 015966 171 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (397)
Q Consensus 171 y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~S 250 (397)
-+.+.+++.+.-+ .++.||||||||.|+.+..||.+||+|+|+|+|...+..+. . +..+.|-+..
T Consensus 29 np~L~~~~~~l~~----~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~--~-------e~~~~~~~~~-- 93 (226)
T PRK13256 29 NEFLVKHFSKLNI----NDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFF--S-------QNTINYEVIH-- 93 (226)
T ss_pred CHHHHHHHHhcCC----CCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHH--H-------HcCCCcceec--
Confidence 3445566655422 24579999999999999999999999999999998876432 1 0111110000
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe-eccC-ChhhHHHHHHHHHHhccCCc
Q 015966 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-FFID-TAHNIVEYIEIISRILKDGG 328 (397)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~-FFID-ta~Ni~~yi~~I~~~LKPGG 328 (397)
. +.. ......++.+.+|||+++-..+...+.||+|+-+ +|+. ..+-..+|++.+.++|+|||
T Consensus 94 -----~---~~~--------~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg 157 (226)
T PRK13256 94 -----G---NDY--------KLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNT 157 (226)
T ss_pred -----c---ccc--------ceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCc
Confidence 0 000 0011234899999999974211234689999854 3433 22347799999999999999
Q ss_pred EEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 329 VWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 329 ~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
.++-+ .+.+....+++ ++.++.+||++++.. +|++..
T Consensus 158 ~llll---~~~~~~~~~GP---Pf~v~~~e~~~lf~~-~~~i~~ 194 (226)
T PRK13256 158 QILLL---VMEHDKKSQTP---PYSVTQAELIKNFSA-KIKFEL 194 (226)
T ss_pred EEEEE---EEecCCCCCCC---CCcCCHHHHHHhccC-CceEEE
Confidence 99963 34443322333 477999999999965 455544
|
|
| >COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.62 E-value=5.6e-15 Score=142.03 Aligned_cols=154 Identities=22% Similarity=0.243 Sum_probs=112.8
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
|-..+.+.... .++.+|||+|||||.+|..||+.. .+|+|+|+|..||..++-- ..
T Consensus 39 Wr~~~i~~~~~---~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k---~~---------------- 96 (238)
T COG2226 39 WRRALISLLGI---KPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREK---LK---------------- 96 (238)
T ss_pred HHHHHHHhhCC---CCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHH---hh----------------
Confidence 55555554432 268899999999999999999996 7899999999999887621 11
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
+.. ..+++++.||+.++ |+.+++||+|...|=|....++..+|++++|+|||||+++
T Consensus 97 --------------~~~------~~~i~fv~~dAe~L---Pf~D~sFD~vt~~fglrnv~d~~~aL~E~~RVlKpgG~~~ 153 (238)
T COG2226 97 --------------KKG------VQNVEFVVGDAENL---PFPDNSFDAVTISFGLRNVTDIDKALKEMYRVLKPGGRLL 153 (238)
T ss_pred --------------ccC------ccceEEEEechhhC---CCCCCccCEEEeeehhhcCCCHHHHHHHHHHhhcCCeEEE
Confidence 100 01288999999886 3568999999999988888899999999999999999988
Q ss_pred Ee-------cCC--cch---hhhc---cCC----CCC--------ccccCCHHHHHHHHHhCCCEEEE
Q 015966 332 NL-------GPL--LYH---FADL---YGQ----EDE--------MSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 332 N~-------GPL--lYh---~~d~---~g~----~~~--------~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
.+ +++ .|+ +... .|. ..+ ..-.++.+++.+++++.||+.+.
T Consensus 154 vle~~~p~~~~~~~~~~~~~~~~v~P~~g~~~~~~~~~y~yL~eSi~~~p~~~~l~~~~~~~gf~~i~ 221 (238)
T COG2226 154 VLEFSKPDNPVLRKAYILYYFKYVLPLIGKLVAKDAEAYEYLAESIRRFPDQEELKQMIEKAGFEEVR 221 (238)
T ss_pred EEEcCCCCchhhHHHHHHHHHHhHhhhhceeeecChHHHHHHHHHHHhCCCHHHHHHHHHhcCceEEe
Confidence 52 222 122 1100 110 000 11236999999999999999877
|
|
| >PLN02233 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.3e-14 Score=138.40 Aligned_cols=191 Identities=18% Similarity=0.138 Sum_probs=119.8
Q ss_pred CchhhHHHHHHHHHHhcccccChhHHhh----chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeE
Q 015966 142 LADVDKVRCIIRNIVRDWAAEGKTERDQ----CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FIS 214 (397)
Q Consensus 142 ~~d~dkv~stL~q~~RDWS~eG~~ER~~----~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G--f~V 214 (397)
..|+-++.+.++++...++.....-.+. ....+-..+.+.... .++.+|||+|||+|+++..|+++ | ..|
T Consensus 25 ~~~~~~~~~~v~~~f~~~A~~YD~~~~~~s~g~~~~~r~~~~~~~~~---~~~~~VLDlGcGtG~~~~~la~~~~~~~~V 101 (261)
T PLN02233 25 RRDVVKCANERQALFNRIAPVYDNLNDLLSLGQHRIWKRMAVSWSGA---KMGDRVLDLCCGSGDLAFLLSEKVGSDGKV 101 (261)
T ss_pred cCChhhhHHHHHHHHHHhhhHHHHhhhhhcCChhHHHHHHHHHHhCC---CCCCEEEEECCcCCHHHHHHHHHhCCCCEE
Confidence 3566666666665555555433321111 011122222222221 25679999999999999999986 4 389
Q ss_pred EEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCC
Q 015966 215 QGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQ 294 (397)
Q Consensus 215 ~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~ 294 (397)
+|+|+|..||..|+--.+... . ....++.++.+|+.++ |..
T Consensus 102 ~gvD~S~~ml~~A~~r~~~~~---------------------~---------------~~~~~i~~~~~d~~~l---p~~ 142 (261)
T PLN02233 102 MGLDFSSEQLAVAASRQELKA---------------------K---------------SCYKNIEWIEGDATDL---PFD 142 (261)
T ss_pred EEEECCHHHHHHHHHHhhhhh---------------------h---------------ccCCCeEEEEcccccC---CCC
Confidence 999999999987651110000 0 0012377899998775 234
Q ss_pred CCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE--ecC-------Ccchhhh---------ccCCCCC-------
Q 015966 295 VGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN--LGP-------LLYHFAD---------LYGQEDE------- 349 (397)
Q Consensus 295 ~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN--~GP-------LlYh~~d---------~~g~~~~------- 349 (397)
+++||+|++.|-+...+|...++++++++|||||.++- +++ .++.|.- .++..+.
T Consensus 143 ~~sfD~V~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~l~~s 222 (261)
T PLN02233 143 DCYFDAITMGYGLRNVVDRLKAMQEMYRVLKPGSRVSILDFNKSTQPFTTSMQEWMIDNVVVPVATGYGLAKEYEYLKSS 222 (261)
T ss_pred CCCEeEEEEecccccCCCHHHHHHHHHHHcCcCcEEEEEECCCCCcHHHHHHHHHHHhhhhhHHHHHhCChHHHHHHHHH
Confidence 67899999888777777889999999999999999874 221 1111100 0010000
Q ss_pred ccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 350 MSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 350 ~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
....+|.+|+.++++++||+.++..
T Consensus 223 ~~~f~s~~el~~ll~~aGF~~~~~~ 247 (261)
T PLN02233 223 INEYLTGEELEKLALEAGFSSAKHY 247 (261)
T ss_pred HHhcCCHHHHHHHHHHCCCCEEEEE
Confidence 0124799999999999999988754
|
|
| >PRK13255 thiopurine S-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.8e-14 Score=136.30 Aligned_cols=169 Identities=17% Similarity=0.145 Sum_probs=106.3
Q ss_pred hchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccc
Q 015966 169 QCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 248 (397)
Q Consensus 169 ~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~ 248 (397)
...+.+.+++.+... .++.+|||||||.||.+..||++|++|+|+|+|..++..+. ...... +
T Consensus 21 ~p~~~L~~~~~~~~~----~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~--~~~~l~-------~---- 83 (218)
T PRK13255 21 EVNPLLQKYWPALAL----PAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFF--AENGLT-------P---- 83 (218)
T ss_pred CCCHHHHHHHHhhCC----CCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHH--HHcCCC-------c----
Confidence 345566666655322 14579999999999999999999999999999999886431 110000 0
Q ss_pred ccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe-eccC-ChhhHHHHHHHHHHhccC
Q 015966 249 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-FFID-TAHNIVEYIEIISRILKD 326 (397)
Q Consensus 249 ~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~-FFID-ta~Ni~~yi~~I~~~LKP 326 (397)
...+..........++.+.++|+.++-. ...+.||.|+-. +|+. ..+...+|++.|.++|||
T Consensus 84 --------------~~~~~~~~~~~~~~~v~~~~~D~~~l~~--~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~p 147 (218)
T PRK13255 84 --------------QTRQSGEFEHYQAGEITIYCGDFFALTA--ADLADVDAVYDRAALIALPEEMRERYVQQLAALLPA 147 (218)
T ss_pred --------------cccccccccccccCceEEEECcccCCCc--ccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCC
Confidence 0000000000112348899999988632 223689999943 2222 233467999999999999
Q ss_pred CcEEEEecCCcchhh-hccCCCCCccccCCHHHHHHHHHhCCCEEEEEeecC
Q 015966 327 GGVWINLGPLLYHFA-DLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIE 377 (397)
Q Consensus 327 GG~wIN~GPLlYh~~-d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~ 377 (397)
||+++-+ .+.+. +..+++ ++.++.+||++++.. +|+++..+...
T Consensus 148 gG~~~l~---~~~~~~~~~~gP---p~~~~~~el~~~~~~-~~~i~~~~~~~ 192 (218)
T PRK13255 148 GCRGLLV---TLDYPQEELAGP---PFSVSDEEVEALYAG-CFEIELLERQD 192 (218)
T ss_pred CCeEEEE---EEEeCCccCCCC---CCCCCHHHHHHHhcC-CceEEEeeecc
Confidence 9864421 11122 112223 367999999999964 48888755443
|
|
| >PRK10258 biotin biosynthesis protein BioC; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=3.6e-14 Score=134.67 Aligned_cols=174 Identities=11% Similarity=0.109 Sum_probs=116.3
Q ss_pred hhHHHHHHHHHHhcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHH
Q 015966 145 VDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMM 224 (397)
Q Consensus 145 ~dkv~stL~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML 224 (397)
..+|+......+..|..... ....+.+.|.+.++. .+..+|||+|||+|.++..|++.|..|+|+|+|..|+
T Consensus 6 k~~i~~~F~~aa~~Y~~~~~-----~q~~~a~~l~~~l~~---~~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l 77 (251)
T PRK10258 6 KQAIAAAFGRAAAHYEQHAE-----LQRQSADALLAMLPQ---RKFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPML 77 (251)
T ss_pred HHHHHHHHHHHHHhHhHHHH-----HHHHHHHHHHHhcCc---cCCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHH
Confidence 34555444444445543222 223466666666653 2467899999999999999999999999999999999
Q ss_pred HHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe
Q 015966 225 ICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC 304 (397)
Q Consensus 225 ~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~ 304 (397)
..++-.. + ...++.+|+.++. ..+++||+|++.
T Consensus 78 ~~a~~~~---------------------------------~-----------~~~~~~~d~~~~~---~~~~~fD~V~s~ 110 (251)
T PRK10258 78 AQARQKD---------------------------------A-----------ADHYLAGDIESLP---LATATFDLAWSN 110 (251)
T ss_pred HHHHhhC---------------------------------C-----------CCCEEEcCcccCc---CCCCcEEEEEEC
Confidence 7655110 0 0245677876642 235789999998
Q ss_pred eccCChhhHHHHHHHHHHhccCCcEEEEe--cCCcch-hhhc---cCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 305 FFIDTAHNIVEYIEIISRILKDGGVWINL--GPLLYH-FADL---YGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 305 FFIDta~Ni~~yi~~I~~~LKPGG~wIN~--GPLlYh-~~d~---~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
+.+....++...|..++++|||||+++-. ++-.+. +... .+..+...--++.+++..++...||+...+
T Consensus 111 ~~l~~~~d~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~el~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 185 (251)
T PRK10258 111 LAVQWCGNLSTALRELYRVVRPGGVVAFTTLVQGSLPELHQAWQAVDERPHANRFLPPDAIEQALNGWRYQHHIQ 185 (251)
T ss_pred chhhhcCCHHHHHHHHHHHcCCCeEEEEEeCCCCchHHHHHHHHHhccCCccccCCCHHHHHHHHHhCCceeeee
Confidence 87766667889999999999999999953 321111 1110 011111122479999999999888876443
|
|
| >PRK14103 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=2e-14 Score=137.18 Aligned_cols=134 Identities=14% Similarity=0.069 Sum_probs=96.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++..|+++ |..|+|+|+|..|+..|+-
T Consensus 29 ~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~------------------------------------- 71 (255)
T PRK14103 29 RARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARE------------------------------------- 71 (255)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHh-------------------------------------
Confidence 5679999999999999999998 7899999999999976540
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCC-----cch--
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL-----LYH-- 339 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPL-----lYh-- 339 (397)
.++.+..+|+.++.. .++||+|++.+.+...++....++.++++|||||+++-.-|. .+.
T Consensus 72 ---------~~~~~~~~d~~~~~~----~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~ 138 (255)
T PRK14103 72 ---------RGVDARTGDVRDWKP----KPDTDVVVSNAALQWVPEHADLLVRWVDELAPGSWIAVQVPGNFDAPSHAAV 138 (255)
T ss_pred ---------cCCcEEEcChhhCCC----CCCceEEEEehhhhhCCCHHHHHHHHHHhCCCCcEEEEEcCCCcCChhHHHH
Confidence 014567788876532 478999999876655567789999999999999999842111 110
Q ss_pred --------hhhccCCCC--CccccCCHHHHHHHHHhCCCEEEE
Q 015966 340 --------FADLYGQED--EMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 340 --------~~d~~g~~~--~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
|.......+ ......+.+++.++++++||++..
T Consensus 139 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~ 181 (255)
T PRK14103 139 RALARREPWAKLLRDIPFRVGAVVQTPAGYAELLTDAGCKVDA 181 (255)
T ss_pred HHHhccCchhHHhcccccccCcCCCCHHHHHHHHHhCCCeEEE
Confidence 000000000 012246899999999999998654
|
|
| >PLN02396 hexaprenyldihydroxybenzoate methyltransferase | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.7e-14 Score=140.97 Aligned_cols=160 Identities=14% Similarity=0.129 Sum_probs=110.1
Q ss_pred HHHHHHhhCCCCC----CCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccc
Q 015966 174 ILEELDALFPNRS----KESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (397)
Q Consensus 174 Il~~L~~~~p~~~----~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~ 249 (397)
|.+.|.++++... ..++.+|||+|||+|+++..||+.|+.|+|+|.|..|+..|+-... .
T Consensus 112 i~~~l~~~~~~~~~~~~~~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~---~------------- 175 (322)
T PLN02396 112 IRSTLCRHFSKDPSSAKPFEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHAD---M------------- 175 (322)
T ss_pred HHHHHHHHhccchhhccCCCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHH---h-------------
Confidence 4445555554321 1245699999999999999999999999999999999987762110 0
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcE
Q 015966 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGV 329 (397)
Q Consensus 250 Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~ 329 (397)
+ . ...++.++.+|+.++- ...++||+|++...|....+...+++.++++|||||+
T Consensus 176 -------~---~------------~~~~i~~~~~dae~l~---~~~~~FD~Vi~~~vLeHv~d~~~~L~~l~r~LkPGG~ 230 (322)
T PLN02396 176 -------D---P------------VTSTIEYLCTTAEKLA---DEGRKFDAVLSLEVIEHVANPAEFCKSLSALTIPNGA 230 (322)
T ss_pred -------c---C------------cccceeEEecCHHHhh---hccCCCCEEEEhhHHHhcCCHHHHHHHHHHHcCCCcE
Confidence 0 0 0123778889987753 2357899999987776666788999999999999999
Q ss_pred EEEe--cCCc--chhh---hc--cC-CCCCc---cccCCHHHHHHHHHhCCCEEEEEe
Q 015966 330 WINL--GPLL--YHFA---DL--YG-QEDEM---SIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 330 wIN~--GPLl--Yh~~---d~--~g-~~~~~---~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
+|-. ..-. |... .. .. .+... .-.++.+|+.+++++.||++++..
T Consensus 231 liist~nr~~~~~~~~i~~~eyi~~~lp~gth~~~~f~tp~eL~~lL~~aGf~i~~~~ 288 (322)
T PLN02396 231 TVLSTINRTMRAYASTIVGAEYILRWLPKGTHQWSSFVTPEELSMILQRASVDVKEMA 288 (322)
T ss_pred EEEEECCcCHHHHHHhhhhHHHHHhcCCCCCcCccCCCCHHHHHHHHHHcCCeEEEEe
Confidence 9932 1110 1000 00 00 01111 124799999999999999999865
|
|
| >PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] | Back alignment and domain information |
|---|
Probab=99.60 E-value=2.4e-15 Score=143.70 Aligned_cols=143 Identities=24% Similarity=0.289 Sum_probs=75.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||||.++..|+++ | ..|+|+|+|..||..|+--+... +
T Consensus 47 ~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~--------------------------~---- 96 (233)
T PF01209_consen 47 PGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKRE--------------------------G---- 96 (233)
T ss_dssp S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHT--------------------------T----
T ss_pred CCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhh--------------------------C----
Confidence 5779999999999999999986 3 58999999999998877322100 0
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe------cCCc--
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL------GPLL-- 337 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~------GPLl-- 337 (397)
..++.+++||..++- ..+++||+|++.|-|...+|+...+++++|+|||||+++-+ .|++
T Consensus 97 ---------~~~i~~v~~da~~lp---~~d~sfD~v~~~fglrn~~d~~~~l~E~~RVLkPGG~l~ile~~~p~~~~~~~ 164 (233)
T PF01209_consen 97 ---------LQNIEFVQGDAEDLP---FPDNSFDAVTCSFGLRNFPDRERALREMYRVLKPGGRLVILEFSKPRNPLLRA 164 (233)
T ss_dssp -----------SEEEEE-BTTB-----S-TT-EEEEEEES-GGG-SSHHHHHHHHHHHEEEEEEEEEEEEEB-SSHHHHH
T ss_pred ---------CCCeeEEEcCHHHhc---CCCCceeEEEHHhhHHhhCCHHHHHHHHHHHcCCCeEEEEeeccCCCCchhhc
Confidence 013789999988863 34799999998887887788999999999999999999841 1111
Q ss_pred -chh-h----hccC----CC-C-----Cccc--cCCHHHHHHHHHhCCCEEEEE
Q 015966 338 -YHF-A----DLYG----QE-D-----EMSI--ELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 338 -Yh~-~----d~~g----~~-~-----~~~i--eLS~EEl~~ll~~~GFeii~e 373 (397)
|.+ - ...| +. . ..++ -.+.+|+.++++++||+.++-
T Consensus 165 ~~~~y~~~ilP~~g~l~~~~~~~Y~yL~~Si~~f~~~~~~~~~l~~~Gf~~v~~ 218 (233)
T PF01209_consen 165 LYKFYFKYILPLIGRLLSGDREAYRYLPESIRRFPSPEELKELLEEAGFKNVEY 218 (233)
T ss_dssp HHHH--------------------------------------------------
T ss_pred eeeeeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 110 0 0001 00 0 0122 258999999999999997663
|
Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C. |
| >PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A | Back alignment and domain information |
|---|
Probab=99.59 E-value=8.4e-15 Score=121.02 Aligned_cols=101 Identities=23% Similarity=0.318 Sum_probs=78.1
Q ss_pred CCCeEEEecCCCChhHHHHHH--cCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISH--LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~--~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|+++.++++ .|.+|+|+|+|+.|+..++-.... .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~---~----------------------------- 48 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAE---E----------------------------- 48 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHH---T-----------------------------
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHh---c-----------------------------
Confidence 357999999999999999999 899999999999999877732200 0
Q ss_pred CCCCCCCCCCcceeEeccc-ccccCCCCCCCCccEEEEeec-c---CChhhHHHHHHHHHHhccCCcEEE
Q 015966 267 IHPASAGITEGFSMCGGDF-VEVYSDPSQVGAWDAVVTCFF-I---DTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF-~ely~~~~~~~~fD~VvT~FF-I---Dta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
....++.++.+|+ .+.. ..+.||+|++..| + -..++..++++.+++.|||||++|
T Consensus 49 ------~~~~~i~~~~~d~~~~~~----~~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~lv 108 (112)
T PF12847_consen 49 ------GLSDRITFVQGDAEFDPD----FLEPFDLVICSGFTLHFLLPLDERRRVLERIRRLLKPGGRLV 108 (112)
T ss_dssp ------TTTTTEEEEESCCHGGTT----TSSCEEEEEECSGSGGGCCHHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ------CCCCCeEEEECccccCcc----cCCCCCEEEECCCccccccchhHHHHHHHHHHHhcCCCcEEE
Confidence 1123588999999 3322 2467999998872 2 112567889999999999999998
|
... |
| >PLN02244 tocopherol O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.57 E-value=5.9e-14 Score=140.43 Aligned_cols=145 Identities=15% Similarity=0.115 Sum_probs=102.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|.++..||++ |..|+|+|+|..|+..++-.....
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~--------------------------------- 164 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQ--------------------------------- 164 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhc---------------------------------
Confidence 5679999999999999999997 899999999999998766332110
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCc--ch-hhhcc
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLL--YH-FADLY 344 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLl--Yh-~~d~~ 344 (397)
....++.+..+|+.++. ..+++||+|++..-+....+...++++++++|||||+++-..... .. .+...
T Consensus 165 -----g~~~~v~~~~~D~~~~~---~~~~~FD~V~s~~~~~h~~d~~~~l~e~~rvLkpGG~lvi~~~~~~~~~~~~~~l 236 (340)
T PLN02244 165 -----GLSDKVSFQVADALNQP---FEDGQFDLVWSMESGEHMPDKRKFVQELARVAAPGGRIIIVTWCHRDLEPGETSL 236 (340)
T ss_pred -----CCCCceEEEEcCcccCC---CCCCCccEEEECCchhccCCHHHHHHHHHHHcCCCcEEEEEEecccccccccccC
Confidence 01123778889987752 346899999987666555678899999999999999998521110 00 00000
Q ss_pred -----------CCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 345 -----------GQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 345 -----------g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
...-...-..+.+++.++++++||+.++..
T Consensus 237 ~~~~~~~~~~i~~~~~~p~~~s~~~~~~~l~~aGf~~v~~~ 277 (340)
T PLN02244 237 KPDEQKLLDKICAAYYLPAWCSTSDYVKLAESLGLQDIKTE 277 (340)
T ss_pred CHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHCCCCeeEee
Confidence 000000112489999999999999988754
|
|
| >PRK01683 trans-aconitate 2-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.7e-13 Score=130.34 Aligned_cols=138 Identities=12% Similarity=0.019 Sum_probs=98.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|+++..||++ +..|+|+|+|..|+..++..+
T Consensus 31 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~----------------------------------- 75 (258)
T PRK01683 31 NPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL----------------------------------- 75 (258)
T ss_pred CCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----------------------------------
Confidence 5679999999999999999987 578999999999997655110
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcc---h---h
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLY---H---F 340 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlY---h---~ 340 (397)
.++.+..+|+.++.. .++||+|++.+.++-..+...+++.++++|||||+++-..|-.+ . .
T Consensus 76 ---------~~~~~~~~d~~~~~~----~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~~~~~~~~~~~~~~~~~~ 142 (258)
T PRK01683 76 ---------PDCQFVEADIASWQP----PQALDLIFANASLQWLPDHLELFPRLVSLLAPGGVLAVQMPDNLDEPSHVLM 142 (258)
T ss_pred ---------CCCeEEECchhccCC----CCCccEEEEccChhhCCCHHHHHHHHHHhcCCCcEEEEECCCCCCCHHHHHH
Confidence 014567788766532 36899999988776666778999999999999999986433211 0 0
Q ss_pred ---------hhccCCCC-CccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 341 ---------ADLYGQED-EMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 341 ---------~d~~g~~~-~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
...++... ......+.+++.+++...||.+...+
T Consensus 143 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~v~~~~ 186 (258)
T PRK01683 143 REVAENGPWEQNLPDRGARRAPLPPPHAYYDALAPAACRVDIWH 186 (258)
T ss_pred HHHHccCchHHHhccccccCcCCCCHHHHHHHHHhCCCceeeee
Confidence 00000000 11234688999999999999875544
|
|
| >PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.9e-14 Score=112.82 Aligned_cols=93 Identities=27% Similarity=0.355 Sum_probs=72.6
Q ss_pred EEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCC
Q 015966 194 LVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASA 272 (397)
Q Consensus 194 LvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~ 272 (397)
||+|||+|+.+..|+++ +..|+|+|+|..|+..++-...
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~---------------------------------------- 40 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLK---------------------------------------- 40 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTT----------------------------------------
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccc----------------------------------------
Confidence 89999999999999999 9999999999999976663211
Q ss_pred CCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 273 GITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 273 ~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
..+.++..+|+.++ |..+++||+|+++..+.-.++...++++|+|+|||||++|
T Consensus 41 --~~~~~~~~~d~~~l---~~~~~sfD~v~~~~~~~~~~~~~~~l~e~~rvLk~gG~l~ 94 (95)
T PF08241_consen 41 --NEGVSFRQGDAEDL---PFPDNSFDVVFSNSVLHHLEDPEAALREIYRVLKPGGRLV 94 (95)
T ss_dssp --TSTEEEEESBTTSS---SS-TT-EEEEEEESHGGGSSHHHHHHHHHHHHEEEEEEEE
T ss_pred --ccCchheeehHHhC---ccccccccccccccceeeccCHHHHHHHHHHHcCcCeEEe
Confidence 01244788898776 2457899999988655444789999999999999999987
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B .... |
| >TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.4e-13 Score=125.17 Aligned_cols=185 Identities=14% Similarity=0.189 Sum_probs=115.8
Q ss_pred hhHHHHHHHHHHhcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCH
Q 015966 145 VDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSY 221 (397)
Q Consensus 145 ~dkv~stL~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~ 221 (397)
..+|+....+++..|-.-....--..+..+.+.+.+.+.. .++.+|||+|||+|.++..|++. +..|+|+|+|.
T Consensus 4 ~~~~~~~f~~~a~~yd~~~~~~~~~~~~~~~~~~l~~l~~---~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~ 80 (231)
T TIGR02752 4 EERVHKVFEKIYKKYDRMNSVISFQRHKKWRKDTMKRMNV---QAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSE 80 (231)
T ss_pred HHHHHHHHHHhhhHHhHHHHHhcCCchHHHHHHHHHhcCC---CCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCH
Confidence 3566666666666665311100000011122223333321 25679999999999999999976 35899999999
Q ss_pred HHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEE
Q 015966 222 YMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAV 301 (397)
Q Consensus 222 ~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~V 301 (397)
.|+..++-.+... . ..++.++.+|+.++- ...++||+|
T Consensus 81 ~~~~~a~~~~~~~----------------------------~-----------~~~v~~~~~d~~~~~---~~~~~fD~V 118 (231)
T TIGR02752 81 NMLSVGRQKVKDA----------------------------G-----------LHNVELVHGNAMELP---FDDNSFDYV 118 (231)
T ss_pred HHHHHHHHHHHhc----------------------------C-----------CCceEEEEechhcCC---CCCCCccEE
Confidence 9997766322100 0 012677888887642 235789999
Q ss_pred EEeeccCChhhHHHHHHHHHHhccCCcEEEEe--c-CCcchhhh---------------ccCCC--------CCccccCC
Q 015966 302 VTCFFIDTAHNIVEYIEIISRILKDGGVWINL--G-PLLYHFAD---------------LYGQE--------DEMSIELS 355 (397)
Q Consensus 302 vT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~--G-PLlYh~~d---------------~~g~~--------~~~~ieLS 355 (397)
++.+.+...++..+.++.+.++|||||++|-+ + |-...+.. ..+.. +...-.++
T Consensus 119 ~~~~~l~~~~~~~~~l~~~~~~Lk~gG~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (231)
T TIGR02752 119 TIGFGLRNVPDYMQVLREMYRVVKPGGKVVCLETSQPTIPGFKQLYFFYFKYIMPLFGKLFAKSYKEYSWLQESTRDFPG 198 (231)
T ss_pred EEecccccCCCHHHHHHHHHHHcCcCeEEEEEECCCCCChHHHHHHHHHHcChhHHhhHHhcCCHHHHHHHHHHHHHcCC
Confidence 98887777777889999999999999999842 1 11100000 00000 00011358
Q ss_pred HHHHHHHHHhCCCEEEEEe
Q 015966 356 LEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 356 ~EEl~~ll~~~GFeii~e~ 374 (397)
.+|++++++++||+.++.+
T Consensus 199 ~~~l~~~l~~aGf~~~~~~ 217 (231)
T TIGR02752 199 MDELAEMFQEAGFKDVEVK 217 (231)
T ss_pred HHHHHHHHHHcCCCeeEEE
Confidence 8999999999999988754
|
MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species. |
| >PRK15068 tRNA mo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.6e-13 Score=136.75 Aligned_cols=143 Identities=15% Similarity=0.103 Sum_probs=99.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|++++.+|..|.. |+|+|.|..|+..++.+.+...
T Consensus 122 ~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~-------------------------------- 169 (322)
T PRK15068 122 KGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLG-------------------------------- 169 (322)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcC--------------------------------
Confidence 4679999999999999999999974 9999999999865443211100
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe-----cC---Ccch
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL-----GP---LLYH 339 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~-----GP---LlYh 339 (397)
...++.++.+|+.++- . .+.||+|++.-.+....+...+|+.++++|||||.+|-- |. .++.
T Consensus 170 ------~~~~i~~~~~d~e~lp---~-~~~FD~V~s~~vl~H~~dp~~~L~~l~~~LkpGG~lvl~~~~i~~~~~~~l~p 239 (322)
T PRK15068 170 ------NDQRAHLLPLGIEQLP---A-LKAFDTVFSMGVLYHRRSPLDHLKQLKDQLVPGGELVLETLVIDGDENTVLVP 239 (322)
T ss_pred ------CCCCeEEEeCCHHHCC---C-cCCcCEEEECChhhccCCHHHHHHHHHHhcCCCcEEEEEEEEecCCCccccCc
Confidence 0012677888887652 2 578999998754444456789999999999999999841 10 0111
Q ss_pred hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 340 FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 340 ~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
.+.+..-....+..|.+++..+++++||+.++..
T Consensus 240 -~~~y~~~~~~~~lps~~~l~~~L~~aGF~~i~~~ 273 (322)
T PRK15068 240 -GDRYAKMRNVYFIPSVPALKNWLERAGFKDVRIV 273 (322)
T ss_pred -hhHHhcCccceeCCCHHHHHHHHHHcCCceEEEE
Confidence 0111111111234599999999999999998754
|
|
| >PRK12335 tellurite resistance protein TehB; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-13 Score=134.42 Aligned_cols=134 Identities=17% Similarity=0.182 Sum_probs=94.7
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCC
Q 015966 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p 269 (397)
+.+|||+|||+|+++..||++|++|+|+|+|..|+..++-... . . .+
T Consensus 121 ~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~---~-~----------------------~l------- 167 (287)
T PRK12335 121 PGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAE---K-E----------------------NL------- 167 (287)
T ss_pred CCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHH---H-c----------------------CC-------
Confidence 3599999999999999999999999999999999986652221 0 0 00
Q ss_pred CCCCCCCcceeEecccccccCCCCCCCCccEEEEee---ccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCC
Q 015966 270 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (397)
Q Consensus 270 ~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~ 346 (397)
++.+..+|+.+.. ..++||+|++.+ |++ .+++..+++.++++|||||+++-+.+.- .+....
T Consensus 168 -------~v~~~~~D~~~~~----~~~~fD~I~~~~vl~~l~-~~~~~~~l~~~~~~LkpgG~~l~v~~~~---~~~~~~ 232 (287)
T PRK12335 168 -------NIRTGLYDINSAS----IQEEYDFILSTVVLMFLN-RERIPAIIKNMQEHTNPGGYNLIVCAMD---TEDYPC 232 (287)
T ss_pred -------ceEEEEechhccc----ccCCccEEEEcchhhhCC-HHHHHHHHHHHHHhcCCCcEEEEEEecc---cccCCC
Confidence 1455667765532 147899999764 444 3568899999999999999966432211 111111
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 347 EDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 347 ~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
++.....++.+||++++. +|++++-
T Consensus 233 ~~p~~~~~~~~el~~~~~--~~~i~~~ 257 (287)
T PRK12335 233 PMPFSFTFKEGELKDYYQ--DWEIVKY 257 (287)
T ss_pred CCCCCcccCHHHHHHHhC--CCEEEEE
Confidence 222356699999999995 4999883
|
|
| >PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-13 Score=128.64 Aligned_cols=134 Identities=18% Similarity=0.169 Sum_probs=88.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||.||.+..||++||+|+|+|.|...|...+-+.+. . .+.
T Consensus 30 ~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~----~----------------------~l~----- 78 (192)
T PF03848_consen 30 KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEE----E----------------------GLD----- 78 (192)
T ss_dssp -SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHH----T----------------------T-T-----
T ss_pred CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhh----c----------------------Cce-----
Confidence 567999999999999999999999999999999998754433211 1 111
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEe---eccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccC
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~---FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g 345 (397)
++....|+.+... .+.||+|++. .|++. +.+...++.|...|||||+.+-... ...++++
T Consensus 79 ---------i~~~~~Dl~~~~~----~~~yD~I~st~v~~fL~~-~~~~~i~~~m~~~~~pGG~~li~~~---~~~~d~p 141 (192)
T PF03848_consen 79 ---------IRTRVADLNDFDF----PEEYDFIVSTVVFMFLQR-ELRPQIIENMKAATKPGGYNLIVTF---METPDYP 141 (192)
T ss_dssp ---------EEEEE-BGCCBS-----TTTEEEEEEESSGGGS-G-GGHHHHHHHHHHTEEEEEEEEEEEE---B--SSS-
T ss_pred ---------eEEEEecchhccc----cCCcCEEEEEEEeccCCH-HHHHHHHHHHHhhcCCcEEEEEEEe---cccCCCC
Confidence 5566778766422 3689999863 47775 4688999999999999999774211 1111222
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 346 QEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 346 ~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
.+....+-+...||++... ||+|++
T Consensus 142 ~~~~~~f~~~~~EL~~~y~--dW~il~ 166 (192)
T PF03848_consen 142 CPSPFPFLLKPGELREYYA--DWEILK 166 (192)
T ss_dssp -SS--S--B-TTHHHHHTT--TSEEEE
T ss_pred CCCCCCcccCHHHHHHHhC--CCeEEE
Confidence 2222356678899999984 799988
|
When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A. |
| >TIGR00452 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.52 E-value=3e-13 Score=134.82 Aligned_cols=143 Identities=15% Similarity=0.068 Sum_probs=97.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|+++..++..|. .|+|+|.|..|+..++.+.+....
T Consensus 121 ~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~------------------------------- 169 (314)
T TIGR00452 121 KGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDN------------------------------- 169 (314)
T ss_pred CCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhcc-------------------------------
Confidence 567999999999999999999997 599999999998654432211000
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe-----cCCc---ch
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL-----GPLL---YH 339 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~-----GPLl---Yh 339 (397)
..++.+..+++.++-. ...||+|++...+....+..++|+.++++|||||.+|-- |+.. ..
T Consensus 170 -------~~~v~~~~~~ie~lp~----~~~FD~V~s~gvL~H~~dp~~~L~el~r~LkpGG~Lvletl~i~g~~~~~l~p 238 (314)
T TIGR00452 170 -------DKRAILEPLGIEQLHE----LYAFDTVFSMGVLYHRKSPLEHLKQLKHQLVIKGELVLETLVIDGDLNTVLVP 238 (314)
T ss_pred -------CCCeEEEECCHHHCCC----CCCcCEEEEcchhhccCCHHHHHHHHHHhcCCCCEEEEEEEEecCccccccCc
Confidence 0114455566655421 357999998865555567789999999999999999941 2110 00
Q ss_pred hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 340 FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 340 ~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
. +.+.......+-.|.++++.+++++||+.++..
T Consensus 239 ~-~ry~k~~nv~flpS~~~L~~~L~~aGF~~V~i~ 272 (314)
T TIGR00452 239 K-DRYAKMKNVYFIPSVSALKNWLEKVGFENFRIL 272 (314)
T ss_pred h-HHHHhccccccCCCHHHHHHHHHHCCCeEEEEE
Confidence 0 000000111234699999999999999998743
|
Known examples to date are restricted to the proteobacteria. |
| >TIGR00740 methyltransferase, putative | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.3e-12 Score=123.52 Aligned_cols=141 Identities=15% Similarity=0.084 Sum_probs=96.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCcccccc
Q 015966 189 SPPACLVPGAGLGRLALEISHL----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~----Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~i 264 (397)
++.+|||+|||+|.++..|+++ +..++|+|+|..|+..|+..++..
T Consensus 53 ~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~------------------------------ 102 (239)
T TIGR00740 53 PDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY------------------------------ 102 (239)
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc------------------------------
Confidence 4568999999999999999985 568999999999998776332110
Q ss_pred CCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCCcEEEEecCCc-----
Q 015966 265 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLL----- 337 (397)
Q Consensus 265 PDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPGG~wIN~GPLl----- 337 (397)
....++.++.+|+.++.. ..+|+|++.+-+. ...+...+++.++++|||||+++...+..
T Consensus 103 --------~~~~~v~~~~~d~~~~~~-----~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~~~~~~ 169 (239)
T TIGR00740 103 --------HSEIPVEILCNDIRHVEI-----KNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTK 169 (239)
T ss_pred --------CCCCCeEEEECChhhCCC-----CCCCEEeeecchhhCCHHHHHHHHHHHHHhcCCCeEEEEeecccCCCHh
Confidence 001236788999987532 3589888766332 22457899999999999999999653321
Q ss_pred -----ch----hhhccCCCC-----------CccccCCHHHHHHHHHhCCCEEEE
Q 015966 338 -----YH----FADLYGQED-----------EMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 338 -----Yh----~~d~~g~~~-----------~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
.. |....|..+ .....+|.+|++.+++++||+.+.
T Consensus 170 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGF~~~~ 224 (239)
T TIGR00740 170 INHLLIDLHHQFKRANGYSELEISQKRTALENVMRTDSIETHKARLKNVGFSHVE 224 (239)
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhccCCCCCHHHHHHHHHHcCCchHH
Confidence 10 100001000 012357999999999999998543
|
A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily. |
| >smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes | Back alignment and domain information |
|---|
Probab=99.48 E-value=6.6e-13 Score=123.44 Aligned_cols=146 Identities=15% Similarity=0.134 Sum_probs=101.8
Q ss_pred eEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCC
Q 015966 192 ACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (397)
Q Consensus 192 rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p 269 (397)
+|||+|||+|.++..+|+. +..|+|+|+|..|+..++-.+...
T Consensus 2 ~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~----------------------------------- 46 (224)
T smart00828 2 RVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRAL----------------------------------- 46 (224)
T ss_pred eEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc-----------------------------------
Confidence 7999999999999999987 478999999999987665221100
Q ss_pred CCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCC
Q 015966 270 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDE 349 (397)
Q Consensus 270 ~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~ 349 (397)
....++++..+|+.+. .. .++||+|++...+....+...+|+.++++|||||+++-..+..-.+... +....
T Consensus 47 ---gl~~~i~~~~~d~~~~-~~---~~~fD~I~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~-~~~~~ 118 (224)
T smart00828 47 ---GLQGRIRIFYRDSAKD-PF---PDTYDLVFGFEVIHHIKDKMDLFSNISRHLKDGGHLVLADFIANLLSAI-EHEET 118 (224)
T ss_pred ---CCCcceEEEecccccC-CC---CCCCCEeehHHHHHhCCCHHHHHHHHHHHcCCCCEEEEEEcccccCccc-ccccc
Confidence 0112367788887553 11 3589999987655555667899999999999999999644321001110 00111
Q ss_pred ccccCCHHHHHHHHHhCCCEEEEEeecCCCC
Q 015966 350 MSIELSLEDVKRVALHYGFEFEKEKTIETTY 380 (397)
Q Consensus 350 ~~ieLS~EEl~~ll~~~GFeii~e~~i~~~Y 380 (397)
....++.+++.+++++.||++++...+...|
T Consensus 119 ~~~~~s~~~~~~~l~~~Gf~~~~~~~~~~~~ 149 (224)
T smart00828 119 TSYLVTREEWAELLARNNLRVVEGVDASLEI 149 (224)
T ss_pred ccccCCHHHHHHHHHHCCCeEEEeEECcHhH
Confidence 1345799999999999999999865443333
|
|
| >PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=6.7e-13 Score=126.81 Aligned_cols=140 Identities=19% Similarity=0.237 Sum_probs=96.7
Q ss_pred CCCeEEEecCCCChhHHHHHH----cCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCcccccc
Q 015966 189 SPPACLVPGAGLGRLALEISH----LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~----~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~i 264 (397)
++.+|||+|||+|.++..|++ .|..|+|+|+|..|+..|+-.+...
T Consensus 56 ~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~------------------------------ 105 (247)
T PRK15451 56 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY------------------------------ 105 (247)
T ss_pred CCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhc------------------------------
Confidence 467999999999999998887 3679999999999998776322110
Q ss_pred CCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee---ccCChhhHHHHHHHHHHhccCCcEEEEe--------
Q 015966 265 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWINL-------- 333 (397)
Q Consensus 265 PDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yi~~I~~~LKPGG~wIN~-------- 333 (397)
....++.++.+|+.++- ...+|+|++++ |++. .....++++|+++|||||.+|..
T Consensus 106 --------~~~~~v~~~~~d~~~~~-----~~~~D~vv~~~~l~~l~~-~~~~~~l~~i~~~LkpGG~l~l~e~~~~~~~ 171 (247)
T PRK15451 106 --------KAPTPVDVIEGDIRDIA-----IENASMVVLNFTLQFLEP-SERQALLDKIYQGLNPGGALVLSEKFSFEDA 171 (247)
T ss_pred --------CCCCCeEEEeCChhhCC-----CCCCCEEehhhHHHhCCH-HHHHHHHHHHHHhcCCCCEEEEEEecCCCcc
Confidence 00123778899987752 14589988765 5553 44678999999999999999963
Q ss_pred --cCCcch----hhhccCCCC-----------CccccCCHHHHHHHHHhCCCEEEE
Q 015966 334 --GPLLYH----FADLYGQED-----------EMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 334 --GPLlYh----~~d~~g~~~-----------~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
+++++. +....|-.. .....+|.++..++|+++||+-+.
T Consensus 172 ~~~~~~~~~~~~~~~~~g~s~~ei~~~~~~~~~~~~~~~~~~~~~~L~~aGF~~v~ 227 (247)
T PRK15451 172 KVGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSE 227 (247)
T ss_pred hhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHhhcccCCHHHHHHHHHHcCchhHH
Confidence 332221 100011100 012236999999999999997543
|
|
| >PLN02585 magnesium protoporphyrin IX methyltransferase | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.3e-12 Score=130.35 Aligned_cols=150 Identities=15% Similarity=0.184 Sum_probs=99.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|+++..|+++|+.|+|+|+|..||..++-..... ....+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~--------------------------~~~~~--- 194 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEA--------------------------LAALP--- 194 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc--------------------------ccccc---
Confidence 4679999999999999999999999999999999998776321100 00000
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeecc-CC-hhhHHHHHHHHHHhccCCcEEEEecCCcchhhh--c-
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFI-DT-AHNIVEYIEIISRILKDGGVWINLGPLLYHFAD--L- 343 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFI-Dt-a~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d--~- 343 (397)
...++.+..+|+.++ .++||+|+++..+ .- ...+...++.+.+ |++||++|.+.|-.+.+.- .
T Consensus 195 -----~~~~~~f~~~Dl~~l------~~~fD~Vv~~~vL~H~p~~~~~~ll~~l~~-l~~g~liIs~~p~~~~~~~l~~~ 262 (315)
T PLN02585 195 -----PEVLPKFEANDLESL------SGKYDTVTCLDVLIHYPQDKADGMIAHLAS-LAEKRLIISFAPKTLYYDILKRI 262 (315)
T ss_pred -----cccceEEEEcchhhc------CCCcCEEEEcCEEEecCHHHHHHHHHHHHh-hcCCEEEEEeCCcchHHHHHHHH
Confidence 001256777886543 3789999876432 21 1234456666664 5789999998776443321 1
Q ss_pred ---cCCCCC--ccccCCHHHHHHHHHhCCCEEEEEeecCCC
Q 015966 344 ---YGQEDE--MSIELSLEDVKRVALHYGFEFEKEKTIETT 379 (397)
Q Consensus 344 ---~g~~~~--~~ieLS~EEl~~ll~~~GFeii~e~~i~~~ 379 (397)
+.++.. ..+..+.+|+++++++.||+++..+.+.+.
T Consensus 263 g~~~~g~~~~~r~y~~s~eel~~lL~~AGf~v~~~~~~~~~ 303 (315)
T PLN02585 263 GELFPGPSKATRAYLHAEADVERALKKAGWKVARREMTATQ 303 (315)
T ss_pred HhhcCCCCcCceeeeCCHHHHHHHHHHCCCEEEEEEEeecc
Confidence 111111 123458999999999999999886654443
|
|
| >PTZ00098 phosphoethanolamine N-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.5e-13 Score=127.34 Aligned_cols=142 Identities=12% Similarity=0.119 Sum_probs=97.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|.++..||+. |..|+|+|+|..|+..|+-... .
T Consensus 52 ~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~---~------------------------------- 97 (263)
T PTZ00098 52 ENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNS---D------------------------------- 97 (263)
T ss_pred CCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcC---c-------------------------------
Confidence 6679999999999999999875 7899999999999976652110 0
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-ccC-ChhhHHHHHHHHHHhccCCcEEEEecCCcch---hhh
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FID-TAHNIVEYIEIISRILKDGGVWINLGPLLYH---FAD 342 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-FID-ta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh---~~d 342 (397)
..++.+..+|+.+.. ..+++||+|++.. ++. ...+...+|+.++++|||||+++-..+..-. +..
T Consensus 98 -------~~~i~~~~~D~~~~~---~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~~~~~~~~ 167 (263)
T PTZ00098 98 -------KNKIEFEANDILKKD---FPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCADKIENWDE 167 (263)
T ss_pred -------CCceEEEECCcccCC---CCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccccccCcHH
Confidence 012677888887642 2357899999853 222 2346889999999999999999954321100 000
Q ss_pred ccC--CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 343 LYG--QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 343 ~~g--~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
... ......-.++.+++.++++++||+.+...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~ 201 (263)
T PTZ00098 168 EFKAYIKKRKYTLIPIQEYGDLIKSCNFQNVVAK 201 (263)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHCCCCeeeEE
Confidence 000 00000113689999999999999988754
|
|
| >TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.9e-12 Score=119.47 Aligned_cols=159 Identities=16% Similarity=0.264 Sum_probs=107.9
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
..++++|.+. ..+..+|||+|||+|.++..|++.|..|+|+|+|..|+..++-.+...
T Consensus 43 ~~~~~~l~~~-----~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~----------------- 100 (219)
T TIGR02021 43 RKLLDWLPKD-----PLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGR----------------- 100 (219)
T ss_pred HHHHHHHhcC-----CCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc-----------------
Confidence 3466666541 125679999999999999999999999999999999998776222100
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeecc--CChhhHHHHHHHHHHhccCCcE
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFI--DTAHNIVEYIEIISRILKDGGV 329 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFI--Dta~Ni~~yi~~I~~~LKPGG~ 329 (397)
....++.+..+|+.++ .++||+|+.++.+ .+..++...++.+++++|+|++
T Consensus 101 ---------------------~~~~~i~~~~~d~~~~------~~~fD~ii~~~~l~~~~~~~~~~~l~~i~~~~~~~~~ 153 (219)
T TIGR02021 101 ---------------------DVAGNVEFEVNDLLSL------CGEFDIVVCMDVLIHYPASDMAKALGHLASLTKERVI 153 (219)
T ss_pred ---------------------CCCCceEEEECChhhC------CCCcCEEEEhhHHHhCCHHHHHHHHHHHHHHhCCCEE
Confidence 0011367788887653 2689999886533 2345688899999999997766
Q ss_pred EEEecCCcchh------hhccCC--CCCccccCCHHHHHHHHHhCCCEEEEEeecCCCC
Q 015966 330 WINLGPLLYHF------ADLYGQ--EDEMSIELSLEDVKRVALHYGFEFEKEKTIETTY 380 (397)
Q Consensus 330 wIN~GPLlYh~------~d~~g~--~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~~~Y 380 (397)
+. +.|-.+.+ ...... .......++.++++.+++++||++++.+....+|
T Consensus 154 i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~v~~~~~~~~~~ 211 (219)
T TIGR02021 154 FT-FAPKTAWLAFLKMIGELFPGSSRATSAYLHPMTDLERALGELGWKIVREGLVSTGF 211 (219)
T ss_pred EE-ECCCchHHHHHHHHHhhCcCcccccceEEecHHHHHHHHHHcCceeeeeecccccc
Confidence 55 44422111 010111 1111234799999999999999999887555554
|
This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM. |
| >PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.7e-12 Score=125.59 Aligned_cols=155 Identities=22% Similarity=0.245 Sum_probs=97.8
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
.++.+.+.+. ..++.+|||+|||-|.++..+|++ |..|+|+.+|......++- ...+.
T Consensus 50 k~~~~~~~~~---l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~---~~~~~--------------- 108 (273)
T PF02353_consen 50 KLDLLCEKLG---LKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARE---RIREA--------------- 108 (273)
T ss_dssp HHHHHHTTTT-----TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHH---HHHCS---------------
T ss_pred HHHHHHHHhC---CCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHH---HHHhc---------------
Confidence 5566655543 237889999999999999999999 9999999999999876652 22111
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCCh--hhHHHHHHHHHHhccCCcEE
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVW 330 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta--~Ni~~yi~~I~~~LKPGG~w 330 (397)
.+.+.+.+..+|++++. .+||.||+.=-+... .|...||+.|+++|||||++
T Consensus 109 --------------------gl~~~v~v~~~D~~~~~------~~fD~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~ 162 (273)
T PF02353_consen 109 --------------------GLEDRVEVRLQDYRDLP------GKFDRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRL 162 (273)
T ss_dssp --------------------TSSSTEEEEES-GGG---------S-SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEE
T ss_pred --------------------CCCCceEEEEeeccccC------CCCCEEEEEechhhcChhHHHHHHHHHHHhcCCCcEE
Confidence 11234778889988752 489999998544433 78999999999999999999
Q ss_pred EE--ec-C-CcchhhhccC-------CCCCccccCCHHHHHHHHHhCCCEEEEEeec
Q 015966 331 IN--LG-P-LLYHFADLYG-------QEDEMSIELSLEDVKRVALHYGFEFEKEKTI 376 (397)
Q Consensus 331 IN--~G-P-LlYh~~d~~g-------~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i 376 (397)
+. ++ + -.++...... ..| .+.-.|.+++...+++.||++......
T Consensus 163 ~lq~i~~~~~~~~~~~~~~~~~i~kyiFP-gg~lps~~~~~~~~~~~~l~v~~~~~~ 218 (273)
T PF02353_consen 163 VLQTITHRDPPYHAERRSSSDFIRKYIFP-GGYLPSLSEILRAAEDAGLEVEDVENL 218 (273)
T ss_dssp EEEEEEE--HHHHHCTTCCCHHHHHHTST-TS---BHHHHHHHHHHTT-EEEEEEE-
T ss_pred EEEecccccccchhhcCCCceEEEEeeCC-CCCCCCHHHHHHHHhcCCEEEEEEEEc
Confidence 83 11 1 1122110000 011 123458999999999999999886543
|
All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: |
| >PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A | Back alignment and domain information |
|---|
Probab=99.43 E-value=9.5e-13 Score=115.95 Aligned_cols=103 Identities=21% Similarity=0.309 Sum_probs=81.6
Q ss_pred CCCeEEEecCCCChhHHHHHH-c--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISH-L--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~-~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|+++..|++ . +.+++|+|+|..|+..|+..+... .
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~----------------------------~-- 52 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKEL----------------------------G-- 52 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHT----------------------------T--
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhcccccc----------------------------c--
Confidence 578999999999999999994 4 679999999999998877433211 0
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
. .++.+.++|+.++... . .+.||+|++...+....+....++.+.++||+||++|-
T Consensus 53 --------~-~ni~~~~~d~~~l~~~-~-~~~~D~I~~~~~l~~~~~~~~~l~~~~~~lk~~G~~i~ 108 (152)
T PF13847_consen 53 --------L-DNIEFIQGDIEDLPQE-L-EEKFDIIISNGVLHHFPDPEKVLKNIIRLLKPGGILII 108 (152)
T ss_dssp --------S-TTEEEEESBTTCGCGC-S-STTEEEEEEESTGGGTSHHHHHHHHHHHHEEEEEEEEE
T ss_pred --------c-cccceEEeehhccccc-c-CCCeeEEEEcCchhhccCHHHHHHHHHHHcCCCcEEEE
Confidence 0 1378999999985321 1 17999999987777777788999999999999999994
|
... |
| >PLN02490 MPBQ/MSBQ methyltransferase | Back alignment and domain information |
|---|
Probab=99.42 E-value=3.3e-12 Score=128.71 Aligned_cols=141 Identities=20% Similarity=0.094 Sum_probs=100.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++..+++. +..|+|+|.|..|+..++-.. .
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~-----------------------------~----- 158 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKE-----------------------------P----- 158 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhh-----------------------------h-----
Confidence 4679999999999999999875 578999999999997665110 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchh--hhcc
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHF--ADLY 344 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~--~d~~ 344 (397)
..++.++.+|+.++- ...+.||+|+++..+....+....|++++++|||||.++-++|..-.+ ....
T Consensus 159 --------~~~i~~i~gD~e~lp---~~~~sFDvVIs~~~L~~~~d~~~~L~e~~rvLkPGG~LvIi~~~~p~~~~~r~~ 227 (340)
T PLN02490 159 --------LKECKIIEGDAEDLP---FPTDYADRYVSAGSIEYWPDPQRGIKEAYRVLKIGGKACLIGPVHPTFWLSRFF 227 (340)
T ss_pred --------ccCCeEEeccHHhCC---CCCCceeEEEEcChhhhCCCHHHHHHHHHHhcCCCcEEEEEEecCcchhHHHHh
Confidence 012566888887642 235789999988766655667789999999999999998666542111 1000
Q ss_pred CCCCCccccCCHHHHHHHHHhCCCEEEEEeec
Q 015966 345 GQEDEMSIELSLEDVKRVALHYGFEFEKEKTI 376 (397)
Q Consensus 345 g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i 376 (397)
. +......+.+|+.++++++||+.++.+.+
T Consensus 228 ~--~~~~~~~t~eEl~~lL~~aGF~~V~i~~i 257 (340)
T PLN02490 228 A--DVWMLFPKEEEYIEWFTKAGFKDVKLKRI 257 (340)
T ss_pred h--hhhccCCCHHHHHHHHHHCCCeEEEEEEc
Confidence 0 00011358999999999999998875543
|
|
| >PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-11 Score=114.54 Aligned_cols=146 Identities=21% Similarity=0.253 Sum_probs=101.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|.++..+++++ ..++|+|+|..|+..++-.....
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~------------------------------- 99 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDL------------------------------- 99 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhccc-------------------------------
Confidence 45799999999999999999987 78999999999987665211000
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEec---CCcch---
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLG---PLLYH--- 339 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~G---PLlYh--- 339 (397)
....++.+..+|+.+.. ...+.||+|+..+.+....++...++.+.++|||||++|-+. |....
T Consensus 100 -------~~~~~~~~~~~d~~~~~---~~~~~~D~I~~~~~l~~~~~~~~~l~~~~~~L~~gG~li~~~~~~~~~~~~~~ 169 (239)
T PRK00216 100 -------GLSGNVEFVQGDAEALP---FPDNSFDAVTIAFGLRNVPDIDKALREMYRVLKPGGRLVILEFSKPTNPPLKK 169 (239)
T ss_pred -------ccccCeEEEecccccCC---CCCCCccEEEEecccccCCCHHHHHHHHHHhccCCcEEEEEEecCCCchHHHH
Confidence 00123677888887642 235789999988777777778899999999999999998532 11100
Q ss_pred ----h--------hhccCCCCC--------ccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 340 ----F--------ADLYGQEDE--------MSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 340 ----~--------~d~~g~~~~--------~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
+ ....+.... ..-.++.+++..+++++||++++...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 225 (239)
T PRK00216 170 AYDFYLFKVLPLIGKLISKNAEAYSYLAESIRAFPDQEELAAMLEEAGFERVRYRN 225 (239)
T ss_pred HHHHHHHhhhHHHHHHHcCCcHHHHHHHHHHHhCCCHHHHHHHHHhCCCceeeeee
Confidence 0 000000000 01135889999999999999988653
|
|
| >PRK05785 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.3e-12 Score=121.16 Aligned_cols=106 Identities=19% Similarity=0.318 Sum_probs=81.6
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
+++.+....+ ++.+|||+|||||.++..|+++ |..|+|+|+|..||..|+- +
T Consensus 41 ~~~~l~~~~~-----~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~-------~--------------- 93 (226)
T PRK05785 41 LVKTILKYCG-----RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLV-------A--------------- 93 (226)
T ss_pred HHHHHHHhcC-----CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHh-------c---------------
Confidence 5555555433 3569999999999999999999 6899999999999976540 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
...+.+|+.++ |..+++||+|++.|-|....|+...+++++++|||++.++-
T Consensus 94 -------------------------~~~~~~d~~~l---p~~d~sfD~v~~~~~l~~~~d~~~~l~e~~RvLkp~~~ile 145 (226)
T PRK05785 94 -------------------------DDKVVGSFEAL---PFRDKSFDVVMSSFALHASDNIEKVIAEFTRVSRKQVGFIA 145 (226)
T ss_pred -------------------------cceEEechhhC---CCCCCCEEEEEecChhhccCCHHHHHHHHHHHhcCceEEEE
Confidence 01245677664 23468999999998888778899999999999999655664
Q ss_pred ec
Q 015966 333 LG 334 (397)
Q Consensus 333 ~G 334 (397)
++
T Consensus 146 ~~ 147 (226)
T PRK05785 146 MG 147 (226)
T ss_pred eC
Confidence 43
|
|
| >TIGR03438 probable methyltransferase | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.6e-12 Score=123.26 Aligned_cols=140 Identities=15% Similarity=0.114 Sum_probs=86.2
Q ss_pred HHHHHHHHHHh--cccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCH
Q 015966 147 KVRCIIRNIVR--DWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSY 221 (397)
Q Consensus 147 kv~stL~q~~R--DWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~ 221 (397)
+=.....++++ +|-. -+.|.+ .+....+.|.+.++ ++.+||++|||+|+.+..|++. |+.|+|+|+|.
T Consensus 26 ~G~~lf~~i~~~peYy~-tr~E~~-il~~~~~~ia~~~~-----~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~ 98 (301)
T TIGR03438 26 RGSELFEQICELPEYYP-TRTEAA-ILERHADEIAAATG-----AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISA 98 (301)
T ss_pred hHHHHHHHHHCCCcccc-HHHHHH-HHHHHHHHHHHhhC-----CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCH
Confidence 33445666666 4442 233332 22333344444443 4568999999999999999888 69999999999
Q ss_pred HHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCC-CCccE
Q 015966 222 YMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQV-GAWDA 300 (397)
Q Consensus 222 ~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~-~~fD~ 300 (397)
.||..++--+. . .+|.+ .+..++|||.+....+... ....+
T Consensus 99 ~mL~~a~~~l~---~--------------------------~~p~~---------~v~~i~gD~~~~~~~~~~~~~~~~~ 140 (301)
T TIGR03438 99 DALKESAAALA---A--------------------------DYPQL---------EVHGICADFTQPLALPPEPAAGRRL 140 (301)
T ss_pred HHHHHHHHHHH---h--------------------------hCCCc---------eEEEEEEcccchhhhhcccccCCeE
Confidence 99987652211 0 01111 2567889998743221110 11222
Q ss_pred EEE---eeccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 301 VVT---CFFIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 301 VvT---~FFIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
|+. .+..-...+....|+.|+++|||||++|
T Consensus 141 ~~~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~l 174 (301)
T TIGR03438 141 GFFPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLL 174 (301)
T ss_pred EEEecccccCCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 322 1232345668899999999999999998
|
This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases |
| >COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-12 Score=124.93 Aligned_cols=190 Identities=16% Similarity=0.145 Sum_probs=119.5
Q ss_pred CCCCchhhHHHHHHHHHHhcccccChhHHhhch-HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEE
Q 015966 139 NVPLADVDKVRCIIRNIVRDWAAEGKTERDQCY-KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGN 217 (397)
Q Consensus 139 ~~~~~d~dkv~stL~q~~RDWS~eG~~ER~~~y-~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~Gn 217 (397)
.++..+++|-. .|++...|+ +|+-..--.. +--++++.+.........+.+|||.|||-|-|+.-+|++|+.|+|+
T Consensus 11 ~id~~e~~~F~-~la~~wwd~--~g~f~~LH~~N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~Ga~Vtgi 87 (243)
T COG2227 11 NVDYKELDKFE-ALASRWWDP--EGEFKPLHKINPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARLGASVTGI 87 (243)
T ss_pred cCCHHHHHHHH-HHHhhhcCC--CCceeeeeeeccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHCCCeeEEe
Confidence 34444444443 555555444 4433321111 1123444444432111378999999999999999999999999999
Q ss_pred eCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCC
Q 015966 218 EFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGA 297 (397)
Q Consensus 218 D~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~ 297 (397)
|+|..|+..|+ .++.+. ++. +.+.++...++.. ..++
T Consensus 88 D~se~~I~~Ak---~ha~e~-----------------------gv~--------------i~y~~~~~edl~~---~~~~ 124 (243)
T COG2227 88 DASEKPIEVAK---LHALES-----------------------GVN--------------IDYRQATVEDLAS---AGGQ 124 (243)
T ss_pred cCChHHHHHHH---Hhhhhc-----------------------ccc--------------ccchhhhHHHHHh---cCCC
Confidence 99999998877 122110 111 3355555555543 2389
Q ss_pred ccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe----cCCcchh---------hhccCCCCCccccCCHHHHHHHHH
Q 015966 298 WDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL----GPLLYHF---------ADLYGQEDEMSIELSLEDVKRVAL 364 (397)
Q Consensus 298 fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~----GPLlYh~---------~d~~g~~~~~~ieLS~EEl~~ll~ 364 (397)
||+|+|.=.|...+|...+++...++|||||+.+-- -+.-|-. ...+.+.-...--+-.+|+...+.
T Consensus 125 FDvV~cmEVlEHv~dp~~~~~~c~~lvkP~G~lf~STinrt~ka~~~~i~~ae~vl~~vP~gTH~~~k~irp~El~~~~~ 204 (243)
T COG2227 125 FDVVTCMEVLEHVPDPESFLRACAKLVKPGGILFLSTINRTLKAYLLAIIGAEYVLRIVPKGTHDYRKFIKPAELIRWLL 204 (243)
T ss_pred ccEEEEhhHHHccCCHHHHHHHHHHHcCCCcEEEEeccccCHHHHHHHHHHHHHHHHhcCCcchhHHHhcCHHHHHHhcc
Confidence 999999888888888889999999999999999831 1111111 000110000112357899999999
Q ss_pred hCCCEEEEEe
Q 015966 365 HYGFEFEKEK 374 (397)
Q Consensus 365 ~~GFeii~e~ 374 (397)
..||++....
T Consensus 205 ~~~~~~~~~~ 214 (243)
T COG2227 205 GANLKIIDRK 214 (243)
T ss_pred cCCceEEeec
Confidence 9899988753
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-11 Score=128.27 Aligned_cols=141 Identities=13% Similarity=0.045 Sum_probs=98.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|.++..||+. |..|+|+|+|..|+..|+.-. .
T Consensus 266 ~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~---~-------------------------------- 310 (475)
T PLN02336 266 PGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERA---I-------------------------------- 310 (475)
T ss_pred CCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHh---h--------------------------------
Confidence 5679999999999999999986 789999999999998765110 0
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCc------chhh
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLL------YHFA 341 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLl------Yh~~ 341 (397)
....++.+..+|+.+.. ...++||+|++..-+....+...+++.++++|||||.++-..+.. -.+.
T Consensus 311 -----~~~~~v~~~~~d~~~~~---~~~~~fD~I~s~~~l~h~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~ 382 (475)
T PLN02336 311 -----GRKCSVEFEVADCTKKT---YPDNSFDVIYSRDTILHIQDKPALFRSFFKWLKPGGKVLISDYCRSPGTPSPEFA 382 (475)
T ss_pred -----cCCCceEEEEcCcccCC---CCCCCEEEEEECCcccccCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCCcHHHH
Confidence 00113678888987642 224789999987544444567799999999999999998421110 0000
Q ss_pred hccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 342 DLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 342 d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
.... .. .....+.+++.++++++||+++..+
T Consensus 383 ~~~~-~~-g~~~~~~~~~~~~l~~aGF~~i~~~ 413 (475)
T PLN02336 383 EYIK-QR-GYDLHDVQAYGQMLKDAGFDDVIAE 413 (475)
T ss_pred HHHH-hc-CCCCCCHHHHHHHHHHCCCeeeeee
Confidence 0000 00 0124689999999999999998643
|
|
| >PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.37 E-value=6.1e-12 Score=120.92 Aligned_cols=141 Identities=16% Similarity=0.106 Sum_probs=99.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CC--eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL-GF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf--~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|.++..++++ |. .|+|+|+|..|+..|+...... . +
T Consensus 77 ~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~--------------------------g--~- 127 (272)
T PRK11873 77 PGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKA--------------------------G--Y- 127 (272)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHc--------------------------C--C-
Confidence 6779999999999999888775 54 6999999999998776322100 0 0
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecC-----Ccchh
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP-----LLYHF 340 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GP-----LlYh~ 340 (397)
.++.+..+|+.++- ..++.||+|++...+....+...+++.++++|||||+++-.+. +.-..
T Consensus 128 ----------~~v~~~~~d~~~l~---~~~~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~~~~~~~~~~ 194 (272)
T PRK11873 128 ----------TNVEFRLGEIEALP---VADNSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVVLRGELPEEI 194 (272)
T ss_pred ----------CCEEEEEcchhhCC---CCCCceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEeeccCCCCHHH
Confidence 12567888887642 2356899999887666666778999999999999999985322 11000
Q ss_pred hh---ccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 341 AD---LYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 341 ~d---~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
.. ..+.. ..-.++.+++.+++++.||..++.
T Consensus 195 ~~~~~~~~~~--~~~~~~~~e~~~~l~~aGf~~v~i 228 (272)
T PRK11873 195 RNDAELYAGC--VAGALQEEEYLAMLAEAGFVDITI 228 (272)
T ss_pred HHhHHHHhcc--ccCCCCHHHHHHHHHHCCCCceEE
Confidence 00 00000 012368899999999999998764
|
|
| >TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.35 E-value=4.3e-11 Score=110.88 Aligned_cols=146 Identities=14% Similarity=0.144 Sum_probs=101.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|.++..+++.|..++|+|+|..|+..++..+... .+
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~--------------------------~~------ 92 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKD--------------------------PL------ 92 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHc--------------------------CC------
Confidence 4679999999999999999999999999999999987665211100 00
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCC----cchhh---
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL----LYHFA--- 341 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPL----lYh~~--- 341 (397)
.++.+..+|+.++-. ...+.||+|++...+....+....++.+.++|+|||.++-..+. .+...
T Consensus 93 -------~~~~~~~~d~~~~~~--~~~~~~D~i~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~i~~~~~~~~~~~~~~~~ 163 (224)
T TIGR01983 93 -------LKIEYRCTSVEDLAE--KGAKSFDVVTCMEVLEHVPDPQAFIRACAQLLKPGGILFFSTINRTPKSYLLAIVG 163 (224)
T ss_pred -------CceEEEeCCHHHhhc--CCCCCccEEEehhHHHhCCCHHHHHHHHHHhcCCCcEEEEEecCCCchHHHHHHHh
Confidence 025667778766532 12478999998876666677889999999999999998742221 00000
Q ss_pred h--ccCC----CCCccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 342 D--LYGQ----EDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 342 d--~~g~----~~~~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
. ..+. .....-.++.+++.+++++.||++++...
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~G~~i~~~~~ 203 (224)
T TIGR01983 164 AEYILRIVPKGTHDWEKFIKPSELTSWLESAGLRVKDVKG 203 (224)
T ss_pred hhhhhhcCCCCcCChhhcCCHHHHHHHHHHcCCeeeeeee
Confidence 0 0000 00011235889999999999999988653
|
This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase. |
| >PRK07580 Mg-protoporphyrin IX methyl transferase; Validated | Back alignment and domain information |
|---|
Probab=99.34 E-value=6.4e-11 Score=110.01 Aligned_cols=142 Identities=15% Similarity=0.274 Sum_probs=95.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
+..+|||+|||+|.++..|+++|..|+|+|+|..|+..|+-.....
T Consensus 63 ~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~---------------------------------- 108 (230)
T PRK07580 63 TGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEA---------------------------------- 108 (230)
T ss_pred CCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc----------------------------------
Confidence 4679999999999999999999999999999999998776222100
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeecc-C-ChhhHHHHHHHHHHhccCCcEEEEecCC---cchhhhc
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFI-D-TAHNIVEYIEIISRILKDGGVWINLGPL---LYHFADL 343 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFI-D-ta~Ni~~yi~~I~~~LKPGG~wIN~GPL---lYh~~d~ 343 (397)
....++.+..+|+.. ..++||+|++...+ . ..+++...++.+.+.++ ||.+|.+.|- ...+...
T Consensus 109 ----~~~~~i~~~~~d~~~------~~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~-~~~~i~~~~~~~~~~~~~~l 177 (230)
T PRK07580 109 ----GLAGNITFEVGDLES------LLGRFDTVVCLDVLIHYPQEDAARMLAHLASLTR-GSLIFTFAPYTPLLALLHWI 177 (230)
T ss_pred ----CCccCcEEEEcCchh------ccCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcC-CeEEEEECCccHHHHHHHHh
Confidence 001236778888432 14789999987543 2 34567788888888775 4555654332 1111000
Q ss_pred ---c-C-CCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 344 ---Y-G-QEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 344 ---~-g-~~~~~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
. + ........++.+++..++++.||++.+.+.
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 214 (230)
T PRK07580 178 GGLFPGPSRTTRIYPHREKGIRRALAAAGFKVVRTER 214 (230)
T ss_pred ccccCCccCCCCccccCHHHHHHHHHHCCCceEeeee
Confidence 0 0 011113457999999999999999988654
|
|
| >TIGR02072 BioC biotin biosynthesis protein BioC | Back alignment and domain information |
|---|
Probab=99.34 E-value=7.9e-12 Score=115.26 Aligned_cols=137 Identities=19% Similarity=0.172 Sum_probs=95.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
.+.+|||+|||+|.++..|++.|. .++|+|+|..|+..++-.+ +
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~---------------------------------~- 79 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKL---------------------------------S- 79 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhc---------------------------------C-
Confidence 457899999999999999999975 4699999999986554100 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCC
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~ 346 (397)
.++.++.+|+.+.- ...++||+|++.+.+.-..+...+++.+.++|||||+++-..|..-.+......
T Consensus 80 ---------~~~~~~~~d~~~~~---~~~~~fD~vi~~~~l~~~~~~~~~l~~~~~~L~~~G~l~~~~~~~~~~~~~~~~ 147 (240)
T TIGR02072 80 ---------ENVQFICGDAEKLP---LEDSSFDLIVSNLALQWCDDLSQALSELARVLKPGGLLAFSTFGPGTLHELRQS 147 (240)
T ss_pred ---------CCCeEEecchhhCC---CCCCceeEEEEhhhhhhccCHHHHHHHHHHHcCCCcEEEEEeCCccCHHHHHHH
Confidence 12566778877642 235789999998776666678899999999999999999644332221110000
Q ss_pred -CCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 347 -EDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 347 -~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
.....-..+.+++.+++.+. |+...
T Consensus 148 ~~~~~~~~~~~~~~~~~l~~~-f~~~~ 173 (240)
T TIGR02072 148 FGQHGLRYLSLDELKALLKNS-FELLT 173 (240)
T ss_pred HHHhccCCCCHHHHHHHHHHh-cCCcE
Confidence 00001235889999999887 87665
|
This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology. |
| >PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=8.1e-11 Score=110.23 Aligned_cols=156 Identities=13% Similarity=0.100 Sum_probs=105.5
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~ 253 (397)
-++++...... .++.+||++|||+|.++..+++.|..|+|+|+|..|+..++......
T Consensus 36 ~~~~l~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~------------------- 93 (233)
T PRK05134 36 RLNYIREHAGG---LFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALES------------------- 93 (233)
T ss_pred HHHHHHHhccC---CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHc-------------------
Confidence 35566655532 25679999999999999999999999999999999987665211100
Q ss_pred CcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe
Q 015966 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 333 (397)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~ 333 (397)
. ..+.+..+|+.++.. ...+.||+|++.+.+....+....++.+.++|+|||+++-.
T Consensus 94 -------~--------------~~~~~~~~~~~~~~~--~~~~~fD~Ii~~~~l~~~~~~~~~l~~~~~~L~~gG~l~v~ 150 (233)
T PRK05134 94 -------G--------------LKIDYRQTTAEELAA--EHPGQFDVVTCMEMLEHVPDPASFVRACAKLVKPGGLVFFS 150 (233)
T ss_pred -------C--------------CceEEEecCHHHhhh--hcCCCccEEEEhhHhhccCCHHHHHHHHHHHcCCCcEEEEE
Confidence 0 013455666655421 12478999998877776677889999999999999998842
Q ss_pred cCC--cchh-----------hhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 334 GPL--LYHF-----------ADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 334 GPL--lYh~-----------~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
.+- ...+ ...........-.++.+++..++++.||+++...
T Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 204 (233)
T PRK05134 151 TLNRNLKSYLLAIVGAEYVLRMLPKGTHDYKKFIKPSELAAWLRQAGLEVQDIT 204 (233)
T ss_pred ecCCChHHHHHHHhhHHHHhhhcCcccCchhhcCCHHHHHHHHHHCCCeEeeee
Confidence 221 0000 0000000001224689999999999999998754
|
|
| >TIGR00537 hemK_rel_arch HemK-related putative methylase | Back alignment and domain information |
|---|
Probab=99.33 E-value=3.6e-11 Score=108.91 Aligned_cols=125 Identities=18% Similarity=0.215 Sum_probs=90.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+||++|||+|.++..++++|..|+|+|+|..|+..++..+.. + .
T Consensus 19 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~----~----------------------~------- 65 (179)
T TIGR00537 19 KPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKL----N----------------------N------- 65 (179)
T ss_pred CCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHH----c----------------------C-------
Confidence 456899999999999999999999999999999999876632210 0 0
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-cc--CC------------------hhhHHHHHHHHHHhccCC
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FI--DT------------------AHNIVEYIEIISRILKDG 327 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-FI--Dt------------------a~Ni~~yi~~I~~~LKPG 327 (397)
.++.+..+|+.+.. .++||+|+++- |+ +. ..-+.++++.+.++||||
T Consensus 66 -------~~~~~~~~d~~~~~-----~~~fD~Vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~g 133 (179)
T TIGR00537 66 -------VGLDVVMTDLFKGV-----RGKFDVILFNPPYLPLEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEG 133 (179)
T ss_pred -------CceEEEEccccccc-----CCcccEEEECCCCCCCcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCC
Confidence 01456778876642 25899999862 22 11 111467899999999999
Q ss_pred cEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 328 GVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 328 G~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
|.++-+.+ ..-...++..++++.||+.+...
T Consensus 134 G~~~~~~~----------------~~~~~~~~~~~l~~~gf~~~~~~ 164 (179)
T TIGR00537 134 GRVQLIQS----------------SLNGEPDTFDKLDERGFRYEIVA 164 (179)
T ss_pred CEEEEEEe----------------ccCChHHHHHHHHhCCCeEEEEE
Confidence 99884211 11236888999999999987743
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes. |
| >PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.8e-11 Score=123.54 Aligned_cols=137 Identities=18% Similarity=0.185 Sum_probs=94.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|.++..+|++ |..|+|+|+|..|+..++-... .+
T Consensus 167 ~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~----------------------------~l----- 213 (383)
T PRK11705 167 PGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA----------------------------GL----- 213 (383)
T ss_pred CCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc----------------------------cC-----
Confidence 5679999999999999999986 8899999999999987652110 00
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCC--hhhHHHHHHHHHHhccCCcEEEE--ecCC-cchhhh
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNIVEYIEIISRILKDGGVWIN--LGPL-LYHFAD 342 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDt--a~Ni~~yi~~I~~~LKPGG~wIN--~GPL-lYh~~d 342 (397)
.+.+..+|+.++ .++||+|++...+.. ..++..+++.++++|||||+++. ++.- .+...+
T Consensus 214 ---------~v~~~~~D~~~l------~~~fD~Ivs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~~~~~~~~ 278 (383)
T PRK11705 214 ---------PVEIRLQDYRDL------NGQFDRIVSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSNKTDTNVD 278 (383)
T ss_pred ---------eEEEEECchhhc------CCCCCEEEEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCCCCCCCCC
Confidence 145566776654 368999998754432 35678999999999999999985 2211 110000
Q ss_pred cc-C--CCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 343 LY-G--QEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 343 ~~-g--~~~~~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
.+ . ..| ...-.+.+++..+++. ||++.....
T Consensus 279 ~~i~~yifp-~g~lps~~~i~~~~~~-~~~v~d~~~ 312 (383)
T PRK11705 279 PWINKYIFP-NGCLPSVRQIAQASEG-LFVMEDWHN 312 (383)
T ss_pred CCceeeecC-CCcCCCHHHHHHHHHC-CcEEEEEec
Confidence 00 0 011 1234588999998775 899887543
|
|
| >PRK11088 rrmA 23S rRNA methyltransferase A; Provisional | Back alignment and domain information |
|---|
Probab=99.31 E-value=1e-11 Score=120.06 Aligned_cols=97 Identities=21% Similarity=0.267 Sum_probs=72.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc-----CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccc
Q 015966 189 SPPACLVPGAGLGRLALEISHL-----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVS 263 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-----Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~ 263 (397)
+..+|||+|||+|.++..|++. |..|+|+|+|..|+..|+-.
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~--------------------------------- 131 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKR--------------------------------- 131 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHh---------------------------------
Confidence 4568999999999999999875 34789999999999765410
Q ss_pred cCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcch
Q 015966 264 IPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYH 339 (397)
Q Consensus 264 iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh 339 (397)
.| ++.+..+|..++ |..+++||+|++.|.- ..+++++++|||||++|.+.|.-.|
T Consensus 132 ~~-----------~~~~~~~d~~~l---p~~~~sfD~I~~~~~~-------~~~~e~~rvLkpgG~li~~~p~~~~ 186 (272)
T PRK11088 132 YP-----------QVTFCVASSHRL---PFADQSLDAIIRIYAP-------CKAEELARVVKPGGIVITVTPGPRH 186 (272)
T ss_pred CC-----------CCeEEEeecccC---CCcCCceeEEEEecCC-------CCHHHHHhhccCCCEEEEEeCCCcc
Confidence 00 156677887664 2346799999986531 2357899999999999987665433
|
|
| >PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.30 E-value=6.7e-13 Score=108.33 Aligned_cols=97 Identities=23% Similarity=0.213 Sum_probs=56.3
Q ss_pred EEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCC
Q 015966 194 LVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPAS 271 (397)
Q Consensus 194 LvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~ 271 (397)
||+|||+|+++..|+.. +.+++|+|+|..|+..++.-+... ....
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~-------------------------~~~~-------- 47 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAEL-------------------------GNDN-------- 47 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHC-------------------------T-----------
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhc-------------------------CCcc--------
Confidence 79999999999999999 889999999999984332111000 0000
Q ss_pred CCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEE
Q 015966 272 AGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVW 330 (397)
Q Consensus 272 ~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~w 330 (397)
...+.+...|..+.. ..++||+|++...+...+++.++++.++++|||||++
T Consensus 48 ---~~~~~~~~~~~~~~~----~~~~fD~V~~~~vl~~l~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 48 ---FERLRFDVLDLFDYD----PPESFDLVVASNVLHHLEDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp ---EEEEE--SSS---CC----C----SEEEEE-TTS--S-HHHHHHHHTTT-TSS-EE
T ss_pred ---eeEEEeecCChhhcc----cccccceehhhhhHhhhhhHHHHHHHHHHHcCCCCCC
Confidence 001222223322211 1269999999987777788999999999999999985
|
The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A. |
| >TIGR00138 gidB 16S rRNA methyltransferase GidB | Back alignment and domain information |
|---|
Probab=99.29 E-value=5.7e-11 Score=109.31 Aligned_cols=126 Identities=12% Similarity=0.148 Sum_probs=88.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++..+|..+ ..|+|+|.|..|+..++...+.. .
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~----------------------------~--- 90 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAEL----------------------------G--- 90 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHh----------------------------C---
Confidence 36799999999999999999775 57999999999997665322100 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCC
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~ 346 (397)
. .++.++.+|+.++ . ..++||+|++.. ..++.++++.++++|||||+++- ++-
T Consensus 91 -------~-~~i~~i~~d~~~~-~---~~~~fD~I~s~~----~~~~~~~~~~~~~~LkpgG~lvi-----~~~------ 143 (181)
T TIGR00138 91 -------L-NNVEIVNGRAEDF-Q---HEEQFDVITSRA----LASLNVLLELTLNLLKVGGYFLA-----YKG------ 143 (181)
T ss_pred -------C-CCeEEEecchhhc-c---ccCCccEEEehh----hhCHHHHHHHHHHhcCCCCEEEE-----EcC------
Confidence 0 1267899998775 2 247899998755 24567889999999999999993 221
Q ss_pred CCCccccCCHHHHHHHHH---hCCCEEEEEeecCC
Q 015966 347 EDEMSIELSLEDVKRVAL---HYGFEFEKEKTIET 378 (397)
Q Consensus 347 ~~~~~ieLS~EEl~~ll~---~~GFeii~e~~i~~ 378 (397)
.-...++..+.+ ..||+.++...+..
T Consensus 144 ------~~~~~~~~~~~e~~~~~~~~~~~~~~~~~ 172 (181)
T TIGR00138 144 ------KKYLDEIEEAKRKCQVLGVEPLEVPPLTG 172 (181)
T ss_pred ------CCcHHHHHHHHHhhhhcCceEeeccccCC
Confidence 112344444444 48999988654433
|
GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA. |
| >PRK08317 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=8.3e-11 Score=108.06 Aligned_cols=140 Identities=17% Similarity=0.125 Sum_probs=97.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|.++..+|++. -.|+|+|+|..|+..++-....
T Consensus 19 ~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~-------------------------------- 66 (241)
T PRK08317 19 PGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAG-------------------------------- 66 (241)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhC--------------------------------
Confidence 56799999999999999999874 5899999999998766521000
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCC----cchhh
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL----LYHFA 341 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPL----lYh~~ 341 (397)
...++.+..+|+.++- ...++||+|++...+....+...+++.++++|||||.++-..|- .+...
T Consensus 67 --------~~~~~~~~~~d~~~~~---~~~~~~D~v~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~ 135 (241)
T PRK08317 67 --------LGPNVEFVRGDADGLP---FPDGSFDAVRSDRVLQHLEDPARALAEIARVLRPGGRVVVLDTDWDTLVWHSG 135 (241)
T ss_pred --------CCCceEEEecccccCC---CCCCCceEEEEechhhccCCHHHHHHHHHHHhcCCcEEEEEecCCCceeecCC
Confidence 0112667778876532 23578999999887777777889999999999999999864431 11100
Q ss_pred hc---------cCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 342 DL---------YGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 342 d~---------~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
+. +... ..-..+..++.+++++.||+.+..
T Consensus 136 ~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~aGf~~~~~ 174 (241)
T PRK08317 136 DRALMRKILNFWSDH--FADPWLGRRLPGLFREAGLTDIEV 174 (241)
T ss_pred ChHHHHHHHHHHHhc--CCCCcHHHHHHHHHHHcCCCceeE
Confidence 00 0000 001234578999999999987763
|
|
| >COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=99.28 E-value=5.7e-11 Score=116.96 Aligned_cols=155 Identities=18% Similarity=0.253 Sum_probs=108.2
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
.++.+.+.+.. .++.+|||+|||-|.++..+|++ |..|+|+++|..|+..++-.. ..
T Consensus 60 k~~~~~~kl~L---~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~---~~---------------- 117 (283)
T COG2230 60 KLDLILEKLGL---KPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRI---AA---------------- 117 (283)
T ss_pred HHHHHHHhcCC---CCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHH---HH----------------
Confidence 56666665543 37899999999999999999999 999999999999997665211 10
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCCcEE
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVW 330 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPGG~w 330 (397)
.....++.+...|..++- +.||.||+.=-+. ..+|..+||+.++++|+|||++
T Consensus 118 -------------------~gl~~~v~v~l~d~rd~~------e~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~ 172 (283)
T COG2230 118 -------------------RGLEDNVEVRLQDYRDFE------EPFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRM 172 (283)
T ss_pred -------------------cCCCcccEEEeccccccc------cccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceE
Confidence 011234677778877763 5599999972111 3367899999999999999999
Q ss_pred EE--e-cCCc-c-hhh---hccCCCCCccccCCHHHHHHHHHhCCCEEEEEeecC
Q 015966 331 IN--L-GPLL-Y-HFA---DLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIE 377 (397)
Q Consensus 331 IN--~-GPLl-Y-h~~---d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~ 377 (397)
++ + +|=. + .+. ..+ ..| ...-.|..++.+...+.||.+...+...
T Consensus 173 llh~I~~~~~~~~~~~~~i~~y-iFP-gG~lPs~~~i~~~~~~~~~~v~~~~~~~ 225 (283)
T COG2230 173 LLHSITGPDQEFRRFPDFIDKY-IFP-GGELPSISEILELASEAGFVVLDVESLR 225 (283)
T ss_pred EEEEecCCCcccccchHHHHHh-CCC-CCcCCCHHHHHHHHHhcCcEEehHhhhc
Confidence 96 2 2210 0 110 000 011 1334589999999999999999865433
|
|
| >PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.4e-11 Score=112.69 Aligned_cols=128 Identities=23% Similarity=0.243 Sum_probs=89.8
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
.++.|.+... ++.+|||+|||+|.++..+++.|.. |+|+|+|..|+..|+-.+.. +
T Consensus 109 ~l~~l~~~~~-----~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~----~-------------- 165 (250)
T PRK00517 109 CLEALEKLVL-----PGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAEL----N-------------- 165 (250)
T ss_pred HHHHHHhhcC-----CCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH----c--------------
Confidence 4555554432 5679999999999999999999986 99999999999876622110 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
.+. ..+.+..+ +.+||+|+++.. +..+..+++.+.++|||||++|-
T Consensus 166 --------~~~------------~~~~~~~~-----------~~~fD~Vvani~---~~~~~~l~~~~~~~LkpgG~lil 211 (250)
T PRK00517 166 --------GVE------------LNVYLPQG-----------DLKADVIVANIL---ANPLLELAPDLARLLKPGGRLIL 211 (250)
T ss_pred --------CCC------------ceEEEccC-----------CCCcCEEEEcCc---HHHHHHHHHHHHHhcCCCcEEEE
Confidence 000 00111111 126999987643 34467889999999999999996
Q ss_pred ecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 333 LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 333 ~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
.|.+ .-..+++.+.+++.||+++...
T Consensus 212 sgi~----------------~~~~~~v~~~l~~~Gf~~~~~~ 237 (250)
T PRK00517 212 SGIL----------------EEQADEVLEAYEEAGFTLDEVL 237 (250)
T ss_pred EECc----------------HhhHHHHHHHHHHCCCEEEEEE
Confidence 4432 2246789999999999988743
|
|
| >KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.28 E-value=3e-11 Score=117.39 Aligned_cols=189 Identities=20% Similarity=0.232 Sum_probs=116.9
Q ss_pred chhhHHHHHHHHHHh-cccccChhHHhh-----chHHHHHHHHhhCCCCCC----CCCCeEEEecCCCChhHHHHHHcCC
Q 015966 143 ADVDKVRCIIRNIVR-DWAAEGKTERDQ-----CYKPILEELDALFPNRSK----ESPPACLVPGAGLGRLALEISHLGF 212 (397)
Q Consensus 143 ~d~dkv~stL~q~~R-DWS~eG~~ER~~-----~y~pIl~~L~~~~p~~~~----~~~~rVLvPGCGlGRLa~eLA~~Gf 212 (397)
.|.+.|+ .++-++- .|..+|-.+--- -.+-|.+-+.+++++... --+.+|||.|||+|-|+.-||+.|+
T Consensus 34 i~~~eV~-~f~~la~~wwd~~g~~~~Lh~mn~~Rl~fi~d~~~~~v~~~~p~~k~~~g~~ilDvGCGgGLLSepLArlga 112 (282)
T KOG1270|consen 34 IDVDEVK-KFQALAFTWWDEEGVRHPLHSMNQTRLPFIRDDLRNRVNNHAPGSKPLLGMKILDVGCGGGLLSEPLARLGA 112 (282)
T ss_pred ccHHHHH-HHHHhcccccccccchhhhhhccchhhhHHHHHHHhcccccCCCccccCCceEEEeccCccccchhhHhhCC
Confidence 3345566 4444444 556666533211 112334444444433210 1246899999999999999999999
Q ss_pred eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCC
Q 015966 213 ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDP 292 (397)
Q Consensus 213 ~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~ 292 (397)
+|+|+|.|..|+.+|+-- .+.. ++. +......+++...|..++
T Consensus 113 ~V~GID~s~~~V~vA~~h--~~~d------------------------P~~-------~~~~~y~l~~~~~~~E~~---- 155 (282)
T KOG1270|consen 113 QVTGIDASDDMVEVANEH--KKMD------------------------PVL-------EGAIAYRLEYEDTDVEGL---- 155 (282)
T ss_pred eeEeecccHHHHHHHHHh--hhcC------------------------chh-------ccccceeeehhhcchhhc----
Confidence 999999999999998821 1100 100 001112355666664443
Q ss_pred CCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEE----E------ecCCcchhhhccCCCCC--c--cccCCHHH
Q 015966 293 SQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI----N------LGPLLYHFADLYGQEDE--M--SIELSLED 358 (397)
Q Consensus 293 ~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wI----N------~GPLlYh~~d~~g~~~~--~--~ieLS~EE 358 (397)
.+.||+||+.--+....|+.++++...++|||||.+. | +|.+++ .+.....-|. . .-.++++|
T Consensus 156 --~~~fDaVvcsevleHV~dp~~~l~~l~~~lkP~G~lfittinrt~lS~~~~i~~-~E~vl~ivp~Gth~~ekfi~p~e 232 (282)
T KOG1270|consen 156 --TGKFDAVVCSEVLEHVKDPQEFLNCLSALLKPNGRLFITTINRTILSFAGTIFL-AEIVLRIVPKGTHTWEKFINPEE 232 (282)
T ss_pred --ccccceeeeHHHHHHHhCHHHHHHHHHHHhCCCCceEeeehhhhHHHhhccccH-HHHHHHhcCCCCcCHHHcCCHHH
Confidence 3569999998777767778899999999999999876 2 222222 1111000010 0 12479999
Q ss_pred HHHHHHhCCCEEEE
Q 015966 359 VKRVALHYGFEFEK 372 (397)
Q Consensus 359 l~~ll~~~GFeii~ 372 (397)
+.++++..|+.+..
T Consensus 233 ~~~~l~~~~~~v~~ 246 (282)
T KOG1270|consen 233 LTSILNANGAQVND 246 (282)
T ss_pred HHHHHHhcCcchhh
Confidence 99999999988765
|
|
| >TIGR00406 prmA ribosomal protein L11 methyltransferase | Back alignment and domain information |
|---|
Probab=99.28 E-value=8.6e-11 Score=115.17 Aligned_cols=132 Identities=22% Similarity=0.174 Sum_probs=92.4
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
.++.|.++.. ++.+|||+|||+|.++..++++|. .|+|+|+|..|+..++..... +.
T Consensus 149 ~l~~l~~~~~-----~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~----n~------------- 206 (288)
T TIGR00406 149 CLEWLEDLDL-----KDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAEL----NQ------------- 206 (288)
T ss_pred HHHHHHhhcC-----CCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH----cC-------------
Confidence 4455555432 457999999999999999999987 799999999999877632210 00
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
+ ...+....++.... ..++||+|+++.. +..+.++++.+.++|||||++|-
T Consensus 207 ---------~------------~~~~~~~~~~~~~~-----~~~~fDlVvan~~---~~~l~~ll~~~~~~LkpgG~li~ 257 (288)
T TIGR00406 207 ---------V------------SDRLQVKLIYLEQP-----IEGKADVIVANIL---AEVIKELYPQFSRLVKPGGWLIL 257 (288)
T ss_pred ---------C------------CcceEEEecccccc-----cCCCceEEEEecC---HHHHHHHHHHHHHHcCCCcEEEE
Confidence 0 01133444442221 2468999998764 34567899999999999999997
Q ss_pred ecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 333 LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 333 ~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
.|.+ .-..+++++.+++. |++++.
T Consensus 258 sgi~----------------~~~~~~v~~~~~~~-f~~~~~ 281 (288)
T TIGR00406 258 SGIL----------------ETQAQSVCDAYEQG-FTVVEI 281 (288)
T ss_pred EeCc----------------HhHHHHHHHHHHcc-CceeeE
Confidence 6643 12357888888775 988764
|
Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis. |
| >PRK06202 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=6e-11 Score=111.72 Aligned_cols=139 Identities=17% Similarity=0.225 Sum_probs=90.3
Q ss_pred CCCeEEEecCCCChhHHHHHH----cC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCcccc
Q 015966 189 SPPACLVPGAGLGRLALEISH----LG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPV 262 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~----~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v 262 (397)
++.+|||+|||+|.++..|++ .| ..|+|+|+|..|+..|+-.. ..
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~---~~-------------------------- 110 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANP---RR-------------------------- 110 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhcc---cc--------------------------
Confidence 567999999999999999885 35 48999999999998765110 00
Q ss_pred ccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhh--HHHHHHHHHHhccCCcEEEE-e--cCCc
Q 015966 263 SIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN--IVEYIEIISRILKDGGVWIN-L--GPLL 337 (397)
Q Consensus 263 ~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N--i~~yi~~I~~~LKPGG~wIN-~--GPLl 337 (397)
.++.+..++...+. ..+++||+|++++.+....+ +...++.++++|| |+++|+ + +++.
T Consensus 111 -------------~~~~~~~~~~~~l~---~~~~~fD~V~~~~~lhh~~d~~~~~~l~~~~r~~~-~~~~i~dl~~~~~~ 173 (232)
T PRK06202 111 -------------PGVTFRQAVSDELV---AEGERFDVVTSNHFLHHLDDAEVVRLLADSAALAR-RLVLHNDLIRSRLA 173 (232)
T ss_pred -------------CCCeEEEEeccccc---ccCCCccEEEECCeeecCChHHHHHHHHHHHHhcC-eeEEEeccccCHHH
Confidence 01233333332321 12478999999876543333 6689999999998 777776 1 2222
Q ss_pred chh---hhc--c-C----CCCCccc--cCCHHHHHHHHHhCCCEEEEEe
Q 015966 338 YHF---ADL--Y-G----QEDEMSI--ELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 338 Yh~---~d~--~-g----~~~~~~i--eLS~EEl~~ll~~~GFeii~e~ 374 (397)
|.. ... . + .....++ -+|.+|+.+++++ ||+++...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~d~~~s~~~~~~~~el~~ll~~-Gf~~~~~~ 221 (232)
T PRK06202 174 YALFWAGTRLLSRSSFVHTDGLLSVRRSYTPAELAALAPQ-GWRVERQW 221 (232)
T ss_pred HHHHHHHHHHhccCceeeccchHHHHhhcCHHHHHHHhhC-CCeEEecc
Confidence 210 000 0 0 0111233 4799999999999 99998754
|
|
| >PRK14968 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.6e-10 Score=103.60 Aligned_cols=129 Identities=20% Similarity=0.278 Sum_probs=90.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|.++..|+++|.+|+|+|+|..|+..++..+... . + .
T Consensus 23 ~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~-----------------~------~---~----- 71 (188)
T PRK14968 23 KGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLN-----------------N------I---R----- 71 (188)
T ss_pred CCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHc-----------------C------C---C-----
Confidence 4568999999999999999999999999999999997765322100 0 0 0
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEee--cc-------------------CChhhHHHHHHHHHHhccCC
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF--FI-------------------DTAHNIVEYIEIISRILKDG 327 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F--FI-------------------Dta~Ni~~yi~~I~~~LKPG 327 (397)
..++.++.+|+.+... .++||+|++.. +. +....+..+++.+.++||||
T Consensus 72 ------~~~~~~~~~d~~~~~~----~~~~d~vi~n~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~g 141 (188)
T PRK14968 72 ------NNGVEVIRSDLFEPFR----GDKFDVILFNPPYLPTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPG 141 (188)
T ss_pred ------CcceEEEecccccccc----ccCceEEEECCCcCCCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCC
Confidence 0114556777766432 34799998652 22 11333567899999999999
Q ss_pred cEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 328 GVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 328 G~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
|.++-+-+ -....+++.+++.+.||++....
T Consensus 142 G~~~~~~~----------------~~~~~~~l~~~~~~~g~~~~~~~ 172 (188)
T PRK14968 142 GRILLLQS----------------SLTGEDEVLEYLEKLGFEAEVVA 172 (188)
T ss_pred eEEEEEEc----------------ccCCHHHHHHHHHHCCCeeeeee
Confidence 98873211 01235789999999999887643
|
|
| >TIGR02081 metW methionine biosynthesis protein MetW | Back alignment and domain information |
|---|
Probab=99.26 E-value=8.5e-11 Score=107.95 Aligned_cols=145 Identities=17% Similarity=0.186 Sum_probs=94.7
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCC
Q 015966 175 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (397)
Q Consensus 175 l~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~ 253 (397)
++.+.+.++ ++.+|||+|||+|.++..|++. +..++|+|+|..|+..++-
T Consensus 4 ~~~i~~~i~-----~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~------------------------ 54 (194)
T TIGR02081 4 LESILNLIP-----PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVA------------------------ 54 (194)
T ss_pred HHHHHHhcC-----CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHH------------------------
Confidence 344555443 4568999999999999999865 6788999999999865430
Q ss_pred CcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe
Q 015966 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 333 (397)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~ 333 (397)
.++.++.+|+.+... +..+++||+|++...+....|....++.+.+++|++.+ .+
T Consensus 55 ----------------------~~~~~~~~d~~~~l~-~~~~~sfD~Vi~~~~l~~~~d~~~~l~e~~r~~~~~ii--~~ 109 (194)
T TIGR02081 55 ----------------------RGVNVIQGDLDEGLE-AFPDKSFDYVILSQTLQATRNPEEILDEMLRVGRHAIV--SF 109 (194)
T ss_pred ----------------------cCCeEEEEEhhhccc-ccCCCCcCEEEEhhHhHcCcCHHHHHHHHHHhCCeEEE--Ec
Confidence 013445667654211 12357899999987666667788899999998886532 22
Q ss_pred cCCcch------hhh--c--cC-------CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 334 GPLLYH------FAD--L--YG-------QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 334 GPLlYh------~~d--~--~g-------~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
+...|. +.. . .+ ..+ .....+.+++.+++++.||++++..
T Consensus 110 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~ll~~~Gf~v~~~~ 166 (194)
T TIGR02081 110 PNFGYWRVRWSILTKGRMPVTGELPYDWYNTP-NIHFCTIADFEDLCGELNLRILDRA 166 (194)
T ss_pred CChhHHHHHHHHHhCCccccCCCCCccccCCC-CcccCcHHHHHHHHHHCCCEEEEEE
Confidence 111110 000 0 00 000 0124699999999999999999854
|
This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. |
| >TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases | Back alignment and domain information |
|---|
Probab=99.26 E-value=2.4e-10 Score=104.63 Aligned_cols=142 Identities=20% Similarity=0.213 Sum_probs=99.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC---eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF---ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf---~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|.++..+++.+. +++|+|.|..|+..++-..+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~--------------------------------- 85 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE--------------------------------- 85 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---------------------------------
Confidence 567999999999999999999876 79999999999865541110
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecC---Cc----c
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP---LL----Y 338 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GP---Ll----Y 338 (397)
...++.+..+|+.+.. ...+.||+|++.+.+....+....++.+.++|||||+++-++. .. .
T Consensus 86 --------~~~~i~~~~~d~~~~~---~~~~~~D~i~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~~~~~~~~ 154 (223)
T TIGR01934 86 --------LPLNIEFIQADAEALP---FEDNSFDAVTIAFGLRNVTDIQKALREMYRVLKPGGRLVILEFSKPANALLKK 154 (223)
T ss_pred --------cCCCceEEecchhcCC---CCCCcEEEEEEeeeeCCcccHHHHHHHHHHHcCCCcEEEEEEecCCCchhhHH
Confidence 0012667888887742 2246899999888777777788999999999999999995321 10 0
Q ss_pred ----hhhhc---cCC---CCCc---------cccCCHHHHHHHHHhCCCEEEEEe
Q 015966 339 ----HFADL---YGQ---EDEM---------SIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 339 ----h~~d~---~g~---~~~~---------~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
+.... .+. .... .-.++.++++.++++.||+++..+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 209 (223)
T TIGR01934 155 FYKFYLKNVLPSIGGLISKNAEAYTYLPESIRAFPSQEELAAMLKEAGFEEVRYR 209 (223)
T ss_pred HHHHHHHHhhhhhhhhhcCCchhhHHHHHHHHhCCCHHHHHHHHHHcCCccceee
Confidence 00000 000 0000 113588999999999999988754
|
Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases. |
| >PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.8e-11 Score=100.76 Aligned_cols=93 Identities=19% Similarity=0.199 Sum_probs=68.7
Q ss_pred EEEecCCCChhHHHHHHcC-----CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 193 CLVPGAGLGRLALEISHLG-----FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 193 VLvPGCGlGRLa~eLA~~G-----f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
|||+|||+|+.+..|++.. -.++|+|+|..||..++.... .. .
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~---~~-----------------------~------ 48 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFS---ED-----------------------G------ 48 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSH---HT-----------------------T------
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhch---hc-----------------------C------
Confidence 7999999999999999884 799999999999986652110 00 0
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee---ccCChhhHHHHHHHHHHhccCCc
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGG 328 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yi~~I~~~LKPGG 328 (397)
..+.++++|+.++- ...++||+|++.+ ..-+.+.+...++.+.++|||||
T Consensus 49 --------~~~~~~~~D~~~l~---~~~~~~D~v~~~~~~~~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 49 --------PKVRFVQADARDLP---FSDGKFDLVVCSGLSLHHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp --------TTSEEEESCTTCHH---HHSSSEEEEEE-TTGGGGSSHHHHHHHHHHHHHTEEEEE
T ss_pred --------CceEEEECCHhHCc---ccCCCeeEEEEcCCccCCCCHHHHHHHHHHHHHHhCCCC
Confidence 02678999998863 2357999999942 23445668999999999999998
|
|
| >PLN02336 phosphoethanolamine N-methyltransferase | Back alignment and domain information |
|---|
Probab=99.24 E-value=7.8e-11 Score=122.00 Aligned_cols=141 Identities=15% Similarity=0.097 Sum_probs=96.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|+++..|++++..|+|+|+|..|+..++-. +.
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~-~~----------------------------------- 80 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESI-NG----------------------------------- 80 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHH-hc-----------------------------------
Confidence 456899999999999999999999999999999998644310 00
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCC
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~ 346 (397)
...++.++.+|+.+.. .+...++||+|++.+.+. +...+.+.++.++++|||||+++-.-.. ++...+...
T Consensus 81 -----~~~~i~~~~~d~~~~~-~~~~~~~fD~I~~~~~l~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~-~~~~~~~~~ 153 (475)
T PLN02336 81 -----HYKNVKFMCADVTSPD-LNISDGSVDLIFSNWLLMYLSDKEVENLAERMVKWLKVGGYIFFRESC-FHQSGDSKR 153 (475)
T ss_pred -----cCCceEEEEecccccc-cCCCCCCEEEEehhhhHHhCCHHHHHHHHHHHHHhcCCCeEEEEEecc-CCCCCcccc
Confidence 0012667888876421 122357899999876433 2234789999999999999999842211 111110000
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 347 EDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 347 ~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
....+.-.+..++.+++.+.||..+.
T Consensus 154 ~~~~~~~~~~~~~~~~f~~~~~~~~~ 179 (475)
T PLN02336 154 KNNPTHYREPRFYTKVFKECHTRDED 179 (475)
T ss_pred cCCCCeecChHHHHHHHHHheeccCC
Confidence 00113446788999999999998775
|
|
| >PRK14967 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.7e-10 Score=108.41 Aligned_cols=125 Identities=15% Similarity=0.160 Sum_probs=87.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|.++..+|+.|. .|+|+|+|..|+..++-.+... .+
T Consensus 36 ~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~--------------------------~~----- 84 (223)
T PRK14967 36 PGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLA--------------------------GV----- 84 (223)
T ss_pred CCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHh--------------------------CC-----
Confidence 457999999999999999999988 8999999999998765221100 00
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--eccCCh-------------------hhHHHHHHHHHHhccC
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA-------------------HNIVEYIEIISRILKD 326 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta-------------------~Ni~~yi~~I~~~LKP 326 (397)
++.++.+|+.+.. ..++||+|++. |+-... ..+..+++.+.++|||
T Consensus 85 ---------~~~~~~~d~~~~~----~~~~fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~ 151 (223)
T PRK14967 85 ---------DVDVRRGDWARAV----EFRPFDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAP 151 (223)
T ss_pred ---------eeEEEECchhhhc----cCCCeeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCC
Confidence 1456778887642 24689999986 332211 1245678899999999
Q ss_pred CcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 327 GGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 327 GG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
||+++-+ . .. ....+++.+++++.||.+...
T Consensus 152 gG~l~~~----~--~~----------~~~~~~~~~~l~~~g~~~~~~ 182 (223)
T PRK14967 152 GGSLLLV----Q--SE----------LSGVERTLTRLSEAGLDAEVV 182 (223)
T ss_pred CcEEEEE----E--ec----------ccCHHHHHHHHHHCCCCeEEE
Confidence 9999831 1 00 124567778888888876664
|
|
| >PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed | Back alignment and domain information |
|---|
Probab=99.23 E-value=2.4e-10 Score=106.07 Aligned_cols=121 Identities=15% Similarity=0.163 Sum_probs=90.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++..+|++ +..|+|+|.|..|+..++......
T Consensus 45 ~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~-------------------------------- 92 (187)
T PRK00107 45 GGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAEL-------------------------------- 92 (187)
T ss_pred CCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHc--------------------------------
Confidence 3679999999999999999864 679999999999998776322110
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCC
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~ 346 (397)
.. .++++..+|+.++. . .++||+|++..+ .++.++++.++++|||||+++-+-+
T Consensus 93 ------~l-~~i~~~~~d~~~~~---~-~~~fDlV~~~~~----~~~~~~l~~~~~~LkpGG~lv~~~~----------- 146 (187)
T PRK00107 93 ------GL-KNVTVVHGRAEEFG---Q-EEKFDVVTSRAV----ASLSDLVELCLPLLKPGGRFLALKG----------- 146 (187)
T ss_pred ------CC-CCEEEEeccHhhCC---C-CCCccEEEEccc----cCHHHHHHHHHHhcCCCeEEEEEeC-----------
Confidence 00 12678888887753 2 468999997653 4577899999999999999995311
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 347 EDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 347 ~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
.-...++.++.+..|+.+.+.
T Consensus 147 ------~~~~~~l~~~~~~~~~~~~~~ 167 (187)
T PRK00107 147 ------RDPEEEIAELPKALGGKVEEV 167 (187)
T ss_pred ------CChHHHHHHHHHhcCceEeee
Confidence 123456777778889998774
|
|
| >KOG1271 consensus Methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=5.7e-11 Score=110.53 Aligned_cols=151 Identities=21% Similarity=0.338 Sum_probs=101.5
Q ss_pred ccccChhHHhhchHHHHHHHHhhCCCCCC-CCCCeEEEecCCCChhHHHHHHcCCe--EEEEeCCHHHHHHHHhhhhccc
Q 015966 159 WAAEGKTERDQCYKPILEELDALFPNRSK-ESPPACLVPGAGLGRLALEISHLGFI--SQGNEFSYYMMICSSFILNHTE 235 (397)
Q Consensus 159 WS~eG~~ER~~~y~pIl~~L~~~~p~~~~-~~~~rVLvPGCGlGRLa~eLA~~Gf~--V~GnD~S~~ML~~s~fiLn~~~ 235 (397)
|-.+..+|| |+++|..+...... ....||||+|||.|.+.+.||+.||. .+|+|+|...+..|+-|..+..
T Consensus 42 WFg~~ae~r------iv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~ 115 (227)
T KOG1271|consen 42 WFGEDAEER------IVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDG 115 (227)
T ss_pred ecCCcHHHH------HHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcC
Confidence 766767777 77888765541101 13349999999999999999999996 5999999999988875543321
Q ss_pred ccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEE---e----eccC
Q 015966 236 TAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---C----FFID 308 (397)
Q Consensus 236 ~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT---~----FFID 308 (397)
. +| .++|-+.|+++-- ...++||+|.- . ..-|
T Consensus 116 ~-------------~n-------------------------~I~f~q~DI~~~~---~~~~qfdlvlDKGT~DAisLs~d 154 (227)
T KOG1271|consen 116 F-------------SN-------------------------EIRFQQLDITDPD---FLSGQFDLVLDKGTLDAISLSPD 154 (227)
T ss_pred C-------------Cc-------------------------ceeEEEeeccCCc---ccccceeEEeecCceeeeecCCC
Confidence 1 11 1344444444311 11245555541 1 1112
Q ss_pred Chh-hHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 309 TAH-NIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 309 ta~-Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
-+. -+.-|+..+.++|+|||+|+-. +-..|.+||.+.++..||++..+
T Consensus 155 ~~~~r~~~Y~d~v~~ll~~~gifvIt-----------------SCN~T~dELv~~f~~~~f~~~~t 203 (227)
T KOG1271|consen 155 GPVGRLVVYLDSVEKLLSPGGIFVIT-----------------SCNFTKDELVEEFENFNFEYLST 203 (227)
T ss_pred CcccceeeehhhHhhccCCCcEEEEE-----------------ecCccHHHHHHHHhcCCeEEEEe
Confidence 111 1356999999999999999941 45689999999999999988775
|
|
| >TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit | Back alignment and domain information |
|---|
Probab=99.21 E-value=3e-10 Score=94.63 Aligned_cols=100 Identities=19% Similarity=0.088 Sum_probs=71.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|+++..++++ +-.|+|+|.|..|+..++..++.. .+
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~----------------------------~~-- 68 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRF----------------------------GV-- 68 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHh----------------------------CC--
Confidence 4569999999999999999997 358999999999998766322110 00
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
.++.++.+|..+... ...++||+|++..-. ..+.++++.++++|||||++|-
T Consensus 69 ---------~~~~~~~~~~~~~~~--~~~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG~li~ 120 (124)
T TIGR02469 69 ---------SNIVIVEGDAPEALE--DSLPEPDRVFIGGSG---GLLQEILEAIWRRLRPGGRIVL 120 (124)
T ss_pred ---------CceEEEeccccccCh--hhcCCCCEEEECCcc---hhHHHHHHHHHHHcCCCCEEEE
Confidence 014556676543211 123689999875422 2356899999999999999984
|
This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL. |
| >KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.20 E-value=9.1e-11 Score=113.85 Aligned_cols=145 Identities=21% Similarity=0.273 Sum_probs=103.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--------CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCcc
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--------FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLR 260 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--------f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr 260 (397)
++.+|||.|||||-+|+-|.+.- -.|++.|+|++||.++.. ++.+ |
T Consensus 100 ~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkq---Ra~~-----------------------~ 153 (296)
T KOG1540|consen 100 KGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQ---RAKK-----------------------R 153 (296)
T ss_pred CCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHH---HHhh-----------------------c
Confidence 57899999999999999997762 469999999999987651 1110 1
Q ss_pred ccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe-------
Q 015966 261 PVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL------- 333 (397)
Q Consensus 261 ~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~------- 333 (397)
+++ ....+.++.||..++ |+.+.+||+.+..|=|-...++.+.+++.||+|||||+|..+
T Consensus 154 ~l~----------~~~~~~w~~~dAE~L---pFdd~s~D~yTiafGIRN~th~~k~l~EAYRVLKpGGrf~cLeFskv~~ 220 (296)
T KOG1540|consen 154 PLK----------ASSRVEWVEGDAEDL---PFDDDSFDAYTIAFGIRNVTHIQKALREAYRVLKPGGRFSCLEFSKVEN 220 (296)
T ss_pred CCC----------cCCceEEEeCCcccC---CCCCCcceeEEEecceecCCCHHHHHHHHHHhcCCCcEEEEEEcccccc
Confidence 111 011378899998776 345799999998888888888999999999999999999841
Q ss_pred cCCcchhhh-c------cCC---CCCc-------cc--cCCHHHHHHHHHhCCCEEEE
Q 015966 334 GPLLYHFAD-L------YGQ---EDEM-------SI--ELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 334 GPLlYh~~d-~------~g~---~~~~-------~i--eLS~EEl~~ll~~~GFeii~ 372 (397)
-|+.|-+.. . .|. .+-. +| -++.||+..+++.+||....
T Consensus 221 ~~l~~fy~~ysf~VlpvlG~~iagd~~sYqYLveSI~rfp~qe~f~~miedaGF~~~~ 278 (296)
T KOG1540|consen 221 EPLKWFYDQYSFDVLPVLGEIIAGDRKSYQYLVESIRRFPPQEEFASMIEDAGFSSVN 278 (296)
T ss_pred HHHHHHHHhhhhhhhchhhHhhhhhHhhhhhHHhhhhcCCCHHHHHHHHHHcCCcccc
Confidence 233322111 0 000 0001 22 25899999999999998875
|
|
| >PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A | Back alignment and domain information |
|---|
Probab=99.19 E-value=9.4e-11 Score=97.68 Aligned_cols=104 Identities=23% Similarity=0.315 Sum_probs=77.1
Q ss_pred CCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 190 PPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
+.+|||||||+|+++..++++| ..++|+|+++..+..++..+...
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~---------------------------------- 46 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRN---------------------------------- 46 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHC----------------------------------
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHc----------------------------------
Confidence 3589999999999999999999 99999999999998887443211
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-ccCCh-------hhHHHHHHHHHHhccCCcEEEE
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA-------HNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta-------~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
....++.++.+|+.++.. +...++||+|+++- |.... ....+.++.+.++|||||+++-
T Consensus 47 ----~~~~~~~~~~~D~~~~~~-~~~~~~~D~Iv~npP~~~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~ 113 (117)
T PF13659_consen 47 ----GLDDRVEVIVGDARDLPE-PLPDGKFDLIVTNPPYGPRSGDKAALRRLYSRFLEAAARLLKPGGVLVF 113 (117)
T ss_dssp ----TTTTTEEEEESHHHHHHH-TCTTT-EEEEEE--STTSBTT----GGCHHHHHHHHHHHHEEEEEEEEE
T ss_pred ----cCCceEEEEECchhhchh-hccCceeEEEEECCCCccccccchhhHHHHHHHHHHHHHHcCCCeEEEE
Confidence 011237889999988741 12368999999983 33321 1235789999999999999984
|
... |
| >PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.4e-10 Score=100.67 Aligned_cols=122 Identities=14% Similarity=-0.017 Sum_probs=86.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++..+++++ ..|+|+|+|..|+..++-..... .+
T Consensus 31 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~----------------------------~~-- 80 (187)
T PRK08287 31 RAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRF----------------------------GC-- 80 (187)
T ss_pred CCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHh----------------------------CC--
Confidence 56799999999999999999885 58999999999997765211100 00
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCC
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~ 346 (397)
.++.++.+|..... .+.||+|+..... .++.++++.++++|||||+++-...
T Consensus 81 ---------~~i~~~~~d~~~~~-----~~~~D~v~~~~~~---~~~~~~l~~~~~~Lk~gG~lv~~~~----------- 132 (187)
T PRK08287 81 ---------GNIDIIPGEAPIEL-----PGKADAIFIGGSG---GNLTAIIDWSLAHLHPGGRLVLTFI----------- 132 (187)
T ss_pred ---------CCeEEEecCchhhc-----CcCCCEEEECCCc---cCHHHHHHHHHHhcCCCeEEEEEEe-----------
Confidence 12566777753221 3579999875432 3466789999999999999984110
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 347 EDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 347 ~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
..-+.+++.+++++.||+.++.
T Consensus 133 -----~~~~~~~~~~~l~~~g~~~~~~ 154 (187)
T PRK08287 133 -----LLENLHSALAHLEKCGVSELDC 154 (187)
T ss_pred -----cHhhHHHHHHHHHHCCCCcceE
Confidence 1234578899999999976553
|
|
| >TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific | Back alignment and domain information |
|---|
Probab=99.17 E-value=8.4e-10 Score=103.63 Aligned_cols=136 Identities=18% Similarity=0.182 Sum_probs=93.4
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
+++.+.+.++. ...+|||+|||+|.++..+++. +..++|+|+|..|+..++..+...
T Consensus 76 l~~~~l~~~~~----~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~----------------- 134 (251)
T TIGR03534 76 LVEAALERLKK----GPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARL----------------- 134 (251)
T ss_pred HHHHHHHhccc----CCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-----------------
Confidence 44444444431 3468999999999999999987 678999999999998776332110
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-ccCC------h--------------
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDT------A-------------- 310 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-FIDt------a-------------- 310 (397)
. . .++.+..+|+.+... .++||+|+++. |+.. .
T Consensus 135 ---------~------------~-~~~~~~~~d~~~~~~----~~~fD~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~ 188 (251)
T TIGR03534 135 ---------G------------L-DNVTFLQSDWFEPLP----GGKFDLIVSNPPYIPEADIHLLDPEVRFHEPRLALFG 188 (251)
T ss_pred ---------C------------C-CeEEEEECchhccCc----CCceeEEEECCCCCchhhhhhcChhhhhcCCHHHHcC
Confidence 0 0 126778899876432 47899999862 2210 0
Q ss_pred -----hhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 311 -----HNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 311 -----~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
......++.+.++|||||+++-- .+ .-..+++++++++.||+.++.
T Consensus 189 ~~~~~~~~~~~i~~~~~~L~~gG~~~~~----~~-------------~~~~~~~~~~l~~~gf~~v~~ 239 (251)
T TIGR03534 189 GEDGLDFYRRIIAQAPRLLKPGGWLLLE----IG-------------YDQGEAVRALFEAAGFADVET 239 (251)
T ss_pred CCcHHHHHHHHHHHHHHhcccCCEEEEE----EC-------------ccHHHHHHHHHHhCCCCceEE
Confidence 11235788999999999998831 10 123578999999999987654
|
Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3. |
| >PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.7e-10 Score=107.38 Aligned_cols=145 Identities=19% Similarity=0.133 Sum_probs=93.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++..||++ +..|+|+|+|..|+..++-.+... .
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~----------------------------~--- 88 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEE----------------------------G--- 88 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHc----------------------------C---
Confidence 4679999999999999999987 457999999999998665221100 0
Q ss_pred CCCCCCCCCCcceeEeccc-ccccCCCCCCCCccEEEEeecc---CChh-----hHHHHHHHHHHhccCCcEEEEecCCc
Q 015966 267 IHPASAGITEGFSMCGGDF-VEVYSDPSQVGAWDAVVTCFFI---DTAH-----NIVEYIEIISRILKDGGVWINLGPLL 337 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF-~ely~~~~~~~~fD~VvT~FFI---Dta~-----Ni~~yi~~I~~~LKPGG~wIN~GPLl 337 (397)
..++.++.+|+ ..+.. ....++||+|++.|-. .... ....+++.++++|||||+++-.-+
T Consensus 89 --------~~~v~~~~~d~~~~l~~-~~~~~~~D~V~~~~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~~-- 157 (202)
T PRK00121 89 --------LTNLRLLCGDAVEVLLD-MFPDGSLDRIYLNFPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFATD-- 157 (202)
T ss_pred --------CCCEEEEecCHHHHHHH-HcCccccceEEEECCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEcC--
Confidence 01367788898 43321 0125789999875421 1111 145789999999999999984211
Q ss_pred chhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeecCCCCCCCccccccccc
Q 015966 338 YHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQVSF 392 (397)
Q Consensus 338 Yh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~~~Y~~d~~sm~~~~Y 392 (397)
..--.+++.+.+++.||..... .-.|+..+.....+.|
T Consensus 158 --------------~~~~~~~~~~~~~~~g~~~~~~---~~~~~~~~~~~~~~~~ 195 (202)
T PRK00121 158 --------------WEGYAEYMLEVLSAEGGFLVSE---AGDYVPRPEGRPMTEY 195 (202)
T ss_pred --------------CHHHHHHHHHHHHhCccccccc---chhhcccCccCCCcHH
Confidence 1123456777888889866522 2244444444444444
|
|
| >TIGR01177 conserved hypothetical protein TIGR01177 | Back alignment and domain information |
|---|
Probab=99.15 E-value=3.2e-10 Score=112.93 Aligned_cols=123 Identities=21% Similarity=0.195 Sum_probs=87.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||||||+|.++.+.+..|..|+|+|++..|+..++..++.. .+
T Consensus 182 ~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~----------------------------g~---- 229 (329)
T TIGR01177 182 EGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHY----------------------------GI---- 229 (329)
T ss_pred CcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHh----------------------------CC----
Confidence 5679999999999999999999999999999999998766322110 00
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--ecc----C--Ch-hhHHHHHHHHHHhccCCcEEEEecCCcch
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFI----D--TA-HNIVEYIEIISRILKDGGVWINLGPLLYH 339 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFI----D--ta-~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh 339 (397)
.++.+..+|+.++. ...+.||+|++. |-+ . .. ....+.++.++++|||||.++-.-|
T Consensus 230 -------~~i~~~~~D~~~l~---~~~~~~D~Iv~dPPyg~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~~---- 295 (329)
T TIGR01177 230 -------EDFFVKRGDATKLP---LSSESVDAIATDPPYGRSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAVP---- 295 (329)
T ss_pred -------CCCeEEecchhcCC---cccCCCCEEEECCCCcCcccccCCchHHHHHHHHHHHHHHccCCcEEEEEEc----
Confidence 01466788988752 225789999986 321 1 11 2246889999999999999885322
Q ss_pred hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 340 FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 340 ~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
+..++..+++++|| ++..
T Consensus 296 ---------------~~~~~~~~~~~~g~-i~~~ 313 (329)
T TIGR01177 296 ---------------TRIDLESLAEDAFR-VVKR 313 (329)
T ss_pred ---------------CCCCHHHHHhhcCc-chhe
Confidence 11244467889999 6653
|
This family is found exclusively in the Archaea. |
| >PHA03411 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.4e-10 Score=109.87 Aligned_cols=133 Identities=16% Similarity=0.088 Sum_probs=94.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
...+|||+|||+|.++..++++ +.+|+|+|+|..|+..++.. +|
T Consensus 64 ~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n---------------------------------~~- 109 (279)
T PHA03411 64 CTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRL---------------------------------LP- 109 (279)
T ss_pred cCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh---------------------------------Cc-
Confidence 3568999999999999999876 57999999999999766511 01
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--eccCCh---hh---------------HHHHHHHHHHhccC
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA---HN---------------IVEYIEIISRILKD 326 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta---~N---------------i~~yi~~I~~~LKP 326 (397)
++.++.+|++++.. ..+||+|++. |+.... .+ +.+.++.+..+|||
T Consensus 110 ----------~v~~v~~D~~e~~~----~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p 175 (279)
T PHA03411 110 ----------EAEWITSDVFEFES----NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVP 175 (279)
T ss_pred ----------CCEEEECchhhhcc----cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecC
Confidence 15678899987532 3689999985 653211 22 23556777788899
Q ss_pred CcEEEEe--cCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeecCCCCC
Q 015966 327 GGVWINL--GPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYT 381 (397)
Q Consensus 327 GG~wIN~--GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~~~Y~ 381 (397)
+|..+-. |--+| .-.|+.+|++++++..||....-=.+++.|-
T Consensus 176 ~G~~~~~yss~~~y------------~~sl~~~~y~~~l~~~g~~~~~~~~~~~~~~ 220 (279)
T PHA03411 176 TGSAGFAYSGRPYY------------DGTMKSNKYLKWSKQTGLVTYAGCGIDTSIY 220 (279)
T ss_pred CceEEEEEeccccc------------cccCCHHHHHHHHHhcCcEecCCCCccccee
Confidence 9955531 21122 2349999999999999999876555665543
|
|
| >PRK04266 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.10 E-value=3e-09 Score=101.55 Aligned_cols=143 Identities=17% Similarity=0.089 Sum_probs=87.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++..||+.. -.|+|+|+|..||.... ..+.+.
T Consensus 72 ~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~---~~a~~~----------------------------- 119 (226)
T PRK04266 72 KGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELL---EVAEER----------------------------- 119 (226)
T ss_pred CCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHH---HHhhhc-----------------------------
Confidence 67799999999999999999872 47999999999986332 111100
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCC
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~ 346 (397)
.++..+.+|..+........+.||+|+.. +.........++.++++|||||.++-. +-|+-.+ ...
T Consensus 120 ---------~nv~~i~~D~~~~~~~~~l~~~~D~i~~d--~~~p~~~~~~L~~~~r~LKpGG~lvI~--v~~~~~d-~~~ 185 (226)
T PRK04266 120 ---------KNIIPILADARKPERYAHVVEKVDVIYQD--VAQPNQAEIAIDNAEFFLKDGGYLLLA--IKARSID-VTK 185 (226)
T ss_pred ---------CCcEEEECCCCCcchhhhccccCCEEEEC--CCChhHHHHHHHHHHHhcCCCcEEEEE--Eeccccc-CcC
Confidence 12455667765421000112569999753 222222345689999999999999953 1121111 000
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEEeecCCCCCC
Q 015966 347 EDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTT 382 (397)
Q Consensus 347 ~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~~~Y~~ 382 (397)
. ..... ++..+.++++||++++... ..+|..
T Consensus 186 ~---~~~~~-~~~~~~l~~aGF~~i~~~~-l~p~~~ 216 (226)
T PRK04266 186 D---PKEIF-KEEIRKLEEGGFEILEVVD-LEPYHK 216 (226)
T ss_pred C---HHHHH-HHHHHHHHHcCCeEEEEEc-CCCCcC
Confidence 1 11233 4455889999999987543 344544
|
|
| >PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.5e-09 Score=106.24 Aligned_cols=176 Identities=16% Similarity=0.162 Sum_probs=112.6
Q ss_pred chhhHHHHHHHHHH---------------hcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHH
Q 015966 143 ADVDKVRCIIRNIV---------------RDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEI 207 (397)
Q Consensus 143 ~d~dkv~stL~q~~---------------RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eL 207 (397)
.+..++..+|++|. -+|-+.-+-.| |..++++. ++.+|||+|||.|...+.+
T Consensus 67 ~~~~~l~~~l~~l~PWRKGPf~l~gi~IDtEWrSd~KW~r----------l~p~l~~L---~gk~VLDIGC~nGY~~frM 133 (315)
T PF08003_consen 67 EQRQQLEQLLKALMPWRKGPFSLFGIHIDTEWRSDWKWDR----------LLPHLPDL---KGKRVLDIGCNNGYYSFRM 133 (315)
T ss_pred HHHHHHHHHHHhhCCcccCCcccCCEeecccccccchHHH----------HHhhhCCc---CCCEEEEecCCCcHHHHHH
Confidence 55677777777762 34444433333 34444322 6789999999999999999
Q ss_pred HHcCCe-EEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccc
Q 015966 208 SHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFV 286 (397)
Q Consensus 208 A~~Gf~-V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ 286 (397)
+.+|.. |.|+|-+..-+....++-+...... . ..++ ....
T Consensus 134 ~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~~----------------------~----------------~~~l-plgv 174 (315)
T PF08003_consen 134 LGRGAKSVIGIDPSPLFYLQFEAIKHFLGQDP----------------------P----------------VFEL-PLGV 174 (315)
T ss_pred hhcCCCEEEEECCChHHHHHHHHHHHHhCCCc----------------------c----------------EEEc-Ccch
Confidence 999985 9999999877665554432110000 0 0011 0111
Q ss_pred cccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE-----ecCCcch--hhhccCCCCCccccCCHHHH
Q 015966 287 EVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN-----LGPLLYH--FADLYGQEDEMSIELSLEDV 359 (397)
Q Consensus 287 ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN-----~GPLlYh--~~d~~g~~~~~~ieLS~EEl 359 (397)
+..|. .+.||+|+++=.|=...+.++.|+.+.+.|||||.+|- -|+.-.. -++.|..-++..+-.|..-|
T Consensus 175 --E~Lp~-~~~FDtVF~MGVLYHrr~Pl~~L~~Lk~~L~~gGeLvLETlvi~g~~~~~L~P~~rYa~m~nv~FiPs~~~L 251 (315)
T PF08003_consen 175 --EDLPN-LGAFDTVFSMGVLYHRRSPLDHLKQLKDSLRPGGELVLETLVIDGDENTVLVPEDRYAKMRNVWFIPSVAAL 251 (315)
T ss_pred --hhccc-cCCcCEEEEeeehhccCCHHHHHHHHHHhhCCCCEEEEEEeeecCCCceEEccCCcccCCCceEEeCCHHHH
Confidence 12223 57899999884444455678999999999999999992 1222111 11223333334556799999
Q ss_pred HHHHHhCCCEEEEE
Q 015966 360 KRVALHYGFEFEKE 373 (397)
Q Consensus 360 ~~ll~~~GFeii~e 373 (397)
+.+++++||+.++-
T Consensus 252 ~~wl~r~gF~~v~~ 265 (315)
T PF08003_consen 252 KNWLERAGFKDVRC 265 (315)
T ss_pred HHHHHHcCCceEEE
Confidence 99999999998874
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification |
| >PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=2.4e-09 Score=98.96 Aligned_cols=127 Identities=15% Similarity=0.093 Sum_probs=89.6
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|.++.++|++ +-.|+|+|.|..|+..++...... .
T Consensus 40 ~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~----------------------------g-- 89 (198)
T PRK00377 40 KGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKF----------------------------G-- 89 (198)
T ss_pred CcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHh----------------------------C--
Confidence 6779999999999999999875 357999999999998766322110 0
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccC
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g 345 (397)
...++.++.+|+.++.. ...+.||+|+.... ..++.++++.+.++|||||++|-.-+ .
T Consensus 90 --------~~~~v~~~~~d~~~~l~--~~~~~~D~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~~~~------~--- 147 (198)
T PRK00377 90 --------VLNNIVLIKGEAPEILF--TINEKFDRIFIGGG---SEKLKEIISASWEIIKKGGRIVIDAI------L--- 147 (198)
T ss_pred --------CCCCeEEEEechhhhHh--hcCCCCCEEEECCC---cccHHHHHHHHHHHcCCCcEEEEEee------c---
Confidence 01236677888876432 12368999987542 24567899999999999999883111 0
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 346 QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 346 ~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
.-+.+++..++++.||..+..+
T Consensus 148 -------~~~~~~~~~~l~~~g~~~~~~~ 169 (198)
T PRK00377 148 -------LETVNNALSALENIGFNLEITE 169 (198)
T ss_pred -------HHHHHHHHHHHHHcCCCeEEEE
Confidence 1235788888999999765543
|
|
| >smart00138 MeTrc Methyltransferase, chemotaxis proteins | Back alignment and domain information |
|---|
Probab=99.08 E-value=7.8e-10 Score=107.43 Aligned_cols=117 Identities=14% Similarity=0.204 Sum_probs=76.5
Q ss_pred CCCeEEEecCCCCh----hHHHHHHc-------CCeEEEEeCCHHHHHHHHhhhhcccccCccccccc----------cc
Q 015966 189 SPPACLVPGAGLGR----LALEISHL-------GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPW----------IH 247 (397)
Q Consensus 189 ~~~rVLvPGCGlGR----La~eLA~~-------Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPf----------i~ 247 (397)
++.+||+.|||+|. ||..|++. ++.|+|+|+|..||..|+-- +||- ..
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~-----------~y~~~~~~~~~~~~~~ 167 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAG-----------IYPERELEDLPKALLA 167 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcC-----------CCCHHHHhcCCHHHHh
Confidence 46899999999997 45555553 47899999999999877621 1210 00
Q ss_pred cccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee---ccCChhhHHHHHHHHHHhc
Q 015966 248 SNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRIL 324 (397)
Q Consensus 248 ~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yi~~I~~~L 324 (397)
.+-.. ... ...+.+ .+...+.|.++|+.+... ..++||+|++.. |++ .++..+.++.++++|
T Consensus 168 ~yf~~--~~~---~~~v~~------~ir~~V~F~~~dl~~~~~---~~~~fD~I~crnvl~yf~-~~~~~~~l~~l~~~L 232 (264)
T smart00138 168 RYFSR--VED---KYRVKP------ELKERVRFAKHNLLAESP---PLGDFDLIFCRNVLIYFD-EPTQRKLLNRFAEAL 232 (264)
T ss_pred hhEEe--CCC---eEEECh------HHhCcCEEeeccCCCCCC---ccCCCCEEEechhHHhCC-HHHHHHHHHHHHHHh
Confidence 00000 000 011100 122358899999887532 257899999853 344 355779999999999
Q ss_pred cCCcEEE
Q 015966 325 KDGGVWI 331 (397)
Q Consensus 325 KPGG~wI 331 (397)
||||+++
T Consensus 233 ~pGG~L~ 239 (264)
T smart00138 233 KPGGYLF 239 (264)
T ss_pred CCCeEEE
Confidence 9999999
|
Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues. |
| >TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU | Back alignment and domain information |
|---|
Probab=99.07 E-value=5.2e-09 Score=102.70 Aligned_cols=140 Identities=13% Similarity=0.045 Sum_probs=91.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
+..+|||+|||+|.++..++++. ..++++|+ +.|+..++-.+. +.
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~---~~----------------------------- 195 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAA---EK----------------------------- 195 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHH---hC-----------------------------
Confidence 56799999999999999999994 67999998 678876552111 00
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCCcEEEEecCCc-------
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLL------- 337 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPGG~wIN~GPLl------- 337 (397)
...+++++++|||.+. .. ..+|+|+...++. ..+.....|+.+++.|||||+++-.-...
T Consensus 196 ------gl~~rv~~~~~d~~~~-~~----~~~D~v~~~~~lh~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~~~~~ 264 (306)
T TIGR02716 196 ------GVADRMRGIAVDIYKE-SY----PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDPENPN 264 (306)
T ss_pred ------CccceEEEEecCccCC-CC----CCCCEEEeEhhhhcCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCch
Confidence 1123478899998763 21 2369988776543 23445789999999999999998532111
Q ss_pred ----chhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 338 ----YHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 338 ----Yh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
+++-...+......-..+.+|++++++++||+.++
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~e~~~ll~~aGf~~v~ 303 (306)
T TIGR02716 265 FDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVT 303 (306)
T ss_pred hhHHHHHHHHcccccccccCCCHHHHHHHHHHcCCCeeE
Confidence 00000000000000012479999999999998765
|
Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d. |
| >TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.7e-09 Score=101.40 Aligned_cols=92 Identities=17% Similarity=0.160 Sum_probs=69.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|+++..|++. |..++|+|+|..|+..|+-. +|
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~---------------------------------~~- 88 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAY---------------------------------LP- 88 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhh---------------------------------CC-
Confidence 4568999999999999999987 68999999999999876510 00
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee---ccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
++.+..+|+.+. ...++||+|++.. +++ ..++..++++++++++ +++|
T Consensus 89 ----------~~~~~~~d~~~~----~~~~sfD~V~~~~vL~hl~-p~~~~~~l~el~r~~~--~~v~ 139 (204)
T TIGR03587 89 ----------NINIIQGSLFDP----FKDNFFDLVLTKGVLIHIN-PDNLPTAYRELYRCSN--RYIL 139 (204)
T ss_pred ----------CCcEEEeeccCC----CCCCCEEEEEECChhhhCC-HHHHHHHHHHHHhhcC--cEEE
Confidence 134567787662 2357999999875 354 3568899999999984 4444
|
Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme |
| >PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins | Back alignment and domain information |
|---|
Probab=99.06 E-value=5.8e-10 Score=104.75 Aligned_cols=131 Identities=16% Similarity=0.164 Sum_probs=91.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
.-.++|+||||.|.|+..||.+.-.++++|+|...|..|+--+. .
T Consensus 43 ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~---~-------------------------------- 87 (201)
T PF05401_consen 43 RYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLA---G-------------------------------- 87 (201)
T ss_dssp SEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTT---T--------------------------------
T ss_pred ccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcC---C--------------------------------
Confidence 34689999999999999999999899999999999987772221 0
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEe---eccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccC
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~---FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g 345 (397)
..++++.++|+.+... .++||+||.. ||++...++..+++.+...|+|||.+|- | |+.+...
T Consensus 88 ------~~~V~~~~~dvp~~~P----~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~-g----~~rd~~c 152 (201)
T PF05401_consen 88 ------LPHVEWIQADVPEFWP----EGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVF-G----HARDANC 152 (201)
T ss_dssp -------SSEEEEES-TTT-------SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEE-E----EE-HHHH
T ss_pred ------CCCeEEEECcCCCCCC----CCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEE-E----EecCCcc
Confidence 0137889999877643 5899999965 7999888899999999999999999994 2 3333210
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 346 QEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 346 ~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
.. -......|.|.+++.+. |..++
T Consensus 153 ~~--wgh~~ga~tv~~~~~~~-~~~~~ 176 (201)
T PF05401_consen 153 RR--WGHAAGAETVLEMLQEH-LTEVE 176 (201)
T ss_dssp HH--TT-S--HHHHHHHHHHH-SEEEE
T ss_pred cc--cCcccchHHHHHHHHHH-hhhee
Confidence 00 01346899999999885 55444
|
The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A. |
| >PTZ00146 fibrillarin; Provisional | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.2e-09 Score=105.20 Aligned_cols=168 Identities=16% Similarity=0.100 Sum_probs=98.3
Q ss_pred HHhcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHHhhh
Q 015966 155 IVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFIL 231 (397)
Q Consensus 155 ~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~ML~~s~fiL 231 (397)
-+|.|..- |. .+-..|..-+......++.+|||+|||+|..+..||+. | =.|+++|+|..|+.- ++
T Consensus 106 eyR~w~p~----rS----Klaa~i~~g~~~l~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~d---Ll 174 (293)
T PTZ00146 106 EYRVWNPF----RS----KLAAAIIGGVANIPIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRD---LT 174 (293)
T ss_pred eeeeeCCc----cc----HHHHHHHCCcceeccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHH---HH
Confidence 38999864 32 34444433333222346789999999999999999987 2 269999999876521 11
Q ss_pred hcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccc--cCCCCCCCCccEEEEeeccCC
Q 015966 232 NHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEV--YSDPSQVGAWDAVVTCFFIDT 309 (397)
Q Consensus 232 n~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~el--y~~~~~~~~fD~VvT~FFIDt 309 (397)
+.+... .++..+.+|++.. |.. ..+.+|+|+.... .
T Consensus 175 ~~ak~r--------------------------------------~NI~~I~~Da~~p~~y~~--~~~~vDvV~~Dva--~ 212 (293)
T PTZ00146 175 NMAKKR--------------------------------------PNIVPIIEDARYPQKYRM--LVPMVDVIFADVA--Q 212 (293)
T ss_pred HHhhhc--------------------------------------CCCEEEECCccChhhhhc--ccCCCCEEEEeCC--C
Confidence 111100 1244566676532 221 1357999976543 1
Q ss_pred hhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeecCCCCCCC
Q 015966 310 AHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTN 383 (397)
Q Consensus 310 a~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~~~Y~~d 383 (397)
..+...++..++++|||||.+|- .+........++ ...-++ +|+ +.|++.||++++... ..+|..+
T Consensus 213 pdq~~il~~na~r~LKpGG~~vI----~ika~~id~g~~-pe~~f~-~ev-~~L~~~GF~~~e~v~-L~Py~~~ 278 (293)
T PTZ00146 213 PDQARIVALNAQYFLKNGGHFII----SIKANCIDSTAK-PEVVFA-SEV-QKLKKEGLKPKEQLT-LEPFERD 278 (293)
T ss_pred cchHHHHHHHHHHhccCCCEEEE----EEeccccccCCC-HHHHHH-HHH-HHHHHcCCceEEEEe-cCCccCC
Confidence 22344566789999999999994 233222100011 011133 445 778899999886543 3455544
|
|
| >TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-08 Score=100.52 Aligned_cols=125 Identities=12% Similarity=0.158 Sum_probs=88.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
+..+|||+|||+|.++..||++ +..|+|+|+|..|+..|+.-.+.. .
T Consensus 121 ~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~--------------------------~----- 169 (284)
T TIGR03533 121 PVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERH--------------------------G----- 169 (284)
T ss_pred CCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc--------------------------C-----
Confidence 3468999999999999999987 578999999999998877322100 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-ccCC------------------------hhhHHHHHHHHH
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDT------------------------AHNIVEYIEIIS 321 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-FIDt------------------------a~Ni~~yi~~I~ 321 (397)
...++.++.+|+.+... .++||+|+++= |+.. ..-....++.+.
T Consensus 170 -------~~~~i~~~~~D~~~~~~----~~~fD~Iv~NPPy~~~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~ 238 (284)
T TIGR03533 170 -------LEDRVTLIQSDLFAALP----GRKYDLIVSNPPYVDAEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAA 238 (284)
T ss_pred -------CCCcEEEEECchhhccC----CCCccEEEECCCCCCccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHH
Confidence 01237788899866332 35799999861 1110 012345688889
Q ss_pred HhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 322 RILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 322 ~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
++|||||+++- .+..+.+++++++.+.||.....
T Consensus 239 ~~L~~gG~l~~------------------e~g~~~~~v~~~~~~~~~~~~~~ 272 (284)
T TIGR03533 239 DHLNENGVLVV------------------EVGNSMEALEEAYPDVPFTWLEF 272 (284)
T ss_pred HhcCCCCEEEE------------------EECcCHHHHHHHHHhCCCceeee
Confidence 99999999883 01234578999999999987654
|
Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors. |
| >PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.01 E-value=8.5e-09 Score=98.60 Aligned_cols=124 Identities=23% Similarity=0.269 Sum_probs=87.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
+..+|||+|||+|.++..+++.. ..|+|+|+|..|+..++-.+..
T Consensus 108 ~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~~--------------------------------- 154 (275)
T PRK09328 108 EPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAKH--------------------------------- 154 (275)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHh---------------------------------
Confidence 56799999999999999999986 7899999999999877632210
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-ccCC-------------------------hhhHHHHHHHH
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDT-------------------------AHNIVEYIEII 320 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-FIDt-------------------------a~Ni~~yi~~I 320 (397)
....++.++.+|+.+.. ..++||+|+++. |+.. ...+..+++.+
T Consensus 155 ------~~~~~i~~~~~d~~~~~----~~~~fD~Iv~npPy~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~ 224 (275)
T PRK09328 155 ------GLGARVEFLQGDWFEPL----PGGRFDLIVSNPPYIPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQA 224 (275)
T ss_pred ------CCCCcEEEEEccccCcC----CCCceeEEEECCCcCCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHH
Confidence 00123677888875532 147899999862 2221 12234678888
Q ss_pred HHhccCCcEEEE-ecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 321 SRILKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 321 ~~~LKPGG~wIN-~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
.++|||||+++- .|+ -..++++.++++.||..+..
T Consensus 225 ~~~Lk~gG~l~~e~g~------------------~~~~~~~~~l~~~gf~~v~~ 260 (275)
T PRK09328 225 PRYLKPGGWLLLEIGY------------------DQGEAVRALLAAAGFADVET 260 (275)
T ss_pred HHhcccCCEEEEEECc------------------hHHHHHHHHHHhCCCceeEE
Confidence 899999999883 111 12367889999999975443
|
|
| >TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase | Back alignment and domain information |
|---|
Probab=99.00 E-value=4.1e-09 Score=98.56 Aligned_cols=109 Identities=15% Similarity=0.091 Sum_probs=76.6
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe---EEEEeCCHHHHHHHHhhhhcccccCccccccccccc
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI---SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~---V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~ 249 (397)
.++..+.+.+.. .++.+|||+|||+|.++..||+++-. |+|+|++..|+..|+..+...
T Consensus 64 ~~~~~~~~~l~~---~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~--------------- 125 (215)
T TIGR00080 64 HMVAMMTELLEL---KPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKL--------------- 125 (215)
T ss_pred HHHHHHHHHhCC---CCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHC---------------
Confidence 344555555432 26779999999999999999998544 999999999998776333210
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcE
Q 015966 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGV 329 (397)
Q Consensus 250 Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~ 329 (397)
. -.++.++.+|..+... ..+.||+|+...-. ..+.+.+.+.|||||+
T Consensus 126 -----------g-------------~~~v~~~~~d~~~~~~---~~~~fD~Ii~~~~~------~~~~~~~~~~L~~gG~ 172 (215)
T TIGR00080 126 -----------G-------------LDNVIVIVGDGTQGWE---PLAPYDRIYVTAAG------PKIPEALIDQLKEGGI 172 (215)
T ss_pred -----------C-------------CCCeEEEECCcccCCc---ccCCCCEEEEcCCc------ccccHHHHHhcCcCcE
Confidence 0 0136778899876432 24689999865322 2345678899999999
Q ss_pred EEE
Q 015966 330 WIN 332 (397)
Q Consensus 330 wIN 332 (397)
+|-
T Consensus 173 lv~ 175 (215)
T TIGR00080 173 LVM 175 (215)
T ss_pred EEE
Confidence 984
|
Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt. |
| >PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=5.7e-09 Score=97.30 Aligned_cols=111 Identities=18% Similarity=0.132 Sum_probs=76.4
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccc
Q 015966 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 248 (397)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~ 248 (397)
+.++..+.+.+.. .++.+|||+|||+|.++..||++ +-.|+|+|+|..|+..++-.+...
T Consensus 58 p~~~~~~~~~l~~---~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~-------------- 120 (205)
T PRK13944 58 PHMVAMMCELIEP---RPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERL-------------- 120 (205)
T ss_pred HHHHHHHHHhcCC---CCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc--------------
Confidence 3355555555432 25679999999999999999875 358999999999997665222110
Q ss_pred ccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCc
Q 015966 249 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGG 328 (397)
Q Consensus 249 ~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG 328 (397)
....++++..+|+.+... ..+.||+|+...-+. .+.+.+.+.|||||
T Consensus 121 ------------------------~~~~~v~~~~~d~~~~~~---~~~~fD~Ii~~~~~~------~~~~~l~~~L~~gG 167 (205)
T PRK13944 121 ------------------------GYWGVVEVYHGDGKRGLE---KHAPFDAIIVTAAAS------TIPSALVRQLKDGG 167 (205)
T ss_pred ------------------------CCCCcEEEEECCcccCCc---cCCCccEEEEccCcc------hhhHHHHHhcCcCc
Confidence 001136788899876432 246899998765433 23457889999999
Q ss_pred EEEE
Q 015966 329 VWIN 332 (397)
Q Consensus 329 ~wIN 332 (397)
++|-
T Consensus 168 ~lvi 171 (205)
T PRK13944 168 VLVI 171 (205)
T ss_pred EEEE
Confidence 9973
|
|
| >PRK06922 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=2.1e-09 Score=115.98 Aligned_cols=104 Identities=17% Similarity=0.111 Sum_probs=76.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++..||++ +..|+|+|+|..|+..++-.+. .
T Consensus 418 ~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~---~------------------------------ 464 (677)
T PRK06922 418 KGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQ---N------------------------------ 464 (677)
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhh---h------------------------------
Confidence 4679999999999999999875 5799999999999976652110 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC-------------ChhhHHHHHHHHHHhccCCcEEEEe
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID-------------TAHNIVEYIEIISRILKDGGVWINL 333 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID-------------ta~Ni~~yi~~I~~~LKPGG~wIN~ 333 (397)
.+.++.++.+|+.++.. ...+++||+|++++.++ ...++...|+.++++|||||.+|..
T Consensus 465 -------~g~~ie~I~gDa~dLp~-~fedeSFDvVVsn~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~ 536 (677)
T PRK06922 465 -------EGRSWNVIKGDAINLSS-SFEKESVDTIVYSSILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIR 536 (677)
T ss_pred -------cCCCeEEEEcchHhCcc-ccCCCCEEEEEEchHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEE
Confidence 00125667888776421 12357899999875322 2356889999999999999999963
|
|
| >PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases | Back alignment and domain information |
|---|
Probab=98.99 E-value=6.8e-09 Score=93.98 Aligned_cols=109 Identities=19% Similarity=0.249 Sum_probs=78.4
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe--EEEEeCCHHHHHHHHhhhhcccccCcccccccccccc
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI--SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~--V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~S 250 (397)
-+++.+... +..+|||+|||+|-++..+|+++-. |+++|+|..++..++.-+.. +.
T Consensus 22 lL~~~l~~~-------~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~----n~----------- 79 (170)
T PF05175_consen 22 LLLDNLPKH-------KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAER----NG----------- 79 (170)
T ss_dssp HHHHHHHHH-------TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHH----TT-----------
T ss_pred HHHHHHhhc-------cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHh----cC-----------
Confidence 466666654 3568999999999999999999876 99999999999877632210 00
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee--ccCCh---hhHHHHHHHHHHhcc
Q 015966 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF--FIDTA---HNIVEYIEIISRILK 325 (397)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F--FIDta---~Ni~~yi~~I~~~LK 325 (397)
. .++.++.+|+.+-.. .++||+|+++- .-... .-+.+.++...++||
T Consensus 80 -----------------------~-~~v~~~~~d~~~~~~----~~~fD~Iv~NPP~~~~~~~~~~~~~~~i~~a~~~Lk 131 (170)
T PF05175_consen 80 -----------------------L-ENVEVVQSDLFEALP----DGKFDLIVSNPPFHAGGDDGLDLLRDFIEQARRYLK 131 (170)
T ss_dssp -----------------------C-TTEEEEESSTTTTCC----TTCEEEEEE---SBTTSHCHHHHHHHHHHHHHHHEE
T ss_pred -----------------------c-ccccccccccccccc----ccceeEEEEccchhcccccchhhHHHHHHHHHHhcc
Confidence 0 115678888766332 58999999984 22211 235678999999999
Q ss_pred CCcEEE
Q 015966 326 DGGVWI 331 (397)
Q Consensus 326 PGG~wI 331 (397)
|||.++
T Consensus 132 ~~G~l~ 137 (170)
T PF05175_consen 132 PGGRLF 137 (170)
T ss_dssp EEEEEE
T ss_pred CCCEEE
Confidence 999886
|
; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A .... |
| >COG4123 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.99 E-value=8.2e-09 Score=100.13 Aligned_cols=132 Identities=17% Similarity=0.212 Sum_probs=99.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-G-f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
...+|||+|||+|-++..||++ . ..++|+|+...|...|+--++. +
T Consensus 44 ~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~l----n---------------------------- 91 (248)
T COG4123 44 KKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVAL----N---------------------------- 91 (248)
T ss_pred cCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHh----C----------------------------
Confidence 4789999999999999999999 6 7899999999998877622211 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--eccCCh----------------hhHHHHHHHHHHhccCCc
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA----------------HNIVEYIEIISRILKDGG 328 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta----------------~Ni~~yi~~I~~~LKPGG 328 (397)
+..++++++++|+.++.. .....+||+|+++ ||-... -++.++++...++|||||
T Consensus 92 ------~l~~ri~v~~~Di~~~~~-~~~~~~fD~Ii~NPPyf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G 164 (248)
T COG4123 92 ------PLEERIQVIEADIKEFLK-ALVFASFDLIICNPPYFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGG 164 (248)
T ss_pred ------cchhceeEehhhHHHhhh-cccccccCEEEeCCCCCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCC
Confidence 123458999999988654 2234579999988 663211 247789999999999999
Q ss_pred EEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeec
Q 015966 329 VWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTI 376 (397)
Q Consensus 329 ~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i 376 (397)
.+.-+-| .....||..++.+++|+..+-..+
T Consensus 165 ~l~~V~r-----------------~erl~ei~~~l~~~~~~~k~i~~V 195 (248)
T COG4123 165 RLAFVHR-----------------PERLAEIIELLKSYNLEPKRIQFV 195 (248)
T ss_pred EEEEEec-----------------HHHHHHHHHHHHhcCCCceEEEEe
Confidence 9884211 245678999999999988876544
|
|
| >TIGR00091 tRNA (guanine-N(7)-)-methyltransferase | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.2e-09 Score=99.14 Aligned_cols=104 Identities=21% Similarity=0.285 Sum_probs=73.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
.+.+|||+|||+|.++..+|++ +..|+|+|+|..|+..++-.+... .
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~--------------------------~----- 64 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKL--------------------------G----- 64 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHh--------------------------C-----
Confidence 4569999999999999999998 568999999999997665221100 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCC----hh--h---HHHHHHHHHHhccCCcEEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT----AH--N---IVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDt----a~--N---i~~yi~~I~~~LKPGG~wIN 332 (397)
. .++.++.+|+.++.......+.+|.|+..| -|. .+ + ..+.++.++++|||||.++-
T Consensus 65 -------l-~ni~~i~~d~~~~~~~~~~~~~~d~v~~~~-pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~ 130 (194)
T TIGR00091 65 -------L-KNLHVLCGDANELLDKFFPDGSLSKVFLNF-PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHF 130 (194)
T ss_pred -------C-CCEEEEccCHHHHHHhhCCCCceeEEEEEC-CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEE
Confidence 0 137889999876421111246899998765 121 10 1 14789999999999999973
|
In E. coli, this protein flanks the DNA repair protein MutY, also called micA. |
| >cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy) | Back alignment and domain information |
|---|
Probab=98.96 E-value=6.6e-09 Score=80.64 Aligned_cols=100 Identities=21% Similarity=0.306 Sum_probs=75.3
Q ss_pred eEEEecCCCChhHHHHHH-cCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCC
Q 015966 192 ACLVPGAGLGRLALEISH-LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA 270 (397)
Q Consensus 192 rVLvPGCGlGRLa~eLA~-~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~ 270 (397)
+||++|||.|.++..+++ .+..++++|.+..++..++......
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~------------------------------------ 44 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL------------------------------------ 44 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc------------------------------------
Confidence 589999999999999998 6779999999999987554211000
Q ss_pred CCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCC-hhhHHHHHHHHHHhccCCcEEEE
Q 015966 271 SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT-AHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 271 ~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDt-a~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
....+.+..+|+.+... ...+.||+|++...+.. ......+++.+.+.|||||+++-
T Consensus 45 ---~~~~~~~~~~~~~~~~~--~~~~~~d~i~~~~~~~~~~~~~~~~l~~~~~~l~~~g~~~~ 102 (107)
T cd02440 45 ---LADNVEVLKGDAEELPP--EADESFDVIISDPPLHHLVEDLARFLEEARRLLKPGGVLVL 102 (107)
T ss_pred ---cccceEEEEcChhhhcc--ccCCceEEEEEccceeehhhHHHHHHHHHHHHcCCCCEEEE
Confidence 01126677888776532 12468999998876665 66788999999999999999983
|
There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.). |
| >PRK07402 precorrin-6B methylase; Provisional | Back alignment and domain information |
|---|
Probab=98.96 E-value=7e-09 Score=95.42 Aligned_cols=99 Identities=19% Similarity=0.153 Sum_probs=69.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++.++|++ +..|+|+|+|..|+..++-.++.. .+
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~----------------------------~~-- 89 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRF----------------------------GV-- 89 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh----------------------------CC--
Confidence 5679999999999999999875 478999999999998765221100 00
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
.++.++.+|+.+.+. .....+|.|+ ++...++.++++.++++|||||++|-
T Consensus 90 ---------~~v~~~~~d~~~~~~--~~~~~~d~v~----~~~~~~~~~~l~~~~~~LkpgG~li~ 140 (196)
T PRK07402 90 ---------KNVEVIEGSAPECLA--QLAPAPDRVC----IEGGRPIKEILQAVWQYLKPGGRLVA 140 (196)
T ss_pred ---------CCeEEEECchHHHHh--hCCCCCCEEE----EECCcCHHHHHHHHHHhcCCCeEEEE
Confidence 125667788755322 1123456653 23344577899999999999999995
|
|
| >TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.8e-08 Score=97.31 Aligned_cols=131 Identities=14% Similarity=0.132 Sum_probs=87.9
Q ss_pred CCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 190 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
..+|||+|||+|.++..++++ |..|+|+|+|..|+..|+.-++. +
T Consensus 87 ~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~----~----------------------------- 133 (251)
T TIGR03704 87 TLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLAD----A----------------------------- 133 (251)
T ss_pred CCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----c-----------------------------
Confidence 458999999999999999876 67899999999999877632210 0
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-ccCCh-------------------------hhHHHHHHHHH
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA-------------------------HNIVEYIEIIS 321 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta-------------------------~Ni~~yi~~I~ 321 (397)
+..++.+|+.+.... ...++||+|+++- |+.+. .-+.+.++.+.
T Consensus 134 ---------~~~~~~~D~~~~l~~-~~~~~fDlVv~NPPy~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~ 203 (251)
T TIGR03704 134 ---------GGTVHEGDLYDALPT-ALRGRVDILAANAPYVPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAP 203 (251)
T ss_pred ---------CCEEEEeechhhcch-hcCCCEeEEEECCCCCCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHH
Confidence 024566777653210 1135799999872 33211 11346777788
Q ss_pred HhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeecCCCCC
Q 015966 322 RILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYT 381 (397)
Q Consensus 322 ~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~~~Y~ 381 (397)
++|||||+++- .++ .-..+++..++++.||+.......+. |+
T Consensus 204 ~~L~~gG~l~l----~~~-------------~~~~~~v~~~l~~~g~~~~~~~~~~~-~~ 245 (251)
T TIGR03704 204 DWLAPGGHLLV----ETS-------------ERQAPLAVEAFARAGLIARVASSEEL-YA 245 (251)
T ss_pred HhcCCCCEEEE----EEC-------------cchHHHHHHHHHHCCCCceeeEcccc-cc
Confidence 99999999883 111 11246899999999998766543333 54
|
This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown. |
| >PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=8.9e-09 Score=105.35 Aligned_cols=116 Identities=15% Similarity=0.076 Sum_probs=79.7
Q ss_pred HHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCC
Q 015966 176 EELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (397)
Q Consensus 176 ~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~ 253 (397)
..|.+++|.. ...+|||+|||+|.++..++++ +..|+++|.|+.|+..|+.-+.. +.
T Consensus 218 rllL~~lp~~---~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~----n~-------------- 276 (378)
T PRK15001 218 RFFMQHLPEN---LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVET----NM-------------- 276 (378)
T ss_pred HHHHHhCCcc---cCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----cC--------------
Confidence 3455566642 3469999999999999999998 47899999999999887632210 00
Q ss_pred CcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--eccC---ChhhHHHHHHHHHHhccCCc
Q 015966 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFID---TAHNIVEYIEIISRILKDGG 328 (397)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFID---ta~Ni~~yi~~I~~~LKPGG 328 (397)
++ ...++.+..+|+.+.. ..++||+|+++ |... +..-..+.|+.++++|||||
T Consensus 277 -----------~~-------~~~~v~~~~~D~l~~~----~~~~fDlIlsNPPfh~~~~~~~~ia~~l~~~a~~~LkpGG 334 (378)
T PRK15001 277 -----------PE-------ALDRCEFMINNALSGV----EPFRFNAVLCNPPFHQQHALTDNVAWEMFHHARRCLKING 334 (378)
T ss_pred -----------cc-------cCceEEEEEccccccC----CCCCEEEEEECcCcccCccCCHHHHHHHHHHHHHhcccCC
Confidence 00 0012677778875422 13589999996 4321 22334688999999999999
Q ss_pred EEEEec
Q 015966 329 VWINLG 334 (397)
Q Consensus 329 ~wIN~G 334 (397)
.++-++
T Consensus 335 ~L~iV~ 340 (378)
T PRK15001 335 ELYIVA 340 (378)
T ss_pred EEEEEE
Confidence 988654
|
|
| >PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1e-08 Score=96.33 Aligned_cols=112 Identities=15% Similarity=0.062 Sum_probs=78.9
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHHhhhhcccccCcccccccc
Q 015966 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWI 246 (397)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi 246 (397)
..+.+...+.+.+.. .++.+|||+|||+|.++..||++. -.|+|+|++..|+..++-.+...
T Consensus 60 ~~p~~~~~~~~~l~~---~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~------------ 124 (212)
T PRK13942 60 SAIHMVAIMCELLDL---KEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKL------------ 124 (212)
T ss_pred CcHHHHHHHHHHcCC---CCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc------------
Confidence 344555556555432 257799999999999999998873 58999999999998776433210
Q ss_pred ccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccC
Q 015966 247 HSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKD 326 (397)
Q Consensus 247 ~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKP 326 (397)
. ..++.++.||+.+.+. ..+.||+|+...... ++.+.+.+.|||
T Consensus 125 --------------g-------------~~~v~~~~gd~~~~~~---~~~~fD~I~~~~~~~------~~~~~l~~~Lkp 168 (212)
T PRK13942 125 --------------G-------------YDNVEVIVGDGTLGYE---ENAPYDRIYVTAAGP------DIPKPLIEQLKD 168 (212)
T ss_pred --------------C-------------CCCeEEEECCcccCCC---cCCCcCEEEECCCcc------cchHHHHHhhCC
Confidence 0 0136789999876543 247899998654332 334577889999
Q ss_pred CcEEEE
Q 015966 327 GGVWIN 332 (397)
Q Consensus 327 GG~wIN 332 (397)
||++|-
T Consensus 169 gG~lvi 174 (212)
T PRK13942 169 GGIMVI 174 (212)
T ss_pred CcEEEE
Confidence 999984
|
|
| >PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=3.6e-08 Score=102.07 Aligned_cols=126 Identities=17% Similarity=0.190 Sum_probs=86.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++..||++ +..|+|+|+|..|+..++..... + .
T Consensus 251 ~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~----~----------------------g----- 299 (423)
T PRK14966 251 ENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAAD----L----------------------G----- 299 (423)
T ss_pred CCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----c----------------------C-----
Confidence 3458999999999999999975 57899999999999887632210 0 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-ccCCh------------------------hhHHHHHHHHH
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA------------------------HNIVEYIEIIS 321 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta------------------------~Ni~~yi~~I~ 321 (397)
.++.++.+|+.+... + ..++||+|+++= |+.+. .-+.+.++.+.
T Consensus 300 ---------~rV~fi~gDl~e~~l-~-~~~~FDLIVSNPPYI~~~e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~ 368 (423)
T PRK14966 300 ---------ARVEFAHGSWFDTDM-P-SEGKWDIIVSNPPYIENGDKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAP 368 (423)
T ss_pred ---------CcEEEEEcchhcccc-c-cCCCccEEEECCCCCCcchhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHH
Confidence 126778889865321 1 135799999862 33221 11235566667
Q ss_pred HhccCCcEEEE-ecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 322 RILKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 322 ~~LKPGG~wIN-~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
+.|||||.++- +|. --.+++++++++.||..++..
T Consensus 369 ~~LkpgG~lilEiG~------------------~Q~e~V~~ll~~~Gf~~v~v~ 404 (423)
T PRK14966 369 DRLAEGGFLLLEHGF------------------DQGAAVRGVLAENGFSGVETL 404 (423)
T ss_pred HhcCCCcEEEEEECc------------------cHHHHHHHHHHHCCCcEEEEE
Confidence 89999999773 111 135789999999999866543
|
|
| >PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.92 E-value=1.4e-08 Score=102.53 Aligned_cols=101 Identities=18% Similarity=0.153 Sum_probs=73.6
Q ss_pred CCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 190 PPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
..+|||+|||+|.++..+++++ ..|+++|+|..|+..|+.-+.. + .+
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~----n----------------------~l----- 245 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAA----N----------------------GL----- 245 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----c----------------------CC-----
Confidence 4589999999999999999985 4899999999999887632211 0 00
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-c---cCC-hhhHHHHHHHHHHhccCCcEEEEecC
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-F---IDT-AHNIVEYIEIISRILKDGGVWINLGP 335 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-F---IDt-a~Ni~~yi~~I~~~LKPGG~wIN~GP 335 (397)
...+..+|+.+. ..+.||+|+++. | +++ .....+.|+.+.++|||||.++-+++
T Consensus 246 ---------~~~~~~~D~~~~-----~~~~fDlIvsNPPFH~g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 246 ---------EGEVFASNVFSD-----IKGRFDMIISNPPFHDGIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred ---------CCEEEEcccccc-----cCCCccEEEECCCccCCccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 023455665442 147899999974 2 333 34567899999999999999985443
|
|
| >PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.91 E-value=1.8e-08 Score=93.69 Aligned_cols=110 Identities=17% Similarity=0.151 Sum_probs=76.6
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
+.+...+.+.+.. .++.+||++|||+|.++..|++++..|+++|.|..|+..++-.+...
T Consensus 64 p~~~~~l~~~l~~---~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~----------------- 123 (212)
T PRK00312 64 PYMVARMTELLEL---KPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQL----------------- 123 (212)
T ss_pred HHHHHHHHHhcCC---CCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHC-----------------
Confidence 3444555554432 25689999999999999999999779999999999987766332110
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
.+ .++.+..+|+.+... ..+.||+|+....+ ..+.+.+.+.|||||++|
T Consensus 124 ---------~~-------------~~v~~~~~d~~~~~~---~~~~fD~I~~~~~~------~~~~~~l~~~L~~gG~lv 172 (212)
T PRK00312 124 ---------GL-------------HNVSVRHGDGWKGWP---AYAPFDRILVTAAA------PEIPRALLEQLKEGGILV 172 (212)
T ss_pred ---------CC-------------CceEEEECCcccCCC---cCCCcCEEEEccCc------hhhhHHHHHhcCCCcEEE
Confidence 00 126778888765332 24789999865422 233567789999999998
Q ss_pred E
Q 015966 332 N 332 (397)
Q Consensus 332 N 332 (397)
-
T Consensus 173 ~ 173 (212)
T PRK00312 173 A 173 (212)
T ss_pred E
Confidence 4
|
|
| >PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.5e-08 Score=97.34 Aligned_cols=122 Identities=12% Similarity=0.175 Sum_probs=85.1
Q ss_pred CeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 191 PACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
.+|||+|||+|.++..||++ +..|+|+|+|..|+..|+..+...
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~---------------------------------- 180 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERH---------------------------------- 180 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh----------------------------------
Confidence 68999999999999999987 568999999999998877322100
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-ccCC------------------------hhhHHHHHHHHHHh
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDT------------------------AHNIVEYIEIISRI 323 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-FIDt------------------------a~Ni~~yi~~I~~~ 323 (397)
....++.++.+|+.+... .++||+|++.= |+.. ..-....++.+.++
T Consensus 181 ----~l~~~i~~~~~D~~~~l~----~~~fDlIvsNPPyi~~~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~ 252 (307)
T PRK11805 181 ----GLEDRVTLIESDLFAALP----GRRYDLIVSNPPYVDAEDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDY 252 (307)
T ss_pred ----CCCCcEEEEECchhhhCC----CCCccEEEECCCCCCccchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHh
Confidence 001236788999866322 35799999861 1110 11234678889999
Q ss_pred ccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 324 LKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 324 LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
|||||+++- + +..+.+++.+++.+.||....
T Consensus 253 L~pgG~l~~--------E----------~g~~~~~~~~~~~~~~~~~~~ 283 (307)
T PRK11805 253 LTEDGVLVV--------E----------VGNSRVHLEEAYPDVPFTWLE 283 (307)
T ss_pred cCCCCEEEE--------E----------ECcCHHHHHHHHhhCCCEEEE
Confidence 999999883 0 112345688888888886654
|
|
| >PHA03412 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.1e-08 Score=98.75 Aligned_cols=141 Identities=18% Similarity=0.160 Sum_probs=93.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc-----CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccc
Q 015966 189 SPPACLVPGAGLGRLALEISHL-----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVS 263 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-----Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~ 263 (397)
.+.+|||||||+|.++..++++ ...|+|+|++..|+..|+..+
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~-------------------------------- 96 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIV-------------------------------- 96 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhc--------------------------------
Confidence 3579999999999999999874 358999999999998776211
Q ss_pred cCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--eccCChh---------h-HHHHHHHHHHhccCCcEEE
Q 015966 264 IPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTAH---------N-IVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 264 iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta~---------N-i~~yi~~I~~~LKPGG~wI 331 (397)
| ++.++.+||.... ..++||+||++ |+..... . ....++.+.++|+||+..+
T Consensus 97 -~-----------~~~~~~~D~~~~~----~~~~FDlIIsNPPY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~~IL 160 (241)
T PHA03412 97 -P-----------EATWINADALTTE----FDTLFDMAISNPPFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGTFII 160 (241)
T ss_pred -c-----------CCEEEEcchhccc----ccCCccEEEECCCCCCccccccCCcccccHHHHHHHHHHHHHcCCCEEEe
Confidence 0 1456778886532 14689999998 6622211 2 3457888889888887644
Q ss_pred --EecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeecCCCCC
Q 015966 332 --NLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYT 381 (397)
Q Consensus 332 --N~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~~~Y~ 381 (397)
++.|.-|.+...+.. .-..+-.++++..++-|..+..-=.|+++|-
T Consensus 161 P~~~~~~~y~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (241)
T PHA03412 161 PQMSANFRYSGTHYFRQ----DESTTSSKCKKFLDETGLEMNPGCGIDTGYY 208 (241)
T ss_pred CcccccCcccCccceee----ccCcccHHHHHHHHhcCeeecCCCCccceee
Confidence 344444432211100 0125667888888898987765546666654
|
|
| >PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.6e-09 Score=102.29 Aligned_cols=133 Identities=23% Similarity=0.286 Sum_probs=91.7
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCcccccccccccc
Q 015966 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (397)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~S 250 (397)
.-.++.|+++.. ++.+|||.|||+|-|+.--+++|. .|.|+|+++..+..|+.... .|
T Consensus 149 ~lcl~~l~~~~~-----~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~----~N------------ 207 (295)
T PF06325_consen 149 RLCLELLEKYVK-----PGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAE----LN------------ 207 (295)
T ss_dssp HHHHHHHHHHSS-----TTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHH----HT------------
T ss_pred HHHHHHHHHhcc-----CCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHH----Hc------------
Confidence 346777877642 567999999999999999999998 59999999999887763211 01
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEE
Q 015966 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVW 330 (397)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~w 330 (397)
.+. .++... ...+. ..++||+|+.+-.-+. +...+..+.++|||||++
T Consensus 208 ----------~~~------------~~~~v~--~~~~~-----~~~~~dlvvANI~~~v---L~~l~~~~~~~l~~~G~l 255 (295)
T PF06325_consen 208 ----------GVE------------DRIEVS--LSEDL-----VEGKFDLVVANILADV---LLELAPDIASLLKPGGYL 255 (295)
T ss_dssp ----------T-T------------TCEEES--CTSCT-----CCS-EEEEEEES-HHH---HHHHHHHCHHHEEEEEEE
T ss_pred ----------CCC------------eeEEEE--Eeccc-----ccccCCEEEECCCHHH---HHHHHHHHHHhhCCCCEE
Confidence 000 112111 11111 1378999998766443 668899999999999999
Q ss_pred EEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 331 INLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 331 IN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
|--|= +.=-.+++++.+++ ||++++..
T Consensus 256 IlSGI----------------l~~~~~~v~~a~~~-g~~~~~~~ 282 (295)
T PF06325_consen 256 ILSGI----------------LEEQEDEVIEAYKQ-GFELVEER 282 (295)
T ss_dssp EEEEE----------------EGGGHHHHHHHHHT-TEEEEEEE
T ss_pred EEccc----------------cHHHHHHHHHHHHC-CCEEEEEE
Confidence 96442 22345788888987 99998754
|
Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A .... |
| >PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins | Back alignment and domain information |
|---|
Probab=98.88 E-value=5e-08 Score=91.43 Aligned_cols=138 Identities=18% Similarity=0.184 Sum_probs=91.6
Q ss_pred CCCeEEEecCCCChhHHHHHH-cCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISH-LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~-~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.||||+|||.|.|...|.+ ++..++|+|++...+..+-
T Consensus 13 pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv--------------------------------------- 53 (193)
T PF07021_consen 13 PGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACV--------------------------------------- 53 (193)
T ss_pred CCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHH---------------------------------------
Confidence 577999999999999888866 7999999999998875321
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhc----
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADL---- 343 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~---- 343 (397)
..+++.++||+.+-.. .+.+++||.|+-.--|....+....|+++ |+-|..-|-.=|.+=||...
T Consensus 54 -------~rGv~Viq~Dld~gL~-~f~d~sFD~VIlsqtLQ~~~~P~~vL~Em---lRVgr~~IVsFPNFg~W~~R~~l~ 122 (193)
T PF07021_consen 54 -------ARGVSVIQGDLDEGLA-DFPDQSFDYVILSQTLQAVRRPDEVLEEM---LRVGRRAIVSFPNFGHWRNRLQLL 122 (193)
T ss_pred -------HcCCCEEECCHHHhHh-hCCCCCccEEehHhHHHhHhHHHHHHHHH---HHhcCeEEEEecChHHHHHHHHHH
Confidence 1246788899755211 13478999998755555555555566655 44455555211222233221
Q ss_pred -cCC-------------CCCccccCCHHHHHHHHHhCCCEEEEEeecC
Q 015966 344 -YGQ-------------EDEMSIELSLEDVKRVALHYGFEFEKEKTIE 377 (397)
Q Consensus 344 -~g~-------------~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~ 377 (397)
.|. .|+ -.-+|..|++++..+.|++|++.....
T Consensus 123 ~~GrmPvt~~lPy~WYdTPN-ih~~Ti~DFe~lc~~~~i~I~~~~~~~ 169 (193)
T PF07021_consen 123 LRGRMPVTKALPYEWYDTPN-IHLCTIKDFEDLCRELGIRIEERVFLD 169 (193)
T ss_pred hcCCCCCCCCCCCcccCCCC-cccccHHHHHHHHHHCCCEEEEEEEEc
Confidence 010 111 124699999999999999999876443
|
Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells []. |
| >COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.8e-08 Score=98.75 Aligned_cols=137 Identities=28% Similarity=0.304 Sum_probs=95.9
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHHhhhhcccccCcccccccccccc
Q 015966 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (397)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~S 250 (397)
.-.+++|+++.. ++.+|||+|||+|-|+.-.+++|.. |.|+|+.+..+.+|+- |.. . |
T Consensus 150 ~lcL~~Le~~~~-----~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~e--Na~-~-N------------ 208 (300)
T COG2264 150 SLCLEALEKLLK-----KGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARE--NAR-L-N------------ 208 (300)
T ss_pred HHHHHHHHHhhc-----CCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHH--HHH-H-c------------
Confidence 346677777653 6789999999999999999999996 9999999999988872 211 0 1
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEE
Q 015966 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVW 330 (397)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~w 330 (397)
.+. .. ......+-.+.- ..+.||+||.+-. |+=+......|+++|||||++
T Consensus 209 ----------~v~--~~----------~~~~~~~~~~~~----~~~~~DvIVANIL---A~vl~~La~~~~~~lkpgg~l 259 (300)
T COG2264 209 ----------GVE--LL----------VQAKGFLLLEVP----ENGPFDVIVANIL---AEVLVELAPDIKRLLKPGGRL 259 (300)
T ss_pred ----------CCc--hh----------hhcccccchhhc----ccCcccEEEehhh---HHHHHHHHHHHHHHcCCCceE
Confidence 000 00 000111111111 1368999998863 444778999999999999999
Q ss_pred EEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 331 INLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 331 IN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
|--|=| .=-.+.+.+.+++.||++++..
T Consensus 260 IlSGIl----------------~~q~~~V~~a~~~~gf~v~~~~ 287 (300)
T COG2264 260 ILSGIL----------------EDQAESVAEAYEQAGFEVVEVL 287 (300)
T ss_pred EEEeeh----------------HhHHHHHHHHHHhCCCeEeEEE
Confidence 975521 1126788899999999998854
|
|
| >PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes | Back alignment and domain information |
|---|
Probab=98.85 E-value=5.9e-08 Score=91.75 Aligned_cols=166 Identities=20% Similarity=0.286 Sum_probs=105.7
Q ss_pred hHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHH-HHHHhhhhcccccCccc
Q 015966 165 TERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMM-ICSSFILNHTETAGEWN 241 (397)
Q Consensus 165 ~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML-~~s~fiLn~~~~~~~~~ 241 (397)
.||+. .||++.|++.++... .+||++|||||-.+..+|+. ...-|--|.....+ .+..++...
T Consensus 7 aeRNk--~pIl~vL~~~l~~~~----~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~-------- 72 (204)
T PF06080_consen 7 AERNK--DPILEVLKQYLPDSG----TRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEA-------- 72 (204)
T ss_pred hhhCH--hHHHHHHHHHhCccC----ceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhc--------
Confidence 45553 599999999998532 27999999999999999987 44556777777664 222222210
Q ss_pred cccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEeccccccc-CCCCCCCCccEEEEeec--cCChhhHHHHHH
Q 015966 242 IYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVY-SDPSQVGAWDAVVTCFF--IDTAHNIVEYIE 318 (397)
Q Consensus 242 IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely-~~~~~~~~fD~VvT~FF--IDta~Ni~~yi~ 318 (397)
...+..+++. +.+...+ -.+- ..+...+.||+|+|... |-.-......|+
T Consensus 73 ------------~~~Nv~~P~~--------------lDv~~~~-w~~~~~~~~~~~~~D~i~~~N~lHI~p~~~~~~lf~ 125 (204)
T PF06080_consen 73 ------------GLPNVRPPLA--------------LDVSAPP-WPWELPAPLSPESFDAIFCINMLHISPWSAVEGLFA 125 (204)
T ss_pred ------------CCcccCCCeE--------------eecCCCC-CccccccccCCCCcceeeehhHHHhcCHHHHHHHHH
Confidence 0011111221 1111110 0000 00112478999998854 566667889999
Q ss_pred HHHHhccCCcEEEEecCCcchhhhc------cC-----CCCCcccc-CCHHHHHHHHHhCCCEEEEE
Q 015966 319 IISRILKDGGVWINLGPLLYHFADL------YG-----QEDEMSIE-LSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 319 ~I~~~LKPGG~wIN~GPLlYh~~d~------~g-----~~~~~~ie-LS~EEl~~ll~~~GFeii~e 373 (397)
.+.++|||||+++-.||..+.-.-. ++ ..| .+. -..|+|.+++.+.|+++++.
T Consensus 126 ~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp--~~GiRD~e~v~~lA~~~GL~l~~~ 190 (204)
T PF06080_consen 126 GAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDP--EWGIRDIEDVEALAAAHGLELEED 190 (204)
T ss_pred HHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCC--CcCccCHHHHHHHHHHCCCccCcc
Confidence 9999999999999999987742110 10 112 233 37899999999999998764
|
The function of this family is unknown. |
| >PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional | Back alignment and domain information |
|---|
Probab=98.84 E-value=1.3e-08 Score=95.67 Aligned_cols=94 Identities=15% Similarity=0.123 Sum_probs=66.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|..+..|++++ -.|+|+|+|. |. + +|
T Consensus 51 ~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-~~-------~-------------------------------~~ 91 (209)
T PRK11188 51 PGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-MD-------P-------------------------------IV 91 (209)
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-cc-------C-------------------------------CC
Confidence 56799999999999999998873 4799999998 41 0 01
Q ss_pred CCCCCCCCCCCcceeEecccccccC-----CCCCCCCccEEEEee---ccC-Chhh-------HHHHHHHHHHhccCCcE
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYS-----DPSQVGAWDAVVTCF---FID-TAHN-------IVEYIEIISRILKDGGV 329 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~-----~~~~~~~fD~VvT~F---FID-ta~N-------i~~yi~~I~~~LKPGG~ 329 (397)
++.+++||+.+... .+...+.||+|++.. +.. ...+ +...++.++++|||||.
T Consensus 92 -----------~v~~i~~D~~~~~~~~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~ 160 (209)
T PRK11188 92 -----------GVDFLQGDFRDELVLKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGS 160 (209)
T ss_pred -----------CcEEEecCCCChHHHHHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCE
Confidence 15678888876310 011247899999854 221 1111 24689999999999999
Q ss_pred EEE
Q 015966 330 WIN 332 (397)
Q Consensus 330 wIN 332 (397)
++-
T Consensus 161 ~vi 163 (209)
T PRK11188 161 FVV 163 (209)
T ss_pred EEE
Confidence 995
|
|
| >TIGR00536 hemK_fam HemK family putative methylases | Back alignment and domain information |
|---|
Probab=98.81 E-value=5.5e-08 Score=95.06 Aligned_cols=123 Identities=15% Similarity=0.159 Sum_probs=84.9
Q ss_pred CeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 191 PACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
.+|||+|||+|.++..||+.+ ..|+|+|+|..|+..|+..... +
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~----~------------------------------ 161 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEK----N------------------------------ 161 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH----c------------------------------
Confidence 689999999999999999874 5899999999999887732210 0
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-ccCC------------------------hhhHHHHHHHHHHh
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDT------------------------AHNIVEYIEIISRI 323 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-FIDt------------------------a~Ni~~yi~~I~~~ 323 (397)
....++.++.+|+.+... .++||+||++= |+.+ ...+..+++.+.++
T Consensus 162 ----~~~~~v~~~~~d~~~~~~----~~~fDlIvsNPPyi~~~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~ 233 (284)
T TIGR00536 162 ----QLEHRVEFIQSNLFEPLA----GQKIDIIVSNPPYIDEEDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDY 233 (284)
T ss_pred ----CCCCcEEEEECchhccCc----CCCccEEEECCCCCCcchhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHh
Confidence 001236788899876321 24799999861 2221 12355788999999
Q ss_pred ccCCcEEEE-ecCCcchhhhccCCCCCccccCCHHHHHHHHH-hCCCEEEEE
Q 015966 324 LKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVAL-HYGFEFEKE 373 (397)
Q Consensus 324 LKPGG~wIN-~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~-~~GFeii~e 373 (397)
|||||+++- +|+ --.+.+.+++. +.||..++.
T Consensus 234 L~~gG~l~~e~g~------------------~q~~~~~~~~~~~~~~~~~~~ 267 (284)
T TIGR00536 234 LKPNGFLVCEIGN------------------WQQKSLKELLRIKFTWYDVEN 267 (284)
T ss_pred ccCCCEEEEEECc------------------cHHHHHHHHHHhcCCCceeEE
Confidence 999999873 221 12356777777 468865543
|
The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain. |
| >KOG2361 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.81 E-value=2.5e-08 Score=96.34 Aligned_cols=159 Identities=19% Similarity=0.293 Sum_probs=98.0
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccc
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 248 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~----Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~ 248 (397)
.++.+..++++.... ...+||++|||.|...+.|.+- +..|.+.|+|+..+..-+ ++... ..-..++|+
T Consensus 56 wL~~Efpel~~~~~~-~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk---~~~~~-~e~~~~afv-- 128 (264)
T KOG2361|consen 56 WLLREFPELLPVDEK-SAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVK---KSSGY-DESRVEAFV-- 128 (264)
T ss_pred HHHHhhHHhhCcccc-ChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHH---hcccc-chhhhcccc--
Confidence 355555555553321 3338999999999999999775 578999999998875332 11110 011111111
Q ss_pred ccCCCCcccCccccccCCCCCCCCCCCCcceeEeccccc--ccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhc
Q 015966 249 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVE--VYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRIL 324 (397)
Q Consensus 249 ~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~e--ly~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~L 324 (397)
-|++. +-. +-..+++|+|+..|-|. ..+.....|+.++++|
T Consensus 129 ----------------------------------~Dlt~~~~~~-~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~ll 173 (264)
T KOG2361|consen 129 ----------------------------------WDLTSPSLKE-PPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLL 173 (264)
T ss_pred ----------------------------------eeccchhccC-CCCcCccceEEEEEEEeccChHHHHHHHHHHHHHh
Confidence 12221 111 22358999998777543 2345788999999999
Q ss_pred cCCcEEEE--ecC--C---cchhhhc-----c-CCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 325 KDGGVWIN--LGP--L---LYHFADL-----Y-GQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 325 KPGG~wIN--~GP--L---lYh~~d~-----~-g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
||||.++- +|- + -++-... + .++....+-++.|||..+++++||..+..
T Consensus 174 KPGG~llfrDYg~~DlaqlRF~~~~~i~~nfYVRgDGT~~YfF~~eeL~~~f~~agf~~~~~ 235 (264)
T KOG2361|consen 174 KPGGSLLFRDYGRYDLAQLRFKKGQCISENFYVRGDGTRAYFFTEEELDELFTKAGFEEVQL 235 (264)
T ss_pred CCCcEEEEeecccchHHHHhccCCceeecceEEccCCceeeeccHHHHHHHHHhcccchhcc
Confidence 99999993 221 1 1110000 0 01112357899999999999999987763
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.79 E-value=8.1e-08 Score=101.55 Aligned_cols=123 Identities=18% Similarity=0.183 Sum_probs=85.6
Q ss_pred CCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 190 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
..+|||+|||+|.++..+|+. +..|+|+|+|..|+..|+..... +
T Consensus 139 ~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~----~----------------------------- 185 (506)
T PRK01544 139 FLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIK----Y----------------------------- 185 (506)
T ss_pred CCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHH----c-----------------------------
Confidence 468999999999999999875 67899999999999887732210 0
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-ccCCh-------------------------hhHHHHHHHHH
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA-------------------------HNIVEYIEIIS 321 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta-------------------------~Ni~~yi~~I~ 321 (397)
....++.++.+|+.+... .++||+|+++- |+.+. .-+...++.+.
T Consensus 186 -----~l~~~v~~~~~D~~~~~~----~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~ 256 (506)
T PRK01544 186 -----EVTDRIQIIHSNWFENIE----KQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAK 256 (506)
T ss_pred -----CCccceeeeecchhhhCc----CCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHH
Confidence 001236778889766322 36899999852 22211 12334677888
Q ss_pred HhccCCcEEEE-ecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 322 RILKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 322 ~~LKPGG~wIN-~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
++|||||.++- +| .-..+.+.+++.+.||..++
T Consensus 257 ~~L~~gG~l~lEig------------------~~q~~~v~~~~~~~g~~~~~ 290 (506)
T PRK01544 257 QFLKPNGKIILEIG------------------FKQEEAVTQIFLDHGYNIES 290 (506)
T ss_pred HhccCCCEEEEEEC------------------CchHHHHHHHHHhcCCCceE
Confidence 99999999873 11 11356788899999998655
|
|
| >COG4106 Tam Trans-aconitate methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.78 E-value=1.2e-08 Score=97.43 Aligned_cols=159 Identities=18% Similarity=0.176 Sum_probs=105.0
Q ss_pred cccc----cChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhh
Q 015966 158 DWAA----EGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFIL 231 (397)
Q Consensus 158 DWS~----eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiL 231 (397)
+|+. ..+.||.. |..+.|. ++|.. ...+|.|+|||+|..+..|+++ +..++|+|-|..||..|+-
T Consensus 2 ~W~p~~Yl~F~~eRtR---Pa~dLla-~Vp~~---~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~-- 72 (257)
T COG4106 2 DWNPDQYLQFEDERTR---PARDLLA-RVPLE---RPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQ-- 72 (257)
T ss_pred CCCHHHHHHHHHhccC---cHHHHHh-hCCcc---ccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHH--
Confidence 5665 45677764 4444443 34533 5679999999999999999999 7899999999999986651
Q ss_pred hcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChh
Q 015966 232 NHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH 311 (397)
Q Consensus 232 n~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~ 311 (397)
..|| .+|..||..++.. +...|+++.+--+.=.+
T Consensus 73 -------------------------------rlp~-----------~~f~~aDl~~w~p----~~~~dllfaNAvlqWlp 106 (257)
T COG4106 73 -------------------------------RLPD-----------ATFEEADLRTWKP----EQPTDLLFANAVLQWLP 106 (257)
T ss_pred -------------------------------hCCC-----------CceecccHhhcCC----CCccchhhhhhhhhhcc
Confidence 2233 5778899998753 46789998774322223
Q ss_pred hHHHHHHHHHHhccCCcEEEEecCCc----ch-----------hhhccCCCC-CccccCCHHHHHHHHHhCCCEEE
Q 015966 312 NIVEYIEIISRILKDGGVWINLGPLL----YH-----------FADLYGQED-EMSIELSLEDVKRVALHYGFEFE 371 (397)
Q Consensus 312 Ni~~yi~~I~~~LKPGG~wIN~GPLl----Yh-----------~~d~~g~~~-~~~ieLS~EEl~~ll~~~GFeii 371 (397)
+-.+.|......|.|||++----|-- .| |+...++.+ ...--+|...+-+++...+=++.
T Consensus 107 dH~~ll~rL~~~L~Pgg~LAVQmPdN~depsH~~mr~~A~~~p~~~~l~~~~~~r~~v~s~a~Yy~lLa~~~~rvD 182 (257)
T COG4106 107 DHPELLPRLVSQLAPGGVLAVQMPDNLDEPSHRLMRETADEAPFAQELGGRGLTRAPLPSPAAYYELLAPLACRVD 182 (257)
T ss_pred ccHHHHHHHHHhhCCCceEEEECCCccCchhHHHHHHHHhcCchhhhhCccccccCCCCCHHHHHHHhCcccceee
Confidence 34578999999999999998322211 11 111111111 01234688888888877655544
|
|
| >TIGR00438 rrmJ cell division protein FtsJ | Back alignment and domain information |
|---|
Probab=98.76 E-value=3.5e-08 Score=90.23 Aligned_cols=94 Identities=17% Similarity=0.124 Sum_probs=63.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC---eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF---ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf---~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|.++..++++.. .|+|+|+|..| . +
T Consensus 32 ~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~----~--~---------------------------------- 71 (188)
T TIGR00438 32 PGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK----P--I---------------------------------- 71 (188)
T ss_pred CCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc----c--C----------------------------------
Confidence 678999999999999999988753 59999999854 0 0
Q ss_pred CCCCCCCCCCCcceeEecccccccC-----CCCCCCCccEEEEee--------ccCCh---hhHHHHHHHHHHhccCCcE
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYS-----DPSQVGAWDAVVTCF--------FIDTA---HNIVEYIEIISRILKDGGV 329 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~-----~~~~~~~fD~VvT~F--------FIDta---~Ni~~yi~~I~~~LKPGG~ 329 (397)
.++.++.+|+.+... .....+.||+|++.. .++.. .++...++.++++|||||+
T Consensus 72 ----------~~i~~~~~d~~~~~~~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 141 (188)
T TIGR00438 72 ----------ENVDFIRGDFTDEEVLNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGN 141 (188)
T ss_pred ----------CCceEEEeeCCChhHHHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCE
Confidence 013344555543210 001246799998632 12221 2346789999999999999
Q ss_pred EEE
Q 015966 330 WIN 332 (397)
Q Consensus 330 wIN 332 (397)
++-
T Consensus 142 lvi 144 (188)
T TIGR00438 142 FVV 144 (188)
T ss_pred EEE
Confidence 995
|
|
| >PRK00811 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.3e-08 Score=95.56 Aligned_cols=108 Identities=18% Similarity=0.190 Sum_probs=76.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+||++|||.|.++.+++++ +. .|+++|++..|+..|+--+.. .+ . . .
T Consensus 76 ~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~------------~~---~---------~--~-- 127 (283)
T PRK00811 76 NPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPE------------IA---G---------G--A-- 127 (283)
T ss_pred CCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHH------------hc---c---------c--c--
Confidence 4569999999999999999987 54 799999999999877622210 00 0 0 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhH--HHHHHHHHHhccCCcEEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNI--VEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni--~~yi~~I~~~LKPGG~wIN 332 (397)
....++.++.+|..++.. ...++||+|+.-.+-. .+..+ .++++.++++|||||+++.
T Consensus 128 ------~~d~rv~v~~~Da~~~l~--~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~ 189 (283)
T PRK00811 128 ------YDDPRVELVIGDGIKFVA--ETENSFDVIIVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVA 189 (283)
T ss_pred ------ccCCceEEEECchHHHHh--hCCCcccEEEECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 001247889999887532 2357899999754321 11122 5789999999999999995
|
|
| >KOG4300 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.75 E-value=5.7e-08 Score=92.25 Aligned_cols=104 Identities=16% Similarity=0.120 Sum_probs=77.3
Q ss_pred CCCeEEEecCCCChhHHHHH-HcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEIS-HLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA-~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
.+..||++|||||+.--..- +.|-.|+++|-++.|-.++.. .+.++ ++..+
T Consensus 76 ~K~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~k---s~~E~----------------------k~~~~--- 127 (252)
T KOG4300|consen 76 GKGDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADK---SAAEK----------------------KPLQV--- 127 (252)
T ss_pred CccceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHH---HHhhc----------------------cCcce---
Confidence 46678999999999854443 468999999999999876652 11111 11110
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
..|+.++-.++-.. .++++|+||+.|.|-..++..+.++.+.++|||||++|-
T Consensus 128 ----------~~fvva~ge~l~~l--~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iif 180 (252)
T KOG4300|consen 128 ----------ERFVVADGENLPQL--ADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIF 180 (252)
T ss_pred ----------EEEEeechhcCccc--ccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEE
Confidence 23666665555322 368999999999998888999999999999999999994
|
|
| >PLN02232 ubiquinone biosynthesis methyltransferase | Back alignment and domain information |
|---|
Probab=98.74 E-value=4.8e-08 Score=87.82 Aligned_cols=95 Identities=22% Similarity=0.284 Sum_probs=64.6
Q ss_pred cceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE--ecCC-------cchhh-hc---
Q 015966 277 GFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN--LGPL-------LYHFA-DL--- 343 (397)
Q Consensus 277 ~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN--~GPL-------lYh~~-d~--- 343 (397)
++.++.||+.++ |..+++||+|++.|-+....|..+.+++++++|||||.++- +++. ++.|. ..
T Consensus 27 ~i~~~~~d~~~l---p~~~~~fD~v~~~~~l~~~~d~~~~l~ei~rvLkpGG~l~i~d~~~~~~~~~~~~~~~~~~~~~~ 103 (160)
T PLN02232 27 CIEWIEGDAIDL---PFDDCEFDAVTMGYGLRNVVDRLRAMKEMYRVLKPGSRVSILDFNKSNQSVTTFMQGWMIDNVVV 103 (160)
T ss_pred ceEEEEechhhC---CCCCCCeeEEEecchhhcCCCHHHHHHHHHHHcCcCeEEEEEECCCCChHHHHHHHHHHccchHh
Confidence 378899998876 23467999999887666556788999999999999999973 2211 00000 00
Q ss_pred -----cCCCCC-----ccc--cCCHHHHHHHHHhCCCEEEEEe
Q 015966 344 -----YGQEDE-----MSI--ELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 344 -----~g~~~~-----~~i--eLS~EEl~~ll~~~GFeii~e~ 374 (397)
.+.... .++ -++.+|+.++++++||+.+..+
T Consensus 104 ~~~~~~~~~~~y~yl~~si~~f~~~~el~~ll~~aGF~~~~~~ 146 (160)
T PLN02232 104 PVATVYDLAKEYEYLKYSINGYLTGEELETLALEAGFSSACHY 146 (160)
T ss_pred hhhHHhCChHHHHhHHHHHHHCcCHHHHHHHHHHcCCCcceEE
Confidence 000000 011 2699999999999999977643
|
|
| >PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.2e-07 Score=97.38 Aligned_cols=144 Identities=14% Similarity=0.105 Sum_probs=93.9
Q ss_pred CchhhHHHHHHHHHHhcccccChhHH----------hhchHHHHH--HHHhhCCCCCCCCCCeEEEecCCCChhHHHHHH
Q 015966 142 LADVDKVRCIIRNIVRDWAAEGKTER----------DQCYKPILE--ELDALFPNRSKESPPACLVPGAGLGRLALEISH 209 (397)
Q Consensus 142 ~~d~dkv~stL~q~~RDWS~eG~~ER----------~~~y~pIl~--~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~ 209 (397)
+..+..++.+|..++--|-.+-..++ +..| +++ .+.+.+.. ..+..|||+|||+|+.+..+|+
T Consensus 68 p~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~d~~~~~~~~~~---~~~p~vLEIGcGsG~~ll~lA~ 142 (390)
T PRK14121 68 PSKVGILKKALKIFSELFCADIISHNLAENSKKLSLKKPY--ILDIDNFLDFISK---NQEKILIEIGFGSGRHLLYQAK 142 (390)
T ss_pred ccchHHHHHHHHHHHHHhhccccccccccccccccccccc--cCCHHHHHHHhcC---CCCCeEEEEcCcccHHHHHHHH
Confidence 45567888888888877743211111 1111 222 23333322 2466999999999999999999
Q ss_pred c--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEeccccc
Q 015966 210 L--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVE 287 (397)
Q Consensus 210 ~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~e 287 (397)
+ +..+.|+|++..|+..+.-- +... + -.++.++.+|..+
T Consensus 143 ~~P~~~~iGIEI~~~~i~~a~~k---a~~~-----------------------g-------------L~NV~~i~~DA~~ 183 (390)
T PRK14121 143 NNPNKLFIGIEIHTPSIEQVLKQ---IELL-----------------------N-------------LKNLLIINYDARL 183 (390)
T ss_pred hCCCCCEEEEECCHHHHHHHHHH---HHHc-----------------------C-------------CCcEEEEECCHHH
Confidence 8 57899999999998765411 1100 0 0237788999866
Q ss_pred ccCCCCCCCCccEEEEeeccCC-h--h--h--HHHHHHHHHHhccCCcEEE
Q 015966 288 VYSDPSQVGAWDAVVTCFFIDT-A--H--N--IVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 288 ly~~~~~~~~fD~VvT~FFIDt-a--~--N--i~~yi~~I~~~LKPGG~wI 331 (397)
+.. ...++++|.|+..| -|. . . . ..++++.++++|||||.|.
T Consensus 184 ll~-~~~~~s~D~I~lnF-PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~ 232 (390)
T PRK14121 184 LLE-LLPSNSVEKIFVHF-PVPWDKKPHRRVISEDFLNEALRVLKPGGTLE 232 (390)
T ss_pred hhh-hCCCCceeEEEEeC-CCCccccchhhccHHHHHHHHHHHcCCCcEEE
Confidence 432 12368999998765 332 0 0 0 1478999999999999988
|
|
| >PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases | Back alignment and domain information |
|---|
Probab=98.73 E-value=2.1e-07 Score=88.52 Aligned_cols=144 Identities=19% Similarity=0.226 Sum_probs=89.5
Q ss_pred hhHHHHHHHHHHhcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHH
Q 015966 145 VDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMM 224 (397)
Q Consensus 145 ~dkv~stL~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML 224 (397)
++....-.++-+..|.... ..-|+++|.+. | +...|-|.|||-++||..+ ..++.|...|+-..
T Consensus 41 F~~YH~Gfr~Qv~~WP~nP-------vd~iI~~l~~~-~-----~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva~-- 104 (219)
T PF05148_consen 41 FDIYHEGFRQQVKKWPVNP-------VDVIIEWLKKR-P-----KSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVAP-- 104 (219)
T ss_dssp HHHHHHHHHHHHCTSSS-H-------HHHHHHHHCTS-------TTS-EEEES-TT-HHHHH---S---EEEEESS-S--
T ss_pred HHHHHHHHHHHHhcCCCCc-------HHHHHHHHHhc-C-----CCEEEEECCCchHHHHHhc-ccCceEEEeeccCC--
Confidence 4556667788888998652 23466666642 2 4568999999999999664 35677877776430
Q ss_pred HHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe
Q 015966 225 ICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC 304 (397)
Q Consensus 225 ~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~ 304 (397)
| -.+++.|+..+- -.+++.|+||.|
T Consensus 105 -------n---------------------------------------------~~Vtacdia~vP---L~~~svDv~Vfc 129 (219)
T PF05148_consen 105 -------N---------------------------------------------PRVTACDIANVP---LEDESVDVAVFC 129 (219)
T ss_dssp -------S---------------------------------------------TTEEES-TTS-S-----TT-EEEEEEE
T ss_pred -------C---------------------------------------------CCEEEecCccCc---CCCCceeEEEEE
Confidence 0 124667887663 347899999999
Q ss_pred eccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 305 FFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 305 FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
.-|.- .|+.+||++.+|+|||||.+.-. | . .+-.-+.++..+.++++||++....
T Consensus 130 LSLMG-Tn~~~fi~EA~RvLK~~G~L~IA-------E-V------~SRf~~~~~F~~~~~~~GF~~~~~d 184 (219)
T PF05148_consen 130 LSLMG-TNWPDFIREANRVLKPGGILKIA-------E-V------KSRFENVKQFIKALKKLGFKLKSKD 184 (219)
T ss_dssp S---S-S-HHHHHHHHHHHEEEEEEEEEE-------E-E------GGG-S-HHHHHHHHHCTTEEEEEEE
T ss_pred hhhhC-CCcHHHHHHHHheeccCcEEEEE-------E-e------cccCcCHHHHHHHHHHCCCeEEecc
Confidence 87764 47999999999999999988731 1 0 1223377899999999999998854
|
; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B. |
| >KOG2940 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.1e-08 Score=95.44 Aligned_cols=184 Identities=21% Similarity=0.255 Sum_probs=116.6
Q ss_pred HHHHHHhcccccChhHHhhchHHHHHHHHhhCCCC---CCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHH
Q 015966 151 IIRNIVRDWAAEGKTERDQCYKPILEELDALFPNR---SKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMIC 226 (397)
Q Consensus 151 tL~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~---~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~ 226 (397)
-+|.+-|||.+--..... ..+.+++-.++.+. ..+....++++|||+|.++.-|-..|. ..+-+|-|+.|+.-
T Consensus 34 ~~KR~qrdrAa~~~d~k~---dylkeeig~rlaDrvfD~kk~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s 110 (325)
T KOG2940|consen 34 DLKRIQRDRAAWLSDQKN---DYLKEEIGDRLADRVFDCKKSFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKS 110 (325)
T ss_pred HHHHHHHhHHhhcchhhh---hHHHHHHHHHHHHHHHHHhhhCcceeecccchhhhhHHHHhcchhheeeeecchHHHHH
Confidence 577788998763322222 22333332222110 012456899999999999999999986 47889999999854
Q ss_pred HHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeec
Q 015966 227 SSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF 306 (397)
Q Consensus 227 s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FF 306 (397)
++ .++++ ++ .++...+| .|.. ++.++++|.|++..-
T Consensus 111 ~~----~~qdp-----------------------~i--------------~~~~~v~D-EE~L--df~ens~DLiisSls 146 (325)
T KOG2940|consen 111 CR----DAQDP-----------------------SI--------------ETSYFVGD-EEFL--DFKENSVDLIISSLS 146 (325)
T ss_pred hh----ccCCC-----------------------ce--------------EEEEEecc-hhcc--cccccchhhhhhhhh
Confidence 33 11110 11 15667777 3322 245789999998876
Q ss_pred cCChhhHHHHHHHHHHhccCCcEEEE--e-cCCcchhhh---------ccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 307 IDTAHNIVEYIEIISRILKDGGVWIN--L-GPLLYHFAD---------LYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 307 IDta~Ni~~yi~~I~~~LKPGG~wIN--~-GPLlYh~~d---------~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
+.=..++...+..++..|||+|.||. + |.-||-..- .-|..|..+-.--..++-.++.++||......
T Consensus 147 lHW~NdLPg~m~~ck~~lKPDg~FiasmlggdTLyELR~slqLAelER~GGiSphiSPf~qvrDiG~LL~rAGF~m~tvD 226 (325)
T KOG2940|consen 147 LHWTNDLPGSMIQCKLALKPDGLFIASMLGGDTLYELRCSLQLAELEREGGISPHISPFTQVRDIGNLLTRAGFSMLTVD 226 (325)
T ss_pred hhhhccCchHHHHHHHhcCCCccchhHHhccccHHHHHHHhhHHHHHhccCCCCCcChhhhhhhhhhHHhhcCcccceec
Confidence 55445577899999999999999996 3 445554321 11222322212345788999999999988743
Q ss_pred --ecCCCCC
Q 015966 375 --TIETTYT 381 (397)
Q Consensus 375 --~i~~~Y~ 381 (397)
.+..+|-
T Consensus 227 tDEi~v~Yp 235 (325)
T KOG2940|consen 227 TDEIVVGYP 235 (325)
T ss_pred ccceeecCc
Confidence 3455554
|
|
| >smart00650 rADc Ribosomal RNA adenine dimethylases | Back alignment and domain information |
|---|
Probab=98.68 E-value=1.2e-07 Score=85.33 Aligned_cols=96 Identities=15% Similarity=0.039 Sum_probs=65.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|.++.++++++..|+|+|++..|+..++-.+..
T Consensus 13 ~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~----------------------------------- 57 (169)
T smart00650 13 PGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA----------------------------------- 57 (169)
T ss_pred CcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc-----------------------------------
Confidence 456899999999999999999999999999999998765411100
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEee--ccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF--FIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F--FIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
..++.++.+|+.++-. ....||.|+++. .+. .+-+..+++. ..+.++|+++
T Consensus 58 ------~~~v~ii~~D~~~~~~---~~~~~d~vi~n~Py~~~-~~~i~~~l~~--~~~~~~~~l~ 110 (169)
T smart00650 58 ------ADNLTVIHGDALKFDL---PKLQPYKVVGNLPYNIS-TPILFKLLEE--PPAFRDAVLM 110 (169)
T ss_pred ------CCCEEEEECchhcCCc---cccCCCEEEECCCcccH-HHHHHHHHhc--CCCcceEEEE
Confidence 0136788999988632 234699999874 332 2223333332 1245777777
|
|
| >PRK03612 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.66 E-value=3.9e-07 Score=96.69 Aligned_cols=134 Identities=13% Similarity=0.114 Sum_probs=88.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+||++|||.|.++.++++.+ -+|+++|++..|+..++. +|+ +|.
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~-------------~~~------------------l~~ 345 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELART-------------SPA------------------LRA 345 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHh-------------CCc------------------chh
Confidence 45799999999999999999885 489999999999987762 000 010
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhh-----HHHHHHHHHHhccCCcEEEE-ecCCcchh
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN-----IVEYIEIISRILKDGGVWIN-LGPLLYHF 340 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N-----i~~yi~~I~~~LKPGG~wIN-~GPLlYh~ 340 (397)
++... ...+++.++.+|.++... ...++||+|+..+.-...+. -.++++.+.++|||||+++- .++..++
T Consensus 346 ~~~~~-~~dprv~vi~~Da~~~l~--~~~~~fDvIi~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~~~~~~~- 421 (521)
T PRK03612 346 LNGGA-LDDPRVTVVNDDAFNWLR--KLAEKFDVIIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQSTSPYFA- 421 (521)
T ss_pred hhccc-cCCCceEEEEChHHHHHH--hCCCCCCEEEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEecCCcccc-
Confidence 00000 001247889999887432 22478999998754222111 13689999999999999984 3332111
Q ss_pred hhccCCCCCccccCCHHHHHHHHHhCCCE
Q 015966 341 ADLYGQEDEMSIELSLEDVKRVALHYGFE 369 (397)
Q Consensus 341 ~d~~g~~~~~~ieLS~EEl~~ll~~~GFe 369 (397)
. -...++.+.+++.||.
T Consensus 422 ~------------~~~~~i~~~l~~~gf~ 438 (521)
T PRK03612 422 P------------KAFWSIEATLEAAGLA 438 (521)
T ss_pred h------------HHHHHHHHHHHHcCCE
Confidence 1 1125788888899993
|
|
| >TIGR00417 speE spermidine synthase | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.2e-07 Score=90.30 Aligned_cols=122 Identities=14% Similarity=0.212 Sum_probs=81.7
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccc
Q 015966 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIH 247 (397)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~ 247 (397)
.|..++..+.-.... ++.+||++|||+|.++.++++.+ -.|+++|++..|+..++-.+... +
T Consensus 57 ~y~e~l~~~~l~~~~----~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~------------~ 120 (270)
T TIGR00417 57 IYHEMIAHVPLFTHP----NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSL------------A 120 (270)
T ss_pred HHHHHhhhhHhhcCC----CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhh------------c
Confidence 455555554433221 34599999999999999998885 47999999999988766322100 0
Q ss_pred cccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeec--cCChhh--HHHHHHHHHHh
Q 015966 248 SNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF--IDTAHN--IVEYIEIISRI 323 (397)
Q Consensus 248 ~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FF--IDta~N--i~~yi~~I~~~ 323 (397)
. .+. ..++.++.+|..++.. ...++||+|+.-.+ +....+ -.++++.+.++
T Consensus 121 ---~---------~~~-----------~~~v~i~~~D~~~~l~--~~~~~yDvIi~D~~~~~~~~~~l~~~ef~~~~~~~ 175 (270)
T TIGR00417 121 ---G---------SYD-----------DPRVDLQIDDGFKFLA--DTENTFDVIIVDSTDPVGPAETLFTKEFYELLKKA 175 (270)
T ss_pred ---c---------ccc-----------CCceEEEECchHHHHH--hCCCCccEEEEeCCCCCCcccchhHHHHHHHHHHH
Confidence 0 000 1236677788776432 12478999987543 333344 35889999999
Q ss_pred ccCCcEEEE
Q 015966 324 LKDGGVWIN 332 (397)
Q Consensus 324 LKPGG~wIN 332 (397)
|||||+++-
T Consensus 176 L~pgG~lv~ 184 (270)
T TIGR00417 176 LNEDGIFVA 184 (270)
T ss_pred hCCCcEEEE
Confidence 999999995
|
the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM. |
| >PRK01581 speE spermidine synthase; Validated | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.7e-07 Score=94.23 Aligned_cols=144 Identities=17% Similarity=0.190 Sum_probs=93.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
+..+||++|||+|..+.++.+.+ -.|+++|++..|+.+|+. +|+...+.. . +.
T Consensus 150 ~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~-------------~~~L~~~~~-~-------~~---- 204 (374)
T PRK01581 150 DPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARN-------------VPELVSLNK-S-------AF---- 204 (374)
T ss_pred CCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHh-------------ccccchhcc-c-------cC----
Confidence 45699999999999999999875 589999999999988771 111110000 0 00
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCC----hhhH--HHHHHHHHHhccCCcEEEEe-cCCcch
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT----AHNI--VEYIEIISRILKDGGVWINL-GPLLYH 339 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDt----a~Ni--~~yi~~I~~~LKPGG~wIN~-GPLlYh 339 (397)
...++.++.+|..++.. ...++||+|+.-+. |. +..+ .++++.+++.|||||+++.- +...++
T Consensus 205 -------~DpRV~vvi~Da~~fL~--~~~~~YDVIIvDl~-DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Qs~sp~~~ 274 (374)
T PRK01581 205 -------FDNRVNVHVCDAKEFLS--SPSSLYDVIIIDFP-DPATELLSTLYTSELFARIATFLTEDGAFVCQSNSPADA 274 (374)
T ss_pred -------CCCceEEEECcHHHHHH--hcCCCccEEEEcCC-CccccchhhhhHHHHHHHHHHhcCCCcEEEEecCChhhh
Confidence 12348889999887533 23578999987643 21 1122 46899999999999999862 111111
Q ss_pred hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeecCCCC
Q 015966 340 FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTY 380 (397)
Q Consensus 340 ~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~~~Y 380 (397)
..-.-.+.+.++++||....-...-.+|
T Consensus 275 -------------~~~~~~i~~tL~~af~~v~~y~t~vPsy 302 (374)
T PRK01581 275 -------------PLVYWSIGNTIEHAGLTVKSYHTIVPSF 302 (374)
T ss_pred -------------HHHHHHHHHHHHHhCCceEEEEEecCCC
Confidence 0111236677888888776644434444
|
|
| >KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.65 E-value=2e-07 Score=89.40 Aligned_cols=121 Identities=18% Similarity=0.177 Sum_probs=88.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
...-|||+|||+|--+-.|...|+...|+|+|+.||..|.- . .+.
T Consensus 50 ~~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~--------~----------------------e~e----- 94 (270)
T KOG1541|consen 50 KSGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVE--------R----------------------ELE----- 94 (270)
T ss_pred CCcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHH--------h----------------------hhh-----
Confidence 46789999999999999999999999999999999987651 0 110
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-----------ccCChhhHHHHHHHHHHhccCCcEEEEecCCc
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-----------FIDTAHNIVEYIEIISRILKDGGVWINLGPLL 337 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-----------FIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLl 337 (397)
=.++.+||-+ +.|+..++||.|++.= +=++..-+..+|.+.+.+||+|+..+- .
T Consensus 95 ---------gdlil~DMG~--GlpfrpGtFDg~ISISAvQWLcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~----Q 159 (270)
T KOG1541|consen 95 ---------GDLILCDMGE--GLPFRPGTFDGVISISAVQWLCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVL----Q 159 (270)
T ss_pred ---------cCeeeeecCC--CCCCCCCccceEEEeeeeeeecccCccccChHHHHHHHhhhhhhhhccCceeEE----E
Confidence 1345677764 4467789999998752 112445577789999999999999993 2
Q ss_pred chhhhccCCCCCccccCCHHHHHHHHHhCCCE
Q 015966 338 YHFADLYGQEDEMSIELSLEDVKRVALHYGFE 369 (397)
Q Consensus 338 Yh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFe 369 (397)
|--+ .+=..|-|..-+.++||-
T Consensus 160 fYpe----------n~~q~d~i~~~a~~aGF~ 181 (270)
T KOG1541|consen 160 FYPE----------NEAQIDMIMQQAMKAGFG 181 (270)
T ss_pred eccc----------chHHHHHHHHHHHhhccC
Confidence 2111 123567777777788884
|
|
| >PRK04457 spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.5e-07 Score=91.52 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=74.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
+..+||++|||.|.++..+++. +-.++++|+++.|+..|+--.. .|.
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~-------------------------------~~~ 114 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFE-------------------------------LPE 114 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcC-------------------------------CCC
Confidence 3568999999999999999876 4679999999999987762110 000
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCCh----hhHHHHHHHHHHhccCCcEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA----HNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta----~Ni~~yi~~I~~~LKPGG~wI 331 (397)
...++.++.||+.++.. ...++||+|+.-.|-... ..-.++++.+.++|+|||+++
T Consensus 115 -------~~~rv~v~~~Da~~~l~--~~~~~yD~I~~D~~~~~~~~~~l~t~efl~~~~~~L~pgGvlv 174 (262)
T PRK04457 115 -------NGERFEVIEADGAEYIA--VHRHSTDVILVDGFDGEGIIDALCTQPFFDDCRNALSSDGIFV 174 (262)
T ss_pred -------CCCceEEEECCHHHHHH--hCCCCCCEEEEeCCCCCCCccccCcHHHHHHHHHhcCCCcEEE
Confidence 01247889999887543 224689999875542221 123589999999999999997
|
|
| >PLN03075 nicotianamine synthase; Provisional | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.9e-07 Score=90.67 Aligned_cols=104 Identities=13% Similarity=0.190 Sum_probs=75.0
Q ss_pred CCCeEEEecCCCChh-HHHHHH-cC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCcccccc
Q 015966 189 SPPACLVPGAGLGRL-ALEISH-LG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (397)
Q Consensus 189 ~~~rVLvPGCGlGRL-a~eLA~-~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~i 264 (397)
.+.+||++|||-|.+ +.-+++ ++ -.++|+|.|..|+..|+-.....
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~------------------------------ 172 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSD------------------------------ 172 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhc------------------------------
Confidence 568999999997765 444443 32 35999999999998887332100
Q ss_pred CCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCC-hhhHHHHHHHHHHhccCCcEEEE
Q 015966 265 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT-AHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 265 PDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDt-a~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
+ .+.+++.|..+|..++.. ..+.||+|++.-.++- +++-.++++.+++.|||||+++-
T Consensus 173 ~-------gL~~rV~F~~~Da~~~~~---~l~~FDlVF~~ALi~~dk~~k~~vL~~l~~~LkPGG~Lvl 231 (296)
T PLN03075 173 P-------DLSKRMFFHTADVMDVTE---SLKEYDVVFLAALVGMDKEEKVKVIEHLGKHMAPGALLML 231 (296)
T ss_pred c-------CccCCcEEEECchhhccc---ccCCcCEEEEecccccccccHHHHHHHHHHhcCCCcEEEE
Confidence 0 123458999999888632 1468999988744442 35678999999999999999994
|
|
| >PLN02781 Probable caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.8e-07 Score=88.13 Aligned_cols=111 Identities=15% Similarity=0.177 Sum_probs=79.4
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccccc
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~S 250 (397)
++..|.+.. +..+||++|||+|.-+..||+. +-.|+++|.+..++..|+-.+...
T Consensus 59 ~L~~l~~~~------~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~---------------- 116 (234)
T PLN02781 59 FLSMLVKIM------NAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKA---------------- 116 (234)
T ss_pred HHHHHHHHh------CCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc----------------
Confidence 555555543 4569999999999988888764 348999999999998877433211
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCC--C-CCCCCccEEEEeeccCCh-hhHHHHHHHHHHhccC
Q 015966 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD--P-SQVGAWDAVVTCFFIDTA-HNIVEYIEIISRILKD 326 (397)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~--~-~~~~~fD~VvT~FFIDta-~Ni~~yi~~I~~~LKP 326 (397)
....++.++.||..++... + ...++||+| |+|.. ++..+|++.+.++|||
T Consensus 117 ----------------------gl~~~i~~~~gda~~~L~~l~~~~~~~~fD~V----fiDa~k~~y~~~~~~~~~ll~~ 170 (234)
T PLN02781 117 ----------------------GVDHKINFIQSDALSALDQLLNNDPKPEFDFA----FVDADKPNYVHFHEQLLKLVKV 170 (234)
T ss_pred ----------------------CCCCcEEEEEccHHHHHHHHHhCCCCCCCCEE----EECCCHHHHHHHHHHHHHhcCC
Confidence 1112377888998775210 0 014689998 56754 5577999999999999
Q ss_pred CcEEEE
Q 015966 327 GGVWIN 332 (397)
Q Consensus 327 GG~wIN 332 (397)
||++|-
T Consensus 171 GG~ii~ 176 (234)
T PLN02781 171 GGIIAF 176 (234)
T ss_pred CeEEEE
Confidence 999883
|
|
| >PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.5e-07 Score=94.18 Aligned_cols=125 Identities=10% Similarity=0.082 Sum_probs=85.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|.++...+..|. .|+++|.|..|+..++.-+.. + .+.
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~----N----------------------gl~---- 269 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVEL----N----------------------KLD---- 269 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----c----------------------CCC----
Confidence 457999999999999998887776 799999999999877632210 0 000
Q ss_pred CCCCCCCCCcceeEecccccccCC-CCCCCCccEEEEe--eccCCh-------hhHHHHHHHHHHhccCCcEEEEecCCc
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTC--FFIDTA-------HNIVEYIEIISRILKDGGVWINLGPLL 337 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~-~~~~~~fD~VvT~--FFIDta-------~Ni~~yi~~I~~~LKPGG~wIN~GPLl 337 (397)
..++.++.||+.++... ....++||+|+.. +|.... .+..++++...++|||||+++-+.
T Consensus 270 -------~~~v~~i~~D~~~~l~~~~~~~~~fDlVilDPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~s--- 339 (396)
T PRK15128 270 -------LSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFS--- 339 (396)
T ss_pred -------CCcEEEEEccHHHHHHHHHhcCCCCCEEEECCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEe---
Confidence 01367899998875310 0123589999975 565443 235566778899999999999421
Q ss_pred chhhhccCCCCCccccCCHHHHHHHHHh
Q 015966 338 YHFADLYGQEDEMSIELSLEDVKRVALH 365 (397)
Q Consensus 338 Yh~~d~~g~~~~~~ieLS~EEl~~ll~~ 365 (397)
. +-.++.+++++++.+
T Consensus 340 ----c--------s~~~~~~~f~~~v~~ 355 (396)
T PRK15128 340 ----C--------SGLMTSDLFQKIIAD 355 (396)
T ss_pred ----C--------CCcCCHHHHHHHHHH
Confidence 1 234667777776653
|
|
| >PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.61 E-value=4.2e-07 Score=91.28 Aligned_cols=110 Identities=17% Similarity=0.120 Sum_probs=74.0
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC---eEEEEeCCHHHHHHHHhhhhcccccCcccccccccc
Q 015966 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF---ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 248 (397)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf---~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~ 248 (397)
+.++..+.+.+.. +++.+|||+|||+|.++..+|++.- .|+|+|+|..|+..|+..+...
T Consensus 66 p~l~a~ll~~L~i---~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~-------------- 128 (322)
T PRK13943 66 PSLMALFMEWVGL---DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRL-------------- 128 (322)
T ss_pred HHHHHHHHHhcCC---CCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc--------------
Confidence 3344555554432 2567999999999999999998642 5999999999998776332110
Q ss_pred ccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCc
Q 015966 249 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGG 328 (397)
Q Consensus 249 ~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG 328 (397)
+ ..++.++.||+.+... ..+.||+|+..+-+. ++ .+.+.+.|||||
T Consensus 129 ------------g-------------~~nV~~i~gD~~~~~~---~~~~fD~Ii~~~g~~---~i---p~~~~~~LkpgG 174 (322)
T PRK13943 129 ------------G-------------IENVIFVCGDGYYGVP---EFAPYDVIFVTVGVD---EV---PETWFTQLKEGG 174 (322)
T ss_pred ------------C-------------CCcEEEEeCChhhccc---ccCCccEEEECCchH---Hh---HHHHHHhcCCCC
Confidence 0 0125677888766432 235799998764332 23 345678999999
Q ss_pred EEEE
Q 015966 329 VWIN 332 (397)
Q Consensus 329 ~wIN 332 (397)
.++.
T Consensus 175 ~Lvv 178 (322)
T PRK13943 175 RVIV 178 (322)
T ss_pred EEEE
Confidence 9874
|
|
| >COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=6.3e-08 Score=93.22 Aligned_cols=134 Identities=16% Similarity=0.143 Sum_probs=88.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
.-.++||+|||||-.+-.|-.+--..+|+|+|.-||..|. ++. +|-
T Consensus 125 ~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~-------eKg---~YD------------------------ 170 (287)
T COG4976 125 PFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAH-------EKG---LYD------------------------ 170 (287)
T ss_pred ccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHH-------hcc---chH------------------------
Confidence 3579999999999999999888889999999999997654 111 111
Q ss_pred CCCCCCCCcceeEecc---cccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe---cCCcchhhh
Q 015966 269 PASAGITEGFSMCGGD---FVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL---GPLLYHFAD 342 (397)
Q Consensus 269 p~~~~~~~~ls~~~GD---F~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~---GPLlYh~~d 342 (397)
.+.++| |.+.. ..+.||.|+..=.+.-.-++...+-.+...|+|||+|+-- +|=-+.|.-
T Consensus 171 ----------~L~~Aea~~Fl~~~----~~er~DLi~AaDVl~YlG~Le~~~~~aa~~L~~gGlfaFSvE~l~~~~~f~l 236 (287)
T COG4976 171 ----------TLYVAEAVLFLEDL----TQERFDLIVAADVLPYLGALEGLFAGAAGLLAPGGLFAFSVETLPDDGGFVL 236 (287)
T ss_pred ----------HHHHHHHHHHhhhc----cCCcccchhhhhHHHhhcchhhHHHHHHHhcCCCceEEEEecccCCCCCeec
Confidence 112223 44321 2578999986422111223556788899999999999931 111111110
Q ss_pred ccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 343 LYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 343 ~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
.|-..+-=+..-++.++...||+++..+
T Consensus 237 ----~ps~RyAH~~~YVr~~l~~~Gl~~i~~~ 264 (287)
T COG4976 237 ----GPSQRYAHSESYVRALLAASGLEVIAIE 264 (287)
T ss_pred ----chhhhhccchHHHHHHHHhcCceEEEee
Confidence 1111233477889999999999999854
|
|
| >PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like | Back alignment and domain information |
|---|
Probab=98.55 E-value=8.8e-07 Score=84.53 Aligned_cols=139 Identities=17% Similarity=0.197 Sum_probs=89.2
Q ss_pred CCCeEEEecCCCChhHHHH-HHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEI-SHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eL-A~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
...++||-|||.||.+..| ...--.|.-+|.....+..|+--+.. . .. .
T Consensus 55 ~~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~--~-------------------~~---~------ 104 (218)
T PF05891_consen 55 KFNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGK--D-------------------NP---R------ 104 (218)
T ss_dssp --SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCC--G-------------------GC---C------
T ss_pred CcceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcc--c-------------------CC---C------
Confidence 5679999999999999866 55555799999999999877622110 0 00 0
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCCcEEE---EecCCcc-hhh
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWI---NLGPLLY-HFA 341 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPGG~wI---N~GPLlY-h~~ 341 (397)
--.+.+.-+.++.+ ..++||+|.+-..+- |-.++++||+.....|+|||+.| |+..--+ .|.
T Consensus 105 ---------v~~~~~~gLQ~f~P---~~~~YDlIW~QW~lghLTD~dlv~fL~RCk~~L~~~G~IvvKEN~~~~~~~~~D 172 (218)
T PF05891_consen 105 ---------VGEFYCVGLQDFTP---EEGKYDLIWIQWCLGHLTDEDLVAFLKRCKQALKPNGVIVVKENVSSSGFDEFD 172 (218)
T ss_dssp ---------EEEEEES-GGG-------TT-EEEEEEES-GGGS-HHHHHHHHHHHHHHEEEEEEEEEEEEEESSSEEEEE
T ss_pred ---------cceEEecCHhhccC---CCCcEeEEEehHhhccCCHHHHHHHHHHHHHhCcCCcEEEEEecCCCCCCcccC
Confidence 01223333344332 247999999886432 44679999999999999999998 6544222 111
Q ss_pred hccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 342 DLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 342 d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
. ...|+--|.+.++++++++|+++++++
T Consensus 173 ~-----~DsSvTRs~~~~~~lF~~AGl~~v~~~ 200 (218)
T PF05891_consen 173 E-----EDSSVTRSDEHFRELFKQAGLRLVKEE 200 (218)
T ss_dssp T-----TTTEEEEEHHHHHHHHHHCT-EEEEEE
T ss_pred C-----ccCeeecCHHHHHHHHHHcCCEEEEec
Confidence 1 123778899999999999999999966
|
; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B. |
| >PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.6e-06 Score=84.72 Aligned_cols=140 Identities=20% Similarity=0.196 Sum_probs=94.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
+..++||+|+|-|..+..+|..--+|.+.|.|..|-. .|+. +.| +
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~----rL~~----kg~----------------------~----- 138 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRW----RLSK----KGF----------------------T----- 138 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHH----HHHh----CCC----------------------e-----
Confidence 5678999999999999999998889999999999953 2321 112 1
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE--ecCCcchhhhc-cC
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN--LGPLLYHFADL-YG 345 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN--~GPLlYh~~d~-~g 345 (397)
.+ |..++.. ...+||+|.+..-||...+....++.|++.|||+|++|- +=|. -+|-+. .|
T Consensus 139 -----------vl--~~~~w~~---~~~~fDvIscLNvLDRc~~P~~LL~~i~~~l~p~G~lilAvVlP~-~pyVE~~~g 201 (265)
T PF05219_consen 139 -----------VL--DIDDWQQ---TDFKFDVISCLNVLDRCDRPLTLLRDIRRALKPNGRLILAVVLPF-RPYVEFGGG 201 (265)
T ss_pred -----------EE--ehhhhhc---cCCceEEEeehhhhhccCCHHHHHHHHHHHhCCCCEEEEEEEecc-cccEEcCCC
Confidence 11 1122221 136899998888999999999999999999999999995 2221 123221 11
Q ss_pred C--CCC-------ccccCCHHHHHHHHHhCCCEEEEEeecCCCCCC
Q 015966 346 Q--EDE-------MSIELSLEDVKRVALHYGFEFEKEKTIETTYTT 382 (397)
Q Consensus 346 ~--~~~-------~~ieLS~EEl~~ll~~~GFeii~e~~i~~~Y~~ 382 (397)
. .|. .++|=..+-+..+++.+||+++.- ...+|+.
T Consensus 202 ~~~~P~e~l~~~g~~~E~~v~~l~~v~~p~GF~v~~~--tr~PYLc 245 (265)
T PF05219_consen 202 KSNRPSELLPVKGATFEEQVSSLVNVFEPAGFEVERW--TRLPYLC 245 (265)
T ss_pred CCCCchhhcCCCCCcHHHHHHHHHHHHHhcCCEEEEE--eccCccc
Confidence 1 111 122223344557889999998764 3456654
|
The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases. |
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=4.4e-07 Score=99.48 Aligned_cols=129 Identities=13% Similarity=0.101 Sum_probs=88.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|.++..+|+.|.. |+++|+|..|+..++--+.. + ++.
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~----n----------------------g~~---- 587 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFAL----N----------------------GLS---- 587 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH----h----------------------CCC----
Confidence 4679999999999999999999974 99999999999877632210 0 000
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--eccCC---------hhhHHHHHHHHHHhccCCcEEEEecCC
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDT---------AHNIVEYIEIISRILKDGGVWINLGPL 336 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFIDt---------a~Ni~~yi~~I~~~LKPGG~wIN~GPL 336 (397)
..++.++.+|..++.. ...++||+|+.. +|... ..+..++++.+.++|||||+++-..-
T Consensus 588 -------~~~v~~i~~D~~~~l~--~~~~~fDlIilDPP~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~- 657 (702)
T PRK11783 588 -------GRQHRLIQADCLAWLK--EAREQFDLIFIDPPTFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN- 657 (702)
T ss_pred -------ccceEEEEccHHHHHH--HcCCCcCEEEECCCCCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC-
Confidence 0137889999877532 114689999875 44321 23456678888999999999873210
Q ss_pred cchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 337 LYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 337 lYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
+-.++.+ .+++.+.||++...
T Consensus 658 --------------~~~~~~~--~~~~~~~g~~~~~i 678 (702)
T PRK11783 658 --------------KRGFKMD--EEGLAKLGLKAEEI 678 (702)
T ss_pred --------------CccCChh--HHHHHhCCCeEEEE
Confidence 0112222 66777889988764
|
|
| >PRK10901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.1e-06 Score=90.99 Aligned_cols=130 Identities=15% Similarity=0.102 Sum_probs=84.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|..+..+++++ ..|+|+|+|..|+..++..+... ++
T Consensus 244 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~--------------------------g~---- 293 (427)
T PRK10901 244 NGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRL--------------------------GL---- 293 (427)
T ss_pred CCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHc--------------------------CC----
Confidence 56799999999999999999885 48999999999998765322110 00
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEE---ee------------ccCChhhH-------HHHHHHHHHhc
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---CF------------FIDTAHNI-------VEYIEIISRIL 324 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT---~F------------FIDta~Ni-------~~yi~~I~~~L 324 (397)
++.++.+|+.++... ...++||.|+. |+ +..+..++ .+.|+.+.++|
T Consensus 294 ----------~~~~~~~D~~~~~~~-~~~~~fD~Vl~D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~L 362 (427)
T PRK10901 294 ----------KATVIVGDARDPAQW-WDGQPFDRILLDAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLL 362 (427)
T ss_pred ----------CeEEEEcCcccchhh-cccCCCCEEEECCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 135677887654210 11367999984 22 11233333 36799999999
Q ss_pred cCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHh-CCCEEEE
Q 015966 325 KDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALH-YGFEFEK 372 (397)
Q Consensus 325 KPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~-~GFeii~ 372 (397)
||||++|-.---++ .+=..+.+...+++ -+|+++.
T Consensus 363 kpGG~lvystcs~~-------------~~Ene~~v~~~l~~~~~~~~~~ 398 (427)
T PRK10901 363 KPGGTLLYATCSIL-------------PEENEQQIKAFLARHPDAELLD 398 (427)
T ss_pred CCCCEEEEEeCCCC-------------hhhCHHHHHHHHHhCCCCEEec
Confidence 99999983110011 12234667777765 4787665
|
|
| >PLN02672 methionine S-methyltransferase | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.5e-06 Score=97.13 Aligned_cols=142 Identities=18% Similarity=0.176 Sum_probs=88.0
Q ss_pred CCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 190 PPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
+.+|||+|||+|.++..||+++ ..|+|+|+|..|+..|+.-+.. + ...... .+..
T Consensus 119 ~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~----n-------------~l~~~~------~~~~ 175 (1082)
T PLN02672 119 DKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYL----N-------------ALDDDG------LPVY 175 (1082)
T ss_pred CCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH----c-------------Cccccc------cccc
Confidence 4689999999999999999875 5899999999999888632211 0 000000 0000
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-ccCCh------hh----------------------------
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA------HN---------------------------- 312 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta------~N---------------------------- 312 (397)
.........++.++.+|+.+... ....+||+||++= ||.+. +.
T Consensus 176 ~~~~~~l~~rV~f~~sDl~~~~~--~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dG 253 (1082)
T PLN02672 176 DGEGKTLLDRVEFYESDLLGYCR--DNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFG 253 (1082)
T ss_pred ccccccccccEEEEECchhhhcc--ccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcH
Confidence 00000112348899999877432 1123799999982 33211 11
Q ss_pred ---HHHHHHHHHHhccCCcEEEE-ecCCcchhhhccCCCCCccccCCHHHHH-HHHHhCCCEEEEEe
Q 015966 313 ---IVEYIEIISRILKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVK-RVALHYGFEFEKEK 374 (397)
Q Consensus 313 ---i~~yi~~I~~~LKPGG~wIN-~GPLlYh~~d~~g~~~~~~ieLS~EEl~-~ll~~~GFeii~e~ 374 (397)
+.+.++...++|||||+++- +|. --.+.+. +++++.||+..+.+
T Consensus 254 L~~yr~i~~~a~~~L~pgG~l~lEiG~------------------~q~~~v~~~l~~~~gf~~~~~~ 302 (1082)
T PLN02672 254 LGLIARAVEEGISVIKPMGIMIFNMGG------------------RPGQAVCERLFERRGFRITKLW 302 (1082)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEECc------------------cHHHHHHHHHHHHCCCCeeEEe
Confidence 12345666689999998872 331 1134677 68999999987754
|
|
| >PRK14904 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.6e-06 Score=90.16 Aligned_cols=100 Identities=16% Similarity=0.095 Sum_probs=70.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|..+..+|++ +..|+|+|+|..|+..++-.++.. ++
T Consensus 250 ~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~--------------------------g~--- 300 (445)
T PRK14904 250 PGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASAL--------------------------GI--- 300 (445)
T ss_pred CCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh--------------------------CC---
Confidence 5679999999999998888764 458999999999998765322110 00
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEE---e----e--------ccCChhhH-------HHHHHHHHHh
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---C----F--------FIDTAHNI-------VEYIEIISRI 323 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT---~----F--------FIDta~Ni-------~~yi~~I~~~ 323 (397)
.++.++.+|+.++.. .+.||+|+. | . +..+..++ .+.|+.++++
T Consensus 301 ----------~~v~~~~~Da~~~~~----~~~fD~Vl~D~Pcsg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~ 366 (445)
T PRK14904 301 ----------TIIETIEGDARSFSP----EEQPDAILLDAPCTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASL 366 (445)
T ss_pred ----------CeEEEEeCccccccc----CCCCCEEEEcCCCCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 125678888877532 468999984 1 1 11222333 2579999999
Q ss_pred ccCCcEEE
Q 015966 324 LKDGGVWI 331 (397)
Q Consensus 324 LKPGG~wI 331 (397)
|||||++|
T Consensus 367 lkpgG~lv 374 (445)
T PRK14904 367 LKPGGVLV 374 (445)
T ss_pred cCCCcEEE
Confidence 99999999
|
|
| >PLN02366 spermidine synthase | Back alignment and domain information |
|---|
Probab=98.43 E-value=2.3e-06 Score=85.49 Aligned_cols=108 Identities=23% Similarity=0.235 Sum_probs=75.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
+..+||++|||.|.++.++++.. -.|+.+|++..|+..|+--+ |.++ . .
T Consensus 91 ~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f------------~~~~---~---------~----- 141 (308)
T PLN02366 91 NPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFF------------PDLA---V---------G----- 141 (308)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhh------------hhhc---c---------c-----
Confidence 46799999999999999999984 37999999999998776221 1000 0 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--Chhh--HHHHHHHHHHhccCCcEEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHN--IVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~N--i~~yi~~I~~~LKPGG~wIN 332 (397)
....++.++.+|.+++... ...++||+|+.-.+-. .+.. -.++++.++++|+|||+++.
T Consensus 142 ------~~dpRv~vi~~Da~~~l~~-~~~~~yDvIi~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 142 ------FDDPRVNLHIGDGVEFLKN-APEGTYDAIIVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred ------cCCCceEEEEChHHHHHhh-ccCCCCCEEEEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 0123588999998765321 1146899998744321 1111 24789999999999999985
|
|
| >PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase [] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.1e-06 Score=91.77 Aligned_cols=115 Identities=23% Similarity=0.204 Sum_probs=79.3
Q ss_pred HHHHHHhhCCCCCCC-CCCeEEEecCCCChhHHHHHHcC------CeEEEEeCCHHHHHHHHhhhhcccccCcccccccc
Q 015966 174 ILEELDALFPNRSKE-SPPACLVPGAGLGRLALEISHLG------FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWI 246 (397)
Q Consensus 174 Il~~L~~~~p~~~~~-~~~rVLvPGCGlGRLa~eLA~~G------f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi 246 (397)
|.++|.+........ +...|||+|||+|-|+...++.| ..|.++|-+..+..+.+.+.+. +.
T Consensus 170 I~~al~D~~~~~~~~~~~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~----n~------- 238 (448)
T PF05185_consen 170 IEEALKDRVRKNSYSSKDKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNA----NG------- 238 (448)
T ss_dssp HHHHHHHHHTTS-SEETT-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHH----TT-------
T ss_pred HHHHHHhhhhhccccccceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHh----cC-------
Confidence 445555554432111 35789999999999998888877 6899999998777655433221 11
Q ss_pred ccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe---eccCChhhHHHHHHHHHHh
Q 015966 247 HSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRI 323 (397)
Q Consensus 247 ~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~---FFIDta~Ni~~yi~~I~~~ 323 (397)
..+.+.++.||++++.. .++.|+||+= .|.+.. -..+.|....+.
T Consensus 239 ---------------------------w~~~V~vi~~d~r~v~l----pekvDIIVSElLGsfg~nE-l~pE~Lda~~rf 286 (448)
T PF05185_consen 239 ---------------------------WGDKVTVIHGDMREVEL----PEKVDIIVSELLGSFGDNE-LSPECLDAADRF 286 (448)
T ss_dssp ---------------------------TTTTEEEEES-TTTSCH----SS-EEEEEE---BTTBTTT-SHHHHHHHGGGG
T ss_pred ---------------------------CCCeEEEEeCcccCCCC----CCceeEEEEeccCCccccc-cCHHHHHHHHhh
Confidence 12347889999999854 3689999986 477764 466889999999
Q ss_pred ccCCcEEE
Q 015966 324 LKDGGVWI 331 (397)
Q Consensus 324 LKPGG~wI 331 (397)
|||||+.|
T Consensus 287 Lkp~Gi~I 294 (448)
T PF05185_consen 287 LKPDGIMI 294 (448)
T ss_dssp EEEEEEEE
T ss_pred cCCCCEEe
Confidence 99999999
|
These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B .... |
| >COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.40 E-value=7.6e-06 Score=80.62 Aligned_cols=119 Identities=24% Similarity=0.252 Sum_probs=82.4
Q ss_pred eEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCC
Q 015966 192 ACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (397)
Q Consensus 192 rVLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p 269 (397)
+|||+|||+|-+|.-||+.+- .|+|+|+|...|.+|+- |.. . + .
T Consensus 113 ~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~--Na~-~-~----------------------~-------- 158 (280)
T COG2890 113 RILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARE--NAE-R-N----------------------G-------- 158 (280)
T ss_pred cEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHH--HHH-H-c----------------------C--------
Confidence 799999999999999999986 89999999999998872 211 0 0 0
Q ss_pred CCCCCCCcceeEecccccccCCCCCCCCccEEEEee-ccCCh------------------------hhHHHHHHHHHHhc
Q 015966 270 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA------------------------HNIVEYIEIISRIL 324 (397)
Q Consensus 270 ~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta------------------------~Ni~~yi~~I~~~L 324 (397)
. .++..+.+|+++-. .++||+||++= ||+.. .-+...++.+.+.|
T Consensus 159 ----l-~~~~~~~~dlf~~~-----~~~fDlIVsNPPYip~~~~~~~~~~~~~EP~~Al~~g~dGl~~~~~i~~~a~~~l 228 (280)
T COG2890 159 ----L-VRVLVVQSDLFEPL-----RGKFDLIVSNPPYIPAEDPELLPEVVRYEPLLALVGGGDGLEVYRRILGEAPDIL 228 (280)
T ss_pred ----C-ccEEEEeeeccccc-----CCceeEEEeCCCCCCCcccccChhhhccCHHHHHccCccHHHHHHHHHHhhHHHc
Confidence 0 12445555655432 35899998872 33332 12345677788999
Q ss_pred cCCcEEEEecCCcchhhhccCCCCCcccc-CCHHHHHHHHHhCC-CEEEE
Q 015966 325 KDGGVWINLGPLLYHFADLYGQEDEMSIE-LSLEDVKRVALHYG-FEFEK 372 (397)
Q Consensus 325 KPGG~wIN~GPLlYh~~d~~g~~~~~~ie-LS~EEl~~ll~~~G-Feii~ 372 (397)
+|||+++- + +. -..+.+++++.+.| |..+.
T Consensus 229 ~~~g~l~l--------e----------~g~~q~~~v~~~~~~~~~~~~v~ 260 (280)
T COG2890 229 KPGGVLIL--------E----------IGLTQGEAVKALFEDTGFFEIVE 260 (280)
T ss_pred CCCcEEEE--------E----------ECCCcHHHHHHHHHhcCCceEEE
Confidence 99998883 0 11 23678999999999 55444
|
|
| >PRK04148 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=2.7e-06 Score=75.71 Aligned_cols=100 Identities=11% Similarity=0.089 Sum_probs=73.7
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCCh-hHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGR-LALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGR-La~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
.|-++|.++++.. ++.+|||+|||.|. +|..|+++|++|+|+|+++..+..++ +
T Consensus 3 ~i~~~l~~~~~~~---~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~-------~--------------- 57 (134)
T PRK04148 3 TIAEFIAENYEKG---KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAK-------K--------------- 57 (134)
T ss_pred HHHHHHHHhcccc---cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHH-------H---------------
Confidence 4677888888753 45799999999996 99999999999999999999764332 0
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccC
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKD 326 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKP 326 (397)
..+..+.+|.++.- ++-.+.+|+|.+ |-..+.++..+-.+++-++-
T Consensus 58 ------------------------~~~~~v~dDlf~p~--~~~y~~a~liys---irpp~el~~~~~~la~~~~~ 103 (134)
T PRK04148 58 ------------------------LGLNAFVDDLFNPN--LEIYKNAKLIYS---IRPPRDLQPFILELAKKINV 103 (134)
T ss_pred ------------------------hCCeEEECcCCCCC--HHHHhcCCEEEE---eCCCHHHHHHHHHHHHHcCC
Confidence 01345667776531 122357899977 67778888888888886653
|
|
| >COG2521 Predicted archaeal methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.40 E-value=1.8e-06 Score=83.57 Aligned_cols=151 Identities=23% Similarity=0.261 Sum_probs=102.4
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
|+.+.+.+. .....+++.+|||-.-|+|..|.+-+++|. .|..+|-.+.-|..| ++-||-+
T Consensus 119 P~~Dt~~Kv-~~V~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa-------------~lNPwSr---- 180 (287)
T COG2521 119 PLEDTLAKV-ELVKVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELA-------------KLNPWSR---- 180 (287)
T ss_pred cHHHHHhhh-heeccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEee-------------ccCCCCc----
Confidence 455555542 111224688999999999999999999999 999999999877543 2445522
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe---eccCChhhHHHHHHHHHHhccCCc
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGG 328 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~---FFIDta~Ni~~yi~~I~~~LKPGG 328 (397)
+ +.. ..+.++.||..++-. ...+++||+|+-- |-+.+.---.++.++++++|||||
T Consensus 181 ----~--l~~--------------~~i~iilGD~~e~V~-~~~D~sfDaIiHDPPRfS~AgeLYseefY~El~RiLkrgG 239 (287)
T COG2521 181 ----E--LFE--------------IAIKIILGDAYEVVK-DFDDESFDAIIHDPPRFSLAGELYSEEFYRELYRILKRGG 239 (287)
T ss_pred ----c--ccc--------------cccEEecccHHHHHh-cCCccccceEeeCCCccchhhhHhHHHHHHHHHHHcCcCC
Confidence 1 111 127789999888643 2457889999853 545554334578999999999999
Q ss_pred EEEEecCCcchhhhccCCCCCccccCC-HHHHHHHHHhCCCEEEE
Q 015966 329 VWINLGPLLYHFADLYGQEDEMSIELS-LEDVKRVALHYGFEFEK 372 (397)
Q Consensus 329 ~wIN~GPLlYh~~d~~g~~~~~~ieLS-~EEl~~ll~~~GFeii~ 372 (397)
.+. ||-..+|. ..-.+. .-.+.+.|+++||+.++
T Consensus 240 rlF-------HYvG~Pg~---ryrG~d~~~gVa~RLr~vGF~~v~ 274 (287)
T COG2521 240 RLF-------HYVGNPGK---RYRGLDLPKGVAERLRRVGFEVVK 274 (287)
T ss_pred cEE-------EEeCCCCc---ccccCChhHHHHHHHHhcCceeee
Confidence 876 44432221 111222 35778889999999766
|
|
| >PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.39 E-value=5.9e-06 Score=85.79 Aligned_cols=136 Identities=15% Similarity=0.229 Sum_probs=85.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|.++..||+.+..|+|+|+|..|+..|+..+.. + .
T Consensus 297 ~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~----~----------------------~------- 343 (443)
T PRK13168 297 PGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARR----N----------------------G------- 343 (443)
T ss_pred CCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHH----c----------------------C-------
Confidence 457999999999999999999999999999999999887732210 0 0
Q ss_pred CCCCCCCCcceeEecccccccC-CCCCCCCccEEEEeeccCChh-hHHHHHHHHHHhccCCcE-EEEecCCcchhhhccC
Q 015966 269 PASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTCFFIDTAH-NIVEYIEIISRILKDGGV-WINLGPLLYHFADLYG 345 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~-~~~~~~~fD~VvT~FFIDta~-Ni~~yi~~I~~~LKPGG~-wIN~GPLlYh~~d~~g 345 (397)
..++.+.++|+.+... .+...++||+|+. |... .+.+.++.+.+ |+|+++ +|...|...
T Consensus 344 ------~~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~----dPPr~g~~~~~~~l~~-~~~~~ivyvSCnp~tl------- 405 (443)
T PRK13168 344 ------LDNVTFYHANLEEDFTDQPWALGGFDKVLL----DPPRAGAAEVMQALAK-LGPKRIVYVSCNPATL------- 405 (443)
T ss_pred ------CCceEEEEeChHHhhhhhhhhcCCCCEEEE----CcCCcChHHHHHHHHh-cCCCeEEEEEeChHHh-------
Confidence 0126788899866421 1112357999964 4332 13455666666 466655 445555321
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEeec-CCCCCCCccc
Q 015966 346 QEDEMSIELSLEDVKRVALHYGFEFEKEKTI-ETTYTTNPRS 386 (397)
Q Consensus 346 ~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i-~~~Y~~d~~s 386 (397)
.-|+..+ .+.||++.+-... -=++|..-++
T Consensus 406 ----------aRDl~~L-~~~gY~l~~i~~~DmFP~T~HvE~ 436 (443)
T PRK13168 406 ----------ARDAGVL-VEAGYRLKRAGMLDMFPHTGHVES 436 (443)
T ss_pred ----------hccHHHH-hhCCcEEEEEEEeccCCCCCcEEE
Confidence 1233333 3569999986633 2334434333
|
|
| >COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.37 E-value=7.3e-06 Score=76.65 Aligned_cols=122 Identities=21% Similarity=0.171 Sum_probs=89.2
Q ss_pred CCCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 188 ESPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 188 ~~~~rVLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
+++.+++|+|||+|.++.|+|..|. +|+++|-...++...+. |.. .+.
T Consensus 33 ~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~--N~~--------------------------~fg-- 82 (187)
T COG2242 33 RPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIER--NAA--------------------------RFG-- 82 (187)
T ss_pred CCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHH--HHH--------------------------HhC--
Confidence 4778999999999999999996664 79999999999876552 211 001
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE-ecCCcchhhhcc
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN-LGPLLYHFADLY 344 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN-~GPLlYh~~d~~ 344 (397)
.+++.++.||.-+... ...++|+| ||--..++.+.|+.....|||||.+|- .--
T Consensus 83 ---------~~n~~vv~g~Ap~~L~---~~~~~dai----FIGGg~~i~~ile~~~~~l~~ggrlV~nait--------- 137 (187)
T COG2242 83 ---------VDNLEVVEGDAPEALP---DLPSPDAI----FIGGGGNIEEILEAAWERLKPGGRLVANAIT--------- 137 (187)
T ss_pred ---------CCcEEEEeccchHhhc---CCCCCCEE----EECCCCCHHHHHHHHHHHcCcCCeEEEEeec---------
Confidence 1347889999877543 12379988 566568899999999999999999993 110
Q ss_pred CCCCCccccCCHHHHHHHHHhCCC-EEEE
Q 015966 345 GQEDEMSIELSLEDVKRVALHYGF-EFEK 372 (397)
Q Consensus 345 g~~~~~~ieLS~EEl~~ll~~~GF-eii~ 372 (397)
.=+.-.+.+.+++.|| +++.
T Consensus 138 --------lE~~~~a~~~~~~~g~~ei~~ 158 (187)
T COG2242 138 --------LETLAKALEALEQLGGREIVQ 158 (187)
T ss_pred --------HHHHHHHHHHHHHcCCceEEE
Confidence 1134455667788999 6665
|
|
| >PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases | Back alignment and domain information |
|---|
Probab=98.37 E-value=1.9e-06 Score=81.45 Aligned_cols=111 Identities=27% Similarity=0.326 Sum_probs=81.5
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccccc
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~S 250 (397)
++..|.+.. +..+||++|+|+|.-+..||+. +-.|+.+|.+..+...|+-.+.++
T Consensus 36 lL~~l~~~~------~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~a---------------- 93 (205)
T PF01596_consen 36 LLQMLVRLT------RPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKA---------------- 93 (205)
T ss_dssp HHHHHHHHH------T-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHhc------CCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhc----------------
Confidence 566665543 4569999999999999999975 568999999999998887554332
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCC---CCCCCCccEEEEeeccCCh-hhHHHHHHHHHHhccC
Q 015966 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD---PSQVGAWDAVVTCFFIDTA-HNIVEYIEIISRILKD 326 (397)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~---~~~~~~fD~VvT~FFIDta-~Ni~~yi~~I~~~LKP 326 (397)
+...++.++.||..++... ....++||.| |||.. .+-.+|++.+.++|+|
T Consensus 94 ----------------------g~~~~I~~~~gda~~~l~~l~~~~~~~~fD~V----FiDa~K~~y~~y~~~~~~ll~~ 147 (205)
T PF01596_consen 94 ----------------------GLDDRIEVIEGDALEVLPELANDGEEGQFDFV----FIDADKRNYLEYFEKALPLLRP 147 (205)
T ss_dssp ----------------------TGGGGEEEEES-HHHHHHHHHHTTTTTSEEEE----EEESTGGGHHHHHHHHHHHEEE
T ss_pred ----------------------CCCCcEEEEEeccHhhHHHHHhccCCCceeEE----EEcccccchhhHHHHHhhhccC
Confidence 1123478899998875320 0113689998 67755 4577899999999999
Q ss_pred CcEEEE
Q 015966 327 GGVWIN 332 (397)
Q Consensus 327 GG~wIN 332 (397)
||+.|-
T Consensus 148 ggvii~ 153 (205)
T PF01596_consen 148 GGVIIA 153 (205)
T ss_dssp EEEEEE
T ss_pred CeEEEE
Confidence 999994
|
The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A .... |
| >KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.36 E-value=4.7e-06 Score=81.70 Aligned_cols=141 Identities=18% Similarity=0.253 Sum_probs=94.6
Q ss_pred hhHHHHHHHHHHhcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHH
Q 015966 145 VDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMM 224 (397)
Q Consensus 145 ~dkv~stL~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML 224 (397)
++-...-.++-|.-|.... ...|+..|..+ | ...-|-|.|||-++||. ..-..|...|+-.
T Consensus 149 fdlYH~gfr~QV~kWP~nP-------ld~ii~~ik~r-~-----~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a--- 209 (325)
T KOG3045|consen 149 FDLYHAGFRSQVKKWPENP-------LDVIIRKIKRR-P-----KNIVIADFGCGEAKIAS---SERHKVHSFDLVA--- 209 (325)
T ss_pred HHHHHHHHHHHHHhCCCCh-------HHHHHHHHHhC-c-----CceEEEecccchhhhhh---ccccceeeeeeec---
Confidence 4444455566677788652 23477777764 2 45678899999999975 2222333333211
Q ss_pred HHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe
Q 015966 225 ICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC 304 (397)
Q Consensus 225 ~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~ 304 (397)
.+=.+++.||+.+- -.+++.|++|.|
T Consensus 210 ---------------------------------------------------~~~~V~~cDm~~vP---l~d~svDvaV~C 235 (325)
T KOG3045|consen 210 ---------------------------------------------------VNERVIACDMRNVP---LEDESVDVAVFC 235 (325)
T ss_pred ---------------------------------------------------CCCceeeccccCCc---CccCcccEEEee
Confidence 01234678988863 357999999999
Q ss_pred eccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 305 FFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 305 FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
.-|.- .|+.++|++++++|||||+|-- ..+ .+-.-+.-.+.+.++++||++.+.
T Consensus 236 LSLMg-tn~~df~kEa~RiLk~gG~l~I-AEv-------------~SRf~dv~~f~r~l~~lGF~~~~~ 289 (325)
T KOG3045|consen 236 LSLMG-TNLADFIKEANRILKPGGLLYI-AEV-------------KSRFSDVKGFVRALTKLGFDVKHK 289 (325)
T ss_pred Hhhhc-ccHHHHHHHHHHHhccCceEEE-Eeh-------------hhhcccHHHHHHHHHHcCCeeeeh
Confidence 87664 4799999999999999998652 011 123345566889999999999874
|
|
| >PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2 | Back alignment and domain information |
|---|
Probab=98.36 E-value=3.7e-06 Score=79.67 Aligned_cols=138 Identities=17% Similarity=0.151 Sum_probs=89.6
Q ss_pred hHHHHHHHHHHhcccccCh--------------hHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-
Q 015966 146 DKVRCIIRNIVRDWAAEGK--------------TERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL- 210 (397)
Q Consensus 146 dkv~stL~q~~RDWS~eG~--------------~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~- 210 (397)
..|..+++.+-|++--... .++..+-+.+...+.+.+.- +++.+||++|||+|.++.-||.+
T Consensus 18 ~~v~~A~~~VpR~~Fvp~~~~~~aY~d~~l~i~~~~~is~P~~~a~~l~~L~l---~pg~~VLeIGtGsGY~aAlla~lv 94 (209)
T PF01135_consen 18 PRVLDAFRAVPREDFVPPAFRDLAYEDRPLPIGCGQTISAPSMVARMLEALDL---KPGDRVLEIGTGSGYQAALLAHLV 94 (209)
T ss_dssp HHHHHHHHHS-GGGCSSCGGGGGTTSSS-EEEETTEEE--HHHHHHHHHHTTC----TT-EEEEES-TTSHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHhCchhhhcCCCCCCCeeecceeechHHHHHHHHHHHHhc---CCCCEEEEecCCCcHHHHHHHHhc
Confidence 5677888888887643211 11222334566666666542 37889999999999999999988
Q ss_pred C--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccc
Q 015966 211 G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEV 288 (397)
Q Consensus 211 G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~el 288 (397)
| ..|.++|....++..|+-.|.... ..++.++.||...-
T Consensus 95 g~~g~Vv~vE~~~~l~~~A~~~l~~~~---------------------------------------~~nv~~~~gdg~~g 135 (209)
T PF01135_consen 95 GPVGRVVSVERDPELAERARRNLARLG---------------------------------------IDNVEVVVGDGSEG 135 (209)
T ss_dssp STTEEEEEEESBHHHHHHHHHHHHHHT---------------------------------------THSEEEEES-GGGT
T ss_pred CccceEEEECccHHHHHHHHHHHHHhc---------------------------------------cCceeEEEcchhhc
Confidence 4 369999999999988875553210 01377899997654
Q ss_pred cCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE-ec
Q 015966 289 YSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN-LG 334 (397)
Q Consensus 289 y~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN-~G 334 (397)
+. ....||+|+...-....+ ..+.+.||+||++|- ++
T Consensus 136 ~~---~~apfD~I~v~~a~~~ip------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 136 WP---EEAPFDRIIVTAAVPEIP------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp TG---GG-SEEEEEESSBBSS--------HHHHHTEEEEEEEEEEES
T ss_pred cc---cCCCcCEEEEeeccchHH------HHHHHhcCCCcEEEEEEc
Confidence 32 357899999876655433 345667999999996 45
|
1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A .... |
| >PLN02476 O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.33 E-value=4.5e-06 Score=82.46 Aligned_cols=117 Identities=17% Similarity=0.291 Sum_probs=83.5
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccccc
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~S 250 (397)
++..|.+.. +..+||++|+|+|.-+..+|+. +-.|+++|.+..++..|+-.+.++
T Consensus 109 lL~~L~~~~------~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~a---------------- 166 (278)
T PLN02476 109 LLAMLVQIL------GAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELA---------------- 166 (278)
T ss_pred HHHHHHHhc------CCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc----------------
Confidence 555555543 4579999999999999999973 346999999999998877433221
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCC---CCCCCCccEEEEeeccCCh-hhHHHHHHHHHHhccC
Q 015966 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD---PSQVGAWDAVVTCFFIDTA-HNIVEYIEIISRILKD 326 (397)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~---~~~~~~fD~VvT~FFIDta-~Ni~~yi~~I~~~LKP 326 (397)
+...++.++.||..++... ....++||+| |||.. .+-.+|++.+.++|||
T Consensus 167 ----------------------Gl~~~I~li~GdA~e~L~~l~~~~~~~~FD~V----FIDa~K~~Y~~y~e~~l~lL~~ 220 (278)
T PLN02476 167 ----------------------GVSHKVNVKHGLAAESLKSMIQNGEGSSYDFA----FVDADKRMYQDYFELLLQLVRV 220 (278)
T ss_pred ----------------------CCCCcEEEEEcCHHHHHHHHHhcccCCCCCEE----EECCCHHHHHHHHHHHHHhcCC
Confidence 1123478889998775320 0013689977 67865 4578999999999999
Q ss_pred CcEEEEecCCcch
Q 015966 327 GGVWINLGPLLYH 339 (397)
Q Consensus 327 GG~wIN~GPLlYh 339 (397)
||++|- -..+|+
T Consensus 221 GGvIV~-DNvL~~ 232 (278)
T PLN02476 221 GGVIVM-DNVLWH 232 (278)
T ss_pred CcEEEE-ecCccC
Confidence 999983 335564
|
|
| >COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.33 E-value=2.9e-06 Score=79.57 Aligned_cols=127 Identities=19% Similarity=0.193 Sum_probs=82.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
.+.+|||+|||||+|+.-.+-+| ..|.|+|+...++.+++-..+ +
T Consensus 45 ~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~---~------------------------------- 90 (198)
T COG2263 45 EGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAE---E------------------------------- 90 (198)
T ss_pred CCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHH---h-------------------------------
Confidence 56689999999999999999999 689999999999998772211 0
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--e--ccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhc
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--F--FIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADL 343 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--F--FIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~ 343 (397)
...++.++.+|..++. ..+|.|+++ | -.-.+ | ..++....++- -..|....
T Consensus 91 ------l~g~v~f~~~dv~~~~------~~~dtvimNPPFG~~~rha-D-r~Fl~~Ale~s----------~vVYsiH~- 145 (198)
T COG2263 91 ------LLGDVEFVVADVSDFR------GKFDTVIMNPPFGSQRRHA-D-RPFLLKALEIS----------DVVYSIHK- 145 (198)
T ss_pred ------hCCceEEEEcchhhcC------CccceEEECCCCccccccC-C-HHHHHHHHHhh----------heEEEeec-
Confidence 1234788999987763 578888876 3 11111 1 12222222211 12232111
Q ss_pred cCCCCCccccCCHHHHHHHHHhCCCEEEEEe----ecCCCCCCC
Q 015966 344 YGQEDEMSIELSLEDVKRVALHYGFEFEKEK----TIETTYTTN 383 (397)
Q Consensus 344 ~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~----~i~~~Y~~d 383 (397)
--+.+-+++.....||++.... .+...|...
T Consensus 146 ---------a~~~~f~~~~~~~~G~~v~~~~~~~~~iP~~y~fH 180 (198)
T COG2263 146 ---------AGSRDFVEKFAADLGGTVTHIERARFPIPRTYPFH 180 (198)
T ss_pred ---------cccHHHHHHHHHhcCCeEEEEEEEEEecCccCchh
Confidence 1278899999999999988743 345555433
|
|
| >PRK14903 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.32 E-value=3.1e-06 Score=87.98 Aligned_cols=102 Identities=12% Similarity=0.102 Sum_probs=70.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|..+..+|.+ +..|+|+|+|..||..++-.+... ++
T Consensus 237 ~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~--------------------------g~--- 287 (431)
T PRK14903 237 PGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRL--------------------------KL--- 287 (431)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHc--------------------------CC---
Confidence 5679999999999999998886 568999999999998766332211 00
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEE---ee---ccCChh---------hH-------HHHHHHHHHh
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---CF---FIDTAH---------NI-------VEYIEIISRI 323 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT---~F---FIDta~---------Ni-------~~yi~~I~~~ 323 (397)
.++.+..+|..++.. ...++||.|+. |. .+...+ ++ .+.|+.+++.
T Consensus 288 ----------~~v~~~~~Da~~l~~--~~~~~fD~Vl~DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~ 355 (431)
T PRK14903 288 ----------SSIEIKIADAERLTE--YVQDTFDRILVDAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKL 355 (431)
T ss_pred ----------CeEEEEECchhhhhh--hhhccCCEEEECCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 125677788766421 12467999985 21 121111 22 3568999999
Q ss_pred ccCCcEEE
Q 015966 324 LKDGGVWI 331 (397)
Q Consensus 324 LKPGG~wI 331 (397)
|||||++|
T Consensus 356 LkpGG~Lv 363 (431)
T PRK14903 356 LEKGGILL 363 (431)
T ss_pred cCCCCEEE
Confidence 99999987
|
|
| >PRK14902 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=5e-06 Score=86.28 Aligned_cols=102 Identities=17% Similarity=0.132 Sum_probs=70.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|..+..+|++ +-.|+|+|+|..|+..++..+... +
T Consensus 250 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~--------------------------g---- 299 (444)
T PRK14902 250 GGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRL--------------------------G---- 299 (444)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc--------------------------C----
Confidence 5679999999999999999986 358999999999997766322110 0
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe---e---ccC---------ChhhH-------HHHHHHHHHh
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---F---FID---------TAHNI-------VEYIEIISRI 323 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~---F---FID---------ta~Ni-------~~yi~~I~~~ 323 (397)
. .++.++.+|+.++.. ...+.||+|+.- . .+. +..++ .+.|+.+.++
T Consensus 300 --------~-~~v~~~~~D~~~~~~--~~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~ 368 (444)
T PRK14902 300 --------L-TNIETKALDARKVHE--KFAEKFDKILVDAPCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQY 368 (444)
T ss_pred --------C-CeEEEEeCCcccccc--hhcccCCEEEEcCCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 0 126778889877521 112689999852 1 011 11222 3579999999
Q ss_pred ccCCcEEE
Q 015966 324 LKDGGVWI 331 (397)
Q Consensus 324 LKPGG~wI 331 (397)
|||||.+|
T Consensus 369 LkpGG~lv 376 (444)
T PRK14902 369 LKKGGILV 376 (444)
T ss_pred cCCCCEEE
Confidence 99999998
|
|
| >PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.6e-06 Score=83.18 Aligned_cols=204 Identities=20% Similarity=0.221 Sum_probs=104.8
Q ss_pred HHHHHHHHhcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHH-
Q 015966 149 RCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMIC- 226 (397)
Q Consensus 149 ~stL~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~- 226 (397)
+.=|...++.=+.... | ++.....+..|.+.|.... .++.++||+|||.--.-..-|..=| +++..|++..=+..
T Consensus 19 ~~Yl~~yY~~~~~~~~-~-~~~~~~~L~~l~~~f~~g~-~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el 95 (256)
T PF01234_consen 19 RAYLDTYYSFPSGDDA-E-DEILLFFLKNLHETFSSGG-VKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREEL 95 (256)
T ss_dssp HHHHHHHHSTSSS-CH-H-HHHHHHHHHHHHHHHHTSS-S-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHH
T ss_pred HHHHHHhcCCCccCcc-c-chhHHHHHHHHHHHhCccC-cCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHH
Confidence 3345556644333222 2 2244456666777775432 3577999999998444322343444 58999999876653
Q ss_pred HHhhhhcccccCccccccccccccCCCC-------cccCccccccCCCCCCCCCCCCcceeEecccccccCCCC---CCC
Q 015966 227 SSFILNHTETAGEWNIYPWIHSNCNSLS-------DSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPS---QVG 296 (397)
Q Consensus 227 s~fiLn~~~~~~~~~IyPfi~~~Sn~~s-------~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~---~~~ 296 (397)
-+|+ +.. .+-.| -|++..-++... .+.++|.. | =.++..|.+..-..+. ...
T Consensus 96 ~kWl-~~~-~a~DW--s~~~~~v~~lEg~~~~~~e~e~~lR~~-V-------------k~Vv~cDV~~~~pl~~~~~~p~ 157 (256)
T PF01234_consen 96 EKWL-RKE-GAFDW--SPFWKYVCELEGKREKWEEKEEKLRRA-V-------------KQVVPCDVTQPNPLDPPVVLPP 157 (256)
T ss_dssp HHHH-TT--TS--T--HHHHHHHHHHTTSSSGHHHHHHHHHHH-E-------------EEEEE--TTSSSTTTTS-SS-S
T ss_pred HHHH-CCC-CCCCc--cHHHHHHHhccCCcchhhhHHHHHHHh-h-------------ceEEEeeccCCCCCCccccCcc
Confidence 3333 222 22222 233222222111 11222220 0 1245556554221111 124
Q ss_pred CccEEEEeeccCCh-hhHHH---HHHHHHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 297 AWDAVVTCFFIDTA-HNIVE---YIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 297 ~fD~VvT~FFIDta-~Ni~~---yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
+||+|+|+|.++.+ +++.+ .++.|.++|||||.+|-.|-|--.+-. .|+..-..+-|+.|.|++.++++||+++.
T Consensus 158 ~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l~~t~Y~-vG~~~F~~l~l~ee~v~~al~~aG~~i~~ 236 (256)
T PF01234_consen 158 KFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVLGSTYYM-VGGHKFPCLPLNEEFVREALEEAGFDIED 236 (256)
T ss_dssp SEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEESS-SEEE-ETTEEEE---B-HHHHHHHHHHTTEEEEE
T ss_pred chhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEcCceeEE-ECCEecccccCCHHHHHHHHHHcCCEEEe
Confidence 69999999988754 34555 477778899999999965443211111 12111125679999999999999999998
Q ss_pred Ee
Q 015966 373 EK 374 (397)
Q Consensus 373 e~ 374 (397)
.+
T Consensus 237 ~~ 238 (256)
T PF01234_consen 237 LE 238 (256)
T ss_dssp EE
T ss_pred cc
Confidence 66
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A .... |
| >KOG3010 consensus Methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.29 E-value=2.5e-06 Score=82.69 Aligned_cols=95 Identities=18% Similarity=0.279 Sum_probs=67.6
Q ss_pred eEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCC
Q 015966 192 ACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPAS 271 (397)
Q Consensus 192 rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~ 271 (397)
.++|+|||+|--++-+|..--+|.|.|.|..||-++. .+. +..+ +|
T Consensus 36 ~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~---k~~--~~~y---------~~-------------------- 81 (261)
T KOG3010|consen 36 LAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAK---KHP--PVTY---------CH-------------------- 81 (261)
T ss_pred eEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhh---cCC--Cccc---------cc--------------------
Confidence 7899999999778888888668999999999997554 111 0000 00
Q ss_pred CCCCCcceeEecccccccCCCCCCCCccEEEEe---eccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 272 AGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 272 ~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~---FFIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
...+|...++.++.+ .+++.|.|++. .+.| +.++++.++++|||.|-.|
T Consensus 82 ----t~~~ms~~~~v~L~g---~e~SVDlI~~Aqa~HWFd----le~fy~~~~rvLRk~Gg~i 133 (261)
T KOG3010|consen 82 ----TPSTMSSDEMVDLLG---GEESVDLITAAQAVHWFD----LERFYKEAYRVLRKDGGLI 133 (261)
T ss_pred ----CCccccccccccccC---CCcceeeehhhhhHHhhc----hHHHHHHHHHHcCCCCCEE
Confidence 114666677777765 26899999864 2333 5689999999999877555
|
|
| >PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=98.28 E-value=5.9e-06 Score=82.10 Aligned_cols=39 Identities=23% Similarity=0.328 Sum_probs=36.7
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015966 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (397)
+.+|||+|||+|.++..||++|..|+|+|+|..|+..|+
T Consensus 174 ~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~ 212 (315)
T PRK03522 174 PRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAK 212 (315)
T ss_pred CCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence 468999999999999999999999999999999998776
|
|
| >KOG2899 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.28 E-value=1.3e-05 Score=77.99 Aligned_cols=183 Identities=16% Similarity=0.211 Sum_probs=108.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccc-------cCCCCcccCc
Q 015966 189 SPPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN-------CNSLSDSDQL 259 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~-------Sn~~s~~~ql 259 (397)
.+..+||+||-.|-|+..||+. |- .|.|+|+....+--|+.-+.+-....-.+.--|++++ |+ ....+..
T Consensus 58 ~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~~~~~~~~~~~~~~~~~~~~~~is~-~~~a~~a 136 (288)
T KOG2899|consen 58 EPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFPCDHETEVSGKFPASFGVQFGPISQ-RNEADRA 136 (288)
T ss_pred CcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccccccccccccCCCccccccccccccc-ccccccc
Confidence 4568999999999999999997 43 4899999999988777543322110000000011111 11 1111111
Q ss_pred cccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee---c--cC-ChhhHHHHHHHHHHhccCCcEEEEe
Q 015966 260 RPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---F--ID-TAHNIVEYIEIISRILKDGGVWINL 333 (397)
Q Consensus 260 r~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F---F--ID-ta~Ni~~yi~~I~~~LKPGG~wIN~ 333 (397)
-...+||-.. -...+.-+-..||++. ....||+|++.= + |. -.+-+.++|..|+++|.|||++| +
T Consensus 137 ~t~~~p~n~~---f~~~n~vle~~dfl~~-----~~~~fDiIlcLSiTkWIHLNwgD~GL~~ff~kis~ll~pgGiLv-v 207 (288)
T KOG2899|consen 137 FTTDFPDNVW---FQKENYVLESDDFLDM-----IQPEFDIILCLSITKWIHLNWGDDGLRRFFRKISSLLHPGGILV-V 207 (288)
T ss_pred ccccCCcchh---cccccEEEecchhhhh-----ccccccEEEEEEeeeeEecccccHHHHHHHHHHHHhhCcCcEEE-E
Confidence 1122332110 1233455666677753 257899998652 2 32 23459999999999999999999 6
Q ss_pred cCCcch-hhhc------cCCCCCccccCCHHHHHHHHHh--CCCEEEEEee-cCCCCCC
Q 015966 334 GPLLYH-FADL------YGQEDEMSIELSLEDVKRVALH--YGFEFEKEKT-IETTYTT 382 (397)
Q Consensus 334 GPLlYh-~~d~------~g~~~~~~ieLS~EEl~~ll~~--~GFeii~e~~-i~~~Y~~ 382 (397)
-|--|. |... .+ .....+.|.+|....++.+ .||+-.++.. +.+.|.+
T Consensus 208 EPQpWksY~kaar~~e~~~-~ny~~i~lkp~~f~~~l~q~~vgle~~e~~~~~~~~~sk 265 (288)
T KOG2899|consen 208 EPQPWKSYKKAARRSEKLA-ANYFKIFLKPEDFEDWLNQIVVGLESVEDLGLIVSAASK 265 (288)
T ss_pred cCCchHHHHHHHHHHHHhh-cCccceecCHHHHHhhhhhhhhheeeeccccccccccCc
Confidence 777664 2211 01 1123578999999998885 5887666543 5555543
|
|
| >PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=98.26 E-value=6.9e-06 Score=77.22 Aligned_cols=39 Identities=23% Similarity=0.005 Sum_probs=33.3
Q ss_pred CCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHH
Q 015966 190 PPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSS 228 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~ 228 (397)
+.+|||+|||+|.++.+++.+| -.|+++|.+..++..++
T Consensus 54 ~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~ 93 (199)
T PRK10909 54 DARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLI 93 (199)
T ss_pred CCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHH
Confidence 4589999999999999866565 58999999999987665
|
|
| >PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=9.9e-06 Score=78.30 Aligned_cols=52 Identities=13% Similarity=0.109 Sum_probs=42.6
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (397)
+++.+.+.... .++.+|||+|||+|.++..|++++..|+|+|++..|+..++
T Consensus 17 ~~~~iv~~~~~---~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~ 68 (258)
T PRK14896 17 VVDRIVEYAED---TDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLR 68 (258)
T ss_pred HHHHHHHhcCC---CCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHH
Confidence 55555554432 25679999999999999999999999999999999987654
|
|
| >TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase | Back alignment and domain information |
|---|
Probab=98.23 E-value=7.7e-06 Score=79.40 Aligned_cols=101 Identities=27% Similarity=0.218 Sum_probs=68.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|..+..||++ +-.|+|+|.|..|+..++..++.. .+
T Consensus 71 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~--------------------------g~--- 121 (264)
T TIGR00446 71 PPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRC--------------------------GV--- 121 (264)
T ss_pred CcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc--------------------------CC---
Confidence 5679999999999999999875 237999999999997665333211 00
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEE---ee---cc---------CChhhH-------HHHHHHHHHh
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---CF---FI---------DTAHNI-------VEYIEIISRI 323 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT---~F---FI---------Dta~Ni-------~~yi~~I~~~ 323 (397)
.++.++.+|...+.. ..+.||+|+. |. .+ -+..++ .+.|+.+.++
T Consensus 122 ----------~~v~~~~~D~~~~~~---~~~~fD~Vl~D~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~ 188 (264)
T TIGR00446 122 ----------LNVAVTNFDGRVFGA---AVPKFDAILLDAPCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDA 188 (264)
T ss_pred ----------CcEEEecCCHHHhhh---hccCCCEEEEcCCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 125566677655321 2356999985 22 11 112222 3589999999
Q ss_pred ccCCcEEE
Q 015966 324 LKDGGVWI 331 (397)
Q Consensus 324 LKPGG~wI 331 (397)
|||||++|
T Consensus 189 lkpgG~lv 196 (264)
T TIGR00446 189 LKPGGVLV 196 (264)
T ss_pred cCCCCEEE
Confidence 99999988
|
|
| >PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes | Back alignment and domain information |
|---|
Probab=98.21 E-value=6.5e-06 Score=83.06 Aligned_cols=155 Identities=16% Similarity=0.217 Sum_probs=90.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||-|....-..+.+. .+.|+|+|..-|.-|+--.+...+...-. . ....++
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~--------------~---~~~~f~-- 122 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSK--------------Q---YRFDFI-- 122 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-H--------------T---SEECCE--
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccc--------------c---ccccch--
Confidence 678999999999998888888875 58899999999876653332111100000 0 000110
Q ss_pred CCCCCCCCCcceeEeccccc-----ccCCCCCCCCccEEEEee----ccCChhhHHHHHHHHHHhccCCcEEEEecC---
Q 015966 268 HPASAGITEGFSMCGGDFVE-----VYSDPSQVGAWDAVVTCF----FIDTAHNIVEYIEIISRILKDGGVWINLGP--- 335 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~e-----ly~~~~~~~~fD~VvT~F----FIDta~Ni~~yi~~I~~~LKPGG~wIN~GP--- 335 (397)
..++.+|... .+. ....+||+|-+.| ...+.+.....|+.|.+.|||||+||..-|
T Consensus 123 ----------a~f~~~D~f~~~l~~~~~--~~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~~ 190 (331)
T PF03291_consen 123 ----------AEFIAADCFSESLREKLP--PRSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDSD 190 (331)
T ss_dssp ----------EEEEESTTCCSHHHCTSS--STTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-HH
T ss_pred ----------hheeccccccchhhhhcc--ccCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCHH
Confidence 2445555432 222 1236999886555 256777788899999999999999995222
Q ss_pred --------------------Ccch--hhhc-----cCC----------CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 336 --------------------LLYH--FADL-----YGQ----------EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 336 --------------------LlYh--~~d~-----~g~----------~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
-+|. |... +|. .+-..+-..++-+.+++++.|++++...
T Consensus 191 ~i~~~l~~~~~~~~~~~~gN~~y~I~f~~~~~~~~fG~~Y~F~L~~~v~~~~EYlV~~~~~~~la~eyGLeLV~~~ 266 (331)
T PF03291_consen 191 EIVKRLREKKSNSEKKKFGNSVYSIEFDSDDFFPPFGAKYDFYLEDAVDDCPEYLVPFDFFVKLAKEYGLELVEKK 266 (331)
T ss_dssp HHHCCHHC-EEECCCSCSETSSEEEEESCCSS--CTTEEEEEEETTCSSCEEEE---HHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHhhcccccccccCCccEEEEecccCCCCCCCcEEEEEecCcCCCCceEEeeHHHHHHHHHHcCCEEEEeC
Confidence 1221 1110 010 0001122479999999999999998754
|
The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A. |
| >PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=98.20 E-value=4.4e-06 Score=78.46 Aligned_cols=124 Identities=15% Similarity=0.165 Sum_probs=67.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc---------C--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCccc
Q 015966 189 SPPACLVPGAGLGRLALEISHL---------G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSD 257 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---------G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~ 257 (397)
...||+..||++|--++-||.. + +.+.|.|+|..+|..|+- -+||-- ...+. ..
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~-----------G~Y~~~-~~~~~---~~ 95 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARA-----------GIYPER-SLRGL---PP 95 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHH-----------TEEEGG-GGTTS----H
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHh-----------CCCCHH-HHhhh---HH
Confidence 6789999999999876666533 3 689999999999987761 122210 00000 00
Q ss_pred Ccccccc-CCCC-CC--CCCCCCcceeEecccccccCCCCCCCCccEEEEee---ccCChhhHHHHHHHHHHhccCCcEE
Q 015966 258 QLRPVSI-PDIH-PA--SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVW 330 (397)
Q Consensus 258 qlr~v~i-PDv~-p~--~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yi~~I~~~LKPGG~w 330 (397)
.++.--| +... .. ...+...+.|...|..+... ..+.||+|+|-. |.|.. ...+.++.+++.|+|||++
T Consensus 96 ~~~~ryf~~~~~~~~~v~~~lr~~V~F~~~NL~~~~~---~~~~fD~I~CRNVlIYF~~~-~~~~vl~~l~~~L~pgG~L 171 (196)
T PF01739_consen 96 AYLRRYFTERDGGGYRVKPELRKMVRFRRHNLLDPDP---PFGRFDLIFCRNVLIYFDPE-TQQRVLRRLHRSLKPGGYL 171 (196)
T ss_dssp HHHHHHEEEE-CCCTTE-HHHHTTEEEEE--TT-S---------EEEEEE-SSGGGS-HH-HHHHHHHHHGGGEEEEEEE
T ss_pred HHHHHhccccCCCceeEChHHcCceEEEecccCCCCc---ccCCccEEEecCEEEEeCHH-HHHHHHHHHHHHcCCCCEE
Confidence 0000000 0000 00 00123458999999888222 358999998753 44543 3678999999999999999
Q ss_pred E
Q 015966 331 I 331 (397)
Q Consensus 331 I 331 (397)
+
T Consensus 172 ~ 172 (196)
T PF01739_consen 172 F 172 (196)
T ss_dssp E
T ss_pred E
Confidence 9
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A. |
| >PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed | Back alignment and domain information |
|---|
Probab=98.20 E-value=1.1e-05 Score=78.79 Aligned_cols=53 Identities=17% Similarity=0.119 Sum_probs=43.0
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (397)
.+++.+.+.+.. .++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++
T Consensus 29 ~i~~~i~~~l~~---~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~ 81 (272)
T PRK00274 29 NILDKIVDAAGP---QPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILA 81 (272)
T ss_pred HHHHHHHHhcCC---CCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHH
Confidence 355655555432 25679999999999999999999999999999999987654
|
|
| >KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.20 E-value=8.1e-06 Score=82.10 Aligned_cols=137 Identities=18% Similarity=0.190 Sum_probs=84.5
Q ss_pred cccChhHHhhc--------hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhh
Q 015966 160 AAEGKTERDQC--------YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFI 230 (397)
Q Consensus 160 S~eG~~ER~~~--------y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fi 230 (397)
..-|.+.|+.+ -.+|-..|.+.|. .+...||++|||-|....-.-+.|. ...|+|++..-+.-|+--
T Consensus 84 ~e~g~e~Rq~S~Ii~lRnfNNwIKs~LI~~y~----~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~R 159 (389)
T KOG1975|consen 84 TEVGREKRQRSPIIFLRNFNNWIKSVLINLYT----KRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKR 159 (389)
T ss_pred HHHhHhhhccCceeehhhhhHHHHHHHHHHHh----ccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHH
Confidence 44677777652 1233344444443 2556799999999999888777776 588999998776544422
Q ss_pred hhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEeccccc-----ccCCCCCCCCccEEEEee
Q 015966 231 LNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVE-----VYSDPSQVGAWDAVVTCF 305 (397)
Q Consensus 231 Ln~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~e-----ly~~~~~~~~fD~VvT~F 305 (397)
.+... .+.+ ...|| ..|++||-+. ++. +.+.+||+|-|-|
T Consensus 160 Yrdm~------------------~r~~---~~~f~------------a~f~~~Dc~~~~l~d~~e--~~dp~fDivScQF 204 (389)
T KOG1975|consen 160 YRDMK------------------NRFK---KFIFT------------AVFIAADCFKERLMDLLE--FKDPRFDIVSCQF 204 (389)
T ss_pred HHHHH------------------hhhh---cccce------------eEEEEeccchhHHHHhcc--CCCCCcceeeeee
Confidence 21110 0000 01111 3566666442 221 2244599987766
Q ss_pred c----cCChhhHHHHHHHHHHhccCCcEEEEecC
Q 015966 306 F----IDTAHNIVEYIEIISRILKDGGVWINLGP 335 (397)
Q Consensus 306 F----IDta~Ni~~yi~~I~~~LKPGG~wIN~GP 335 (397)
. ..|.....-.++.+.++|||||+||..-|
T Consensus 205 ~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTiP 238 (389)
T KOG1975|consen 205 AFHYAFETEESARIALRNVAKCLKPGGVFIGTIP 238 (389)
T ss_pred eEeeeeccHHHHHHHHHHHHhhcCCCcEEEEecC
Confidence 2 44656677899999999999999996444
|
|
| >COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.18 E-value=2.1e-05 Score=76.73 Aligned_cols=117 Identities=23% Similarity=0.219 Sum_probs=86.3
Q ss_pred hchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHHhhhhcccccCccccccc
Q 015966 169 QCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPW 245 (397)
Q Consensus 169 ~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPf 245 (397)
..|++=+.+|..+.. ..++.+||+.|.|.|.|+..||.. | =+|++.|+-..++..|+.-++..
T Consensus 77 iIyPKD~~~I~~~~g---i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~----------- 142 (256)
T COG2519 77 IIYPKDAGYIVARLG---ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEF----------- 142 (256)
T ss_pred eecCCCHHHHHHHcC---CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHh-----------
Confidence 455555566655443 347899999999999999999963 3 27999999999998887544321
Q ss_pred cccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhcc
Q 015966 246 IHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILK 325 (397)
Q Consensus 246 i~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LK 325 (397)
.+.+.+.+..||+.+... .+.||+| |||.. +.-++++.++++||
T Consensus 143 ---------------------------~l~d~v~~~~~Dv~~~~~----~~~vDav----~LDmp-~PW~~le~~~~~Lk 186 (256)
T COG2519 143 ---------------------------GLGDRVTLKLGDVREGID----EEDVDAV----FLDLP-DPWNVLEHVSDALK 186 (256)
T ss_pred ---------------------------ccccceEEEecccccccc----ccccCEE----EEcCC-ChHHHHHHHHHHhC
Confidence 111225667799888543 2489998 57874 57899999999999
Q ss_pred CCcEEEEecC
Q 015966 326 DGGVWINLGP 335 (397)
Q Consensus 326 PGG~wIN~GP 335 (397)
|||.++-+-|
T Consensus 187 pgg~~~~y~P 196 (256)
T COG2519 187 PGGVVVVYSP 196 (256)
T ss_pred CCcEEEEEcC
Confidence 9999997655
|
|
| >COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.18 E-value=1.7e-05 Score=79.04 Aligned_cols=117 Identities=21% Similarity=0.227 Sum_probs=79.1
Q ss_pred HHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCC
Q 015966 176 EELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (397)
Q Consensus 176 ~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~ 253 (397)
+.|.+.+|.. .+.+|||+|||.|-|+..||+..= .++-+|.|+..+..|+.-+. .|.
T Consensus 148 ~lLl~~l~~~---~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~----~N~-------------- 206 (300)
T COG2813 148 RLLLETLPPD---LGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLA----ANG-------------- 206 (300)
T ss_pred HHHHHhCCcc---CCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHH----HcC--------------
Confidence 4556666643 345999999999999999999974 89999999999998883321 010
Q ss_pred CcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--ec--cCChhhH-HHHHHHHHHhccCCc
Q 015966 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FF--IDTAHNI-VEYIEIISRILKDGG 328 (397)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FF--IDta~Ni-~~yi~~I~~~LKPGG 328 (397)
.++..+...|. |.. ..++||+|+|+ |. .++..++ .+.|+...+.||+||
T Consensus 207 ---------------------~~~~~v~~s~~---~~~--v~~kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gG 260 (300)
T COG2813 207 ---------------------VENTEVWASNL---YEP--VEGKFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGG 260 (300)
T ss_pred ---------------------CCccEEEEecc---ccc--ccccccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCC
Confidence 01112344443 331 23599999998 54 4555443 378999999999999
Q ss_pred EEEE--ecCCcch
Q 015966 329 VWIN--LGPLLYH 339 (397)
Q Consensus 329 ~wIN--~GPLlYh 339 (397)
-+-- -|.|-|.
T Consensus 261 eL~iVan~~l~y~ 273 (300)
T COG2813 261 ELWIVANRHLPYE 273 (300)
T ss_pred EEEEEEcCCCChH
Confidence 5432 2555553
|
|
| >TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.1e-05 Score=83.30 Aligned_cols=112 Identities=13% Similarity=0.105 Sum_probs=72.2
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
++++.+.+.+.. .++.+|||+|||+|.++..||+.+..|+|+|.|..|+..|+.-+.. +
T Consensus 279 ~l~~~~~~~l~~---~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~----~-------------- 337 (431)
T TIGR00479 279 KLVDRALEALEL---QGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAEL----N-------------- 337 (431)
T ss_pred HHHHHHHHHhcc---CCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHH----h--------------
Confidence 345555544421 2456899999999999999999999999999999999877632210 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccC-CCCCCCCccEEEEeeccCChhh--HHHHHHHHHHhccCCcE
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTCFFIDTAHN--IVEYIEIISRILKDGGV 329 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~-~~~~~~~fD~VvT~FFIDta~N--i~~yi~~I~~~LKPGG~ 329 (397)
. -.++.++.||+.++.. .+...+.||+|+ +|.... ..+.++.+.+ |+|+|+
T Consensus 338 --------~-------------~~nv~~~~~d~~~~l~~~~~~~~~~D~vi----~dPPr~G~~~~~l~~l~~-l~~~~i 391 (431)
T TIGR00479 338 --------G-------------IANVEFLAGTLETVLPKQPWAGQIPDVLL----LDPPRKGCAAEVLRTIIE-LKPERI 391 (431)
T ss_pred --------C-------------CCceEEEeCCHHHHHHHHHhcCCCCCEEE----ECcCCCCCCHHHHHHHHh-cCCCEE
Confidence 0 0136788999876321 011235799986 354321 2345555554 888876
Q ss_pred EE
Q 015966 330 WI 331 (397)
Q Consensus 330 wI 331 (397)
..
T Consensus 392 vy 393 (431)
T TIGR00479 392 VY 393 (431)
T ss_pred EE
Confidence 43
|
This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA. |
| >PLN02589 caffeoyl-CoA O-methyltransferase | Back alignment and domain information |
|---|
Probab=98.15 E-value=1.8e-05 Score=76.98 Aligned_cols=117 Identities=17% Similarity=0.220 Sum_probs=84.2
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccccc
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~S 250 (397)
++..|.+.. +..+||++|.++|.=+..+|+. +-.|+.+|....+...|+-.+.++
T Consensus 70 lL~~l~~~~------~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~a---------------- 127 (247)
T PLN02589 70 FLNMLLKLI------NAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKA---------------- 127 (247)
T ss_pred HHHHHHHHh------CCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHC----------------
Confidence 666666654 4568999999999999998864 458999999999988877544321
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCC--CC--CCCCccEEEEeeccCCh-hhHHHHHHHHHHhcc
Q 015966 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD--PS--QVGAWDAVVTCFFIDTA-HNIVEYIEIISRILK 325 (397)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~--~~--~~~~fD~VvT~FFIDta-~Ni~~yi~~I~~~LK 325 (397)
+...++.++.||..++... +. ..++||+| |||.. .+-.+|++.+.++|+
T Consensus 128 ----------------------g~~~~I~~~~G~a~e~L~~l~~~~~~~~~fD~i----FiDadK~~Y~~y~~~~l~ll~ 181 (247)
T PLN02589 128 ----------------------GVAHKIDFREGPALPVLDQMIEDGKYHGTFDFI----FVDADKDNYINYHKRLIDLVK 181 (247)
T ss_pred ----------------------CCCCceEEEeccHHHHHHHHHhccccCCcccEE----EecCCHHHhHHHHHHHHHhcC
Confidence 1123478899998875321 00 13689988 67755 346689999999999
Q ss_pred CCcEEEEecCCcch
Q 015966 326 DGGVWINLGPLLYH 339 (397)
Q Consensus 326 PGG~wIN~GPLlYh 339 (397)
|||++| +-..+|+
T Consensus 182 ~GGviv-~DNvl~~ 194 (247)
T PLN02589 182 VGGVIG-YDNTLWN 194 (247)
T ss_pred CCeEEE-EcCCCCC
Confidence 999988 2335664
|
|
| >PTZ00338 dimethyladenosine transferase-like protein; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=1.8e-05 Score=78.55 Aligned_cols=97 Identities=14% Similarity=0.185 Sum_probs=67.3
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~ 253 (397)
+++.+.+.... .++.+||++|||+|.|+..|++++-.|+|+|++..|+..++-.+...
T Consensus 24 i~~~Iv~~~~~---~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~------------------- 81 (294)
T PTZ00338 24 VLDKIVEKAAI---KPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNS------------------- 81 (294)
T ss_pred HHHHHHHhcCC---CCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhc-------------------
Confidence 44555444321 25679999999999999999999999999999999997665222100
Q ss_pred CcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--eccCChhhHHHHH
Q 015966 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTAHNIVEYI 317 (397)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta~Ni~~yi 317 (397)
....++.++.+|+.++.. ..||+||.+ |+|.+.- +...+
T Consensus 82 -------------------~~~~~v~ii~~Dal~~~~-----~~~d~VvaNlPY~Istpi-l~~ll 122 (294)
T PTZ00338 82 -------------------PLASKLEVIEGDALKTEF-----PYFDVCVANVPYQISSPL-VFKLL 122 (294)
T ss_pred -------------------CCCCcEEEEECCHhhhcc-----cccCEEEecCCcccCcHH-HHHHH
Confidence 001247889999987532 468998876 6677642 44444
|
|
| >PRK14901 16S rRNA methyltransferase B; Provisional | Back alignment and domain information |
|---|
Probab=98.11 E-value=1.2e-05 Score=83.42 Aligned_cols=104 Identities=17% Similarity=0.156 Sum_probs=71.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||.|||.|..+..||++. -.|+|+|.|..|+..++..++.. ++
T Consensus 252 ~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~--------------------------g~--- 302 (434)
T PRK14901 252 PGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRL--------------------------GL--- 302 (434)
T ss_pred CcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHc--------------------------CC---
Confidence 56799999999999999999862 37999999999997665322210 00
Q ss_pred CCCCCCCCCCCcceeEecccccccCC-CCCCCCccEEEE---ee------------ccCChhh-------HHHHHHHHHH
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVT---CF------------FIDTAHN-------IVEYIEIISR 322 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~-~~~~~~fD~VvT---~F------------FIDta~N-------i~~yi~~I~~ 322 (397)
.++.++.+|+.++... +...++||+|+. |. +..+..+ ..+.++.+++
T Consensus 303 ----------~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~ 372 (434)
T PRK14901 303 ----------KSIKILAADSRNLLELKPQWRGYFDRILLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAP 372 (434)
T ss_pred ----------CeEEEEeCChhhcccccccccccCCEEEEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 1256777887765310 012468999985 21 0111222 2467999999
Q ss_pred hccCCcEEE
Q 015966 323 ILKDGGVWI 331 (397)
Q Consensus 323 ~LKPGG~wI 331 (397)
+|||||++|
T Consensus 373 ~lkpgG~lv 381 (434)
T PRK14901 373 LLKPGGTLV 381 (434)
T ss_pred hcCCCCEEE
Confidence 999999998
|
|
| >TIGR00095 RNA methyltransferase, RsmD family | Back alignment and domain information |
|---|
Probab=98.10 E-value=2.7e-05 Score=72.32 Aligned_cols=40 Identities=20% Similarity=-0.057 Sum_probs=36.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~ 228 (397)
.+.+|||++||+|.++.+++.+|. .|+++|.+..++..++
T Consensus 49 ~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~ 89 (189)
T TIGR00095 49 QGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLK 89 (189)
T ss_pred CCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Confidence 356899999999999999999998 7999999999987665
|
This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases. |
| >PRK10611 chemotaxis methyltransferase CheR; Provisional | Back alignment and domain information |
|---|
Probab=98.09 E-value=2.4e-05 Score=77.69 Aligned_cols=121 Identities=11% Similarity=0.115 Sum_probs=75.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc----------CCeEEEEeCCHHHHHHHHhhhhcccccCccccccc----------ccc
Q 015966 189 SPPACLVPGAGLGRLALEISHL----------GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPW----------IHS 248 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~----------Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPf----------i~~ 248 (397)
...||+..||.||--++-||.. .+.|.|.|+|..+|..|+- .+||- ...
T Consensus 115 ~~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~-----------G~Y~~~~~r~~p~~~~~r 183 (287)
T PRK10611 115 GEYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARS-----------GIYRQEELKTLSPQQLQR 183 (287)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHh-----------CCCCHHHHhcCCHHHHHH
Confidence 3589999999999877766653 3679999999999987761 12331 000
Q ss_pred ccCCC-CcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--e-ccCChhhHHHHHHHHHHhc
Q 015966 249 NCNSL-SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--F-FIDTAHNIVEYIEIISRIL 324 (397)
Q Consensus 249 ~Sn~~-s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--F-FIDta~Ni~~yi~~I~~~L 324 (397)
+=... ...+ ....+ .+ .+...+.|...|..+.. .+ ..+.||+|+|- + |++. +.....++.+++.|
T Consensus 184 yF~~~~~~~~--~~~~v---~~---~lr~~V~F~~~NL~~~~-~~-~~~~fD~I~cRNvliyF~~-~~~~~vl~~l~~~L 252 (287)
T PRK10611 184 YFMRGTGPHE--GLVRV---RQ---ELANYVDFQQLNLLAKQ-WA-VPGPFDAIFCRNVMIYFDK-TTQERILRRFVPLL 252 (287)
T ss_pred HcccccCCCC--ceEEE---Ch---HHHccCEEEcccCCCCC-Cc-cCCCcceeeHhhHHhcCCH-HHHHHHHHHHHHHh
Confidence 00000 0000 00010 00 12345888998887621 11 24789999983 2 3444 34778999999999
Q ss_pred cCCcEEE
Q 015966 325 KDGGVWI 331 (397)
Q Consensus 325 KPGG~wI 331 (397)
||||+++
T Consensus 253 ~pgG~L~ 259 (287)
T PRK10611 253 KPDGLLF 259 (287)
T ss_pred CCCcEEE
Confidence 9999887
|
|
| >PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases | Back alignment and domain information |
|---|
Probab=98.07 E-value=3.2e-06 Score=88.89 Aligned_cols=147 Identities=18% Similarity=0.228 Sum_probs=88.0
Q ss_pred HHHHHHhhCCCCCCCC-CCeEEEecCCCChhHHHHHHcCCeEEEE---eCCHHHHHHHHhhhhcccccCccccccccccc
Q 015966 174 ILEELDALFPNRSKES-PPACLVPGAGLGRLALEISHLGFISQGN---EFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~-~~rVLvPGCGlGRLa~eLA~~Gf~V~Gn---D~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~ 249 (397)
-++.|.+.+|...... -..+||.|||+|.++..|..+|--+..+ |-.... .+|+|.
T Consensus 101 Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~q---vqfale----------------- 160 (506)
T PF03141_consen 101 YIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQ---VQFALE----------------- 160 (506)
T ss_pred HHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchh---hhhhhh-----------------
Confidence 4556666666421122 3367999999999999999998654222 111111 111111
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeec-cCChhhHHHHHHHHHHhccCCc
Q 015966 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF-IDTAHNIVEYIEIISRILKDGG 328 (397)
Q Consensus 250 Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FF-IDta~Ni~~yi~~I~~~LKPGG 328 (397)
|+ +|.+ +. +.|.- .+|+.++.||+|=|.-+ +.=..+---|+-.|.|+|+|||
T Consensus 161 ----------RG--vpa~----------~~-~~~s~----rLPfp~~~fDmvHcsrc~i~W~~~~g~~l~evdRvLRpGG 213 (506)
T PF03141_consen 161 ----------RG--VPAM----------IG-VLGSQ----RLPFPSNAFDMVHCSRCLIPWHPNDGFLLFEVDRVLRPGG 213 (506)
T ss_pred ----------cC--cchh----------hh-hhccc----cccCCccchhhhhcccccccchhcccceeehhhhhhccCc
Confidence 22 1211 11 11221 23455799999977643 3222222358999999999999
Q ss_pred EEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 329 VWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 329 ~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
+||--||..|.-.+ ...+-.++++..+.+.+-|+.+.++
T Consensus 214 yfv~S~ppv~~r~~-------~~~~~~~~~~~~l~~~lCW~~va~~ 252 (506)
T PF03141_consen 214 YFVLSGPPVYQRTD-------EDLEEEWNAMEDLAKSLCWKKVAEK 252 (506)
T ss_pred eEEecCCcccccch-------HHHHHHHHHHHHHHHHHHHHHheee
Confidence 99999998881110 1223457788888888889887754
|
; GO: 0008168 methyltransferase activity |
| >COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.7e-05 Score=78.98 Aligned_cols=123 Identities=21% Similarity=0.184 Sum_probs=83.2
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccc
Q 015966 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (397)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~ 249 (397)
+..|.++...-.+... +++..||||=||||....|..-.|..|.|+|++..|+.-++--|+
T Consensus 180 s~~P~lAR~mVNLa~v--~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~----------------- 240 (347)
T COG1041 180 SMDPRLARAMVNLARV--KRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLE----------------- 240 (347)
T ss_pred CcCHHHHHHHHHHhcc--ccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhh-----------------
Confidence 4556666655544432 467799999999999999999999999999999999976652221
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-c-cCC----h--hh-HHHHHHHH
Q 015966 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-F-IDT----A--HN-IVEYIEII 320 (397)
Q Consensus 250 Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-F-IDt----a--~N-i~~yi~~I 320 (397)
...+++. ..+...|.+.+- + .++++|+|+|=- | ..+ . .. ..+.|+++
T Consensus 241 -----------~y~i~~~----------~~~~~~Da~~lp-l--~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~ 296 (347)
T COG1041 241 -----------YYGIEDY----------PVLKVLDATNLP-L--RDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESA 296 (347)
T ss_pred -----------hhCcCce----------eEEEecccccCC-C--CCCccceEEecCCCCcccccccccHHHHHHHHHHHH
Confidence 1111111 122333776653 2 245799999852 2 111 1 12 45789999
Q ss_pred HHhccCCcEEEEecC
Q 015966 321 SRILKDGGVWINLGP 335 (397)
Q Consensus 321 ~~~LKPGG~wIN~GP 335 (397)
+.+||+||+++-..|
T Consensus 297 ~evLk~gG~~vf~~p 311 (347)
T COG1041 297 SEVLKPGGRIVFAAP 311 (347)
T ss_pred HHHhhcCcEEEEecC
Confidence 999999999986444
|
|
| >TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB | Back alignment and domain information |
|---|
Probab=98.06 E-value=3e-05 Score=79.08 Aligned_cols=132 Identities=13% Similarity=0.143 Sum_probs=82.8
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCC
Q 015966 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p 269 (397)
+.+|||+|||+|.++..+|.+|..|+|+|+|..++..++..+.. + .
T Consensus 234 ~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~----~----------------------~-------- 279 (374)
T TIGR02085 234 VTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQM----L----------------------G-------- 279 (374)
T ss_pred CCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHH----c----------------------C--------
Confidence 45899999999999999999999999999999999877632210 0 0
Q ss_pred CCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhh--HHHHHHHHHHhccCCcEEEE-ecCCcchhhhccCC
Q 015966 270 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN--IVEYIEIISRILKDGGVWIN-LGPLLYHFADLYGQ 346 (397)
Q Consensus 270 ~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N--i~~yi~~I~~~LKPGG~wIN-~GPLlYh~~d~~g~ 346 (397)
. .++.+.++|+.++.. ...++||+|+. |+... ..+.++.|.+ |+|+++..- ..|-.
T Consensus 280 ----~-~~~~~~~~d~~~~~~--~~~~~~D~vi~----DPPr~G~~~~~l~~l~~-~~p~~ivyvsc~p~T--------- 338 (374)
T TIGR02085 280 ----L-DNLSFAALDSAKFAT--AQMSAPELVLV----NPPRRGIGKELCDYLSQ-MAPKFILYSSCNAQT--------- 338 (374)
T ss_pred ----C-CcEEEEECCHHHHHH--hcCCCCCEEEE----CCCCCCCcHHHHHHHHh-cCCCeEEEEEeCHHH---------
Confidence 0 136789999876432 11246998864 44322 2244555543 688765552 33321
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEEeecC-CCCCCCcccc
Q 015966 347 EDEMSIELSLEDVKRVALHYGFEFEKEKTIE-TTYTTNPRSM 387 (397)
Q Consensus 347 ~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~-~~Y~~d~~sm 387 (397)
=..|++.+ .||++.+-...+ =++|..-+++
T Consensus 339 --------laRDl~~L---~gy~l~~~~~~DmFPqT~HvE~v 369 (374)
T TIGR02085 339 --------MAKDIAEL---SGYQIERVQLFDMFPHTSHYEVL 369 (374)
T ss_pred --------HHHHHHHh---cCceEEEEEEeccCCCCCcEEEE
Confidence 12445544 599999865332 3344444433
|
This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA. |
| >PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein | Back alignment and domain information |
|---|
Probab=98.06 E-value=7e-05 Score=71.65 Aligned_cols=140 Identities=19% Similarity=0.156 Sum_probs=97.5
Q ss_pred chHHHHHHHHhhCCCC-CCCCCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHHhhhhcccccCccccccccc
Q 015966 170 CYKPILEELDALFPNR-SKESPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIH 247 (397)
Q Consensus 170 ~y~pIl~~L~~~~p~~-~~~~~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~ 247 (397)
+-+.++++|.+..... ..+.+.++|++||=....+.- ..| |+|+.+|+..
T Consensus 31 SSK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s--~~~~fdvt~IDLns-------------------------- 82 (219)
T PF11968_consen 31 SSKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACS--TSGWFDVTRIDLNS-------------------------- 82 (219)
T ss_pred hhHHHHHHhhhhccccccccccceEEeecccCCCCccc--ccCceeeEEeecCC--------------------------
Confidence 4456888888766422 123468999999965443322 222 4677777643
Q ss_pred cccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee---ccCChhhHHHHHHHHHHhc
Q 015966 248 SNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRIL 324 (397)
Q Consensus 248 ~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yi~~I~~~L 324 (397)
. .-.+.+.||.+.--+....+.||+|+... |+.++...-+.++.+++.|
T Consensus 83 ----------------------~------~~~I~qqDFm~rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL 134 (219)
T PF11968_consen 83 ----------------------Q------HPGILQQDFMERPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFL 134 (219)
T ss_pred ----------------------C------CCCceeeccccCCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHh
Confidence 0 01346789988532223468999999875 7888888999999999999
Q ss_pred cCCcE-----EEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 325 KDGGV-----WINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 325 KPGG~-----wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
||+|. +.-+=|+--+ .+ +--++.+-++.+++..||+.++.+
T Consensus 135 ~~~g~~~~~~LFlVlP~~Cv-~N--------SRy~~~~~l~~im~~LGf~~~~~~ 180 (219)
T PF11968_consen 135 KPPGLSLFPSLFLVLPLPCV-TN--------SRYMTEERLREIMESLGFTRVKYK 180 (219)
T ss_pred CCCCccCcceEEEEeCchHh-hc--------ccccCHHHHHHHHHhCCcEEEEEE
Confidence 99999 5545555433 11 446899999999999999999854
|
|
| >TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB | Back alignment and domain information |
|---|
Probab=98.06 E-value=2.8e-05 Score=80.43 Aligned_cols=41 Identities=12% Similarity=-0.100 Sum_probs=35.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHh
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSF 229 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~f 229 (397)
++.+|||+|||+|..+..+|++ +-.|+|+|+|..|+..++-
T Consensus 238 ~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~ 280 (426)
T TIGR00563 238 NEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYE 280 (426)
T ss_pred CCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 5679999999999999999886 2589999999999987763
|
The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles. |
| >PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00018 Score=71.77 Aligned_cols=210 Identities=17% Similarity=0.148 Sum_probs=123.0
Q ss_pred cccccccCCCCCCCCCCCCCcccCCCCC--chhhHHHHHHHHHHhcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCe
Q 015966 115 NDFTDSNGNASSPACDWLDPSIQLNVPL--ADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPA 192 (397)
Q Consensus 115 ~~~~~~~g~~~~~~~~w~~~~~~~~~~~--~d~dkv~stL~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~r 192 (397)
..++.+.|..|.++-+|.=... |. .-+.|. +=+.+..-=--.|-..|..-...+|..-...+.. ...+.+
T Consensus 67 i~lG~~tGFDSGstLDYVYrN~----p~G~~~~Grl--iDr~yLnaiGWrGIR~Rk~~l~~~i~~ai~~L~~--~g~pvr 138 (311)
T PF12147_consen 67 IRLGLETGFDSGSTLDYVYRNQ----PQGKGPLGRL--IDRNYLNAIGWRGIRQRKVHLEELIRQAIARLRE--QGRPVR 138 (311)
T ss_pred eeechhcCCCCcchHhHHhcCC----CCCcchHHHH--HHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHh--cCCceE
Confidence 4566677877777666553322 11 111111 1112211111257777776444333332222222 136899
Q ss_pred EEEecCCCChhHHHHHHcC----CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 193 CLVPGAGLGRLALEISHLG----FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 193 VLvPGCGlGRLa~eLA~~G----f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
|||+.||.||..++..... -.|.-+|+|..-+...+-+...- +
T Consensus 139 IlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~--------------------------g------- 185 (311)
T PF12147_consen 139 ILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAER--------------------------G------- 185 (311)
T ss_pred EEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHc--------------------------C-------
Confidence 9999999999999986653 35889999998887766443210 0
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEe----eccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhc-
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC----FFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADL- 343 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~----FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~- 343 (397)
+.+-++|.++|.++........-..++++.+ +|-|.. -|..-|.-++.+|.|||++|-.| .-||-.-.
T Consensus 186 -----L~~i~~f~~~dAfd~~~l~~l~p~P~l~iVsGL~ElF~Dn~-lv~~sl~gl~~al~pgG~lIyTg-QPwHPQle~ 258 (311)
T PF12147_consen 186 -----LEDIARFEQGDAFDRDSLAALDPAPTLAIVSGLYELFPDND-LVRRSLAGLARALEPGGYLIYTG-QPWHPQLEM 258 (311)
T ss_pred -----CccceEEEecCCCCHhHhhccCCCCCEEEEecchhhCCcHH-HHHHHHHHHHHHhCCCcEEEEcC-CCCCcchHH
Confidence 1111578888887642221223445666654 254543 36678999999999999999544 23553221
Q ss_pred -------c-CCCCCccc--cCCHHHHHHHHHhCCCEEEEEe
Q 015966 344 -------Y-GQEDEMSI--ELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 344 -------~-g~~~~~~i--eLS~EEl~~ll~~~GFeii~e~ 374 (397)
. ++.+ ++ .-|..|+.++++++||+=+..+
T Consensus 259 IAr~LtsHr~g~~--WvMRrRsq~EmD~Lv~~aGF~K~~q~ 297 (311)
T PF12147_consen 259 IARVLTSHRDGKA--WVMRRRSQAEMDQLVEAAGFEKIDQR 297 (311)
T ss_pred HHHHHhcccCCCc--eEEEecCHHHHHHHHHHcCCchhhhe
Confidence 0 1111 22 2499999999999999855543
|
It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily. |
| >TIGR00478 tly hemolysin TlyA family protein | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00015 Score=69.71 Aligned_cols=38 Identities=16% Similarity=0.109 Sum_probs=34.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMIC 226 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~ 226 (397)
++.+|||+|||+|.++..|+++|. .|+|+|+|..||..
T Consensus 75 ~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 75 KNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred CCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 567899999999999999999986 69999999999853
|
Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479). |
| >PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2 | Back alignment and domain information |
|---|
Probab=97.99 E-value=1.7e-05 Score=74.17 Aligned_cols=101 Identities=24% Similarity=0.343 Sum_probs=65.9
Q ss_pred CeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 191 PACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
.-+|++|||.|+....+|++ +..+.|+|++..-+..+. .++... .
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~---~~~~~~-----------------------~------- 65 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKAL---RKAEKR-----------------------G------- 65 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHH---HHHHHH-----------------------T-------
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHH---HHHHhh-----------------------c-------
Confidence 38999999999999999998 678999999998776443 211110 0
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCC----hh--h-H--HHHHHHHHHhccCCcEEE
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT----AH--N-I--VEYIEIISRILKDGGVWI 331 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDt----a~--N-i--~~yi~~I~~~LKPGG~wI 331 (397)
..++.++.+|...+...-..+++.|.|.-.| -|. .+ . + .++++.++++|||||.+-
T Consensus 66 ------l~Nv~~~~~da~~~l~~~~~~~~v~~i~i~F-PDPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~ 130 (195)
T PF02390_consen 66 ------LKNVRFLRGDARELLRRLFPPGSVDRIYINF-PDPWPKKRHHKRRLVNPEFLELLARVLKPGGELY 130 (195)
T ss_dssp ------TSSEEEEES-CTTHHHHHSTTTSEEEEEEES------SGGGGGGSTTSHHHHHHHHHHEEEEEEEE
T ss_pred ------ccceEEEEccHHHHHhhcccCCchheEEEeC-CCCCcccchhhhhcCCchHHHHHHHHcCCCCEEE
Confidence 1247788888776321111257888886655 332 11 1 1 268999999999999775
|
1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B .... |
| >PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase | Back alignment and domain information |
|---|
Probab=97.95 E-value=4.2e-05 Score=70.40 Aligned_cols=103 Identities=19% Similarity=0.286 Sum_probs=70.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeE-----------EEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCccc
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFIS-----------QGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSD 257 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V-----------~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~ 257 (397)
++..||||=||+|.+..|-|..|..+ .|.|++..|+..|+-.+..+
T Consensus 28 ~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~a----------------------- 84 (179)
T PF01170_consen 28 PGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAA----------------------- 84 (179)
T ss_dssp TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHT-----------------------
T ss_pred CCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhc-----------------------
Confidence 56789999999999999999887654 49999999998887443221
Q ss_pred CccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--e--ccCChhhHH----HHHHHHHHhccCCcE
Q 015966 258 QLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--F--FIDTAHNIV----EYIEIISRILKDGGV 329 (397)
Q Consensus 258 qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--F--FIDta~Ni~----~yi~~I~~~LKPGG~ 329 (397)
.....+.+..+|++++.. ..+.+|+|||. | -+.+...+. +.++.+.++|++..+
T Consensus 85 ---------------g~~~~i~~~~~D~~~l~~---~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v 146 (179)
T PF01170_consen 85 ---------------GVEDYIDFIQWDARELPL---PDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAV 146 (179)
T ss_dssp ---------------T-CGGEEEEE--GGGGGG---TTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEE
T ss_pred ---------------ccCCceEEEecchhhccc---ccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEE
Confidence 011236788999998752 35789999998 3 234333333 357888899999666
Q ss_pred EEE
Q 015966 330 WIN 332 (397)
Q Consensus 330 wIN 332 (397)
||-
T Consensus 147 ~l~ 149 (179)
T PF01170_consen 147 FLT 149 (179)
T ss_dssp EEE
T ss_pred EEE
Confidence 664
|
It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A. |
| >PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA [] | Back alignment and domain information |
|---|
Probab=97.93 E-value=5.1e-05 Score=73.84 Aligned_cols=153 Identities=18% Similarity=0.203 Sum_probs=96.3
Q ss_pred hcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHHhhhhc
Q 015966 157 RDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNH 233 (397)
Q Consensus 157 RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~ML~~s~fiLn~ 233 (397)
.+|..-=...-+..|++=+.+|..++.- +++.+||+-|.|.|.|+..||+. | =.|...|+....+..|+--+..
T Consensus 11 e~~~~~l~rrtQIiYpkD~~~I~~~l~i---~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~ 87 (247)
T PF08704_consen 11 ELWTLSLPRRTQIIYPKDISYILMRLDI---RPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFER 87 (247)
T ss_dssp HHHHHTS-SSS----HHHHHHHHHHTT-----TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHH
T ss_pred HHHHHhccCCcceeeCchHHHHHHHcCC---CCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHH
Confidence 3565444444467888888888776643 48899999999999999999975 2 2799999999998877632211
Q ss_pred ccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccc-cCCCCCCCCccEEEEeeccCChhh
Q 015966 234 TETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEV-YSDPSQVGAWDAVVTCFFIDTAHN 312 (397)
Q Consensus 234 ~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~el-y~~~~~~~~fD~VvT~FFIDta~N 312 (397)
+ .+..++.+..+|..+- +. ...++.+|+| |||.. +
T Consensus 88 ------~--------------------------------gl~~~v~~~~~Dv~~~g~~-~~~~~~~Dav----fLDlp-~ 123 (247)
T PF08704_consen 88 ------H--------------------------------GLDDNVTVHHRDVCEEGFD-EELESDFDAV----FLDLP-D 123 (247)
T ss_dssp ------T--------------------------------TCCTTEEEEES-GGCG--S-TT-TTSEEEE----EEESS-S
T ss_pred ------c--------------------------------CCCCCceeEecceeccccc-ccccCcccEE----EEeCC-C
Confidence 0 1123477888887542 11 1123678887 67864 4
Q ss_pred HHHHHHHHHHhc-cCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 313 IVEYIEIISRIL-KDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 313 i~~yi~~I~~~L-KPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
.-++|..+.++| ||||++..+-|-.= . ...+.+.|++.||..++
T Consensus 124 Pw~~i~~~~~~L~~~gG~i~~fsP~ie------------Q----v~~~~~~L~~~gf~~i~ 168 (247)
T PF08704_consen 124 PWEAIPHAKRALKKPGGRICCFSPCIE------------Q----VQKTVEALREHGFTDIE 168 (247)
T ss_dssp GGGGHHHHHHHE-EEEEEEEEEESSHH------------H----HHHHHHHHHHTTEEEEE
T ss_pred HHHHHHHHHHHHhcCCceEEEECCCHH------------H----HHHHHHHHHHCCCeeeE
Confidence 678999999999 89999997655321 1 12333455678998776
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A. |
| >PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2 | Back alignment and domain information |
|---|
Probab=97.91 E-value=5.5e-05 Score=73.16 Aligned_cols=107 Identities=18% Similarity=0.128 Sum_probs=74.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
+..+||++|-|.|.++.++.+.. -.|+.+|++..++.+++--+..... . .
T Consensus 76 ~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~---------------~--~----------- 127 (246)
T PF01564_consen 76 NPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSE---------------G--L----------- 127 (246)
T ss_dssp ST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHT---------------T--G-----------
T ss_pred CcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhcc---------------c--c-----------
Confidence 46799999999999999999886 4799999999999877633211100 0 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCC-CccEEEEeecc--CChhh--HHHHHHHHHHhccCCcEEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVG-AWDAVVTCFFI--DTAHN--IVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~-~fD~VvT~FFI--Dta~N--i~~yi~~I~~~LKPGG~wIN 332 (397)
..++++++.+|.+.+-. ...+ +||+|+.=.+- ..+.+ -.++++.+.++|+|||+++.
T Consensus 128 -------~d~r~~i~~~Dg~~~l~--~~~~~~yDvIi~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~ 189 (246)
T PF01564_consen 128 -------DDPRVRIIIGDGRKFLK--ETQEEKYDVIIVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVL 189 (246)
T ss_dssp -------GSTTEEEEESTHHHHHH--TSSST-EEEEEEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred -------CCCceEEEEhhhHHHHH--hccCCcccEEEEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEE
Confidence 01348889999887543 1234 89999875542 12222 24899999999999999994
|
5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B .... |
| >COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00016 Score=56.56 Aligned_cols=98 Identities=20% Similarity=0.241 Sum_probs=60.5
Q ss_pred EEEecCCCChhH--HHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCC
Q 015966 193 CLVPGAGLGRLA--LEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA 270 (397)
Q Consensus 193 VLvPGCGlGRLa--~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~ 270 (397)
||++|||+|+.. ..+...+..++|+|+|..|+..++..... . ..
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~-------------------------~~-------- 97 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-A-------------------------GL-------- 97 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-c-------------------------CC--------
Confidence 999999999954 44444456899999999998763211000 0 00
Q ss_pred CCCCCCcceeEeccccc-ccCCCCCC-CCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 271 SAGITEGFSMCGGDFVE-VYSDPSQV-GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 271 ~~~~~~~ls~~~GDF~e-ly~~~~~~-~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
..+.+..+|... ... ... ..||++.....+.... ....+..+.+.|||||.++.
T Consensus 98 -----~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~~~l~~~g~~~~ 153 (257)
T COG0500 98 -----GLVDFVVADALGGVLP--FEDSASFDLVISLLVLHLLP-PAKALRELLRVLKPGGRLVL 153 (257)
T ss_pred -----CceEEEEeccccCCCC--CCCCCceeEEeeeeehhcCC-HHHHHHHHHHhcCCCcEEEE
Confidence 002345555444 122 223 4799993322222111 67899999999999999985
|
|
| >COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00017 Score=68.74 Aligned_cols=110 Identities=17% Similarity=0.146 Sum_probs=76.2
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~ 253 (397)
+...+.+.+.. +++.+||++|||+|..|.-||+.+-.|.++|........|+-.|..
T Consensus 60 ~vA~m~~~L~~---~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~-------------------- 116 (209)
T COG2518 60 MVARMLQLLEL---KPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLET-------------------- 116 (209)
T ss_pred HHHHHHHHhCC---CCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHH--------------------
Confidence 44444444432 3678999999999999999999988999999999887766633321
Q ss_pred CcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE-
Q 015966 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN- 332 (397)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN- 332 (397)
.. + .++.+..||-..=+. ....||+|+..--.++.+ +...+-|||||++|-
T Consensus 117 --------lg----------~-~nV~v~~gDG~~G~~---~~aPyD~I~Vtaaa~~vP------~~Ll~QL~~gGrlv~P 168 (209)
T COG2518 117 --------LG----------Y-ENVTVRHGDGSKGWP---EEAPYDRIIVTAAAPEVP------EALLDQLKPGGRLVIP 168 (209)
T ss_pred --------cC----------C-CceEEEECCcccCCC---CCCCcCEEEEeeccCCCC------HHHHHhcccCCEEEEE
Confidence 11 1 237789999765443 357899987433333322 345568999999996
Q ss_pred ec
Q 015966 333 LG 334 (397)
Q Consensus 333 ~G 334 (397)
+|
T Consensus 169 vG 170 (209)
T COG2518 169 VG 170 (209)
T ss_pred Ec
Confidence 44
|
|
| >COG4122 Predicted O-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0001 Score=70.63 Aligned_cols=99 Identities=26% Similarity=0.339 Sum_probs=75.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCcccccc
Q 015966 189 SPPACLVPGAGLGRLALEISHL----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~----Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~i 264 (397)
+..+||++|.++|.=+..+|.. | .++.+|+.+.|...|+-.+..+
T Consensus 59 ~~k~iLEiGT~~GySal~mA~~l~~~g-~l~tiE~~~e~~~~A~~n~~~a------------------------------ 107 (219)
T COG4122 59 GPKRILEIGTAIGYSALWMALALPDDG-RLTTIERDEERAEIARENLAEA------------------------------ 107 (219)
T ss_pred CCceEEEeecccCHHHHHHHhhCCCCC-eEEEEeCCHHHHHHHHHHHHHc------------------------------
Confidence 5679999999999999988865 4 6999999999999888554332
Q ss_pred CCCCCCCCCCCCcceeEe-cccccccCCCCCCCCccEEEEeeccCChh-hHHHHHHHHHHhccCCcEEE
Q 015966 265 PDIHPASAGITEGFSMCG-GDFVEVYSDPSQVGAWDAVVTCFFIDTAH-NIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 265 PDv~p~~~~~~~~ls~~~-GDF~ely~~~~~~~~fD~VvT~FFIDta~-Ni~~yi~~I~~~LKPGG~wI 331 (397)
+..+.+.++. ||-.+.... ...++||+| |||.++ +-.+|++.+.++|||||+.|
T Consensus 108 --------g~~~~i~~~~~gdal~~l~~-~~~~~fDli----FIDadK~~yp~~le~~~~lLr~GGliv 163 (219)
T COG4122 108 --------GVDDRIELLLGGDALDVLSR-LLDGSFDLV----FIDADKADYPEYLERALPLLRPGGLIV 163 (219)
T ss_pred --------CCcceEEEEecCcHHHHHHh-ccCCCccEE----EEeCChhhCHHHHHHHHHHhCCCcEEE
Confidence 1112255666 688776531 235899998 788653 45689999999999999999
|
|
| >PLN02823 spermine synthase | Back alignment and domain information |
|---|
Probab=97.87 E-value=7.8e-05 Score=75.49 Aligned_cols=109 Identities=16% Similarity=0.226 Sum_probs=75.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
...+||++|+|.|.++.++.+.. -.|+.+|+...++.+++--+ |+.+ + . +
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~------------~~~~---~---------~--~-- 154 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHL------------TVNR---E---------A--F-- 154 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhc------------cccc---c---------c--c--
Confidence 45689999999999999998853 46999999999998776211 1100 0 0 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCC-----hhhH--HHHHH-HHHHhccCCcEEE-EecC
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT-----AHNI--VEYIE-IISRILKDGGVWI-NLGP 335 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDt-----a~Ni--~~yi~-~I~~~LKPGG~wI-N~GP 335 (397)
...++.++.+|.+.+-. ...++||+|+.=.+ |. +..+ .++++ .+.+.|+|||+++ +.++
T Consensus 155 -------~dprv~v~~~Da~~~L~--~~~~~yDvIi~D~~-dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q~~s 222 (336)
T PLN02823 155 -------CDKRLELIINDARAELE--KRDEKFDVIIGDLA-DPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQAGP 222 (336)
T ss_pred -------cCCceEEEEChhHHHHh--hCCCCccEEEecCC-CccccCcchhhccHHHHHHHHHHhcCCCcEEEEeccC
Confidence 01347889999887543 23578999986433 21 1111 36787 8999999999998 4554
|
|
| >TIGR00755 ksgA dimethyladenosine transferase | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00016 Score=69.44 Aligned_cols=52 Identities=13% Similarity=0.058 Sum_probs=42.5
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (397)
+++.+.+.... .++.+|||+|||+|.++..|++++..|+|+|.+..|+..++
T Consensus 17 i~~~i~~~~~~---~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~ 68 (253)
T TIGR00755 17 VIQKIVEAANV---LEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILR 68 (253)
T ss_pred HHHHHHHhcCC---CCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHH
Confidence 55555554432 25679999999999999999999999999999999987654
|
Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase |
| >PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00011 Score=69.63 Aligned_cols=93 Identities=15% Similarity=0.253 Sum_probs=67.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
+..+|||+|+|.|.++..|+++ +-+++..|+ +.++..++ +
T Consensus 100 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~-------~------------------------------ 141 (241)
T PF00891_consen 100 GFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAK-------E------------------------------ 141 (241)
T ss_dssp TSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHH-------H------------------------------
T ss_pred CccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhccc-------c------------------------------
Confidence 4568999999999999999988 677888888 55542211 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCC--cEEEEe
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDG--GVWINL 333 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPG--G~wIN~ 333 (397)
.+++.++.|||++-. | . +|+|+-..+|+ ..+.....|+.+++.|+|| |.+|-+
T Consensus 142 --------~~rv~~~~gd~f~~~--P---~-~D~~~l~~vLh~~~d~~~~~iL~~~~~al~pg~~g~llI~ 198 (241)
T PF00891_consen 142 --------ADRVEFVPGDFFDPL--P---V-ADVYLLRHVLHDWSDEDCVKILRNAAAALKPGKDGRLLII 198 (241)
T ss_dssp --------TTTEEEEES-TTTCC--S---S-ESEEEEESSGGGS-HHHHHHHHHHHHHHSEECTTEEEEEE
T ss_pred --------ccccccccccHHhhh--c---c-ccceeeehhhhhcchHHHHHHHHHHHHHhCCCCCCeEEEE
Confidence 134889999998533 2 3 99999876653 5566889999999999999 988853
|
The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A .... |
| >KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.79 E-value=8.7e-05 Score=75.19 Aligned_cols=100 Identities=19% Similarity=0.232 Sum_probs=69.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
+...|||.|||||-|...-|+.|. .|.|+|.|.-+ ..|+-+.+. |.+
T Consensus 60 ~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~----N~~--------------------------- 107 (346)
T KOG1499|consen 60 KDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKD----NGL--------------------------- 107 (346)
T ss_pred CCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHh----cCc---------------------------
Confidence 567999999999999999999998 59999999865 444433321 111
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee---ccCChhh-HHHHHHHHHHhccCCcEEE
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHN-IVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~N-i~~yi~~I~~~LKPGG~wI 331 (397)
..-+.++.|...++ ..| .++.|+|++-+ |+=- ++ +-.+|-.=-+.|||||+..
T Consensus 108 -------~~ii~vi~gkvEdi-~LP--~eKVDiIvSEWMGy~Ll~-EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 108 -------EDVITVIKGKVEDI-ELP--VEKVDIIVSEWMGYFLLY-ESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred -------cceEEEeecceEEE-ecC--ccceeEEeehhhhHHHHH-hhhhhhhhhhhhhccCCCceEc
Confidence 11267788887777 334 58899999863 3221 22 2234444458899999987
|
|
| >COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00025 Score=70.31 Aligned_cols=105 Identities=18% Similarity=0.161 Sum_probs=76.8
Q ss_pred CeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 191 PACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
.+||++|-|.|..++++.+.. -+++.+|+...++..|+.-+-. .++. .+
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~---------------~~~~------------~~-- 128 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPE---------------PSGG------------AD-- 128 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccC---------------cccc------------cC--
Confidence 599999999999999999998 5799999999999887732210 0000 00
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeec--cCChhhH--HHHHHHHHHhccCCcEEEE
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF--IDTAHNI--VEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FF--IDta~Ni--~~yi~~I~~~LKPGG~wIN 332 (397)
.+++.++.+|-.++-. ...++||+|+.--+ .-.++++ .++++.++++|||+|+++.
T Consensus 129 ------dpRv~i~i~Dg~~~v~--~~~~~fDvIi~D~tdp~gp~~~Lft~eFy~~~~~~L~~~Gi~v~ 188 (282)
T COG0421 129 ------DPRVEIIIDDGVEFLR--DCEEKFDVIIVDSTDPVGPAEALFTEEFYEGCRRALKEDGIFVA 188 (282)
T ss_pred ------CCceEEEeccHHHHHH--hCCCcCCEEEEcCCCCCCcccccCCHHHHHHHHHhcCCCcEEEE
Confidence 1347888888887643 22358999986433 2344443 4799999999999999995
|
|
| >PRK00536 speE spermidine synthase; Provisional | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00019 Score=70.53 Aligned_cols=98 Identities=14% Similarity=0.217 Sum_probs=68.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
+..|||++|-|-|..++|+.|.--+|+-+|+...++.+++- ..|.++. ...
T Consensus 72 ~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~------------~lP~~~~------------~~~----- 122 (262)
T PRK00536 72 ELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFIS------------FFPHFHE------------VKN----- 122 (262)
T ss_pred CCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHH------------HCHHHHH------------hhc-----
Confidence 56899999999999999999986699999999999987762 1232221 001
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
..++.++. .+.+ ...++||+|+.= ...+ .++++.++++|+|||++|.
T Consensus 123 ------DpRv~l~~-~~~~-----~~~~~fDVIIvD----s~~~-~~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 123 ------NKNFTHAK-QLLD-----LDIKKYDLIICL----QEPD-IHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred ------CCCEEEee-hhhh-----ccCCcCCEEEEc----CCCC-hHHHHHHHHhcCCCcEEEE
Confidence 11244443 1221 123789999853 1111 4788999999999999997
|
|
| >TIGR03439 methyl_EasF probable methyltransferase domain, EasF family | Back alignment and domain information |
|---|
Probab=97.77 E-value=0.00073 Score=68.09 Aligned_cols=117 Identities=9% Similarity=-0.002 Sum_probs=69.6
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHH------HHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccc
Q 015966 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEI------SHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPW 245 (397)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eL------A~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPf 245 (397)
+.-...|.+.++ ++..|+++|||.||-+.-| +..++.-.++|+|..+|..+.--|
T Consensus 64 ~~~~~~Ia~~i~-----~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L-------------- 124 (319)
T TIGR03439 64 KKHSSDIAASIP-----SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAEL-------------- 124 (319)
T ss_pred HHHHHHHHHhcC-----CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhh--------------
Confidence 334445555554 4558999999999985432 223567789999999997554211
Q ss_pred cccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccC-CCC--CCCCccEEEEe---e-ccCChhhHHHHHH
Q 015966 246 IHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS-DPS--QVGAWDAVVTC---F-FIDTAHNIVEYIE 318 (397)
Q Consensus 246 i~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~-~~~--~~~~fD~VvT~---F-FIDta~Ni~~yi~ 318 (397)
+.-.+|.+. +.-+.|||.+... .+. ......+|+-. + -. +......+++
T Consensus 125 --------------~~~~~p~l~---------v~~l~gdy~~~l~~l~~~~~~~~~r~~~flGSsiGNf-~~~ea~~fL~ 180 (319)
T TIGR03439 125 --------------PLGNFSHVR---------CAGLLGTYDDGLAWLKRPENRSRPTTILWLGSSIGNF-SRPEAAAFLA 180 (319)
T ss_pred --------------hhccCCCeE---------EEEEEecHHHHHhhcccccccCCccEEEEeCccccCC-CHHHHHHHHH
Confidence 111223321 3447788866421 111 12234444321 1 12 3345678999
Q ss_pred HHHH-hccCCcEEE
Q 015966 319 IISR-ILKDGGVWI 331 (397)
Q Consensus 319 ~I~~-~LKPGG~wI 331 (397)
.|++ .|+|||.++
T Consensus 181 ~~~~~~l~~~d~lL 194 (319)
T TIGR03439 181 GFLATALSPSDSFL 194 (319)
T ss_pred HHHHhhCCCCCEEE
Confidence 9999 999998887
|
This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781). |
| >PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2 | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00016 Score=71.00 Aligned_cols=122 Identities=17% Similarity=0.181 Sum_probs=71.5
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHH---------cCCeEEEEeCCHHHHHHHHhhhhcccccCccccc
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISH---------LGFISQGNEFSYYMMICSSFILNHTETAGEWNIY 243 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~---------~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~Iy 243 (397)
.|.+.+.+.+.. .++.+||||+||+|.+..++.+ ....+.|+|++..++..|..-+- .
T Consensus 33 ~i~~l~~~~~~~---~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~--l-------- 99 (311)
T PF02384_consen 33 EIVDLMVKLLNP---KKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLL--L-------- 99 (311)
T ss_dssp HHHHHHHHHHTT----TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHH--H--------
T ss_pred HHHHHHHhhhhc---cccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhh--h--------
Confidence 355666665532 2566899999999999888776 46789999999999877653210 0
Q ss_pred cccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--eccC-------------
Q 015966 244 PWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFID------------- 308 (397)
Q Consensus 244 Pfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFID------------- 308 (397)
+.+. ...+.+..+|.+.-... .....||+|+++ |-..
T Consensus 100 ----------------~~~~-----------~~~~~i~~~d~l~~~~~-~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~ 151 (311)
T PF02384_consen 100 ----------------HGID-----------NSNINIIQGDSLENDKF-IKNQKFDVIIGNPPFGSKEWKDEELEKDERF 151 (311)
T ss_dssp ----------------TTHH-----------CBGCEEEES-TTTSHSC-TST--EEEEEEE--CTCES-STGGGCTTCCC
T ss_pred ----------------hccc-----------ccccccccccccccccc-ccccccccccCCCCccccccccccccccccc
Confidence 0000 01134566675443221 113689999887 2100
Q ss_pred ------ChhhHHHHHHHHHHhccCCcEEEEecC
Q 015966 309 ------TAHNIVEYIEIISRILKDGGVWINLGP 335 (397)
Q Consensus 309 ------ta~Ni~~yi~~I~~~LKPGG~wIN~GP 335 (397)
....-..++..+.+.||+||..+-+-|
T Consensus 152 ~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Ilp 184 (311)
T PF02384_consen 152 KKYFPPKSNAEYAFIEHALSLLKPGGRAAIILP 184 (311)
T ss_dssp TTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEEE
T ss_pred cccCCCccchhhhhHHHHHhhcccccceeEEec
Confidence 111123488999999999999775444
|
1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B. |
| >PRK11727 23S rRNA mA1618 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.67 E-value=0.00058 Score=68.89 Aligned_cols=43 Identities=16% Similarity=0.159 Sum_probs=37.6
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhh
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFIL 231 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiL 231 (397)
.+.+|||+|||+|-++.-|+.+ |..++|+|++..++..|+...
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv 158 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAII 158 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHH
Confidence 5689999999999998888776 789999999999999888543
|
|
| >COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.0004 Score=68.46 Aligned_cols=125 Identities=12% Similarity=0.127 Sum_probs=74.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc-----------CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCccc
Q 015966 189 SPPACLVPGAGLGRLALEISHL-----------GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSD 257 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-----------Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~ 257 (397)
...||..+||+||--++-||.. .+.+.|.|+|..+|..|+ .-+||--....+ ...
T Consensus 96 ~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~-----------~G~Y~~~~~~~~---~~~ 161 (268)
T COG1352 96 RPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKAR-----------AGIYPSRELLRG---LPP 161 (268)
T ss_pred CceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHh-----------cCCCChhHhhcc---CCH
Confidence 4789999999999866665543 367899999999997665 234551000000 000
Q ss_pred Ccccc---ccCCCC-CCCCCCCCcceeEecccccccCCCCCCCCccEEEEe---eccCChhhHHHHHHHHHHhccCCcEE
Q 015966 258 QLRPV---SIPDIH-PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGGVW 330 (397)
Q Consensus 258 qlr~v---~iPDv~-p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~---FFIDta~Ni~~yi~~I~~~LKPGG~w 330 (397)
+++.- +.+|-. .-...+...+.|...|..+-.. ..+.||+|+|- -|+|... -.+.++.++..|||||++
T Consensus 162 ~~~~ryF~~~~~~~y~v~~~ir~~V~F~~~NLl~~~~---~~~~fD~IfCRNVLIYFd~~~-q~~il~~f~~~L~~gG~L 237 (268)
T COG1352 162 ELLRRYFERGGDGSYRVKEELRKMVRFRRHNLLDDSP---FLGKFDLIFCRNVLIYFDEET-QERILRRFADSLKPGGLL 237 (268)
T ss_pred HHHhhhEeecCCCcEEEChHHhcccEEeecCCCCCcc---ccCCCCEEEEcceEEeeCHHH-HHHHHHHHHHHhCCCCEE
Confidence 00000 011100 0000123457888888765321 35789999974 2445322 357899999999999999
Q ss_pred E
Q 015966 331 I 331 (397)
Q Consensus 331 I 331 (397)
+
T Consensus 238 f 238 (268)
T COG1352 238 F 238 (268)
T ss_pred E
Confidence 8
|
|
| >PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00035 Score=76.96 Aligned_cols=104 Identities=16% Similarity=0.197 Sum_probs=71.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--------------------------------------------CeEEEEeCCHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--------------------------------------------FISQGNEFSYYMM 224 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--------------------------------------------f~V~GnD~S~~ML 224 (397)
++..++||+||.|.+..|.|..+ ..++|+|++..|+
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 46789999999999999998741 2589999999999
Q ss_pred HHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe
Q 015966 225 ICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC 304 (397)
Q Consensus 225 ~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~ 304 (397)
..|+--+... +....+.+..+|+.++.. +...++||+|||+
T Consensus 270 ~~A~~N~~~~--------------------------------------g~~~~i~~~~~D~~~~~~-~~~~~~~d~IvtN 310 (702)
T PRK11783 270 QAARKNARRA--------------------------------------GVAELITFEVKDVADLKN-PLPKGPTGLVISN 310 (702)
T ss_pred HHHHHHHHHc--------------------------------------CCCcceEEEeCChhhccc-ccccCCCCEEEEC
Confidence 9887332211 111236788999988642 2223579999998
Q ss_pred --ec--cCChhhHHHHHHHHHHhcc---CCcEEE
Q 015966 305 --FF--IDTAHNIVEYIEIISRILK---DGGVWI 331 (397)
Q Consensus 305 --FF--IDta~Ni~~yi~~I~~~LK---PGG~wI 331 (397)
|. +....++.+..+.+-+.|| +|+...
T Consensus 311 PPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~ 344 (702)
T PRK11783 311 PPYGERLGEEPALIALYSQLGRRLKQQFGGWNAA 344 (702)
T ss_pred CCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 54 4444556666556666655 776554
|
|
| >KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00035 Score=66.90 Aligned_cols=123 Identities=21% Similarity=0.214 Sum_probs=81.9
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCHHHHHHHHhhhhcccccCccccccc
Q 015966 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPW 245 (397)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~----Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPf 245 (397)
.|..++++|..++- ++.+.|++|.|+|.|+.-+|++ |-.+.|+|.=...+..|..-+++-
T Consensus 68 mha~~le~L~~~L~-----pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~----------- 131 (237)
T KOG1661|consen 68 MHATALEYLDDHLQ-----PGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKD----------- 131 (237)
T ss_pred HHHHHHHHHHHhhc-----cCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhh-----------
Confidence 35678888887653 6789999999999998888754 556699999888887776433211
Q ss_pred cccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhcc
Q 015966 246 IHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILK 325 (397)
Q Consensus 246 i~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LK 325 (397)
++-|++ +. .-....++++.||-+..+. ...+||+|..- . ...+.-+..-..||
T Consensus 132 ----------------i~~~e~-~~-~~~~~~l~ivvGDgr~g~~---e~a~YDaIhvG---A---aa~~~pq~l~dqL~ 184 (237)
T KOG1661|consen 132 ----------------ITTSES-SS-KLKRGELSIVVGDGRKGYA---EQAPYDAIHVG---A---AASELPQELLDQLK 184 (237)
T ss_pred ----------------ccCchh-hh-hhccCceEEEeCCccccCC---ccCCcceEEEc---c---CccccHHHHHHhhc
Confidence 111111 00 0012348899999988875 35889999653 1 12345566667788
Q ss_pred CCcEEEE-ecC
Q 015966 326 DGGVWIN-LGP 335 (397)
Q Consensus 326 PGG~wIN-~GP 335 (397)
|||.+|- .||
T Consensus 185 ~gGrllip~~~ 195 (237)
T KOG1661|consen 185 PGGRLLIPVGQ 195 (237)
T ss_pred cCCeEEEeecc
Confidence 8777773 554
|
|
| >TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00065 Score=72.04 Aligned_cols=43 Identities=14% Similarity=0.137 Sum_probs=35.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcC----------CeEEEEeCCHHHHHHHHhhh
Q 015966 189 SPPACLVPGAGLGRLALEISHLG----------FISQGNEFSYYMMICSSFIL 231 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G----------f~V~GnD~S~~ML~~s~fiL 231 (397)
...+|||||||+|.+...++++. -++.|.|++...+..++..+
T Consensus 31 ~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l 83 (524)
T TIGR02987 31 TKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLL 83 (524)
T ss_pred cceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHH
Confidence 45799999999999988887643 35789999999988777544
|
Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted. |
| >COG3963 Phospholipid N-methyltransferase [Lipid metabolism] | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.00089 Score=62.27 Aligned_cols=104 Identities=23% Similarity=0.329 Sum_probs=75.7
Q ss_pred CCCCeEEEecCCCChhHHHHHHcCC---eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCcccccc
Q 015966 188 ESPPACLVPGAGLGRLALEISHLGF---ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (397)
Q Consensus 188 ~~~~rVLvPGCGlGRLa~eLA~~Gf---~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~i 264 (397)
.++.-||++|.|||-++..|-++|. .++++|.|.+.... |+. .+
T Consensus 47 esglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~----L~~-----------------------------~~ 93 (194)
T COG3963 47 ESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCH----LNQ-----------------------------LY 93 (194)
T ss_pred ccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHH----HHH-----------------------------hC
Confidence 3677999999999999999999996 58999999988643 221 12
Q ss_pred CCCCCCCCCCCCcceeEeccccccc--CCCCCCCCccEEEEee-c--cCChhhHHHHHHHHHHhccCCcEEEE--ecCC
Q 015966 265 PDIHPASAGITEGFSMCGGDFVEVY--SDPSQVGAWDAVVTCF-F--IDTAHNIVEYIEIISRILKDGGVWIN--LGPL 336 (397)
Q Consensus 265 PDv~p~~~~~~~~ls~~~GDF~ely--~~~~~~~~fD~VvT~F-F--IDta~Ni~~yi~~I~~~LKPGG~wIN--~GPL 336 (397)
|+ ..++.||..++. ........||+|+++. + +.+. -.+++++.....|.+||.+|- .||+
T Consensus 94 p~-----------~~ii~gda~~l~~~l~e~~gq~~D~viS~lPll~~P~~-~~iaile~~~~rl~~gg~lvqftYgp~ 160 (194)
T COG3963 94 PG-----------VNIINGDAFDLRTTLGEHKGQFFDSVISGLPLLNFPMH-RRIAILESLLYRLPAGGPLVQFTYGPL 160 (194)
T ss_pred CC-----------ccccccchhhHHHHHhhcCCCeeeeEEeccccccCcHH-HHHHHHHHHHHhcCCCCeEEEEEecCC
Confidence 33 345667766553 1123346799999985 3 3333 256899999999999999996 4654
|
|
| >PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.0014 Score=65.39 Aligned_cols=52 Identities=10% Similarity=-0.091 Sum_probs=41.8
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHH
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSS 228 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~ 228 (397)
+++++.+.+.. .++..+||.+||+|..+..|++.+ ..|.|+|.+..|+..++
T Consensus 7 ll~Evl~~L~~---~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak 61 (296)
T PRK00050 7 LLDEVVDALAI---KPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAK 61 (296)
T ss_pred cHHHHHHhhCC---CCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHH
Confidence 44555555532 256799999999999999999984 68999999999998776
|
|
| >COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.0012 Score=64.81 Aligned_cols=79 Identities=18% Similarity=0.137 Sum_probs=59.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++..||++|+|+|.|+..|+++|..|+++|+...|+..-+-.+
T Consensus 30 ~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~------------------------------------- 72 (259)
T COG0030 30 PGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERF------------------------------------- 72 (259)
T ss_pred CCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhc-------------------------------------
Confidence 4679999999999999999999999999999999975432110
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--eccCCh
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA 310 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta 310 (397)
....++.++.||+..+.. +... +++.||.+ |.|.|.
T Consensus 73 ----~~~~n~~vi~~DaLk~d~-~~l~-~~~~vVaNlPY~Issp 110 (259)
T COG0030 73 ----APYDNLTVINGDALKFDF-PSLA-QPYKVVANLPYNISSP 110 (259)
T ss_pred ----ccccceEEEeCchhcCcc-hhhc-CCCEEEEcCCCcccHH
Confidence 012358899999988643 2111 68889887 677764
|
|
| >KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00038 Score=71.35 Aligned_cols=147 Identities=22% Similarity=0.253 Sum_probs=95.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
+..++|+.|||.|....+++..+ -.++|++.+.+-+..++-.. .. . +++.
T Consensus 110 ~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~---~~---~----~l~~------------------- 160 (364)
T KOG1269|consen 110 PGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELA---KK---A----YLDN------------------- 160 (364)
T ss_pred ccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHH---HH---H----Hhhh-------------------
Confidence 45589999999999999999986 68999999987765443111 00 0 0111
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe---------cCCcc
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL---------GPLLY 338 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~---------GPLlY 338 (397)
.-.++.+||..- |+.++.||.|-+.--.--+++....+++|+++|||||+||.. .+--+
T Consensus 161 ---------k~~~~~~~~~~~---~fedn~fd~v~~ld~~~~~~~~~~~y~Ei~rv~kpGG~~i~~e~i~~~~~~~~~~~ 228 (364)
T KOG1269|consen 161 ---------KCNFVVADFGKM---PFEDNTFDGVRFLEVVCHAPDLEKVYAEIYRVLKPGGLFIVKEWIKTAKLKKPNSE 228 (364)
T ss_pred ---------hcceehhhhhcC---CCCccccCcEEEEeecccCCcHHHHHHHHhcccCCCceEEeHHHHHhhhccCCCcc
Confidence 122244565442 345788999876544445667889999999999999999961 22112
Q ss_pred hhhhc--cCCCCCccccCCHHHHHHHHHhCCCEEEE-Eeec
Q 015966 339 HFADL--YGQEDEMSIELSLEDVKRVALHYGFEFEK-EKTI 376 (397)
Q Consensus 339 h~~d~--~g~~~~~~ieLS~EEl~~ll~~~GFeii~-e~~i 376 (397)
|..-. .+..+....+....++..+++..||..+. ++.+
T Consensus 229 ~~~i~~~i~~gd~~~~~~~~~d~~~~~~~~~~~~~~~~~dl 269 (364)
T KOG1269|consen 229 HVDILLEIEGGDALPAETFNTDVFDLLKSFGFEHLKLEKDL 269 (364)
T ss_pred cccccCceeccccccceeccccHHHHHhhccchhhhhcccc
Confidence 21100 00112223456888899999999998887 4433
|
|
| >COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0011 Score=63.94 Aligned_cols=102 Identities=25% Similarity=0.355 Sum_probs=70.2
Q ss_pred CCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 190 PPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
...+|++|||.|+...++|++- ....|+|+...-+..+ ++++.+. .+
T Consensus 49 ~pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~---l~k~~~~-----------------------~l----- 97 (227)
T COG0220 49 APIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKA---LKKIKEL-----------------------GL----- 97 (227)
T ss_pred CcEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHH---HHHHHHc-----------------------CC-----
Confidence 4689999999999999999995 5688999987766533 2222110 11
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCC----hh--h-H--HHHHHHHHHhccCCcEEE
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT----AH--N-I--VEYIEIISRILKDGGVWI 331 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDt----a~--N-i--~~yi~~I~~~LKPGG~wI 331 (397)
.|+.++.+|..++...-..+++.|-|.-+| -|. -+ . | ..+++.+.++|||||.+-
T Consensus 98 --------~Nlri~~~DA~~~l~~~~~~~sl~~I~i~F-PDPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~ 161 (227)
T COG0220 98 --------KNLRLLCGDAVEVLDYLIPDGSLDKIYINF-PDPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLH 161 (227)
T ss_pred --------CcEEEEcCCHHHHHHhcCCCCCeeEEEEEC-CCCCCCccccccccCCHHHHHHHHHHccCCCEEE
Confidence 147889899887643222346889887665 231 11 0 1 168999999999999987
|
|
| >PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.00098 Score=63.00 Aligned_cols=113 Identities=19% Similarity=0.251 Sum_probs=67.9
Q ss_pred ccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHH--cCCeEEEEeCCHHHHHHHHhhhhcccc
Q 015966 159 WAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISH--LGFISQGNEFSYYMMICSSFILNHTET 236 (397)
Q Consensus 159 WS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~--~Gf~V~GnD~S~~ML~~s~fiLn~~~~ 236 (397)
||.-=..||. +|.+. + .++.+|||+-||.|-++.-+|+ ++-.|.++|+.+..+...+ ....
T Consensus 84 fs~rl~~Er~----Ri~~~----v-----~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~---~Ni~- 146 (200)
T PF02475_consen 84 FSPRLSTERR----RIANL----V-----KPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLK---ENIR- 146 (200)
T ss_dssp --GGGHHHHH----HHHTC-----------TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHH---HHHH-
T ss_pred EccccHHHHH----HHHhc----C-----CcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHH---HHHH-
Confidence 6665556775 23322 2 2567999999999999999999 7888999999987765332 1110
Q ss_pred cCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHH
Q 015966 237 AGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEY 316 (397)
Q Consensus 237 ~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~y 316 (397)
.+ . ....+..+.||.+++.. .+.+|-|+-...-. -.++
T Consensus 147 lN----------------------k------------v~~~i~~~~~D~~~~~~----~~~~drvim~lp~~----~~~f 184 (200)
T PF02475_consen 147 LN----------------------K------------VENRIEVINGDAREFLP----EGKFDRVIMNLPES----SLEF 184 (200)
T ss_dssp HT----------------------T-------------TTTEEEEES-GGG-------TT-EEEEEE--TSS----GGGG
T ss_pred Hc----------------------C------------CCCeEEEEcCCHHHhcC----ccccCEEEECChHH----HHHH
Confidence 01 0 11236778999988743 57899887654322 2378
Q ss_pred HHHHHHhccCCcEE
Q 015966 317 IEIISRILKDGGVW 330 (397)
Q Consensus 317 i~~I~~~LKPGG~w 330 (397)
+.....++|+||+.
T Consensus 185 l~~~~~~~~~~g~i 198 (200)
T PF02475_consen 185 LDAALSLLKEGGII 198 (200)
T ss_dssp HHHHHHHEEEEEEE
T ss_pred HHHHHHHhcCCcEE
Confidence 88899999998864
|
Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A. |
| >PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 [] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.001 Score=63.04 Aligned_cols=117 Identities=16% Similarity=0.114 Sum_probs=64.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCe-EEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL-GFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf~-V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
+....+|+|||+|+.+...|.. |+. +.|+|+...-...|.-+++.-++. ...+ +..
T Consensus 42 ~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~--~~~~-----------------g~~--- 99 (205)
T PF08123_consen 42 PDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKR--MKHY-----------------GKR--- 99 (205)
T ss_dssp TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHH--HHHC-----------------TB----
T ss_pred CCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHH--HHHh-----------------hcc---
Confidence 5678999999999998887744 877 999999998777666444321110 0000 001
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCC
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL 336 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPL 336 (397)
...+.+..|||++.-.....-..-|+|+.+-+.= .+.+...|..+..-||||-+.|..-|+
T Consensus 100 --------~~~v~l~~gdfl~~~~~~~~~s~AdvVf~Nn~~F-~~~l~~~L~~~~~~lk~G~~IIs~~~~ 160 (205)
T PF08123_consen 100 --------PGKVELIHGDFLDPDFVKDIWSDADVVFVNNTCF-DPDLNLALAELLLELKPGARIISTKPF 160 (205)
T ss_dssp ----------EEEEECS-TTTHHHHHHHGHC-SEEEE--TTT--HHHHHHHHHHHTTS-TT-EEEESS-S
T ss_pred --------cccceeeccCccccHhHhhhhcCCCEEEEecccc-CHHHHHHHHHHHhcCCCCCEEEECCCc
Confidence 1236778999976311000002347887654321 234677889999999999999974443
|
H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A .... |
| >PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.0013 Score=67.62 Aligned_cols=96 Identities=15% Similarity=0.089 Sum_probs=67.4
Q ss_pred CCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 190 PPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
+.+|||++||+|-++..+|+. |. .|++||++..++..++..++. + .+
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~----N----------------------~~----- 106 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLEL----N----------------------GL----- 106 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH----h----------------------CC-----
Confidence 358999999999999999876 43 799999999998776632210 0 00
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
.+..+..+|..++.. . .+.||+|+. |.......+++...+.+++||++.
T Consensus 107 --------~~~~v~~~Da~~~l~--~-~~~fD~V~l----DP~Gs~~~~l~~al~~~~~~gily 155 (382)
T PRK04338 107 --------ENEKVFNKDANALLH--E-ERKFDVVDI----DPFGSPAPFLDSAIRSVKRGGLLC 155 (382)
T ss_pred --------CceEEEhhhHHHHHh--h-cCCCCEEEE----CCCCCcHHHHHHHHHHhcCCCEEE
Confidence 014467788766432 1 357999865 332223578888778899999887
|
|
| >PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases | Back alignment and domain information |
|---|
Probab=97.28 E-value=0.00087 Score=61.25 Aligned_cols=104 Identities=14% Similarity=0.137 Sum_probs=57.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+||++|||+|-.+.-+|++ +-.|+..|... -+-..+..+.. +.. ..
T Consensus 45 ~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~----N~~-------------~~----------- 95 (173)
T PF10294_consen 45 RGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIEL----NGS-------------LL----------- 95 (173)
T ss_dssp TTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHT----T----------------------------
T ss_pred CCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHh----ccc-------------cc-----------
Confidence 6789999999999999999999 67899999998 44333321110 000 00
Q ss_pred CCCCCCCCCCcceeEeccccc-ccCCCCCCCCccEEEEe--eccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVE-VYSDPSQVGAWDAVVTC--FFIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~e-ly~~~~~~~~fD~VvT~--FFIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
...++...-|.-+ +.......+.||+|+.+ .|- .......+++|.++|+|+|..+
T Consensus 96 --------~~~v~v~~L~Wg~~~~~~~~~~~~~D~IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl 153 (173)
T PF10294_consen 96 --------DGRVSVRPLDWGDELDSDLLEPHSFDVILASDVLYD--EELFEPLVRTLKRLLKPNGKVL 153 (173)
T ss_dssp ------------EEEE--TTS-HHHHHHS-SSBSEEEEES--S---GGGHHHHHHHHHHHBTT-TTEE
T ss_pred --------cccccCcEEEecCcccccccccccCCEEEEecccch--HHHHHHHHHHHHHHhCCCCEEE
Confidence 0012222222211 10000123689999975 342 2446788999999999988854
|
They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A. |
| >PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.00077 Score=61.09 Aligned_cols=49 Identities=14% Similarity=0.007 Sum_probs=35.3
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHH
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG---FISQGNEFSYY 222 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ 222 (397)
.+.+.+++ ++-.......+|||+||+.|..+..+.+++ ..|.|+|+...
T Consensus 8 KL~ei~~~-~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~ 59 (181)
T PF01728_consen 8 KLYEIDEK-FKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM 59 (181)
T ss_dssp HHHHHHHT-TSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST
T ss_pred HHHHHHHH-CCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc
Confidence 34444444 441211246899999999999999999999 78999999873
|
RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A .... |
| >KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0061 Score=62.03 Aligned_cols=133 Identities=18% Similarity=0.273 Sum_probs=90.3
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCC
Q 015966 191 PACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA 270 (397)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~ 270 (397)
...+|.|.|+||++..|...--+|.|++|...-++.++ ..+ . |
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a---------~~~----------------------~-~----- 221 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAA---------PYL----------------------A-P----- 221 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhh---------hhh----------------------c-C-----
Confidence 56789999999999999995446999999987765332 000 0 1
Q ss_pred CCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCC--
Q 015966 271 SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ-- 346 (397)
Q Consensus 271 ~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~-- 346 (397)
++..+.|||+.- .|. =|+|+....|. |.++..++|+.+++.|+|||..|-.-.++=. ++..+.
T Consensus 222 ------gV~~v~gdmfq~--~P~----~daI~mkWiLhdwtDedcvkiLknC~~sL~~~GkIiv~E~V~p~-e~~~dd~~ 288 (342)
T KOG3178|consen 222 ------GVEHVAGDMFQD--TPK----GDAIWMKWILHDWTDEDCVKILKNCKKSLPPGGKIIVVENVTPE-EDKFDDID 288 (342)
T ss_pred ------Ccceeccccccc--CCC----cCeEEEEeecccCChHHHHHHHHHHHHhCCCCCEEEEEeccCCC-CCCccccc
Confidence 145678998764 232 25999888764 6677999999999999999999953332211 111110
Q ss_pred -------------CCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 347 -------------EDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 347 -------------~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
..+...+.+..|...++.+.||....-
T Consensus 289 s~v~~~~d~lm~~~~~~Gkert~~e~q~l~~~~gF~~~~~ 328 (342)
T KOG3178|consen 289 SSVTRDMDLLMLTQTSGGKERTLKEFQALLPEEGFPVCMV 328 (342)
T ss_pred cceeehhHHHHHHHhccceeccHHHHHhcchhhcCceeEE
Confidence 001245668888888888888876553
|
|
| >KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.0043 Score=65.54 Aligned_cols=99 Identities=19% Similarity=0.284 Sum_probs=72.0
Q ss_pred CeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCC
Q 015966 191 PACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (397)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p 269 (397)
-++|++|||.-+|..++-+-||. ++-+|+|.--+++.. .-.+ .-
T Consensus 50 ~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~--~~~~------~~--------------------------- 94 (482)
T KOG2352|consen 50 FKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQ--VRNA------KE--------------------------- 94 (482)
T ss_pred ceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHH--hccc------cC---------------------------
Confidence 49999999999999999999995 899999997664322 1000 00
Q ss_pred CCCCCCCcceeEecccccccCCCCCCCCccEEEEe-----eccCCh-----hhHHHHHHHHHHhccCCcEEEE
Q 015966 270 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-----FFIDTA-----HNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 270 ~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~-----FFIDta-----~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
...+.|...|+..++. .+++||+|+-- +|-|.. .-+..++..|+++|+|||++|+
T Consensus 95 -----~~~~~~~~~d~~~l~f---edESFdiVIdkGtlDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~s 159 (482)
T KOG2352|consen 95 -----RPEMQMVEMDMDQLVF---EDESFDIVIDKGTLDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYIS 159 (482)
T ss_pred -----CcceEEEEecchhccC---CCcceeEEEecCccccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEE
Confidence 1127788888877653 47899999832 333211 1245789999999999999997
|
|
| >PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.008 Score=59.04 Aligned_cols=58 Identities=21% Similarity=0.161 Sum_probs=46.2
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhc
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNH 233 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~ 233 (397)
.++.+|.+..|+. ...+|||.|||.|--+|.+... -.+++++|-|..|+.+++.|+..
T Consensus 20 ~vl~El~~r~p~f---~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~ 80 (274)
T PF09243_consen 20 RVLSELRKRLPDF---RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRA 80 (274)
T ss_pred HHHHHHHHhCcCC---CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhc
Confidence 4888888888754 5679999999999876655442 34689999999999999988753
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation |
| >PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.00098 Score=61.28 Aligned_cols=37 Identities=11% Similarity=0.065 Sum_probs=32.3
Q ss_pred eEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015966 192 ACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (397)
Q Consensus 192 rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (397)
.|||+.||.|..+..+|+.+-.|.|+|+++..+..++
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~ 38 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAK 38 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHH
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHH
Confidence 6999999999999999999999999999999998877
|
Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A. |
| >PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.0031 Score=58.60 Aligned_cols=101 Identities=20% Similarity=0.207 Sum_probs=62.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
.+.+|||+=||+|.++.|...+|. .|+.+|.+...+.+.+.-+.... +
T Consensus 42 ~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~----------------------------~--- 90 (183)
T PF03602_consen 42 EGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLG----------------------------L--- 90 (183)
T ss_dssp TT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT--------------------------------
T ss_pred CCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhC----------------------------C---
Confidence 467999999999999999999997 79999999988765443222111 0
Q ss_pred CCCCCCCCCcceeEecccccccCC-CCCCCCccEEEEeeccCChh---h-HHHHHHHHH--HhccCCcEEE
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTCFFIDTAH---N-IVEYIEIIS--RILKDGGVWI 331 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~-~~~~~~fD~VvT~FFIDta~---N-i~~yi~~I~--~~LKPGG~wI 331 (397)
......+.+|+...... ......||+| |+|+.- . +.+.++.+. .+|+++|+.|
T Consensus 91 -------~~~~~v~~~d~~~~l~~~~~~~~~fDiI----flDPPY~~~~~~~~~l~~l~~~~~l~~~~~ii 150 (183)
T PF03602_consen 91 -------EDKIRVIKGDAFKFLLKLAKKGEKFDII----FLDPPYAKGLYYEELLELLAENNLLNEDGLII 150 (183)
T ss_dssp -------GGGEEEEESSHHHHHHHHHHCTS-EEEE----EE--STTSCHHHHHHHHHHHHTTSEEEEEEEE
T ss_pred -------CcceeeeccCHHHHHHhhcccCCCceEE----EECCCcccchHHHHHHHHHHHCCCCCCCEEEE
Confidence 11255667776544321 0124789998 455431 1 355667766 7899999988
|
They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A. |
| >KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription] | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0048 Score=62.99 Aligned_cols=99 Identities=17% Similarity=0.242 Sum_probs=70.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.-|||.|||.|-|.+.-|+.|. .|.++|-|. |...|+.+.. +|
T Consensus 177 ~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~-----------------~N---------------- 222 (517)
T KOG1500|consen 177 QDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVA-----------------SN---------------- 222 (517)
T ss_pred CCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHh-----------------cC----------------
Confidence 567899999999999999999997 699999986 6555554432 11
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe---eccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~---FFIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
...+++..+-|-..++.. .++.|+|++- +.|-...=+..|+.. .+.|||.|...
T Consensus 223 -----~~~~rItVI~GKiEdieL----PEk~DviISEPMG~mL~NERMLEsYl~A-rk~l~P~GkMf 279 (517)
T KOG1500|consen 223 -----NLADRITVIPGKIEDIEL----PEKVDVIISEPMGYMLVNERMLESYLHA-RKWLKPNGKMF 279 (517)
T ss_pred -----CccceEEEccCccccccC----chhccEEEeccchhhhhhHHHHHHHHHH-HhhcCCCCccc
Confidence 112346777788777643 3789999975 334443434556554 49999999876
|
|
| >PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.0034 Score=66.87 Aligned_cols=102 Identities=18% Similarity=0.237 Sum_probs=66.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
.+..+|++|||.|....++|++- ..+.|+|.+..-+..+. +...+. .+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~---~~~~~~--------------------~l------- 396 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVL---KLAGEQ--------------------NI------- 396 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHH---HHHHHc--------------------CC-------
Confidence 57789999999999999999995 67899999987554222 221110 00
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCC------hhh-H--HHHHHHHHHhccCCcEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT------AHN-I--VEYIEIISRILKDGGVWI 331 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDt------a~N-i--~~yi~~I~~~LKPGG~wI 331 (397)
.++.++.+|+..+... ..++++|.|..+| -|. ... + .++++.++++|||||.+-
T Consensus 397 ---------~N~~~~~~~~~~~~~~-~~~~sv~~i~i~F-PDPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~ 459 (506)
T PRK01544 397 ---------TNFLLFPNNLDLILND-LPNNSLDGIYILF-PDPWIKNKQKKKRIFNKERLKILQDKLKDNGNLV 459 (506)
T ss_pred ---------CeEEEEcCCHHHHHHh-cCcccccEEEEEC-CCCCCCCCCccccccCHHHHHHHHHhcCCCCEEE
Confidence 1245566665432211 2357788887665 221 011 1 268999999999999775
|
|
| >COG1092 Predicted SAM-dependent methyltransferases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0047 Score=64.05 Aligned_cols=136 Identities=15% Similarity=0.129 Sum_probs=88.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+||++=|=||..++..|..|. +|+++|.|-..|-.|+--.. -| ++.
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~----LN----------------------g~~---- 266 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAE----LN----------------------GLD---- 266 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHH----hc----------------------CCC----
Confidence 478999999999999999999999 99999999999987652110 00 110
Q ss_pred CCCCCCCCCcceeEecccccccCCC-CCCCCccEEEEe--ecc-------CChhhHHHHHHHHHHhccCCcEEEEecCCc
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDP-SQVGAWDAVVTC--FFI-------DTAHNIVEYIEIISRILKDGGVWINLGPLL 337 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~-~~~~~fD~VvT~--FFI-------Dta~Ni~~yi~~I~~~LKPGG~wIN~GPLl 337 (397)
.....++.+|..++.... ....+||+|+.= -|. +-..+..+.+....++|+|||+++-.-- .
T Consensus 267 -------~~~~~~i~~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~-~ 338 (393)
T COG1092 267 -------GDRHRFIVGDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC-S 338 (393)
T ss_pred -------ccceeeehhhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec-C
Confidence 122678999988864321 123489999852 121 2233445566777799999999995211 0
Q ss_pred chhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 338 YHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 338 Yh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
.+ .+.++-.+.|.+.+...|.....
T Consensus 339 ~~----------~~~~~f~~~i~~a~~~~~~~~~~ 363 (393)
T COG1092 339 RH----------FSSDLFLEIIARAAAAAGRRAQE 363 (393)
T ss_pred Cc----------cCHHHHHHHHHHHHHhcCCcEEE
Confidence 11 12334455666666666665544
|
|
| >TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0036 Score=64.43 Aligned_cols=97 Identities=12% Similarity=0.075 Sum_probs=69.1
Q ss_pred CCeEEEecCCCChhHHHHHHc--C-CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 190 PPACLVPGAGLGRLALEISHL--G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~--G-f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
+.+|||+-||+|-.+.+++++ | -.|++||+++..+...+.-+.. + .+
T Consensus 45 ~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~----N----------------------~~---- 94 (374)
T TIGR00308 45 YINIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEY----N----------------------SV---- 94 (374)
T ss_pred CCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHH----h----------------------CC----
Confidence 468999999999999999998 5 3799999999988655422110 0 00
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
.++.++.+|+..+.. .....||+|. +|.-.....+++.+.+.+++||++.
T Consensus 95 ---------~~~~v~~~Da~~~l~--~~~~~fDvId----lDPfGs~~~fld~al~~~~~~glL~ 144 (374)
T TIGR00308 95 ---------ENIEVPNEDAANVLR--YRNRKFHVID----IDPFGTPAPFVDSAIQASAERGLLL 144 (374)
T ss_pred ---------CcEEEEchhHHHHHH--HhCCCCCEEE----eCCCCCcHHHHHHHHHhcccCCEEE
Confidence 124567788776543 1135799884 4543333479999999999999887
|
This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes. |
| >KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0071 Score=60.12 Aligned_cols=49 Identities=16% Similarity=0.248 Sum_probs=41.0
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHH
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMI 225 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~ 225 (397)
+++.|-+. ...++...||+.|-|||.|+..|-.+|..|.++|+...|+.
T Consensus 46 v~~~I~~k---a~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmva 94 (315)
T KOG0820|consen 46 VIDQIVEK---ADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVA 94 (315)
T ss_pred HHHHHHhc---cCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHH
Confidence 55555443 33457889999999999999999999999999999999975
|
|
| >PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.012 Score=58.56 Aligned_cols=133 Identities=14% Similarity=0.123 Sum_probs=81.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+||++=|=||.++...|+.|. .|+++|.|..+|..++- |... | .+.
T Consensus 123 ~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~--N~~l--N----------------------g~~---- 172 (286)
T PF10672_consen 123 KGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKE--NAAL--N----------------------GLD---- 172 (286)
T ss_dssp TTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHH--HHHH--T----------------------T-C----
T ss_pred CCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHH--HHHH--c----------------------CCC----
Confidence 456999999999999999898897 69999999999986652 1110 1 000
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--eccCC----hhhHHHHHHHHHHhccCCcEEEEecCCcchhh
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDT----AHNIVEYIEIISRILKDGGVWINLGPLLYHFA 341 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFIDt----a~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~ 341 (397)
.....++++|..+....-...++||+||.= -|.-. ..+..+.+....++|+|||+++.. .
T Consensus 173 -------~~~~~~~~~Dvf~~l~~~~~~~~fD~IIlDPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~-------s 238 (286)
T PF10672_consen 173 -------LDRHRFIQGDVFKFLKRLKKGGRFDLIILDPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTC-------S 238 (286)
T ss_dssp -------CTCEEEEES-HHHHHHHHHHTT-EEEEEE--SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEE-------E
T ss_pred -------ccceEEEecCHHHHHHHHhcCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEE-------c
Confidence 123678889987743210124689999853 12211 234556788888999999998842 1
Q ss_pred hccCCCCCccccCCHHHHHHHHHhC--CCEEEEE
Q 015966 342 DLYGQEDEMSIELSLEDVKRVALHY--GFEFEKE 373 (397)
Q Consensus 342 d~~g~~~~~~ieLS~EEl~~ll~~~--GFeii~e 373 (397)
. +-.++.+++.+++... -+++++.
T Consensus 239 c--------s~~i~~~~l~~~~~~~a~~~~~~~~ 264 (286)
T PF10672_consen 239 C--------SHHISPDFLLEAVAEAAREVEFIER 264 (286)
T ss_dssp ----------TTS-HHHHHHHHHHHHHHCEEEEE
T ss_pred C--------CcccCHHHHHHHHHHhCccceEeee
Confidence 1 2346666666655543 3555543
|
The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A. |
| >PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.63 E-value=0.015 Score=59.46 Aligned_cols=86 Identities=15% Similarity=0.131 Sum_probs=60.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+||++|..++.|+++|..|+|+|.+. |- .-+.
T Consensus 211 ~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~-l~---~~L~------------------------------------- 249 (357)
T PRK11760 211 PGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGP-MA---QSLM------------------------------------- 249 (357)
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCEEEEEechh-cC---Hhhh-------------------------------------
Confidence 678999999999999999999999999999654 21 0000
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCC
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDG 327 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPG 327 (397)
...++....+|-..... . .+.+|+||+ |.+....+..+.|.+.|..|
T Consensus 250 -----~~~~V~h~~~d~fr~~p--~-~~~vDwvVc----Dmve~P~rva~lm~~Wl~~g 296 (357)
T PRK11760 250 -----DTGQVEHLRADGFKFRP--P-RKNVDWLVC----DMVEKPARVAELMAQWLVNG 296 (357)
T ss_pred -----CCCCEEEEeccCcccCC--C-CCCCCEEEE----ecccCHHHHHHHHHHHHhcC
Confidence 01225556666554322 1 467899987 66655667778888888766
|
|
| >COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.007 Score=61.64 Aligned_cols=93 Identities=23% Similarity=0.238 Sum_probs=64.2
Q ss_pred CCCCeEEEecCC-CChhHHHHHH-cCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 188 ESPPACLVPGAG-LGRLALEISH-LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 188 ~~~~rVLvPGCG-lGRLa~eLA~-~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
+++.+|++.|+| +|.+|..+|+ +|++|+++|.|..=+..|+-+- + .+.
T Consensus 165 ~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lG--A----d~~------------------------ 214 (339)
T COG1064 165 KPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLG--A----DHV------------------------ 214 (339)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhC--C----cEE------------------------
Confidence 478899999875 8899999999 7999999999999876665321 0 000
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEec
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLG 334 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~G 334 (397)
+.....|+.+.. .+.||+| |+|+. ...++...+.||+||.++-+|
T Consensus 215 ------------i~~~~~~~~~~~-----~~~~d~i-----i~tv~--~~~~~~~l~~l~~~G~~v~vG 259 (339)
T COG1064 215 ------------INSSDSDALEAV-----KEIADAI-----IDTVG--PATLEPSLKALRRGGTLVLVG 259 (339)
T ss_pred ------------EEcCCchhhHHh-----HhhCcEE-----EECCC--hhhHHHHHHHHhcCCEEEEEC
Confidence 000112222221 2348998 45555 566888889999999999765
|
|
| >TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0066 Score=61.73 Aligned_cols=38 Identities=13% Similarity=0.002 Sum_probs=35.2
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015966 191 PACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (397)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (397)
.+|||+|||+|.++..||+..-.|+|+|.|..|+..++
T Consensus 199 ~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~ 236 (353)
T TIGR02143 199 GDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQ 236 (353)
T ss_pred CcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHH
Confidence 36999999999999999998889999999999998776
|
This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA. |
| >PF13679 Methyltransf_32: Methyltransferase domain | Back alignment and domain information |
|---|
Probab=96.39 E-value=0.0087 Score=52.71 Aligned_cols=41 Identities=15% Similarity=0.148 Sum_probs=36.3
Q ss_pred CCCeEEEecCCCChhHHHHHH------cCCeEEEEeCCHHHHHHHHh
Q 015966 189 SPPACLVPGAGLGRLALEISH------LGFISQGNEFSYYMMICSSF 229 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~------~Gf~V~GnD~S~~ML~~s~f 229 (397)
+..+|+|.|||.|+|++.||. .+..|.|+|.+..++..++-
T Consensus 25 ~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~ 71 (141)
T PF13679_consen 25 RCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQK 71 (141)
T ss_pred CCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHH
Confidence 678999999999999999999 48899999999998876653
|
|
| >PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.023 Score=60.23 Aligned_cols=41 Identities=22% Similarity=0.106 Sum_probs=34.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHHh
Q 015966 189 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSF 229 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~f 229 (397)
++.+|||.+||.|.=+..||.+- -.+.+||+|...+...+.
T Consensus 113 pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~ 156 (470)
T PRK11933 113 APQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHA 156 (470)
T ss_pred CCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHH
Confidence 67899999999999999998861 269999999998865553
|
|
| >COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.012 Score=61.78 Aligned_cols=125 Identities=17% Similarity=0.151 Sum_probs=84.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+=||.|.++.-||+++..|.|+|++..++.+|.+.... +.
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~----n~----------------------------- 339 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAA----NG----------------------------- 339 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHH----cC-----------------------------
Confidence 557899999999999999999999999999999999988854321 10
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhh-HH-HHHHHHHHhccCCcEEEEecCCcchhhhccCC
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN-IV-EYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N-i~-~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~ 346 (397)
..++.|.+||..++.........+|+|+ +|...- +. +.++.|.+.-.+.=+.|..-|...
T Consensus 340 ------i~N~~f~~~~ae~~~~~~~~~~~~d~Vv----vDPPR~G~~~~~lk~l~~~~p~~IvYVSCNP~Tl-------- 401 (432)
T COG2265 340 ------IDNVEFIAGDAEEFTPAWWEGYKPDVVV----VDPPRAGADREVLKQLAKLKPKRIVYVSCNPATL-------- 401 (432)
T ss_pred ------CCcEEEEeCCHHHHhhhccccCCCCEEE----ECCCCCCCCHHHHHHHHhcCCCcEEEEeCCHHHH--------
Confidence 1237788888777643211224678885 575422 22 677788776555555555444321
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 347 EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 347 ~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
..|+.. +...|+++.+-.
T Consensus 402 ---------aRDl~~-L~~~gy~i~~v~ 419 (432)
T COG2265 402 ---------ARDLAI-LASTGYEIERVQ 419 (432)
T ss_pred ---------HHHHHH-HHhCCeEEEEEE
Confidence 133444 446688877755
|
|
| >PRK05031 tRNA (uracil-5-)-methyltransferase; Validated | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.01 Score=60.52 Aligned_cols=38 Identities=16% Similarity=0.019 Sum_probs=35.2
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015966 191 PACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (397)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (397)
.+|||++||+|.++..||+....|+|+|.|..|+..++
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~ 245 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQ 245 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHH
Confidence 47999999999999999998888999999999998776
|
|
| >PRK10742 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.013 Score=57.46 Aligned_cols=41 Identities=24% Similarity=0.166 Sum_probs=36.0
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhh
Q 015966 191 PACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFIL 231 (397)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiL 231 (397)
.+|||.=+|+|++++++|.+|..|+++|-|..+...-+--|
T Consensus 90 p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL 130 (250)
T PRK10742 90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGL 130 (250)
T ss_pred CEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHH
Confidence 48999999999999999999999999999998876554333
|
|
| >KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=96.12 E-value=0.0091 Score=54.70 Aligned_cols=52 Identities=13% Similarity=0.075 Sum_probs=40.6
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHH
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSS 228 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~ 228 (397)
++..|..-+.+. .+.+++++|||+|-|....+..+-+ |.|+|+.+..|.+.+
T Consensus 36 M~~~Ih~Tygdi---Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~ 88 (185)
T KOG3420|consen 36 MLYTIHNTYGDI---EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFT 88 (185)
T ss_pred HHHHHHhhhccc---cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHh
Confidence 445555555433 5789999999999999777777764 889999999998766
|
|
| >COG2520 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.079 Score=54.16 Aligned_cols=147 Identities=20% Similarity=0.230 Sum_probs=97.5
Q ss_pred ccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHHhhhhccccc
Q 015966 159 WAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETA 237 (397)
Q Consensus 159 WS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~fiLn~~~~~ 237 (397)
||.-=..||. .+.+... .+.+|||+=||.|.++..+|+.|-. |.++|+.+..+.... ... ..
T Consensus 171 Fsprl~~ER~----Rva~~v~---------~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~---eNi-~L 233 (341)
T COG2520 171 FSPRLSTERA----RVAELVK---------EGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLK---ENI-RL 233 (341)
T ss_pred ECCCchHHHH----HHHhhhc---------CCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHH---HHH-Hh
Confidence 6666666775 2333222 4779999999999999999999987 999999887764322 111 00
Q ss_pred CccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHH
Q 015966 238 GEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYI 317 (397)
Q Consensus 238 ~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi 317 (397)
| .+ ...+..+.||-+++-. .-+.+|-|+-.++-++. +|+
T Consensus 234 N----------------------~v------------~~~v~~i~gD~rev~~---~~~~aDrIim~~p~~a~----~fl 272 (341)
T COG2520 234 N----------------------KV------------EGRVEPILGDAREVAP---ELGVADRIIMGLPKSAH----EFL 272 (341)
T ss_pred c----------------------Cc------------cceeeEEeccHHHhhh---ccccCCEEEeCCCCcch----hhH
Confidence 1 11 1126678999988753 12789999877665542 788
Q ss_pred HHHHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 318 EIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 318 ~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
.....+||+||+.- .|.+..+ ....+....+++....+.|.+....
T Consensus 273 ~~A~~~~k~~g~iH-----yy~~~~e-----~~~~~~~~~~i~~~~~~~~~~~~v~ 318 (341)
T COG2520 273 PLALELLKDGGIIH-----YYEFVPE-----DDIEERPEKRIKSAARKGGYKVEVL 318 (341)
T ss_pred HHHHHHhhcCcEEE-----EEeccch-----hhcccchHHHHHHHHhhccCcceEE
Confidence 88899999977654 1222211 0122357789999999988766553
|
|
| >KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=96.00 E-value=0.095 Score=50.96 Aligned_cols=129 Identities=19% Similarity=0.227 Sum_probs=83.4
Q ss_pred HHHHHHhcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHH
Q 015966 151 IIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICS 227 (397)
Q Consensus 151 tL~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s 227 (397)
|+++-..-|--.+..|.-+ +++-|.+.+ +..++|++|-=||.=+..+|.. +=.|+++|+...-...+
T Consensus 45 t~~~~~~~~~m~v~~d~g~----fl~~li~~~------~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~ 114 (237)
T KOG1663|consen 45 TLTYPQPGSEMLVGPDKGQ----FLQMLIRLL------NAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIG 114 (237)
T ss_pred HhhcCCcccceecChHHHH----HHHHHHHHh------CCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHh
Confidence 3333345676676666653 666666654 4669999997777766666655 67899999988877655
Q ss_pred HhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCC---CCCCCCccEEEEe
Q 015966 228 SFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD---PSQVGAWDAVVTC 304 (397)
Q Consensus 228 ~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~---~~~~~~fD~VvT~ 304 (397)
.-+...+ .....+++++|+..+.... ..+.++||.|
T Consensus 115 ~~~~k~a--------------------------------------gv~~KI~~i~g~a~esLd~l~~~~~~~tfDfa--- 153 (237)
T KOG1663|consen 115 LELVKLA--------------------------------------GVDHKITFIEGPALESLDELLADGESGTFDFA--- 153 (237)
T ss_pred HHHHHhc--------------------------------------cccceeeeeecchhhhHHHHHhcCCCCceeEE---
Confidence 3222111 1112366677766553210 1235789988
Q ss_pred eccCCh-hhHHHHHHHHHHhccCCcEEE
Q 015966 305 FFIDTA-HNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 305 FFIDta-~Ni~~yi~~I~~~LKPGG~wI 331 (397)
|||.- .|=..|++..-++||+||+.+
T Consensus 154 -FvDadK~nY~~y~e~~l~Llr~GGvi~ 180 (237)
T KOG1663|consen 154 -FVDADKDNYSNYYERLLRLLRVGGVIV 180 (237)
T ss_pred -EEccchHHHHHHHHHHHhhcccccEEE
Confidence 56643 344489999999999999999
|
|
| >KOG2904 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.89 E-value=0.087 Score=52.72 Aligned_cols=61 Identities=15% Similarity=0.205 Sum_probs=42.0
Q ss_pred hhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHH
Q 015966 164 KTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSS 228 (397)
Q Consensus 164 ~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G-f~V~GnD~S~~ML~~s~ 228 (397)
+.|-+.--..+++.+.+.- .-.+..|||+|||+|-++.-|+.. + ..|+++|.|...+..|.
T Consensus 127 RpETEE~V~~Vid~~~~~~----~~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~ 189 (328)
T KOG2904|consen 127 RPETEEWVEAVIDALNNSE----HSKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAK 189 (328)
T ss_pred CccHHHHHHHHHHHHhhhh----hcccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHH
Confidence 4555544444555554321 114558999999999999887654 4 46899999999987665
|
|
| >KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown] | Back alignment and domain information |
|---|
Probab=95.84 E-value=0.0025 Score=61.26 Aligned_cols=139 Identities=19% Similarity=0.206 Sum_probs=86.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
.+.++||+|+|-|-.+..++-.--+|.+.|+|..|..- -+++ .+ .
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~r-------L~kk-~y----------------------n----- 156 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDR-------LKKK-NY----------------------N----- 156 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHH-------Hhhc-CC----------------------c-----
Confidence 56899999999999988888766679999999999631 1111 11 0
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccC-CcEEEE--ecCCcchhhh-cc
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKD-GGVWIN--LGPLLYHFAD-LY 344 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKP-GG~wIN--~GPLlYh~~d-~~ 344 (397)
++- ..|... .+=+||+|.+.-.+|..-+....++-|+.+|+| .|..|- +=|. -||-. ..
T Consensus 157 -----------Vl~--~~ew~~---t~~k~dli~clNlLDRc~~p~kLL~Di~~vl~psngrvivaLVLP~-~hYVE~N~ 219 (288)
T KOG3987|consen 157 -----------VLT--EIEWLQ---TDVKLDLILCLNLLDRCFDPFKLLEDIHLVLAPSNGRVIVALVLPY-MHYVETNT 219 (288)
T ss_pred -----------eee--ehhhhh---cCceeehHHHHHHHHhhcChHHHHHHHHHHhccCCCcEEEEEEecc-cceeecCC
Confidence 000 112211 134689887767889888888999999999999 787774 2232 23322 11
Q ss_pred CCCCCcc---cc---CCHHH----HHHHHHhCCCEEEEEeecCCCCC
Q 015966 345 GQEDEMS---IE---LSLED----VKRVALHYGFEFEKEKTIETTYT 381 (397)
Q Consensus 345 g~~~~~~---ie---LS~EE----l~~ll~~~GFeii~e~~i~~~Y~ 381 (397)
++.+..+ ++ -++|| +.++++++||.++.- ...+|+
T Consensus 220 ~g~~~rPdn~Le~~Gr~~ee~v~~~~e~lr~~g~~veaw--TrlPYL 264 (288)
T KOG3987|consen 220 SGLPLRPDNLLENNGRSFEEEVARFMELLRNCGYRVEAW--TRLPYL 264 (288)
T ss_pred CCCcCCchHHHHhcCccHHHHHHHHHHHHHhcCchhhhh--hcCCee
Confidence 2211111 11 14443 457788999988652 334454
|
|
| >PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ] | Back alignment and domain information |
|---|
Probab=95.65 E-value=0.088 Score=51.01 Aligned_cols=64 Identities=20% Similarity=0.182 Sum_probs=40.0
Q ss_pred HHHHhcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHH
Q 015966 153 RNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMM 224 (397)
Q Consensus 153 ~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML 224 (397)
+.-+|-|... |. .+-..|..-+......++.+||-+|+.+|..+--++.- .=.|.|+|||+-+.
T Consensus 45 ~~eYR~W~P~----RS----KLaAai~~Gl~~~~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~ 111 (229)
T PF01269_consen 45 KVEYRVWNPF----RS----KLAAAILKGLENIPIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSM 111 (229)
T ss_dssp -EEEEEE-TT----T-----HHHHHHHTT-S--S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHH
T ss_pred ccceeecCch----hh----HHHHHHHcCccccCCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhH
Confidence 3357889864 32 45556655444333447889999999999987766654 23699999999653
|
It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A .... |
| >PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2 | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.11 Score=51.61 Aligned_cols=103 Identities=15% Similarity=0.230 Sum_probs=61.3
Q ss_pred CCCeEEEecCC-CChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCcccccc
Q 015966 189 SPPACLVPGAG-LGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~i 264 (397)
...||+-+||| +---+..||++ |..|.++|.++..+..|+-+.+...
T Consensus 120 ~p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~----------------------------- 170 (276)
T PF03059_consen 120 PPSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDL----------------------------- 170 (276)
T ss_dssp ---EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH--------------------------------
T ss_pred ccceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcc-----------------------------
Confidence 34599999999 66668888875 4678999999999998876654110
Q ss_pred CCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC-ChhhHHHHHHHHHHhccCCcEEE
Q 015966 265 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID-TAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 265 PDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID-ta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
.+..+|++..+|..++.. .-..||+|+-.-..- ++++=.+.|+.+.+.++||.+.+
T Consensus 171 --------~L~~~m~f~~~d~~~~~~---dl~~~DvV~lAalVg~~~e~K~~Il~~l~~~m~~ga~l~ 227 (276)
T PF03059_consen 171 --------GLSKRMSFITADVLDVTY---DLKEYDVVFLAALVGMDAEPKEEILEHLAKHMAPGARLV 227 (276)
T ss_dssp --------HH-SSEEEEES-GGGG-G---G----SEEEE-TT-S----SHHHHHHHHHHHS-TTSEEE
T ss_pred --------cccCCeEEEecchhcccc---ccccCCEEEEhhhcccccchHHHHHHHHHhhCCCCcEEE
Confidence 123458999999877632 136899998665543 45566789999999999999888
|
5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B. |
| >PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised | Back alignment and domain information |
|---|
Probab=95.63 E-value=0.024 Score=55.10 Aligned_cols=81 Identities=26% Similarity=0.264 Sum_probs=48.8
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCC
Q 015966 191 PACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA 270 (397)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~ 270 (397)
.+|||.=+|+|+.|+-||..|++|+|+|-|+.+.+.-..-|++....... +.
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~------------------~~---------- 128 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPEL------------------LA---------- 128 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTT------------------HH----------
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHh------------------HH----------
Confidence 48999999999999999999999999999998876555444433211000 00
Q ss_pred CCCCCCcceeEecccccccCCCCCCCCccEEEE
Q 015966 271 SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT 303 (397)
Q Consensus 271 ~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT 303 (397)
....+|.++.+|..++.. ...++||+|.-
T Consensus 129 --~~~~ri~l~~~d~~~~L~--~~~~s~DVVY~ 157 (234)
T PF04445_consen 129 --EAMRRIQLIHGDALEYLR--QPDNSFDVVYF 157 (234)
T ss_dssp --HHHHHEEEEES-CCCHCC--CHSS--SEEEE
T ss_pred --HHHhCCEEEcCCHHHHHh--hcCCCCCEEEE
Confidence 011358999999988643 23589999953
|
; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A. |
| >PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e | Back alignment and domain information |
|---|
Probab=95.55 E-value=0.048 Score=52.90 Aligned_cols=37 Identities=22% Similarity=0.144 Sum_probs=34.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~ 225 (397)
++..||++|+|+|.++.+|++.|-.|+++|....+..
T Consensus 30 ~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~ 66 (262)
T PF00398_consen 30 EGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAK 66 (262)
T ss_dssp TTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHH
T ss_pred CCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHH
Confidence 5679999999999999999999999999999998764
|
g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A .... |
| >COG4076 Predicted RNA methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.38 E-value=0.068 Score=50.98 Aligned_cols=114 Identities=21% Similarity=0.212 Sum_probs=79.0
Q ss_pred ChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCcccc
Q 015966 163 GKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNI 242 (397)
Q Consensus 163 G~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~I 242 (397)
+..||-+.|.-.++...+ ..+-|+|+|+|-|++--|+.--.|.++|..+.-...|. .
T Consensus 16 ~D~eRlavF~~ai~~va~----------d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~--------e----- 72 (252)
T COG4076 16 RDVERLAVFTSAIAEVAE----------DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAE--------E----- 72 (252)
T ss_pred hhHHHHHHHHHHHHHHhh----------hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhh--------h-----
Confidence 456888777766666643 46899999999999999999889999999996644332 0
Q ss_pred ccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhH---HHHHHH
Q 015966 243 YPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNI---VEYIEI 319 (397)
Q Consensus 243 yPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni---~~yi~~ 319 (397)
.+++|- -.+.+++.||.++ |.+ +.-|+| .|=.|||+-=. .-.+..
T Consensus 73 ------------------N~~v~g--------~~n~evv~gDA~~-y~f----e~ADvv-icEmlDTaLi~E~qVpV~n~ 120 (252)
T COG4076 73 ------------------NLHVPG--------DVNWEVVVGDARD-YDF----ENADVV-ICEMLDTALIEEKQVPVINA 120 (252)
T ss_pred ------------------cCCCCC--------CcceEEEeccccc-ccc----ccccee-HHHHhhHHhhcccccHHHHH
Confidence 112221 1348899999887 442 345765 56678887422 235666
Q ss_pred HHHhccCCcEEE
Q 015966 320 ISRILKDGGVWI 331 (397)
Q Consensus 320 I~~~LKPGG~wI 331 (397)
+-+.||-.|..|
T Consensus 121 vleFLr~d~tii 132 (252)
T COG4076 121 VLEFLRYDPTII 132 (252)
T ss_pred HHHHhhcCCccc
Confidence 777788888887
|
|
| >COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=95.29 E-value=0.11 Score=48.95 Aligned_cols=40 Identities=23% Similarity=-0.029 Sum_probs=34.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~ 228 (397)
.+.+|||+=+|+|-|+.|-+.+|. .|+.+|.+...+.+.+
T Consensus 43 ~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~ 83 (187)
T COG0742 43 EGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILK 83 (187)
T ss_pred CCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHH
Confidence 467999999999999999999996 6999999998775443
|
|
| >KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=95.07 E-value=0.28 Score=46.50 Aligned_cols=139 Identities=13% Similarity=0.190 Sum_probs=81.3
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHHhhhhcccccCcccccccccccc
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~S 250 (397)
+++.|++-..........-+|++|||.|-..-.|++. | .-..+.|+++..+.+..-- .+.|
T Consensus 28 LlDaLekd~~eL~~~~~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~T----A~~n------------ 91 (209)
T KOG3191|consen 28 LLDALEKDAAELKGHNPEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLET----ARCN------------ 91 (209)
T ss_pred HHHHHHHHHHHHhhcCceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHH----HHhc------------
Confidence 5555554221111123557999999999998888876 3 3356999999998764311 1111
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--eccC------------------Ch
Q 015966 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFID------------------TA 310 (397)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFID------------------ta 310 (397)
.+ ++..+..|+..-.. .++.|+++-+ |-.+ +.
T Consensus 92 ----------~~--------------~~~~V~tdl~~~l~----~~~VDvLvfNPPYVpt~~~~i~~~~i~~a~aGG~~G 143 (209)
T KOG3191|consen 92 ----------RV--------------HIDVVRTDLLSGLR----NESVDVLVFNPPYVPTSDEEIGDEGIASAWAGGKDG 143 (209)
T ss_pred ----------CC--------------ccceeehhHHhhhc----cCCccEEEECCCcCcCCcccchhHHHHHHHhcCcch
Confidence 01 13445666655432 2667776543 2111 11
Q ss_pred hh-HHHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 311 HN-IVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 311 ~N-i~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
.. +...+..+-.+|.|.|+|--+ .-- .=-.+||.+++++.||....
T Consensus 144 r~v~d~ll~~v~~iLSp~Gv~Ylv----~~~------------~N~p~ei~k~l~~~g~~~~~ 190 (209)
T KOG3191|consen 144 REVTDRLLPQVPDILSPRGVFYLV----ALR------------ANKPKEILKILEKKGYGVRI 190 (209)
T ss_pred HHHHHHHHhhhhhhcCcCceEEee----ehh------------hcCHHHHHHHHhhcccceeE
Confidence 11 234666777888899988731 111 12357888899999997654
|
|
| >PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [] | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.065 Score=46.55 Aligned_cols=73 Identities=16% Similarity=0.297 Sum_probs=47.1
Q ss_pred hHHHHHH-HHHHhcccccChhHHhhchH--HHHHHHHhhCCCCC-CCCCCeEEEecCCCChhHHHHHHcCCeEEEEeC
Q 015966 146 DKVRCII-RNIVRDWAAEGKTERDQCYK--PILEELDALFPNRS-KESPPACLVPGAGLGRLALEISHLGFISQGNEF 219 (397)
Q Consensus 146 dkv~stL-~q~~RDWS~eG~~ER~~~y~--pIl~~L~~~~p~~~-~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~ 219 (397)
.+++..- +.++..|.+--..+ +-.|. -|..+|..+..... ..+...-.|+|||.|-|++-|.+.||.=.|+|.
T Consensus 12 ~~LK~kYa~~lv~~W~E~TdP~-K~VfEDlaIAAyLi~LW~~~~~~~~~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~ 88 (112)
T PF07757_consen 12 QRLKEKYARWLVDNWPESTDPQ-KHVFEDLAIAAYLIELWRDMYGEQKFQGFVDLGCGNGLLVYILNSEGYPGWGIDA 88 (112)
T ss_pred HHHHHHHHHHHHHhCcccCCch-hhHHHHHHHHHHHHHHHhcccCCCCCCceEEccCCchHHHHHHHhCCCCcccccc
Confidence 3444444 56778896432222 22232 24455555443221 135678999999999999999999999999985
|
; GO: 0008168 methyltransferase activity |
| >PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G | Back alignment and domain information |
|---|
Probab=95.06 E-value=0.13 Score=48.09 Aligned_cols=119 Identities=18% Similarity=0.199 Sum_probs=78.4
Q ss_pred eEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCC
Q 015966 192 ACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (397)
Q Consensus 192 rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p 269 (397)
+|||+|+|-|-.+.-||-. -.+++-+|-..--..+-+.+... ..+
T Consensus 51 ~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~----------------------------L~L----- 97 (184)
T PF02527_consen 51 KVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRE----------------------------LGL----- 97 (184)
T ss_dssp EEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHH----------------------------HT------
T ss_pred eEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHH----------------------------hCC-----
Confidence 8999999999998888766 46799999988776543332211 111
Q ss_pred CCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE-ecCCcchhhhccCCCC
Q 015966 270 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN-LGPLLYHFADLYGQED 348 (397)
Q Consensus 270 ~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN-~GPLlYh~~d~~g~~~ 348 (397)
.++..+.+...+ . ...+.||+|++--+- .+...++-+..+||+||.+|- -||-
T Consensus 98 ------~nv~v~~~R~E~-~---~~~~~fd~v~aRAv~----~l~~l~~~~~~~l~~~G~~l~~KG~~------------ 151 (184)
T PF02527_consen 98 ------SNVEVINGRAEE-P---EYRESFDVVTARAVA----PLDKLLELARPLLKPGGRLLAYKGPD------------ 151 (184)
T ss_dssp ------SSEEEEES-HHH-T---TTTT-EEEEEEESSS----SHHHHHHHHGGGEEEEEEEEEEESS-------------
T ss_pred ------CCEEEEEeeecc-c---ccCCCccEEEeehhc----CHHHHHHHHHHhcCCCCEEEEEcCCC------------
Confidence 136667777655 1 235899999876553 255778888899999999995 2331
Q ss_pred CccccCCHHHHHHHHHhCCCEEEE
Q 015966 349 EMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 349 ~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
.+=..++.+..++..|.+...
T Consensus 152 ---~~~El~~~~~~~~~~~~~~~~ 172 (184)
T PF02527_consen 152 ---AEEELEEAKKAWKKLGLKVLS 172 (184)
T ss_dssp ----HHHHHTHHHHHHCCCEEEEE
T ss_pred ---hHHHHHHHHhHHHHhCCEEee
Confidence 112245566677777777766
|
Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A. |
| >PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2 | Back alignment and domain information |
|---|
Probab=94.71 E-value=0.074 Score=54.13 Aligned_cols=52 Identities=13% Similarity=0.047 Sum_probs=41.0
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (397)
.+++.+.+.++.. +.+|||+=||+|.++..||+.+-.|.|+|.+..|+..|+
T Consensus 184 ~l~~~~~~~l~~~----~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~ 235 (352)
T PF05958_consen 184 KLYEQALEWLDLS----KGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDAR 235 (352)
T ss_dssp HHHHHHHHHCTT-----TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHH
T ss_pred HHHHHHHHHhhcC----CCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHH
Confidence 4566666655432 238999999999999999999999999999999998877
|
1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B. |
| >PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins | Back alignment and domain information |
|---|
Probab=94.57 E-value=1 Score=42.80 Aligned_cols=122 Identities=19% Similarity=0.155 Sum_probs=77.0
Q ss_pred EEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCC
Q 015966 193 CLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA 270 (397)
Q Consensus 193 VLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~ 270 (397)
|.|.||-=|.|+..|+++|. .|.++|++.--|..|+-.+...
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~------------------------------------ 44 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKY------------------------------------ 44 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHT------------------------------------
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHc------------------------------------
Confidence 68999999999999999998 6999999999998776433211
Q ss_pred CCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCCc
Q 015966 271 SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEM 350 (397)
Q Consensus 271 ~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~ 350 (397)
...+.+....||=++... ..+..|+||-+=. -+.-|.+-|+.....++..-.|| +-|.
T Consensus 45 --~l~~~i~~rlgdGL~~l~---~~e~~d~ivIAGM--GG~lI~~ILe~~~~~~~~~~~lI-LqP~-------------- 102 (205)
T PF04816_consen 45 --GLEDRIEVRLGDGLEVLK---PGEDVDTIVIAGM--GGELIIEILEAGPEKLSSAKRLI-LQPN-------------- 102 (205)
T ss_dssp --T-TTTEEEEE-SGGGG-----GGG---EEEEEEE---HHHHHHHHHHTGGGGTT--EEE-EEES--------------
T ss_pred --CCcccEEEEECCcccccC---CCCCCCEEEEecC--CHHHHHHHHHhhHHHhccCCeEE-EeCC--------------
Confidence 112347778888555433 1233688876522 11124455666666666555666 2221
Q ss_pred cccCCHHHHHHHHHhCCCEEEEEee
Q 015966 351 SIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 351 ~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
-...+|++.|.+.||.++.|..
T Consensus 103 ---~~~~~LR~~L~~~gf~I~~E~l 124 (205)
T PF04816_consen 103 ---THAYELRRWLYENGFEIIDEDL 124 (205)
T ss_dssp ---S-HHHHHHHHHHTTEEEEEEEE
T ss_pred ---CChHHHHHHHHHCCCEEEEeEE
Confidence 3578999999999999999863
|
; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B. |
| >PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3) | Back alignment and domain information |
|---|
Probab=94.22 E-value=0.017 Score=50.14 Aligned_cols=77 Identities=21% Similarity=0.374 Sum_probs=41.6
Q ss_pred CccEEEEee---ccC--Ch-hhHHHHHHHHHHhccCCcEEEEecCCcch-hhhccCCC-----CCccccCCHHHHHHHHH
Q 015966 297 AWDAVVTCF---FID--TA-HNIVEYIEIISRILKDGGVWINLGPLLYH-FADLYGQE-----DEMSIELSLEDVKRVAL 364 (397)
Q Consensus 297 ~fD~VvT~F---FID--ta-~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh-~~d~~g~~-----~~~~ieLS~EEl~~ll~ 364 (397)
+||+|++.= +|. -. .-+..+|+.|+..|+|||++| +-|--|. |...-... .-..+++-++++..+|.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~li-lEpQ~w~sY~~~~~~~~~~~~n~~~i~lrP~~F~~~L~ 79 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILI-LEPQPWKSYKKAKRLSEEIRENYKSIKLRPDQFEDYLL 79 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEE-EE---HHHHHTTTTS-HHHHHHHHH----GGGHHHHHT
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEE-EeCCCcHHHHHHhhhhHHHHhHHhceEEChHHHHHHHH
Confidence 478876541 222 22 338899999999999999999 4555443 21110000 01257788889999888
Q ss_pred h--CCCEEEEEe
Q 015966 365 H--YGFEFEKEK 374 (397)
Q Consensus 365 ~--~GFeii~e~ 374 (397)
. +||...++-
T Consensus 80 ~~evGF~~~e~~ 91 (110)
T PF06859_consen 80 EPEVGFSSVEEL 91 (110)
T ss_dssp STTT---EEEEE
T ss_pred hcccceEEEEEc
Confidence 6 799987643
|
Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B. |
| >COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=94.18 E-value=0.23 Score=47.52 Aligned_cols=130 Identities=18% Similarity=0.118 Sum_probs=77.6
Q ss_pred HHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe---EEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 176 EELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI---SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 176 ~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~---V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
.+|.+.+.- -+++.+|+|+||--|.-+..++++.-. |.|+|+-+--.
T Consensus 34 ~el~~k~~i--~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~---------------------------- 83 (205)
T COG0293 34 LELNEKFKL--FKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP---------------------------- 83 (205)
T ss_pred HHHHHhcCe--ecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc----------------------------
Confidence 344444432 236889999999999999998887443 88888765110
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCC-----CCCCCCccEEEEee--------ccCChhh---HHHH
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD-----PSQVGAWDAVVTCF--------FIDTAHN---IVEY 316 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~-----~~~~~~fD~VvT~F--------FIDta~N---i~~y 316 (397)
+ .++.+++|||++--.. .......|+|++=- =+|.+.- ....
T Consensus 84 -----------~-----------~~V~~iq~d~~~~~~~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a 141 (205)
T COG0293 84 -----------I-----------PGVIFLQGDITDEDTLEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELA 141 (205)
T ss_pred -----------C-----------CCceEEeeeccCccHHHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHH
Confidence 1 1267788888752110 01123469998632 1333221 1124
Q ss_pred HHHHHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 317 IEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 317 i~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
++.+..+|+|||.|+.- .| .. =..+++...+++ .|+.++-.
T Consensus 142 ~~~a~~vL~~~G~fv~K---~f--qg-----------~~~~~~l~~~~~-~F~~v~~~ 182 (205)
T COG0293 142 LEFALEVLKPGGSFVAK---VF--QG-----------EDFEDLLKALRR-LFRKVKIF 182 (205)
T ss_pred HHHHHHeeCCCCeEEEE---EE--eC-----------CCHHHHHHHHHH-hhceeEEe
Confidence 56666899999999961 11 11 124566666655 58777744
|
|
| >COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=94.11 E-value=0.45 Score=49.37 Aligned_cols=106 Identities=13% Similarity=0.238 Sum_probs=73.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe-----------------------------------------EEEEeCCHHHHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFI-----------------------------------------SQGNEFSYYMMICS 227 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~-----------------------------------------V~GnD~S~~ML~~s 227 (397)
+...++||=||.|.++.|.|.+|-+ ..|.|++.-|+..|
T Consensus 191 ~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~~A 270 (381)
T COG0116 191 PDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIEGA 270 (381)
T ss_pred CCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHHHH
Confidence 4468999999999999999999842 56999999999888
Q ss_pred HhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--e
Q 015966 228 SFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--F 305 (397)
Q Consensus 228 ~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--F 305 (397)
+ .| ++. ++..+.+.|.++|+..+.. + -+.+|+||++ |
T Consensus 271 k--~N-A~~-----------------------------------AGv~d~I~f~~~d~~~l~~-~--~~~~gvvI~NPPY 309 (381)
T COG0116 271 K--AN-ARA-----------------------------------AGVGDLIEFKQADATDLKE-P--LEEYGVVISNPPY 309 (381)
T ss_pred H--HH-HHh-----------------------------------cCCCceEEEEEcchhhCCC-C--CCcCCEEEeCCCc
Confidence 7 22 111 1223448999999998754 2 1789999998 2
Q ss_pred --ccCChhhHHH----HHHHHHHhccCCcEEEEecC
Q 015966 306 --FIDTAHNIVE----YIEIISRILKDGGVWINLGP 335 (397)
Q Consensus 306 --FIDta~Ni~~----yi~~I~~~LKPGG~wIN~GP 335 (397)
=|.+...+.. +.+++.+.++--+.+|-.++
T Consensus 310 GeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 310 GERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred chhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 2544433442 34455566666667775443
|
|
| >KOG2730 consensus Methylase [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.02 E-value=0.06 Score=52.34 Aligned_cols=40 Identities=10% Similarity=0.156 Sum_probs=36.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (397)
....|+|.-||.|.-+...|.+|-.|.++|+++.-+..|+
T Consensus 94 ~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~Ak 133 (263)
T KOG2730|consen 94 NAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACAR 133 (263)
T ss_pred CcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHh
Confidence 3457999999999999999999999999999999888776
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=93.97 E-value=0.2 Score=48.07 Aligned_cols=77 Identities=13% Similarity=0.170 Sum_probs=51.1
Q ss_pred eeEecccccccCCCCCCCCccEEEEe--eccCC----h---------hhHHHHHHHHHHhccCCcEEEEecCCcchhhhc
Q 015966 279 SMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDT----A---------HNIVEYIEIISRILKDGGVWINLGPLLYHFADL 343 (397)
Q Consensus 279 s~~~GDF~ely~~~~~~~~fD~VvT~--FFIDt----a---------~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~ 343 (397)
.+..||.+++.. .-.++++|+|+|- |++.. . +=+.+++++++++|||||.++.+... .
T Consensus 3 ~l~~gD~le~l~-~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if~~~----~-- 75 (227)
T PRK13699 3 RFILGNCIDVMA-RFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSFYGW----N-- 75 (227)
T ss_pred eEEechHHHHHH-hCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEEecc----c--
Confidence 467888887632 1236889999997 55420 0 11346789999999999999863221 0
Q ss_pred cCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 344 YGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 344 ~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
....+..++++.||.+...
T Consensus 76 -----------~~~~~~~al~~~GF~l~~~ 94 (227)
T PRK13699 76 -----------RVDRFMAAWKNAGFSVVGH 94 (227)
T ss_pred -----------cHHHHHHHHHHCCCEEeeE
Confidence 1234566788999997663
|
|
| >COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=93.92 E-value=0.76 Score=44.19 Aligned_cols=141 Identities=16% Similarity=0.182 Sum_probs=86.9
Q ss_pred CCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 190 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
..+|+|+|+|.|-.+.-||-. .-.|+-+|-..-=. +|+-.-.. ....
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~---~FL~~~~~-------------------------eL~L--- 116 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKI---AFLREVKK-------------------------ELGL--- 116 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHH---HHHHHHHH-------------------------HhCC---
Confidence 579999999999999987733 44577777554332 23221111 0111
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCC-ccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCC
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGA-WDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~-fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~ 346 (397)
+++.++.+-..++-. ..+ ||+|++--| .++...++-...+||+||.++. |.+...
T Consensus 117 --------~nv~i~~~RaE~~~~----~~~~~D~vtsRAv----a~L~~l~e~~~pllk~~g~~~~-----~k~~~~--- 172 (215)
T COG0357 117 --------ENVEIVHGRAEEFGQ----EKKQYDVVTSRAV----ASLNVLLELCLPLLKVGGGFLA-----YKGLAG--- 172 (215)
T ss_pred --------CCeEEehhhHhhccc----ccccCcEEEeehc----cchHHHHHHHHHhcccCCcchh-----hhHHhh---
Confidence 235666666555321 123 999976443 2355778888899999999884 332211
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEEeecCCCCCCCcccccccc
Q 015966 347 EDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQVS 391 (397)
Q Consensus 347 ~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~~~Y~~d~~sm~~~~ 391 (397)
.=-..|.+..+...||.+++......++...++-+.-..
T Consensus 173 ------~~e~~e~~~a~~~~~~~~~~~~~~~~p~~~~~r~l~ii~ 211 (215)
T COG0357 173 ------KDELPEAEKAILPLGGQVEKVFSLTVPELDGERHLVIIR 211 (215)
T ss_pred ------hhhHHHHHHHHHhhcCcEEEEEEeecCCCCCceEEEEEe
Confidence 112456777788889999997767667666555554433
|
|
| >TIGR01444 fkbM_fam methyltransferase, FkbM family | Back alignment and domain information |
|---|
Probab=93.84 E-value=0.099 Score=44.94 Aligned_cols=37 Identities=16% Similarity=-0.000 Sum_probs=32.8
Q ss_pred eEEEecCCCChhHHHHHHcCCe--EEEEeCCHHHHHHHH
Q 015966 192 ACLVPGAGLGRLALEISHLGFI--SQGNEFSYYMMICSS 228 (397)
Q Consensus 192 rVLvPGCGlGRLa~eLA~~Gf~--V~GnD~S~~ML~~s~ 228 (397)
.|||+|||.|..+..++++|.. |.++|.+..|+...+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~ 39 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILE 39 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHH
Confidence 4899999999999999999875 999999999987544
|
Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548. |
| >PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional | Back alignment and domain information |
|---|
Probab=93.76 E-value=0.33 Score=52.20 Aligned_cols=117 Identities=17% Similarity=0.188 Sum_probs=66.4
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 188 ESPPACLVPGAGL-GRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 188 ~~~~rVLvPGCGl-GRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
.++.+||+.|||. |..+...|+. |..|.+.|.+..-+..++-+ .+ ....+-+ ..++....
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aesl--GA---~~v~i~~---------~e~~~~~~---- 224 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESM--GA---EFLELDF---------EEEGGSGD---- 224 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHc--CC---eEEEecc---------cccccccc----
Confidence 3688999999996 6667666665 99999999999888766521 11 0000000 00000000
Q ss_pred CCCCCCCCCCCcceeEecccc----cccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEec
Q 015966 266 DIHPASAGITEGFSMCGGDFV----EVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLG 334 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~----ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~G 334 (397)
.+ ..-.-.|+. +.+. ..-..+|+|+++--+...+...-..+...+.+||||+.|.+|
T Consensus 225 -------gy---a~~~s~~~~~~~~~~~~--~~~~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg 285 (509)
T PRK09424 225 -------GY---AKVMSEEFIKAEMALFA--EQAKEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLA 285 (509)
T ss_pred -------ch---hhhcchhHHHHHHHHHH--hccCCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEc
Confidence 00 000001211 1111 112468999999887654333333589999999999999754
|
|
| >KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=93.69 E-value=0.18 Score=54.40 Aligned_cols=116 Identities=21% Similarity=0.204 Sum_probs=76.3
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHH------HcCCeEEEEeCCHHHHHHHHhhhhcccccCcccccccc
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEIS------HLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWI 246 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA------~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi 246 (397)
.|+..|..+.|+........|+++|+|.|=|+...- .+-..+.++|-.+-.+..-. |..
T Consensus 351 Ai~~AL~Drvpd~~a~~~tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~---~~n------------ 415 (649)
T KOG0822|consen 351 AILKALLDRVPDESAKTTTVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQ---NRN------------ 415 (649)
T ss_pred HHHHHHHhhCcccccCceEEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhh---hhc------------
Confidence 488899999887654445677899999999865432 22345666666554433211 100
Q ss_pred ccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee---ccCChhhHHHHHHHHHHh
Q 015966 247 HSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRI 323 (397)
Q Consensus 247 ~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yi~~I~~~ 323 (397)
.+ .-.+.+.++.+||+++-. | .++-|++|+-. |=|..- =.+.|..+.+.
T Consensus 416 --------~~----------------~W~~~Vtii~~DMR~w~a-p--~eq~DI~VSELLGSFGDNEL-SPECLDG~q~f 467 (649)
T KOG0822|consen 416 --------FE----------------CWDNRVTIISSDMRKWNA-P--REQADIIVSELLGSFGDNEL-SPECLDGAQKF 467 (649)
T ss_pred --------hh----------------hhcCeeEEEeccccccCC-c--hhhccchHHHhhccccCccC-CHHHHHHHHhh
Confidence 00 012347889999999742 2 47889998764 544321 23899999999
Q ss_pred ccCCcEEE
Q 015966 324 LKDGGVWI 331 (397)
Q Consensus 324 LKPGG~wI 331 (397)
|||.|+.|
T Consensus 468 LkpdgIsI 475 (649)
T KOG0822|consen 468 LKPDGISI 475 (649)
T ss_pred cCCCceEc
Confidence 99999999
|
|
| >COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.61 E-value=1.4 Score=43.25 Aligned_cols=150 Identities=17% Similarity=0.174 Sum_probs=89.9
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
.+...|+. |.-. -++..+||+|+-||.++--+-++|. .|.|+|.++--|.- -|
T Consensus 66 KL~~ale~-F~l~--~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~---kL-------------------- 119 (245)
T COG1189 66 KLEKALEE-FELD--VKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHW---KL-------------------- 119 (245)
T ss_pred HHHHHHHh-cCcC--CCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCH---hH--------------------
Confidence 45555554 4322 2678999999999999999999997 69999999955421 01
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe-eccCChhhHHHHHHHHHHhccCCcEE
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-FFIDTAHNIVEYIEIISRILKDGGVW 330 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~-FFIDta~Ni~~yi~~I~~~LKPGG~w 330 (397)
+.+ .|- ..|=.-+++.+... .-.+..|.|++- =||. +...+..+..+|+|||..
T Consensus 120 ---R~d-~rV----------------~~~E~tN~r~l~~~-~~~~~~d~~v~DvSFIS----L~~iLp~l~~l~~~~~~~ 174 (245)
T COG1189 120 ---RND-PRV----------------IVLERTNVRYLTPE-DFTEKPDLIVIDVSFIS----LKLILPALLLLLKDGGDL 174 (245)
T ss_pred ---hcC-CcE----------------EEEecCChhhCCHH-HcccCCCeEEEEeehhh----HHHHHHHHHHhcCCCceE
Confidence 000 000 12222233332210 112355776653 3554 456789999999999999
Q ss_pred EE-ecCCcchhhhccCC----CCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 331 IN-LGPLLYHFADLYGQ----EDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 331 IN-~GPLlYh~~d~~g~----~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
|- +=|.+-.-.+.-+. .+........+++...++..||.+...
T Consensus 175 v~LvKPQFEagr~~v~kkGvv~d~~~~~~v~~~i~~~~~~~g~~~~gl 222 (245)
T COG1189 175 VLLVKPQFEAGREQVGKKGVVRDPKLHAEVLSKIENFAKELGFQVKGL 222 (245)
T ss_pred EEEecchhhhhhhhcCcCceecCcchHHHHHHHHHHHHhhcCcEEeee
Confidence 96 33432111111110 111233567899999999999999874
|
|
| >COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.42 E-value=1.1 Score=45.98 Aligned_cols=41 Identities=15% Similarity=-0.042 Sum_probs=33.8
Q ss_pred CCCCeEEEecCCCChhHHHHHHcCC----eEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGAGLGRLALEISHLGF----ISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGCGlGRLa~eLA~~Gf----~V~GnD~S~~ML~~s~ 228 (397)
.++.+|||+.++-|.=+-.||.+.- .|+++|.|..=|-.-+
T Consensus 155 ~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~ 199 (355)
T COG0144 155 KPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLR 199 (355)
T ss_pred CCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHH
Confidence 4778999999999999888888865 4899999997765444
|
|
| >KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=93.29 E-value=0.41 Score=47.95 Aligned_cols=132 Identities=21% Similarity=0.202 Sum_probs=83.2
Q ss_pred cccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHHhhhhcc
Q 015966 158 DWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHT 234 (397)
Q Consensus 158 DWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~fiLn~~ 234 (397)
+|.-.=..--+..|.|=++.|...+.- +++.+||+-|.|.|.+.+.||+.= =.+...||-..-. ...+.
T Consensus 77 LWTl~LphRTQI~Yt~Dia~I~~~L~i---~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra---~ka~e-- 148 (314)
T KOG2915|consen 77 LWTLALPHRTQILYTPDIAMILSMLEI---RPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRA---EKALE-- 148 (314)
T ss_pred HhhhhccCcceEEecccHHHHHHHhcC---CCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHH---HHHHH--
Confidence 354333333456788878888777642 478999999999999999999872 2577788843222 11111
Q ss_pred cccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHH
Q 015966 235 ETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIV 314 (397)
Q Consensus 235 ~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~ 314 (397)
+|. .--++ +++.+..-|.... ++......+|+| |||-. +.-
T Consensus 149 ----eFr-------------------~hgi~----------~~vt~~hrDVc~~-GF~~ks~~aDaV----FLDlP-aPw 189 (314)
T KOG2915|consen 149 ----EFR-------------------EHGIG----------DNVTVTHRDVCGS-GFLIKSLKADAV----FLDLP-APW 189 (314)
T ss_pred ----HHH-------------------HhCCC----------cceEEEEeecccC-CccccccccceE----EEcCC-Chh
Confidence 121 11122 2355666565432 222224667777 67863 467
Q ss_pred HHHHHHHHhccCCc-EEEEecCC
Q 015966 315 EYIEIISRILKDGG-VWINLGPL 336 (397)
Q Consensus 315 ~yi~~I~~~LKPGG-~wIN~GPL 336 (397)
+.+.-.+++||.+| ++.+|-|-
T Consensus 190 ~AiPha~~~lk~~g~r~csFSPC 212 (314)
T KOG2915|consen 190 EAIPHAAKILKDEGGRLCSFSPC 212 (314)
T ss_pred hhhhhhHHHhhhcCceEEeccHH
Confidence 88999999999866 88888774
|
|
| >COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=93.08 E-value=0.66 Score=48.32 Aligned_cols=110 Identities=18% Similarity=0.186 Sum_probs=73.0
Q ss_pred CCCCeEEEecCCCChhHHHHHHcC-C-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 188 ESPPACLVPGAGLGRLALEISHLG-F-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 188 ~~~~rVLvPGCGlGRLa~eLA~~G-f-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
+.-.+||++|-|-|--++||-+.- + +++-+|+.+.|+..++...-- ...| +-+.
T Consensus 288 ~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vl-r~~N-------------~~sf---------- 343 (508)
T COG4262 288 RGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVL-RALN-------------QGSF---------- 343 (508)
T ss_pred cccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHh-hhhc-------------cCCc----------
Confidence 355699999999999999999874 5 699999999999987721100 0001 1011
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhh-H-----HHHHHHHHHhccCCcEEEE
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN-I-----VEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N-i-----~~yi~~I~~~LKPGG~wIN 332 (397)
...+++.+..|...+-. ...+.||+|+--+ +|.... + .++.....+.|+++|++|-
T Consensus 344 --------~dpRv~Vv~dDAf~wlr--~a~~~fD~vIVDl-~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~Vv 405 (508)
T COG4262 344 --------SDPRVTVVNDDAFQWLR--TAADMFDVVIVDL-PDPSTPSIGRLYSVEFYRLLSRHLAETGLMVV 405 (508)
T ss_pred --------cCCeeEEEeccHHHHHH--hhcccccEEEEeC-CCCCCcchhhhhhHHHHHHHHHhcCcCceEEE
Confidence 11247777778777644 2357899986533 332211 1 2567777889999999994
|
|
| >cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1 | Back alignment and domain information |
|---|
Probab=93.02 E-value=0.45 Score=48.15 Aligned_cols=40 Identities=18% Similarity=0.061 Sum_probs=33.6
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (397)
++.+||+.|||. |.++..+|++ |. .|.+++.+..++..++
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~ 226 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMAR 226 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence 567899999998 9999999877 77 5999999999986554
|
Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T |
| >cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members | Back alignment and domain information |
|---|
Probab=92.99 E-value=0.65 Score=44.80 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=32.1
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMICS 227 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~V~GnD~S~~ML~~s 227 (397)
++.+||+.|+| +|.++.++|++ |..|.+.+-|..++..+
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~ 205 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELA 205 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHH
Confidence 56799998877 58999888884 99999999999887543
|
This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio |
| >PRK09880 L-idonate 5-dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=92.83 E-value=0.36 Score=47.74 Aligned_cols=40 Identities=18% Similarity=0.179 Sum_probs=31.2
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (397)
++.+||+.||| +|.++..+|+. |. .|.+.|.+..-+..++
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~ 211 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAR 211 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHH
Confidence 46799999876 57778888876 88 5899999988776544
|
|
| >cd08232 idonate-5-DH L-idonate 5-dehydrogenase | Back alignment and domain information |
|---|
Probab=92.58 E-value=0.58 Score=45.64 Aligned_cols=38 Identities=21% Similarity=0.260 Sum_probs=30.5
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHHH
Q 015966 189 SPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMIC 226 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~-Gf-~V~GnD~S~~ML~~ 226 (397)
++.+||+-|||. |..+..+|+. |+ .+.+.+-|..+...
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~ 205 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAV 205 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHH
Confidence 567899988876 8888888764 98 79999998887653
|
L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai |
| >PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D | Back alignment and domain information |
|---|
Probab=92.55 E-value=0.052 Score=44.74 Aligned_cols=50 Identities=24% Similarity=0.327 Sum_probs=34.7
Q ss_pred cceeEecccccccCCCCCCCCccEEEEeeccCC---hhhHHHHHHHHHHhccCCcEEE
Q 015966 277 GFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT---AHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 277 ~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDt---a~Ni~~yi~~I~~~LKPGG~wI 331 (397)
++.++.||+.+.... ...+++|+| |||- .+.+...++.+...|+|||+.|
T Consensus 50 ~~~~~~g~s~~~l~~-~~~~~~dli----~iDg~H~~~~~~~dl~~~~~~l~~ggviv 102 (106)
T PF13578_consen 50 RVEFIQGDSPDFLPS-LPDGPIDLI----FIDGDHSYEAVLRDLENALPRLAPGGVIV 102 (106)
T ss_dssp TEEEEES-THHHHHH-HHH--EEEE----EEES---HHHHHHHHHHHGGGEEEEEEEE
T ss_pred eEEEEEcCcHHHHHH-cCCCCEEEE----EECCCCCHHHHHHHHHHHHHHcCCCeEEE
Confidence 488999998876421 112456655 6774 4668889999999999999987
|
|
| >cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy) | Back alignment and domain information |
|---|
Probab=92.40 E-value=0.82 Score=47.95 Aligned_cols=39 Identities=15% Similarity=0.083 Sum_probs=29.9
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-cCCeEEEEeCCHHHHHHH
Q 015966 189 SPPACLVPGAGL-GRLALEISH-LGFISQGNEFSYYMMICS 227 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~-~Gf~V~GnD~S~~ML~~s 227 (397)
.+.+|++.|+|. |+.+..+++ .|..|..+|.+..-+..|
T Consensus 201 ~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A 241 (413)
T cd00401 201 AGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQA 241 (413)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHH
Confidence 678999999995 666555554 499999999998665443
|
The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+. |
| >cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology | Back alignment and domain information |
|---|
Probab=92.06 E-value=2.9 Score=41.00 Aligned_cols=37 Identities=22% Similarity=0.220 Sum_probs=32.4
Q ss_pred eEEEecCCCChhHHHHHHcCCeE-EEEeCCHHHHHHHH
Q 015966 192 ACLVPGAGLGRLALEISHLGFIS-QGNEFSYYMMICSS 228 (397)
Q Consensus 192 rVLvPGCGlGRLa~eLA~~Gf~V-~GnD~S~~ML~~s~ 228 (397)
+||++-||.|.+..-|.+.|+++ .++|+....+.+.+
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~ 39 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYE 39 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHH
Confidence 79999999999999999999984 68999999876544
|
Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability. |
| >PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed | Back alignment and domain information |
|---|
Probab=91.54 E-value=0.83 Score=50.01 Aligned_cols=71 Identities=24% Similarity=0.293 Sum_probs=51.3
Q ss_pred cceeEecccccccCCCCCCCCccEEEEeeccC---ChhhH----HHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCC
Q 015966 277 GFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID---TAHNI----VEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDE 349 (397)
Q Consensus 277 ~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID---ta~Ni----~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~ 349 (397)
.+.++.||+.+... .....+|+| |+| .+.|. .++|+.|++++||||+|+. |
T Consensus 148 ~l~l~~gd~~~~~~--~~~~~~d~~----~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t-----~----------- 205 (662)
T PRK01747 148 TLDLWFGDANELLP--QLDARADAW----FLDGFAPAKNPDMWSPNLFNALARLARPGATLAT-----F----------- 205 (662)
T ss_pred EEEEEecCHHHHHH--hccccccEE----EeCCCCCccChhhccHHHHHHHHHHhCCCCEEEE-----e-----------
Confidence 37789999987643 122456766 555 33332 4799999999999999995 2
Q ss_pred ccccCCHHHHHHHHHhCCCEEEEE
Q 015966 350 MSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 350 ~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
-+.--|++-|..+||++.+.
T Consensus 206 ----t~a~~vr~~l~~~GF~v~~~ 225 (662)
T PRK01747 206 ----TSAGFVRRGLQEAGFTVRKV 225 (662)
T ss_pred ----ehHHHHHHHHHHcCCeeeec
Confidence 14457888899999999864
|
|
| >COG4798 Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.52 E-value=0.35 Score=46.41 Aligned_cols=75 Identities=24% Similarity=0.165 Sum_probs=49.7
Q ss_pred CccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCC--C-CccccCCHHHHHHHHHhCCCEEEEE
Q 015966 297 AWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE--D-EMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 297 ~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~--~-~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
++|.+++.-+|.++ +.......+++.|||||+++- .=|-.+ .|.. + ..-..++..-+++..+++||+++.|
T Consensus 130 ~~yhdmh~k~i~~~-~A~~vna~vf~~LKPGGv~~V----~dH~a~-pG~~~~dt~~~~ri~~a~V~a~veaaGFkl~ae 203 (238)
T COG4798 130 QNYHDMHNKNIHPA-TAAKVNAAVFKALKPGGVYLV----EDHRAD-PGSGLSDTITLHRIDPAVVIAEVEAAGFKLEAE 203 (238)
T ss_pred hhhhhhhccccCcc-hHHHHHHHHHHhcCCCcEEEE----Eecccc-CCCChhhhhhhcccChHHHHHHHHhhcceeeee
Confidence 45555555455533 356789999999999999984 223222 1111 1 1123468888999999999999998
Q ss_pred eecC
Q 015966 374 KTIE 377 (397)
Q Consensus 374 ~~i~ 377 (397)
+.|.
T Consensus 204 S~il 207 (238)
T COG4798 204 SEIL 207 (238)
T ss_pred ehhh
Confidence 8654
|
|
| >PF05430 Methyltransf_30: S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR008471 This entry contains several uncharacterised bacterial proteins with no known function | Back alignment and domain information |
|---|
Probab=91.49 E-value=0.17 Score=44.46 Aligned_cols=74 Identities=30% Similarity=0.349 Sum_probs=48.8
Q ss_pred ceeEecccccccCCCCCCCCccEEEEeeccCChhhH----HHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCCcccc
Q 015966 278 FSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNI----VEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIE 353 (397)
Q Consensus 278 ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni----~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ie 353 (397)
+.+..||..+... .....+|+|+-==|- .+.|. .++|+.|+++++|||++.. |.
T Consensus 33 L~L~~gDa~~~l~--~l~~~~Da~ylDgFs-P~~nPelWs~e~~~~l~~~~~~~~~l~T-----ys-------------- 90 (124)
T PF05430_consen 33 LTLWFGDAREMLP--QLDARFDAWYLDGFS-PAKNPELWSEELFKKLARLSKPGGTLAT-----YS-------------- 90 (124)
T ss_dssp EEEEES-HHHHHH--HB-T-EEEEEE-SS--TTTSGGGSSHHHHHHHHHHEEEEEEEEE-----S---------------
T ss_pred EEEEEcHHHHHHH--hCcccCCEEEecCCC-CcCCcccCCHHHHHHHHHHhCCCcEEEE-----ee--------------
Confidence 8899999987543 224678877432111 12222 4799999999999999996 21
Q ss_pred CCHHHHHHHHHhCCCEEEEEe
Q 015966 354 LSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 354 LS~EEl~~ll~~~GFeii~e~ 374 (397)
+..-|++.|..+||++.+..
T Consensus 91 -~a~~Vr~~L~~aGF~v~~~~ 110 (124)
T PF05430_consen 91 -SAGAVRRALQQAGFEVEKVP 110 (124)
T ss_dssp --BHHHHHHHHHCTEEEEEEE
T ss_pred -chHHHHHHHHHcCCEEEEcC
Confidence 12348889999999998754
|
; GO: 0016645 oxidoreductase activity, acting on the CH-NH group of donors, 0055114 oxidation-reduction process; PDB: 2E58_D 3SGL_A 3PVC_A 3AWI_D 3PS9_A 2QY6_A. |
| >TIGR00006 S-adenosyl-methyltransferase MraW | Back alignment and domain information |
|---|
Probab=91.25 E-value=3.7 Score=41.52 Aligned_cols=55 Identities=13% Similarity=-0.023 Sum_probs=42.2
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhh
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFIL 231 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiL 231 (397)
+++++.+.+.. .++..++|-=+|.|..+..|+++ .-.|.|+|.+..++..++..|
T Consensus 8 ll~Evl~~L~~---~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L 64 (305)
T TIGR00006 8 LLDEVVEGLNI---KPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERL 64 (305)
T ss_pred hHHHHHHhcCc---CCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHH
Confidence 45555555532 25678999999999999999876 257999999999998776443
|
Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn. |
| >cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family | Back alignment and domain information |
|---|
Probab=91.13 E-value=1.1 Score=41.22 Aligned_cols=38 Identities=26% Similarity=0.225 Sum_probs=30.7
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMIC 226 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~V~GnD~S~~ML~~ 226 (397)
++.+||+.|+| +|+.+..+|+. |..|.+.+-+......
T Consensus 134 ~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~ 173 (271)
T cd05188 134 PGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLEL 173 (271)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHH
Confidence 57799999998 58888888774 8999999999866543
|
The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro |
| >KOG4058 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.77 E-value=0.24 Score=45.73 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=37.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHHh
Q 015966 189 SPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSF 229 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~f 229 (397)
++.+.+|+|+|-||++..-|+.| +..+|+|+.+-....|++
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl 113 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRL 113 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHH
Confidence 67899999999999999999999 889999999988777764
|
|
| >KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=90.58 E-value=2.6 Score=41.24 Aligned_cols=115 Identities=16% Similarity=0.147 Sum_probs=71.6
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
||...+.+... .++.|||.+|=|.|-.+-.+-++- +.=.-+|--+.-+.--+ ..+
T Consensus 89 piMha~A~ai~----tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr---~~g----------------- 144 (271)
T KOG1709|consen 89 PIMHALAEAIS----TKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMR---DWG----------------- 144 (271)
T ss_pred HHHHHHHHHHh----hCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHH---hcc-----------------
Confidence 57777776554 268899999999998877775553 33344555554432100 000
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
+ .-.+++-.+.|-..++... -.++.||-|.---|-..-+++.++.+.+.++|||+|+|=
T Consensus 145 w--------------------~ek~nViil~g~WeDvl~~-L~d~~FDGI~yDTy~e~yEdl~~~hqh~~rLLkP~gv~S 203 (271)
T KOG1709|consen 145 W--------------------REKENVIILEGRWEDVLNT-LPDKHFDGIYYDTYSELYEDLRHFHQHVVRLLKPEGVFS 203 (271)
T ss_pred c--------------------ccccceEEEecchHhhhcc-ccccCcceeEeechhhHHHHHHHHHHHHhhhcCCCceEE
Confidence 0 0122355555554443321 125779999654454555788899999999999999987
Q ss_pred E
Q 015966 332 N 332 (397)
Q Consensus 332 N 332 (397)
-
T Consensus 204 y 204 (271)
T KOG1709|consen 204 Y 204 (271)
T ss_pred E
Confidence 4
|
|
| >KOG2671 consensus Putative RNA methylase [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=90.44 E-value=0.54 Score=48.51 Aligned_cols=53 Identities=19% Similarity=0.200 Sum_probs=42.8
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHH
Q 015966 171 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMI 225 (397)
Q Consensus 171 y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~ 225 (397)
+.+=++.|....... .++.-|+||=.|||.|-+--|.-|.-|.|-|+.+-|+-
T Consensus 192 mDAeLSli~AN~Amv--~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vr 244 (421)
T KOG2671|consen 192 MDAELSLIMANQAMV--KPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVR 244 (421)
T ss_pred cchhHHHHHhhhhcc--CCCCEEecCccccCceeeehhhhcceeeccccchheee
Confidence 345566666554432 47889999999999999999999999999999998863
|
|
| >TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein | Back alignment and domain information |
|---|
Probab=89.77 E-value=2.1 Score=42.45 Aligned_cols=39 Identities=10% Similarity=-0.071 Sum_probs=29.7
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMICS 227 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~V~GnD~S~~ML~~s 227 (397)
++.+||+.|+| +|.++..+|+. |..|.+.+.+..=+..+
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a 205 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLA 205 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHH
Confidence 57899999965 66677777775 88899999887655433
|
Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized. |
| >PRK07417 arogenate dehydrogenase; Reviewed | Back alignment and domain information |
|---|
Probab=89.58 E-value=1.3 Score=43.19 Aligned_cols=34 Identities=26% Similarity=0.305 Sum_probs=29.7
Q ss_pred eEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHHH
Q 015966 192 ACLVPGAGL--GRLALEISHLGFISQGNEFSYYMMI 225 (397)
Q Consensus 192 rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ML~ 225 (397)
+|.++|+|+ |.++..|++.|++|.+.|.+...+.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~ 37 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCE 37 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 688999997 6789999999999999999987654
|
|
| >TIGR00518 alaDH alanine dehydrogenase | Back alignment and domain information |
|---|
Probab=89.41 E-value=0.7 Score=47.43 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=27.9
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCCeEEEEeCCHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISH-LGFISQGNEFSYYMM 224 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~-~Gf~V~GnD~S~~ML 224 (397)
+..+||++|+| .|+.+...++ +|..|+.+|.+..-+
T Consensus 166 ~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~ 203 (370)
T TIGR00518 166 EPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRL 203 (370)
T ss_pred CCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHH
Confidence 45689999998 6777666655 599999999987543
|
The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP. |
| >PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2 | Back alignment and domain information |
|---|
Probab=88.82 E-value=2.5 Score=40.70 Aligned_cols=37 Identities=16% Similarity=0.142 Sum_probs=31.0
Q ss_pred eEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHH
Q 015966 192 ACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSS 228 (397)
Q Consensus 192 rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~ 228 (397)
+|+++=||.|.+..-|.+.||+ |.++|++.....+.+
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~ 39 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYK 39 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHH
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhh
Confidence 7999999999999999999997 569999998776544
|
1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A .... |
| >PLN03154 putative allyl alcohol dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=88.82 E-value=1.3 Score=44.40 Aligned_cols=37 Identities=22% Similarity=0.252 Sum_probs=31.3
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015966 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (397)
++.+||+.|+ |+|.++..+|+. |..|.+.+-|..-+.
T Consensus 158 ~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~ 197 (348)
T PLN03154 158 KGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVD 197 (348)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHH
Confidence 6789999998 599999999876 999999998876654
|
|
| >KOG1331 consensus Predicted methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.77 E-value=0.73 Score=46.23 Aligned_cols=120 Identities=20% Similarity=0.245 Sum_probs=74.0
Q ss_pred Hhccccc-ChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcc
Q 015966 156 VRDWAAE-GKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHT 234 (397)
Q Consensus 156 ~RDWS~e-G~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~ 234 (397)
+=||-+. ...-|-...+...++|... | .+.-+||.|||-|....-= -..-+.|.|++...+-.|+
T Consensus 17 IYd~ia~~fs~tr~~~Wp~v~qfl~~~-~-----~gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak------ 82 (293)
T KOG1331|consen 17 IYDKIATHFSATRAAPWPMVRQFLDSQ-P-----TGSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAK------ 82 (293)
T ss_pred HHHHhhhhccccccCccHHHHHHHhcc-C-----CcceeeecccCCcccCcCC--Ccceeeecchhhhhccccc------
Confidence 4445432 2444555555666666653 2 3567999999999873211 1224678888876543221
Q ss_pred cccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeec---cCChh
Q 015966 235 ETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF---IDTAH 311 (397)
Q Consensus 235 ~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FF---IDta~ 311 (397)
. .+ .-.++.+|++.+ |.....||++++.-+ +-|..
T Consensus 83 -~-------------------~~-------------------~~~~~~ad~l~~---p~~~~s~d~~lsiavihhlsT~~ 120 (293)
T KOG1331|consen 83 -R-------------------SG-------------------GDNVCRADALKL---PFREESFDAALSIAVIHHLSTRE 120 (293)
T ss_pred -c-------------------CC-------------------CceeehhhhhcC---CCCCCccccchhhhhhhhhhhHH
Confidence 1 10 013456677765 334688999886643 44555
Q ss_pred hHHHHHHHHHHhccCCcEEE
Q 015966 312 NIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 312 Ni~~yi~~I~~~LKPGG~wI 331 (397)
-....++...++|||||.-.
T Consensus 121 RR~~~l~e~~r~lrpgg~~l 140 (293)
T KOG1331|consen 121 RRERALEELLRVLRPGGNAL 140 (293)
T ss_pred HHHHHHHHHHHHhcCCCceE
Confidence 56789999999999999743
|
|
| >cd08230 glucose_DH Glucose dehydrogenase | Back alignment and domain information |
|---|
Probab=88.76 E-value=1.8 Score=42.93 Aligned_cols=31 Identities=39% Similarity=0.405 Sum_probs=25.2
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CCeEEEEeC
Q 015966 189 SPPACLVPGAGL-GRLALEISHL-GFISQGNEF 219 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~-Gf~V~GnD~ 219 (397)
++.+||+.|+|. |.++..+|+. |..|.+++-
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~ 204 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGFEVYVLNR 204 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEec
Confidence 567999999874 7788888775 889999886
|
Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai |
| >PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases | Back alignment and domain information |
|---|
Probab=88.72 E-value=1.2 Score=40.41 Aligned_cols=52 Identities=25% Similarity=0.172 Sum_probs=39.6
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (397)
.+++.|-+.+.+ ++..||||=||.|..+..-.++|-...|+|++.....+|+
T Consensus 179 ~l~~~lI~~~t~----~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~ 230 (231)
T PF01555_consen 179 ELIERLIKASTN----PGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAK 230 (231)
T ss_dssp HHHHHHHHHHS-----TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHH
T ss_pred HHHHHHHHhhhc----cceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhc
Confidence 355666655542 5789999999999999999999999999999998876654
|
In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B .... |
| >TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase | Back alignment and domain information |
|---|
Probab=88.60 E-value=1.2 Score=44.38 Aligned_cols=40 Identities=18% Similarity=0.173 Sum_probs=30.5
Q ss_pred CCCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHHHHH
Q 015966 188 ESPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMMICS 227 (397)
Q Consensus 188 ~~~~rVLvPGCG-lGRLa~eLA~~-Gf~-V~GnD~S~~ML~~s 227 (397)
+++.+||+.|+| +|.++..+|+. |.. |.+++-+..-+..+
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~ 217 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWA 217 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHH
Confidence 367899999875 47777778776 885 99999988776544
|
Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione. |
| >cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases | Back alignment and domain information |
|---|
Probab=88.35 E-value=1.2 Score=43.87 Aligned_cols=41 Identities=17% Similarity=0.065 Sum_probs=30.7
Q ss_pred CCCCeEEEecCC-CChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGAG-LGRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGCG-lGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.|+| +|..+..+|+. |. .|.+++-+..-+..++
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~ 208 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAK 208 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHH
Confidence 367799999877 67777888776 88 4889998877665443
|
This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >cd05278 FDH_like Formaldehyde dehydrogenases | Back alignment and domain information |
|---|
Probab=88.20 E-value=1.8 Score=42.21 Aligned_cols=38 Identities=21% Similarity=0.111 Sum_probs=28.8
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CC-eEEEEeCCHHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GF-ISQGNEFSYYMMIC 226 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf-~V~GnD~S~~ML~~ 226 (397)
++.+||+.|+| +|..+..+|+. |. .|.+++-+......
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~ 207 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDL 207 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 56789998876 58888888776 86 78888887766543
|
Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall |
| >cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family | Back alignment and domain information |
|---|
Probab=87.74 E-value=2.2 Score=41.62 Aligned_cols=37 Identities=19% Similarity=0.202 Sum_probs=30.0
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (397)
++.+||+-|+| +|..+..||+. |+.|.+..-|.....
T Consensus 159 ~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~ 197 (337)
T cd08261 159 AGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLE 197 (337)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHH
Confidence 56789998887 48888888887 999999988877654
|
This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, |
| >cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase | Back alignment and domain information |
|---|
Probab=87.63 E-value=2.1 Score=42.50 Aligned_cols=39 Identities=13% Similarity=-0.156 Sum_probs=28.4
Q ss_pred CCCeEEEecCC-CChhHHHHHHc---CCeEEEEeCCHHHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL---GFISQGNEFSYYMMICS 227 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~---Gf~V~GnD~S~~ML~~s 227 (397)
++.+||+.||| .|.++..+|++ |..|.++|.+..-+..+
T Consensus 163 ~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a 205 (341)
T cd08237 163 DRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLF 205 (341)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHH
Confidence 57799999986 45566777763 46799999987665443
|
NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase ( |
| >cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins | Back alignment and domain information |
|---|
Probab=87.53 E-value=3.4 Score=40.01 Aligned_cols=37 Identities=27% Similarity=0.242 Sum_probs=31.7
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (397)
++.+||+.|+| +|+.+..+|+. |++|.+.+-+..++.
T Consensus 162 ~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~ 200 (330)
T cd08245 162 PGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRE 200 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 56789999997 99998888877 999999999888764
|
Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an |
| >KOG3201 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.47 E-value=1 Score=42.18 Aligned_cols=62 Identities=23% Similarity=0.404 Sum_probs=47.6
Q ss_pred CCCccEEEE--eeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 295 VGAWDAVVT--CFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 295 ~~~fD~VvT--~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
..+||+|++ |.|+|-.+ ...+++|+.+|+|.|.=+-+.| .-.=|++.+...+..+||.+..
T Consensus 101 q~tFDiIlaADClFfdE~h--~sLvdtIk~lL~p~g~Al~fsP---------------RRg~sL~kF~de~~~~gf~v~l 163 (201)
T KOG3201|consen 101 QHTFDIILAADCLFFDEHH--ESLVDTIKSLLRPSGRALLFSP---------------RRGQSLQKFLDEVGTVGFTVCL 163 (201)
T ss_pred hCcccEEEeccchhHHHHH--HHHHHHHHHHhCcccceeEecC---------------cccchHHHHHHHHHhceeEEEe
Confidence 368999996 56777654 5789999999999999654333 1235788888999999999876
Q ss_pred E
Q 015966 373 E 373 (397)
Q Consensus 373 e 373 (397)
+
T Consensus 164 ~ 164 (201)
T KOG3201|consen 164 E 164 (201)
T ss_pred c
Confidence 4
|
|
| >cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity | Back alignment and domain information |
|---|
Probab=87.36 E-value=1.7 Score=41.83 Aligned_cols=37 Identities=22% Similarity=0.236 Sum_probs=30.2
Q ss_pred CCCeEEEec--CCCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015966 189 SPPACLVPG--AGLGRLALEISHL-GFISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPG--CGlGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (397)
++.+||+.| -|+|.++..+|+. |..|.+..-|..-+.
T Consensus 143 ~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~ 182 (329)
T cd08294 143 AGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVA 182 (329)
T ss_pred CCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 678999998 4899999999886 999999888776543
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac |
| >PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related | Back alignment and domain information |
|---|
Probab=87.32 E-value=1.4 Score=40.21 Aligned_cols=34 Identities=18% Similarity=0.138 Sum_probs=25.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHL----GFISQGNEFSYYMM 224 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~----Gf~V~GnD~S~~ML 224 (397)
.+.+|.++|+ |+++..+|++ |.+|.+.|-+..--
T Consensus 35 ~g~tvgIiG~--G~IG~~vA~~l~~fG~~V~~~d~~~~~~ 72 (178)
T PF02826_consen 35 RGKTVGIIGY--GRIGRAVARRLKAFGMRVIGYDRSPKPE 72 (178)
T ss_dssp TTSEEEEEST--SHHHHHHHHHHHHTT-EEEEEESSCHHH
T ss_pred CCCEEEEEEE--cCCcCeEeeeeecCCceeEEecccCChh
Confidence 5789999966 6677666665 89999999988654
|
All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A .... |
| >cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase | Back alignment and domain information |
|---|
Probab=87.28 E-value=1.8 Score=42.43 Aligned_cols=38 Identities=21% Similarity=0.237 Sum_probs=31.1
Q ss_pred CCCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015966 188 ESPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMI 225 (397)
Q Consensus 188 ~~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (397)
+++.+||+-|+ |+|.++..+|+. |..|.+..-|..-..
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~ 190 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVD 190 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 36789999996 799999999876 999999887776543
|
This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=86.85 E-value=0.77 Score=45.15 Aligned_cols=54 Identities=19% Similarity=0.228 Sum_probs=38.0
Q ss_pred ceeEecccccccCCCCCCCCccEEEEe--eccCCh--------------hhHHHHHHHHHHhccCCcEEEE
Q 015966 278 FSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA--------------HNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 278 ls~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta--------------~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
-.++.||.+++.. .-.+++||+|+|- |++... .-+.++++.++++|||||.++-
T Consensus 9 ~~i~~gD~~~~l~-~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i 78 (284)
T PRK11524 9 KTIIHGDALTELK-KIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYI 78 (284)
T ss_pred CEEEeccHHHHHH-hcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEE
Confidence 4578899888532 1235789999994 765210 1134688999999999999874
|
|
| >PLN02494 adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=86.65 E-value=2 Score=46.02 Aligned_cols=35 Identities=14% Similarity=0.049 Sum_probs=24.0
Q ss_pred CCCeEEEecCCC-ChhHHHHH-HcCCeEEEEeCCHHH
Q 015966 189 SPPACLVPGAGL-GRLALEIS-HLGFISQGNEFSYYM 223 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA-~~Gf~V~GnD~S~~M 223 (397)
.+.+|++.|+|. |+.+...+ ..|..|.++|.+..-
T Consensus 253 aGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r 289 (477)
T PLN02494 253 AGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPIC 289 (477)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchh
Confidence 578999999883 33332222 248899999988753
|
|
| >COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only] | Back alignment and domain information |
|---|
Probab=86.48 E-value=3.5 Score=41.47 Aligned_cols=99 Identities=21% Similarity=0.230 Sum_probs=60.6
Q ss_pred CCCeEEEec--CCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPG--AGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPG--CGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+||+.| .|.|.++..||++ |+.+.+.--|..=...+. +... .+
T Consensus 142 ~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~---~lGA---d~------------------------- 190 (326)
T COG0604 142 PGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLK---ELGA---DH------------------------- 190 (326)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHH---hcCC---CE-------------------------
Confidence 578999998 5889999999987 777777766664433111 1110 00
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCC
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL 336 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPL 336 (397)
-+.+...||.+--........||+|+ |+.- -+++....+.|++||.++.+|.+
T Consensus 191 -----------vi~y~~~~~~~~v~~~t~g~gvDvv~-----D~vG--~~~~~~~l~~l~~~G~lv~ig~~ 243 (326)
T COG0604 191 -----------VINYREEDFVEQVRELTGGKGVDVVL-----DTVG--GDTFAASLAALAPGGRLVSIGAL 243 (326)
T ss_pred -----------EEcCCcccHHHHHHHHcCCCCceEEE-----ECCC--HHHHHHHHHHhccCCEEEEEecC
Confidence 02233334443211011234699995 4432 26788889999999999987653
|
|
| >TIGR00936 ahcY adenosylhomocysteinase | Back alignment and domain information |
|---|
Probab=85.93 E-value=3.2 Score=43.54 Aligned_cols=36 Identities=17% Similarity=0.118 Sum_probs=26.8
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-cCCeEEEEeCCHHHH
Q 015966 189 SPPACLVPGAGL-GRLALEISH-LGFISQGNEFSYYMM 224 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~-~Gf~V~GnD~S~~ML 224 (397)
.+.+|++.|+|. |+.+..+++ .|.+|.++|.++.-.
T Consensus 194 ~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~ 231 (406)
T TIGR00936 194 AGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRA 231 (406)
T ss_pred CcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhH
Confidence 577999999986 665444443 488999999888543
|
This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704). |
| >cd08293 PTGR2 Prostaglandin reductase | Back alignment and domain information |
|---|
Probab=85.88 E-value=2.2 Score=41.74 Aligned_cols=35 Identities=31% Similarity=0.204 Sum_probs=29.3
Q ss_pred CeEEEecC--CCChhHHHHHHc-CC-eEEEEeCCHHHHH
Q 015966 191 PACLVPGA--GLGRLALEISHL-GF-ISQGNEFSYYMMI 225 (397)
Q Consensus 191 ~rVLvPGC--GlGRLa~eLA~~-Gf-~V~GnD~S~~ML~ 225 (397)
.+||+-|+ |+|..+..+|+. |. .|.+.+-|..-+.
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~ 194 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQ 194 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHH
Confidence 79999986 799999999886 98 7999988876543
|
Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid |
| >cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like | Back alignment and domain information |
|---|
Probab=85.71 E-value=2.6 Score=41.21 Aligned_cols=34 Identities=24% Similarity=0.379 Sum_probs=25.3
Q ss_pred CCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecC
Q 015966 296 GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP 335 (397)
Q Consensus 296 ~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GP 335 (397)
..+|+|+.+. . ....++.+.+.|+++|.||++|.
T Consensus 234 ~~~d~vld~~--g----~~~~~~~~~~~l~~~g~~v~~g~ 267 (345)
T cd08286 234 RGVDVVIEAV--G----IPATFELCQELVAPGGHIANVGV 267 (345)
T ss_pred CCCCEEEECC--C----CHHHHHHHHHhccCCcEEEEecc
Confidence 4589987653 1 12357888899999999999874
|
This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers ( |
| >PTZ00357 methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=85.57 E-value=4.9 Score=45.19 Aligned_cols=105 Identities=20% Similarity=0.201 Sum_probs=58.5
Q ss_pred CeEEEecCCCChhHHHHHHc----C--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCcccccc
Q 015966 191 PACLVPGAGLGRLALEISHL----G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (397)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~----G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~i 264 (397)
..|+|+|+|.|-|+-..-+. | ++|.++|-.....+ +++.+-.....|. + .. +
T Consensus 702 vVImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~---~tllr~~N~eeW~---------n---~~-----~-- 759 (1072)
T PTZ00357 702 LHLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAA---FTRMRWANDPEWT---------Q---LA-----Y-- 759 (1072)
T ss_pred EEEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHH---HHHHHHhcccccc---------c---cc-----c--
Confidence 57999999999996554222 3 57889998843221 1111100111121 0 00 0
Q ss_pred CCCCCCCCCCCCcceeEecccccccCC--------CCCCCCccEEEEee---ccCChhhHHHHHHHHHHhccC
Q 015966 265 PDIHPASAGITEGFSMCGGDFVEVYSD--------PSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKD 326 (397)
Q Consensus 265 PDv~p~~~~~~~~ls~~~GDF~ely~~--------~~~~~~fD~VvT~F---FIDta~Ni~~yi~~I~~~LKP 326 (397)
..+..+.++..||+++-.. |...+++|+||+-. |=|..- =.+.|.-+.+.||+
T Consensus 760 --------~~G~~VtII~sDMR~W~~pe~~~s~~~P~~~gKaDIVVSELLGSFGDNEL-SPECLDGaQrfLKd 823 (1072)
T PTZ00357 760 --------TFGHTLEVIVADGRTIATAAENGSLTLPADFGLCDLIVSELLGSLGDNEL-SPECLEAFHAQLED 823 (1072)
T ss_pred --------cCCCeEEEEeCcccccccccccccccccccccccceehHhhhcccccccC-CHHHHHHHHHhhhh
Confidence 0123478899999997431 11224799999864 433221 12677777777775
|
|
| >COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=85.57 E-value=6.3 Score=39.67 Aligned_cols=40 Identities=23% Similarity=0.192 Sum_probs=32.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeE-EEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFIS-QGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V-~GnD~S~~ML~~s~ 228 (397)
...+|+++=||.|.+..-+...||++ .++|+..+.+.+.+
T Consensus 2 ~~~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~ 42 (328)
T COG0270 2 EKMKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYK 42 (328)
T ss_pred CCceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHH
Confidence 35689999888888888888889985 59999998876544
|
|
| >PRK12480 D-lactate dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=85.53 E-value=3.7 Score=41.55 Aligned_cols=33 Identities=15% Similarity=0.083 Sum_probs=26.1
Q ss_pred CCCeEEEecCCC-Ch-hHHHHHHcCCeEEEEeCCH
Q 015966 189 SPPACLVPGAGL-GR-LALEISHLGFISQGNEFSY 221 (397)
Q Consensus 189 ~~~rVLvPGCGl-GR-La~eLA~~Gf~V~GnD~S~ 221 (397)
.+.+|.++|+|. |+ +|..|+..|++|.+.|.+.
T Consensus 145 ~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~ 179 (330)
T PRK12480 145 KNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYP 179 (330)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCh
Confidence 466899999887 43 5666777799999999876
|
|
| >PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=85.53 E-value=0.61 Score=39.16 Aligned_cols=89 Identities=19% Similarity=0.228 Sum_probs=54.6
Q ss_pred CCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCc
Q 015966 199 GLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEG 277 (397)
Q Consensus 199 GlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ 277 (397)
|+|.++..+|+. |..|.+.|-+..=+..++-+ . +. . ++.. +.
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~---G--a~-~----~~~~-----~~---------------------- 43 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKEL---G--AD-H----VIDY-----SD---------------------- 43 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT---T--ES-E----EEET-----TT----------------------
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhh---c--cc-c----cccc-----cc----------------------
Confidence 678999999886 99999999999776544311 1 00 0 0000 00
Q ss_pred ceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecC
Q 015966 278 FSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP 335 (397)
Q Consensus 278 ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GP 335 (397)
.. ....+.++.. ...+|+|+.| .. ....++...++|+|||.++.+|-
T Consensus 44 ~~-~~~~i~~~~~----~~~~d~vid~-----~g-~~~~~~~~~~~l~~~G~~v~vg~ 90 (130)
T PF00107_consen 44 DD-FVEQIRELTG----GRGVDVVIDC-----VG-SGDTLQEAIKLLRPGGRIVVVGV 90 (130)
T ss_dssp SS-HHHHHHHHTT----TSSEEEEEES-----SS-SHHHHHHHHHHEEEEEEEEEESS
T ss_pred cc-cccccccccc----cccceEEEEe-----cC-cHHHHHHHHHHhccCCEEEEEEc
Confidence 00 0112223322 2579999654 22 24789999999999999998763
|
1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: |
| >PTZ00075 Adenosylhomocysteinase; Provisional | Back alignment and domain information |
|---|
Probab=85.49 E-value=3.8 Score=43.92 Aligned_cols=35 Identities=17% Similarity=0.142 Sum_probs=24.0
Q ss_pred CCCeEEEecCCC-ChhHHH-HHHcCCeEEEEeCCHHH
Q 015966 189 SPPACLVPGAGL-GRLALE-ISHLGFISQGNEFSYYM 223 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~e-LA~~Gf~V~GnD~S~~M 223 (397)
.+.+|++.|+|. ||.+.. +...|..|...|.+..-
T Consensus 253 aGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~ 289 (476)
T PTZ00075 253 AGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPIC 289 (476)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchh
Confidence 678999999885 444222 23348899999887643
|
|
| >cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members | Back alignment and domain information |
|---|
Probab=85.41 E-value=5.5 Score=37.52 Aligned_cols=39 Identities=23% Similarity=0.154 Sum_probs=30.7
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHc-CCe-EEEEeCCHHHHHH
Q 015966 188 ESPPACLVPGAGL-GRLALEISHL-GFI-SQGNEFSYYMMIC 226 (397)
Q Consensus 188 ~~~~rVLvPGCGl-GRLa~eLA~~-Gf~-V~GnD~S~~ML~~ 226 (397)
+++.+||+.|+|. |..+..+|+. |.. |.+.+-+...+..
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~ 137 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARREL 137 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHH
Confidence 3678899998875 7788888775 888 9999988877643
|
This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD |
| >PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A | Back alignment and domain information |
|---|
Probab=85.38 E-value=2.4 Score=41.76 Aligned_cols=82 Identities=22% Similarity=0.269 Sum_probs=51.5
Q ss_pred chhhHHHHHHHHHHhcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCC
Q 015966 143 ADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFS 220 (397)
Q Consensus 143 ~d~dkv~stL~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S 220 (397)
.|-..++..++++.+--. .-.||-..+..+.+++.+..+ ...+|||+|||+==|++.+... +....|.|+.
T Consensus 66 ~D~e~~~~~~r~lL~~Ha--ST~ERl~~Ld~fY~~if~~~~-----~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID 138 (251)
T PF07091_consen 66 GDPEAIRAWCRRLLAGHA--STRERLPNLDEFYDEIFGRIP-----PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDID 138 (251)
T ss_dssp THHHHHHHHHHHHHHTSH--HHHCCGGGHHHHHHHHCCCS--------SEEEEET-TTCHHHHHTTTSSTT-EEEEEESB
T ss_pred CCHHHHHHHHHHHHhhcc--chhhhhhhHHHHHHHHHhcCC-----CCchhhhhhccCCceehhhcccCCCcEEEEEeCC
Confidence 344444444444444322 245676556666666655443 4679999999999998877666 5788999999
Q ss_pred HHHHHHHHhhh
Q 015966 221 YYMMICSSFIL 231 (397)
Q Consensus 221 ~~ML~~s~fiL 231 (397)
..|..+-+-++
T Consensus 139 ~~~ve~l~~~l 149 (251)
T PF07091_consen 139 SQLVEFLNAFL 149 (251)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99987655444
|
|
| >TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase | Back alignment and domain information |
|---|
Probab=85.29 E-value=3 Score=40.82 Aligned_cols=37 Identities=24% Similarity=0.136 Sum_probs=26.8
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~-V~GnD~S~~ML~ 225 (397)
++.+||+.||| .|.++..+|+. |.. |.+.|.....+.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~ 183 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRD 183 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHH
Confidence 45689999875 67788888875 887 556777766553
|
|
| >PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=85.29 E-value=4.7 Score=36.11 Aligned_cols=59 Identities=14% Similarity=0.173 Sum_probs=38.2
Q ss_pred ccEEEEeeccCChhhHHHHHHH--HHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 298 WDAVVTCFFIDTAHNIVEYIEI--ISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 298 fD~VvT~FFIDta~Ni~~yi~~--I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
-|+|++|.. ....+.+.+.. +...|++|-+||+.+.... -+..++.+.+.+.|...+.-
T Consensus 58 ~dvvi~~v~--~~~~v~~v~~~~~i~~~l~~g~iiid~sT~~p---------------~~~~~~~~~~~~~g~~~vda 118 (163)
T PF03446_consen 58 ADVVILCVP--DDDAVEAVLFGENILAGLRPGKIIIDMSTISP---------------ETSRELAERLAAKGVRYVDA 118 (163)
T ss_dssp BSEEEE-SS--SHHHHHHHHHCTTHGGGS-TTEEEEE-SS--H---------------HHHHHHHHHHHHTTEEEEEE
T ss_pred ccceEeecc--cchhhhhhhhhhHHhhccccceEEEecCCcch---------------hhhhhhhhhhhhccceeeee
Confidence 488888644 33457778888 9999999999998544311 12456666777788877763
|
1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A .... |
| >cd08234 threonine_DH_like L-threonine dehydrogenase | Back alignment and domain information |
|---|
Probab=84.87 E-value=2.9 Score=40.44 Aligned_cols=37 Identities=27% Similarity=0.237 Sum_probs=28.6
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~-V~GnD~S~~ML~ 225 (397)
++.+||+.|+| +|..+..+|+. |+. |.+.+-|.....
T Consensus 159 ~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~ 198 (334)
T cd08234 159 PGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLE 198 (334)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH
Confidence 56799998876 57787777776 777 888888887754
|
L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. |
| >COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=84.41 E-value=3.4 Score=43.09 Aligned_cols=22 Identities=27% Similarity=0.329 Sum_probs=19.5
Q ss_pred hHHHHHHHHHHhccCCcEEEEe
Q 015966 312 NIVEYIEIISRILKDGGVWINL 333 (397)
Q Consensus 312 Ni~~yi~~I~~~LKPGG~wIN~ 333 (397)
-|..||+..+++|.|||.+|-+
T Consensus 203 ~i~~~ie~lw~l~~~gg~lViv 224 (484)
T COG5459 203 PIQVNIERLWNLLAPGGHLVIV 224 (484)
T ss_pred hHHHHHHHHHHhccCCCeEEEE
Confidence 3778999999999999999954
|
|
| >PRK11559 garR tartronate semialdehyde reductase; Provisional | Back alignment and domain information |
|---|
Probab=84.36 E-value=9.5 Score=37.16 Aligned_cols=34 Identities=9% Similarity=0.032 Sum_probs=28.4
Q ss_pred CeEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHH
Q 015966 191 PACLVPGAGL--GRLALEISHLGFISQGNEFSYYMM 224 (397)
Q Consensus 191 ~rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ML 224 (397)
.+|-++|+|. +.++..|++.|+.|.+.|.+..-+
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~~~~ 38 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNPEAV 38 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEEEEcCCHHHH
Confidence 3689999997 457899999999999999887554
|
|
| >TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase | Back alignment and domain information |
|---|
Probab=84.03 E-value=3.6 Score=40.08 Aligned_cols=38 Identities=21% Similarity=0.215 Sum_probs=30.9
Q ss_pred CCCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015966 188 ESPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMI 225 (397)
Q Consensus 188 ~~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (397)
+++.+||+.|+ |.|.++..+|+. |..|.+.+-|..-+.
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~ 177 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVA 177 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHH
Confidence 36789999984 699999999886 999999888876544
|
Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase. |
| >cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase) | Back alignment and domain information |
|---|
Probab=83.54 E-value=4.6 Score=40.46 Aligned_cols=40 Identities=18% Similarity=0.098 Sum_probs=30.4
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (397)
++.+||+.|+| +|.++..+|+. |. .|.++|.+..-+..++
T Consensus 191 ~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~ 233 (371)
T cd08281 191 PGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALAR 233 (371)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHH
Confidence 56799999875 46677777775 98 6999999987765443
|
NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd |
| >COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=83.43 E-value=3.6 Score=39.86 Aligned_cols=166 Identities=22% Similarity=0.236 Sum_probs=89.2
Q ss_pred HHhcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHHhhhh
Q 015966 155 IVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSSFILN 232 (397)
Q Consensus 155 ~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G-f~V~GnD~S~~ML~~s~fiLn 232 (397)
-+|.|-+. |. .+-..+..-+.....+++.+||=+|+-+|..+--++.- | =.+.|+|||+-+. +-+|+
T Consensus 50 eYR~Wnp~----RS----KLaAaIl~Gl~~~pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~---reLl~ 118 (231)
T COG1889 50 EYREWNPR----RS----KLAAAILKGLKNFPIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPM---RELLD 118 (231)
T ss_pred ceeeeCcc----hh----HHHHHHHcCcccCCcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhH---HHHHH
Confidence 47888754 33 23344433333223457889999999999887666554 3 2489999999886 33444
Q ss_pred cccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccc--cCCCCCCCCccEEEEeeccCCh
Q 015966 233 HTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEV--YSDPSQVGAWDAVVTCFFIDTA 310 (397)
Q Consensus 233 ~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~el--y~~~~~~~~fD~VvT~FFIDta 310 (397)
-+.+. -.|+| +.+|.+.. |. .--+..|+| |.|.|
T Consensus 119 ~a~~R--~Ni~P------------------------------------IL~DA~~P~~Y~--~~Ve~VDvi----y~DVA 154 (231)
T COG1889 119 VAEKR--PNIIP------------------------------------ILEDARKPEKYR--HLVEKVDVI----YQDVA 154 (231)
T ss_pred HHHhC--CCcee------------------------------------eecccCCcHHhh--hhcccccEE----EEecC
Confidence 44321 12333 22443321 21 012345555 44544
Q ss_pred h--hHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeecCCCCCCC
Q 015966 311 H--NIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTN 383 (397)
Q Consensus 311 ~--Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~~~Y~~d 383 (397)
+ ...=.+......||+||..+-. +.=---|. +.+ +-+.=.+|+..+. ..||++.+.- ...+|-.|
T Consensus 155 Qp~Qa~I~~~Na~~FLk~~G~~~i~--iKArSIdv--T~d--p~~vf~~ev~kL~-~~~f~i~e~~-~LePye~D 221 (231)
T COG1889 155 QPNQAEILADNAEFFLKKGGYVVIA--IKARSIDV--TAD--PEEVFKDEVEKLE-EGGFEILEVV-DLEPYEKD 221 (231)
T ss_pred CchHHHHHHHHHHHhcccCCeEEEE--EEeecccc--cCC--HHHHHHHHHHHHH-hcCceeeEEe-ccCCcccc
Confidence 2 2334567778889999865521 11001111 111 2234456676655 5689998754 33455544
|
|
| >TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating) | Back alignment and domain information |
|---|
Probab=82.96 E-value=17 Score=35.83 Aligned_cols=34 Identities=12% Similarity=0.110 Sum_probs=27.9
Q ss_pred eEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHHH
Q 015966 192 ACLVPGAGL--GRLALEISHLGFISQGNEFSYYMMI 225 (397)
Q Consensus 192 rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ML~ 225 (397)
+|-++|+|. +.++..|++.|++|.+.|.+..-+.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~~V~~~dr~~~~~~ 37 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGHDCVGYDHDQDAVK 37 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 588889886 4578888999999999999987643
|
This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle. |
| >TIGR00692 tdh L-threonine 3-dehydrogenase | Back alignment and domain information |
|---|
Probab=82.74 E-value=5.5 Score=39.07 Aligned_cols=37 Identities=27% Similarity=0.403 Sum_probs=26.8
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~-V~GnD~S~~ML~ 225 (397)
++.+||+-|+| +|..+..+|+. |.. |.+.+-|..-..
T Consensus 161 ~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~ 200 (340)
T TIGR00692 161 SGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLE 200 (340)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH
Confidence 56788887665 67777777774 886 888877775554
|
E. coli His-90 modulates substrate specificity and is believed part of the active site. |
| >KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=82.73 E-value=4 Score=41.52 Aligned_cols=113 Identities=19% Similarity=0.207 Sum_probs=70.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe---EEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFI---SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~---V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
+..+|||+|-|-|....+.+++ -. +.-+|+...-+..+..- +|
T Consensus 121 npkkvlVVgggDggvlrevikH-~~ve~i~~~eiD~~Vie~sk~y---------------------------------~p 166 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKH-KSVENILLCEIDENVIESSKQY---------------------------------LP 166 (337)
T ss_pred CCCeEEEEecCCccceeeeecc-ccccceeeehhhHHHHHHHHHH---------------------------------hH
Confidence 6789999999999999999998 33 33445544332222210 11
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee--ccCChhhH--HHHHHHHHHhccCCcEEEEecCCcc
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF--FIDTAHNI--VEYIEIISRILKDGGVWINLGPLLY 338 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F--FIDta~Ni--~~yi~~I~~~LKPGG~wIN~GPLlY 338 (397)
.+.-+ --..++.+.-||=..++.. ...+.||+|+|=- -+-.|.++ ..|++.+.+.||+||+.+..|--+|
T Consensus 167 ~la~g--y~~~~v~l~iGDG~~fl~~-~~~~~~dVii~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ec~w 240 (337)
T KOG1562|consen 167 TLACG--YEGKKVKLLIGDGFLFLED-LKENPFDVIITDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQGECMW 240 (337)
T ss_pred HHhcc--cCCCceEEEeccHHHHHHH-hccCCceEEEEecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEecceeh
Confidence 11100 0123467777886665532 1258999998743 12234443 3699999999999999998765544
|
|
| >cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases | Back alignment and domain information |
|---|
Probab=82.71 E-value=5.1 Score=39.07 Aligned_cols=37 Identities=22% Similarity=0.225 Sum_probs=28.6
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CCe-EEEEeCCHHHHH
Q 015966 189 SPPACLVPGAGL-GRLALEISHL-GFI-SQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~-Gf~-V~GnD~S~~ML~ 225 (397)
++.+||+.|+|. |..+..+|+. |.. |.+..-|..+..
T Consensus 159 ~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~ 198 (343)
T cd08236 159 LGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLA 198 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHH
Confidence 567899988765 7888788775 887 989888876654
|
This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast |
| >TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit | Back alignment and domain information |
|---|
Probab=82.39 E-value=4.2 Score=43.90 Aligned_cols=117 Identities=20% Similarity=0.210 Sum_probs=65.1
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-cCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGL-GRLALEISH-LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~-~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+||++|+|. |..+..+|+ +|..|.+.|.+..-+..++- + . ..+ +.++.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~-l--G---a~~---------------------v~v~~ 215 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS-M--G---AEF---------------------LELDF 215 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH-c--C---CeE---------------------Eeccc
Confidence 568999999986 466666655 49999999999986654441 1 0 000 01000
Q ss_pred CCCCCCCCCCcceeEecccccc--cCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe
Q 015966 267 IHPASAGITEGFSMCGGDFVEV--YSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 333 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~el--y~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~ 333 (397)
-.......+. -...-.+|.+. +..+.+-..+|+|+|+-.|+..+...-..+.+-+.+|||++.|++
T Consensus 216 ~e~g~~~~gY-a~~~s~~~~~~~~~~~~e~~~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDl 283 (511)
T TIGR00561 216 KEEGGSGDGY-AKVMSEEFIAAEMELFAAQAKEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDL 283 (511)
T ss_pred cccccccccc-eeecCHHHHHHHHHHHHHHhCCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEe
Confidence 0000000000 01111232210 000122356999999988877554334577788999999999964
|
In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff. |
| >PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional | Back alignment and domain information |
|---|
Probab=82.17 E-value=6.6 Score=41.46 Aligned_cols=36 Identities=19% Similarity=0.153 Sum_probs=25.3
Q ss_pred CCCeEEEecCCC-ChhHH-HHHHcCCeEEEEeCCHHHH
Q 015966 189 SPPACLVPGAGL-GRLAL-EISHLGFISQGNEFSYYMM 224 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~-eLA~~Gf~V~GnD~S~~ML 224 (397)
.+.+|++.|+|. |+.+. .+...|.+|...|.+..-.
T Consensus 211 ~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra 248 (425)
T PRK05476 211 AGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICA 248 (425)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhh
Confidence 577999999873 33322 2334589999999988654
|
|
| >PRK13699 putative methylase; Provisional | Back alignment and domain information |
|---|
Probab=82.15 E-value=4.6 Score=38.75 Aligned_cols=51 Identities=22% Similarity=0.128 Sum_probs=41.4
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (397)
+++.|.+.+. .++..||||=||.|..+..-.+.|-...|+|++.....++.
T Consensus 152 l~~~~i~~~s----~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~ 202 (227)
T PRK13699 152 SLQPLIESFT----HPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQ 202 (227)
T ss_pred HHHHHHHHhC----CCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHH
Confidence 4455544443 25779999999999999999999999999999998877665
|
|
| >PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional | Back alignment and domain information |
|---|
Probab=82.04 E-value=9.5 Score=39.73 Aligned_cols=35 Identities=14% Similarity=-0.027 Sum_probs=29.0
Q ss_pred CeEEEecCCCCh--hHHHHHHcCCeEEEEeCCHHHHH
Q 015966 191 PACLVPGAGLGR--LALEISHLGFISQGNEFSYYMMI 225 (397)
Q Consensus 191 ~rVLvPGCGlGR--La~eLA~~Gf~V~GnD~S~~ML~ 225 (397)
.+|-++|.|.-. +|..|+++|++|.|.|.+..-+.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~ 40 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVD 40 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 579999999644 47778999999999999987664
|
|
| >KOG1501 consensus Arginine N-methyltransferase [General function prediction only] | Back alignment and domain information |
|---|
Probab=82.02 E-value=2.4 Score=45.19 Aligned_cols=45 Identities=20% Similarity=0.130 Sum_probs=39.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhc
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNH 233 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~ 233 (397)
.+.-||++|.|||-|..--++.|. .|+++|.=-.|.-+|+.|..+
T Consensus 66 gkv~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~k 111 (636)
T KOG1501|consen 66 GKVFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHK 111 (636)
T ss_pred ceEEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhc
Confidence 567889999999999999999986 499999999999999988743
|
|
| >PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised | Back alignment and domain information |
|---|
Probab=81.98 E-value=33 Score=33.82 Aligned_cols=126 Identities=20% Similarity=0.179 Sum_probs=68.4
Q ss_pred CCCeEEEecCC-CChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAG-LGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
.+.+||++|=+ +-.||..|....-+|+.+|+..-+|.. |-..+.+ . ++
T Consensus 44 ~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~f---I~~~a~~-~----------------------gl----- 92 (243)
T PF01861_consen 44 EGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDF---INRVAEE-E----------------------GL----- 92 (243)
T ss_dssp TT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHH---HHHHHHH-H----------------------T------
T ss_pred cCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHH---HHHHHHH-c----------------------CC-----
Confidence 57799999954 345566666677899999999999853 3222211 0 11
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC---ChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhcc
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID---TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLY 344 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID---ta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~ 344 (397)
.+.....|+++-.. +...++||+++| | |.+-+.-++..-...||.-|-.+- +.|..
T Consensus 93 ---------~i~~~~~DlR~~LP-~~~~~~fD~f~T----DPPyT~~G~~LFlsRgi~~Lk~~g~~gy-----~~~~~-- 151 (243)
T PF01861_consen 93 ---------PIEAVHYDLRDPLP-EELRGKFDVFFT----DPPYTPEGLKLFLSRGIEALKGEGCAGY-----FGFTH-- 151 (243)
T ss_dssp ----------EEEE---TTS----TTTSS-BSEEEE-------SSHHHHHHHHHHHHHTB-STT-EEE-----EEE-T--
T ss_pred ---------ceEEEEecccccCC-HHHhcCCCEEEe----CCCCCHHHHHHHHHHHHHHhCCCCceEE-----EEEec--
Confidence 15566778877433 345689998876 5 556677889888999997663331 22221
Q ss_pred CCCCCccccCC---HHHHHHHHHhCCCEEEEE
Q 015966 345 GQEDEMSIELS---LEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 345 g~~~~~~ieLS---~EEl~~ll~~~GFeii~e 373 (397)
.+-| +-++.+.+..+||.|..-
T Consensus 152 -------~~~s~~~~~~~Q~~l~~~gl~i~di 176 (243)
T PF01861_consen 152 -------KEASPDKWLEVQRFLLEMGLVITDI 176 (243)
T ss_dssp -------TT--HHHHHHHHHHHHTS--EEEEE
T ss_pred -------CcCcHHHHHHHHHHHHHCCcCHHHH
Confidence 1123 347888888999998874
|
All the members are 350-400 amino acids long.; PDB: 2QM3_A. |
| >cd05285 sorbitol_DH Sorbitol dehydrogenase | Back alignment and domain information |
|---|
Probab=81.96 E-value=8.4 Score=37.80 Aligned_cols=38 Identities=21% Similarity=0.207 Sum_probs=29.4
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHc-CCe-EEEEeCCHHHHH
Q 015966 188 ESPPACLVPGAGL-GRLALEISHL-GFI-SQGNEFSYYMMI 225 (397)
Q Consensus 188 ~~~~rVLvPGCGl-GRLa~eLA~~-Gf~-V~GnD~S~~ML~ 225 (397)
.++.+||+-|+|. |.++..+|+. |.. |.+..-+.....
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~ 201 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLE 201 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHH
Confidence 3677999987765 8888888886 887 888888876654
|
Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. |
| >KOG2872 consensus Uroporphyrinogen decarboxylase [Coenzyme transport and metabolism] | Back alignment and domain information |
|---|
Probab=81.89 E-value=4.3 Score=41.13 Aligned_cols=76 Identities=18% Similarity=0.282 Sum_probs=54.7
Q ss_pred HHHHHhcccccChhHH--hhch---HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHH
Q 015966 152 IRNIVRDWAAEGKTER--DQCY---KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMIC 226 (397)
Q Consensus 152 L~q~~RDWS~eG~~ER--~~~y---~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~ 226 (397)
+.|+-..|..|=..|- +-++ ..|.+++++++++.. ....-+.+-.-|.|.+--+|++.||+|.|.|++..|..+
T Consensus 209 ~lQiFeSwageLspe~f~e~s~PYl~~I~~~Vk~rl~~~~-~~~vPmi~fakG~g~~Le~l~~tG~DVvgLDWTvdp~ea 287 (359)
T KOG2872|consen 209 ALQIFESWAGELSPEDFEEFSLPYLRQIAEAVKKRLPELG-LAPVPMILFAKGSGGALEELAQTGYDVVGLDWTVDPAEA 287 (359)
T ss_pred HHHHHHHhcccCCHHHHHHhhhHHHHHHHHHHHHhhhhhc-CCCCceEEEEcCcchHHHHHHhcCCcEEeecccccHHHH
Confidence 3456667876544443 1122 346677777777652 345567888999999999999999999999999999875
Q ss_pred HH
Q 015966 227 SS 228 (397)
Q Consensus 227 s~ 228 (397)
-+
T Consensus 288 r~ 289 (359)
T KOG2872|consen 288 RR 289 (359)
T ss_pred HH
Confidence 43
|
|
| >TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase | Back alignment and domain information |
|---|
Probab=81.38 E-value=3.7 Score=39.47 Aligned_cols=40 Identities=25% Similarity=0.107 Sum_probs=29.5
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~-V~GnD~S~~ML~~s~ 228 (397)
++.+||+.|+| +|.++..+|+. |.. |.++|.+..-+..++
T Consensus 120 ~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~ 162 (280)
T TIGR03366 120 KGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELAL 162 (280)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 56789999874 57777777765 887 889998887665443
|
This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds. |
| >PRK11524 putative methyltransferase; Provisional | Back alignment and domain information |
|---|
Probab=80.87 E-value=8.4 Score=37.87 Aligned_cols=54 Identities=17% Similarity=-0.025 Sum_probs=44.5
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhh
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFIL 231 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiL 231 (397)
+++.|-+.+. .++..||||=||.|..+..-.++|-...|+|++.+-..+|.--+
T Consensus 197 L~erlI~~~S----~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl 250 (284)
T PRK11524 197 LLKRIILASS----NPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRL 250 (284)
T ss_pred HHHHHHHHhC----CCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHH
Confidence 5666665554 36789999999999999999999999999999998887776444
|
|
| >cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like | Back alignment and domain information |
|---|
Probab=80.42 E-value=6.5 Score=38.43 Aligned_cols=38 Identities=29% Similarity=0.225 Sum_probs=28.1
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMMIC 226 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~-V~GnD~S~~ML~~ 226 (397)
++.+||+.|+| +|.++..+|+. |.. |.+++-+..-+..
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~ 203 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLEL 203 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHH
Confidence 57799999874 46666667664 888 9999988766543
|
MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at |
| >cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase | Back alignment and domain information |
|---|
Probab=80.35 E-value=5.1 Score=39.44 Aligned_cols=39 Identities=23% Similarity=0.060 Sum_probs=28.7
Q ss_pred CCCeEEEecC-CCChhHHHHHHc-CC-eEEEEeCCHHHHHHH
Q 015966 189 SPPACLVPGA-GLGRLALEISHL-GF-ISQGNEFSYYMMICS 227 (397)
Q Consensus 189 ~~~rVLvPGC-GlGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s 227 (397)
++.+||+.|+ ++|.++..+|+. |+ .|.+.+-+...+..+
T Consensus 172 ~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~ 213 (351)
T cd08233 172 PGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELA 213 (351)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHH
Confidence 5678998876 457777777666 88 788998888776543
|
(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. |
| >KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=80.31 E-value=1.7 Score=46.89 Aligned_cols=39 Identities=18% Similarity=0.040 Sum_probs=35.3
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015966 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (397)
+..+||.-||||-++.-+|+.--.|.|+|+|+..+.-|+
T Consensus 384 ~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~ 422 (534)
T KOG2187|consen 384 DKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAE 422 (534)
T ss_pred CcEEEEEeecCCceehhhhccccceeeeecChhhcchhh
Confidence 457999999999999999998889999999999987665
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 397 | |||
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 3e-05 |
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* Length = 265 | Back alignment and structure |
|---|
Score = 44.3 bits (104), Expect = 3e-05
Identities = 18/96 (18%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
Query: 291 DPSQVGAWDAVVTCFFIDTA-HNIVEY---IEIISRILKDGGVWINLGPLLYHFADLYGQ 346
+ D +++ +D A ++ Y + + +LK GG + + L + + G+
Sbjct: 151 GGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYY-MIGE 209
Query: 347 EDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTT 382
+ S+ L E V+ G+ E+ + I Y++
Sbjct: 210 QKFSSLPLGWETVRDAVEEAGYTIEQFEVISQNYSS 245
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 397 | |||
| 1pjz_A | 203 | Thiopurine S-methyltransferase; polymorphism, S-ad | 99.75 | |
| 3l8d_A | 242 | Methyltransferase; structural genomics, PSI, nysgr | 99.73 | |
| 3lcc_A | 235 | Putative methyl chloride transferase; halide methy | 99.73 | |
| 2gb4_A | 252 | Thiopurine S-methyltransferase; 18204406, thiopuri | 99.72 | |
| 3e23_A | 211 | Uncharacterized protein RPA2492; alpha-beta protei | 99.71 | |
| 3h2b_A | 203 | SAM-dependent methyltransferase; alpha-beta protei | 99.71 | |
| 1ri5_A | 298 | MRNA capping enzyme; methyltransferase, M7G, messe | 99.7 | |
| 3e8s_A | 227 | Putative SAM dependent methyltransferase; NP_74470 | 99.7 | |
| 2p7i_A | 250 | Hypothetical protein; putative methyltransferase, | 99.7 | |
| 4htf_A | 285 | S-adenosylmethionine-dependent methyltransferase; | 99.7 | |
| 2kw5_A | 202 | SLR1183 protein; structural genomics, northeast st | 99.68 | |
| 3ou2_A | 218 | SAM-dependent methyltransferase; O-methyltransfera | 99.68 | |
| 3g5l_A | 253 | Putative S-adenosylmethionine dependent methyltran | 99.68 | |
| 4gek_A | 261 | TRNA (CMO5U34)-methyltransferase; structural genom | 99.68 | |
| 3dli_A | 240 | Methyltransferase; PSI-II, NYSGXRC, structural gen | 99.68 | |
| 2i62_A | 265 | Nicotinamide N-methyltransferase; structural genom | 99.67 | |
| 2a14_A | 263 | Indolethylamine N-methyltransferase; SGC,INMT, str | 99.66 | |
| 3dh0_A | 219 | SAM dependent methyltransferase; cystal structure, | 99.66 | |
| 3pfg_A | 263 | N-methyltransferase; N,N-dimethyltransferase, SAM | 99.66 | |
| 3hnr_A | 220 | Probable methyltransferase BT9727_4108; structural | 99.66 | |
| 1y8c_A | 246 | S-adenosylmethionine-dependent methyltransferase; | 99.64 | |
| 1nkv_A | 256 | Hypothetical protein YJHP; structural genomics, PS | 99.64 | |
| 3ujc_A | 266 | Phosphoethanolamine N-methyltransferase; parasite; | 99.63 | |
| 3sm3_A | 235 | SAM-dependent methyltransferases; NESG, structural | 99.63 | |
| 3hem_A | 302 | Cyclopropane-fatty-acyl-phospholipid synthase 2; p | 99.63 | |
| 3dtn_A | 234 | Putative methyltransferase MM_2633; structural gen | 99.63 | |
| 2p35_A | 259 | Trans-aconitate 2-methyltransferase; SAM dependent | 99.63 | |
| 3d2l_A | 243 | SAM-dependent methyltransferase; ZP_00538691.1, st | 99.63 | |
| 3dlc_A | 219 | Putative S-adenosyl-L-methionine-dependent methylt | 99.63 | |
| 3cc8_A | 230 | Putative methyltransferase; structural genomics, j | 99.63 | |
| 3bus_A | 273 | REBM, methyltransferase; rebeccamycin synthesis; H | 99.63 | |
| 1vl5_A | 260 | Unknown conserved protein BH2331; putative methylt | 99.63 | |
| 3jwh_A | 217 | HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena | 99.63 | |
| 3ccf_A | 279 | Cyclopropane-fatty-acyl-phospholipid synthase; YP_ | 99.62 | |
| 3g2m_A | 299 | PCZA361.24; SAM-dependent methyltransferase, glyco | 99.62 | |
| 3bkw_A | 243 | MLL3908 protein, S-adenosylmethionine dependent me | 99.62 | |
| 1kpg_A | 287 | CFA synthase;, cyclopropane-fatty-acyl-phospholipi | 99.61 | |
| 2ex4_A | 241 | Adrenal gland protein AD-003; methyltransferase, s | 99.61 | |
| 2xvm_A | 199 | Tellurite resistance protein TEHB; antibiotic resi | 99.61 | |
| 1xtp_A | 254 | LMAJ004091AAA; SGPP, structural genomics, PSI, pro | 99.61 | |
| 1wzn_A | 252 | SAM-dependent methyltransferase; structural genomi | 99.61 | |
| 2o57_A | 297 | Putative sarcosine dimethylglycine methyltransfera | 99.61 | |
| 3f4k_A | 257 | Putative methyltransferase; structural genomics, P | 99.6 | |
| 3jwg_A | 219 | HEN1, methyltransferase type 12; 1.90A {Clostridiu | 99.6 | |
| 3vc1_A | 312 | Geranyl diphosphate 2-C-methyltransferase; rossman | 99.59 | |
| 3kkz_A | 267 | Uncharacterized protein Q5LES9; putative methyltra | 99.59 | |
| 3bxo_A | 239 | N,N-dimethyltransferase; desosamine, sugar, carboh | 99.59 | |
| 2fk8_A | 318 | Methoxy mycolic acid synthase 4; S-adenosylmethion | 99.59 | |
| 2yqz_A | 263 | Hypothetical protein TTHA0223; RNA methyltransfera | 99.58 | |
| 2g72_A | 289 | Phenylethanolamine N-methyltransferase; HET: SAM F | 99.58 | |
| 1xxl_A | 239 | YCGJ protein; structural genomics, protein structu | 99.58 | |
| 3i9f_A | 170 | Putative type 11 methyltransferase; structural gen | 99.57 | |
| 1ve3_A | 227 | Hypothetical protein PH0226; dimer, riken structur | 99.57 | |
| 3ege_A | 261 | Putative methyltransferase from antibiotic biosyn | 99.57 | |
| 3gu3_A | 284 | Methyltransferase; alpha-beta protein, structural | 99.55 | |
| 3cgg_A | 195 | SAM-dependent methyltransferase; NP_600671.1, meth | 99.55 | |
| 3thr_A | 293 | Glycine N-methyltransferase; GNMT, folate, methylt | 99.55 | |
| 2p8j_A | 209 | S-adenosylmethionine-dependent methyltransferase; | 99.54 | |
| 3m70_A | 286 | Tellurite resistance protein TEHB homolog; structu | 99.54 | |
| 4hg2_A | 257 | Methyltransferase type 11; structural genomics, PS | 99.53 | |
| 3mgg_A | 276 | Methyltransferase; NYSGXRC, PSI-II, protein struct | 99.52 | |
| 1vlm_A | 219 | SAM-dependent methyltransferase; possible histamin | 99.51 | |
| 3ggd_A | 245 | SAM-dependent methyltransferase; YP_325210.1, stru | 99.51 | |
| 3grz_A | 205 | L11 mtase, ribosomal protein L11 methyltransferase | 99.51 | |
| 3ofk_A | 216 | Nodulation protein S; NODS, N-methyltransferase, S | 99.51 | |
| 3ocj_A | 305 | Putative exported protein; structural genomics, PS | 99.5 | |
| 4e2x_A | 416 | TCAB9; kijanose, tetronitrose, tetradeoxy sugar, s | 99.5 | |
| 1zx0_A | 236 | Guanidinoacetate N-methyltransferase; structural g | 99.49 | |
| 3m33_A | 226 | Uncharacterized protein; structural genomics, PSI- | 99.49 | |
| 2vdw_A | 302 | Vaccinia virus capping enzyme D1 subunit; nucleoti | 99.49 | |
| 3g07_A | 292 | 7SK snRNA methylphosphate capping enzyme; structur | 99.48 | |
| 4fsd_A | 383 | Arsenic methyltransferase; rossmann fold; 1.75A {C | 99.47 | |
| 3mti_A | 185 | RRNA methylase; SAM-dependent, PSI, MCSG, structur | 99.47 | |
| 2pxx_A | 215 | Uncharacterized protein MGC2408; structural genomi | 99.47 | |
| 3e05_A | 204 | Precorrin-6Y C5,15-methyltransferase (decarboxyla; | 99.47 | |
| 3mq2_A | 218 | 16S rRNA methyltransferase; methyltranferase, ribo | 99.46 | |
| 3orh_A | 236 | Guanidinoacetate N-methyltransferase; structura ge | 99.45 | |
| 2avn_A | 260 | Ubiquinone/menaquinone biosynthesis methyltransfe | 99.45 | |
| 3bgv_A | 313 | MRNA CAP guanine-N7 methyltransferase; alternative | 99.45 | |
| 2aot_A | 292 | HMT, histamine N-methyltransferase; classic methyl | 99.44 | |
| 2nxc_A | 254 | L11 mtase, ribosomal protein L11 methyltransferase | 99.44 | |
| 1xdz_A | 240 | Methyltransferase GIDB; MCSG, protein structure in | 99.44 | |
| 3njr_A | 204 | Precorrin-6Y methylase; methyltransferase, decarbo | 99.44 | |
| 2zfu_A | 215 | Nucleomethylin, cerebral protein 1; nucleolar prot | 99.43 | |
| 3g5t_A | 299 | Trans-aconitate 3-methyltransferase; structural ge | 99.42 | |
| 2r3s_A | 335 | Uncharacterized protein; methyltransferase domain, | 99.42 | |
| 2gs9_A | 211 | Hypothetical protein TT1324; methyl transferase, s | 99.42 | |
| 3g89_A | 249 | Ribosomal RNA small subunit methyltransferase G; 1 | 99.42 | |
| 3bkx_A | 275 | SAM-dependent methyltransferase; YP_807781.1, cycl | 99.42 | |
| 3hm2_A | 178 | Precorrin-6Y C5,15-methyltransferase; alpha-beta-s | 99.41 | |
| 3p2e_A | 225 | 16S rRNA methylase; methyltransferase, transferase | 99.41 | |
| 3r0q_C | 376 | Probable protein arginine N-methyltransferase 4.2; | 99.4 | |
| 3evz_A | 230 | Methyltransferase; NYSGXRC, NEW YORK SGX research | 99.4 | |
| 1nt2_A | 210 | Fibrillarin-like PRE-rRNA processing protein; adeM | 99.4 | |
| 3q87_B | 170 | N6 adenine specific DNA methylase; SAM-methyltrans | 99.39 | |
| 3p9n_A | 189 | Possible methyltransferase (methylase); RV2966C, a | 99.38 | |
| 1fbn_A | 230 | MJ fibrillarin homologue; MJ proteins, ribosomal R | 99.38 | |
| 1l3i_A | 192 | Precorrin-6Y methyltransferase/putative decarboxyl | 99.38 | |
| 1dus_A | 194 | MJ0882; hypothetical protein, methanococcus jannas | 99.37 | |
| 2fyt_A | 340 | Protein arginine N-methyltransferase 3; structural | 99.37 | |
| 3dp7_A | 363 | SAM-dependent methyltransferase; structural genomi | 99.37 | |
| 3iv6_A | 261 | Putative Zn-dependent alcohol dehydrogenase; alpha | 99.36 | |
| 3lpm_A | 259 | Putative methyltransferase; structural genomics, p | 99.36 | |
| 3q7e_A | 349 | Protein arginine N-methyltransferase 1; HET: SAH; | 99.35 | |
| 1jsx_A | 207 | Glucose-inhibited division protein B; methyltransf | 99.35 | |
| 1g6q_1 | 328 | HnRNP arginine N-methyltransferase; SAM-binding do | 99.34 | |
| 3fpf_A | 298 | Mtnas, putative uncharacterized protein; thermonic | 99.34 | |
| 3opn_A | 232 | Putative hemolysin; structural genomics, PSI-2, pr | 99.34 | |
| 2frn_A | 278 | Hypothetical protein PH0793; structural genomics, | 99.34 | |
| 1g8a_A | 227 | Fibrillarin-like PRE-rRNA processing protein; rRNA | 99.34 | |
| 3eey_A | 197 | Putative rRNA methylase; rRNA methylation, S-adeno | 99.33 | |
| 3mcz_A | 352 | O-methyltransferase; adomet_mtases, S-adenosylmeth | 99.33 | |
| 1ws6_A | 171 | Methyltransferase; structural genomics, riken stru | 99.33 | |
| 2yxd_A | 183 | Probable cobalt-precorrin-6Y C(15)-methyltransfer | 99.33 | |
| 2fca_A | 213 | TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bac | 99.33 | |
| 3mb5_A | 255 | SAM-dependent methyltransferase; RNA methyltransfe | 99.32 | |
| 2ipx_A | 233 | RRNA 2'-O-methyltransferase fibrillarin; FBL, stru | 99.32 | |
| 3gwz_A | 369 | MMCR; methyltransferase, mitomycin, S-adenosyl met | 99.32 | |
| 1yzh_A | 214 | TRNA (guanine-N(7)-)-methyltransferase; alpha-beta | 99.32 | |
| 1x19_A | 359 | CRTF-related protein; methyltransferase, bacterioc | 99.31 | |
| 3ntv_A | 232 | MW1564 protein; rossmann fold, putative methyltran | 99.31 | |
| 3u81_A | 221 | Catechol O-methyltransferase; neurotransmitter deg | 99.3 | |
| 2b3t_A | 276 | Protein methyltransferase HEMK; translation termin | 99.3 | |
| 3dmg_A | 381 | Probable ribosomal RNA small subunit methyltransf; | 99.29 | |
| 4df3_A | 233 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.29 | |
| 3gdh_A | 241 | Trimethylguanosine synthase homolog; M7G, CAP, dim | 99.29 | |
| 1yb2_A | 275 | Hypothetical protein TA0852; structural genomics, | 99.29 | |
| 1qzz_A | 374 | RDMB, aclacinomycin-10-hydroxylase; anthracycline, | 99.29 | |
| 2ift_A | 201 | Putative methylase HI0767; NESG, Y767_haein, struc | 99.29 | |
| 2pwy_A | 258 | TRNA (adenine-N(1)-)-methyltransferase; mtase, ado | 99.28 | |
| 4dzr_A | 215 | Protein-(glutamine-N5) methyltransferase, release | 99.28 | |
| 2ip2_A | 334 | Probable phenazine-specific methyltransferase; pyo | 99.28 | |
| 3tfw_A | 248 | Putative O-methyltransferase; PSI-biology, nysgrc, | 99.28 | |
| 2esr_A | 177 | Methyltransferase; structural genomics, hypothetic | 99.27 | |
| 3i53_A | 332 | O-methyltransferase; CO-complex, rossmann-like fol | 99.27 | |
| 3bwc_A | 304 | Spermidine synthase; SAM, SGPP, structura genomics | 99.26 | |
| 1tw3_A | 360 | COMT, carminomycin 4-O-methyltransferase; anthracy | 99.25 | |
| 3hp7_A | 291 | Hemolysin, putative; structural genomics, APC64019 | 99.25 | |
| 3lbf_A | 210 | Protein-L-isoaspartate O-methyltransferase; modifi | 99.25 | |
| 3bzb_A | 281 | Uncharacterized protein; RED ALGA, protein structu | 99.25 | |
| 2qe6_A | 274 | Uncharacterized protein TFU_2867; putative methylt | 99.25 | |
| 1p91_A | 269 | Ribosomal RNA large subunit methyltransferase A; R | 99.25 | |
| 3uwp_A | 438 | Histone-lysine N-methyltransferase, H3 lysine-79; | 99.25 | |
| 2fhp_A | 187 | Methylase, putative; alpha-beta-alpha sandwich, st | 99.24 | |
| 3htx_A | 950 | HEN1; HEN1, small RNA methyltransferase, protein-R | 99.24 | |
| 1o9g_A | 250 | RRNA methyltransferase; antibiotic resistance, Se- | 99.23 | |
| 4hc4_A | 376 | Protein arginine N-methyltransferase 6; HRMT1L6, S | 99.23 | |
| 3duw_A | 223 | OMT, O-methyltransferase, putative; alternating of | 99.23 | |
| 1o54_A | 277 | SAM-dependent O-methyltransferase; TM0748, structu | 99.22 | |
| 2h00_A | 254 | Methyltransferase 10 domain containing protein; st | 99.22 | |
| 3dxy_A | 218 | TRNA (guanine-N(7)-)-methyltransferase; rossmann f | 99.22 | |
| 1vbf_A | 231 | 231AA long hypothetical protein-L-isoaspartate O- | 99.22 | |
| 2y1w_A | 348 | Histone-arginine methyltransferase CARM1; histone | 99.22 | |
| 2fpo_A | 202 | Methylase YHHF; structural genomics, putative meth | 99.22 | |
| 3tr6_A | 225 | O-methyltransferase; cellular processes; HET: SAH; | 99.22 | |
| 2pjd_A | 343 | Ribosomal RNA small subunit methyltransferase C; g | 99.21 | |
| 3dr5_A | 221 | Putative O-methyltransferase; Q8NRD3, CGL1119, PF0 | 99.21 | |
| 3reo_A | 368 | (ISO)eugenol O-methyltransferase; directed evoluti | 99.2 | |
| 1wy7_A | 207 | Hypothetical protein PH1948; seven-stranded beta s | 99.2 | |
| 1ej0_A | 180 | FTSJ; methyltransferase, adoMet, adenosyl methioni | 99.18 | |
| 3tma_A | 354 | Methyltransferase; thump domain; 2.05A {Thermus th | 99.18 | |
| 2ozv_A | 260 | Hypothetical protein ATU0636; structural genomics, | 99.17 | |
| 3fzg_A | 200 | 16S rRNA methylase; methyltransferase, plasmid, tr | 99.17 | |
| 3p9c_A | 364 | Caffeic acid O-methyltransferase; S-adenosylmethio | 99.17 | |
| 3c3p_A | 210 | Methyltransferase; NP_951602.1, structural genomic | 99.16 | |
| 2igt_A | 332 | SAM dependent methyltransferase; alpha-beta sandwi | 99.16 | |
| 4dcm_A | 375 | Ribosomal RNA large subunit methyltransferase G; 2 | 99.16 | |
| 2yvl_A | 248 | TRMI protein, hypothetical protein; tRNA, methyltr | 99.16 | |
| 3kr9_A | 225 | SAM-dependent methyltransferase; class I rossmann- | 99.16 | |
| 3lec_A | 230 | NADB-rossmann superfamily protein; PSI, MCSG, stru | 99.15 | |
| 3lst_A | 348 | CALO1 methyltransferase; calicheamicin, enediyne, | 99.15 | |
| 3ckk_A | 235 | TRNA (guanine-N(7)-)-methyltransferase; mettl1, S- | 99.14 | |
| 3id6_C | 232 | Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; | 99.14 | |
| 2yxe_A | 215 | Protein-L-isoaspartate O-methyltransferase; rossma | 99.14 | |
| 2gpy_A | 233 | O-methyltransferase; structural genomics, PSI, pro | 99.13 | |
| 2ld4_A | 176 | Anamorsin; methyltransferase-like fold, alpha/beta | 99.13 | |
| 1fp1_D | 372 | Isoliquiritigenin 2'-O-methyltransferase; protein- | 99.12 | |
| 1fp2_A | 352 | Isoflavone O-methyltransferase; protein-product co | 99.12 | |
| 1u2z_A | 433 | Histone-lysine N-methyltransferase, H3 lysine-79 s | 99.12 | |
| 3cbg_A | 232 | O-methyltransferase; cyanobacterium; HET: SAH FER | 99.11 | |
| 3tm4_A | 373 | TRNA (guanine N2-)-methyltransferase TRM14; rossma | 99.1 | |
| 1i9g_A | 280 | Hypothetical protein RV2118C; mtase, adoMet, cryst | 99.1 | |
| 3b3j_A | 480 | Histone-arginine methyltransferase CARM1; protein | 99.1 | |
| 4a6d_A | 353 | Hydroxyindole O-methyltransferase; melatonin, circ | 99.1 | |
| 1sui_A | 247 | Caffeoyl-COA O-methyltransferase; rossmann fold, p | 99.1 | |
| 3r3h_A | 242 | O-methyltransferase, SAM-dependent; structural gen | 99.09 | |
| 3gnl_A | 244 | Uncharacterized protein, DUF633, LMOF2365_1472; st | 99.09 | |
| 2wa2_A | 276 | Non-structural protein 5; transferase, S-adenosyl- | 99.09 | |
| 2avd_A | 229 | Catechol-O-methyltransferase; structural genomics, | 99.08 | |
| 1nv8_A | 284 | HEMK protein; class I adoMet-dependent methyltrans | 99.08 | |
| 2plw_A | 201 | Ribosomal RNA methyltransferase, putative; malaria | 99.08 | |
| 2hnk_A | 239 | SAM-dependent O-methyltransferase; modified rossma | 99.08 | |
| 3adn_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 99.08 | |
| 1dl5_A | 317 | Protein-L-isoaspartate O-methyltransferase; isoasp | 99.08 | |
| 2bm8_A | 236 | Cephalosporin hydroxylase CMCI; cephamycin biosynt | 99.07 | |
| 2vdv_E | 246 | TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl | 99.07 | |
| 3c3y_A | 237 | Pfomt, O-methyltransferase; plant secondary metabo | 99.06 | |
| 2pbf_A | 227 | Protein-L-isoaspartate O-methyltransferase beta-A | 99.05 | |
| 1af7_A | 274 | Chemotaxis receptor methyltransferase CHER; chemot | 99.04 | |
| 3dou_A | 191 | Ribosomal RNA large subunit methyltransferase J; c | 99.04 | |
| 4azs_A | 569 | Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15 | 99.04 | |
| 1jg1_A | 235 | PIMT;, protein-L-isoaspartate O-methyltransferase; | 99.0 | |
| 1ne2_A | 200 | Hypothetical protein TA1320; structural genomics, | 99.0 | |
| 1i1n_A | 226 | Protein-L-isoaspartate O-methyltransferase; S-aden | 99.0 | |
| 1uir_A | 314 | Polyamine aminopropyltransferase; spermidien synth | 99.0 | |
| 1xj5_A | 334 | Spermidine synthase 1; structural genomics, protei | 98.99 | |
| 2qm3_A | 373 | Predicted methyltransferase; putative methyltransf | 98.99 | |
| 2nyu_A | 196 | Putative ribosomal RNA methyltransferase 2; SAM, s | 98.98 | |
| 2b78_A | 385 | Hypothetical protein SMU.776; structure genomics, | 98.97 | |
| 1mjf_A | 281 | Spermidine synthase; spermidine synthetase, struct | 98.97 | |
| 3k6r_A | 278 | Putative transferase PH0793; structural genomics, | 98.97 | |
| 1r18_A | 227 | Protein-L-isoaspartate(D-aspartate)-O-methyltrans; | 98.96 | |
| 1zg3_A | 358 | Isoflavanone 4'-O-methyltransferase; rossman fold, | 98.95 | |
| 2i7c_A | 283 | Spermidine synthase; transferase, structural genom | 98.95 | |
| 1zq9_A | 285 | Probable dimethyladenosine transferase; SGC, struc | 98.95 | |
| 3gjy_A | 317 | Spermidine synthase; APC62791, structural genomics | 98.95 | |
| 1inl_A | 296 | Spermidine synthase; beta-barrel, rossman fold, st | 98.95 | |
| 2o07_A | 304 | Spermidine synthase; structural genomics, structur | 98.94 | |
| 1ixk_A | 315 | Methyltransferase; open beta sheet; 1.90A {Pyrococ | 98.94 | |
| 3sso_A | 419 | Methyltransferase; macrolide, natural product, ros | 98.94 | |
| 2ih2_A | 421 | Modification methylase TAQI; DNA, DNA methyltransf | 98.93 | |
| 2oxt_A | 265 | Nucleoside-2'-O-methyltransferase; flavivirus, vir | 98.93 | |
| 2b25_A | 336 | Hypothetical protein; structural genomics, methyl | 98.92 | |
| 2pt6_A | 321 | Spermidine synthase; transferase, structural genom | 98.92 | |
| 3a27_A | 272 | TYW2, uncharacterized protein MJ1557; wybutosine m | 98.91 | |
| 2b2c_A | 314 | Spermidine synthase; beta-alpha, transferase; 2.50 | 98.9 | |
| 1iy9_A | 275 | Spermidine synthase; rossmann fold, structural gen | 98.9 | |
| 2p41_A | 305 | Type II methyltransferase; vizier, viral enzymes i | 98.86 | |
| 4dmg_A | 393 | Putative uncharacterized protein TTHA1493; rRNA, m | 98.86 | |
| 2h1r_A | 299 | Dimethyladenosine transferase, putative; SGC toron | 98.83 | |
| 2cmg_A | 262 | Spermidine synthase; transferase, putrescine amino | 98.82 | |
| 2as0_A | 396 | Hypothetical protein PH1915; RNA methyltransferase | 98.81 | |
| 1qam_A | 244 | ERMC' methyltransferase; rRNA methyltransferase ER | 98.79 | |
| 3giw_A | 277 | Protein of unknown function DUF574; rossmann-fold | 98.78 | |
| 3c0k_A | 396 | UPF0064 protein YCCW; PUA domain, adoMet dependent | 98.76 | |
| 3ajd_A | 274 | Putative methyltransferase MJ0026; tRNA, M5C, ross | 98.75 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.74 | |
| 2okc_A | 445 | Type I restriction enzyme stysji M protein; NP_813 | 98.74 | |
| 2yx1_A | 336 | Hypothetical protein MJ0883; methyl transferase, t | 98.73 | |
| 2f8l_A | 344 | Hypothetical protein LMO1582; structural genomics, | 98.73 | |
| 3frh_A | 253 | 16S rRNA methylase; methyltransferase domain, heli | 98.7 | |
| 1yub_A | 245 | Ermam, rRNA methyltransferase; MLS antibiotics; NM | 98.69 | |
| 1wxx_A | 382 | TT1595, hypothetical protein TTHA1280; thermus the | 98.66 | |
| 2xyq_A | 290 | Putative 2'-O-methyl transferase; transferase-vira | 98.66 | |
| 3ldu_A | 385 | Putative methylase; structural genomics, PSI-2, pr | 98.61 | |
| 3k0b_A | 393 | Predicted N6-adenine-specific DNA methylase; methy | 98.6 | |
| 2yxl_A | 450 | PH0851 protein, 450AA long hypothetical FMU protei | 98.6 | |
| 3ldg_A | 384 | Putative uncharacterized protein SMU.472; YPSC, me | 98.55 | |
| 2jjq_A | 425 | Uncharacterized RNA methyltransferase pyrab10780; | 98.52 | |
| 3m4x_A | 456 | NOL1/NOP2/SUN family protein; mtase domain, PUA do | 98.52 | |
| 3lcv_B | 281 | Sisomicin-gentamicin resistance methylase SGM; ant | 98.51 | |
| 1sqg_A | 429 | SUN protein, FMU protein; rossmann-fold, mixed bet | 98.49 | |
| 3gru_A | 295 | Dimethyladenosine transferase; rossman fold, ribos | 98.48 | |
| 1uwv_A | 433 | 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA m | 98.47 | |
| 2frx_A | 479 | Hypothetical protein YEBU; rossmann-type S-adenosy | 98.47 | |
| 3b5i_A | 374 | S-adenosyl-L-methionine:salicylic acid carboxyl me | 98.45 | |
| 3m6w_A | 464 | RRNA methylase; rRNA methyltransferase, 5-methylcy | 98.43 | |
| 3fut_A | 271 | Dimethyladenosine transferase; methyltransferase, | 98.42 | |
| 2qfm_A | 364 | Spermine synthase; spermidine aminopropyltransfera | 98.35 | |
| 3bt7_A | 369 | TRNA (uracil-5-)-methyltransferase; methyluridine, | 98.35 | |
| 4gqb_A | 637 | Protein arginine N-methyltransferase 5; TIM barrel | 98.32 | |
| 2dul_A | 378 | N(2),N(2)-dimethylguanosine tRNA methyltransferas; | 98.32 | |
| 3tqs_A | 255 | Ribosomal RNA small subunit methyltransferase A; p | 98.31 | |
| 3v97_A | 703 | Ribosomal RNA large subunit methyltransferase L; Y | 98.25 | |
| 2ar0_A | 541 | M.ecoki, type I restriction enzyme ecoki M protein | 98.25 | |
| 2r6z_A | 258 | UPF0341 protein in RSP 3' region; alpha-beta prote | 98.14 | |
| 3khk_A | 544 | Type I restriction-modification system methylation | 98.13 | |
| 1qyr_A | 252 | KSGA, high level kasugamycin resistance protein, S | 98.11 | |
| 3ftd_A | 249 | Dimethyladenosine transferase; KSGA, rossmann-like | 98.07 | |
| 2efj_A | 384 | 3,7-dimethylxanthine methyltransferase; SAM-depend | 98.06 | |
| 3axs_A | 392 | Probable N(2),N(2)-dimethylguanosine tRNA methylt | 98.06 | |
| 3ua3_A | 745 | Protein arginine N-methyltransferase 5; TIM-barrel | 98.05 | |
| 3lkd_A | 542 | Type I restriction-modification system methyltrans | 98.02 | |
| 3o4f_A | 294 | Spermidine synthase; aminopropyltransferase, polya | 98.01 | |
| 1m6y_A | 301 | S-adenosyl-methyltransferase MRAW; SAM-dependent m | 98.0 | |
| 2qy6_A | 257 | UPF0209 protein YFCK; structural genomics, unknown | 97.99 | |
| 2oyr_A | 258 | UPF0341 protein YHIQ; alpha-beta protein, structur | 97.99 | |
| 3s1s_A | 878 | Restriction endonuclease bpusi; PD--(D/E)XK cataly | 97.98 | |
| 1m6e_X | 359 | S-adenosyl-L-methionnine:salicylic acid carboxyl m | 97.98 | |
| 2k4m_A | 153 | TR8_protein, UPF0146 protein MTH_1000; alpha+beta, | 97.94 | |
| 3ll7_A | 410 | Putative methyltransferase; methytransferase, stru | 97.89 | |
| 3uzu_A | 279 | Ribosomal RNA small subunit methyltransferase A; s | 97.86 | |
| 2b9e_A | 309 | NOL1/NOP2/SUN domain family, member 5 isoform 2; m | 97.75 | |
| 3c6k_A | 381 | Spermine synthase; spermidine aminopropyltransfera | 97.6 | |
| 3cvo_A | 202 | Methyltransferase-like protein of unknown functio; | 97.57 | |
| 3evf_A | 277 | RNA-directed RNA polymerase NS5; NS5 methyltransfe | 97.57 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 97.53 | |
| 2wk1_A | 282 | NOVP; transferase, O-methyltransferase, novobiocin | 97.41 | |
| 4auk_A | 375 | Ribosomal RNA large subunit methyltransferase M; Y | 97.35 | |
| 3ufb_A | 530 | Type I restriction-modification system methyltran | 96.96 | |
| 3gcz_A | 282 | Polyprotein; flavivirus, RNA capping, methyltransf | 96.87 | |
| 1wg8_A | 285 | Predicted S-adenosylmethionine-dependent methyltra | 96.76 | |
| 2px2_A | 269 | Genome polyprotein [contains: capsid protein C (co | 96.7 | |
| 3eld_A | 300 | Methyltransferase; flavivirus, RNA capping, guanyl | 96.58 | |
| 1g60_A | 260 | Adenine-specific methyltransferase MBOIIA; structu | 96.28 | |
| 2c7p_A | 327 | Modification methylase HHAI; DNA methyltransferase | 96.07 | |
| 4fzv_A | 359 | Putative methyltransferase NSUN4; mterf fold, meth | 95.59 | |
| 3r24_A | 344 | NSP16, 2'-O-methyl transferase; methyltransferase, | 95.38 | |
| 3g7u_A | 376 | Cytosine-specific methyltransferase; DNA-binding, | 95.36 | |
| 1rjd_A | 334 | PPM1P, carboxy methyl transferase for protein phos | 95.34 | |
| 1pqw_A | 198 | Polyketide synthase; rossmann fold, dimer, structu | 95.3 | |
| 3vyw_A | 308 | MNMC2; tRNA wobble uridine, modification enzyme, g | 94.96 | |
| 1g55_A | 343 | DNA cytosine methyltransferase DNMT2; human DNA me | 94.95 | |
| 2dph_A | 398 | Formaldehyde dismutase; dismutation of aldehydes, | 94.89 | |
| 1f8f_A | 371 | Benzyl alcohol dehydrogenase; rossmann fold, oxido | 94.85 | |
| 3s2e_A | 340 | Zinc-containing alcohol dehydrogenase superfamily; | 94.74 | |
| 3fpc_A | 352 | NADP-dependent alcohol dehydrogenase; oxydoreducta | 94.66 | |
| 4ej6_A | 370 | Putative zinc-binding dehydrogenase; structural ge | 94.65 | |
| 3m6i_A | 363 | L-arabinitol 4-dehydrogenase; medium chain dehydro | 94.63 | |
| 3lkz_A | 321 | Non-structural protein 5; flavivirus, methyltransf | 94.48 | |
| 3ubt_Y | 331 | Modification methylase HAEIII; protein-DNA complex | 94.44 | |
| 3ip1_A | 404 | Alcohol dehydrogenase, zinc-containing; structural | 94.41 | |
| 3two_A | 348 | Mannitol dehydrogenase; cinnamyl-alcohol dehydroge | 94.31 | |
| 1pl8_A | 356 | Human sorbitol dehydrogenase; NAD, oxidoreductase; | 94.25 | |
| 1v3u_A | 333 | Leukotriene B4 12- hydroxydehydrogenase/prostaglan | 94.18 | |
| 4b7c_A | 336 | Probable oxidoreductase; NADP cofactor, rossmann f | 94.09 | |
| 2zig_A | 297 | TTHA0409, putative modification methylase; methylt | 93.97 | |
| 3gms_A | 340 | Putative NADPH:quinone reductase; structural genom | 93.91 | |
| 1uuf_A | 369 | YAHK, zinc-type alcohol dehydrogenase-like protein | 93.9 | |
| 3qwb_A | 334 | Probable quinone oxidoreductase; rossmann fold, qu | 93.87 | |
| 3me5_A | 482 | Cytosine-specific methyltransferase; structural ge | 93.84 | |
| 3uko_A | 378 | Alcohol dehydrogenase class-3; alcohol dehydrogena | 93.7 | |
| 1e3j_A | 352 | NADP(H)-dependent ketose reductase; oxidoreductase | 93.58 | |
| 2eih_A | 343 | Alcohol dehydrogenase; zinc ION binding protein, s | 93.55 | |
| 3p8z_A | 267 | Mtase, non-structural protein 5; methyltransferase | 93.43 | |
| 2j3h_A | 345 | NADP-dependent oxidoreductase P1; double bond redu | 93.42 | |
| 3uog_A | 363 | Alcohol dehydrogenase; structural genomics, protei | 93.34 | |
| 1kol_A | 398 | Formaldehyde dehydrogenase; oxidoreductase; HET: N | 93.21 | |
| 3qv2_A | 327 | 5-cytosine DNA methyltransferase; DNMT2, ehmeth; H | 93.2 | |
| 3jyn_A | 325 | Quinone oxidoreductase; rossmann fold, protein-NAD | 93.18 | |
| 4eye_A | 342 | Probable oxidoreductase; structural genomics, niai | 93.13 | |
| 3goh_A | 315 | Alcohol dehydrogenase, zinc-containing; NP_718042. | 93.12 | |
| 1p0f_A | 373 | NADP-dependent alcohol dehydrogenase; ADH topology | 93.04 | |
| 1cdo_A | 374 | Alcohol dehydrogenase; oxidoreductase, oxidoreduct | 92.82 | |
| 2hcy_A | 347 | Alcohol dehydrogenase 1; tetramer of asymmetric di | 92.76 | |
| 1rjw_A | 339 | ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD | 92.65 | |
| 2fzw_A | 373 | Alcohol dehydrogenase class III CHI chain; S-nitro | 92.64 | |
| 3nx4_A | 324 | Putative oxidoreductase; csgid, structural genomic | 92.64 | |
| 2d8a_A | 348 | PH0655, probable L-threonine 3-dehydrogenase; pyro | 92.58 | |
| 2jhf_A | 374 | Alcohol dehydrogenase E chain; oxidoreductase, met | 92.53 | |
| 1yb5_A | 351 | Quinone oxidoreductase; medium-chain dehydrogenase | 92.51 | |
| 1wly_A | 333 | CAAR, 2-haloacrylate reductase; NADPH-dependent ox | 92.39 | |
| 2h6e_A | 344 | ADH-4, D-arabinose 1-dehydrogenase; rossman fold, | 92.36 | |
| 1iz0_A | 302 | Quinone oxidoreductase; APO-enzyme, riken structur | 92.23 | |
| 2c0c_A | 362 | Zinc binding alcohol dehydrogenase, domain contain | 92.05 | |
| 1e3i_A | 376 | Alcohol dehydrogenase, class II; HET: NAD; 2.08A { | 92.03 | |
| 1piw_A | 360 | Hypothetical zinc-type alcohol dehydrogenase- like | 92.01 | |
| 1qor_A | 327 | Quinone oxidoreductase; HET: NAP; 2.20A {Escherich | 92.0 | |
| 2j8z_A | 354 | Quinone oxidoreductase; medium-chain dehydrogenase | 91.86 | |
| 4dup_A | 353 | Quinone oxidoreductase; PSI-biology, structural ge | 91.79 | |
| 1vj0_A | 380 | Alcohol dehydrogenase, zinc-containing; TM0436, st | 91.53 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 91.39 | |
| 3krt_A | 456 | Crotonyl COA reductase; structural genomics, prote | 91.3 | |
| 2dq4_A | 343 | L-threonine 3-dehydrogenase; NAD-dependent, oxidor | 91.25 | |
| 1i4w_A | 353 | Mitochondrial replication protein MTF1; mitochondr | 91.15 | |
| 4a0s_A | 447 | Octenoyl-COA reductase/carboxylase; oxidoreductase | 91.12 | |
| 4h0n_A | 333 | DNMT2; SAH binding, transferase; HET: SAH; 2.71A { | 90.91 | |
| 3jv7_A | 345 | ADH-A; dehydrogenase, nucleotide binding, rossmann | 90.84 | |
| 3c85_A | 183 | Putative glutathione-regulated potassium-efflux S | 90.81 | |
| 2zb4_A | 357 | Prostaglandin reductase 2; rossmann fold, alternat | 90.74 | |
| 3gaz_A | 343 | Alcohol dehydrogenase superfamily protein; oxidore | 90.54 | |
| 3h2s_A | 224 | Putative NADH-flavin reductase; Q03B84, NESG, LCR1 | 90.48 | |
| 1xa0_A | 328 | Putative NADPH dependent oxidoreductases; structur | 90.24 | |
| 3e8x_A | 236 | Putative NAD-dependent epimerase/dehydratase; stru | 89.78 | |
| 3pvc_A | 689 | TRNA 5-methylaminomethyl-2-thiouridine biosynthes | 89.55 | |
| 2b5w_A | 357 | Glucose dehydrogenase; nucleotide binding motif, o | 88.87 | |
| 1tt7_A | 330 | YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st | 88.86 | |
| 3gqv_A | 371 | Enoyl reductase; medium-chain reductase (MDR super | 88.68 | |
| 3oig_A | 266 | Enoyl-[acyl-carrier-protein] reductase [NADH]; fat | 88.42 | |
| 2oo3_A | 283 | Protein involved in catabolism of external DNA; st | 88.22 | |
| 3dqp_A | 219 | Oxidoreductase YLBE; alpha-beta protein., structur | 88.03 | |
| 4e21_A | 358 | 6-phosphogluconate dehydrogenase (decarboxylating; | 87.86 | |
| 3k6j_A | 460 | Protein F01G10.3, confirmed by transcript evidenc; | 87.72 | |
| 1boo_A | 323 | Protein (N-4 cytosine-specific methyltransferase P | 87.65 | |
| 4dvj_A | 363 | Putative zinc-dependent alcohol dehydrogenase Pro; | 87.6 | |
| 1yqd_A | 366 | Sinapyl alcohol dehydrogenase; lignin, monolignol, | 87.27 | |
| 2cdc_A | 366 | Glucose dehydrogenase glucose 1-dehydrogenase, DHG | 87.25 | |
| 1eg2_A | 319 | Modification methylase RSRI; rossmann fold, exocyc | 87.23 | |
| 3ggo_A | 314 | Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b | 86.85 | |
| 3g0o_A | 303 | 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine | 86.57 | |
| 4dll_A | 320 | 2-hydroxy-3-oxopropionate reductase; structural ge | 86.52 | |
| 3kkj_A | 336 | Amine oxidase, flavin-containing; oxidoreductase, | 86.41 | |
| 2vn8_A | 375 | Reticulon-4-interacting protein 1; mitochondrion, | 86.34 | |
| 2vhw_A | 377 | Alanine dehydrogenase; NAD, secreted, oxidoreducta | 85.64 | |
| 4e12_A | 283 | Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1 | 85.59 | |
| 1y1p_A | 342 | ARII, aldehyde reductase II; rossmann fold, short | 85.56 | |
| 3p2y_A | 381 | Alanine dehydrogenase/pyridine nucleotide transhy; | 85.53 | |
| 4a2c_A | 346 | Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc | 85.26 | |
| 2eez_A | 369 | Alanine dehydrogenase; TTHA0216, structural genomi | 84.98 | |
| 1zcj_A | 463 | Peroxisomal bifunctional enzyme; peroxisomal multi | 84.63 | |
| 1l7d_A | 384 | Nicotinamide nucleotide transhydrogenase, subunit | 84.52 | |
| 3ew7_A | 221 | LMO0794 protein; Q8Y8U8_lismo, putative NAD-depend | 84.33 | |
| 4dgk_A | 501 | Phytoene dehydrogenase; the FAD/NAD(P)-binding ros | 84.17 | |
| 3ce6_A | 494 | Adenosylhomocysteinase; protein-substrate complex, | 84.06 | |
| 3tqh_A | 321 | Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella | 84.02 | |
| 2g76_A | 335 | 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor | 83.9 | |
| 3fbg_A | 346 | Putative arginate lyase; structural genomics, unkn | 83.78 | |
| 3ius_A | 286 | Uncharacterized conserved protein; APC63810, silic | 83.72 | |
| 3qha_A | 296 | Putative oxidoreductase; seattle structural genomi | 83.65 | |
| 4dio_A | 405 | NAD(P) transhydrogenase subunit alpha PART 1; stru | 83.38 | |
| 2ekl_A | 313 | D-3-phosphoglycerate dehydrogenase; structural gen | 82.84 | |
| 1x13_A | 401 | NAD(P) transhydrogenase subunit alpha; NAD(H)-bind | 82.59 | |
| 3slk_A | 795 | Polyketide synthase extender module 2; rossmann fo | 82.41 | |
| 2vz8_A | 2512 | Fatty acid synthase; transferase, phosphopantethei | 82.11 | |
| 2f1k_A | 279 | Prephenate dehydrogenase; tyrosine synthesis, X-RA | 81.85 | |
| 3k96_A | 356 | Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA | 81.85 | |
| 3qiv_A | 253 | Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR | 81.65 | |
| 3gpi_A | 286 | NAD-dependent epimerase/dehydratase; structural ge | 81.32 | |
| 3o26_A | 311 | Salutaridine reductase; short chain dehydrogenase/ | 81.07 | |
| 2g5c_A | 281 | Prephenate dehydrogenase; TYRA, oxidoreductase; HE | 80.75 | |
| 4eez_A | 348 | Alcohol dehydrogenase 1; site-saturation mutagenes | 80.72 | |
| 1wwk_A | 307 | Phosphoglycerate dehydrogenase; riken structural g | 80.18 |
| >1pjz_A Thiopurine S-methyltransferase; polymorphism, S-adenosylmethionine, drug metabolism; NMR {Pseudomonas syringae PV} SCOP: c.66.1.36 | Back alignment and structure |
|---|
Probab=99.75 E-value=6e-18 Score=153.63 Aligned_cols=162 Identities=17% Similarity=0.129 Sum_probs=104.4
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
.+.+++...-. .++.+|||+|||+|+++..||++|+.|+|+|+|..|+..|+-... .. .. ....
T Consensus 10 ~l~~~~~~l~~----~~~~~vLD~GCG~G~~~~~la~~g~~V~gvD~S~~~l~~a~~~~~---~~--~~----~~~~--- 73 (203)
T 1pjz_A 10 DLQQYWSSLNV----VPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERG---EQ--PH----ITSQ--- 73 (203)
T ss_dssp HHHHHHHHHCC----CTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHC---SC--SE----EEEE---
T ss_pred HHHHHHHhccc----CCCCEEEEeCCCCcHhHHHHHHCCCeEEEEeCCHHHHHHHHHHcc---CC--cc----cccc---
Confidence 34455554321 256799999999999999999999999999999999987762211 00 00 0000
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCC-CCccEEEEeeccC--ChhhHHHHHHHHHHhccCCcE
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQV-GAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGV 329 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~-~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPGG~ 329 (397)
.+ .... ...++.++++|+.++.. .+ ++||+|++...+. +..+...+++.++++|||||+
T Consensus 74 ---~~-~~~~-----------~~~~v~~~~~d~~~l~~---~~~~~fD~v~~~~~l~~l~~~~~~~~l~~~~r~LkpgG~ 135 (203)
T 1pjz_A 74 ---GD-FKVY-----------AAPGIEIWCGDFFALTA---RDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACS 135 (203)
T ss_dssp ---TT-EEEE-----------ECSSSEEEEECCSSSTH---HHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEE
T ss_pred ---cc-cccc-----------cCCccEEEECccccCCc---ccCCCEEEEEECcchhhCCHHHHHHHHHHHHHHcCCCcE
Confidence 00 0000 01247889999988632 22 6899999754332 234577899999999999998
Q ss_pred EEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 330 WINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 330 wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
++-+. +.|.... .+++ .+.++.+|+++++.+ ||+++..+
T Consensus 136 ~~l~~-~~~~~~~-~~~~---~~~~~~~el~~~~~~-gf~i~~~~ 174 (203)
T 1pjz_A 136 GLLIT-LEYDQAL-LEGP---PFSVPQTWLHRVMSG-NWEVTKVG 174 (203)
T ss_dssp EEEEE-ESSCSSS-SSSC---CCCCCHHHHHHTSCS-SEEEEEEE
T ss_pred EEEEE-EecCccc-cCCC---CCCCCHHHHHHHhcC-CcEEEEec
Confidence 33211 1121111 1112 355899999999998 99988754
|
| >3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.3e-16 Score=145.31 Aligned_cols=153 Identities=18% Similarity=0.230 Sum_probs=114.7
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
..+++.|.+.++ ++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++-..
T Consensus 41 ~~~~~~l~~~~~-----~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~-------------------- 95 (242)
T 3l8d_A 41 STIIPFFEQYVK-----KEAEVLDVGCGDGYGTYKLSRTGYKAVGVDISEVMIQKGKERG-------------------- 95 (242)
T ss_dssp TTHHHHHHHHSC-----TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHTTT--------------------
T ss_pred HHHHHHHHHHcC-----CCCeEEEEcCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhc--------------------
Confidence 357888888775 4679999999999999999999999999999999997665110
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
...++.++.+|+.++- ...++||+|++...+...++...+++.++++|||||++|
T Consensus 96 ----------------------~~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~ 150 (242)
T 3l8d_A 96 ----------------------EGPDLSFIKGDLSSLP---FENEQFEAIMAINSLEWTEEPLRALNEIKRVLKSDGYAC 150 (242)
T ss_dssp ----------------------CBTTEEEEECBTTBCS---SCTTCEEEEEEESCTTSSSCHHHHHHHHHHHEEEEEEEE
T ss_pred ----------------------ccCCceEEEcchhcCC---CCCCCccEEEEcChHhhccCHHHHHHHHHHHhCCCeEEE
Confidence 0123778899988752 236899999998877766788899999999999999998
Q ss_pred Ee--cCCcch----hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 332 NL--GPLLYH----FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 332 N~--GPLlYh----~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
-. +|.... +....+ .......++.++++++++++||++++...
T Consensus 151 i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 199 (242)
T 3l8d_A 151 IAILGPTAKPRENSYPRLYG-KDVVCNTMMPWEFEQLVKEQGFKVVDGIG 199 (242)
T ss_dssp EEEECTTCGGGGGGGGGGGT-CCCSSCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred EEEcCCcchhhhhhhhhhcc-ccccccCCCHHHHHHHHHHcCCEEEEeec
Confidence 53 222111 111111 11112348999999999999999998653
|
| >3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.73 E-value=4.4e-17 Score=148.99 Aligned_cols=154 Identities=16% Similarity=0.160 Sum_probs=110.9
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCC
Q 015966 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p 269 (397)
+.+|||+|||+|+++..|++.|+.|+|+|+|..|+..++-.+...
T Consensus 67 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~----------------------------------- 111 (235)
T 3lcc_A 67 LGRALVPGCGGGHDVVAMASPERFVVGLDISESALAKANETYGSS----------------------------------- 111 (235)
T ss_dssp CEEEEEETCTTCHHHHHHCBTTEEEEEECSCHHHHHHHHHHHTTS-----------------------------------
T ss_pred CCCEEEeCCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHhhcc-----------------------------------
Confidence 459999999999999999999999999999999998776322100
Q ss_pred CCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCCh--hhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCC
Q 015966 270 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 347 (397)
Q Consensus 270 ~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta--~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~ 347 (397)
....++.++.+|+.++.. .++||+|++...+... .+...+++.++++|||||++|-... ...+..++
T Consensus 112 ---~~~~~v~~~~~d~~~~~~----~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~---~~~~~~~~- 180 (235)
T 3lcc_A 112 ---PKAEYFSFVKEDVFTWRP----TELFDLIFDYVFFCAIEPEMRPAWAKSMYELLKPDGELITLMY---PITDHVGG- 180 (235)
T ss_dssp ---GGGGGEEEECCCTTTCCC----SSCEEEEEEESSTTTSCGGGHHHHHHHHHHHEEEEEEEEEEEC---CCSCCCSC-
T ss_pred ---CCCcceEEEECchhcCCC----CCCeeEEEEChhhhcCCHHHHHHHHHHHHHHCCCCcEEEEEEe---cccccCCC-
Confidence 001237889999988532 4689999988765543 3788999999999999999995321 11111111
Q ss_pred CCccccCCHHHHHHHHHhCCCEEEEEeec--CCCCCCCcccccccc
Q 015966 348 DEMSIELSLEDVKRVALHYGFEFEKEKTI--ETTYTTNPRSMMQVS 391 (397)
Q Consensus 348 ~~~~ieLS~EEl~~ll~~~GFeii~e~~i--~~~Y~~d~~sm~~~~ 391 (397)
..+.++.+++.+++++.||+++..+.. ....-...+.|....
T Consensus 181 --~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~~~~~g~e~~~~~~ 224 (235)
T 3lcc_A 181 --PPYKVDVSTFEEVLVPIGFKAVSVEENPHAIPTRKGKEKLGRWK 224 (235)
T ss_dssp --SSCCCCHHHHHHHHGGGTEEEEEEEECTTCCTTTTTSCEEEEEE
T ss_pred --CCccCCHHHHHHHHHHcCCeEEEEEecCCccccccCHHHHhhhh
Confidence 135689999999999999999985533 233334445554443
|
| >2gb4_A Thiopurine S-methyltransferase; 18204406, thiopurine methyltransferase, structural genomics, PSI, protein structure initiative; HET: SAH; 1.25A {Mus musculus} PDB: 3bgi_A* 3bgd_A* 2bzg_A* 2h11_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=8.5e-17 Score=152.44 Aligned_cols=156 Identities=13% Similarity=0.085 Sum_probs=100.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|+++..||++|+.|+|+|+|..|+..|+-.... .+++-. + .+......-.
T Consensus 68 ~~~~vLD~GCG~G~~~~~La~~G~~V~gvD~S~~~i~~a~~~~~~-----~~~~~~-~----------~~~~~~~~~~-- 129 (252)
T 2gb4_A 68 SGLRVFFPLCGKAIEMKWFADRGHTVVGVEISEIGIREFFAEQNL-----SYTEEP-L----------AEIAGAKVFK-- 129 (252)
T ss_dssp CSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTC-----CEEEEE-C----------TTSTTCEEEE--
T ss_pred CCCeEEEeCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHhccc-----cccccc-c----------cccccccccc--
Confidence 567999999999999999999999999999999999876521100 000000 0 0000000000
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCC
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~ 346 (397)
....++.++++|+.++.. ...++||+|+....+. ..++...|++.++++|||||+++-+. +.|.... .++
T Consensus 130 ----~~~~~i~~~~~D~~~l~~--~~~~~FD~V~~~~~l~~l~~~~~~~~l~~~~~~LkpGG~l~l~~-~~~~~~~-~~g 201 (252)
T 2gb4_A 130 ----SSSGSISLYCCSIFDLPR--ANIGKFDRIWDRGALVAINPGDHDRYADIILSLLRKEFQYLVAV-LSYDPTK-HAG 201 (252)
T ss_dssp ----ETTSSEEEEESCTTTGGG--GCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEEEEEEEEEE-EECCTTS-CCC
T ss_pred ----cCCCceEEEECccccCCc--ccCCCEEEEEEhhhhhhCCHHHHHHHHHHHHHHcCCCeEEEEEE-EecCCcc-CCC
Confidence 001248899999988642 1137899999754332 23457789999999999999985211 0121111 111
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 347 EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 347 ~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
+ .+.++.+||.+++.. +|+++..+
T Consensus 202 ~---~~~~~~~el~~~l~~-~f~v~~~~ 225 (252)
T 2gb4_A 202 P---PFYVPSAELKRLFGT-KCSMQCLE 225 (252)
T ss_dssp S---SCCCCHHHHHHHHTT-TEEEEEEE
T ss_pred C---CCCCCHHHHHHHhhC-CeEEEEEe
Confidence 2 345899999999987 69998854
|
| >3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} | Back alignment and structure |
|---|
Probab=99.71 E-value=9.9e-17 Score=144.10 Aligned_cols=158 Identities=17% Similarity=0.100 Sum_probs=110.9
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~ 253 (397)
.+..+...++ ++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++-.+
T Consensus 33 ~~~~~~~~~~-----~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~---------------------- 85 (211)
T 3e23_A 33 TLTKFLGELP-----AGAKILELGCGAGYQAEAMLAAGFDVDATDGSPELAAEASRRL---------------------- 85 (211)
T ss_dssp HHHHHHTTSC-----TTCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHH----------------------
T ss_pred HHHHHHHhcC-----CCCcEEEECCCCCHHHHHHHHcCCeEEEECCCHHHHHHHHHhc----------------------
Confidence 4444444443 4679999999999999999999999999999999997665211
Q ss_pred CcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCC--hhhHHHHHHHHHHhccCCcEEE
Q 015966 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDt--a~Ni~~yi~~I~~~LKPGG~wI 331 (397)
++.+..+|+.++- ..++||+|++...+.. ..++..+++.++++|||||++|
T Consensus 86 -----------------------~~~~~~~d~~~~~----~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~ 138 (211)
T 3e23_A 86 -----------------------GRPVRTMLFHQLD----AIDAYDAVWAHACLLHVPRDELADVLKLIWRALKPGGLFY 138 (211)
T ss_dssp -----------------------TSCCEECCGGGCC----CCSCEEEEEECSCGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred -----------------------CCceEEeeeccCC----CCCcEEEEEecCchhhcCHHHHHHHHHHHHHhcCCCcEEE
Confidence 0345667877653 3589999998764433 3478899999999999999999
Q ss_pred EecCCcchhhhccCCCCCccccCCHHHHHHHHHhCC-CEEEEEe-ecCCCCCCCcccc
Q 015966 332 NLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYG-FEFEKEK-TIETTYTTNPRSM 387 (397)
Q Consensus 332 N~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~G-Feii~e~-~i~~~Y~~d~~sm 387 (397)
-.-|...... ..........++.++++++++++| |+++... .....|....+.+
T Consensus 139 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~l~~aG~f~~~~~~~~~~~~~~~~~~~w 194 (211)
T 3e23_A 139 ASYKSGEGEG--RDKLARYYNYPSEEWLRARYAEAGTWASVAVESSEGKGFDQELAQF 194 (211)
T ss_dssp EEEECCSSCE--ECTTSCEECCCCHHHHHHHHHHHCCCSEEEEEEEEEECTTSCEEEE
T ss_pred EEEcCCCccc--ccccchhccCCCHHHHHHHHHhCCCcEEEEEEeccCCCCCCCCceE
Confidence 5322111000 000111123479999999999999 9999854 4445566554433
|
| >3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.1e-16 Score=140.81 Aligned_cols=138 Identities=12% Similarity=0.144 Sum_probs=102.2
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCC
Q 015966 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p 269 (397)
+.+|||+|||+|+++..|+++|+.|+|+|+|..|+..++-. .
T Consensus 42 ~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~---------------------------------~----- 83 (203)
T 3h2b_A 42 DGVILDVGSGTGRWTGHLASLGHQIEGLEPATRLVELARQT---------------------------------H----- 83 (203)
T ss_dssp CSCEEEETCTTCHHHHHHHHTTCCEEEECCCHHHHHHHHHH---------------------------------C-----
T ss_pred CCeEEEecCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHh---------------------------------C-----
Confidence 56899999999999999999999999999999999766511 0
Q ss_pred CCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCCh--hhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCC
Q 015966 270 ASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 347 (397)
Q Consensus 270 ~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta--~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~ 347 (397)
.++.++.+|+.++. ...++||+|++...+... .++..+++.++++|||||++|-.-+..-.... ....
T Consensus 84 ------~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~-~~~~ 153 (203)
T 3h2b_A 84 ------PSVTFHHGTITDLS---DSPKRWAGLLAWYSLIHMGPGELPDALVALRMAVEDGGGLLMSFFSGPSLEP-MYHP 153 (203)
T ss_dssp ------TTSEEECCCGGGGG---GSCCCEEEEEEESSSTTCCTTTHHHHHHHHHHTEEEEEEEEEEEECCSSCEE-ECCS
T ss_pred ------CCCeEEeCcccccc---cCCCCeEEEEehhhHhcCCHHHHHHHHHHHHHHcCCCcEEEEEEccCCchhh-hhch
Confidence 02577889988753 235899999987655433 47889999999999999999952211100000 0111
Q ss_pred CCccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 348 DEMSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 348 ~~~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
......++.+++++++++.||++++...
T Consensus 154 ~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 181 (203)
T 3h2b_A 154 VATAYRWPLPELAQALETAGFQVTSSHW 181 (203)
T ss_dssp SSCEEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred hhhhccCCHHHHHHHHHHCCCcEEEEEe
Confidence 1123458999999999999999998653
|
| >1ri5_A MRNA capping enzyme; methyltransferase, M7G, messenger RNA CAP, structural genomics, PSI, protein structure initiative; 2.10A {Encephalitozoon cuniculi} SCOP: c.66.1.34 PDB: 1ri2_A* 1ri3_A* 1ri1_A* 1ri4_A 1z3c_A* 2hv9_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=5.1e-17 Score=152.12 Aligned_cols=148 Identities=14% Similarity=0.081 Sum_probs=104.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|+++..+++.|. .|+|+|+|..|+..++-.+...
T Consensus 64 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~--------------------------------- 110 (298)
T 1ri5_A 64 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNM--------------------------------- 110 (298)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTS---------------------------------
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhc---------------------------------
Confidence 567999999999999999999998 8999999999998776322110
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeecc----CChhhHHHHHHHHHHhccCCcEEEEecCCc------
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFI----DTAHNIVEYIEIISRILKDGGVWINLGPLL------ 337 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFI----Dta~Ni~~yi~~I~~~LKPGG~wIN~GPLl------ 337 (397)
....++.++.+|+.++.. ...++||+|++.+.+ ....++..+++.++++|||||++|-..|..
T Consensus 111 -----~~~~~v~~~~~d~~~~~~--~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~ 183 (298)
T 1ri5_A 111 -----KRRFKVFFRAQDSYGRHM--DLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILER 183 (298)
T ss_dssp -----CCSSEEEEEESCTTTSCC--CCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHH
T ss_pred -----CCCccEEEEECCcccccc--CCCCCcCEEEECchhhhhcCCHHHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHH
Confidence 001236788899877521 135789999988654 557788999999999999999999432221
Q ss_pred ----------chhhhc--------cC----------CCCCccccCCHHHHHHHHHhCCCEEEEEeec
Q 015966 338 ----------YHFADL--------YG----------QEDEMSIELSLEDVKRVALHYGFEFEKEKTI 376 (397)
Q Consensus 338 ----------Yh~~d~--------~g----------~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i 376 (397)
|...-. .| .......-++.++++++++++||++++....
T Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~l~~ll~~aGf~~v~~~~~ 250 (298)
T 1ri5_A 184 YKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERKGF 250 (298)
T ss_dssp HHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEEEH
T ss_pred HccCccCCeeEEEEeCccccccccccceEEEEEchhhcCCcccccCHHHHHHHHHHcCCEEEEecCH
Confidence 110000 00 0000012468999999999999999986543
|
| >3e8s_A Putative SAM dependent methyltransferase; NP_744700.1, structural genomics, joint center for structural genom JCSG; HET: SAH; 2.10A {Pseudomonas putida KT2440} | Back alignment and structure |
|---|
Probab=99.70 E-value=4.6e-16 Score=139.10 Aligned_cols=177 Identities=14% Similarity=0.137 Sum_probs=115.7
Q ss_pred hHHHHHHHHHHhcccccC----hhHHh-hchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCC
Q 015966 146 DKVRCIIRNIVRDWAAEG----KTERD-QCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFS 220 (397)
Q Consensus 146 dkv~stL~q~~RDWS~eG----~~ER~-~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S 220 (397)
++++....+.+..|.... ...|. .....+++.+... ++.+|||+|||+|+++..|+++|..|+|+|+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s 83 (227)
T 3e8s_A 11 DALLDSWHQNAQAWIDAVRHGAIESRRQVTDQAILLAILGR-------QPERVLDLGCGEGWLLRALADRGIEAVGVDGD 83 (227)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHTHHHHHHHHHHHT-------CCSEEEEETCTTCHHHHHHHTTTCEEEEEESC
T ss_pred HHHHHHHHhhHHHHHHHhcccccccccccccHHHHHHhhcC-------CCCEEEEeCCCCCHHHHHHHHCCCEEEEEcCC
Confidence 455555566666665421 11111 1122344444432 45799999999999999999999999999999
Q ss_pred HHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCC-CCCCCcc
Q 015966 221 YYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDP-SQVGAWD 299 (397)
Q Consensus 221 ~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~-~~~~~fD 299 (397)
..|+..++-. .+..+..+|+.++...+ ...++||
T Consensus 84 ~~~~~~a~~~---------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~fD 118 (227)
T 3e8s_A 84 RTLVDAARAA---------------------------------------------GAGEVHLASYAQLAEAKVPVGKDYD 118 (227)
T ss_dssp HHHHHHHHHT---------------------------------------------CSSCEEECCHHHHHTTCSCCCCCEE
T ss_pred HHHHHHHHHh---------------------------------------------cccccchhhHHhhcccccccCCCcc
Confidence 9999766511 01345666766652111 1235699
Q ss_pred EEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhc----------c-C---C-CCCccccCCHHHHHHHHH
Q 015966 300 AVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADL----------Y-G---Q-EDEMSIELSLEDVKRVAL 364 (397)
Q Consensus 300 ~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~----------~-g---~-~~~~~ieLS~EEl~~ll~ 364 (397)
+|++.+.+. ..+...+++.++++|||||++|-..|..+..... + + . .+.....+|.++++++++
T Consensus 119 ~v~~~~~l~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 197 (227)
T 3e8s_A 119 LICANFALL-HQDIIELLSAMRTLLVPGGALVIQTLHPWSVADGDYQDGWREESFAGFAGDWQPMPWYFRTLASWLNALD 197 (227)
T ss_dssp EEEEESCCC-SSCCHHHHHHHHHTEEEEEEEEEEECCTTTTCTTCCSCEEEEECCTTSSSCCCCEEEEECCHHHHHHHHH
T ss_pred EEEECchhh-hhhHHHHHHHHHHHhCCCeEEEEEecCccccCccccccccchhhhhccccCcccceEEEecHHHHHHHHH
Confidence 999987776 6778899999999999999999633321111100 0 0 0 011123469999999999
Q ss_pred hCCCEEEEEee
Q 015966 365 HYGFEFEKEKT 375 (397)
Q Consensus 365 ~~GFeii~e~~ 375 (397)
++||++++...
T Consensus 198 ~aGf~~~~~~~ 208 (227)
T 3e8s_A 198 MAGLRLVSLQE 208 (227)
T ss_dssp HTTEEEEEEEC
T ss_pred HcCCeEEEEec
Confidence 99999998543
|
| >2p7i_A Hypothetical protein; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; 1.74A {Pectobacterium atrosepticum SCRI1043} SCOP: c.66.1.41 PDB: 2p7h_A | Back alignment and structure |
|---|
Probab=99.70 E-value=9.3e-17 Score=145.36 Aligned_cols=152 Identities=15% Similarity=0.154 Sum_probs=110.9
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccc
Q 015966 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (397)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~ 249 (397)
.+..+++.|.... ++.+|||+|||+|+++..|+++|.+|+|+|+|..|+..++-..
T Consensus 29 ~~~~~~~~l~~~~------~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~------------------ 84 (250)
T 2p7i_A 29 MHPFMVRAFTPFF------RPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRL------------------ 84 (250)
T ss_dssp HHHHHHHHHGGGC------CSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHS------------------
T ss_pred HHHHHHHHHHhhc------CCCcEEEECCCCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhh------------------
Confidence 3455666665543 3568999999999999999999999999999999997665110
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHH-HhccCCc
Q 015966 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIIS-RILKDGG 328 (397)
Q Consensus 250 Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~-~~LKPGG 328 (397)
+ .++.++.+|+.++. .+++||+|++...+...++....|+.++ ++|||||
T Consensus 85 ---------------~----------~~v~~~~~d~~~~~----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~~LkpgG 135 (250)
T 2p7i_A 85 ---------------K----------DGITYIHSRFEDAQ----LPRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGG 135 (250)
T ss_dssp ---------------C----------SCEEEEESCGGGCC----CSSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEE
T ss_pred ---------------h----------CCeEEEEccHHHcC----cCCcccEEEEhhHHHhhcCHHHHHHHHHHHhcCCCC
Confidence 0 02678889988763 2578999999877666667789999999 9999999
Q ss_pred EEEEecCCcchhhhc----cCC------------CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 329 VWINLGPLLYHFADL----YGQ------------EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 329 ~wIN~GPLlYh~~d~----~g~------------~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
+++-..|........ .+. .......++.++++++++++||++++..
T Consensus 136 ~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 197 (250)
T 2p7i_A 136 RLFLVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRS 197 (250)
T ss_dssp EEEEEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEcCChHHHHHHHHHHcCccccchhcccccccccccccCCHHHHHHHHHHCCCeEEEEe
Confidence 999644432111000 000 0011234799999999999999999865
|
| >4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.8e-16 Score=147.91 Aligned_cols=155 Identities=13% Similarity=0.124 Sum_probs=110.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++-.+...
T Consensus 68 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~---------------------------------- 113 (285)
T 4htf_A 68 QKLRVLDAGGGEGQTAIKMAERGHQVILCDLSAQMIDRAKQAAEAK---------------------------------- 113 (285)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHC-----------------------------------
T ss_pred CCCEEEEeCCcchHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc----------------------------------
Confidence 3579999999999999999999999999999999998776332110
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCc-----------
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLL----------- 337 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLl----------- 337 (397)
....++.++.+|+.++.. ...++||+|++...+...++...+++.++++|||||++|-..+..
T Consensus 114 ----~~~~~v~~~~~d~~~~~~--~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 187 (285)
T 4htf_A 114 ----GVSDNMQFIHCAAQDVAS--HLETPVDLILFHAVLEWVADPRSVLQTLWSVLRPGGVLSLMFYNAHGLLMHNMVAG 187 (285)
T ss_dssp ----CCGGGEEEEESCGGGTGG--GCSSCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEEBHHHHHHHHHHTT
T ss_pred ----CCCcceEEEEcCHHHhhh--hcCCCceEEEECchhhcccCHHHHHHHHHHHcCCCeEEEEEEeCCchHHHHHHHhc
Confidence 011247889999987642 235899999998766666677899999999999999999532210
Q ss_pred -chh--hhccC---CCCCccccCCHHHHHHHHHhCCCEEEEEeecC--CCCCCC
Q 015966 338 -YHF--ADLYG---QEDEMSIELSLEDVKRVALHYGFEFEKEKTIE--TTYTTN 383 (397)
Q Consensus 338 -Yh~--~d~~g---~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~--~~Y~~d 383 (397)
|.+ ..... ........++.++++++++++||++++...+. ..|..+
T Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~v~~~~~~~~~~~~~~~ 241 (285)
T 4htf_A 188 NFDYVQAGMPKKKKRTLSPDYPRDPTQVYLWLEEAGWQIMGKTGVRVFHDYLRE 241 (285)
T ss_dssp CHHHHHTTCCCC----CCCSCCBCHHHHHHHHHHTTCEEEEEEEESSSGGGCSS
T ss_pred CHHHHhhhccccccccCCCCCCCCHHHHHHHHHHCCCceeeeeeEEEeeecccc
Confidence 000 00000 01111235799999999999999999876443 344443
|
| >2kw5_A SLR1183 protein; structural genomics, northeast structural genomics consortium (NESG), PSI-2, protein structure initiative, unknown function; NMR {Synechocystis} PDB: 3mer_A | Back alignment and structure |
|---|
Probab=99.68 E-value=5.8e-16 Score=137.87 Aligned_cols=138 Identities=16% Similarity=0.172 Sum_probs=101.3
Q ss_pred eEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCC
Q 015966 192 ACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPAS 271 (397)
Q Consensus 192 rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~ 271 (397)
+|||+|||+|+++..|+++|+.|+|+|+|..|+..++-.+...
T Consensus 32 ~vLdiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~------------------------------------- 74 (202)
T 2kw5_A 32 KILCLAEGEGRNACFLASLGYEVTAVDQSSVGLAKAKQLAQEK------------------------------------- 74 (202)
T ss_dssp EEEECCCSCTHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHH-------------------------------------
T ss_pred CEEEECCCCCHhHHHHHhCCCeEEEEECCHHHHHHHHHHHHhc-------------------------------------
Confidence 9999999999999999999999999999999998776322100
Q ss_pred CCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCCcc
Q 015966 272 AGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMS 351 (397)
Q Consensus 272 ~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ 351 (397)
+.++.+..+|+.++. ...++||+|++.+..-...+...+++.+.++|||||++|-..+.........+.+....
T Consensus 75 ---~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~~~~~ 148 (202)
T 2kw5_A 75 ---GVKITTVQSNLADFD---IVADAWEGIVSIFCHLPSSLRQQLYPKVYQGLKPGGVFILEGFAPEQLQYNTGGPKDLD 148 (202)
T ss_dssp ---TCCEEEECCBTTTBS---CCTTTCSEEEEECCCCCHHHHHHHHHHHHTTCCSSEEEEEEEECTTTGGGTSCCSSSGG
T ss_pred ---CCceEEEEcChhhcC---CCcCCccEEEEEhhcCCHHHHHHHHHHHHHhcCCCcEEEEEEeccccccCCCCCCCcce
Confidence 002677888887752 23578999998765445677889999999999999999953322111110011122224
Q ss_pred ccCCHHHHHHHHHhCCCEEEEEe
Q 015966 352 IELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 352 ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
..++.++++++++ ||+++...
T Consensus 149 ~~~~~~~l~~~l~--Gf~v~~~~ 169 (202)
T 2kw5_A 149 LLPKLETLQSELP--SLNWLIAN 169 (202)
T ss_dssp GCCCHHHHHHHCS--SSCEEEEE
T ss_pred eecCHHHHHHHhc--CceEEEEE
Confidence 5689999999998 99998843
|
| >3ou2_A SAM-dependent methyltransferase; O-methyltransferase, SAH; HET: SAH; 1.50A {Streptomyces luridus} PDB: 3ou6_A* 3ou7_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=4.1e-16 Score=139.22 Aligned_cols=139 Identities=14% Similarity=0.094 Sum_probs=99.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++- + .
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~--~----------------------------~------- 88 (218)
T 3ou2_A 46 IRGDVLELASGTGYWTRHLSGLADRVTALDGSAEMIAEAGR--H----------------------------G------- 88 (218)
T ss_dssp SCSEEEEESCTTSHHHHHHHHHSSEEEEEESCHHHHHHHGG--G----------------------------C-------
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHh--c----------------------------C-------
Confidence 45699999999999999999999999999999999976651 0 0
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhh--HHHHHHHHHHhccCCcEEEEec--CCc-ch---h
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN--IVEYIEIISRILKDGGVWINLG--PLL-YH---F 340 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N--i~~yi~~I~~~LKPGG~wIN~G--PLl-Yh---~ 340 (397)
..++.++.+|+.++. ..++||+|++...+...++ +..+++.++++|||||+++-.. +.. +. +
T Consensus 89 ------~~~~~~~~~d~~~~~----~~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~ 158 (218)
T 3ou2_A 89 ------LDNVEFRQQDLFDWT----PDRQWDAVFFAHWLAHVPDDRFEAFWESVRSAVAPGGVVEFVDVTDHERRLEQQD 158 (218)
T ss_dssp ------CTTEEEEECCTTSCC----CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEECCCC-------
T ss_pred ------CCCeEEEecccccCC----CCCceeEEEEechhhcCCHHHHHHHHHHHHHHcCCCeEEEEEeCCCCccccchhh
Confidence 012678899998762 2589999998865543333 6899999999999999998532 210 00 0
Q ss_pred hhc----cC--CCCCccc-----cCCHHHHHHHHHhCCCEEEEEe
Q 015966 341 ADL----YG--QEDEMSI-----ELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 341 ~d~----~g--~~~~~~i-----eLS~EEl~~ll~~~GFeii~e~ 374 (397)
... .. ......+ .++.+++.++++++||+++..+
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~ 203 (218)
T 3ou2_A 159 DSEPEVAVRRTLQDGRSFRIVKVFRSPAELTERLTALGWSCSVDE 203 (218)
T ss_dssp -----CEEEEECTTSCEEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred hcccccceeeecCCcchhhHhhcCCCHHHHHHHHHHCCCEEEeee
Confidence 000 00 0000111 3699999999999999977654
|
| >3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.68 E-value=5.9e-16 Score=142.72 Aligned_cols=152 Identities=14% Similarity=0.208 Sum_probs=108.5
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCC
Q 015966 175 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (397)
Q Consensus 175 l~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~ 253 (397)
...|.+.++. .++.+|||+|||+|+++..|+++|. .|+|+|+|..|+..++-.+.
T Consensus 33 ~~~l~~~~~~---~~~~~vLD~GcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~--------------------- 88 (253)
T 3g5l_A 33 WHELKKMLPD---FNQKTVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTT--------------------- 88 (253)
T ss_dssp HHHHHTTCCC---CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHCC---------------------
T ss_pred HHHHHHhhhc---cCCCEEEEECCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHhhc---------------------
Confidence 3445555553 2678999999999999999999999 99999999999987652110
Q ss_pred CcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe
Q 015966 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 333 (397)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~ 333 (397)
..++.++.+|+.++- ...++||+|++...+....++..+++.++++|||||++|-.
T Consensus 89 ---------------------~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~ 144 (253)
T 3g5l_A 89 ---------------------SPVVCYEQKAIEDIA---IEPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFS 144 (253)
T ss_dssp ---------------------CTTEEEEECCGGGCC---CCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEE
T ss_pred ---------------------cCCeEEEEcchhhCC---CCCCCeEEEEEchhhhhhhhHHHHHHHHHHHcCCCcEEEEE
Confidence 013678899987752 23589999999876655567889999999999999999953
Q ss_pred --cCCc-------chhhhc-----------cCCC---------CCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 334 --GPLL-------YHFADL-----------YGQE---------DEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 334 --GPLl-------Yh~~d~-----------~g~~---------~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
.|.. |.+... +... ....+..|.++++++++++||++++..
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~ 214 (253)
T 3g5l_A 145 VEHPVFTADGRQDWYTDETGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVTTYIQTLLKNGFQINSVI 214 (253)
T ss_dssp EECHHHHSSSSCSCEECSSCCEEEEEECCTTCCCEEEEEETTEEEEEECCCHHHHHHHHHHTTEEEEEEE
T ss_pred eCCCccccCccccceeccCCceEEEEeccccccceEEEeeccccCccEecCHHHHHHHHHHcCCeeeeee
Confidence 2211 111100 0000 001122399999999999999998854
|
| >4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=5.4e-16 Score=147.64 Aligned_cols=142 Identities=18% Similarity=0.168 Sum_probs=99.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCcccccc
Q 015966 189 SPPACLVPGAGLGRLALEISHL----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~----Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~i 264 (397)
++.+|||+|||+|+++..||++ |++|+|+|+|..||..|+-.+...
T Consensus 70 ~~~~vLDlGcGtG~~~~~la~~~~~~~~~v~gvD~s~~ml~~A~~~~~~~------------------------------ 119 (261)
T 4gek_A 70 PGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAY------------------------------ 119 (261)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTCCSSSCEEEEEESCHHHHHHHHHHHHTS------------------------------
T ss_pred CCCEEEEEeCCCCHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHHHHhh------------------------------
Confidence 6779999999999999999986 779999999999998877322110
Q ss_pred CCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCCcEEEEecCCc-----
Q 015966 265 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLL----- 337 (397)
Q Consensus 265 PDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPGG~wIN~GPLl----- 337 (397)
....++.++.||+.++- .+.||+|++.+.+. ...+...+|+.|+++|||||++|..-+..
T Consensus 120 --------~~~~~v~~~~~D~~~~~-----~~~~d~v~~~~~l~~~~~~~~~~~l~~i~~~LkpGG~lii~e~~~~~~~~ 186 (261)
T 4gek_A 120 --------KAPTPVDVIEGDIRDIA-----IENASMVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEKFSFEDAK 186 (261)
T ss_dssp --------CCSSCEEEEESCTTTCC-----CCSEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCSSHH
T ss_pred --------ccCceEEEeeccccccc-----ccccccceeeeeeeecCchhHhHHHHHHHHHcCCCcEEEEEeccCCCCHH
Confidence 01124789999998862 25699999876332 23456789999999999999999532211
Q ss_pred --------ch-hhhccCCCC-C----------ccccCCHHHHHHHHHhCCCEEEEE
Q 015966 338 --------YH-FADLYGQED-E----------MSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 338 --------Yh-~~d~~g~~~-~----------~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
|+ |....|..+ + ....+|.++++++|+++||+.++.
T Consensus 187 ~~~~~~~~~~~~~~~~g~s~~ei~~~~~~l~~~~~~~s~~~~~~~L~~AGF~~ve~ 242 (261)
T 4gek_A 187 VGELLFNMHHDFKRANGYSELEISQKRSMLENVMLTDSVETHKARLHKAGFEHSEL 242 (261)
T ss_dssp HHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCBCHHHHHHHHHHHTCSEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcccccCCCHHHHHHHHHHcCCCeEEE
Confidence 11 110011000 0 012368999999999999987764
|
| >3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.68 E-value=4.5e-16 Score=143.01 Aligned_cols=151 Identities=17% Similarity=0.167 Sum_probs=106.7
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
.+.+.+.+.++.. .++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++-
T Consensus 27 ~~~~~~~~~l~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~----------------------- 81 (240)
T 3dli_A 27 LVKARLRRYIPYF--KGCRRVLDIGCGRGEFLELCKEEGIESIGVDINEDMIKFCEG----------------------- 81 (240)
T ss_dssp HHHHHHGGGGGGT--TTCSCEEEETCTTTHHHHHHHHHTCCEEEECSCHHHHHHHHT-----------------------
T ss_pred HHHHHHHHHHhhh--cCCCeEEEEeCCCCHHHHHHHhCCCcEEEEECCHHHHHHHHh-----------------------
Confidence 3555555544432 256799999999999999999999999999999999875541
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCCh--hhHHHHHHHHHHhccCCcEE
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVW 330 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta--~Ni~~yi~~I~~~LKPGG~w 330 (397)
++.++.+|+.+... +..+++||+|++...+... +++..+++.++++|||||++
T Consensus 82 ------------------------~~~~~~~d~~~~~~-~~~~~~fD~i~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l 136 (240)
T 3dli_A 82 ------------------------KFNVVKSDAIEYLK-SLPDKYLDGVMISHFVEHLDPERLFELLSLCYSKMKYSSYI 136 (240)
T ss_dssp ------------------------TSEEECSCHHHHHH-TSCTTCBSEEEEESCGGGSCGGGHHHHHHHHHHHBCTTCCE
T ss_pred ------------------------hcceeeccHHHHhh-hcCCCCeeEEEECCchhhCCcHHHHHHHHHHHHHcCCCcEE
Confidence 03446677766421 1235899999988655433 36789999999999999999
Q ss_pred EEecCCcch---hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 331 INLGPLLYH---FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 331 IN~GPLlYh---~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
|-..|.... +...+ ..+.....++.+++.++++++||+++...
T Consensus 137 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 182 (240)
T 3dli_A 137 VIESPNPTSLYSLINFY-IDPTHKKPVHPETLKFILEYLGFRDVKIE 182 (240)
T ss_dssp EEEEECTTSHHHHHHHT-TSTTCCSCCCHHHHHHHHHHHTCEEEEEE
T ss_pred EEEeCCcchhHHHHHHh-cCccccccCCHHHHHHHHHHCCCeEEEEE
Confidence 953332111 11111 11222345899999999999999998855
|
| >2i62_A Nicotinamide N-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAH; 1.80A {Mus musculus} PDB: 2iip_A* 3rod_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=2.8e-16 Score=144.71 Aligned_cols=182 Identities=14% Similarity=0.194 Sum_probs=111.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|+++..+++.|+ .|+|+|+|..|+..++-.+.... ..+..-|+....++........ ++.
T Consensus 56 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~-----~~~ 128 (265)
T 2i62_A 56 KGELLIDIGSGPTIYQLLSACESFTEIIVSDYTDQNLWELQKWLKKEP--GAFDWSPVVTYVCDLEGNRMKG-----PEK 128 (265)
T ss_dssp CEEEEEEESCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHTTCT--TCCCCHHHHHHHHHHTTTCSCH-----HHH
T ss_pred CCCEEEEECCCccHHHHHHhhcccCeEEEecCCHHHHHHHHHHHhcCC--ccccchhhhhhhhcccccccch-----HHH
Confidence 567999999999999999999999 99999999999987764332110 0000000000000000000000 000
Q ss_pred CCCCCCCCCcc-eeEecccccccCC-CCCCCCccEEEEeeccC----ChhhHHHHHHHHHHhccCCcEEEEecCCcchhh
Q 015966 268 HPASAGITEGF-SMCGGDFVEVYSD-PSQVGAWDAVVTCFFID----TAHNIVEYIEIISRILKDGGVWINLGPLLYHFA 341 (397)
Q Consensus 268 ~p~~~~~~~~l-s~~~GDF~ely~~-~~~~~~fD~VvT~FFID----ta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~ 341 (397)
. .....++ .+..+|+.+.... +...++||+|++.+.+. ...++...|+.++++|||||++|-..++--.+.
T Consensus 129 ~---~~l~~~v~~~~~~d~~~~~~~~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~ 205 (265)
T 2i62_A 129 E---EKLRRAIKQVLKCDVTQSQPLGGVSLPPADCLLSTLCLDAACPDLPAYRTALRNLGSLLKPGGFLVMVDALKSSYY 205 (265)
T ss_dssp H---HHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTEEEEEEEEEEEESSCCEE
T ss_pred H---HHhhhhheeEEEeeeccCCCCCccccCCccEEEEhhhhhhhcCChHHHHHHHHHHHhhCCCCcEEEEEecCCCceE
Confidence 0 0000125 7788888774321 11227899999987766 667889999999999999999996443321111
Q ss_pred hccCCCCCccccCCHHHHHHHHHhCCCEEEEEeecCCCCC
Q 015966 342 DLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYT 381 (397)
Q Consensus 342 d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~~~Y~ 381 (397)
.. +........++.+++.++++++||++++.......|.
T Consensus 206 ~~-~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~~~~~~ 244 (265)
T 2i62_A 206 MI-GEQKFSSLPLGWETVRDAVEEAGYTIEQFEVISQNYS 244 (265)
T ss_dssp EE-TTEEEECCCCCHHHHHHHHHHTTCEEEEEEEECCCCC
T ss_pred Ec-CCccccccccCHHHHHHHHHHCCCEEEEEEEecccCC
Confidence 11 1010013457999999999999999998765544443
|
| >2a14_A Indolethylamine N-methyltransferase; SGC,INMT, structural genomics, structural genomics consortium; HET: SAH; 1.70A {Homo sapiens} SCOP: c.66.1.15 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.8e-16 Score=147.80 Aligned_cols=192 Identities=16% Similarity=0.127 Sum_probs=113.3
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCcccccccccccc
Q 015966 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (397)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~S 250 (397)
..++..+.+.+... ..++.+|||+|||+|.++..+++.|+ .|+|+|+|..|+..|+--++.. +..+..-|.+...+
T Consensus 39 ~~~~~~~~~~~~~~-~~~g~~vLDiGCG~G~~~~~~~~~~~~~v~g~D~s~~~l~~a~~~~~~~--~~~~d~s~~~~~~~ 115 (263)
T 2a14_A 39 KFNLECLHKTFGPG-GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKE--PGAYDWTPAVKFAC 115 (263)
T ss_dssp HHHHHHHHHHHSTT-SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTC--TTCCCCHHHHHHHH
T ss_pred HHHHHHHHHHhcCC-CCCCceEEEeCCCccHHHHHHHHhhhcceeeccccHHHHHHHHHHHhcC--CCcccchHHHHHHH
Confidence 34556666665321 23677999999999999999999998 5999999999999877433211 01111111110000
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcce-eEecccccccCC-CCCCCCccEEEEeeccCC----hhhHHHHHHHHHHhc
Q 015966 251 NSLSDSDQLRPVSIPDIHPASAGITEGFS-MCGGDFVEVYSD-PSQVGAWDAVVTCFFIDT----AHNIVEYIEIISRIL 324 (397)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~ls-~~~GDF~ely~~-~~~~~~fD~VvT~FFIDt----a~Ni~~yi~~I~~~L 324 (397)
+...... .+++.. .....++. ++.+|+.+.... +...++||+|++.+.+.. .++....++.|+++|
T Consensus 116 ~~~~~~~-----~~~~~~---~~~~~~i~~~~~~D~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~~~~l~~i~r~L 187 (263)
T 2a14_A 116 ELEGNSG-----RWEEKE---EKLRAAVKRVLKCDVHLGNPLAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLASLL 187 (263)
T ss_dssp HHTTCGG-----GHHHHH---HHHHHHEEEEEECCTTSSSTTTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHHTTE
T ss_pred hcCCCCc-----chhhHH---HHHHhhhheEEeccccCCCCCCccccCCCCEeeehHHHHHhcCCHHHHHHHHHHHHHHc
Confidence 0000000 000000 00001132 778888763211 112468999999876543 367789999999999
Q ss_pred cCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 325 KDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 325 KPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
||||++|-.+++--.+.. .|........++.+++++++++.||++++.+.
T Consensus 188 KPGG~li~~~~~~~~~~~-~g~~~~~~~~~~~~~l~~~l~~aGF~i~~~~~ 237 (263)
T 2a14_A 188 KPGGHLVTTVTLRLPSYM-VGKREFSCVALEKGEVEQAVLDAGFDIEQLLH 237 (263)
T ss_dssp EEEEEEEEEEESSCCEEE-ETTEEEECCCCCHHHHHHHHHHTTEEEEEEEE
T ss_pred CCCcEEEEEEeecCccce-eCCeEeeccccCHHHHHHHHHHCCCEEEEEee
Confidence 999999975433110000 01100012357999999999999999988653
|
| >3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.2e-15 Score=137.08 Aligned_cols=140 Identities=11% Similarity=-0.025 Sum_probs=104.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|+++..|++++ ..|+|+|+|..|+..++-.+... .+
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~----------------------------~~- 87 (219)
T 3dh0_A 37 EGMTVLDVGTGAGFYLPYLSKMVGEKGKVYAIDVQEEMVNYAWEKVNKL----------------------------GL- 87 (219)
T ss_dssp TTCEEEESSCTTCTTHHHHHHHHTTTCEEEEEESCHHHHHHHHHHHHHH----------------------------TC-
T ss_pred CCCEEEEEecCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHc----------------------------CC-
Confidence 56799999999999999999997 89999999999998776332110 00
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccC
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g 345 (397)
.++.++.+|+.++. ...++||+|++...+....+...+++.++++|||||++|-..+..... ..
T Consensus 88 ----------~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~--~~- 151 (219)
T 3dh0_A 88 ----------KNVEVLKSEENKIP---LPDNTVDFIFMAFTFHELSEPLKFLEELKRVAKPFAYLAIIDWKKEER--DK- 151 (219)
T ss_dssp ----------TTEEEEECBTTBCS---SCSSCEEEEEEESCGGGCSSHHHHHHHHHHHEEEEEEEEEEEECSSCC--SS-
T ss_pred ----------CcEEEEecccccCC---CCCCCeeEEEeehhhhhcCCHHHHHHHHHHHhCCCeEEEEEEeccccc--cc-
Confidence 13678889987752 235789999998766655678899999999999999999532211110 00
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 346 QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 346 ~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
.+.....++.+++++++++.||++++..
T Consensus 152 -~~~~~~~~~~~~~~~~l~~~Gf~~~~~~ 179 (219)
T 3dh0_A 152 -GPPPEEVYSEWEVGLILEDAGIRVGRVV 179 (219)
T ss_dssp -SCCGGGSCCHHHHHHHHHHTTCEEEEEE
T ss_pred -CCchhcccCHHHHHHHHHHCCCEEEEEE
Confidence 1112345899999999999999998854
|
| >3pfg_A N-methyltransferase; N,N-dimethyltransferase, SAM binding, DTDP-linked sugar BIND transferase; HET: SAM TLO; 1.35A {Streptomyces fradiae} PDB: 3pfh_A* 3px3_A* 3px2_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=8e-16 Score=142.90 Aligned_cols=107 Identities=15% Similarity=0.087 Sum_probs=85.7
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
.+++.|.+.++ ++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++-.+
T Consensus 39 ~~~~~l~~~~~-----~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~--------------------- 92 (263)
T 3pfg_A 39 DLAALVRRHSP-----KAASLLDVACGTGMHLRHLADSFGTVEGLELSADMLAIARRRN--------------------- 92 (263)
T ss_dssp HHHHHHHHHCT-----TCCEEEEETCTTSHHHHHHTTTSSEEEEEESCHHHHHHHHHHC---------------------
T ss_pred HHHHHHHhhCC-----CCCcEEEeCCcCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhC---------------------
Confidence 46666666654 4579999999999999999999999999999999998665110
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-c---cCChhhHHHHHHHHHHhccCCc
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-F---IDTAHNIVEYIEIISRILKDGG 328 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-F---IDta~Ni~~yi~~I~~~LKPGG 328 (397)
.++.++.+|+.++.. .++||+|++.+ . +.+..++..+|+.++++|||||
T Consensus 93 -----------------------~~~~~~~~d~~~~~~----~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG 145 (263)
T 3pfg_A 93 -----------------------PDAVLHHGDMRDFSL----GRRFSAVTCMFSSIGHLAGQAELDAALERFAAHVLPDG 145 (263)
T ss_dssp -----------------------TTSEEEECCTTTCCC----SCCEEEEEECTTGGGGSCHHHHHHHHHHHHHHTEEEEE
T ss_pred -----------------------CCCEEEECChHHCCc----cCCcCEEEEcCchhhhcCCHHHHHHHHHHHHHhcCCCc
Confidence 026778899887532 58999999875 3 4455678899999999999999
Q ss_pred EEEE
Q 015966 329 VWIN 332 (397)
Q Consensus 329 ~wIN 332 (397)
++|-
T Consensus 146 ~l~i 149 (263)
T 3pfg_A 146 VVVV 149 (263)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9994
|
| >3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} | Back alignment and structure |
|---|
Probab=99.66 E-value=2.1e-15 Score=135.76 Aligned_cols=152 Identities=21% Similarity=0.235 Sum_probs=107.0
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccc
Q 015966 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (397)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~ 249 (397)
.|..+++.+... ++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++-.+
T Consensus 33 ~~~~~l~~~~~~-------~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~------------------ 87 (220)
T 3hnr_A 33 HYEDILEDVVNK-------SFGNVLEFGVGTGNLTNKLLLAGRTVYGIEPSREMRMIAKEKL------------------ 87 (220)
T ss_dssp THHHHHHHHHHT-------CCSEEEEECCTTSHHHHHHHHTTCEEEEECSCHHHHHHHHHHS------------------
T ss_pred HHHHHHHHhhcc-------CCCeEEEeCCCCCHHHHHHHhCCCeEEEEeCCHHHHHHHHHhC------------------
Confidence 345566666532 4679999999999999999999999999999999997665211
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhH--HHHHHHHHHhccCC
Q 015966 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNI--VEYIEIISRILKDG 327 (397)
Q Consensus 250 Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni--~~yi~~I~~~LKPG 327 (397)
+ .++.++.+|+.++.. . ++||+|++...+....+. ..+|+.++++||||
T Consensus 88 ---------------~----------~~~~~~~~d~~~~~~---~-~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkpg 138 (220)
T 3hnr_A 88 ---------------P----------KEFSITEGDFLSFEV---P-TSIDTIVSTYAFHHLTDDEKNVAIAKYSQLLNKG 138 (220)
T ss_dssp ---------------C----------TTCCEESCCSSSCCC---C-SCCSEEEEESCGGGSCHHHHHHHHHHHHHHSCTT
T ss_pred ---------------C----------CceEEEeCChhhcCC---C-CCeEEEEECcchhcCChHHHHHHHHHHHHhcCCC
Confidence 0 126778899887532 2 899999998755544444 34999999999999
Q ss_pred cEEEEecCCcchhhh---------ccCC-----CCCccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 328 GVWINLGPLLYHFAD---------LYGQ-----EDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 328 G~wIN~GPLlYh~~d---------~~g~-----~~~~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
|++|-..|..-.... ..+- ......-.+.++++++++++||+++....
T Consensus 139 G~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~ 200 (220)
T 3hnr_A 139 GKIVFADTIFADQDAYDKTVEAAKQRGFHQLANDLQTEYYTRIPVMQTIFENNGFHVTFTRL 200 (220)
T ss_dssp CEEEEEEECBSSHHHHHHHHHHHHHTTCHHHHHHHHHSCCCBHHHHHHHHHHTTEEEEEEEC
T ss_pred CEEEEEeccccChHHHHHHHHHHHhCCCccchhhcchhhcCCHHHHHHHHHHCCCEEEEeec
Confidence 999964333211000 0000 00011335899999999999999988653
|
| >1y8c_A S-adenosylmethionine-dependent methyltransferase; structural genomics, protein structure initiative, PSI; 2.50A {Clostridium acetobutylicum} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.4e-15 Score=135.33 Aligned_cols=116 Identities=16% Similarity=0.146 Sum_probs=85.8
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
..+.+.+.+.+.... .++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++-.+...
T Consensus 21 ~~~~~~~~~~l~~~~-~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~s~~~~~~a~~~~~~~----------------- 82 (246)
T 1y8c_A 21 KKWSDFIIEKCVENN-LVFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQ----------------- 82 (246)
T ss_dssp HHHHHHHHHHHHTTT-CCTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHHHHHHhC-CCCCeEEEeCCCCCHHHHHHHHCCCcEEEEECCHHHHHHHHHHHhhc-----------------
Confidence 334444444433211 15679999999999999999999999999999999998776322100
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-c---cCChhhHHHHHHHHHHhccCC
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-F---IDTAHNIVEYIEIISRILKDG 327 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-F---IDta~Ni~~yi~~I~~~LKPG 327 (397)
+.++.++.+|+.++.. .++||+|++.. . +.+..++...++.++++||||
T Consensus 83 -----------------------~~~~~~~~~d~~~~~~----~~~fD~v~~~~~~l~~~~~~~~~~~~l~~~~~~L~pg 135 (246)
T 1y8c_A 83 -----------------------GLKPRLACQDISNLNI----NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEG 135 (246)
T ss_dssp -----------------------TCCCEEECCCGGGCCC----SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEE
T ss_pred -----------------------CCCeEEEecccccCCc----cCCceEEEEcCccccccCCHHHHHHHHHHHHHhcCCC
Confidence 0026778899877532 27899999876 3 444578899999999999999
Q ss_pred cEEEE
Q 015966 328 GVWIN 332 (397)
Q Consensus 328 G~wIN 332 (397)
|++|-
T Consensus 136 G~l~~ 140 (246)
T 1y8c_A 136 GVFIF 140 (246)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 99984
|
| >1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.7e-15 Score=139.34 Aligned_cols=158 Identities=16% Similarity=0.140 Sum_probs=111.0
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccc
Q 015966 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 248 (397)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~ 248 (397)
.+...++.|.+.++. .++.+|||+|||+|.++..||++ |..|+|+|+|..|+..++-.....
T Consensus 20 ~~~~~~~~l~~~~~~---~~~~~VLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~l~~a~~~~~~~-------------- 82 (256)
T 1nkv_A 20 FTEEKYATLGRVLRM---KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRAEEL-------------- 82 (256)
T ss_dssp CCHHHHHHHHHHTCC---CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHHHHT--------------
T ss_pred CCHHHHHHHHHhcCC---CCCCEEEEECCCCCHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhc--------------
Confidence 344566777666642 26779999999999999999987 889999999999998776322100
Q ss_pred ccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCc
Q 015966 249 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGG 328 (397)
Q Consensus 249 ~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG 328 (397)
....++.+..+|+.++. . .++||+|++...+....+...+|+.++++|||||
T Consensus 83 ------------------------~~~~~v~~~~~d~~~~~---~-~~~fD~V~~~~~~~~~~~~~~~l~~~~r~LkpgG 134 (256)
T 1nkv_A 83 ------------------------GVSERVHFIHNDAAGYV---A-NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGG 134 (256)
T ss_dssp ------------------------TCTTTEEEEESCCTTCC---C-SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEE
T ss_pred ------------------------CCCcceEEEECChHhCC---c-CCCCCEEEECCChHhcCCHHHHHHHHHHHcCCCe
Confidence 01124788999987752 2 5789999987554444467899999999999999
Q ss_pred EEEEecCCcc------hhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 329 VWINLGPLLY------HFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 329 ~wIN~GPLlY------h~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
+++-..|..- .+..... .......++.+++.++++++||++++.
T Consensus 135 ~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~aGf~~~~~ 184 (256)
T 1nkv_A 135 IMLIGEPYWRQLPATEEIAQACG-VSSTSDFLTLPGLVGAFDDLGYDVVEM 184 (256)
T ss_dssp EEEEEEEEETTCCSSHHHHHTTT-CSCGGGSCCHHHHHHHHHTTTBCCCEE
T ss_pred EEEEecCcccCCCChHHHHHHHh-cccccccCCHHHHHHHHHHCCCeeEEE
Confidence 9995433210 0000000 011123579999999999999998764
|
| >3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=3.3e-15 Score=137.30 Aligned_cols=144 Identities=13% Similarity=0.115 Sum_probs=104.6
Q ss_pred CCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 188 ESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 188 ~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
.++.+|||+|||+|.++..|+++ |..|+|+|+|..|+..++-... .
T Consensus 54 ~~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~---~------------------------------ 100 (266)
T 3ujc_A 54 NENSKVLDIGSGLGGGCMYINEKYGAHTHGIDICSNIVNMANERVS---G------------------------------ 100 (266)
T ss_dssp CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHTCC---S------------------------------
T ss_pred CCCCEEEEECCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhh---c------------------------------
Confidence 36779999999999999999998 9999999999999987652110 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCCh--hhHHHHHHHHHHhccCCcEEEEecCCcc---hhh
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVWINLGPLLY---HFA 341 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta--~Ni~~yi~~I~~~LKPGG~wIN~GPLlY---h~~ 341 (397)
..++.+..+|+.++. ...++||+|++...+... .+...+++.++++|||||+++-..+..- .+.
T Consensus 101 --------~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~ 169 (266)
T 3ujc_A 101 --------NNKIIFEANDILTKE---FPENNFDLIYSRDAILALSLENKNKLFQKCYKWLKPTGTLLITDYCATEKENWD 169 (266)
T ss_dssp --------CTTEEEEECCTTTCC---CCTTCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEESCGGGCC
T ss_pred --------CCCeEEEECccccCC---CCCCcEEEEeHHHHHHhcChHHHHHHHHHHHHHcCCCCEEEEEEeccCCcccch
Confidence 013778899987752 236899999998665554 7889999999999999999995332110 000
Q ss_pred hccC--CCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 342 DLYG--QEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 342 d~~g--~~~~~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
.... ..+.....++.+++.+++++.||++++...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~ 205 (266)
T 3ujc_A 170 DEFKEYVKQRKYTLITVEEYADILTACNFKNVVSKD 205 (266)
T ss_dssp HHHHHHHHHHTCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred HHHHHHHhcCCCCCCCHHHHHHHHHHcCCeEEEEEe
Confidence 0000 000011247999999999999999988653
|
| >3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.63 E-value=3.8e-15 Score=134.17 Aligned_cols=149 Identities=13% Similarity=0.162 Sum_probs=103.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++..+... .+++
T Consensus 30 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~----------------------------~~~~-- 79 (235)
T 3sm3_A 30 EDDEILDIGCGSGKISLELASKGYSVTGIDINSEAIRLAETAARSP----------------------------GLNQ-- 79 (235)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHTTCC----------------------------SCCS--
T ss_pred CCCeEEEECCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHhc----------------------------CCcc--
Confidence 5679999999999999999999999999999999998776332110 0000
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeecc---CChhhHHHHHHHHHHhccCCcEEEEecCCc-ch---hh
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFI---DTAHNIVEYIEIISRILKDGGVWINLGPLL-YH---FA 341 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFI---Dta~Ni~~yi~~I~~~LKPGG~wIN~GPLl-Yh---~~ 341 (397)
....++.+..+|+.++. ...++||+|++...+ ........+++.++++|||||++|-..+.. +. +.
T Consensus 80 ----~~~~~~~~~~~d~~~~~---~~~~~~D~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~ 152 (235)
T 3sm3_A 80 ----KTGGKAEFKVENASSLS---FHDSSFDFAVMQAFLTSVPDPKERSRIIKEVFRVLKPGAYLYLVEFGQNWHLKLYR 152 (235)
T ss_dssp ----SSSCEEEEEECCTTSCC---SCTTCEEEEEEESCGGGCCCHHHHHHHHHHHHHHEEEEEEEEEEEEBCCTTSHHHH
T ss_pred ----ccCcceEEEEecccccC---CCCCceeEEEEcchhhcCCCHHHHHHHHHHHHHHcCCCeEEEEEECCcchhHHHHH
Confidence 01124788999987753 235889999987643 344445689999999999999998532210 00 00
Q ss_pred --------h--ccC----------CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 342 --------D--LYG----------QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 342 --------d--~~g----------~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
. ..+ ..+.....++.++++++++++||+++...
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~aGf~~~~~~ 205 (235)
T 3sm3_A 153 KRYLHDFPITKEEGSFLARDPETGETEFIAHHFTEKELVFLLTDCRFEIDYFR 205 (235)
T ss_dssp HHHHHHHHHHCSTTEEEEECTTTCCEEEEEECBCHHHHHHHHHTTTEEEEEEE
T ss_pred HHhhhhccchhhhcceEecccccCCcceeeEeCCHHHHHHHHHHcCCEEEEEE
Confidence 0 000 00001235799999999999999999854
|
| >3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=7.3e-15 Score=139.83 Aligned_cols=159 Identities=11% Similarity=0.010 Sum_probs=110.2
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
.++.+.+.+.. .++.+|||+|||+|.++..||++ |..|+|+|+|..|+..++-.+...
T Consensus 60 ~~~~~~~~~~~---~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~------------------ 118 (302)
T 3hem_A 60 KRKLALDKLNL---EPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFDEV------------------ 118 (302)
T ss_dssp HHHHHHHTTCC---CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHS------------------
T ss_pred HHHHHHHHcCC---CCcCEEEEeeccCcHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc------------------
Confidence 34444444432 26779999999999999999999 999999999999998776322110
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCCh---------hhHHHHHHHHHHh
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA---------HNIVEYIEIISRI 323 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta---------~Ni~~yi~~I~~~ 323 (397)
....++.+..+|+.++ .++||+|++...+... .++..+++.+.++
T Consensus 119 --------------------~~~~~v~~~~~d~~~~------~~~fD~v~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~ 172 (302)
T 3hem_A 119 --------------------DSPRRKEVRIQGWEEF------DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNL 172 (302)
T ss_dssp --------------------CCSSCEEEEECCGGGC------CCCCSEEEEESCGGGTTCCSSCCCTTHHHHHHHHHHHS
T ss_pred --------------------CCCCceEEEECCHHHc------CCCccEEEEcchHHhcCccccccchhHHHHHHHHHHHh
Confidence 1122478899998775 3789999987543222 5678999999999
Q ss_pred ccCCcEEEEecCCcchhh--hccC-----------------CCCCccccCCHHHHHHHHHhCCCEEEEEeecCCCC
Q 015966 324 LKDGGVWINLGPLLYHFA--DLYG-----------------QEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTY 380 (397)
Q Consensus 324 LKPGG~wIN~GPLlYh~~--d~~g-----------------~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~~~Y 380 (397)
|||||+++-..+...... ...+ ..+ .....+.+++.+++++.||+++........|
T Consensus 173 LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p-~~~~~s~~~~~~~l~~aGf~~~~~~~~~~~y 247 (302)
T 3hem_A 173 TPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFP-GGRLPRISQVDYYSSNAGWKVERYHRIGANY 247 (302)
T ss_dssp SCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCT-TCCCCCHHHHHHHHHHHTCEEEEEEECGGGH
T ss_pred cCCCcEEEEEEEeccCccchhhccccccccccchHHHHHHhcCC-CCCCCCHHHHHHHHHhCCcEEEEEEeCchhH
Confidence 999999995322110000 0000 001 1235789999999999999999876544444
|
| >3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.63 E-value=7.1e-15 Score=133.72 Aligned_cols=157 Identities=15% Similarity=0.150 Sum_probs=107.9
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccc
Q 015966 171 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 248 (397)
Q Consensus 171 y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~ 248 (397)
|..+.+.+.+.++.. .++.+|||+|||+|+++..|+++ |..|+|+|+|..|+..++-.+..
T Consensus 28 ~~~~~~~~~~~~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~--------------- 90 (234)
T 3dtn_A 28 FDDFYGVSVSIASVD--TENPDILDLGAGTGLLSAFLMEKYPEATFTLVDMSEKMLEIAKNRFRG--------------- 90 (234)
T ss_dssp HHHHHHHHHHTCCCS--CSSCEEEEETCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTCS---------------
T ss_pred HHHHHHHHHHHhhcC--CCCCeEEEecCCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHHhhcc---------------
Confidence 334555666665532 36789999999999999999999 88999999999999876621100
Q ss_pred ccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCCh--hhHHHHHHHHHHhccC
Q 015966 249 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKD 326 (397)
Q Consensus 249 ~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta--~Ni~~yi~~I~~~LKP 326 (397)
..++.++.+|+.++.. .++||+|++...+... .....+++.++++|||
T Consensus 91 --------------------------~~~~~~~~~d~~~~~~----~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~Lkp 140 (234)
T 3dtn_A 91 --------------------------NLKVKYIEADYSKYDF----EEKYDMVVSALSIHHLEDEDKKELYKRSYSILKE 140 (234)
T ss_dssp --------------------------CTTEEEEESCTTTCCC----CSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEE
T ss_pred --------------------------CCCEEEEeCchhccCC----CCCceEEEEeCccccCCHHHHHHHHHHHHHhcCC
Confidence 0137889999887532 2799999988644332 3345799999999999
Q ss_pred CcEEEEecCCc-------------ch-hhhccCC----------CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 327 GGVWINLGPLL-------------YH-FADLYGQ----------EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 327 GG~wIN~GPLl-------------Yh-~~d~~g~----------~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
||++|-..+.. |. +....+. .......++.+++.++++++||+.++..
T Consensus 141 gG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGF~~v~~~ 212 (234)
T 3dtn_A 141 SGIFINADLVHGETAFIENLNKTIWRQYVENSGLTEEEIAAGYERSKLDKDIEMNQQLNWLKEAGFRDVSCI 212 (234)
T ss_dssp EEEEEEEEECBCSSHHHHHHHHHHHHHHHHTSSCCHHHHHTTC----CCCCCBHHHHHHHHHHTTCEEEEEE
T ss_pred CcEEEEEEecCCCChhhhhHHHHHHHHHHHhcCCCHHHHHHHHHhcccccccCHHHHHHHHHHcCCCceeee
Confidence 99999532211 00 0000010 0011234799999999999999998754
|
| >2p35_A Trans-aconitate 2-methyltransferase; SAM dependent methyltrans agrobacterium tumefaciens, structural genomics, PSI-2; HET: SAH; 1.95A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.5e-15 Score=139.73 Aligned_cols=148 Identities=12% Similarity=0.002 Sum_probs=104.5
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 175 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 175 l~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
...|.+.++. .++.+|||+|||+|.++..|+++ |..|+|+|+|..|+..++-.
T Consensus 22 ~~~l~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~~D~s~~~~~~a~~~---------------------- 76 (259)
T 2p35_A 22 ARDLLAQVPL---ERVLNGYDLGCGPGNSTELLTDRYGVNVITGIDSDDDMLEKAADR---------------------- 76 (259)
T ss_dssp HHHHHTTCCC---SCCSSEEEETCTTTHHHHHHHHHHCTTSEEEEESCHHHHHHHHHH----------------------
T ss_pred HHHHHHhcCC---CCCCEEEEecCcCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHh----------------------
Confidence 3344444432 25679999999999999999999 89999999999999766511
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
. .++.+..+|+.++. ..++||+|++...+...++....|+.++++|||||+++-
T Consensus 77 -----------~-----------~~~~~~~~d~~~~~----~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~ 130 (259)
T 2p35_A 77 -----------L-----------PNTNFGKADLATWK----PAQKADLLYANAVFQWVPDHLAVLSQLMDQLESGGVLAV 130 (259)
T ss_dssp -----------S-----------TTSEEEECCTTTCC----CSSCEEEEEEESCGGGSTTHHHHHHHHGGGEEEEEEEEE
T ss_pred -----------C-----------CCcEEEECChhhcC----ccCCcCEEEEeCchhhCCCHHHHHHHHHHhcCCCeEEEE
Confidence 0 12567888987753 257899999987665556788999999999999999995
Q ss_pred ecCCcch---------------hhhccCCC-CCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 333 LGPLLYH---------------FADLYGQE-DEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 333 ~GPLlYh---------------~~d~~g~~-~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
..|-.+. |....... +.....++.+++.++++++||++...
T Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~v~~~ 187 (259)
T 2p35_A 131 QMPDNLQEPTHIAMHETADGGPWKDAFSGGGLRRKPLPPPSDYFNALSPKSSRVDVW 187 (259)
T ss_dssp EEECCTTSHHHHHHHHHHHHSTTGGGC-------CCCCCHHHHHHHHGGGEEEEEEE
T ss_pred EeCCCCCcHHHHHHHHHhcCcchHHHhccccccccCCCCHHHHHHHHHhcCCceEEE
Confidence 3332111 11100000 11123479999999999999986553
|
| >3d2l_A SAM-dependent methyltransferase; ZP_00538691.1, structural G joint center for structural genomics, JCSG; HET: MSE; 1.90A {Exiguobacterium sibiricum 255-15} | Back alignment and structure |
|---|
Probab=99.63 E-value=9.6e-15 Score=132.75 Aligned_cols=113 Identities=17% Similarity=0.175 Sum_probs=88.8
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccc
Q 015966 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (397)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~ 249 (397)
.|..+++.+.+.++ ++.+|||+|||+|+++..|+++ ..|+|+|+|..|+..++-.+...
T Consensus 19 ~~~~~~~~~~~~~~-----~~~~vLdiG~G~G~~~~~l~~~-~~v~~vD~s~~~~~~a~~~~~~~--------------- 77 (243)
T 3d2l_A 19 PYPEWVAWVLEQVE-----PGKRIADIGCGTGTATLLLADH-YEVTGVDLSEEMLEIAQEKAMET--------------- 77 (243)
T ss_dssp CHHHHHHHHHHHSC-----TTCEEEEESCTTCHHHHHHTTT-SEEEEEESCHHHHHHHHHHHHHT---------------
T ss_pred cHHHHHHHHHHHcC-----CCCeEEEecCCCCHHHHHHhhC-CeEEEEECCHHHHHHHHHhhhhc---------------
Confidence 46678888888775 3479999999999999999999 99999999999998776322100
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee----ccCChhhHHHHHHHHHHhcc
Q 015966 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF----FIDTAHNIVEYIEIISRILK 325 (397)
Q Consensus 250 Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F----FIDta~Ni~~yi~~I~~~LK 325 (397)
..++.++.+|+.++.. .++||+|++.+ ++....++..+++.++++||
T Consensus 78 -------------------------~~~~~~~~~d~~~~~~----~~~fD~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~ 128 (243)
T 3d2l_A 78 -------------------------NRHVDFWVQDMRELEL----PEPVDAITILCDSLNYLQTEADVKQTFDSAARLLT 128 (243)
T ss_dssp -------------------------TCCCEEEECCGGGCCC----SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHHEE
T ss_pred -------------------------CCceEEEEcChhhcCC----CCCcCEEEEeCCchhhcCCHHHHHHHHHHHHHhcC
Confidence 0126778899877522 37899999753 45566788899999999999
Q ss_pred CCcEEEE
Q 015966 326 DGGVWIN 332 (397)
Q Consensus 326 PGG~wIN 332 (397)
|||++|-
T Consensus 129 pgG~l~~ 135 (243)
T 3d2l_A 129 DGGKLLF 135 (243)
T ss_dssp EEEEEEE
T ss_pred CCeEEEE
Confidence 9999984
|
| >3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.63 E-value=9e-16 Score=136.50 Aligned_cols=159 Identities=18% Similarity=0.152 Sum_probs=110.0
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccc
Q 015966 171 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (397)
Q Consensus 171 y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~ 249 (397)
|+.+.+.+.+.++.. ++ +|||+|||+|+++..|+++ |..|+|+|+|..|+..++-.+...
T Consensus 29 ~~~~~~~~~~~~~~~---~~-~vLdiG~G~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~~--------------- 89 (219)
T 3dlc_A 29 YPIIAENIINRFGIT---AG-TCIDIGSGPGALSIALAKQSDFSIRALDFSKHMNEIALKNIADA--------------- 89 (219)
T ss_dssp HHHHHHHHHHHHCCC---EE-EEEEETCTTSHHHHHHHHHSEEEEEEEESCHHHHHHHHHHHHHT---------------
T ss_pred cHHHHHHHHHhcCCC---CC-EEEEECCCCCHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHhc---------------
Confidence 455667776666532 33 9999999999999999998 889999999999998776332110
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcE
Q 015966 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGV 329 (397)
Q Consensus 250 Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~ 329 (397)
....++.+..+|+.++- ...++||+|++...+....+...+++.++++|||||+
T Consensus 90 -----------------------~~~~~~~~~~~d~~~~~---~~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~ 143 (219)
T 3dlc_A 90 -----------------------NLNDRIQIVQGDVHNIP---IEDNYADLIVSRGSVFFWEDVATAFREIYRILKSGGK 143 (219)
T ss_dssp -----------------------TCTTTEEEEECBTTBCS---SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEE
T ss_pred -----------------------cccCceEEEEcCHHHCC---CCcccccEEEECchHhhccCHHHHHHHHHHhCCCCCE
Confidence 01124788999988753 2357999999886555556788999999999999999
Q ss_pred EEEecCCcch-h--------hhccCCCC----CccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 330 WINLGPLLYH-F--------ADLYGQED----EMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 330 wIN~GPLlYh-~--------~d~~g~~~----~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
++-..+..-. . ........ ...-.++.+++.++++++||+.++..
T Consensus 144 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~v~~~ 201 (219)
T 3dlc_A 144 TYIGGGFGNKELRDSISAEMIRKNPDWKEFNRKNISQENVERFQNVLDEIGISSYEII 201 (219)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHCTTHHHHHHHHSSHHHHHHHHHHHHHHTCSSEEEE
T ss_pred EEEEeccCcHHHHHHHHHHHHHhHHHHHhhhhhccccCCHHHHHHHHHHcCCCeEEEE
Confidence 9853222100 0 00000000 00113478999999999999887644
|
| >3cc8_A Putative methyltransferase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS transferase; 1.64A {Bacillus cereus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.7e-15 Score=135.71 Aligned_cols=156 Identities=17% Similarity=0.147 Sum_probs=108.5
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~ 253 (397)
+...|.+.++ .++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++-..
T Consensus 21 ~~~~l~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~~~~~D~~~~~~~~~~~~~---------------------- 74 (230)
T 3cc8_A 21 VNPNLLKHIK----KEWKEVLDIGCSSGALGAAIKENGTRVSGIEAFPEAAEQAKEKL---------------------- 74 (230)
T ss_dssp CCHHHHTTCC----TTCSEEEEETCTTSHHHHHHHTTTCEEEEEESSHHHHHHHHTTS----------------------
T ss_pred HHHHHHHHhc----cCCCcEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHhC----------------------
Confidence 4445555554 25679999999999999999999999999999999987654100
Q ss_pred CcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe
Q 015966 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 333 (397)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~ 333 (397)
..+..+|+.+.. .+..+++||+|++...+....+...+++.++++|||||++|-.
T Consensus 75 ------------------------~~~~~~d~~~~~-~~~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~~gG~l~~~ 129 (230)
T 3cc8_A 75 ------------------------DHVVLGDIETMD-MPYEEEQFDCVIFGDVLEHLFDPWAVIEKVKPYIKQNGVILAS 129 (230)
T ss_dssp ------------------------SEEEESCTTTCC-CCSCTTCEEEEEEESCGGGSSCHHHHHHHTGGGEEEEEEEEEE
T ss_pred ------------------------CcEEEcchhhcC-CCCCCCccCEEEECChhhhcCCHHHHHHHHHHHcCCCCEEEEE
Confidence 134556765531 1233578999998876655556779999999999999999964
Q ss_pred cCCcchhh-------hcc-----CC-CCCccccCCHHHHHHHHHhCCCEEEEEeecCCCC
Q 015966 334 GPLLYHFA-------DLY-----GQ-EDEMSIELSLEDVKRVALHYGFEFEKEKTIETTY 380 (397)
Q Consensus 334 GPLlYh~~-------d~~-----g~-~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~~~Y 380 (397)
.|....+. ... +. .+.....++.++++++++++||++++.......|
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~~~~~~~~ 189 (230)
T 3cc8_A 130 IPNVSHISVLAPLLAGNWTYTEYGLLDKTHIRFFTFNEMLRMFLKAGYSISKVDRVYVDH 189 (230)
T ss_dssp EECTTSHHHHHHHHTTCCCCBSSSTTBTTCCCCCCHHHHHHHHHHTTEEEEEEEEEECCC
T ss_pred eCCcchHHHHHHHhcCCceeccCCCCCcceEEEecHHHHHHHHHHcCCeEEEEEecccCh
Confidence 44321110 000 00 0111234799999999999999999866544444
|
| >3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} | Back alignment and structure |
|---|
Probab=99.63 E-value=8.9e-15 Score=136.04 Aligned_cols=159 Identities=13% Similarity=0.121 Sum_probs=111.6
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
+++.|.+.++. .++.+|||+|||+|.++..|+++ |..|+|+|+|..|+..++......
T Consensus 49 ~~~~l~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~------------------ 107 (273)
T 3bus_A 49 LTDEMIALLDV---RSGDRVLDVGCGIGKPAVRLATARDVRVTGISISRPQVNQANARATAA------------------ 107 (273)
T ss_dssp HHHHHHHHSCC---CTTCEEEEESCTTSHHHHHHHHHSCCEEEEEESCHHHHHHHHHHHHHT------------------
T ss_pred HHHHHHHhcCC---CCCCEEEEeCCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHhc------------------
Confidence 45555555542 25679999999999999999985 899999999999998776322100
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
....++.+..+|+.++- ..+++||+|++...+....+...+|+.++++|||||+++-
T Consensus 108 --------------------~~~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i 164 (273)
T 3bus_A 108 --------------------GLANRVTFSYADAMDLP---FEDASFDAVWALESLHHMPDRGRALREMARVLRPGGTVAI 164 (273)
T ss_dssp --------------------TCTTTEEEEECCTTSCC---SCTTCEEEEEEESCTTTSSCHHHHHHHHHTTEEEEEEEEE
T ss_pred --------------------CCCcceEEEECccccCC---CCCCCccEEEEechhhhCCCHHHHHHHHHHHcCCCeEEEE
Confidence 01123788899987752 2357999999987776667788999999999999999984
Q ss_pred ecCC----cchhhhc----cCCCCCccccCCHHHHHHHHHhCCCEEEEEeec
Q 015966 333 LGPL----LYHFADL----YGQEDEMSIELSLEDVKRVALHYGFEFEKEKTI 376 (397)
Q Consensus 333 ~GPL----lYh~~d~----~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i 376 (397)
..+. ....... ..........++.+++.++++++||+++....+
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~~~ 216 (273)
T 3bus_A 165 ADFVLLAPVEGAKKEAVDAFRAGGGVLSLGGIDEYESDVRQAELVVTSTVDI 216 (273)
T ss_dssp EEEEESSCCCHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHTTCEEEEEEEC
T ss_pred EEeeccCCCChhHHHHHHHHHhhcCccCCCCHHHHHHHHHHcCCeEEEEEEC
Confidence 2211 1110000 000000123589999999999999999886543
|
| >1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.63 E-value=2.4e-15 Score=139.43 Aligned_cols=143 Identities=14% Similarity=0.108 Sum_probs=103.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++-.+... . +
T Consensus 37 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~--------------------------~--~---- 84 (260)
T 1vl5_A 37 GNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGN--------------------------G--H---- 84 (260)
T ss_dssp SCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHT--------------------------T--C----
T ss_pred CCCEEEEEeCCCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhc--------------------------C--C----
Confidence 5679999999999999999999999999999999998776322100 0 0
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe---cCCc---chhhh
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL---GPLL---YHFAD 342 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~---GPLl---Yh~~d 342 (397)
.++.++.+|+.++- ..+++||+|++.+.+...++....|+.++++|||||+++-. +|-. -.+..
T Consensus 85 -------~~v~~~~~d~~~l~---~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~~~~~~~~~~~~~~~~~~ 154 (260)
T 1vl5_A 85 -------QQVEYVQGDAEQMP---FTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFYN 154 (260)
T ss_dssp -------CSEEEEECCC-CCC---SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHHH
T ss_pred -------CceEEEEecHHhCC---CCCCCEEEEEEhhhhHhcCCHHHHHHHHHHHcCCCCEEEEEEcCCCCCHHHHHHHH
Confidence 13678899987752 33589999999876555567789999999999999999853 2211 00000
Q ss_pred ---ccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 343 ---LYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 343 ---~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
... .+.....++.+++.+++++.||+++...
T Consensus 155 ~~~~~~-~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 188 (260)
T 1vl5_A 155 YVEKER-DYSHHRAWKKSDWLKMLEEAGFELEELH 188 (260)
T ss_dssp HHHHHH-CTTCCCCCBHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHhc-CccccCCCCHHHHHHHHHHCCCeEEEEE
Confidence 000 1111235799999999999999988744
|
| >3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A | Back alignment and structure |
|---|
Probab=99.63 E-value=3.9e-15 Score=134.50 Aligned_cols=149 Identities=14% Similarity=0.215 Sum_probs=100.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|+++..|+++| ..|+|+|+|..|+..++-.+... .+++
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----------------------------~~~~ 80 (217)
T 3jwh_A 29 NARRVIDLGCGQGNLLKILLKDSFFEQITGVDVSYRSLEIAQERLDRL----------------------------RLPR 80 (217)
T ss_dssp TCCEEEEETCTTCHHHHHHHHCTTCSEEEEEESCHHHHHHHHHHHTTC----------------------------CCCH
T ss_pred CCCEEEEeCCCCCHHHHHHHhhCCCCEEEEEECCHHHHHHHHHHHHHh----------------------------cCCc
Confidence 46799999999999999999987 58999999999998776322100 0000
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCCcEEEEecCCcch--hhh
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYH--FAD 342 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh--~~d 342 (397)
. ...++.++.+|+.... ...++||+|++...+. +.+++..+++.++++|||||++|.....-|. |..
T Consensus 81 ~------~~~~v~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~li~~~~~~~~~~~~~ 151 (217)
T 3jwh_A 81 N------QWERLQLIQGALTYQD---KRFHGYDAATVIEVIEHLDLSRLGAFERVLFEFAQPKIVIVTTPNIEYNVKFAN 151 (217)
T ss_dssp H------HHTTEEEEECCTTSCC---GGGCSCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBHHHHHHTC-
T ss_pred c------cCcceEEEeCCccccc---ccCCCcCEEeeHHHHHcCCHHHHHHHHHHHHHHcCCCEEEEEccCcccchhhcc
Confidence 0 0014788999975432 2347899999876444 4446789999999999999988853221111 100
Q ss_pred c-cCC--CCCccccCCHHHHH----HHHHhCCCEEEEEe
Q 015966 343 L-YGQ--EDEMSIELSLEDVK----RVALHYGFEFEKEK 374 (397)
Q Consensus 343 ~-~g~--~~~~~ieLS~EEl~----~ll~~~GFeii~e~ 374 (397)
. .+. .......++.+++. +++++.||+++...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Gf~v~~~~ 190 (217)
T 3jwh_A 152 LPAGKLRHKDHRFEWTRSQFQNWANKITERFAYNVQFQP 190 (217)
T ss_dssp ----------CCSCBCHHHHHHHHHHHHHHSSEEEEECC
T ss_pred cccccccccccccccCHHHHHHHHHHHHHHcCceEEEEe
Confidence 0 000 01124568999999 99999999987653
|
| >3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.1e-15 Score=143.66 Aligned_cols=138 Identities=17% Similarity=0.077 Sum_probs=100.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|.++..|++.|..|+|+|+|..|+..++-.+
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~------------------------------------- 99 (279)
T 3ccf_A 57 PGEFILDLGCGTGQLTEKIAQSGAEVLGTDNAATMIEKARQNY------------------------------------- 99 (279)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------------------------------------
T ss_pred CCCEEEEecCCCCHHHHHHHhCCCeEEEEECCHHHHHHHHhhC-------------------------------------
Confidence 5679999999999999999999999999999999997665110
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcc---hhhh---
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLY---HFAD--- 342 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlY---h~~d--- 342 (397)
.++.+..+|+.++. . .++||+|++.+.+....+....++.++++|||||+++-..|..- .+..
T Consensus 100 -------~~~~~~~~d~~~~~---~-~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 168 (279)
T 3ccf_A 100 -------PHLHFDVADARNFR---V-DKPLDAVFSNAMLHWVKEPEAAIASIHQALKSGGRFVAEFGGKGNIKYILEALY 168 (279)
T ss_dssp -------TTSCEEECCTTTCC---C-SSCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECTTTTHHHHHHHH
T ss_pred -------CCCEEEECChhhCC---c-CCCcCEEEEcchhhhCcCHHHHHHHHHHhcCCCcEEEEEecCCcchHHHHHHHH
Confidence 01567888887742 1 47899999887665555678999999999999999985222110 0000
Q ss_pred ----ccCC----CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 343 ----LYGQ----EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 343 ----~~g~----~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
..+. .......++.+++.++++++||+++..+
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 208 (279)
T 3ccf_A 169 NALETLGIHNPQALNPWYFPSIGEYVNILEKQGFDVTYAA 208 (279)
T ss_dssp HHHHHHTCCCGGGGCCCCCCCHHHHHHHHHHHTEEEEEEE
T ss_pred HHHHhcCCccccCcCceeCCCHHHHHHHHHHcCCEEEEEE
Confidence 0110 0001234699999999999999998854
|
| >3g2m_A PCZA361.24; SAM-dependent methyltransferase, glycopeptide antibiotics biosynthesis, structural genomics; 2.00A {Amycolatopsis orientalis} PDB: 3g2o_A* 3g2p_A* 3g2q_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=8e-15 Score=139.38 Aligned_cols=116 Identities=17% Similarity=0.190 Sum_probs=83.9
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
+.+..+.+.++. ++.+|||+|||+|+++..|+++|+.|+|+|+|..|+..++-.+...
T Consensus 70 ~~~~~~~~~~~~----~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~~~~~~~------------------ 127 (299)
T 3g2m_A 70 SEAREFATRTGP----VSGPVLELAAGMGRLTFPFLDLGWEVTALELSTSVLAAFRKRLAEA------------------ 127 (299)
T ss_dssp HHHHHHHHHHCC----CCSCEEEETCTTTTTHHHHHTTTCCEEEEESCHHHHHHHHHHHHTS------------------
T ss_pred HHHHHHHHhhCC----CCCcEEEEeccCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHhhc------------------
Confidence 344444444442 3349999999999999999999999999999999998776322100
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee---ccCChhhHHHHHHHHHHhccCCcE
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGV 329 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yi~~I~~~LKPGG~ 329 (397)
++. ...++.++.+|+.++.. .++||+|++.+ ..-+..++..+|+.++++|||||+
T Consensus 128 --------~~~----------~~~~v~~~~~d~~~~~~----~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~ 185 (299)
T 3g2m_A 128 --------PAD----------VRDRCTLVQGDMSAFAL----DKRFGTVVISSGSINELDEADRRGLYASVREHLEPGGK 185 (299)
T ss_dssp --------CHH----------HHTTEEEEECBTTBCCC----SCCEEEEEECHHHHTTSCHHHHHHHHHHHHHHEEEEEE
T ss_pred --------ccc----------cccceEEEeCchhcCCc----CCCcCEEEECCcccccCCHHHHHHHHHHHHHHcCCCcE
Confidence 000 00237889999988521 58899988653 222335688999999999999999
Q ss_pred EEE
Q 015966 330 WIN 332 (397)
Q Consensus 330 wIN 332 (397)
+|-
T Consensus 186 l~~ 188 (299)
T 3g2m_A 186 FLL 188 (299)
T ss_dssp EEE
T ss_pred EEE
Confidence 994
|
| >3bkw_A MLL3908 protein, S-adenosylmethionine dependent methyltransferase; NP_104914.1; HET: MSE; 1.60A {Mesorhizobium loti} | Back alignment and structure |
|---|
Probab=99.62 E-value=7.4e-15 Score=133.49 Aligned_cols=149 Identities=14% Similarity=0.187 Sum_probs=104.7
Q ss_pred HHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcc
Q 015966 178 LDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDS 256 (397)
Q Consensus 178 L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~ 256 (397)
|.+.++.. ++.+|||+|||+|+++..|+++|. .|+|+|+|..|+..++-...
T Consensus 35 l~~~~~~~---~~~~vLdiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~------------------------ 87 (243)
T 3bkw_A 35 LRAMLPEV---GGLRIVDLGCGFGWFCRWAHEHGASYVLGLDLSEKMLARARAAGP------------------------ 87 (243)
T ss_dssp HHHHSCCC---TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHTSC------------------------
T ss_pred HHHhcccc---CCCEEEEEcCcCCHHHHHHHHCCCCeEEEEcCCHHHHHHHHHhcc------------------------
Confidence 44445422 567999999999999999999999 99999999999986652110
Q ss_pred cCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCC
Q 015966 257 DQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL 336 (397)
Q Consensus 257 ~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPL 336 (397)
..++.+..+|+.++. ...++||+|++...+...++...+++.++++|||||++|-..|.
T Consensus 88 ------------------~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 146 (243)
T 3bkw_A 88 ------------------DTGITYERADLDKLH---LPQDSFDLAYSSLALHYVEDVARLFRTVHQALSPGGHFVFSTEH 146 (243)
T ss_dssp ------------------SSSEEEEECCGGGCC---CCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEC
T ss_pred ------------------cCCceEEEcChhhcc---CCCCCceEEEEeccccccchHHHHHHHHHHhcCcCcEEEEEeCC
Confidence 012677888987752 23578999998876555557889999999999999999842211
Q ss_pred ---------cchhhhc---------cCCC----------CCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 337 ---------LYHFADL---------YGQE----------DEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 337 ---------lYh~~d~---------~g~~----------~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
.|.+... +-.. .......|.+++.++++++||++++..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~l~~aGF~~~~~~ 212 (243)
T 3bkw_A 147 PIYMAPARPGWAIDAEGRRTWPIDRYLVEGPRKTDWLAKGVVKHHRTVGTTLNALIRSGFAIEHVE 212 (243)
T ss_dssp HHHHCCSSCSCEECTTSCEEEEECCTTCCEEECTTHHHHSCCEEECCHHHHHHHHHHTTCEEEEEE
T ss_pred cccccCcCcceeecCCCceEEeecccccccceeeeeccCceEEEeccHHHHHHHHHHcCCEeeeec
Confidence 0110000 0000 001122589999999999999998854
|
| >1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=1e-14 Score=137.04 Aligned_cols=154 Identities=12% Similarity=0.059 Sum_probs=106.8
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHH-HcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEIS-HLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA-~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
.++.+.+.++. .++.+|||+|||+|.++..+| +.|..|+|+|+|..|+..++-.+...
T Consensus 52 ~~~~~~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvd~s~~~~~~a~~~~~~~------------------ 110 (287)
T 1kpg_A 52 KIDLALGKLGL---QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLVANS------------------ 110 (287)
T ss_dssp HHHHHHTTTTC---CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTC------------------
T ss_pred HHHHHHHHcCC---CCcCEEEEECCcccHHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc------------------
Confidence 44445544432 256799999999999999999 66999999999999998776322100
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCCh--hhHHHHHHHHHHhccCCcEE
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVW 330 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta--~Ni~~yi~~I~~~LKPGG~w 330 (397)
....++.+..+|+.++ + ++||+|++...+... .+...+|+.++++|||||++
T Consensus 111 --------------------~~~~~~~~~~~d~~~~---~---~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l 164 (287)
T 1kpg_A 111 --------------------ENLRSKRVLLAGWEQF---D---EPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVM 164 (287)
T ss_dssp --------------------CCCSCEEEEESCGGGC---C---CCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEE
T ss_pred --------------------CCCCCeEEEECChhhC---C---CCeeEEEEeCchhhcChHHHHHHHHHHHHhcCCCCEE
Confidence 0112377888998664 2 789999988654433 57889999999999999999
Q ss_pred EEecCCcch-----------------hhh---ccCCCCCccccCCHHHHHHHHHhCCCEEEEEeec
Q 015966 331 INLGPLLYH-----------------FAD---LYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTI 376 (397)
Q Consensus 331 IN~GPLlYh-----------------~~d---~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i 376 (397)
+-..+.... +.+ .+ ..+ .....|.+++.++++++||++++....
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~~~~~s~~~~~~~l~~aGf~~~~~~~~ 228 (287)
T 1kpg_A 165 LLHTITGLHPKEIHERGLPMSFTFARFLKFIVTE-IFP-GGRLPSIPMVQECASANGFTVTRVQSL 228 (287)
T ss_dssp EEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHH-TST-TCCCCCHHHHHHHHHTTTCEEEEEEEC
T ss_pred EEEEecCCCccccccccccccccccchhhhHHhe-eCC-CCCCCCHHHHHHHHHhCCcEEEEEEeC
Confidence 952221100 000 00 001 012359999999999999999986543
|
| >2ex4_A Adrenal gland protein AD-003; methyltransferase, structural genomics, SGC, structural genomics consortium; HET: SAH; 1.75A {Homo sapiens} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.61 E-value=2.8e-15 Score=137.79 Aligned_cols=142 Identities=13% Similarity=0.196 Sum_probs=101.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|+++..|+++|. .|+|+|+|..|+..++-.+... +
T Consensus 79 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------------------~------ 126 (241)
T 2ex4_A 79 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEE--------------------------G------ 126 (241)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGG--------------------------G------
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHhhhc--------------------------C------
Confidence 567999999999999999999976 8999999999998776322100 0
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChh--hHHHHHHHHHHhccCCcEEEEecCCcchhhhccC
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH--NIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~--Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g 345 (397)
..++.++.+|+.++.. ..++||+|++...+.... .+..+|+.++++|||||++|-..|.... ...+.
T Consensus 127 -------~~~~~~~~~d~~~~~~---~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~-~~~~~ 195 (241)
T 2ex4_A 127 -------KRVRNYFCCGLQDFTP---EPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQE-GVILD 195 (241)
T ss_dssp -------GGEEEEEECCGGGCCC---CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSS-SEEEE
T ss_pred -------CceEEEEEcChhhcCC---CCCCEEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEccCCC-cceec
Confidence 0126778889877532 346899999886544333 3678999999999999999953332211 00000
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 346 QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 346 ~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
.....+..+.++++++++++||++++..
T Consensus 196 -~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 223 (241)
T 2ex4_A 196 -DVDSSVCRDLDVVRRIICSAGLSLLAEE 223 (241)
T ss_dssp -TTTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred -ccCCcccCCHHHHHHHHHHcCCeEEEee
Confidence 0111345699999999999999998865
|
| >2xvm_A Tellurite resistance protein TEHB; antibiotic resistance, transferase; HET: SAH; 1.48A {Escherichia coli} PDB: 2xva_A* 4dq0_A* 2i6g_A* | Back alignment and structure |
|---|
Probab=99.61 E-value=7.7e-15 Score=129.19 Aligned_cols=138 Identities=16% Similarity=0.142 Sum_probs=99.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|+++..|+++|+.|+|+|+|..|+..++-..... . +
T Consensus 32 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------------------~--~---- 79 (199)
T 2xvm_A 32 KPGKTLDLGCGNGRNSLYLAANGYDVDAWDKNAMSIANVERIKSIE--------------------------N--L---- 79 (199)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHH--------------------------T--C----
T ss_pred CCCeEEEEcCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhC--------------------------C--C----
Confidence 4569999999999999999999999999999999998776322110 0 0
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCC
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~ 346 (397)
.++.+..+|+.++. . .++||+|++...+. ...++..+++.++++|||||+++-+.+..- .....
T Consensus 80 -------~~~~~~~~d~~~~~---~-~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~~~~---~~~~~ 145 (199)
T 2xvm_A 80 -------DNLHTRVVDLNNLT---F-DRQYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDT---ADYPC 145 (199)
T ss_dssp -------TTEEEEECCGGGCC---C-CCCEEEEEEESCGGGSCGGGHHHHHHHHHHTEEEEEEEEEEEEBCC---SSSCC
T ss_pred -------CCcEEEEcchhhCC---C-CCCceEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEEeecc---CCcCC
Confidence 12677889987742 2 57899999875433 234788999999999999999774322210 00111
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 347 EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 347 ~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
++.....++.+|++++++. |++++.+
T Consensus 146 ~~~~~~~~~~~~l~~~~~~--f~~~~~~ 171 (199)
T 2xvm_A 146 TVGFPFAFKEGELRRYYEG--WERVKYN 171 (199)
T ss_dssp CSCCSCCBCTTHHHHHTTT--SEEEEEE
T ss_pred CCCCCCccCHHHHHHHhcC--CeEEEec
Confidence 1122456899999999976 9998844
|
| >1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 | Back alignment and structure |
|---|
Probab=99.61 E-value=5.3e-15 Score=135.59 Aligned_cols=142 Identities=15% Similarity=0.048 Sum_probs=102.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|+++..|+++|+. |+|+|+|..|+..++-.+..
T Consensus 93 ~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~---------------------------------- 138 (254)
T 1xtp_A 93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG---------------------------------- 138 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT----------------------------------
T ss_pred CCCEEEEECCCcCHHHHHHHHhhcCEEEEEeCCHHHHHHHHHHhcc----------------------------------
Confidence 5789999999999999999999764 99999999999876622100
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCCh--hhHHHHHHHHHHhccCCcEEEEecCCcchhhhccC
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta--~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g 345 (397)
..++.+..+|+.++. ...++||+|++...+... .++..+|+.++++|||||++|-..|..-.......
T Consensus 139 -------~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~~~~ 208 (254)
T 1xtp_A 139 -------MPVGKFILASMETAT---LPPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVD 208 (254)
T ss_dssp -------SSEEEEEESCGGGCC---CCSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEE
T ss_pred -------CCceEEEEccHHHCC---CCCCCeEEEEEcchhhhCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCcccceec
Confidence 012677889987752 235789999988655443 56889999999999999999954332100000000
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 346 QEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 346 ~~~~~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
.....+..+.++++++++++||++++...
T Consensus 209 -~~~~~~~~~~~~~~~~l~~aGf~~~~~~~ 237 (254)
T 1xtp_A 209 -KEDSSLTRSDIHYKRLFNESGVRVVKEAF 237 (254)
T ss_dssp -TTTTEEEBCHHHHHHHHHHHTCCEEEEEE
T ss_pred -ccCCcccCCHHHHHHHHHHCCCEEEEeee
Confidence 11124567999999999999999988653
|
| >1wzn_A SAM-dependent methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: SAH; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.1e-14 Score=133.90 Aligned_cols=100 Identities=21% Similarity=0.298 Sum_probs=78.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|+++..|+++|+.|+|+|+|..|+..++-.+...
T Consensus 41 ~~~~vLDlGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~---------------------------------- 86 (252)
T 1wzn_A 41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKER---------------------------------- 86 (252)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------------------------
T ss_pred CCCEEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHhc----------------------------------
Confidence 5679999999999999999999999999999999998776322100
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEee---ccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
+.++.++.+|+.++.. .++||+|++.+ ..-...++..+++.++++|||||++|-
T Consensus 87 ------~~~v~~~~~d~~~~~~----~~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~li~ 143 (252)
T 1wzn_A 87 ------NLKIEFLQGDVLEIAF----KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT 143 (252)
T ss_dssp ------TCCCEEEESCGGGCCC----CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ------CCceEEEECChhhccc----CCCccEEEEcCCchhcCCHHHHHHHHHHHHHHcCCCeEEEE
Confidence 0126788999987532 36899998653 222446788999999999999999983
|
| >2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.2e-14 Score=137.23 Aligned_cols=141 Identities=17% Similarity=0.112 Sum_probs=104.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|.++..|+++ |..|+|+|+|..|+..++-.+...
T Consensus 82 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~gvD~s~~~~~~a~~~~~~~--------------------------------- 128 (297)
T 2o57_A 82 RQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQA--------------------------------- 128 (297)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHH---------------------------------
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHhc---------------------------------
Confidence 5679999999999999999998 999999999999998776322110
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchh-------
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHF------- 340 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~------- 340 (397)
....++.++.+|+.++- ..+++||+|++...+....+...+|+.++++|||||+++-..|...+.
T Consensus 129 -----~~~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~ 200 (297)
T 2o57_A 129 -----GLADNITVKYGSFLEIP---CEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMAITDPMKEDGIDKSSIQ 200 (297)
T ss_dssp -----TCTTTEEEEECCTTSCS---SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEECTTCCGGGGH
T ss_pred -----CCCcceEEEEcCcccCC---CCCCCEeEEEecchhhhcCCHHHHHHHHHHHcCCCeEEEEEEeccCCCCchHHHH
Confidence 01123788999988752 235789999988765555567899999999999999999643321110
Q ss_pred --hhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 341 --ADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 341 --~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
..... .....+.+++.++++++||++++..
T Consensus 201 ~~~~~~~----~~~~~~~~~~~~~l~~aGf~~~~~~ 232 (297)
T 2o57_A 201 PILDRIK----LHDMGSLGLYRSLAKECGLVTLRTF 232 (297)
T ss_dssp HHHHHHT----CSSCCCHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHhc----CCCCCCHHHHHHHHHHCCCeEEEEE
Confidence 00000 0123589999999999999998854
|
| >3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-14 Score=133.23 Aligned_cols=155 Identities=10% Similarity=-0.014 Sum_probs=108.5
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
.+..+.+.++.. .++.+|||+|||+|.++..|++++. .|+|+|+|..|+..++-.....
T Consensus 33 ~~~~~l~~l~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~------------------ 92 (257)
T 3f4k_A 33 ATRKAVSFINEL--TDDAKIADIGCGTGGQTLFLADYVKGQITGIDLFPDFIEIFNENAVKA------------------ 92 (257)
T ss_dssp HHHHHHTTSCCC--CTTCEEEEETCTTSHHHHHHHHHCCSEEEEEESCHHHHHHHHHHHHHT------------------
T ss_pred HHHHHHHHHhcC--CCCCeEEEeCCCCCHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHc------------------
Confidence 445555555432 2567999999999999999999976 9999999999998776322100
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
....++.++.+|+.++- ...++||+|++...+... +...+++.++++|||||+++-
T Consensus 93 --------------------~~~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~-~~~~~l~~~~~~L~pgG~l~~ 148 (257)
T 3f4k_A 93 --------------------NCADRVKGITGSMDNLP---FQNEELDLIWSEGAIYNI-GFERGMNEWSKYLKKGGFIAV 148 (257)
T ss_dssp --------------------TCTTTEEEEECCTTSCS---SCTTCEEEEEEESCSCCC-CHHHHHHHHHTTEEEEEEEEE
T ss_pred --------------------CCCCceEEEECChhhCC---CCCCCEEEEEecChHhhc-CHHHHHHHHHHHcCCCcEEEE
Confidence 01123788999987652 235899999988655544 577999999999999999995
Q ss_pred ecCCcchhh------hccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 333 LGPLLYHFA------DLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 333 ~GPLlYh~~------d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
..|...... ..... ...-..+.+++.++++++||+++...
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~aGf~~v~~~ 194 (257)
T 3f4k_A 149 SEASWFTSERPAEIEDFWMD--AYPEISVIPTCIDKMERAGYTPTAHF 194 (257)
T ss_dssp EEEEESSSCCCHHHHHHHHH--HCTTCCBHHHHHHHHHHTTEEEEEEE
T ss_pred EEeeccCCCChHHHHHHHHH--hCCCCCCHHHHHHHHHHCCCeEEEEE
Confidence 433211100 00000 00113589999999999999998854
|
| >3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.3e-14 Score=131.03 Aligned_cols=149 Identities=15% Similarity=0.264 Sum_probs=100.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|+++..|+++| ..|+|+|+|..|+..++-.+... .+++
T Consensus 29 ~~~~vLDiGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~----------------------------~~~~ 80 (219)
T 3jwg_A 29 NAKKVIDLGCGEGNLLSLLLKDKSFEQITGVDVSYSVLERAKDRLKID----------------------------RLPE 80 (219)
T ss_dssp TCCEEEEETCTTCHHHHHHHTSTTCCEEEEEESCHHHHHHHHHHHTGG----------------------------GSCH
T ss_pred CCCEEEEecCCCCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHhh----------------------------cccc
Confidence 45799999999999999999998 69999999999998776322100 0000
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCC--hhhHHHHHHHHHHhccCCcEEEEecCCcch--hhh
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNIVEYIEIISRILKDGGVWINLGPLLYH--FAD 342 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDt--a~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh--~~d 342 (397)
. ...++.++.+|+.... ...++||+|++...+.. .+++..+++.++++|||||++|.....-|. |..
T Consensus 81 ~------~~~~v~~~~~d~~~~~---~~~~~fD~V~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~~i~~~~~~~~~~~~~ 151 (219)
T 3jwg_A 81 M------QRKRISLFQSSLVYRD---KRFSGYDAATVIEVIEHLDENRLQAFEKVLFEFTRPQTVIVSTPNKEYNFHYGN 151 (219)
T ss_dssp H------HHTTEEEEECCSSSCC---GGGTTCSEEEEESCGGGCCHHHHHHHHHHHHTTTCCSEEEEEEEBGGGGGCCCC
T ss_pred c------cCcceEEEeCcccccc---cccCCCCEEEEHHHHHhCCHHHHHHHHHHHHHhhCCCEEEEEccchhhhhhhcc
Confidence 0 0013788999975432 23578999998764433 235689999999999999988853221110 100
Q ss_pred cc-CC--CCCccccCCHHHHH----HHHHhCCCEEEEEe
Q 015966 343 LY-GQ--EDEMSIELSLEDVK----RVALHYGFEFEKEK 374 (397)
Q Consensus 343 ~~-g~--~~~~~ieLS~EEl~----~ll~~~GFeii~e~ 374 (397)
.. +. .......++.++++ +++++.||+++...
T Consensus 152 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~Gf~v~~~~ 190 (219)
T 3jwg_A 152 LFEGNLRHRDHRFEWTRKEFQTWAVKVAEKYGYSVRFLQ 190 (219)
T ss_dssp T-----GGGCCTTSBCHHHHHHHHHHHHHHHTEEEEEEE
T ss_pred cCcccccccCceeeecHHHHHHHHHHHHHHCCcEEEEEe
Confidence 00 00 01123467999999 88999999887754
|
| >3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.7e-14 Score=138.28 Aligned_cols=155 Identities=13% Similarity=-0.018 Sum_probs=107.6
Q ss_pred HHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCC
Q 015966 176 EELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLS 254 (397)
Q Consensus 176 ~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s 254 (397)
+.|.+.++.. .++.+|||+|||+|.++..||++ |..|+|+|+|..|+..++-.+...
T Consensus 106 ~~l~~~l~~~--~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~-------------------- 163 (312)
T 3vc1_A 106 EFLMDHLGQA--GPDDTLVDAGCGRGGSMVMAHRRFGSRVEGVTLSAAQADFGNRRAREL-------------------- 163 (312)
T ss_dssp HHHHTTSCCC--CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHT--------------------
T ss_pred HHHHHHhccC--CCCCEEEEecCCCCHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc--------------------
Confidence 4455555421 36789999999999999999999 999999999999998776322110
Q ss_pred cccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEec
Q 015966 255 DSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLG 334 (397)
Q Consensus 255 ~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~G 334 (397)
....++.++.+|+.++- ...++||+|++...+... +...+++.++++|||||++|-..
T Consensus 164 ------------------~~~~~v~~~~~d~~~~~---~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~~LkpgG~l~~~~ 221 (312)
T 3vc1_A 164 ------------------RIDDHVRSRVCNMLDTP---FDKGAVTASWNNESTMYV-DLHDLFSEHSRFLKVGGRYVTIT 221 (312)
T ss_dssp ------------------TCTTTEEEEECCTTSCC---CCTTCEEEEEEESCGGGS-CHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------------------CCCCceEEEECChhcCC---CCCCCEeEEEECCchhhC-CHHHHHHHHHHHcCCCcEEEEEE
Confidence 01124788999987752 235899999987654443 37899999999999999999533
Q ss_pred CCcchhhhccCC------CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 335 PLLYHFADLYGQ------EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 335 PLlYh~~d~~g~------~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
+........... .....-..+.+++.++++++||++++..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~l~~aGf~~~~~~ 267 (312)
T 3vc1_A 222 GCWNPRYGQPSKWVSQINAHFECNIHSRREYLRAMADNRLVPHTIV 267 (312)
T ss_dssp EEECTTTCSCCHHHHHHHHHHTCCCCBHHHHHHHHHTTTEEEEEEE
T ss_pred ccccccccchhHHHHHHHhhhcCCCCCHHHHHHHHHHCCCEEEEEE
Confidence 221110000000 0000124689999999999999998854
|
| >3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.5e-14 Score=134.86 Aligned_cols=157 Identities=11% Similarity=0.008 Sum_probs=109.0
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
..+..+.+.++. ..++.+|||+|||+|.++..||+++. .|+|+|+|..|+..++-.+...
T Consensus 32 ~~~~~~l~~l~~--~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~----------------- 92 (267)
T 3kkz_A 32 EVTLKALSFIDN--LTEKSLIADIGCGTGGQTMVLAGHVTGQVTGLDFLSGFIDIFNRNARQS----------------- 92 (267)
T ss_dssp HHHHHHHTTCCC--CCTTCEEEEETCTTCHHHHHHHTTCSSEEEEEESCHHHHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHhccc--CCCCCEEEEeCCCCCHHHHHHHhccCCEEEEEeCCHHHHHHHHHHHHHc-----------------
Confidence 344555555542 13678999999999999999999976 9999999999998776332110
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
....++.++.+|+.++. ...++||+|++...+... +...+++.++++|||||+++
T Consensus 93 ---------------------~~~~~v~~~~~d~~~~~---~~~~~fD~i~~~~~~~~~-~~~~~l~~~~~~LkpgG~l~ 147 (267)
T 3kkz_A 93 ---------------------GLQNRVTGIVGSMDDLP---FRNEELDLIWSEGAIYNI-GFERGLNEWRKYLKKGGYLA 147 (267)
T ss_dssp ---------------------TCTTTEEEEECCTTSCC---CCTTCEEEEEESSCGGGT-CHHHHHHHHGGGEEEEEEEE
T ss_pred ---------------------CCCcCcEEEEcChhhCC---CCCCCEEEEEEcCCceec-CHHHHHHHHHHHcCCCCEEE
Confidence 01124788999987753 235899999987644433 57899999999999999999
Q ss_pred EecCCcchhh------hccCCCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 332 NLGPLLYHFA------DLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 332 N~GPLlYh~~------d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
-..+...... .... .......+.+++.++++++||+++....
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~aGf~~v~~~~ 195 (267)
T 3kkz_A 148 VSECSWFTDERPAEINDFWM--DAYPEIDTIPNQVAKIHKAGYLPVATFI 195 (267)
T ss_dssp EEEEEESSSCCCHHHHHHHH--HHCTTCEEHHHHHHHHHHTTEEEEEEEE
T ss_pred EEEeeecCCCChHHHHHHHH--HhCCCCCCHHHHHHHHHHCCCEEEEEEE
Confidence 5433211000 0000 0001235899999999999999988653
|
| >3bxo_A N,N-dimethyltransferase; desosamine, sugar, carbohydrate, antibiotic, SAM, adoMet; HET: SAM UPP; 2.00A {Streptomyces venezuelae} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-14 Score=129.75 Aligned_cols=107 Identities=20% Similarity=0.216 Sum_probs=84.3
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
.+.+.|.++.+ ++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++-.+
T Consensus 29 ~~~~~l~~~~~-----~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~--------------------- 82 (239)
T 3bxo_A 29 DIADLVRSRTP-----EASSLLDVACGTGTHLEHFTKEFGDTAGLELSEDMLTHARKRL--------------------- 82 (239)
T ss_dssp HHHHHHHHHCT-----TCCEEEEETCTTSHHHHHHHHHHSEEEEEESCHHHHHHHHHHC---------------------
T ss_pred HHHHHHHHhcC-----CCCeEEEecccCCHHHHHHHHhCCcEEEEeCCHHHHHHHHHhC---------------------
Confidence 35566666553 4679999999999999999999999999999999997665110
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee----ccCChhhHHHHHHHHHHhccCCc
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF----FIDTAHNIVEYIEIISRILKDGG 328 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F----FIDta~Ni~~yi~~I~~~LKPGG 328 (397)
.++.+..+|+.++. . .++||+|++.+ ++....++..+++.++++|||||
T Consensus 83 -----------------------~~~~~~~~d~~~~~---~-~~~~D~v~~~~~~~~~~~~~~~~~~~l~~~~~~L~pgG 135 (239)
T 3bxo_A 83 -----------------------PDATLHQGDMRDFR---L-GRKFSAVVSMFSSVGYLKTTEELGAAVASFAEHLEPGG 135 (239)
T ss_dssp -----------------------TTCEEEECCTTTCC---C-SSCEEEEEECTTGGGGCCSHHHHHHHHHHHHHTEEEEE
T ss_pred -----------------------CCCEEEECCHHHcc---c-CCCCcEEEEcCchHhhcCCHHHHHHHHHHHHHhcCCCe
Confidence 01567888987752 1 47899999643 46566788999999999999999
Q ss_pred EEEE
Q 015966 329 VWIN 332 (397)
Q Consensus 329 ~wIN 332 (397)
++|-
T Consensus 136 ~l~~ 139 (239)
T 3bxo_A 136 VVVV 139 (239)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9994
|
| >2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* | Back alignment and structure |
|---|
Probab=99.59 E-value=1.3e-14 Score=138.90 Aligned_cols=154 Identities=12% Similarity=0.033 Sum_probs=107.7
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
.++.+.+.++. .++.+|||+|||+|.++..|+++ |..|+|+|+|..|+..++-.+...
T Consensus 78 ~~~~~~~~~~~---~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~~~~a~~~~~~~------------------ 136 (318)
T 2fk8_A 78 KVDLNLDKLDL---KPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLASI------------------ 136 (318)
T ss_dssp HHHHHHTTSCC---CTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHTS------------------
T ss_pred HHHHHHHhcCC---CCcCEEEEEcccchHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhc------------------
Confidence 44455554432 25679999999999999999998 999999999999998776332100
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCCh--hhHHHHHHHHHHhccCCcEE
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVW 330 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta--~Ni~~yi~~I~~~LKPGG~w 330 (397)
....++.+..+|+.++ .++||+|++...+... ++...+++.+.++|||||++
T Consensus 137 --------------------~~~~~v~~~~~d~~~~------~~~fD~v~~~~~l~~~~~~~~~~~l~~~~~~LkpgG~l 190 (318)
T 2fk8_A 137 --------------------DTNRSRQVLLQGWEDF------AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRM 190 (318)
T ss_dssp --------------------CCSSCEEEEESCGGGC------CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEE
T ss_pred --------------------CCCCceEEEECChHHC------CCCcCEEEEeChHHhcCHHHHHHHHHHHHHhcCCCcEE
Confidence 0112377888998764 2689999988655433 67889999999999999999
Q ss_pred EEecCCcch---hh--------------hcc--CCCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 331 INLGPLLYH---FA--------------DLY--GQEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 331 IN~GPLlYh---~~--------------d~~--g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
+-..|.... +. +.. ...+ .....+.+++.+++++.||++++...
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~~~~~l~~aGf~~~~~~~ 253 (318)
T 2fk8_A 191 TVQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFP-GGRLPSTEMMVEHGEKAGFTVPEPLS 253 (318)
T ss_dssp EEEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTST-TCCCCCHHHHHHHHHHTTCBCCCCEE
T ss_pred EEEEeccCCchhhhhccccccccccchhhHHHHhcCC-CCcCCCHHHHHHHHHhCCCEEEEEEe
Confidence 953221110 00 000 0001 12235999999999999999987543
|
| >2yqz_A Hypothetical protein TTHA0223; RNA methyltransferase, SAM, structural genomics, NPPSFA; HET: SAM; 1.80A {Thermus thermophilus} PDB: 2yr0_A | Back alignment and structure |
|---|
Probab=99.58 E-value=6.1e-15 Score=135.56 Aligned_cols=159 Identities=14% Similarity=0.160 Sum_probs=110.4
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccc
Q 015966 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (397)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~ 249 (397)
.+..+++.|.+..... .++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++..+.
T Consensus 22 ~~~~~~~~l~~~~~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~----------------- 82 (263)
T 2yqz_A 22 VAGQIATAMASAVHPK--GEEPVFLELGVGTGRIALPLIARGYRYIALDADAAMLEVFRQKIA----------------- 82 (263)
T ss_dssp HHHHHHHHHHHHCCCS--SSCCEEEEETCTTSTTHHHHHTTTCEEEEEESCHHHHHHHHHHTT-----------------
T ss_pred HHHHHHHHHHHhhcCC--CCCCEEEEeCCcCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHhh-----------------
Confidence 3556777775422211 256799999999999999999999999999999999987662210
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcE
Q 015966 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGV 329 (397)
Q Consensus 250 Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~ 329 (397)
....++.+..+|+.++. ..+++||+|++.+.+...++....++.++++|||||+
T Consensus 83 -----------------------~~~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~ 136 (263)
T 2yqz_A 83 -----------------------GVDRKVQVVQADARAIP---LPDESVHGVIVVHLWHLVPDWPKVLAEAIRVLKPGGA 136 (263)
T ss_dssp -----------------------TSCTTEEEEESCTTSCC---SCTTCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEE
T ss_pred -----------------------ccCCceEEEEcccccCC---CCCCCeeEEEECCchhhcCCHHHHHHHHHHHCCCCcE
Confidence 00123778889987652 2357899999987666556788999999999999999
Q ss_pred EEEe-c-C--Cc---c--hhh---hccCCC-CCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 330 WINL-G-P--LL---Y--HFA---DLYGQE-DEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 330 wIN~-G-P--Ll---Y--h~~---d~~g~~-~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
++-. + + -. + .+. ...+.+ +......+.+++.+++++.||+++..
T Consensus 137 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gf~~~~~ 193 (263)
T 2yqz_A 137 LLEGWDQAEASPEWTLQERWRAFAAEEGFPVERGLHAKRLKEVEEALRRLGLKPRTR 193 (263)
T ss_dssp EEEEEEEECCCHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHTTCCCEEE
T ss_pred EEEEecCCCccHHHHHHHHHHHHHHHhCCCcccccccCCHHHHHHHHHHcCCCcceE
Confidence 9853 1 1 00 0 000 001111 10122468999999999999997764
|
| >2g72_A Phenylethanolamine N-methyltransferase; HET: SAM F21; 2.00A {Homo sapiens} SCOP: c.66.1.15 PDB: 1yz3_A* 2an4_A* 2an5_A* 2g70_A* 2g71_A* 2an3_A* 2g8n_A* 2ony_A* 3hcb_A* 3hcc_A* 3hcd_A* 3hcf_A* 3kpj_A* 3kpu_A* 3kpv_A* 3kpw_A* 3kpy_A* 3kqm_A* 3kqo_A* 3kqp_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=3.4e-15 Score=141.26 Aligned_cols=185 Identities=16% Similarity=0.106 Sum_probs=105.2
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHH-cCCeEEEEeCCHHHHHHHHhhhhcccccCccc-cccccccccC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISH-LGFISQGNEFSYYMMICSSFILNHTETAGEWN-IYPWIHSNCN 251 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~-~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~-IyPfi~~~Sn 251 (397)
++..|.+.++.. ..++.+|||+|||+|+++..+++ .|..|+|+|+|..|+..++-.++.......+. ..+++.....
T Consensus 57 ~~~~l~~~l~~~-~~~~~~vLDiGcG~G~~~~l~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~~~~~~~~v~~~~~ 135 (289)
T 2g72_A 57 KLRCLAQTFATG-EVSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPGAFNWSMYSQHACLIEG 135 (289)
T ss_dssp HHHHHHHHHHTS-CSCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTTCCCCHHHHHHHHHHHC
T ss_pred HHHHHHHHhCCC-CCCCCeEEEECCCcChHHHHhhccCCCeEEEeCCCHHHHHHHHHHHhhCcccccchhhhhHHHHhcC
Confidence 344555544321 12567999999999997665655 37899999999999987763221100000000 0000000000
Q ss_pred C----CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCC---CCCCCccEEEEeeccCC----hhhHHHHHHHH
Q 015966 252 S----LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDP---SQVGAWDAVVTCFFIDT----AHNIVEYIEII 320 (397)
Q Consensus 252 ~----~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~---~~~~~fD~VvT~FFIDt----a~Ni~~yi~~I 320 (397)
. .....+++. ....++.+|+.+....+ ...++||+|++.+.+.. .+++..+|+.+
T Consensus 136 ~~~~~~~~~~~~~~--------------~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~ 201 (289)
T 2g72_A 136 KGECWQDKERQLRA--------------RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHI 201 (289)
T ss_dssp SCCCHHHHHHHHHH--------------HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHHHHHHHHH
T ss_pred cccchhhhHHHHHh--------------hhceEEecccCCCCCccccccCCCCCCEEEehhhhhhhcCCHHHHHHHHHHH
Confidence 0 000000000 01345667776621111 12467999999875543 56789999999
Q ss_pred HHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 321 SRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 321 ~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
+++|||||++|-.+.+--.+... +........++.+++++++++.||+++...
T Consensus 202 ~r~LkpGG~l~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~aGf~~~~~~ 254 (289)
T 2g72_A 202 TTLLRPGGHLLLIGALEESWYLA-GEARLTVVPVSEEEVREALVRSGYKVRDLR 254 (289)
T ss_dssp HTTEEEEEEEEEEEEESCCEEEE-TTEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred HHhcCCCCEEEEEEecCcceEEc-CCeeeeeccCCHHHHHHHHHHcCCeEEEee
Confidence 99999999999644221111000 101001235799999999999999998854
|
| >1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=2.1e-14 Score=132.30 Aligned_cols=144 Identities=15% Similarity=0.171 Sum_probs=103.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++..+... . +
T Consensus 21 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------------------~--~---- 68 (239)
T 1xxl_A 21 AEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEK--------------------------G--V---- 68 (239)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHH--------------------------T--C----
T ss_pred CCCEEEEEccCcCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHc--------------------------C--C----
Confidence 6779999999999999999999999999999999998776322100 0 0
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCC---c---chhhh
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL---L---YHFAD 342 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPL---l---Yh~~d 342 (397)
.++.+..+|+.++- ..+++||+|++.+.+....+....++.++++|||||+++-..+. . -.+..
T Consensus 69 -------~~v~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~ 138 (239)
T 1xxl_A 69 -------ENVRFQQGTAESLP---FPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVDHYAPEDPVLDEFVN 138 (239)
T ss_dssp -------CSEEEEECBTTBCC---SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECBCSSHHHHHHHH
T ss_pred -------CCeEEEecccccCC---CCCCcEEEEEECCchhhccCHHHHHHHHHHHcCCCcEEEEEEcCCCCChhHHHHHH
Confidence 12677889987642 33589999998865554456789999999999999999853221 1 00100
Q ss_pred ccC--CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 343 LYG--QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 343 ~~g--~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
... ..+.....++.+++.++++++||+++...
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~ 172 (239)
T 1xxl_A 139 HLNRLRDPSHVRESSLSEWQAMFSANQLAYQDIQ 172 (239)
T ss_dssp HHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHhccccccCCCCHHHHHHHHHHCCCcEEEEE
Confidence 000 00111235799999999999999988754
|
| >3i9f_A Putative type 11 methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.50A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.1e-14 Score=126.16 Aligned_cols=130 Identities=15% Similarity=0.070 Sum_probs=98.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++.. .
T Consensus 17 ~~~~vLDiG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---------------------------------~---- 59 (170)
T 3i9f_A 17 KKGVIVDYGCGNGFYCKYLLEFATKLYCIDINVIALKEVKEK---------------------------------F---- 59 (170)
T ss_dssp CCEEEEEETCTTCTTHHHHHTTEEEEEEECSCHHHHHHHHHH---------------------------------C----
T ss_pred CCCeEEEECCCCCHHHHHHHhhcCeEEEEeCCHHHHHHHHHh---------------------------------C----
Confidence 567999999999999999999998999999999999766511 0
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCCC
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQED 348 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~ 348 (397)
.++.+..+| ..+ ..++||+|++...+...++...+++.++++|||||+++-..+.. .+. ...+
T Consensus 60 -------~~v~~~~~d-~~~-----~~~~~D~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~---~~~-~~~~ 122 (170)
T 3i9f_A 60 -------DSVITLSDP-KEI-----PDNSVDFILFANSFHDMDDKQHVISEVKRILKDDGRVIIIDWRK---ENT-GIGP 122 (170)
T ss_dssp -------TTSEEESSG-GGS-----CTTCEEEEEEESCSTTCSCHHHHHHHHHHHEEEEEEEEEEEECS---SCC-SSSS
T ss_pred -------CCcEEEeCC-CCC-----CCCceEEEEEccchhcccCHHHHHHHHHHhcCCCCEEEEEEcCc---ccc-ccCc
Confidence 125677788 221 25789999998877766778899999999999999999532211 110 0011
Q ss_pred CccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 349 EMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 349 ~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
.....++.++++++++ ||++++..
T Consensus 123 ~~~~~~~~~~~~~~l~--Gf~~~~~~ 146 (170)
T 3i9f_A 123 PLSIRMDEKDYMGWFS--NFVVEKRF 146 (170)
T ss_dssp CGGGCCCHHHHHHHTT--TEEEEEEE
T ss_pred hHhhhcCHHHHHHHHh--CcEEEEcc
Confidence 2234589999999998 99998865
|
| >1ve3_A Hypothetical protein PH0226; dimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function, NPPSFA; HET: SAM; 2.10A {Pyrococcus horikoshii} SCOP: c.66.1.43 | Back alignment and structure |
|---|
Probab=99.57 E-value=8.1e-14 Score=125.34 Aligned_cols=127 Identities=15% Similarity=0.139 Sum_probs=94.6
Q ss_pred ccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccC
Q 015966 159 WAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAG 238 (397)
Q Consensus 159 WS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~ 238 (397)
|++....+.......+++.|.+.++ ++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++-.+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~vLDlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~---- 83 (227)
T 1ve3_A 13 YTDINSQEYRSRIETLEPLLMKYMK-----KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSR---- 83 (227)
T ss_dssp TTCTTSHHHHHHHHHHHHHHHHSCC-----SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----
T ss_pred hhcccHHHHHHHHHHHHHHHHHhcC-----CCCeEEEEeccCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhc----
Confidence 3333333333445667777777664 3579999999999999999999999999999999998776322100
Q ss_pred ccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeec--cCChhhHHHH
Q 015966 239 EWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF--IDTAHNIVEY 316 (397)
Q Consensus 239 ~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FF--IDta~Ni~~y 316 (397)
+.++.++.+|+.++. ...++||+|++... +....+..++
T Consensus 84 ------------------------------------~~~~~~~~~d~~~~~---~~~~~~D~v~~~~~~~~~~~~~~~~~ 124 (227)
T 1ve3_A 84 ------------------------------------ESNVEFIVGDARKLS---FEDKTFDYVIFIDSIVHFEPLELNQV 124 (227)
T ss_dssp ------------------------------------TCCCEEEECCTTSCC---SCTTCEEEEEEESCGGGCCHHHHHHH
T ss_pred ------------------------------------CCCceEEECchhcCC---CCCCcEEEEEEcCchHhCCHHHHHHH
Confidence 012678889987752 23578999998755 5566778899
Q ss_pred HHHHHHhccCCcEEEEe
Q 015966 317 IEIISRILKDGGVWINL 333 (397)
Q Consensus 317 i~~I~~~LKPGG~wIN~ 333 (397)
++.++++|||||++|-.
T Consensus 125 l~~~~~~L~~gG~l~~~ 141 (227)
T 1ve3_A 125 FKEVRRVLKPSGKFIMY 141 (227)
T ss_dssp HHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHcCCCcEEEEE
Confidence 99999999999999843
|
| >3ege_A Putative methyltransferase from antibiotic biosyn pathway; YP_324569.1, putative methyltransferase from antibiotic BIOS pathway; 2.40A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.9e-14 Score=134.42 Aligned_cols=152 Identities=14% Similarity=0.092 Sum_probs=105.9
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccccc
Q 015966 171 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (397)
Q Consensus 171 y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~S 250 (397)
+..+.+.|.+.++. .++.+|||+|||+|.++..|++.|..|+|+|+|..|+..++ ..
T Consensus 19 ~~~~~~~l~~~~~~---~~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~~~~a~-------~~------------- 75 (261)
T 3ege_A 19 DIRIVNAIINLLNL---PKGSVIADIGAGTGGYSVALANQGLFVYAVEPSIVMRQQAV-------VH------------- 75 (261)
T ss_dssp CHHHHHHHHHHHCC---CTTCEEEEETCTTSHHHHHHHTTTCEEEEECSCHHHHHSSC-------CC-------------
T ss_pred cHHHHHHHHHHhCC---CCCCEEEEEcCcccHHHHHHHhCCCEEEEEeCCHHHHHHHH-------hc-------------
Confidence 34567777776653 25789999999999999999999999999999999985322 00
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEE
Q 015966 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVW 330 (397)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~w 330 (397)
.++.+..+|+.++- ...++||+|++.+.+....+...+++.++++|| ||++
T Consensus 76 -------------------------~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~Lk-gG~~ 126 (261)
T 3ege_A 76 -------------------------PQVEWFTGYAENLA---LPDKSVDGVISILAIHHFSHLEKSFQEMQRIIR-DGTI 126 (261)
T ss_dssp -------------------------TTEEEECCCTTSCC---SCTTCBSEEEEESCGGGCSSHHHHHHHHHHHBC-SSCE
T ss_pred -------------------------cCCEEEECchhhCC---CCCCCEeEEEEcchHhhccCHHHHHHHHHHHhC-CcEE
Confidence 02678889987742 235899999998766555778899999999999 9966
Q ss_pred EEe--cCC----cchhhhccC-CCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 331 INL--GPL----LYHFADLYG-QEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 331 IN~--GPL----lYh~~d~~g-~~~~~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
+-+ +|- .|...-... .........+.+++. +++++||+.+....
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l~~aGF~~v~~~~ 177 (261)
T 3ege_A 127 VLLTFDIRLAQRIWLYDYFPFLWEDALRFLPLDEQIN-LLQENTKRRVEAIP 177 (261)
T ss_dssp EEEEECGGGCCCCGGGGTCHHHHHHHHTSCCHHHHHH-HHHHHHCSEEEEEE
T ss_pred EEEEcCCchhHHHHHHHHHHHHhhhhhhhCCCHHHHH-HHHHcCCCceeEEE
Confidence 532 211 111000000 000012235788899 99999998887653
|
| >3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A | Back alignment and structure |
|---|
Probab=99.55 E-value=5.3e-14 Score=133.19 Aligned_cols=156 Identities=14% Similarity=0.109 Sum_probs=110.0
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccc
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~ 249 (397)
.+++.+.+.+... .++.+|||+|||+|.++..|+++ |..|+|+|+|..|+..++-....
T Consensus 8 ~~~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~~~~~v~gvD~s~~~~~~a~~~~~~---------------- 69 (284)
T 3gu3_A 8 DYVSFLVNTVWKI--TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL---------------- 69 (284)
T ss_dssp HHHHHHHHTTSCC--CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEESCHHHHHHHHHHHHS----------------
T ss_pred HHHHHHHHHHhcc--CCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHh----------------
Confidence 3556666655432 26789999999999999999998 78999999999999877632210
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcE
Q 015966 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGV 329 (397)
Q Consensus 250 Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~ 329 (397)
.+.++.+..+|+.++.. .++||+|++...+...++...+++.++++|||||+
T Consensus 70 ------------------------~~~~v~~~~~d~~~~~~----~~~fD~v~~~~~l~~~~~~~~~l~~~~~~LkpgG~ 121 (284)
T 3gu3_A 70 ------------------------LPYDSEFLEGDATEIEL----NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGGK 121 (284)
T ss_dssp ------------------------SSSEEEEEESCTTTCCC----SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEEE
T ss_pred ------------------------cCCceEEEEcchhhcCc----CCCeeEEEECChhhcCCCHHHHHHHHHHHcCCCCE
Confidence 01137889999887532 46899999988766667788999999999999999
Q ss_pred EEEecCCc------chhhhc--------------cC--CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 330 WINLGPLL------YHFADL--------------YG--QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 330 wIN~GPLl------Yh~~d~--------------~g--~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
++-.-|.. +...+. +. ......-..+.+++.++++++||+.+...
T Consensus 122 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGF~~v~~~ 188 (284)
T 3gu3_A 122 IICFEPHWISNMASYLLDGEKQSEFIQLGVLQKLFESDTQRNGKDGNIGMKIPIYLSELGVKNIECR 188 (284)
T ss_dssp EEEEECCHHHHHHSEEETTSCHHHHCCHHHHHHHHHHHHHHTCCCTTGGGTHHHHHHHTTCEEEEEE
T ss_pred EEEEecchhcccccceecCcchhhccchHHHHHHHHHHhhhhcccccHHHHHHHHHHHcCCCeEEEE
Confidence 99655541 111100 00 00000112456789999999999988763
|
| >3cgg_A SAM-dependent methyltransferase; NP_600671.1, methyltransferase domain, structural genomics; HET: NHE CIT; 2.00A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-13 Score=120.29 Aligned_cols=125 Identities=18% Similarity=0.118 Sum_probs=96.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++-.+
T Consensus 46 ~~~~vLdiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~------------------------------------- 88 (195)
T 3cgg_A 46 RGAKILDAGCGQGRIGGYLSKQGHDVLGTDLDPILIDYAKQDF------------------------------------- 88 (195)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHC-------------------------------------
T ss_pred CCCeEEEECCCCCHHHHHHHHCCCcEEEEcCCHHHHHHHHHhC-------------------------------------
Confidence 5679999999999999999999999999999999997665211
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEe-ecc--CChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccC
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-FFI--DTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~-FFI--Dta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g 345 (397)
.++.+..+|+.++. ...++||+|++. ..+ -..++...+++.++++|||||++|-.-|.
T Consensus 89 -------~~~~~~~~d~~~~~---~~~~~~D~i~~~~~~~~~~~~~~~~~~l~~~~~~l~~~G~l~~~~~~--------- 149 (195)
T 3cgg_A 89 -------PEARWVVGDLSVDQ---ISETDFDLIVSAGNVMGFLAEDGREPALANIHRALGADGRAVIGFGA--------- 149 (195)
T ss_dssp -------TTSEEEECCTTTSC---CCCCCEEEEEECCCCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEET---------
T ss_pred -------CCCcEEEcccccCC---CCCCceeEEEECCcHHhhcChHHHHHHHHHHHHHhCCCCEEEEEeCC---------
Confidence 01466778887642 225789999986 222 23466789999999999999999842110
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 346 QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 346 ~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
.-.++.+++.+++++.||++++..
T Consensus 150 -----~~~~~~~~~~~~l~~~Gf~~~~~~ 173 (195)
T 3cgg_A 150 -----GRGWVFGDFLEVAERVGLELENAF 173 (195)
T ss_dssp -----TSSCCHHHHHHHHHHHTEEEEEEE
T ss_pred -----CCCcCHHHHHHHHHHcCCEEeeee
Confidence 123789999999999999998854
|
| >3thr_A Glycine N-methyltransferase; GNMT, folate, methyltransferase binding, liver cytosol, transferase-transferase inhibitor C; HET: C2F TAM; 2.00A {Rattus norvegicus} SCOP: c.66.1.5 PDB: 3ths_A* 1xva_A* 1d2c_A 1kia_A* 1nbh_A* 1bhj_A* 2idj_A 2idk_A* 1d2g_A 1d2h_A* 1nbi_A* 1r8x_A 1r8y_A 1r74_A* 2azt_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.1e-13 Score=130.24 Aligned_cols=108 Identities=13% Similarity=0.137 Sum_probs=78.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|+++..|+++|+.|+|+|+|..|+..++-.+... .. ...+
T Consensus 57 ~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~l~~a~~~~~~~---~~---------------------~~~~---- 108 (293)
T 3thr_A 57 GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYALKERWNR---RK---------------------EPAF---- 108 (293)
T ss_dssp TCCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT---TT---------------------SHHH----
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHhhhhc---cc---------------------cccc----
Confidence 4579999999999999999999999999999999998776321100 00 0000
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEe-ecc---CC----hhhHHHHHHHHHHhccCCcEEE
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-FFI---DT----AHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~-FFI---Dt----a~Ni~~yi~~I~~~LKPGG~wI 331 (397)
.++.+..+|+.++...-...++||+|++. ..+ .. ..++..+++.++++|||||++|
T Consensus 109 -------~~~~~~~~d~~~~~~~~~~~~~fD~V~~~g~~l~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~ 172 (293)
T 3thr_A 109 -------DKWVIEEANWLTLDKDVPAGDGFDAVICLGNSFAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 172 (293)
T ss_dssp -------HTCEEEECCGGGHHHHSCCTTCEEEEEECTTCGGGSCCSSSSSHHHHHHHHHHHHTEEEEEEEE
T ss_pred -------ceeeEeecChhhCccccccCCCeEEEEEcChHHhhcCccccCHHHHHHHHHHHHHHcCCCeEEE
Confidence 12667888887753000125789999986 433 22 3448899999999999999999
|
| >2p8j_A S-adenosylmethionine-dependent methyltransferase; NP_349143.1; HET: PGE GOL; 2.00A {Clostridium acetobutylicum} | Back alignment and structure |
|---|
Probab=99.54 E-value=3.9e-14 Score=126.13 Aligned_cols=155 Identities=18% Similarity=0.144 Sum_probs=105.1
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChh-HHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccc
Q 015966 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRL-ALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 248 (397)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRL-a~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~ 248 (397)
.|..+++.+...- ++.+|||+|||+|.+ ...+++.|+.|+|+|+|..|+..++-.+...
T Consensus 10 ~~~~~~~~~~~~~------~~~~vLDiGcG~G~~~~~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~-------------- 69 (209)
T 2p8j_A 10 QLYRFLKYCNESN------LDKTVLDCGAGGDLPPLSIFVEDGYKTYGIEISDLQLKKAENFSREN-------------- 69 (209)
T ss_dssp HHHHHHHHHHHSS------SCSEEEEESCCSSSCTHHHHHHTTCEEEEEECCHHHHHHHHHHHHHH--------------
T ss_pred hHHHHHHHHhccC------CCCEEEEECCCCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHhc--------------
Confidence 3555666665432 457999999999998 5677888999999999999998776322100
Q ss_pred ccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee---ccCChhhHHHHHHHHHHhcc
Q 015966 249 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILK 325 (397)
Q Consensus 249 ~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yi~~I~~~LK 325 (397)
..++.+..+|+.++. ...++||+|++.. ++. ..+....++.++++||
T Consensus 70 --------------------------~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~-~~~~~~~l~~~~~~Lk 119 (209)
T 2p8j_A 70 --------------------------NFKLNISKGDIRKLP---FKDESMSFVYSYGTIFHMR-KNDVKEAIDEIKRVLK 119 (209)
T ss_dssp --------------------------TCCCCEEECCTTSCC---SCTTCEEEEEECSCGGGSC-HHHHHHHHHHHHHHEE
T ss_pred --------------------------CCceEEEECchhhCC---CCCCceeEEEEcChHHhCC-HHHHHHHHHHHHHHcC
Confidence 012567888887752 2357899999753 342 4678899999999999
Q ss_pred CCcEEEEe--c--CCcch---------hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 326 DGGVWINL--G--PLLYH---------FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 326 PGG~wIN~--G--PLlYh---------~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
|||+++-. . ...|. |.......+.....++.+|+.+++...||...++.
T Consensus 120 pgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~g~~~~~~~ 181 (209)
T 2p8j_A 120 PGGLACINFLTTKDERYNKGEKIGEGEFLQLERGEKVIHSYVSLEEADKYFKDMKVLFKEDR 181 (209)
T ss_dssp EEEEEEEEEEETTSTTTTCSEEEETTEEEECC-CCCEEEEEECHHHHHHTTTTSEEEEEEEE
T ss_pred CCcEEEEEEecccchhccchhhhccccceeccCCCceeEEecCHHHHHHHHhhcCceeeeee
Confidence 99999841 1 11110 00000001111235799999999999999887654
|
| >3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=99.54 E-value=6.5e-14 Score=131.79 Aligned_cols=146 Identities=16% Similarity=0.145 Sum_probs=104.1
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
..+++.+... ++.+|||+|||+|+++..|+++|+.|+|+|+|..|+..++..+...
T Consensus 110 ~~~~~~~~~~-------~~~~vLD~GcG~G~~~~~l~~~g~~v~~vD~s~~~~~~a~~~~~~~----------------- 165 (286)
T 3m70_A 110 GDVVDAAKII-------SPCKVLDLGCGQGRNSLYLSLLGYDVTSWDHNENSIAFLNETKEKE----------------- 165 (286)
T ss_dssp HHHHHHHHHS-------CSCEEEEESCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT-----------------
T ss_pred HHHHHHhhcc-------CCCcEEEECCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHc-----------------
Confidence 3466665532 4679999999999999999999999999999999998776332110
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCCcE
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGV 329 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPGG~ 329 (397)
. .++.+..+|+.++.. .++||+|++...+. +.+.+..+++.+.++|||||+
T Consensus 166 ---------~--------------~~~~~~~~d~~~~~~----~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~ 218 (286)
T 3m70_A 166 ---------N--------------LNISTALYDINAANI----QENYDFIVSTVVFMFLNRERVPSIIKNMKEHTNVGGY 218 (286)
T ss_dssp ---------T--------------CCEEEEECCGGGCCC----CSCEEEEEECSSGGGSCGGGHHHHHHHHHHTEEEEEE
T ss_pred ---------C--------------CceEEEEeccccccc----cCCccEEEEccchhhCCHHHHHHHHHHHHHhcCCCcE
Confidence 0 026788899877532 58899999875333 345688999999999999999
Q ss_pred EEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 330 WINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 330 wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
++-+.+.. ......+......++.+++++++.. |+++..
T Consensus 219 l~i~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~ 257 (286)
T 3m70_A 219 NLIVAAMS---TDDVPCPLPFSFTFAENELKEYYKD--WEFLEY 257 (286)
T ss_dssp EEEEEEBC---CSSSCCSSCCSCCBCTTHHHHHTTT--SEEEEE
T ss_pred EEEEEecC---CCCCCCCCCccccCCHHHHHHHhcC--CEEEEE
Confidence 77422110 0111111122467899999999955 998874
|
| >4hg2_A Methyltransferase type 11; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MES; 1.60A {Anaeromyxobacter dehalogenans} | Back alignment and structure |
|---|
Probab=99.53 E-value=3e-14 Score=135.62 Aligned_cols=106 Identities=10% Similarity=0.096 Sum_probs=83.0
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
.+++.|.++.+ .+.+|||+|||+|.++..|+++|.+|+|+|+|..|+..|+ +
T Consensus 28 ~l~~~l~~~~~-----~~~~vLDvGcGtG~~~~~l~~~~~~v~gvD~s~~ml~~a~-------~---------------- 79 (257)
T 4hg2_A 28 ALFRWLGEVAP-----ARGDALDCGCGSGQASLGLAEFFERVHAVDPGEAQIRQAL-------R---------------- 79 (257)
T ss_dssp HHHHHHHHHSS-----CSSEEEEESCTTTTTHHHHHTTCSEEEEEESCHHHHHTCC-------C----------------
T ss_pred HHHHHHHHhcC-----CCCCEEEEcCCCCHHHHHHHHhCCEEEEEeCcHHhhhhhh-------h----------------
Confidence 37788888765 3468999999999999999999999999999999984221 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
..++.+..+|+.++- ..+++||+|++..-+.-. +...++++++++|||||+++-
T Consensus 80 ----------------------~~~v~~~~~~~e~~~---~~~~sfD~v~~~~~~h~~-~~~~~~~e~~rvLkpgG~l~~ 133 (257)
T 4hg2_A 80 ----------------------HPRVTYAVAPAEDTG---LPPASVDVAIAAQAMHWF-DLDRFWAELRRVARPGAVFAA 133 (257)
T ss_dssp ----------------------CTTEEEEECCTTCCC---CCSSCEEEEEECSCCTTC-CHHHHHHHHHHHEEEEEEEEE
T ss_pred ----------------------cCCceeehhhhhhhc---ccCCcccEEEEeeehhHh-hHHHHHHHHHHHcCCCCEEEE
Confidence 013678889987752 346899999987544332 356899999999999999974
|
| >3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=99.52 E-value=9.3e-14 Score=129.59 Aligned_cols=144 Identities=13% Similarity=0.158 Sum_probs=102.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++..|+++ |..|+|+|+|..|+..++-.+... .
T Consensus 37 ~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~----------------------------~--- 85 (276)
T 3mgg_A 37 PGAKVLEAGCGIGAQTVILAKNNPDAEITSIDISPESLEKARENTEKN----------------------------G--- 85 (276)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT----------------------------T---
T ss_pred CCCeEEEecCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc----------------------------C---
Confidence 6789999999999999999999 689999999999998776322110 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecC----Ccchhhh
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP----LLYHFAD 342 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GP----LlYh~~d 342 (397)
..++.++.+|+.++- ...++||+|++...+....+...+++.++++|||||+++-.-| ..++-..
T Consensus 86 --------~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~ 154 (276)
T 3mgg_A 86 --------IKNVKFLQANIFSLP---FEDSSFDHIFVCFVLEHLQSPEEALKSLKKVLKPGGTITVIEGDHGSCYFHPEG 154 (276)
T ss_dssp --------CCSEEEEECCGGGCC---SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEECGGGCEEESCC
T ss_pred --------CCCcEEEEcccccCC---CCCCCeeEEEEechhhhcCCHHHHHHHHHHHcCCCcEEEEEEcCCCCceECCCc
Confidence 013678889987752 2358999999987666666677999999999999999995321 1111000
Q ss_pred c---------cCC-CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 343 L---------YGQ-EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 343 ~---------~g~-~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
. ... .....-.++.+++.++++++||+++..+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~~v~~~ 196 (276)
T 3mgg_A 155 KKAIEAWNCLIRVQAYMKGNSLVGRQIYPLLQESGFEKIRVE 196 (276)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTGGGGHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHCCCCeEEEe
Confidence 0 000 0000123567899999999999998855
|
| >1vlm_A SAM-dependent methyltransferase; possible histamine methyltransferase, structural genomics, JCSG, protein struc initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.51 E-value=1.6e-13 Score=124.44 Aligned_cols=146 Identities=21% Similarity=0.118 Sum_probs=104.3
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccc
Q 015966 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (397)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~ 249 (397)
.|...++.|.+..| +.+|||+|||+|+++..|+++ +|+|+|..|+..++-.
T Consensus 34 ~~~~~~~~l~~~~~------~~~vLDiG~G~G~~~~~l~~~----~~vD~s~~~~~~a~~~------------------- 84 (219)
T 1vlm_A 34 AYLSELQAVKCLLP------EGRGVEIGVGTGRFAVPLKIK----IGVEPSERMAEIARKR------------------- 84 (219)
T ss_dssp HHHHHHHHHHHHCC------SSCEEEETCTTSTTHHHHTCC----EEEESCHHHHHHHHHT-------------------
T ss_pred hHHHHHHHHHHhCC------CCcEEEeCCCCCHHHHHHHHH----hccCCCHHHHHHHHhc-------------------
Confidence 35566777777654 458999999999999999987 9999999999765410
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcE
Q 015966 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGV 329 (397)
Q Consensus 250 Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~ 329 (397)
++.++.+|+.++. ...++||+|++...+....+...+++.+.++|||||+
T Consensus 85 ---------------------------~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~ 134 (219)
T 1vlm_A 85 ---------------------------GVFVLKGTAENLP---LKDESFDFALMVTTICFVDDPERALKEAYRILKKGGY 134 (219)
T ss_dssp ---------------------------TCEEEECBTTBCC---SCTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEE
T ss_pred ---------------------------CCEEEEcccccCC---CCCCCeeEEEEcchHhhccCHHHHHHHHHHHcCCCcE
Confidence 1456778876642 2357899999887655556678999999999999999
Q ss_pred EEEecCCcch-----hhhc-cCC-CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 330 WINLGPLLYH-----FADL-YGQ-EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 330 wIN~GPLlYh-----~~d~-~g~-~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
+|-..|.... +... .+. .......++.+++.++++++||++++..
T Consensus 135 l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~Gf~~~~~~ 186 (219)
T 1vlm_A 135 LIVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKVV 186 (219)
T ss_dssp EEEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEEE
T ss_pred EEEEEeCCccHHHHHHHHHhcCcchhcccccCCHHHHHHHHHHCCCeEEEEe
Confidence 9953322111 1100 000 0011234799999999999999998844
|
| >3ggd_A SAM-dependent methyltransferase; YP_325210.1, structural GEN joint center for structural genomics, JCSG; HET: SAH; 2.11A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.9e-13 Score=125.28 Aligned_cols=154 Identities=12% Similarity=-0.052 Sum_probs=101.6
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCC
Q 015966 175 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLS 254 (397)
Q Consensus 175 l~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s 254 (397)
...+...++.. .++.+|||+|||+|+++..||++|..|+|+|+|..|+..++-.+.
T Consensus 44 ~~~~~~~~~~~--~~~~~vLD~GcG~G~~~~~la~~~~~v~gvD~s~~~~~~a~~~~~---------------------- 99 (245)
T 3ggd_A 44 VVDLPRFELLF--NPELPLIDFACGNGTQTKFLSQFFPRVIGLDVSKSALEIAAKENT---------------------- 99 (245)
T ss_dssp HHHHHHHTTTS--CTTSCEEEETCTTSHHHHHHHHHSSCEEEEESCHHHHHHHHHHSC----------------------
T ss_pred HHHHHHHhhcc--CCCCeEEEEcCCCCHHHHHHHHhCCCEEEEECCHHHHHHHHHhCc----------------------
Confidence 34444444332 256799999999999999999999999999999999987652110
Q ss_pred cccCccccccCCCCCCCCCCCCcceeEecccccccCCC-C-CCCCccEEEEeeccCCh--hhHHHHHHHHHHhccCCcEE
Q 015966 255 DSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDP-S-QVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVW 330 (397)
Q Consensus 255 ~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~-~-~~~~fD~VvT~FFIDta--~Ni~~yi~~I~~~LKPGG~w 330 (397)
..++.++.+|+.++.... . ....||+|++...+... .+...+++.++++|||||++
T Consensus 100 --------------------~~~~~~~~~d~~~~~~~~~~~~~~~~d~v~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l 159 (245)
T 3ggd_A 100 --------------------AANISYRLLDGLVPEQAAQIHSEIGDANIYMRTGFHHIPVEKRELLGQSLRILLGKQGAM 159 (245)
T ss_dssp --------------------CTTEEEEECCTTCHHHHHHHHHHHCSCEEEEESSSTTSCGGGHHHHHHHHHHHHTTTCEE
T ss_pred --------------------ccCceEEECcccccccccccccccCccEEEEcchhhcCCHHHHHHHHHHHHHHcCCCCEE
Confidence 012678888987742200 0 01248999987654433 37889999999999999986
Q ss_pred EEe--cCCc--c--hhhhccCCCC----------CccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 331 INL--GPLL--Y--HFADLYGQED----------EMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 331 IN~--GPLl--Y--h~~d~~g~~~----------~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
+-+ ++-- + ......+..+ .....++.+++.+++ .||+++...
T Consensus 160 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--aGf~~~~~~ 217 (245)
T 3ggd_A 160 YLIELGTGCIDFFNSLLEKYGQLPYELLLVMEHGIRPGIFTAEDIELYF--PDFEILSQG 217 (245)
T ss_dssp EEEEECTTHHHHHHHHHHHHSSCCHHHHHHHTTTCCCCCCCHHHHHHHC--TTEEEEEEE
T ss_pred EEEeCCccccHHHHHHHhCCCCCchhhhhccccCCCCCccCHHHHHHHh--CCCEEEecc
Confidence 632 2110 0 0000001111 012247999999999 899999865
|
| >3grz_A L11 mtase, ribosomal protein L11 methyltransferase; methylase, SAM-binding domain, PSI-2, nysgxrc; 2.00A {Lactobacillus delbrueckii subsp} | Back alignment and structure |
|---|
Probab=99.51 E-value=1.5e-13 Score=122.97 Aligned_cols=134 Identities=16% Similarity=0.195 Sum_probs=101.2
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
.+++.|.+..+ ++.+|||+|||+|+++..|++.|. .|+|+|+|..|+..++..+...
T Consensus 49 ~~~~~l~~~~~-----~~~~vLDiG~G~G~~~~~l~~~~~~~v~~vD~s~~~~~~a~~~~~~~----------------- 106 (205)
T 3grz_A 49 LAMLGIERAMV-----KPLTVADVGTGSGILAIAAHKLGAKSVLATDISDESMTAAEENAALN----------------- 106 (205)
T ss_dssp HHHHHHHHHCS-----SCCEEEEETCTTSHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHhcc-----CCCEEEEECCCCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc-----------------
Confidence 46666666543 467999999999999999999988 8999999999998776322110
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
. . .++.+..+|+.+.. .++||+|++...+ +.+..+++.++++|||||+++
T Consensus 107 ---------~------------~-~~v~~~~~d~~~~~-----~~~fD~i~~~~~~---~~~~~~l~~~~~~L~~gG~l~ 156 (205)
T 3grz_A 107 ---------G------------I-YDIALQKTSLLADV-----DGKFDLIVANILA---EILLDLIPQLDSHLNEDGQVI 156 (205)
T ss_dssp ---------T------------C-CCCEEEESSTTTTC-----CSCEEEEEEESCH---HHHHHHGGGSGGGEEEEEEEE
T ss_pred ---------C------------C-CceEEEeccccccC-----CCCceEEEECCcH---HHHHHHHHHHHHhcCCCCEEE
Confidence 0 0 11678889987642 3789999987543 446788999999999999998
Q ss_pred EecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 332 NLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 332 N~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
-.++ ..-+.+++.+++++.||++++..
T Consensus 157 ~~~~----------------~~~~~~~~~~~~~~~Gf~~~~~~ 183 (205)
T 3grz_A 157 FSGI----------------DYLQLPKIEQALAENSFQIDLKM 183 (205)
T ss_dssp EEEE----------------EGGGHHHHHHHHHHTTEEEEEEE
T ss_pred EEec----------------CcccHHHHHHHHHHcCCceEEee
Confidence 4221 12257899999999999998743
|
| >3ofk_A Nodulation protein S; NODS, N-methyltransferase, SAH, SAM, NOD factor, fixation, symbiosis, alpha/beta structure; HET: SAH; 1.85A {Bradyrhizobium SP} PDB: 3ofj_A* | Back alignment and structure |
|---|
Probab=99.51 E-value=1.4e-13 Score=123.63 Aligned_cols=130 Identities=10% Similarity=0.042 Sum_probs=93.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|+++..|+++|..|+|+|+|..|+..++-.+..
T Consensus 51 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~----------------------------------- 95 (216)
T 3ofk_A 51 AVSNGLEIGCAAGAFTEKLAPHCKRLTVIDVMPRAIGRACQRTKR----------------------------------- 95 (216)
T ss_dssp SEEEEEEECCTTSHHHHHHGGGEEEEEEEESCHHHHHHHHHHTTT-----------------------------------
T ss_pred CCCcEEEEcCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHhccc-----------------------------------
Confidence 567999999999999999999999999999999999876622100
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEee---ccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccC
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g 345 (397)
..++.++.+|+.++. ..++||+|++.. ++.....+..+++.++++|||||++|-.-|.--.... .
T Consensus 96 ------~~~~~~~~~d~~~~~----~~~~fD~v~~~~~l~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~-~- 163 (216)
T 3ofk_A 96 ------WSHISWAATDILQFS----TAELFDLIVVAEVLYYLEDMTQMRTAIDNMVKMLAPGGHLVFGSARDATCRR-W- 163 (216)
T ss_dssp ------CSSEEEEECCTTTCC----CSCCEEEEEEESCGGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHH-T-
T ss_pred ------CCCeEEEEcchhhCC----CCCCccEEEEccHHHhCCCHHHHHHHHHHHHHHcCCCCEEEEEecCCCcchh-h-
Confidence 013788999988764 258899999875 3455556678999999999999999943222111111 0
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEE
Q 015966 346 QEDEMSIELSLEDVKRVALHYGFEFE 371 (397)
Q Consensus 346 ~~~~~~ieLS~EEl~~ll~~~GFeii 371 (397)
......+.+..++.. +|..+
T Consensus 164 -----~~~~~~~~~~~~~~~-~~~~~ 183 (216)
T 3ofk_A 164 -----GHVAGAETVITILTE-ALTEV 183 (216)
T ss_dssp -----TCSCCHHHHHHHHHH-HSEEE
T ss_pred -----hhhhhHHHHHHHHHh-hccce
Confidence 113566777777765 35544
|
| >3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.9e-13 Score=127.77 Aligned_cols=145 Identities=10% Similarity=0.051 Sum_probs=100.6
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|+++..||.. |..|+|+|+|..|+..++-.....
T Consensus 118 ~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~------------------------------- 166 (305)
T 3ocj_A 118 PGCVVASVPCGWMSELLALDYSACPGVQLVGIDYDPEALDGATRLAAGH------------------------------- 166 (305)
T ss_dssp TTCEEEETTCTTCHHHHTSCCTTCTTCEEEEEESCHHHHHHHHHHHTTS-------------------------------
T ss_pred CCCEEEEecCCCCHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHhc-------------------------------
Confidence 5679999999999999999622 679999999999998776322100
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee---ccCChhhHHHHHHHHHHhccCCcEEEEec----CC--
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWINLG----PL-- 336 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yi~~I~~~LKPGG~wIN~G----PL-- 336 (397)
....++.++.+|+.++- .. ++||+|++.. ++........+++.++++|||||++|-.. |.
T Consensus 167 -------~~~~~v~~~~~d~~~~~---~~-~~fD~v~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~~~~~~~~~~ 235 (305)
T 3ocj_A 167 -------ALAGQITLHRQDAWKLD---TR-EGYDLLTSNGLNIYEPDDARVTELYRRFWQALKPGGALVTSFLTPPPALS 235 (305)
T ss_dssp -------TTGGGEEEEECCGGGCC---CC-SCEEEEECCSSGGGCCCHHHHHHHHHHHHHHEEEEEEEEEECCCCCTTTC
T ss_pred -------CCCCceEEEECchhcCC---cc-CCeEEEEECChhhhcCCHHHHHHHHHHHHHhcCCCeEEEEEecCCCCccc
Confidence 11123788999998853 22 8999999864 34455556679999999999999999421 11
Q ss_pred -cchhh-hccC--------------CCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 337 -LYHFA-DLYG--------------QEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 337 -lYh~~-d~~g--------------~~~~~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
.+.|. +... ........++.+++.++++++||++++...
T Consensus 236 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~v~~~~ 290 (305)
T 3ocj_A 236 PDSPWDMQAIDPHDLQLQQLVFTRLIQPRWNALRTHAQTRAQLEEAGFTDLRFED 290 (305)
T ss_dssp TTCCCCGGGSCHHHHHHHHHHHHHTTCCSCCCCCCHHHHHHHHHHTTCEEEEEEC
T ss_pred ccccceeeccccchhhhhhhHHHHHHhhhhhccCCHHHHHHHHHHCCCEEEEEEc
Confidence 11111 0000 000011237999999999999999988664
|
| >4e2x_A TCAB9; kijanose, tetronitrose, tetradeoxy sugar, sugar methylation, transferase; HET: SAH TYD; 1.40A {Micromonospora chalcea} PDB: 3ndi_A* 3ndj_A* 4e32_A* 4e33_A* 4e2y_A* 4e31_A* 4e2w_A* 4e2z_A* 4e30_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=8.4e-14 Score=138.63 Aligned_cols=157 Identities=18% Similarity=0.112 Sum_probs=106.3
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
..+.+.+.+.++. .++.+|||+|||+|+++..|+++|+.|+|+|+|..|+..|+-. .
T Consensus 93 ~~~~~~l~~~~~~---~~~~~VLDiGcG~G~~~~~l~~~g~~v~gvD~s~~~~~~a~~~-------~------------- 149 (416)
T 4e2x_A 93 AMLARDFLATELT---GPDPFIVEIGCNDGIMLRTIQEAGVRHLGFEPSSGVAAKAREK-------G------------- 149 (416)
T ss_dssp HHHHHHHHHTTTC---SSSCEEEEETCTTTTTHHHHHHTTCEEEEECCCHHHHHHHHTT-------T-------------
T ss_pred HHHHHHHHHHhCC---CCCCEEEEecCCCCHHHHHHHHcCCcEEEECCCHHHHHHHHHc-------C-------------
Confidence 3455666665542 2567999999999999999999999999999999999766510 0
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
++.. ...+..++..++. ..+++||+|++...+...+++..+++.++++|||||+++
T Consensus 150 ------------~~~~---------~~~~~~~~~~~l~---~~~~~fD~I~~~~vl~h~~d~~~~l~~~~r~LkpgG~l~ 205 (416)
T 4e2x_A 150 ------------IRVR---------TDFFEKATADDVR---RTEGPANVIYAANTLCHIPYVQSVLEGVDALLAPDGVFV 205 (416)
T ss_dssp ------------CCEE---------CSCCSHHHHHHHH---HHHCCEEEEEEESCGGGCTTHHHHHHHHHHHEEEEEEEE
T ss_pred ------------CCcc---------eeeechhhHhhcc---cCCCCEEEEEECChHHhcCCHHHHHHHHHHHcCCCeEEE
Confidence 0000 0011223333321 124789999998876666688999999999999999999
Q ss_pred EecCCcchh-hh-ccC-CCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 332 NLGPLLYHF-AD-LYG-QEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 332 N~GPLlYh~-~d-~~g-~~~~~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
-.-|..-.. .. .+. ...+....+|.+++.+++++.||+++....
T Consensus 206 i~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~ll~~aGf~~~~~~~ 252 (416)
T 4e2x_A 206 FEDPYLGDIVAKTSFDQIFDEHFFLFSATSVQGMAQRCGFELVDVQR 252 (416)
T ss_dssp EEEECHHHHHHHTCGGGCSTTCCEECCHHHHHHHHHHTTEEEEEEEE
T ss_pred EEeCChHHhhhhcchhhhhhhhhhcCCHHHHHHHHHHcCCEEEEEEE
Confidence 543321111 00 000 001123358999999999999999988553
|
| >1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=7e-14 Score=128.52 Aligned_cols=151 Identities=17% Similarity=0.093 Sum_probs=97.8
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
+++..+.+..+. ++.+|||+|||+|.++..|++.|. .|+|+|+|..|+..|+-... .
T Consensus 48 ~~~~~l~~~~~~----~~~~vLDiGcGtG~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~---~--------------- 105 (236)
T 1zx0_A 48 PYMHALAAAASS----KGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAP---R--------------- 105 (236)
T ss_dssp HHHHHHHHHHTT----TCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGG---G---------------
T ss_pred HHHHHHHhhcCC----CCCeEEEEeccCCHHHHHHHhcCCCeEEEEcCCHHHHHHHHHHHH---h---------------
Confidence 355555555432 567999999999999999999887 89999999999987762111 0
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEE-eeccC----ChhhHHHHHHHHHHhccC
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT-CFFID----TAHNIVEYIEIISRILKD 326 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT-~FFID----ta~Ni~~yi~~I~~~LKP 326 (397)
.+.++.++.+|+.++.. +..+++||+|++ .|-+. ...+...+++.++++|||
T Consensus 106 ----------------------~~~~v~~~~~d~~~~~~-~~~~~~fD~V~~d~~~~~~~~~~~~~~~~~l~~~~r~Lkp 162 (236)
T 1zx0_A 106 ----------------------QTHKVIPLKGLWEDVAP-TLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKP 162 (236)
T ss_dssp ----------------------CSSEEEEEESCHHHHGG-GSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEE
T ss_pred ----------------------cCCCeEEEecCHHHhhc-ccCCCceEEEEECCcccchhhhhhhhHHHHHHHHHHhcCC
Confidence 01236788999887621 223589999998 44321 223455779999999999
Q ss_pred CcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEE
Q 015966 327 GGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEF 370 (397)
Q Consensus 327 GG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFei 370 (397)
||+++-+-.. ++.......-........++....+.+.||+.
T Consensus 163 gG~l~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~aGF~~ 204 (236)
T 1zx0_A 163 GGVLTYCNLT--SWGELMKSKYSDITIMFEETQVPALLEAGFRR 204 (236)
T ss_dssp EEEEEECCHH--HHHHHTTTTCSCHHHHHHHHTHHHHHHTTCCG
T ss_pred CeEEEEEecC--cHHHhhchhhhhhhhhccHHHHHHHHHCCCCC
Confidence 9999853211 11110000000011223456667788899984
|
| >3m33_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MCSG, midwest center for structural genomics; 2.19A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.49 E-value=9.9e-14 Score=126.93 Aligned_cols=117 Identities=13% Similarity=0.118 Sum_probs=92.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++-. .
T Consensus 48 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~---------------------------------~---- 90 (226)
T 3m33_A 48 PQTRVLEAGCGHGPDAARFGPQAARWAAYDFSPELLKLARAN---------------------------------A---- 90 (226)
T ss_dssp TTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHH---------------------------------C----
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHh---------------------------------C----
Confidence 567999999999999999999999999999999999766511 0
Q ss_pred CCCCCCCCcceeEecccccccCCCCC-CCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCC
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQ-VGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 347 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~-~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~ 347 (397)
.++.++.+|+.+.. |.. +++||+|++. .+....++.++++|||||+++..+
T Consensus 91 -------~~~~~~~~d~~~~~--~~~~~~~fD~v~~~------~~~~~~l~~~~~~LkpgG~l~~~~------------- 142 (226)
T 3m33_A 91 -------PHADVYEWNGKGEL--PAGLGAPFGLIVSR------RGPTSVILRLPELAAPDAHFLYVG------------- 142 (226)
T ss_dssp -------TTSEEEECCSCSSC--CTTCCCCEEEEEEE------SCCSGGGGGHHHHEEEEEEEEEEE-------------
T ss_pred -------CCceEEEcchhhcc--CCcCCCCEEEEEeC------CCHHHHHHHHHHHcCCCcEEEEeC-------------
Confidence 12677888985532 233 5799999987 245578999999999999999211
Q ss_pred CCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 348 DEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 348 ~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
-..+.+++.+++.+.||++....
T Consensus 143 ----~~~~~~~~~~~l~~~Gf~~~~~~ 165 (226)
T 3m33_A 143 ----PRLNVPEVPERLAAVGWDIVAED 165 (226)
T ss_dssp ----SSSCCTHHHHHHHHTTCEEEEEE
T ss_pred ----CcCCHHHHHHHHHHCCCeEEEEE
Confidence 13466789999999999998744
|
| >2vdw_A Vaccinia virus capping enzyme D1 subunit; nucleotidyltransferase, S-adenosyl-L-methionine, RNA metabolism, mRNA processing, methyltransferase, poxvirus; HET: SAH; 2.70A {Vaccinia virus} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.5e-13 Score=130.00 Aligned_cols=152 Identities=13% Similarity=0.030 Sum_probs=93.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|+++..+++.| ..|+|+|+|..||..|+-..... . .. .+.+.+
T Consensus 48 ~~~~VLDlGCG~G~~l~~~~~~~~~~v~GiD~S~~~l~~A~~~~~~~---~-~~---------------~~~~~~----- 103 (302)
T 2vdw_A 48 NKRKVLAIDFGNGADLEKYFYGEIALLVATDPDADAIARGNERYNKL---N-SG---------------IKTKYY----- 103 (302)
T ss_dssp SCCEEEETTCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHH---C-C-------------------CCC-----
T ss_pred CCCeEEEEecCCcHhHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhc---c-cc---------------cccccc-----
Confidence 46799999999999777766664 78999999999999887332110 0 00 000000
Q ss_pred CCCCCCCCCcceeEeccc------ccccCCCCCCCCccEEEEeecc----CChhhHHHHHHHHHHhccCCcEEEEecCC-
Q 015966 268 HPASAGITEGFSMCGGDF------VEVYSDPSQVGAWDAVVTCFFI----DTAHNIVEYIEIISRILKDGGVWINLGPL- 336 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF------~ely~~~~~~~~fD~VvT~FFI----Dta~Ni~~yi~~I~~~LKPGG~wIN~GPL- 336 (397)
.+.+.++|+ .++.. +...++||+|++.|-+ ++. ++..+|+.++++|||||++|-.-|-
T Consensus 104 ---------~~~f~~~d~~~d~~~~~l~~-~~~~~~FD~V~~~~~lhy~~~~~-~~~~~l~~~~r~LkpGG~~i~~~~~~ 172 (302)
T 2vdw_A 104 ---------KFDYIQETIRSDTFVSSVRE-VFYFGKFNIIDWQFAIHYSFHPR-HYATVMNNLSELTASGGKVLITTMDG 172 (302)
T ss_dssp ---------EEEEEECCTTSSSHHHHHHT-TCCSSCEEEEEEESCGGGTCSTT-THHHHHHHHHHHEEEEEEEEEEEECH
T ss_pred ---------ccchhhhhcccchhhhhhhc-cccCCCeeEEEECchHHHhCCHH-HHHHHHHHHHHHcCCCCEEEEEeCCH
Confidence 133445554 22211 1124799999876532 333 5679999999999999999953221
Q ss_pred ---cchhh-------------h----------c----c---C-CCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 337 ---LYHFA-------------D----------L----Y---G-QEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 337 ---lYh~~-------------d----------~----~---g-~~~~~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
.+.+. . + + + ..+-...-++.++|+++++++||+++....
T Consensus 173 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~v~~~el~~l~~~~Gl~lv~~~~ 245 (302)
T 2vdw_A 173 DKLSKLTDKKTFIIHKNLPSSENYMSVEKIADDRIVVYNPSTMSTPMTEYIIKKNDIVRVFNEYGFVLVDNVD 245 (302)
T ss_dssp HHHTTCCSCEEEECCSSSCTTTSEEEECEEETTEEEEBCTTTBSSCEEEECCCHHHHHHHHHHTTEEEEEEEE
T ss_pred HHHHHHHhcCCcccccccccccceeeeccccccccceeeccccCCCceeeeeEHHHHHHHHHHCCCEEEEecC
Confidence 11000 0 0 0 0 000001236789999999999999988653
|
| >3g07_A 7SK snRNA methylphosphate capping enzyme; structural genomics consortium (SGC), methyltransferase, phosphoprotein, S-adenosyl-L-methionine; HET: SAM; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.48 E-value=9.6e-14 Score=132.76 Aligned_cols=176 Identities=15% Similarity=0.208 Sum_probs=105.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhccccc------------------------Ccccc
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETA------------------------GEWNI 242 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~------------------------~~~~I 242 (397)
++.+|||+|||+|+++..||++ +..|+|+|+|..|+..|+-.+...... ....-
T Consensus 46 ~~~~VLDiGCG~G~~~~~la~~~~~~~v~gvDis~~~i~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (292)
T 3g07_A 46 RGRDVLDLGCNVGHLTLSIACKWGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSC 125 (292)
T ss_dssp TTSEEEEESCTTCHHHHHHHHHTCCSEEEEEESCHHHHHHHHHTC-----------------------------------
T ss_pred CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHhhhhhhcccccccccccccccccccccccccccc
Confidence 4679999999999999999998 789999999999999887443211000 00011
Q ss_pred ccccccccCCCCcccCccccccCCCCCC---CCCCCCcceeEecccccccC--CCCCCCCccEEEEeecc---C---Chh
Q 015966 243 YPWIHSNCNSLSDSDQLRPVSIPDIHPA---SAGITEGFSMCGGDFVEVYS--DPSQVGAWDAVVTCFFI---D---TAH 311 (397)
Q Consensus 243 yPfi~~~Sn~~s~~~qlr~v~iPDv~p~---~~~~~~~ls~~~GDF~ely~--~~~~~~~fD~VvT~FFI---D---ta~ 311 (397)
||..... ...++..|..... ....+.++.+..+|+..... .+...++||+|++...+ . ...
T Consensus 126 ~p~~~~~--------~~g~~~~p~~~~~~~~~~~~p~~v~f~~~d~~~~~~~~~~~~~~~fD~I~~~~vl~~ihl~~~~~ 197 (292)
T 3g07_A 126 FPASLTA--------SRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQTPEYDVVLCLSLTKWVHLNWGDE 197 (292)
T ss_dssp ------------------------CCSSTTCCSSTTTTEEEEECCCCCSSHHHHTTCCCCEEEEEEESCHHHHHHHHHHH
T ss_pred ccchhhh--------ccCccccccccccccccccccccceEEecccccCccccccccCCCcCEEEEChHHHHhhhcCCHH
Confidence 2211100 0111222221110 11233579999999875320 01235899999987543 2 444
Q ss_pred hHHHHHHHHHHhccCCcEEEEecCCcch-hhhccCCC-----CCccccCCHHHHHHHHHh--CCCEEEEE
Q 015966 312 NIVEYIEIISRILKDGGVWINLGPLLYH-FADLYGQE-----DEMSIELSLEDVKRVALH--YGFEFEKE 373 (397)
Q Consensus 312 Ni~~yi~~I~~~LKPGG~wIN~GPLlYh-~~d~~g~~-----~~~~ieLS~EEl~~ll~~--~GFeii~e 373 (397)
++.++|+.++++|||||++|- .|..|. |....... .-..+.+..+++..++.+ +||+.++.
T Consensus 198 ~~~~~l~~~~~~LkpGG~lil-~~~~~~~y~~~~~~~~~~~~~~~~~~~~p~~~~~~L~~~~~GF~~~~~ 266 (292)
T 3g07_A 198 GLKRMFRRIYRHLRPGGILVL-EPQPWSSYGKRKTLTETIYKNYYRIQLKPEQFSSYLTSPDVGFSSYEL 266 (292)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE-ECCCHHHHHTTTTSCHHHHHHHHHCCCCGGGHHHHHTSTTTCCCEEEE
T ss_pred HHHHHHHHHHHHhCCCcEEEE-ecCCchhhhhhhcccHHHHhhhhcEEEcHHHHHHHHHhcCCCceEEEE
Confidence 788999999999999999994 333332 11100000 001356788999999998 99977664
|
| >4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A | Back alignment and structure |
|---|
Probab=99.47 E-value=1.8e-13 Score=135.97 Aligned_cols=150 Identities=19% Similarity=0.165 Sum_probs=102.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccc-ccc
Q 015966 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRP-VSI 264 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~-v~i 264 (397)
++.+|||+|||+|+++..|+++ +..|+|+|+|..|+..++-.+...... ..+ ..
T Consensus 83 ~~~~VLDlGcG~G~~~~~la~~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~---------------------~~g~~~- 140 (383)
T 4fsd_A 83 EGATVLDLGCGTGRDVYLASKLVGEHGKVIGVDMLDNQLEVARKYVEYHAEK---------------------FFGSPS- 140 (383)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHTTTCEEEEEECCHHHHHHHHHTHHHHHHH---------------------HHSSTT-
T ss_pred CCCEEEEecCccCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhhhh---------------------cccccC-
Confidence 5779999999999999999986 679999999999998776322110000 000 00
Q ss_pred CCCCCCCCCCCCcceeEecccccccCC---CCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCc----
Q 015966 265 PDIHPASAGITEGFSMCGGDFVEVYSD---PSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLL---- 337 (397)
Q Consensus 265 PDv~p~~~~~~~~ls~~~GDF~ely~~---~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLl---- 337 (397)
..++.++.+|+.++... +...++||+|++...+....+...+|+.++++|||||+++-..+..
T Consensus 141 ----------~~~v~~~~~d~~~l~~~~~~~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~ 210 (383)
T 4fsd_A 141 ----------RSNVRFLKGFIENLATAEPEGVPDSSVDIVISNCVCNLSTNKLALFKEIHRVLRDGGELYFSDVYADRRL 210 (383)
T ss_dssp ----------CCCEEEEESCTTCGGGCBSCCCCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEESSCC
T ss_pred ----------CCceEEEEccHHHhhhcccCCCCCCCEEEEEEccchhcCCCHHHHHHHHHHHcCCCCEEEEEEecccccc
Confidence 12378899998875211 2346799999998766655678899999999999999998421110
Q ss_pred c-hhhhc---cCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 338 Y-HFADL---YGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 338 Y-h~~d~---~g~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
. ..... .+.. ..-.++.+++.++++++||+.++
T Consensus 211 ~~~~~~~~~~~~~~--~~~~~~~~~~~~ll~~aGF~~v~ 247 (383)
T 4fsd_A 211 SEAAQQDPILYGEC--LGGALYLEDFRRLVAEAGFRDVR 247 (383)
T ss_dssp CHHHHHCHHHHHTT--CTTCCBHHHHHHHHHHTTCCCEE
T ss_pred CHhHhhhHHHhhcc--cccCCCHHHHHHHHHHCCCceEE
Confidence 0 00000 0000 11247889999999999998765
|
| >3mti_A RRNA methylase; SAM-dependent, PSI, MCSG, structural genomics, midwest cente structural genomics, protein structure initiative; 1.95A {Streptococcus thermophilus} PDB: 3lby_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.6e-13 Score=118.37 Aligned_cols=138 Identities=14% Similarity=0.023 Sum_probs=90.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|+++..||++|..|+|+|+|..|+..|+..+... .
T Consensus 22 ~~~~vLDiGcG~G~~~~~la~~~~~v~~vD~s~~~l~~a~~~~~~~--------------------------~------- 68 (185)
T 3mti_A 22 DESIVVDATMGNGNDTAFLAGLSKKVYAFDVQEQALGKTSQRLSDL--------------------------G------- 68 (185)
T ss_dssp TTCEEEESCCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHH--------------------------T-------
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHc--------------------------C-------
Confidence 5679999999999999999999999999999999998877332110 0
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-ccC--------ChhhHHHHHHHHHHhccCCcEEEEecCCcch
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FID--------TAHNIVEYIEIISRILKDGGVWINLGPLLYH 339 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-FID--------ta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh 339 (397)
. .++.++.+|+.++... ..++||+|+..+ |+. ...+....++.++++|||||+++-. .|.
T Consensus 69 -----~-~~v~~~~~~~~~l~~~--~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~---~~~ 137 (185)
T 3mti_A 69 -----I-ENTELILDGHENLDHY--VREPIRAAIFNLGYLPSADKSVITKPHTTLEAIEKILDRLEVGGRLAIM---IYY 137 (185)
T ss_dssp -----C-CCEEEEESCGGGGGGT--CCSCEEEEEEEEC-----------CHHHHHHHHHHHHHHEEEEEEEEEE---EC-
T ss_pred -----C-CcEEEEeCcHHHHHhh--ccCCcCEEEEeCCCCCCcchhcccChhhHHHHHHHHHHhcCCCcEEEEE---EeC
Confidence 0 1256677777665321 257899998763 433 4456678899999999999999852 232
Q ss_pred hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 340 FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 340 ~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
.... + . ...-...++.+.+...+|.+.+...
T Consensus 138 ~~~~-~-~---~~~~~~~~~~~~l~~~~~~~~~~~~ 168 (185)
T 3mti_A 138 GHDG-G-D---MEKDAVLEYVIGLDQRVFTAMLYQP 168 (185)
T ss_dssp -------C---HHHHHHHHHHHHSCTTTEEEEEEEE
T ss_pred CCCC-C-H---HHHHHHHHHHHhCCCceEEEEEehh
Confidence 1110 0 0 0011223333444456798887654
|
| >2pxx_A Uncharacterized protein MGC2408; structural genomics consortium, SGC, methyltransferase, LOC84291, transferase; HET: SAH; 1.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.47 E-value=2.2e-13 Score=120.99 Aligned_cols=114 Identities=19% Similarity=0.260 Sum_probs=86.7
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccc
Q 015966 171 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (397)
Q Consensus 171 y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~ 249 (397)
+..+.+.|.++++ ++.+|||+|||+|+++..|+++|+ .|+|+|+|..|+..++-....
T Consensus 29 ~~~~~~~l~~~~~-----~~~~vLdiGcG~G~~~~~l~~~~~~~v~~~D~s~~~~~~a~~~~~~---------------- 87 (215)
T 2pxx_A 29 FSSFRALLEPELR-----PEDRILVLGCGNSALSYELFLGGFPNVTSVDYSSVVVAAMQACYAH---------------- 87 (215)
T ss_dssp HHHHHHHHGGGCC-----TTCCEEEETCTTCSHHHHHHHTTCCCEEEEESCHHHHHHHHHHTTT----------------
T ss_pred HHHHHHHHHHhcC-----CCCeEEEECCCCcHHHHHHHHcCCCcEEEEeCCHHHHHHHHHhccc----------------
Confidence 4456777776653 567999999999999999999998 899999999999876521100
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC---------------ChhhHH
Q 015966 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID---------------TAHNIV 314 (397)
Q Consensus 250 Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID---------------ta~Ni~ 314 (397)
..++.+..+|+.++- ...++||+|++...++ ...++.
T Consensus 88 -------------------------~~~i~~~~~d~~~~~---~~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (215)
T 2pxx_A 88 -------------------------VPQLRWETMDVRKLD---FPSASFDVVLEKGTLDALLAGERDPWTVSSEGVHTVD 139 (215)
T ss_dssp -------------------------CTTCEEEECCTTSCC---SCSSCEEEEEEESHHHHHTTTCSCTTSCCHHHHHHHH
T ss_pred -------------------------CCCcEEEEcchhcCC---CCCCcccEEEECcchhhhccccccccccccchhHHHH
Confidence 012677888987752 2357899999865332 134678
Q ss_pred HHHHHHHHhccCCcEEEEe
Q 015966 315 EYIEIISRILKDGGVWINL 333 (397)
Q Consensus 315 ~yi~~I~~~LKPGG~wIN~ 333 (397)
.+++.++++|||||++|-.
T Consensus 140 ~~l~~~~~~LkpgG~li~~ 158 (215)
T 2pxx_A 140 QVLSEVSRVLVPGGRFISM 158 (215)
T ss_dssp HHHHHHHHHEEEEEEEEEE
T ss_pred HHHHHHHHhCcCCCEEEEE
Confidence 9999999999999999953
|
| >3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.47 E-value=1.5e-12 Score=116.64 Aligned_cols=123 Identities=17% Similarity=0.002 Sum_probs=93.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++..+|++| ..|+|+|+|..|+..++-.+... +
T Consensus 40 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------------------~----- 88 (204)
T 3e05_A 40 DDLVMWDIGAGSASVSIEASNLMPNGRIFALERNPQYLGFIRDNLKKF--------------------------V----- 88 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHHCTTSEEEEEECCHHHHHHHHHHHHHH--------------------------T-----
T ss_pred CCCEEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHh--------------------------C-----
Confidence 56799999999999999999998 89999999999998776322110 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCC
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~ 346 (397)
. .++.++.+|+.+... ..+.||+|+....+. ++.++++.+.++|||||+++-..+.
T Consensus 89 -------~-~~v~~~~~d~~~~~~---~~~~~D~i~~~~~~~---~~~~~l~~~~~~LkpgG~l~~~~~~---------- 144 (204)
T 3e05_A 89 -------A-RNVTLVEAFAPEGLD---DLPDPDRVFIGGSGG---MLEEIIDAVDRRLKSEGVIVLNAVT---------- 144 (204)
T ss_dssp -------C-TTEEEEECCTTTTCT---TSCCCSEEEESCCTT---CHHHHHHHHHHHCCTTCEEEEEECB----------
T ss_pred -------C-CcEEEEeCChhhhhh---cCCCCCEEEECCCCc---CHHHHHHHHHHhcCCCeEEEEEecc----------
Confidence 0 136788899876543 136799998765443 5779999999999999999953221
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 347 EDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 347 ~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
.-+.+++.+++++.||++..
T Consensus 145 ------~~~~~~~~~~l~~~g~~~~~ 164 (204)
T 3e05_A 145 ------LDTLTKAVEFLEDHGYMVEV 164 (204)
T ss_dssp ------HHHHHHHHHHHHHTTCEEEE
T ss_pred ------cccHHHHHHHHHHCCCceeE
Confidence 12567889999999995544
|
| >3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.3e-13 Score=122.86 Aligned_cols=148 Identities=9% Similarity=0.023 Sum_probs=93.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHH-HHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMIC-SSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~-s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|+++..||++ |..|+|+|+|..||.. ++...+... ...
T Consensus 27 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~~~~~a~~~~~-------------------------~~~-- 79 (218)
T 3mq2_A 27 YDDVVLDVGTGDGKHPYKVARQNPSRLVVALDADKSRMEKISAKAAAKPA-------------------------KGG-- 79 (218)
T ss_dssp SSEEEEEESCTTCHHHHHHHHHCTTEEEEEEESCGGGGHHHHHHHTSCGG-------------------------GTC--
T ss_pred CCCEEEEecCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhhh-------------------------hcC--
Confidence 5679999999999999999999 7899999999999973 332111100 000
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC-----ChhhHHHHHHHHHHhccCCcEEEE-ecCCcch
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID-----TAHNIVEYIEIISRILKDGGVWIN-LGPLLYH 339 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID-----ta~Ni~~yi~~I~~~LKPGG~wIN-~GPLlYh 339 (397)
..++.++.+|+.++. ...+. |.|+..+-.. ..++...+++.++++|||||+++- ++...|.
T Consensus 80 ---------~~~v~~~~~d~~~l~---~~~~~-d~v~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~ 146 (218)
T 3mq2_A 80 ---------LPNLLYLWATAERLP---PLSGV-GELHVLMPWGSLLRGVLGSSPEMLRGMAAVCRPGASFLVALNLHAWR 146 (218)
T ss_dssp ---------CTTEEEEECCSTTCC---SCCCE-EEEEEESCCHHHHHHHHTSSSHHHHHHHHTEEEEEEEEEEEEGGGBT
T ss_pred ---------CCceEEEecchhhCC---CCCCC-CEEEEEccchhhhhhhhccHHHHHHHHHHHcCCCcEEEEEecccccc
Confidence 013788999988753 22455 7776433110 111226889999999999999984 3322221
Q ss_pred hhh-ccCCCCCccccCCHHHHHHHHHhCCCEEEEEeec
Q 015966 340 FAD-LYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTI 376 (397)
Q Consensus 340 ~~d-~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i 376 (397)
... ..+..+........++++.++.++||+++..+..
T Consensus 147 ~~~~~~~~~~~~~~~~~~~~l~~~l~~aGf~i~~~~~~ 184 (218)
T 3mq2_A 147 PSVPEVGEHPEPTPDSADEWLAPRYAEAGWKLADCRYL 184 (218)
T ss_dssp TBCGGGTTCCCCCHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred ccccccccCCccchHHHHHHHHHHHHHcCCCceeeecc
Confidence 100 1111111111223566888999999999986644
|
| >3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-13 Score=128.85 Aligned_cols=153 Identities=16% Similarity=0.019 Sum_probs=99.2
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
|+.+.+.+..+ +++.+||++|||+|..+..||+. +-.|+|+|+|..|+..|+-... .
T Consensus 48 ~~m~~~a~~~~----~~G~rVLdiG~G~G~~~~~~~~~~~~~v~~id~~~~~~~~a~~~~~---~--------------- 105 (236)
T 3orh_A 48 PYMHALAAAAS----SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAP---R--------------- 105 (236)
T ss_dssp HHHHHHHHHHT----TTCEEEEEECCTTSHHHHHHTTSCEEEEEEEECCHHHHHHHHHHGG---G---------------
T ss_pred HHHHHHHHhhc----cCCCeEEEECCCccHHHHHHHHhCCcEEEEEeCCHHHHHHHHHHHh---h---------------
Confidence 56666666554 36789999999999999999987 4689999999999987763211 0
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEE-----eeccCChhhHHHHHHHHHHhccC
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT-----CFFIDTAHNIVEYIEIISRILKD 326 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT-----~FFIDta~Ni~~yi~~I~~~LKP 326 (397)
.+.++.++.||..++.. +..+++||+|+. .+-+....+...+++.++++|||
T Consensus 106 ----------------------~~~~~~~~~~~a~~~~~-~~~~~~FD~i~~D~~~~~~~~~~~~~~~~~~~e~~rvLkP 162 (236)
T 3orh_A 106 ----------------------QTHKVIPLKGLWEDVAP-TLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKP 162 (236)
T ss_dssp ----------------------CSSEEEEEESCHHHHGG-GSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEE
T ss_pred ----------------------CCCceEEEeehHHhhcc-cccccCCceEEEeeeecccchhhhcchhhhhhhhhheeCC
Confidence 01125677788766432 234678999863 12244556788999999999999
Q ss_pred CcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 327 GGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 327 GG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
||+|+-+...... +......+ .......+.+...|.++||+.+.
T Consensus 163 GG~l~f~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~L~eaGF~~~~ 206 (236)
T 3orh_A 163 GGVLTYCNLTSWG-ELMKSKYS-DITIMFEETQVPALLEAGFRREN 206 (236)
T ss_dssp EEEEEECCHHHHH-HHTTTTCS-CHHHHHHHHTHHHHHHHTCCGGG
T ss_pred CCEEEEEecCCch-hhhhhhhh-hhhhhhHHHHHHHHHHcCCeEEE
Confidence 9999853221111 00000000 01223456666677788998543
|
| >2avn_A Ubiquinone/menaquinone biosynthesis methyltransfe related protein; ubiquinone/menaquinone biosynthesis methyltransferase-relate protein; HET: SAI; 2.35A {Thermotoga maritima} SCOP: c.66.1.41 | Back alignment and structure |
|---|
Probab=99.45 E-value=5.6e-13 Score=124.20 Aligned_cols=175 Identities=18% Similarity=0.102 Sum_probs=113.4
Q ss_pred chhhHHHHHHHHHHhcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHH
Q 015966 143 ADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYY 222 (397)
Q Consensus 143 ~d~dkv~stL~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ 222 (397)
.+....-..+...+..|..... ....+..+.+.|.+.++ ++.+|||+|||+|+++..|+++|+.|+|+|+|..
T Consensus 15 ~~~~~~~~~~a~~Yd~~~~~~~--~~~~~~~~~~~l~~~~~-----~~~~vLDiGcG~G~~~~~l~~~~~~v~gvD~s~~ 87 (260)
T 2avn_A 15 LRSWEFYDRIARAYDSMYETPK--WKLYHRLIGSFLEEYLK-----NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKE 87 (260)
T ss_dssp CCHHHHHHHHHHHHGGGGCSHH--HHHHHHHHHHHHHHHCC-----SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHH
T ss_pred hhhcchhhHHHHHHHHhccccc--hhHHHHHHHHHHHHhcC-----CCCeEEEeCCCcCHHHHHHHHcCCeEEEEeCCHH
Confidence 4445555566666666653211 12234456677777664 4569999999999999999999999999999999
Q ss_pred HHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEE
Q 015966 223 MMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVV 302 (397)
Q Consensus 223 ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~Vv 302 (397)
|+..++-... . .+..+|+.++- ...++||+|+
T Consensus 88 ~l~~a~~~~~-------------------------------------------~--~~~~~d~~~~~---~~~~~fD~v~ 119 (260)
T 2avn_A 88 MLEVAREKGV-------------------------------------------K--NVVEAKAEDLP---FPSGAFEAVL 119 (260)
T ss_dssp HHHHHHHHTC-------------------------------------------S--CEEECCTTSCC---SCTTCEEEEE
T ss_pred HHHHHHhhcC-------------------------------------------C--CEEECcHHHCC---CCCCCEEEEE
Confidence 9976651100 0 14567776642 2357899999
Q ss_pred Eeec-cCChhhHHHHHHHHHHhccCCcEEEEecCCcch-hh-----hc---------cC-----CCCC--ccccCCHHHH
Q 015966 303 TCFF-IDTAHNIVEYIEIISRILKDGGVWINLGPLLYH-FA-----DL---------YG-----QEDE--MSIELSLEDV 359 (397)
Q Consensus 303 T~FF-IDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh-~~-----d~---------~g-----~~~~--~~ieLS~EEl 359 (397)
+... +....+....++.++++|||||++|-..|..+. .. .. .+ ..+. ....++.+|+
T Consensus 120 ~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 199 (260)
T 2avn_A 120 ALGDVLSYVENKDKAFSEIRRVLVPDGLLIATVDNFYTFLQQMIEKDAWDQITRFLKTQTTSVGTTLFSFNSYAFKPEDL 199 (260)
T ss_dssp ECSSHHHHCSCHHHHHHHHHHHEEEEEEEEEEEEBHHHHHHHHHHTTCHHHHHHHHHHCEEEEECSSEEEEEECBCGGGG
T ss_pred EcchhhhccccHHHHHHHHHHHcCCCeEEEEEeCChHHHHHHhhcchhHHHHHHHHhccccccCCCceeEEEeccCHHHH
Confidence 8642 222234779999999999999999953332220 00 00 00 0000 0014788999
Q ss_pred HHHHHhCCCEEEEEee
Q 015966 360 KRVALHYGFEFEKEKT 375 (397)
Q Consensus 360 ~~ll~~~GFeii~e~~ 375 (397)
+++ +||++++...
T Consensus 200 ~~l---aGf~~~~~~~ 212 (260)
T 2avn_A 200 DSL---EGFETVDIRG 212 (260)
T ss_dssp SSC---TTEEEEEEEE
T ss_pred HHh---cCceEEEEEC
Confidence 888 8999988653
|
| >3bgv_A MRNA CAP guanine-N7 methyltransferase; alternative splicing, mRNA capping, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: SAH; 2.30A {Homo sapiens} PDB: 3epp_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=1.2e-12 Score=125.20 Aligned_cols=165 Identities=15% Similarity=0.090 Sum_probs=106.9
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
.+++.|....+ ++.+|||+|||+|.++..|++. +..|+|+|+|..|+..++-........
T Consensus 23 ~~~~~l~~~~~-----~~~~VLDlGcG~G~~~~~l~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~-------------- 83 (313)
T 3bgv_A 23 EFLEKVRQKKK-----RDITVLDLGCGKGGDLLKWKKGRINKLVCTDIADVSVKQCQQRYEDMKNR-------------- 83 (313)
T ss_dssp HHHHHHHHTC-------CCEEEEETCTTTTTHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHHSS--------------
T ss_pred HHHHHhhhccC-----CCCEEEEECCCCcHHHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhhhc--------------
Confidence 35555544332 4679999999999999999976 568999999999998776332110000
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEeccccccc---CCCCCCCCccEEEEeecc----CChhhHHHHHHHHHHhc
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVY---SDPSQVGAWDAVVTCFFI----DTAHNIVEYIEIISRIL 324 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely---~~~~~~~~fD~VvT~FFI----Dta~Ni~~yi~~I~~~L 324 (397)
... ....++.++.+|+.++. ..+...++||+|++.+.+ .+.+++...++.++++|
T Consensus 84 --~~~----------------~~~~~~~~~~~D~~~~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~~~~~L 145 (313)
T 3bgv_A 84 --RDS----------------EYIFSAEFITADSSKELLIDKFRDPQMCFDICSCQFVCHYSFESYEQADMMLRNACERL 145 (313)
T ss_dssp --SCC-----------------CCCEEEEEECCTTTSCSTTTCSSTTCCEEEEEEETCGGGGGGSHHHHHHHHHHHHTTE
T ss_pred --ccc----------------cccceEEEEEecccccchhhhcccCCCCEEEEEEecchhhccCCHHHHHHHHHHHHHHh
Confidence 000 00123788899987752 111124689999998755 45567789999999999
Q ss_pred cCCcEEEEecCC-------------------cch--hhhc--cC---C---------CCCccccCCHHHHHHHHHhCCCE
Q 015966 325 KDGGVWINLGPL-------------------LYH--FADL--YG---Q---------EDEMSIELSLEDVKRVALHYGFE 369 (397)
Q Consensus 325 KPGG~wIN~GPL-------------------lYh--~~d~--~g---~---------~~~~~ieLS~EEl~~ll~~~GFe 369 (397)
||||++|-.-|- .|. |.+. .+ . .+...+.++.+++.+++++.||+
T Consensus 146 kpgG~li~~~~~~~~l~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~f~l~~~~~~~~~~~~~~~~~~l~~~~G~~ 225 (313)
T 3bgv_A 146 SPGGYFIGTTPNSFELIRRLEASETESFGNEIYTVKFQKKGDYPLFGCKYDFNLEGVVDVPEFLVYFPLLNEMAKKYNMK 225 (313)
T ss_dssp EEEEEEEEEEECHHHHHHHHTTSSSSEEECSSEEEEESCSSCCCSSCCEEEEEEC---CCEEECCCHHHHHHHGGGGTEE
T ss_pred CCCcEEEEecCChHHHHHHHHhhccCccCCeeEEEEeCCCCCCCCccceEEEEECCcccCcceEEcHHHHHHHHHHcCcE
Confidence 999999942221 111 1110 00 0 00012337899999999999999
Q ss_pred EEEEe
Q 015966 370 FEKEK 374 (397)
Q Consensus 370 ii~e~ 374 (397)
++...
T Consensus 226 ~v~~~ 230 (313)
T 3bgv_A 226 LVYKK 230 (313)
T ss_dssp EEEEE
T ss_pred EEEec
Confidence 99854
|
| >2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=7.4e-13 Score=125.79 Aligned_cols=190 Identities=15% Similarity=0.202 Sum_probs=110.7
Q ss_pred chhhHHHHHHHHHHhcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHH----HHHc--CCeE--
Q 015966 143 ADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALE----ISHL--GFIS-- 214 (397)
Q Consensus 143 ~d~dkv~stL~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~e----LA~~--Gf~V-- 214 (397)
.|.+........+.+. +.. ...+...+...+..+...++. ..++.+|||+|||+|.++.. ++.+ +..|
T Consensus 10 ~d~~~y~~~~~~~~~~-~~~-~~~~~~~~~~~l~~~l~~~~~--~~~~~~VLDiG~GtG~~~~~~l~~l~~~~~~~~v~~ 85 (292)
T 2aot_A 10 SDHGKYVESFRRFLNH-STE-HQCMQEFMDKKLPGIIGRIGD--TKSEIKILSIGGGAGEIDLQILSKVQAQYPGVCINN 85 (292)
T ss_dssp GCHHHHHHHHHHHHTT-BSH-HHHHHHHHHHTHHHHSSSTTT--TCSEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEE
T ss_pred ccHHHHHHHHHHHHHh-ccH-HHHHHHHHHHhchhHHhhccC--CCCCCeEEEEcCCCCHHHHHHHHHHHhhCCCceeeE
Confidence 5677777777766665 222 122222222222222222211 12567999999999976653 3443 3333
Q ss_pred EEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccC---C
Q 015966 215 QGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS---D 291 (397)
Q Consensus 215 ~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~---~ 291 (397)
+|+|.|..||..++-.+... . .+..+ .+.+..++..++.. .
T Consensus 86 ~~vD~S~~ml~~a~~~~~~~---~-------------------~~~~v--------------~~~~~~~~~~~~~~~~~~ 129 (292)
T 2aot_A 86 EVVEPSAEQIAKYKELVAKT---S-------------------NLENV--------------KFAWHKETSSEYQSRMLE 129 (292)
T ss_dssp EEECSCHHHHHHHHHHHHTC---S-------------------SCTTE--------------EEEEECSCHHHHHHHHHT
T ss_pred EEEeCCHHHHHHHHHHHHhc---c-------------------CCCcc--------------eEEEEecchhhhhhhhcc
Confidence 99999999998776322100 0 00001 13445556544320 0
Q ss_pred CCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe--cC-C----cchh-hhccCCCCCccccCCHHHHHHHH
Q 015966 292 PSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL--GP-L----LYHF-ADLYGQEDEMSIELSLEDVKRVA 363 (397)
Q Consensus 292 ~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~--GP-L----lYh~-~d~~g~~~~~~ieLS~EEl~~ll 363 (397)
+..+++||+|++.+-+...+|+...|+.++++|||||+++-. .+ - +|.. ....+ .+.....++.+++.+++
T Consensus 130 ~~~~~~fD~V~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l 208 (292)
T 2aot_A 130 KKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSGSSGWDKLWKKYGSRFP-QDDLCQYITSDDLTQML 208 (292)
T ss_dssp TTCCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECTTSHHHHHHHHHGGGSC-CCTTCCCCCHHHHHHHH
T ss_pred ccCCCceeEEEEeeeeeecCCHHHHHHHHHHHcCCCcEEEEEEecCCccHHHHHHHHHHhcc-CCCcccCCCHHHHHHHH
Confidence 112578999998876666667889999999999999999952 11 0 1111 01011 11112347999999999
Q ss_pred HhCCCEEEEE
Q 015966 364 LHYGFEFEKE 373 (397)
Q Consensus 364 ~~~GFeii~e 373 (397)
+++||+++..
T Consensus 209 ~~aGf~~~~~ 218 (292)
T 2aot_A 209 DNLGLKYECY 218 (292)
T ss_dssp HHHTCCEEEE
T ss_pred HHCCCceEEE
Confidence 9999998874
|
| >2nxc_A L11 mtase, ribosomal protein L11 methyltransferase; transferase S-adenosly-L-methionine dependent methyltransfer posttranslational modification; 1.59A {Thermus thermophilus} SCOP: c.66.1.39 PDB: 1ufk_A 2nxe_A* 2nxj_A 2nxn_A 2zbp_A* 2zbq_A* 2zbr_A* 3cjq_A* 3cjr_A* 3cju_A* 3egv_A* 3cjt_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.3e-12 Score=122.78 Aligned_cols=133 Identities=20% Similarity=0.192 Sum_probs=100.7
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~ 253 (397)
+++.|.+.+. ++.+|||+|||+|.++..++++|..|+|+|+|..|+..++-.... +
T Consensus 110 ~~~~l~~~~~-----~~~~VLDiGcG~G~l~~~la~~g~~v~gvDi~~~~v~~a~~n~~~----~--------------- 165 (254)
T 2nxc_A 110 ALKALARHLR-----PGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAKR----N--------------- 165 (254)
T ss_dssp HHHHHHHHCC-----TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHH----T---------------
T ss_pred HHHHHHHhcC-----CCCEEEEecCCCcHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHH----c---------------
Confidence 5566665542 467999999999999999999999999999999999877632110 0
Q ss_pred CcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe
Q 015966 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 333 (397)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~ 333 (397)
.+ . +.+..+|+.+... .++||+|+++.. .+.+..+++.+.++|||||++|-.
T Consensus 166 -------~~-------------~-v~~~~~d~~~~~~----~~~fD~Vv~n~~---~~~~~~~l~~~~~~LkpgG~lils 217 (254)
T 2nxc_A 166 -------GV-------------R-PRFLEGSLEAALP----FGPFDLLVANLY---AELHAALAPRYREALVPGGRALLT 217 (254)
T ss_dssp -------TC-------------C-CEEEESCHHHHGG----GCCEEEEEEECC---HHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred -------CC-------------c-EEEEECChhhcCc----CCCCCEEEECCc---HHHHHHHHHHHHHHcCCCCEEEEE
Confidence 00 0 4667888876432 368999998653 344678999999999999999964
Q ss_pred cCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 334 GPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 334 GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
|.+ .-+.+++++++++.||++++..
T Consensus 218 ~~~----------------~~~~~~v~~~l~~~Gf~~~~~~ 242 (254)
T 2nxc_A 218 GIL----------------KDRAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp EEE----------------GGGHHHHHHHHHHTTCEEEEEE
T ss_pred eec----------------cCCHHHHHHHHHHCCCEEEEEe
Confidence 432 2247899999999999998743
|
| >1xdz_A Methyltransferase GIDB; MCSG, protein structure initiative, structural genomics, methyltransferase fold, PSI; 1.60A {Bacillus subtilis} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.44 E-value=1.4e-12 Score=120.46 Aligned_cols=129 Identities=16% Similarity=0.117 Sum_probs=94.1
Q ss_pred CCCeEEEecCCCChhHHHHHH--cCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISH--LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~--~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++..||. .|..|+|+|+|..|+..++...... +
T Consensus 70 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------------------~----- 118 (240)
T 1xdz_A 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEAL--------------------------Q----- 118 (240)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH--------------------------T-----
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc--------------------------C-----
Confidence 567999999999999999994 5789999999999998776332110 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe-cCCcchhhhccC
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL-GPLLYHFADLYG 345 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~-GPLlYh~~d~~g 345 (397)
. .++.++.+|+.++...+...++||+|++..+ .++..+++.++++|||||++|-. |+.
T Consensus 119 -------~-~~v~~~~~d~~~~~~~~~~~~~fD~V~~~~~----~~~~~~l~~~~~~LkpgG~l~~~~g~~--------- 177 (240)
T 1xdz_A 119 -------L-ENTTFCHDRAETFGQRKDVRESYDIVTARAV----ARLSVLSELCLPLVKKNGLFVALKAAS--------- 177 (240)
T ss_dssp -------C-SSEEEEESCHHHHTTCTTTTTCEEEEEEECC----SCHHHHHHHHGGGEEEEEEEEEEECC----------
T ss_pred -------C-CCEEEEeccHHHhcccccccCCccEEEEecc----CCHHHHHHHHHHhcCCCCEEEEEeCCC---------
Confidence 0 1267889998775321112478999998664 34779999999999999999842 221
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 346 QEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 346 ~~~~~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
..-..+++.+.+++.||+++....
T Consensus 178 ------~~~~~~~~~~~l~~~g~~~~~~~~ 201 (240)
T 1xdz_A 178 ------AEEELNAGKKAITTLGGELENIHS 201 (240)
T ss_dssp ------CHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred ------chHHHHHHHHHHHHcCCeEeEEEE
Confidence 111246788889999999987553
|
| >3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.6e-12 Score=116.82 Aligned_cols=124 Identities=11% Similarity=-0.045 Sum_probs=93.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|.++..+|++|..|+|+|+|..|+..|+-.+...
T Consensus 55 ~~~~vLDlGcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~---------------------------------- 100 (204)
T 3njr_A 55 RGELLWDIGGGSGSVSVEWCLAGGRAITIEPRADRIENIQKNIDTY---------------------------------- 100 (204)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------------------------
T ss_pred CCCEEEEecCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHc----------------------------------
Confidence 5679999999999999999999999999999999998776322100
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCCC
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQED 348 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~ 348 (397)
....++.++.+|+.+... ..+.||+|+...-+ +.. +++.++++|||||++|-..+.
T Consensus 101 ----g~~~~v~~~~~d~~~~~~---~~~~~D~v~~~~~~----~~~-~l~~~~~~LkpgG~lv~~~~~------------ 156 (204)
T 3njr_A 101 ----GLSPRMRAVQGTAPAALA---DLPLPEAVFIGGGG----SQA-LYDRLWEWLAPGTRIVANAVT------------ 156 (204)
T ss_dssp ----TCTTTEEEEESCTTGGGT---TSCCCSEEEECSCC----CHH-HHHHHHHHSCTTCEEEEEECS------------
T ss_pred ----CCCCCEEEEeCchhhhcc---cCCCCCEEEECCcc----cHH-HHHHHHHhcCCCcEEEEEecC------------
Confidence 011237889999988432 13579999865422 455 999999999999999952221
Q ss_pred CccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 349 EMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 349 ~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
.-+.+++.+++++.||++....
T Consensus 157 ----~~~~~~~~~~l~~~g~~i~~i~ 178 (204)
T 3njr_A 157 ----LESETLLTQLHARHGGQLLRID 178 (204)
T ss_dssp ----HHHHHHHHHHHHHHCSEEEEEE
T ss_pred ----cccHHHHHHHHHhCCCcEEEEE
Confidence 1245788888999999988743
|
| >2zfu_A Nucleomethylin, cerebral protein 1; nucleolar protein, SAM-binding protein, protein structure, N phosphoprotein, nuclear protein; HET: SAH; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.43 E-value=2e-12 Score=116.25 Aligned_cols=141 Identities=19% Similarity=0.184 Sum_probs=99.5
Q ss_pred hHHHHHHHHHHhcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHH
Q 015966 146 DKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMI 225 (397)
Q Consensus 146 dkv~stL~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~ 225 (397)
++.........+.|... ....+++.|... .++.+|||+|||+|.++..|+ ..|+|+|+|..
T Consensus 37 ~~~~~~~~~~~~~~~~~-------~~~~~~~~l~~~------~~~~~vLDiG~G~G~~~~~l~---~~v~~~D~s~~--- 97 (215)
T 2zfu_A 37 LLYHRGFQSQVKKWPLQ-------PVDRIARDLRQR------PASLVVADFGCGDCRLASSIR---NPVHCFDLASL--- 97 (215)
T ss_dssp HHHHHHHHHHHTTSSSC-------HHHHHHHHHHTS------CTTSCEEEETCTTCHHHHHCC---SCEEEEESSCS---
T ss_pred HHHHHHHHhhhcccchh-------HHHHHHHHHhcc------CCCCeEEEECCcCCHHHHHhh---ccEEEEeCCCC---
Confidence 34444444445556532 112355555532 245789999999999998884 78999999974
Q ss_pred HHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee
Q 015966 226 CSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF 305 (397)
Q Consensus 226 ~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F 305 (397)
+ +.+..+|+.++. ...++||+|++.+
T Consensus 98 --~-------------------------------------------------~~~~~~d~~~~~---~~~~~fD~v~~~~ 123 (215)
T 2zfu_A 98 --D-------------------------------------------------PRVTVCDMAQVP---LEDESVDVAVFCL 123 (215)
T ss_dssp --S-------------------------------------------------TTEEESCTTSCS---CCTTCEEEEEEES
T ss_pred --C-------------------------------------------------ceEEEeccccCC---CCCCCEeEEEEeh
Confidence 0 344667776642 2357899999887
Q ss_pred ccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 306 FIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 306 FIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
.+.. .+...+++.++++|||||++|-..+. ....+.+++.+++++.||+++...
T Consensus 124 ~l~~-~~~~~~l~~~~~~L~~gG~l~i~~~~--------------~~~~~~~~~~~~l~~~Gf~~~~~~ 177 (215)
T 2zfu_A 124 SLMG-TNIRDFLEEANRVLKPGGLLKVAEVS--------------SRFEDVRTFLRAVTKLGFKIVSKD 177 (215)
T ss_dssp CCCS-SCHHHHHHHHHHHEEEEEEEEEEECG--------------GGCSCHHHHHHHHHHTTEEEEEEE
T ss_pred hccc-cCHHHHHHHHHHhCCCCeEEEEEEcC--------------CCCCCHHHHHHHHHHCCCEEEEEe
Confidence 6654 67889999999999999999953211 112389999999999999998754
|
| >3g5t_A Trans-aconitate 3-methyltransferase; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; HET: MSE SAH T8N; 1.12A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.42 E-value=8.7e-13 Score=125.29 Aligned_cols=152 Identities=12% Similarity=0.111 Sum_probs=104.3
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHH---HcCCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccc
Q 015966 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEIS---HLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 248 (397)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA---~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~ 248 (397)
..+.+.|.++.+. ++.+|||+|||+|+++..|| ..+..|+|+|+|..|+..++-.+...
T Consensus 23 ~~~~~~l~~~~~~----~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~-------------- 84 (299)
T 3g5t_A 23 SDFYKMIDEYHDG----ERKLLVDVGCGPGTATLQMAQELKPFEQIIGSDLSATMIKTAEVIKEGS-------------- 84 (299)
T ss_dssp HHHHHHHHHHCCS----CCSEEEEETCTTTHHHHHHHHHSSCCSEEEEEESCHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHhcC----CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHhc--------------
Confidence 4466777776542 57899999999999999999 56889999999999998776332110
Q ss_pred ccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCC------CCccEEEEeeccCChhhHHHHHHHHHH
Q 015966 249 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQV------GAWDAVVTCFFIDTAHNIVEYIEIISR 322 (397)
Q Consensus 249 ~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~------~~fD~VvT~FFIDta~Ni~~yi~~I~~ 322 (397)
+ ....++.++.+|+.++-. .. ++||+|++...+... +...+++.+++
T Consensus 85 ----------------~-------~~~~~v~~~~~d~~~~~~---~~~~~~~~~~fD~V~~~~~l~~~-~~~~~l~~~~~ 137 (299)
T 3g5t_A 85 ----------------P-------DTYKNVSFKISSSDDFKF---LGADSVDKQKIDMITAVECAHWF-DFEKFQRSAYA 137 (299)
T ss_dssp ----------------C--------CCTTEEEEECCTTCCGG---GCTTTTTSSCEEEEEEESCGGGS-CHHHHHHHHHH
T ss_pred ----------------c-------CCCCceEEEEcCHHhCCc---cccccccCCCeeEEeHhhHHHHh-CHHHHHHHHHH
Confidence 0 001237888999877532 23 789999988655544 78899999999
Q ss_pred hccCCcEEEE--e-cCCcchhhhc--------cCCCCCc-ccc-CCHHHHHHHHHhCCC
Q 015966 323 ILKDGGVWIN--L-GPLLYHFADL--------YGQEDEM-SIE-LSLEDVKRVALHYGF 368 (397)
Q Consensus 323 ~LKPGG~wIN--~-GPLlYh~~d~--------~g~~~~~-~ie-LS~EEl~~ll~~~GF 368 (397)
+|||||+++- + .|....+... ++..... .+. ...+.++++++.+||
T Consensus 138 ~LkpgG~l~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~p~~~~~~~~l~~~gf 196 (299)
T 3g5t_A 138 NLRKDGTIAIWGYADPIFPDYPEFDDLMIEVPYGKQGLGPYWEQPGRSRLRNMLKDSHL 196 (299)
T ss_dssp HEEEEEEEEEEEEEEEECTTCGGGTTHHHHHHHCTTTTGGGSCTTHHHHHHTTTTTCCC
T ss_pred hcCCCcEEEEEecCCccccCcHHHHHHHHHhccCcccccchhhchhhHHHHHhhhccCC
Confidence 9999999974 1 1221110000 1100111 222 567888999999999
|
| >2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.42 E-value=2.6e-12 Score=123.20 Aligned_cols=145 Identities=13% Similarity=0.154 Sum_probs=100.6
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
+..+|||+|||+|.++..|+++ +..++|+|+| .|+..++-.+...
T Consensus 165 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~~-~~~~~a~~~~~~~-------------------------------- 211 (335)
T 2r3s_A 165 EPLKVLDISASHGLFGIAVAQHNPNAEIFGVDWA-SVLEVAKENARIQ-------------------------------- 211 (335)
T ss_dssp CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEECH-HHHHHHHHHHHHH--------------------------------
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEEecH-HHHHHHHHHHHhc--------------------------------
Confidence 5679999999999999999998 7899999999 9998776322100
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCC--hhhHHHHHHHHHHhccCCcEEEEecCCcch-----
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNIVEYIEIISRILKDGGVWINLGPLLYH----- 339 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDt--a~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh----- 339 (397)
....++.+..+|+.+. .. .+.||+|++...+.. .++..+.++.++++|||||+++-..+..-.
T Consensus 212 ------~~~~~v~~~~~d~~~~-~~---~~~~D~v~~~~~l~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~ 281 (335)
T 2r3s_A 212 ------GVASRYHTIAGSAFEV-DY---GNDYDLVLLPNFLHHFDVATCEQLLRKIKTALAVEGKVIVFDFIPNSDRITP 281 (335)
T ss_dssp ------TCGGGEEEEESCTTTS-CC---CSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCCCTTSSCS
T ss_pred ------CCCcceEEEecccccC-CC---CCCCcEEEEcchhccCCHHHHHHHHHHHHHhCCCCcEEEEEeecCCCCcCCc
Confidence 0112378899998774 21 234999998765432 356789999999999999977743222100
Q ss_pred -hhhccC----CCCCccccCCHHHHHHHHHhCCCEEEEEeec
Q 015966 340 -FADLYG----QEDEMSIELSLEDVKRVALHYGFEFEKEKTI 376 (397)
Q Consensus 340 -~~d~~g----~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i 376 (397)
+....+ .......+++.+|++++++++||++++....
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~t~~~~~~ll~~aGf~~~~~~~~ 323 (335)
T 2r3s_A 282 PDAAAFSLVMLATTPNGDAYTFAEYESMFSNAGFSHSQLHSL 323 (335)
T ss_dssp HHHHHHHHHHHHHSSSCCCCCHHHHHHHHHHTTCSEEEEECC
T ss_pred hHHHHHHHHHHeeCCCCCcCCHHHHHHHHHHCCCCeeeEEEC
Confidence 000000 0000134689999999999999999886533
|
| >2gs9_A Hypothetical protein TT1324; methyl transferase, structural genomics, NPPSFA, national PR protein structural and functional analyses; HET: SAH; 2.60A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.3e-12 Score=114.23 Aligned_cols=127 Identities=17% Similarity=0.065 Sum_probs=91.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|+++..| |+ .|+|+|+|..|+..++-..
T Consensus 36 ~~~~vLdiG~G~G~~~~~l---~~~~v~~vD~s~~~~~~a~~~~------------------------------------ 76 (211)
T 2gs9_A 36 PGESLLEVGAGTGYWLRRL---PYPQKVGVEPSEAMLAVGRRRA------------------------------------ 76 (211)
T ss_dssp CCSEEEEETCTTCHHHHHC---CCSEEEEECCCHHHHHHHHHHC------------------------------------
T ss_pred CCCeEEEECCCCCHhHHhC---CCCeEEEEeCCHHHHHHHHHhC------------------------------------
Confidence 4679999999999999888 88 9999999999997665110
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcch-hh----h
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYH-FA----D 342 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh-~~----d 342 (397)
.++.++.+|+.++. ..+++||+|++...+...++....++.++++|||||++|-..|.... +. .
T Consensus 77 --------~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~~~~~~l~~~~~~L~pgG~l~i~~~~~~~~~~~~~~~ 145 (211)
T 2gs9_A 77 --------PEATWVRAWGEALP---FPGESFDVVLLFTTLEFVEDVERVLLEARRVLRPGGALVVGVLEALSPWAALYRR 145 (211)
T ss_dssp --------TTSEEECCCTTSCC---SCSSCEEEEEEESCTTTCSCHHHHHHHHHHHEEEEEEEEEEEECTTSHHHHHHHH
T ss_pred --------CCcEEEEcccccCC---CCCCcEEEEEEcChhhhcCCHHHHHHHHHHHcCCCCEEEEEecCCcCcHHHHHHH
Confidence 01566778877642 23578999999877776667889999999999999999854332111 10 0
Q ss_pred --ccCCCC-CccccCCHHHHHHHHHhCC
Q 015966 343 --LYGQED-EMSIELSLEDVKRVALHYG 367 (397)
Q Consensus 343 --~~g~~~-~~~ieLS~EEl~~ll~~~G 367 (397)
..+... .....+|.++++++++ |
T Consensus 146 ~~~~~~~~~~~~~~~s~~~l~~~l~--G 171 (211)
T 2gs9_A 146 LGEKGVLPWAQARFLAREDLKALLG--P 171 (211)
T ss_dssp HHHTTCTTGGGCCCCCHHHHHHHHC--S
T ss_pred HhhccCccccccccCCHHHHHHHhc--C
Confidence 011111 1123489999999998 8
|
| >3g89_A Ribosomal RNA small subunit methyltransferase G; 16S rRNA methyltransferase, translation, cytoplasm, rRNA processing; HET: HIC SAM AMP; 1.50A {Thermus thermophilus} PDB: 3g88_A* 3g8a_A* 3g8b_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-12 Score=121.86 Aligned_cols=184 Identities=13% Similarity=0.141 Sum_probs=115.4
Q ss_pred hhHHHHHHHHHHhcccccCh----hHHhhch-HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEE
Q 015966 145 VDKVRCIIRNIVRDWAAEGK----TERDQCY-KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGN 217 (397)
Q Consensus 145 ~dkv~stL~q~~RDWS~eG~----~ER~~~y-~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~Gn 217 (397)
.+++. .+.++..+|...-. .+.+..| ..+++.+.-..+ ....++.+|||+|||+|.++..||.. +..|+|+
T Consensus 33 ~~~~~-~~~~~l~~~~~~~nl~~i~~~~~~~~~~~~ds~~~l~~-~~~~~~~~vLDiG~G~G~~~i~la~~~~~~~v~~v 110 (249)
T 3g89_A 33 LEAFS-RLYALLQEASGKVNLTALRGEEEVVVKHFLDSLTLLRL-PLWQGPLRVLDLGTGAGFPGLPLKIVRPELELVLV 110 (249)
T ss_dssp HHHHH-HHHHHHHHC----------CHHHHHHHHHHHHHGGGGS-SCCCSSCEEEEETCTTTTTHHHHHHHCTTCEEEEE
T ss_pred HHHHH-HHHHHHHHHhcCCCCceECCHHHHhhceeeechhhhcc-cccCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEE
Confidence 34443 56667778865211 1112222 234444432222 11235779999999999999999987 6799999
Q ss_pred eCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCC
Q 015966 218 EFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGA 297 (397)
Q Consensus 218 D~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~ 297 (397)
|+|..|+..++...... + . .++.++.+|+.++...+...++
T Consensus 111 D~s~~~~~~a~~~~~~~--------------------------~------------l-~~v~~~~~d~~~~~~~~~~~~~ 151 (249)
T 3g89_A 111 DATRKKVAFVERAIEVL--------------------------G------------L-KGARALWGRAEVLAREAGHREA 151 (249)
T ss_dssp ESCHHHHHHHHHHHHHH--------------------------T------------C-SSEEEEECCHHHHTTSTTTTTC
T ss_pred ECCHHHHHHHHHHHHHh--------------------------C------------C-CceEEEECcHHHhhcccccCCC
Confidence 99999998877432110 0 0 1267889998775321112478
Q ss_pred ccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE-ecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeec
Q 015966 298 WDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTI 376 (397)
Q Consensus 298 fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN-~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i 376 (397)
||+|++..+ .++..+++.+.++|||||+++- .|+. .+-..+++...+++.||++++....
T Consensus 152 fD~I~s~a~----~~~~~ll~~~~~~LkpgG~l~~~~g~~---------------~~~e~~~~~~~l~~~G~~~~~~~~~ 212 (249)
T 3g89_A 152 YARAVARAV----APLCVLSELLLPFLEVGGAAVAMKGPR---------------VEEELAPLPPALERLGGRLGEVLAL 212 (249)
T ss_dssp EEEEEEESS----CCHHHHHHHHGGGEEEEEEEEEEECSC---------------CHHHHTTHHHHHHHHTEEEEEEEEE
T ss_pred ceEEEECCc----CCHHHHHHHHHHHcCCCeEEEEEeCCC---------------cHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 999998654 2467899999999999999985 2321 1112346777788899999886544
Q ss_pred CCCCCCCccccc
Q 015966 377 ETTYTTNPRSMM 388 (397)
Q Consensus 377 ~~~Y~~d~~sm~ 388 (397)
..+.....+.+.
T Consensus 213 ~~p~~~~~R~l~ 224 (249)
T 3g89_A 213 QLPLSGEARHLV 224 (249)
T ss_dssp ECTTTCCEEEEE
T ss_pred eCCCCCCcEEEE
Confidence 445444455444
|
| >3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} | Back alignment and structure |
|---|
Probab=99.42 E-value=3.4e-12 Score=118.70 Aligned_cols=149 Identities=9% Similarity=0.026 Sum_probs=97.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHH------HHHHHHhhhhcccccCccccccccccccCCCCcccCc
Q 015966 189 SPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYY------MMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQL 259 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~------ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~ql 259 (397)
++.+|||+|||+|.++..++++ | ..|+|+|+|.. |+..++..+...
T Consensus 43 ~~~~vLDiGcG~G~~~~~l~~~~g~~~~v~gvD~s~~~~~~~~~~~~a~~~~~~~------------------------- 97 (275)
T 3bkx_A 43 PGEKILEIGCGQGDLSAVLADQVGSSGHVTGIDIASPDYGAPLTLGQAWNHLLAG------------------------- 97 (275)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHCTTCEEEEECSSCTTCCSSSCHHHHHHHHHTS-------------------------
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEECCccccccHHHHHHHHHHHHhc-------------------------
Confidence 5679999999999999999998 4 79999999997 887665322100
Q ss_pred cccccCCCCCCCCCCCCcceeEecc-cccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEec--C-
Q 015966 260 RPVSIPDIHPASAGITEGFSMCGGD-FVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLG--P- 335 (397)
Q Consensus 260 r~v~iPDv~p~~~~~~~~ls~~~GD-F~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~G--P- 335 (397)
....++.+..+| +.... .+...++||+|++...+....+...+++.+.++|+|||+++-.. +
T Consensus 98 -------------~~~~~v~~~~~d~~~~~~-~~~~~~~fD~v~~~~~l~~~~~~~~~~~~~~~l~~~gG~l~~~~~~~~ 163 (275)
T 3bkx_A 98 -------------PLGDRLTVHFNTNLSDDL-GPIADQHFDRVVLAHSLWYFASANALALLFKNMAAVCDHVDVAEWSMQ 163 (275)
T ss_dssp -------------TTGGGEEEECSCCTTTCC-GGGTTCCCSEEEEESCGGGSSCHHHHHHHHHHHTTTCSEEEEEEECSS
T ss_pred -------------CCCCceEEEECChhhhcc-CCCCCCCEEEEEEccchhhCCCHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence 011236777887 43321 12235789999987644433444567788888888899998521 1
Q ss_pred ----Ccc-h---------hhhc-cCCCCCccccCCHHHHHHHHHhCCCEEEEEeec
Q 015966 336 ----LLY-H---------FADL-YGQEDEMSIELSLEDVKRVALHYGFEFEKEKTI 376 (397)
Q Consensus 336 ----LlY-h---------~~d~-~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i 376 (397)
..+ + +... ..........+|.++++++++++||++++...+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~aGf~~~~~~~~ 219 (275)
T 3bkx_A 164 PTALDQIGHLQAAMIQGLLYAIAPSDVANIRTLITPDTLAQIAHDNTWTYTAGTIV 219 (275)
T ss_dssp CSSGGGHHHHHHHHHHHHHHHHSCCTTCSCCCCCCHHHHHHHHHHHTCEEEECCCB
T ss_pred CCchhhhhHHHHHHHHHHHhhccccccccccccCCHHHHHHHHHHCCCeeEEEEEe
Confidence 000 0 0000 001111123579999999999999999986644
|
| >3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae} | Back alignment and structure |
|---|
Probab=99.41 E-value=2.4e-12 Score=111.48 Aligned_cols=124 Identities=11% Similarity=-0.035 Sum_probs=90.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++..+|++ +..|+|+|+|..|+..++..+...
T Consensus 25 ~~~~vldiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-------------------------------- 72 (178)
T 3hm2_A 25 PHETLWDIGGGSGSIAIEWLRSTPQTTAVCFEISEERRERILSNAINL-------------------------------- 72 (178)
T ss_dssp TTEEEEEESTTTTHHHHHHHTTSSSEEEEEECSCHHHHHHHHHHHHTT--------------------------------
T ss_pred CCCeEEEeCCCCCHHHHHHHHHCCCCeEEEEeCCHHHHHHHHHHHHHh--------------------------------
Confidence 5679999999999999999998 789999999999998776332110
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCC
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~ 346 (397)
....++ ++.+|..+... ...++||+|++.+.+.. ..+++.++++|||||++|-..+.
T Consensus 73 ------~~~~~~-~~~~d~~~~~~--~~~~~~D~i~~~~~~~~----~~~l~~~~~~L~~gG~l~~~~~~---------- 129 (178)
T 3hm2_A 73 ------GVSDRI-AVQQGAPRAFD--DVPDNPDVIFIGGGLTA----PGVFAAAWKRLPVGGRLVANAVT---------- 129 (178)
T ss_dssp ------TCTTSE-EEECCTTGGGG--GCCSCCSEEEECC-TTC----TTHHHHHHHTCCTTCEEEEEECS----------
T ss_pred ------CCCCCE-EEecchHhhhh--ccCCCCCEEEECCcccH----HHHHHHHHHhcCCCCEEEEEeec----------
Confidence 001135 66778765432 22378999998776654 57899999999999999842221
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 347 EDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 347 ~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
.-+.+++..++++.|+++...
T Consensus 130 ------~~~~~~~~~~~~~~~~~~~~~ 150 (178)
T 3hm2_A 130 ------VESEQMLWALRKQFGGTISSF 150 (178)
T ss_dssp ------HHHHHHHHHHHHHHCCEEEEE
T ss_pred ------cccHHHHHHHHHHcCCeeEEE
Confidence 123567788888999988764
|
| >3p2e_A 16S rRNA methylase; methyltransferase, transferase, NPMA; HET: SAH; 1.68A {Escherichia coli} PDB: 3p2i_A 3p2k_A* 3pb3_A* 3mte_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=5.1e-13 Score=123.99 Aligned_cols=154 Identities=12% Similarity=0.065 Sum_probs=89.3
Q ss_pred CCCeEEEecCCCChhHHHHHH--cCCeEEEEeCC-HHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISH--LGFISQGNEFS-YYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~--~Gf~V~GnD~S-~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|+++..||+ .|..|+|+|+| ..||..|.+...+... ..+
T Consensus 24 ~~~~vLDiGCG~G~~~~~la~~~~~~~v~GvD~s~~~ml~~A~~A~~~~~~-------------------------~~~- 77 (225)
T 3p2e_A 24 FDRVHIDLGTGDGRNIYKLAINDQNTFYIGIDPVKENLFDISKKIIKKPSK-------------------------GGL- 77 (225)
T ss_dssp CSEEEEEETCTTSHHHHHHHHTCTTEEEEEECSCCGGGHHHHHHHTSCGGG-------------------------TCC-
T ss_pred CCCEEEEEeccCcHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHH-------------------------cCC-
Confidence 567999999999999999994 47789999999 8887765322211110 000
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCC-----hhhHHHHHHHHHHhccCCcEEEEecCCcchh
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT-----AHNIVEYIEIISRILKDGGVWINLGPLLYHF 340 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDt-----a~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~ 340 (397)
.++.++.+|+.++.. ...+.+|+|+..|.... ..+..++|+.++++|||||+++-.-.+--++
T Consensus 78 ----------~~v~~~~~d~~~l~~--~~~d~v~~i~~~~~~~~~~~~~~~~~~~~l~~~~r~LkpGG~l~i~~~~~~~~ 145 (225)
T 3p2e_A 78 ----------SNVVFVIAAAESLPF--ELKNIADSISILFPWGTLLEYVIKPNRDILSNVADLAKKEAHFEFVTTYSDSY 145 (225)
T ss_dssp ----------SSEEEECCBTTBCCG--GGTTCEEEEEEESCCHHHHHHHHTTCHHHHHHHHTTEEEEEEEEEEECCCC--
T ss_pred ----------CCeEEEEcCHHHhhh--hccCeEEEEEEeCCCcHHhhhhhcchHHHHHHHHHhcCCCcEEEEEEeccccc
Confidence 136788899877621 11244555544442111 0112468999999999999998511111111
Q ss_pred hhc---cCCCCCcccc-CCHHHHHHHHHhCCCEEEEEeecCCCC
Q 015966 341 ADL---YGQEDEMSIE-LSLEDVKRVALHYGFEFEKEKTIETTY 380 (397)
Q Consensus 341 ~d~---~g~~~~~~ie-LS~EEl~~ll~~~GFeii~e~~i~~~Y 380 (397)
+.. ....+...-. +..+|+.+++++.||+++..+.....|
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~el~~~l~~aGf~v~~~~~~~~~~ 189 (225)
T 3p2e_A 146 EEAEIKKRGLPLLSKAYFLSEQYKAELSNSGFRIDDVKELDNEY 189 (225)
T ss_dssp ------------CCHHHHHSHHHHHHHHHHTCEEEEEEEECHHH
T ss_pred hhchhhhcCCCCCChhhcchHHHHHHHHHcCCCeeeeeecCHHH
Confidence 110 0001100101 122459999999999999866443333
|
| >3r0q_C Probable protein arginine N-methyltransferase 4.2; arginine methyltransferase, methylation; HET: SAH; 2.61A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.4e-12 Score=129.80 Aligned_cols=113 Identities=16% Similarity=0.126 Sum_probs=86.0
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
.+.+.|.+.... .++.+|||+|||+|.++..+|++|. .|+|+|+| .|+..++-.+...
T Consensus 50 ~~~~~i~~~~~~---~~~~~VLDlGcGtG~ls~~la~~g~~~V~gvD~s-~~~~~a~~~~~~~----------------- 108 (376)
T 3r0q_C 50 AYFNAVFQNKHH---FEGKTVLDVGTGSGILAIWSAQAGARKVYAVEAT-KMADHARALVKAN----------------- 108 (376)
T ss_dssp HHHHHHHTTTTT---TTTCEEEEESCTTTHHHHHHHHTTCSEEEEEESS-TTHHHHHHHHHHT-----------------
T ss_pred HHHHHHHhcccc---CCCCEEEEeccCcCHHHHHHHhcCCCEEEEEccH-HHHHHHHHHHHHc-----------------
Confidence 344555444322 2578999999999999999999999 99999999 9998776433210
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe---eccCChhhHHHHHHHHHHhccCCc
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGG 328 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~---FFIDta~Ni~~yi~~I~~~LKPGG 328 (397)
....++.++.+|+.++.. .++||+|++. +|+.....+..+++.++++|||||
T Consensus 109 ---------------------~~~~~v~~~~~d~~~~~~----~~~~D~Iv~~~~~~~l~~e~~~~~~l~~~~~~LkpgG 163 (376)
T 3r0q_C 109 ---------------------NLDHIVEVIEGSVEDISL----PEKVDVIISEWMGYFLLRESMFDSVISARDRWLKPTG 163 (376)
T ss_dssp ---------------------TCTTTEEEEESCGGGCCC----SSCEEEEEECCCBTTBTTTCTHHHHHHHHHHHEEEEE
T ss_pred ---------------------CCCCeEEEEECchhhcCc----CCcceEEEEcChhhcccchHHHHHHHHHHHhhCCCCe
Confidence 011237889999988632 2789999984 467666668889999999999999
Q ss_pred EEE
Q 015966 329 VWI 331 (397)
Q Consensus 329 ~wI 331 (397)
++|
T Consensus 164 ~li 166 (376)
T 3r0q_C 164 VMY 166 (376)
T ss_dssp EEE
T ss_pred EEE
Confidence 998
|
| >3evz_A Methyltransferase; NYSGXRC, NEW YORK SGX research CE structural genomics, protein structure initiative, pyrococc furiosus, PSI-2; 2.20A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.40 E-value=2.3e-12 Score=116.97 Aligned_cols=129 Identities=15% Similarity=0.151 Sum_probs=93.6
Q ss_pred CCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+||| +|.++..+|++ +..|+|+|+|..|+..++..+... +
T Consensus 55 ~~~~vLDlG~G~~G~~~~~la~~~~~~v~~vD~s~~~~~~a~~~~~~~--------------------------~----- 103 (230)
T 3evz_A 55 GGEVALEIGTGHTAMMALMAEKFFNCKVTATEVDEEFFEYARRNIERN--------------------------N----- 103 (230)
T ss_dssp SSCEEEEECCTTTCHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHHT--------------------------T-----
T ss_pred CCCEEEEcCCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHh--------------------------C-----
Confidence 56899999999 99999999999 899999999999998776332110 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--eccC-----------------ChhhHHHHHHHHHHhccCC
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFID-----------------TAHNIVEYIEIISRILKDG 327 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFID-----------------ta~Ni~~yi~~I~~~LKPG 327 (397)
.++.++.+|+..+... ..++||+|++. |+-. ....+.++++.+.++||||
T Consensus 104 ---------~~v~~~~~d~~~~~~~--~~~~fD~I~~npp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lkpg 172 (230)
T 3evz_A 104 ---------SNVRLVKSNGGIIKGV--VEGTFDVIFSAPPYYDKPLGRVLTEREAIGGGKYGEEFSVKLLEEAFDHLNPG 172 (230)
T ss_dssp ---------CCCEEEECSSCSSTTT--CCSCEEEEEECCCCC---------------CCSSSCHHHHHHHHHHGGGEEEE
T ss_pred ---------CCcEEEeCCchhhhhc--ccCceeEEEECCCCcCCccccccChhhhhccCccchHHHHHHHHHHHHHhCCC
Confidence 0267788886543222 24789999976 2211 1122468999999999999
Q ss_pred cEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 328 GVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 328 G~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
|+++-.-|-. .-..+++.+++++.||++...+
T Consensus 173 G~l~~~~~~~---------------~~~~~~~~~~l~~~g~~~~~~~ 204 (230)
T 3evz_A 173 GKVALYLPDK---------------EKLLNVIKERGIKLGYSVKDIK 204 (230)
T ss_dssp EEEEEEEESC---------------HHHHHHHHHHHHHTTCEEEEEE
T ss_pred eEEEEEeccc---------------HhHHHHHHHHHHHcCCceEEEE
Confidence 9999532210 1245889999999999887754
|
| >1nt2_A Fibrillarin-like PRE-rRNA processing protein; adeMet, binding motif, RNA binding protein; HET: SAM; 2.90A {Archaeoglobus fulgidus} SCOP: c.66.1.3 | Back alignment and structure |
|---|
Probab=99.40 E-value=8.3e-12 Score=114.51 Aligned_cols=136 Identities=14% Similarity=0.043 Sum_probs=87.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++..||+++ ..|+|+|+|..|+.... +.+...
T Consensus 57 ~g~~VLDlGcGtG~~~~~la~~~~~~~V~gvD~s~~~l~~~~---~~a~~~----------------------------- 104 (210)
T 1nt2_A 57 GDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLL---ELVRER----------------------------- 104 (210)
T ss_dssp SSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHH---HHHHHC-----------------------------
T ss_pred CCCEEEEECCcCCHHHHHHHHHcCCCEEEEEECCHHHHHHHH---HHHhcC-----------------------------
Confidence 67799999999999999999874 68999999999874222 111100
Q ss_pred CCCCCCCCCCcceeEecccccccC-CCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccC
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~-~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g 345 (397)
.++.++.+|+.+... .+. .++||+|++.. .+ ......+++.++++|||||+++-. +.-...
T Consensus 105 ---------~~v~~~~~d~~~~~~~~~~-~~~fD~V~~~~-~~-~~~~~~~l~~~~r~LkpgG~l~i~----~~~~~~-- 166 (210)
T 1nt2_A 105 ---------NNIIPLLFDASKPWKYSGI-VEKVDLIYQDI-AQ-KNQIEILKANAEFFLKEKGEVVIM----VKARSI-- 166 (210)
T ss_dssp ---------SSEEEECSCTTCGGGTTTT-CCCEEEEEECC-CS-TTHHHHHHHHHHHHEEEEEEEEEE----EEHHHH--
T ss_pred ---------CCeEEEEcCCCCchhhccc-ccceeEEEEec-cC-hhHHHHHHHHHHHHhCCCCEEEEE----EecCCc--
Confidence 014456677665311 111 37899998763 22 233445699999999999999953 111110
Q ss_pred CCCCccccCCHHHHH--HH--HHhCCCEEEEEeecCCCCC
Q 015966 346 QEDEMSIELSLEDVK--RV--ALHYGFEFEKEKTIETTYT 381 (397)
Q Consensus 346 ~~~~~~ieLS~EEl~--~l--l~~~GFeii~e~~i~~~Y~ 381 (397)
....+.+++. .+ +++. |++++.... .+|.
T Consensus 167 -----~~~~~~~~~~~~~~~~l~~~-f~~~~~~~~-~p~~ 199 (210)
T 1nt2_A 167 -----DSTAEPEEVFKSVLKEMEGD-FKIVKHGSL-MPYH 199 (210)
T ss_dssp -----CTTSCHHHHHHHHHHHHHTT-SEEEEEEEC-TTTC
T ss_pred -----cccCCHHHHHHHHHHHHHhh-cEEeeeecC-CCCC
Confidence 1234556653 22 6777 999987644 3454
|
| >3q87_B N6 adenine specific DNA methylase; SAM-methyltransferase, methyltransferase, methylation, trans activator-transferase complex; HET: SAM; 2.00A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=99.39 E-value=5.5e-12 Score=111.21 Aligned_cols=116 Identities=13% Similarity=0.052 Sum_probs=87.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|.++..||++| .|+|+|+|..|+.. .
T Consensus 23 ~~~~vLD~GcG~G~~~~~l~~~~-~v~gvD~s~~~~~~---------~-------------------------------- 60 (170)
T 3q87_B 23 EMKIVLDLGTSTGVITEQLRKRN-TVVSTDLNIRALES---------H-------------------------------- 60 (170)
T ss_dssp CSCEEEEETCTTCHHHHHHTTTS-EEEEEESCHHHHHT---------C--------------------------------
T ss_pred CCCeEEEeccCccHHHHHHHhcC-cEEEEECCHHHHhc---------c--------------------------------
Confidence 45699999999999999999999 99999999999842 0
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-ccC--------ChhhHHHHHHHHHHhccCCcEEEEecCCcch
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FID--------TAHNIVEYIEIISRILKDGGVWINLGPLLYH 339 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-FID--------ta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh 339 (397)
.++.++.+|+.+... .++||+|+++. |.. ...+..+.++.+.+.| |||+++-..+
T Consensus 61 -------~~~~~~~~d~~~~~~----~~~fD~i~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-pgG~l~~~~~---- 124 (170)
T 3q87_B 61 -------RGGNLVRADLLCSIN----QESVDVVVFNPPYVPDTDDPIIGGGYLGREVIDRFVDAV-TVGMLYLLVI---- 124 (170)
T ss_dssp -------SSSCEEECSTTTTBC----GGGCSEEEECCCCBTTCCCTTTBCCGGGCHHHHHHHHHC-CSSEEEEEEE----
T ss_pred -------cCCeEEECChhhhcc----cCCCCEEEECCCCccCCccccccCCcchHHHHHHHHhhC-CCCEEEEEEe----
Confidence 125678899877432 47899999874 221 1123457888999999 9999984221
Q ss_pred hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 340 FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 340 ~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
-.-..+++++++++.||+.+...
T Consensus 125 ------------~~~~~~~l~~~l~~~gf~~~~~~ 147 (170)
T 3q87_B 125 ------------EANRPKEVLARLEERGYGTRILK 147 (170)
T ss_dssp ------------GGGCHHHHHHHHHHTTCEEEEEE
T ss_pred ------------cCCCHHHHHHHHHHCCCcEEEEE
Confidence 11357899999999999987743
|
| >3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.2e-12 Score=113.35 Aligned_cols=115 Identities=16% Similarity=0.081 Sum_probs=84.1
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
+++.|....+ .++.+|||+|||+|.++..++++|. .|+|+|+|..|+..++..+...
T Consensus 33 l~~~l~~~~~----~~~~~vLDlgcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------------------ 90 (189)
T 3p9n_A 33 LFNIVTARRD----LTGLAVLDLYAGSGALGLEALSRGAASVLFVESDQRSAAVIARNIEAL------------------ 90 (189)
T ss_dssp HHHHHHHHSC----CTTCEEEEETCTTCHHHHHHHHTTCSEEEEEECCHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHhccC----CCCCEEEEeCCCcCHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHc------------------
Confidence 4455554432 1467999999999999999999987 6999999999998877322110
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-ccCChhhHHHHHHHHHH--hccCCcE
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTAHNIVEYIEIISR--ILKDGGV 329 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta~Ni~~yi~~I~~--~LKPGG~ 329 (397)
. . .++.++.+|+.++... ...++||+|++.. |....+++.+.++.+.+ +|||||+
T Consensus 91 --------~------------~-~~v~~~~~d~~~~~~~-~~~~~fD~i~~~~p~~~~~~~~~~~l~~~~~~~~L~pgG~ 148 (189)
T 3p9n_A 91 --------G------------L-SGATLRRGAVAAVVAA-GTTSPVDLVLADPPYNVDSADVDAILAALGTNGWTREGTV 148 (189)
T ss_dssp --------T------------C-SCEEEEESCHHHHHHH-CCSSCCSEEEECCCTTSCHHHHHHHHHHHHHSSSCCTTCE
T ss_pred --------C------------C-CceEEEEccHHHHHhh-ccCCCccEEEECCCCCcchhhHHHHHHHHHhcCccCCCeE
Confidence 0 0 1377899998875320 1247899999864 33334678899999999 9999999
Q ss_pred EEE
Q 015966 330 WIN 332 (397)
Q Consensus 330 wIN 332 (397)
+|-
T Consensus 149 l~~ 151 (189)
T 3p9n_A 149 AVV 151 (189)
T ss_dssp EEE
T ss_pred EEE
Confidence 994
|
| >1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A | Back alignment and structure |
|---|
Probab=99.38 E-value=6.8e-12 Score=115.16 Aligned_cols=136 Identities=16% Similarity=0.079 Sum_probs=91.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-G-f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++..||++ | ..|+|+|+|..|+..++-.. ..
T Consensus 74 ~~~~VLDlGcG~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~---~~------------------------------ 120 (230)
T 1fbn_A 74 RDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDAC---AE------------------------------ 120 (230)
T ss_dssp TTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHT---TT------------------------------
T ss_pred CCCEEEEEcccCCHHHHHHHHHcCCcEEEEEECCHHHHHHHHHHh---hc------------------------------
Confidence 5679999999999999999998 5 68999999999997665211 00
Q ss_pred CCCCCCCCCCcceeEecccccccC-CCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccC
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~-~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g 345 (397)
..++.++.+|+.+... .+.. +.||+|+.. +........+++.+.++|||||+++-. +.......
T Consensus 121 --------~~~v~~~~~d~~~~~~~~~~~-~~~D~v~~~--~~~~~~~~~~l~~~~~~LkpgG~l~i~----~~~~~~~~ 185 (230)
T 1fbn_A 121 --------RENIIPILGDANKPQEYANIV-EKVDVIYED--VAQPNQAEILIKNAKWFLKKGGYGMIA----IKARSIDV 185 (230)
T ss_dssp --------CTTEEEEECCTTCGGGGTTTS-CCEEEEEEC--CCSTTHHHHHHHHHHHHEEEEEEEEEE----EEGGGTCS
T ss_pred --------CCCeEEEECCCCCcccccccC-ccEEEEEEe--cCChhHHHHHHHHHHHhCCCCcEEEEE----EecCCCCC
Confidence 0126677888766211 1122 689999832 233333467899999999999999953 21111100
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 346 QEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 346 ~~~~~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
..+ ...+..+++. ++++.||++++...
T Consensus 186 ~~~--~~~~~~~~l~-~l~~~Gf~~~~~~~ 212 (230)
T 1fbn_A 186 TKD--PKEIFKEQKE-ILEAGGFKIVDEVD 212 (230)
T ss_dssp SSC--HHHHHHHHHH-HHHHHTEEEEEEEE
T ss_pred CCC--HHHhhHHHHH-HHHHCCCEEEEEEc
Confidence 111 1134568888 88899999887553
|
| >1l3i_A Precorrin-6Y methyltransferase/putative decarboxylase; structural genomics, beta barrel, rossmann fold, tetramer; HET: SAH; 1.95A {Methanothermobacterthermautotrophicus} SCOP: c.66.1.22 PDB: 1kxz_A 1l3b_A 1f38_A 1l3c_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=4.3e-12 Score=110.10 Aligned_cols=124 Identities=19% Similarity=0.174 Sum_probs=92.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|.++..+++.+..|+|+|+|..|+..++..+...
T Consensus 33 ~~~~vldiG~G~G~~~~~l~~~~~~v~~~D~~~~~~~~a~~~~~~~---------------------------------- 78 (192)
T 1l3i_A 33 KNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQRH---------------------------------- 78 (192)
T ss_dssp TTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHHT----------------------------------
T ss_pred CCCEEEEECCCCCHHHHHHHHhcCEEEEEECCHHHHHHHHHHHHHc----------------------------------
Confidence 5679999999999999999999999999999999998776322100
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCCC
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQED 348 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~ 348 (397)
....++.+..+|+.+... ..+.||+|++...+ +++..+++.+.++|||||+++-..+.
T Consensus 79 ----~~~~~~~~~~~d~~~~~~---~~~~~D~v~~~~~~---~~~~~~l~~~~~~l~~gG~l~~~~~~------------ 136 (192)
T 1l3i_A 79 ----GLGDNVTLMEGDAPEALC---KIPDIDIAVVGGSG---GELQEILRIIKDKLKPGGRIIVTAIL------------ 136 (192)
T ss_dssp ----TCCTTEEEEESCHHHHHT---TSCCEEEEEESCCT---TCHHHHHHHHHHTEEEEEEEEEEECB------------
T ss_pred ----CCCcceEEEecCHHHhcc---cCCCCCEEEECCch---HHHHHHHHHHHHhcCCCcEEEEEecC------------
Confidence 001236778889877322 12589999976544 35678999999999999999842211
Q ss_pred CccccCCHHHHHHHHHhCCCEEEE
Q 015966 349 EMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 349 ~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
.-+.+++.+++++.||++..
T Consensus 137 ----~~~~~~~~~~l~~~g~~~~~ 156 (192)
T 1l3i_A 137 ----LETKFEAMECLRDLGFDVNI 156 (192)
T ss_dssp ----HHHHHHHHHHHHHTTCCCEE
T ss_pred ----cchHHHHHHHHHHCCCceEE
Confidence 12357888899999996554
|
| >1dus_A MJ0882; hypothetical protein, methanococcus jannaschii, structural genomics, BSGC structure funded by NIH; 1.80A {Methanocaldococcus jannaschii} SCOP: c.66.1.4 | Back alignment and structure |
|---|
Probab=99.37 E-value=7.1e-12 Score=108.92 Aligned_cols=115 Identities=13% Similarity=0.060 Sum_probs=84.4
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~ 253 (397)
..+.|.+.++. .++.+|||+|||+|+++..++++|..|+|+|+|..|+..++..+...
T Consensus 40 ~~~~l~~~~~~---~~~~~vLdiG~G~G~~~~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~------------------- 97 (194)
T 1dus_A 40 GTKILVENVVV---DKDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKLN------------------- 97 (194)
T ss_dssp HHHHHHHHCCC---CTTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHT-------------------
T ss_pred HHHHHHHHccc---CCCCeEEEeCCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHHc-------------------
Confidence 44445554442 25679999999999999999999999999999999998776332110
Q ss_pred CcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC-ChhhHHHHHHHHHHhccCCcEEEE
Q 015966 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID-TAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID-ta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
. ++ ..++.+..+|+.+... .++||+|++..-+. ...++..+++.++++|||||+++-
T Consensus 98 -------~--~~---------~~~~~~~~~d~~~~~~----~~~~D~v~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~ 155 (194)
T 1dus_A 98 -------N--LD---------NYDIRVVHSDLYENVK----DRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIWV 155 (194)
T ss_dssp -------T--CT---------TSCEEEEECSTTTTCT----TSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred -------C--CC---------ccceEEEECchhcccc----cCCceEEEECCCcccchhHHHHHHHHHHHHcCCCCEEEE
Confidence 0 00 0026778889877432 47899999865333 356688999999999999999995
|
| >2fyt_A Protein arginine N-methyltransferase 3; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.6 PDB: 3smq_A* 1f3l_A* | Back alignment and structure |
|---|
Probab=99.37 E-value=2.8e-12 Score=126.04 Aligned_cols=101 Identities=18% Similarity=0.220 Sum_probs=79.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|.++..+|++|. .|+|+|+|. |+..|+-.+.. +
T Consensus 64 ~~~~VLDiGcGtG~ls~~la~~g~~~v~gvD~s~-~~~~a~~~~~~----~----------------------------- 109 (340)
T 2fyt_A 64 KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSE-ILYQAMDIIRL----N----------------------------- 109 (340)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESST-HHHHHHHHHHH----T-----------------------------
T ss_pred CCCEEEEeeccCcHHHHHHHHcCCCEEEEEChHH-HHHHHHHHHHH----c-----------------------------
Confidence 567999999999999999999997 899999996 98776633211 0
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee---ccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
....++.++.+|+.++.. ..++||+|++.. ++....++..+++.+.++|||||++|
T Consensus 110 -----~~~~~i~~~~~d~~~~~~---~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 168 (340)
T 2fyt_A 110 -----KLEDTITLIKGKIEEVHL---PVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 168 (340)
T ss_dssp -----TCTTTEEEEESCTTTSCC---SCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred -----CCCCcEEEEEeeHHHhcC---CCCcEEEEEEcCchhhccCHHHHHHHHHHHHhhcCCCcEEE
Confidence 011237889999887632 247899999754 67666678889999999999999998
|
| >3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} | Back alignment and structure |
|---|
Probab=99.37 E-value=6.6e-12 Score=123.70 Aligned_cols=144 Identities=15% Similarity=0.173 Sum_probs=100.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
...+|||+|||+|.++..|+++ +..++|+|+ +.|+..|+-.+..
T Consensus 179 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~--------------------------------- 224 (363)
T 3dp7_A 179 HPKRLLDIGGNTGKWATQCVQYNKEVEVTIVDL-PQQLEMMRKQTAG--------------------------------- 224 (363)
T ss_dssp CCSEEEEESCTTCHHHHHHHHHSTTCEEEEEEC-HHHHHHHHHHHTT---------------------------------
T ss_pred CCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeC-HHHHHHHHHHHHh---------------------------------
Confidence 4579999999999999999995 678999999 9998776622110
Q ss_pred CCCCCCCCCCcceeEeccccccc-CCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCCcEEEEecCCc----ch
Q 015966 267 IHPASAGITEGFSMCGGDFVEVY-SDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLL----YH 339 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely-~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPGG~wIN~GPLl----Yh 339 (397)
.....++.+..|||.+.. .. .+.||+|+....+. ..++....|+.++++|||||++|-..+.. ..
T Consensus 225 -----~~~~~~v~~~~~d~~~~~~~~---p~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~ 296 (363)
T 3dp7_A 225 -----LSGSERIHGHGANLLDRDVPF---PTGFDAVWMSQFLDCFSEEEVISILTRVAQSIGKDSKVYIMETLWDRQRYE 296 (363)
T ss_dssp -----CTTGGGEEEEECCCCSSSCCC---CCCCSEEEEESCSTTSCHHHHHHHHHHHHHHCCTTCEEEEEECCTTSCSSH
T ss_pred -----cCcccceEEEEccccccCCCC---CCCcCEEEEechhhhCCHHHHHHHHHHHHHhcCCCcEEEEEeeccCCcccc
Confidence 011234889999998742 11 26899999887665 44567889999999999999998532211 00
Q ss_pred ---h----hhc-c-CCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 340 ---F----ADL-Y-GQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 340 ---~----~d~-~-g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
+ ... . ........+.|.+|++++++++||++++..
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~AGf~~v~~~ 340 (363)
T 3dp7_A 297 TASYCLTQISLYFTAMANGNSKMFHSDDLIRCIENAGLEVEEIQ 340 (363)
T ss_dssp HHHHHHHHHHHHHHHSSCSSCCSCCHHHHHHHHHTTTEEESCCC
T ss_pred chhhHHHHhhhhHHhhhCCCCcccCHHHHHHHHHHcCCeEEEEE
Confidence 0 000 0 000111346799999999999999988754
|
| >3iv6_A Putative Zn-dependent alcohol dehydrogenase; alpha/beta fold, rossmann-fold, structural genomics, PSI-2, structure initiative; HET: SAM; 2.70A {Rhodobacter sphaeroides} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.1e-12 Score=123.85 Aligned_cols=109 Identities=17% Similarity=0.010 Sum_probs=76.0
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~ 253 (397)
+++.+.+.++. .++.+|||+|||+|+++..||++|+.|+|+|+|..|+..++-.+. ..
T Consensus 33 ~~~~il~~l~l---~~g~~VLDlGcGtG~~a~~La~~g~~V~gvD~S~~ml~~Ar~~~~---~~---------------- 90 (261)
T 3iv6_A 33 DRENDIFLENI---VPGSTVAVIGASTRFLIEKALERGASVTVFDFSQRMCDDLAEALA---DR---------------- 90 (261)
T ss_dssp HHHHHHHTTTC---CTTCEEEEECTTCHHHHHHHHHTTCEEEEEESCHHHHHHHHHHTS---SS----------------
T ss_pred HHHHHHHhcCC---CCcCEEEEEeCcchHHHHHHHhcCCEEEEEECCHHHHHHHHHHHH---hc----------------
Confidence 33444444432 257799999999999999999999999999999999987762110 00
Q ss_pred CcccCccccccCCCCCCCCCCCCcceeEecccccccC--CCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCCcE
Q 015966 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS--DPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGV 329 (397)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~--~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPGG~ 329 (397)
.+.+++.++.. .....++||+|++++.+. ..+++..+++.+.++| |||+
T Consensus 91 --------------------------~v~~~~~~~~~~~~~~~~~~fD~Vv~~~~l~~~~~~~~~~~l~~l~~lL-PGG~ 143 (261)
T 3iv6_A 91 --------------------------CVTIDLLDITAEIPKELAGHFDFVLNDRLINRFTTEEARRACLGMLSLV-GSGT 143 (261)
T ss_dssp --------------------------CCEEEECCTTSCCCGGGTTCCSEEEEESCGGGSCHHHHHHHHHHHHHHH-TTSE
T ss_pred --------------------------cceeeeeecccccccccCCCccEEEEhhhhHhCCHHHHHHHHHHHHHhC-cCcE
Confidence 01122222110 001247899999987553 4456888999999999 9999
Q ss_pred EE
Q 015966 330 WI 331 (397)
Q Consensus 330 wI 331 (397)
++
T Consensus 144 l~ 145 (261)
T 3iv6_A 144 VR 145 (261)
T ss_dssp EE
T ss_pred EE
Confidence 98
|
| >3lpm_A Putative methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; 2.40A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.36 E-value=1.2e-11 Score=115.75 Aligned_cols=131 Identities=15% Similarity=0.112 Sum_probs=96.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|.++..||+++. .|+|+|+|..|+..|+..+.. +
T Consensus 49 ~~~~vLDlG~G~G~~~~~la~~~~~~v~gvDi~~~~~~~a~~n~~~----~----------------------------- 95 (259)
T 3lpm_A 49 RKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAY----N----------------------------- 95 (259)
T ss_dssp SCCEEEETTCTTTHHHHHHHTTCCCEEEEECCSHHHHHHHHHHHHH----T-----------------------------
T ss_pred CCCEEEEcCCchhHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHH----C-----------------------------
Confidence 467999999999999999999987 899999999999877632210 0
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--eccC------------------ChhhHHHHHHHHHHhccCC
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFID------------------TAHNIVEYIEIISRILKDG 327 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFID------------------ta~Ni~~yi~~I~~~LKPG 327 (397)
....++.++.+|+.++.. ....++||+|+++ ||.. ...++.++++.+.++||||
T Consensus 96 -----~~~~~v~~~~~D~~~~~~-~~~~~~fD~Ii~npPy~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~Lkpg 169 (259)
T 3lpm_A 96 -----QLEDQIEIIEYDLKKITD-LIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVAASLLKQG 169 (259)
T ss_dssp -----TCTTTEEEECSCGGGGGG-TSCTTCEEEEEECCCC-----------------------HHHHHHHHHHHHHEEEE
T ss_pred -----CCcccEEEEECcHHHhhh-hhccCCccEEEECCCCCCCccccCCCCchHHHhhhccccCCHHHHHHHHHHHccCC
Confidence 011247889999988642 1225789999986 4322 0134668999999999999
Q ss_pred cEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 328 GVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 328 G~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
|+++-+-| .-..+++..++++.||.......
T Consensus 170 G~l~~~~~-----------------~~~~~~~~~~l~~~~~~~~~~~~ 200 (259)
T 3lpm_A 170 GKANFVHR-----------------PERLLDIIDIMRKYRLEPKRIQF 200 (259)
T ss_dssp EEEEEEEC-----------------TTTHHHHHHHHHHTTEEEEEEEE
T ss_pred cEEEEEEc-----------------HHHHHHHHHHHHHCCCceEEEEE
Confidence 99995211 13467889999999999887543
|
| >3q7e_A Protein arginine N-methyltransferase 1; HET: SAH; 2.20A {Rattus norvegicus} PDB: 1orh_A* 1ori_A* 1or8_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.7e-12 Score=126.50 Aligned_cols=101 Identities=17% Similarity=0.157 Sum_probs=79.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|.++..+|++|. .|+|+|+| .|+..|+-.....
T Consensus 66 ~~~~VLDvGcG~G~~~~~la~~g~~~v~gvD~s-~~l~~a~~~~~~~--------------------------------- 111 (349)
T 3q7e_A 66 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECS-SISDYAVKIVKAN--------------------------------- 111 (349)
T ss_dssp TTCEEEEESCTTSHHHHHHHHTTCSEEEEEECS-THHHHHHHHHHHT---------------------------------
T ss_pred CCCEEEEEeccchHHHHHHHHCCCCEEEEECcH-HHHHHHHHHHHHc---------------------------------
Confidence 467999999999999999999998 89999999 5988776433210
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee---ccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
...+++.++.+|+.++- . ..++||+|++.. ++.....+..+++.+.++|||||++|
T Consensus 112 -----~~~~~v~~~~~d~~~~~-~--~~~~fD~Iis~~~~~~l~~~~~~~~~l~~~~r~LkpgG~li 170 (349)
T 3q7e_A 112 -----KLDHVVTIIKGKVEEVE-L--PVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 170 (349)
T ss_dssp -----TCTTTEEEEESCTTTCC-C--SSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred -----CCCCcEEEEECcHHHcc-C--CCCceEEEEEccccccccCchhHHHHHHHHHHhCCCCCEEc
Confidence 01123788999998862 2 258999999853 46555678899999999999999998
|
| >1jsx_A Glucose-inhibited division protein B; methyltransferase fold, structural genomics, PSI, protein structure initiative; 2.40A {Escherichia coli} SCOP: c.66.1.20 | Back alignment and structure |
|---|
Probab=99.35 E-value=8.6e-12 Score=111.22 Aligned_cols=118 Identities=12% Similarity=0.120 Sum_probs=88.4
Q ss_pred CCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 190 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
+.+|||+|||+|.++..+++. +..|+|+|+|..|+..++..+... .
T Consensus 66 ~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~----------------------------~---- 113 (207)
T 1jsx_A 66 GERFIDVGTGPGLPGIPLSIVRPEAHFTLLDSLGKRVRFLRQVQHEL----------------------------K---- 113 (207)
T ss_dssp SSEEEEETCTTTTTHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHT----------------------------T----
T ss_pred CCeEEEECCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHc----------------------------C----
Confidence 569999999999999999987 789999999999998776332110 0
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe-cCCcchhhhccCC
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL-GPLLYHFADLYGQ 346 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~-GPLlYh~~d~~g~ 346 (397)
. .++.+..+|+.++.. .++||+|++..+ .++..+++.+.++|||||+++-. |+
T Consensus 114 ------~-~~v~~~~~d~~~~~~----~~~~D~i~~~~~----~~~~~~l~~~~~~L~~gG~l~~~~~~----------- 167 (207)
T 1jsx_A 114 ------L-ENIEPVQSRVEEFPS----EPPFDGVISRAF----ASLNDMVSWCHHLPGEQGRFYALKGQ----------- 167 (207)
T ss_dssp ------C-SSEEEEECCTTTSCC----CSCEEEEECSCS----SSHHHHHHHHTTSEEEEEEEEEEESS-----------
T ss_pred ------C-CCeEEEecchhhCCc----cCCcCEEEEecc----CCHHHHHHHHHHhcCCCcEEEEEeCC-----------
Confidence 0 126788899877531 468999986443 44678999999999999999842 11
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 347 EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 347 ~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
...+++.+++. ||++++..
T Consensus 168 -------~~~~~~~~~~~--g~~~~~~~ 186 (207)
T 1jsx_A 168 -------MPEDEIALLPE--EYQVESVV 186 (207)
T ss_dssp -------CCHHHHHTSCT--TEEEEEEE
T ss_pred -------CchHHHHHHhc--CCceeeee
Confidence 34567777665 99988754
|
| >1g6q_1 HnRNP arginine N-methyltransferase; SAM-binding domain, beta-barrel, mixed alpha-beta, hexamer; 2.90A {Saccharomyces cerevisiae} SCOP: c.66.1.6 | Back alignment and structure |
|---|
Probab=99.34 E-value=5.5e-12 Score=123.11 Aligned_cols=101 Identities=16% Similarity=0.252 Sum_probs=78.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|.++..+|++|. .|+|+|+| .|+..|+-.+...
T Consensus 38 ~~~~VLDiGcGtG~ls~~la~~g~~~v~~vD~s-~~~~~a~~~~~~~--------------------------------- 83 (328)
T 1g6q_1 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMS-SIIEMAKELVELN--------------------------------- 83 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESS-THHHHHHHHHHHT---------------------------------
T ss_pred CCCEEEEecCccHHHHHHHHHCCCCEEEEEChH-HHHHHHHHHHHHc---------------------------------
Confidence 456999999999999999999997 89999999 6987766332110
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe---eccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~---FFIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
....++.++.+|+.++.. ..++||+|++. +++.....+..+++.+.++|||||++|
T Consensus 84 -----~~~~~i~~~~~d~~~~~~---~~~~~D~Ivs~~~~~~l~~~~~~~~~l~~~~~~LkpgG~li 142 (328)
T 1g6q_1 84 -----GFSDKITLLRGKLEDVHL---PFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp -----TCTTTEEEEESCTTTSCC---SSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred -----CCCCCEEEEECchhhccC---CCCcccEEEEeCchhhcccHHHHHHHHHHHHhhcCCCeEEE
Confidence 011237789999887632 24789999986 456555667889999999999999998
|
| >3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=6.9e-12 Score=122.94 Aligned_cols=98 Identities=17% Similarity=0.174 Sum_probs=77.4
Q ss_pred CCCCeEEEecCCCChhH-HHHHH-cCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 188 ESPPACLVPGAGLGRLA-LEISH-LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 188 ~~~~rVLvPGCGlGRLa-~eLA~-~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
.++.+|||+|||+|.++ ..+|+ .|..|+|+|+|..|+..|+-.+...
T Consensus 121 ~~g~rVLDIGcG~G~~ta~~lA~~~ga~V~gIDis~~~l~~Ar~~~~~~------------------------------- 169 (298)
T 3fpf_A 121 RRGERAVFIGGGPLPLTGILLSHVYGMRVNVVEIEPDIAELSRKVIEGL------------------------------- 169 (298)
T ss_dssp CTTCEEEEECCCSSCHHHHHHHHTTCCEEEEEESSHHHHHHHHHHHHHH-------------------------------
T ss_pred CCcCEEEEECCCccHHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHhc-------------------------------
Confidence 47889999999999875 56676 4999999999999999887433210
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
.. .++.++.||+.++- ++.||+|+.... .++..++++.++++|||||+++-
T Consensus 170 -------gl-~~v~~v~gDa~~l~-----d~~FDvV~~~a~---~~d~~~~l~el~r~LkPGG~Lvv 220 (298)
T 3fpf_A 170 -------GV-DGVNVITGDETVID-----GLEFDVLMVAAL---AEPKRRVFRNIHRYVDTETRIIY 220 (298)
T ss_dssp -------TC-CSEEEEESCGGGGG-----GCCCSEEEECTT---CSCHHHHHHHHHHHCCTTCEEEE
T ss_pred -------CC-CCeEEEECchhhCC-----CCCcCEEEECCC---ccCHHHHHHHHHHHcCCCcEEEE
Confidence 11 24788999998852 478999987544 35677999999999999999995
|
| >3opn_A Putative hemolysin; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics, nysgxrc; 2.05A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=99.34 E-value=4.5e-13 Score=125.52 Aligned_cols=152 Identities=14% Similarity=0.152 Sum_probs=88.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|+++..|+++|. .|+|+|+|+.||..+... ... .. ...
T Consensus 37 ~g~~VLDiGcGtG~~t~~la~~g~~~V~gvDis~~ml~~a~~~---~~~---~~-------------------~~~---- 87 (232)
T 3opn_A 37 NGKTCLDIGSSTGGFTDVMLQNGAKLVYALDVGTNQLAWKIRS---DER---VV-------------------VME---- 87 (232)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSCCCCCHHHHT---CTT---EE-------------------EEC----
T ss_pred CCCEEEEEccCCCHHHHHHHhcCCCEEEEEcCCHHHHHHHHHh---Ccc---cc-------------------ccc----
Confidence 467999999999999999999996 999999999998654310 000 00 000
Q ss_pred CCCCCCCCCcceeEe-cccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE-ecCCcchhh-hcc
Q 015966 268 HPASAGITEGFSMCG-GDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN-LGPLLYHFA-DLY 344 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~-GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN-~GPLlYh~~-d~~ 344 (397)
..++.++. +|+.... .....||+|+.. +..+++.++++|||||.++- +.|. |... ...
T Consensus 88 -------~~~~~~~~~~~~~~~~---~d~~~~D~v~~~--------l~~~l~~i~rvLkpgG~lv~~~~p~-~e~~~~~~ 148 (232)
T 3opn_A 88 -------QFNFRNAVLADFEQGR---PSFTSIDVSFIS--------LDLILPPLYEILEKNGEVAALIKPQ-FEAGREQV 148 (232)
T ss_dssp -------SCCGGGCCGGGCCSCC---CSEEEECCSSSC--------GGGTHHHHHHHSCTTCEEEEEECHH-HHSCHHHH
T ss_pred -------cceEEEeCHhHcCcCC---CCEEEEEEEhhh--------HHHHHHHHHHhccCCCEEEEEECcc-cccCHHHh
Confidence 00111122 3322100 012344544322 25789999999999999985 3332 1110 001
Q ss_pred CC--C--CCccccCCHHHHHHHHHhCCCEEEEEe-ecCCCCCCCccccc
Q 015966 345 GQ--E--DEMSIELSLEDVKRVALHYGFEFEKEK-TIETTYTTNPRSMM 388 (397)
Q Consensus 345 g~--~--~~~~ieLS~EEl~~ll~~~GFeii~e~-~i~~~Y~~d~~sm~ 388 (397)
+. . +......+.+++.+++++.||+++... ...++.-.|.+-++
T Consensus 149 ~~~G~~~d~~~~~~~~~~l~~~l~~aGf~v~~~~~~pi~g~~gn~e~l~ 197 (232)
T 3opn_A 149 GKNGIIRDPKVHQMTIEKVLKTATQLGFSVKGLTFSPIKGGAGNVEFLV 197 (232)
T ss_dssp C-CCCCCCHHHHHHHHHHHHHHHHHHTEEEEEEEECSSCBTTTBCCEEE
T ss_pred CcCCeecCcchhHHHHHHHHHHHHHCCCEEEEEEEccCCCCCCCHHHHH
Confidence 10 0 111223589999999999999998854 33333334444443
|
| >2frn_A Hypothetical protein PH0793; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pyrococcus horikoshii OT3} PDB: 3k6r_A 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=99.34 E-value=5.1e-12 Score=120.46 Aligned_cols=128 Identities=20% Similarity=0.196 Sum_probs=94.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|.++..+|++|.. |+|+|+|..|+..|+..+.. +
T Consensus 125 ~~~~VLDlgcG~G~~~~~la~~~~~~V~~vD~s~~~~~~a~~n~~~----n----------------------------- 171 (278)
T 2frn_A 125 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHL----N----------------------------- 171 (278)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHHH----T-----------------------------
T ss_pred CCCEEEEecccCCHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHH----c-----------------------------
Confidence 4679999999999999999999985 99999999999877632110 0
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCC
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 347 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~ 347 (397)
...+.+.++.+|+.++.. .++||+|++.. .....++++.+.++|||||+++-. .+... +
T Consensus 172 -----~~~~~v~~~~~D~~~~~~----~~~fD~Vi~~~----p~~~~~~l~~~~~~LkpgG~l~~~-----~~~~~-~-- 230 (278)
T 2frn_A 172 -----KVEDRMSAYNMDNRDFPG----ENIADRILMGY----VVRTHEFIPKALSIAKDGAIIHYH-----NTVPE-K-- 230 (278)
T ss_dssp -----TCTTTEEEECSCTTTCCC----CSCEEEEEECC----CSSGGGGHHHHHHHEEEEEEEEEE-----EEEEG-G--
T ss_pred -----CCCceEEEEECCHHHhcc----cCCccEEEECC----chhHHHHHHHHHHHCCCCeEEEEE-----Eeecc-c--
Confidence 011236789999888642 57899998743 233457899999999999999941 11100 0
Q ss_pred CCccccCCHHHHHHHHHhCCCEEEE
Q 015966 348 DEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 348 ~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
....-..+++.+++++.||++..
T Consensus 231 --~~~~~~~~~i~~~~~~~G~~~~~ 253 (278)
T 2frn_A 231 --LMPREPFETFKRITKEYGYDVEK 253 (278)
T ss_dssp --GTTTTTHHHHHHHHHHTTCEEEE
T ss_pred --cccccHHHHHHHHHHHcCCeeEE
Confidence 01234678999999999999876
|
| >1g8a_A Fibrillarin-like PRE-rRNA processing protein; rRNA binding, RNA binding, structural genomics, BSGC structure funded by NIH; 1.40A {Pyrococcus horikoshii} SCOP: c.66.1.3 PDB: 2nnw_B 3nmu_F* 3nvk_I* 3nvm_B 1pry_A | Back alignment and structure |
|---|
Probab=99.34 E-value=2.8e-11 Score=110.07 Aligned_cols=141 Identities=18% Similarity=0.128 Sum_probs=92.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|.++..||++ | ..|+|+|+|..|+..+.-.. ..
T Consensus 73 ~~~~vLDlG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~~~~~~---~~----------------------------- 120 (227)
T 1g8a_A 73 PGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIV---EE----------------------------- 120 (227)
T ss_dssp TTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHH---SS-----------------------------
T ss_pred CCCEEEEEeccCCHHHHHHHHHhCCCeEEEEEECCHHHHHHHHHHH---hc-----------------------------
Confidence 5679999999999999999987 3 68999999999986554211 00
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccC
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g 345 (397)
..++.++.+|+.+........++||+|++... .......+++.++++|||||+++-. +.......
T Consensus 121 ---------~~~v~~~~~d~~~~~~~~~~~~~~D~v~~~~~--~~~~~~~~l~~~~~~LkpgG~l~~~----~~~~~~~~ 185 (227)
T 1g8a_A 121 ---------RRNIVPILGDATKPEEYRALVPKVDVIFEDVA--QPTQAKILIDNAEVYLKRGGYGMIA----VKSRSIDV 185 (227)
T ss_dssp ---------CTTEEEEECCTTCGGGGTTTCCCEEEEEECCC--STTHHHHHHHHHHHHEEEEEEEEEE----EEGGGTCT
T ss_pred ---------cCCCEEEEccCCCcchhhcccCCceEEEECCC--CHhHHHHHHHHHHHhcCCCCEEEEE----EecCCCCC
Confidence 01267788888763210112358999996543 2222345699999999999999853 22111100
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEeecCCCCC
Q 015966 346 QEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYT 381 (397)
Q Consensus 346 ~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~~~Y~ 381 (397)
..+ ...++.+++..+ .+. |++++.... .+|.
T Consensus 186 ~~~--~~~~~~~~l~~l-~~~-f~~~~~~~~-~~~~ 216 (227)
T 1g8a_A 186 TKE--PEQVFREVEREL-SEY-FEVIERLNL-EPYE 216 (227)
T ss_dssp TSC--HHHHHHHHHHHH-HTT-SEEEEEEEC-TTTS
T ss_pred CCC--hhhhhHHHHHHH-Hhh-ceeeeEecc-Cccc
Confidence 111 225677889888 666 999876543 3443
|
| >3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405} | Back alignment and structure |
|---|
Probab=99.33 E-value=6.7e-12 Score=111.34 Aligned_cols=104 Identities=11% Similarity=0.086 Sum_probs=79.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|.++..|+++ | -.|+|+|+|..|+..++-.+...
T Consensus 22 ~~~~vLDlGcG~G~~~~~l~~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------------------------------- 70 (197)
T 3eey_A 22 EGDTVVDATCGNGNDTAFLASLVGENGRVFGFDIQDKAIANTTKKLTDL------------------------------- 70 (197)
T ss_dssp TTCEEEESCCTTSHHHHHHHHHHCTTCEEEEECSCHHHHHHHHHHHHHT-------------------------------
T ss_pred CCCEEEEcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc-------------------------------
Confidence 5679999999999999999997 2 48999999999998776332110
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-c--------cCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-F--------IDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-F--------IDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
....++.++.+|+.++... ..++||+|++.. | +....+..++++.+.++|||||+++-
T Consensus 71 -------~~~~~v~~~~~d~~~~~~~--~~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~ 137 (197)
T 3eey_A 71 -------NLIDRVTLIKDGHQNMDKY--IDCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITV 137 (197)
T ss_dssp -------TCGGGEEEECSCGGGGGGT--CCSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred -------CCCCCeEEEECCHHHHhhh--ccCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEE
Confidence 0012378899998876421 247899999775 2 23444667899999999999999985
|
| >3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=99.33 E-value=1.9e-11 Score=118.70 Aligned_cols=143 Identities=12% Similarity=0.063 Sum_probs=99.6
Q ss_pred CCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 190 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
..+|||+|||+|.++..|+++ +..++++|+ ..|+..++..+...
T Consensus 180 ~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~--------------------------------- 225 (352)
T 3mcz_A 180 ARTVIDLAGGHGTYLAQVLRRHPQLTGQIWDL-PTTRDAARKTIHAH--------------------------------- 225 (352)
T ss_dssp CCEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHT---------------------------------
T ss_pred CCEEEEeCCCcCHHHHHHHHhCCCCeEEEEEC-HHHHHHHHHHHHhc---------------------------------
Confidence 689999999999999999998 678999999 77987666322110
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCCcEEEEecCCc--------
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLL-------- 337 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPGG~wIN~GPLl-------- 337 (397)
....++.+..+||.+... ...+.||+|+....+. ..++....++.++++|||||++|-..+.+
T Consensus 226 -----~~~~~v~~~~~d~~~~~~--~~~~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~~ 298 (352)
T 3mcz_A 226 -----DLGGRVEFFEKNLLDARN--FEGGAADVVMLNDCLHYFDAREAREVIGHAAGLVKPGGALLILTMTMNDDRVTPA 298 (352)
T ss_dssp -----TCGGGEEEEECCTTCGGG--GTTCCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEEECCCTTSSSSH
T ss_pred -----CCCCceEEEeCCcccCcc--cCCCCccEEEEecccccCCHHHHHHHHHHHHHHcCCCCEEEEEEeccCCCCCCCc
Confidence 012347889999987531 0135699999876554 34457899999999999999998532111
Q ss_pred ch-hhhc-cCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 338 YH-FADL-YGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 338 Yh-~~d~-~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
+. +.+. .........+.|.+|++++++++||++++.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~ 336 (352)
T 3mcz_A 299 LSADFSLHMMVNTNHGELHPTPWIAGVVRDAGLAVGER 336 (352)
T ss_dssp HHHHHHHHHHHHSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred hHHHhhHHHHhhCCCCCcCCHHHHHHHHHHCCCceeee
Confidence 00 0000 000000134689999999999999999884
|
| >1ws6_A Methyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Thermus thermophilus} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.33 E-value=3.5e-12 Score=109.50 Aligned_cols=100 Identities=14% Similarity=0.100 Sum_probs=71.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|.++..++++|..|+|+|+|..|+..++..+... .
T Consensus 41 ~~~~vLD~GcG~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~--------------------------~------- 87 (171)
T 1ws6_A 41 RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKENVRRT--------------------------G------- 87 (171)
T ss_dssp TCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHH--------------------------T-------
T ss_pred CCCeEEEeCCCcCHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHc--------------------------C-------
Confidence 3568999999999999999999999999999999998776322110 0
Q ss_pred CCCCCCCCcceeEecccccccC-CCCCCCCccEEEEe--eccCChhhHHHHHHHHH--HhccCCcEEEE
Q 015966 269 PASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTC--FFIDTAHNIVEYIEIIS--RILKDGGVWIN 332 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~-~~~~~~~fD~VvT~--FFIDta~Ni~~yi~~I~--~~LKPGG~wIN 332 (397)
. ++.++.+|+.+... .+...++||+|++. |. .... +.++.+. ++|||||+++-
T Consensus 88 -----~--~~~~~~~d~~~~~~~~~~~~~~~D~i~~~~~~~-~~~~---~~~~~~~~~~~L~~gG~~~~ 145 (171)
T 1ws6_A 88 -----L--GARVVALPVEVFLPEAKAQGERFTVAFMAPPYA-MDLA---ALFGELLASGLVEAGGLYVL 145 (171)
T ss_dssp -----C--CCEEECSCHHHHHHHHHHTTCCEEEEEECCCTT-SCTT---HHHHHHHHHTCEEEEEEEEE
T ss_pred -----C--ceEEEeccHHHHHHhhhccCCceEEEEECCCCc-hhHH---HHHHHHHhhcccCCCcEEEE
Confidence 0 25778888877421 01112479999987 43 3333 4455555 99999999984
|
| >2yxd_A Probable cobalt-precorrin-6Y C(15)-methyltransfer [decarboxylating]; alpha and beta protein (A/B) class; HET: MES; 2.30A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.33 E-value=2.5e-11 Score=104.79 Aligned_cols=132 Identities=12% Similarity=0.051 Sum_probs=96.3
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~ 253 (397)
+.+.+.+.++. .++.+|||+|||+|.++..+++.+..|+|+|+|..|+..++..+...
T Consensus 23 ~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~------------------- 80 (183)
T 2yxd_A 23 IRAVSIGKLNL---NKDDVVVDVGCGSGGMTVEIAKRCKFVYAIDYLDGAIEVTKQNLAKF------------------- 80 (183)
T ss_dssp HHHHHHHHHCC---CTTCEEEEESCCCSHHHHHHHTTSSEEEEEECSHHHHHHHHHHHHHT-------------------
T ss_pred HHHHHHHHcCC---CCCCEEEEeCCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHc-------------------
Confidence 44444444432 25679999999999999999998889999999999998776322100
Q ss_pred CcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe
Q 015966 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 333 (397)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~ 333 (397)
. . .++.+..+|+.+... .+.||+|++... .++.++++.++++ |||++|-.
T Consensus 81 -------~------------~-~~~~~~~~d~~~~~~----~~~~D~i~~~~~----~~~~~~l~~~~~~--~gG~l~~~ 130 (183)
T 2yxd_A 81 -------N------------I-KNCQIIKGRAEDVLD----KLEFNKAFIGGT----KNIEKIIEILDKK--KINHIVAN 130 (183)
T ss_dssp -------T------------C-CSEEEEESCHHHHGG----GCCCSEEEECSC----SCHHHHHHHHHHT--TCCEEEEE
T ss_pred -------C------------C-CcEEEEECCcccccc----CCCCcEEEECCc----ccHHHHHHHHhhC--CCCEEEEE
Confidence 0 0 126788899887432 368999988765 5677899999998 99999953
Q ss_pred cCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 334 GPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 334 GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
.+. .-..+++.+++++.||++...
T Consensus 131 ~~~----------------~~~~~~~~~~l~~~g~~~~~~ 154 (183)
T 2yxd_A 131 TIV----------------LENAAKIINEFESRGYNVDAV 154 (183)
T ss_dssp ESC----------------HHHHHHHHHHHHHTTCEEEEE
T ss_pred ecc----------------cccHHHHHHHHHHcCCeEEEE
Confidence 221 113577899999999988764
|
| >2fca_A TRNA (guanine-N(7)-)-methyltransferase; 2.10A {Bacillus subtilis} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-11 Score=112.47 Aligned_cols=128 Identities=13% Similarity=0.135 Sum_probs=88.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++..||++ +..|+|+|+|..|+..|+-.+... .
T Consensus 38 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~giD~s~~~l~~a~~~~~~~--------------------------~----- 86 (213)
T 2fca_A 38 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKVKDS--------------------------E----- 86 (213)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHS--------------------------C-----
T ss_pred CCceEEEEecCCCHHHHHHHHHCCCCCEEEEEechHHHHHHHHHHHHc--------------------------C-----
Confidence 4678999999999999999998 789999999999998776322100 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCCh----h---h--HHHHHHHHHHhccCCcEEEEecCCc
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA----H---N--IVEYIEIISRILKDGGVWINLGPLL 337 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta----~---N--i~~yi~~I~~~LKPGG~wIN~GPLl 337 (397)
..++.++.+|+.++.. ....++||.|+.+| -+.- + . ...+++.++++|||||+++-..+
T Consensus 87 --------~~nv~~~~~d~~~l~~-~~~~~~~d~v~~~~-~~p~~~~~~~~~rl~~~~~l~~~~~~LkpgG~l~~~td-- 154 (213)
T 2fca_A 87 --------AQNVKLLNIDADTLTD-VFEPGEVKRVYLNF-SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFKTD-- 154 (213)
T ss_dssp --------CSSEEEECCCGGGHHH-HCCTTSCCEEEEES-CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEEES--
T ss_pred --------CCCEEEEeCCHHHHHh-hcCcCCcCEEEEEC-CCCCcCccccccccCcHHHHHHHHHHcCCCCEEEEEeC--
Confidence 0136788899877521 01247899987654 2220 0 0 25789999999999999984211
Q ss_pred chhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 338 YHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 338 Yh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
..--.+++.+++.+.||++...
T Consensus 155 --------------~~~~~~~~~~~~~~~g~~~~~~ 176 (213)
T 2fca_A 155 --------------NRGLFEYSLKSFSEYGLLLTYV 176 (213)
T ss_dssp --------------CHHHHHHHHHHHHHHTCEEEEE
T ss_pred --------------CHHHHHHHHHHHHHCCCccccc
Confidence 0112356667777889988764
|
| >3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C* | Back alignment and structure |
|---|
Probab=99.32 E-value=7.2e-12 Score=115.68 Aligned_cols=138 Identities=14% Similarity=0.073 Sum_probs=100.0
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCcccccccc
Q 015966 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWI 246 (397)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi 246 (397)
.|+..+..+...+.. .++.+|||+|||+|.++..++++ +..|+|+|+|..|+..|+-.+...
T Consensus 77 ~~~~~~~~i~~~~~~---~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~------------ 141 (255)
T 3mb5_A 77 VHPKDAALIVAYAGI---SPGDFIVEAGVGSGALTLFLANIVGPEGRVVSYEIREDFAKLAWENIKWA------------ 141 (255)
T ss_dssp CCHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHH------------
T ss_pred ccHhHHHHHHHhhCC---CCCCEEEEecCCchHHHHHHHHHhCCCeEEEEEecCHHHHHHHHHHHHHc------------
Confidence 455555666655542 26779999999999999999999 789999999999998776332110
Q ss_pred ccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccC
Q 015966 247 HSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKD 326 (397)
Q Consensus 247 ~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKP 326 (397)
...+++.+..+|+.+... .++||+|+.. . ++...+++.+.++|||
T Consensus 142 --------------------------~~~~~v~~~~~d~~~~~~----~~~~D~v~~~----~-~~~~~~l~~~~~~L~~ 186 (255)
T 3mb5_A 142 --------------------------GFDDRVTIKLKDIYEGIE----EENVDHVILD----L-PQPERVVEHAAKALKP 186 (255)
T ss_dssp --------------------------TCTTTEEEECSCGGGCCC----CCSEEEEEEC----S-SCGGGGHHHHHHHEEE
T ss_pred --------------------------CCCCceEEEECchhhccC----CCCcCEEEEC----C-CCHHHHHHHHHHHcCC
Confidence 001236788999887532 4789999862 2 3345789999999999
Q ss_pred CcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCC--CEEEEE
Q 015966 327 GGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYG--FEFEKE 373 (397)
Q Consensus 327 GG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~G--Feii~e 373 (397)
||+++-+.|.. -..+++.+.+++.| |..++.
T Consensus 187 gG~l~~~~~~~----------------~~~~~~~~~l~~~g~~f~~~~~ 219 (255)
T 3mb5_A 187 GGFFVAYTPCS----------------NQVMRLHEKLREFKDYFMKPRT 219 (255)
T ss_dssp EEEEEEEESSH----------------HHHHHHHHHHHHTGGGBSCCEE
T ss_pred CCEEEEEECCH----------------HHHHHHHHHHHHcCCCccccEE
Confidence 99999644321 13567888889999 976653
|
| >2ipx_A RRNA 2'-O-methyltransferase fibrillarin; FBL, structural genomics, structural genomics consortium, SGC; HET: MTA; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.32 E-value=2.3e-11 Score=111.47 Aligned_cols=136 Identities=10% Similarity=-0.025 Sum_probs=87.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|.++..||++ +..|+|+|+|..|+..+. +.+...
T Consensus 77 ~~~~vLDlG~G~G~~~~~la~~~g~~~~v~gvD~s~~~i~~~~---~~a~~~---------------------------- 125 (233)
T 2ipx_A 77 PGAKVLYLGAASGTTVSHVSDIVGPDGLVYAVEFSHRSGRDLI---NLAKKR---------------------------- 125 (233)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHCTTCEEEEECCCHHHHHHHH---HHHHHC----------------------------
T ss_pred CCCEEEEEcccCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHH---HHhhcc----------------------------
Confidence 5779999999999999999987 378999999998865332 111100
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccC
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g 345 (397)
.++.++.+|+.+....+...++||+|++... .......+++.+.++|||||+++-. ...-....+
T Consensus 126 ----------~~v~~~~~d~~~~~~~~~~~~~~D~V~~~~~--~~~~~~~~~~~~~~~LkpgG~l~i~---~~~~~~~~~ 190 (233)
T 2ipx_A 126 ----------TNIIPVIEDARHPHKYRMLIAMVDVIFADVA--QPDQTRIVALNAHTFLRNGGHFVIS---IKANCIDST 190 (233)
T ss_dssp ----------TTEEEECSCTTCGGGGGGGCCCEEEEEECCC--CTTHHHHHHHHHHHHEEEEEEEEEE---EEHHHHCSS
T ss_pred ----------CCeEEEEcccCChhhhcccCCcEEEEEEcCC--CccHHHHHHHHHHHHcCCCeEEEEE---EcccccccC
Confidence 1266788888763211123578999997543 2223456788999999999999841 111010111
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 346 QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 346 ~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
.+ ...+-.++ .+++++.||++++..
T Consensus 191 -~~--~~~~~~~~-~~~l~~~Gf~~~~~~ 215 (233)
T 2ipx_A 191 -AS--AEAVFASE-VKKMQQENMKPQEQL 215 (233)
T ss_dssp -SC--HHHHHHHH-HHTTGGGTEEEEEEE
T ss_pred -CC--HHHHHHHH-HHHHHHCCCceEEEE
Confidence 11 11111233 478889999998754
|
| >3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=4e-11 Score=118.33 Aligned_cols=154 Identities=17% Similarity=0.197 Sum_probs=104.1
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 175 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 175 l~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
...|.+.++- .+..+|||+|||+|.++..|+++ +..++++|+ ..|+..++-.+...
T Consensus 191 ~~~l~~~~~~---~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~------------------ 248 (369)
T 3gwz_A 191 AGQVAAAYDF---SGAATAVDIGGGRGSLMAAVLDAFPGLRGTLLER-PPVAEEARELLTGR------------------ 248 (369)
T ss_dssp HHHHHHHSCC---TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT------------------
T ss_pred HHHHHHhCCC---ccCcEEEEeCCCccHHHHHHHHHCCCCeEEEEcC-HHHHHHHHHhhhhc------------------
Confidence 4455555542 25689999999999999999998 668999999 99998776322100
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCCcEE
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVW 330 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPGG~w 330 (397)
....++.+..+||.+.. | ..||+|+....+. ..+...+.++.++++|||||++
T Consensus 249 --------------------~l~~~v~~~~~d~~~~~--p---~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l 303 (369)
T 3gwz_A 249 --------------------GLADRCEILPGDFFETI--P---DGADVYLIKHVLHDWDDDDVVRILRRIATAMKPDSRL 303 (369)
T ss_dssp --------------------TCTTTEEEEECCTTTCC--C---SSCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCEE
T ss_pred --------------------CcCCceEEeccCCCCCC--C---CCceEEEhhhhhccCCHHHHHHHHHHHHHHcCCCCEE
Confidence 11234889999997432 2 3799999876543 2233558999999999999999
Q ss_pred EEecCCcch-------hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 331 INLGPLLYH-------FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 331 IN~GPLlYh-------~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
|-.-+..-. +.+..-......-+.|.+|++++++++||++++...
T Consensus 304 ~i~e~~~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 355 (369)
T 3gwz_A 304 LVIDNLIDERPAASTLFVDLLLLVLVGGAERSESEFAALLEKSGLRVERSLP 355 (369)
T ss_dssp EEEEEBCCSSCCHHHHHHHHHHHHHHSCCCBCHHHHHHHHHTTTEEEEEEEE
T ss_pred EEEEeccCCCCCCchhHhhHHHHhhcCCccCCHHHHHHHHHHCCCeEEEEEE
Confidence 853221100 000000000012368999999999999999998654
|
| >1yzh_A TRNA (guanine-N(7)-)-methyltransferase; alpha-beta-alpha sandwich, S-adenosylmeth dependent, structural genomics, PSI; 2.02A {Streptococcus pneumoniae} SCOP: c.66.1.53 | Back alignment and structure |
|---|
Probab=99.32 E-value=9.5e-12 Score=112.59 Aligned_cols=129 Identities=13% Similarity=0.090 Sum_probs=91.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++..||++ +..|+|+|+|..|+..|+..+... .
T Consensus 41 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~gvD~s~~~l~~a~~~~~~~--------------------------~----- 89 (214)
T 1yzh_A 41 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYALDKVLEV--------------------------G----- 89 (214)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH--------------------------C-----
T ss_pred CCCeEEEEccCcCHHHHHHHHHCCCCCEEEEEcCHHHHHHHHHHHHHc--------------------------C-----
Confidence 4679999999999999999998 579999999999998776322100 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChh---------hHHHHHHHHHHhccCCcEEEEecCCc
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH---------NIVEYIEIISRILKDGGVWINLGPLL 337 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~---------Ni~~yi~~I~~~LKPGG~wIN~GPLl 337 (397)
. .++.++.+|+.++.. ....++||+|++.| .+... ....+++.++++|||||+++-..+.
T Consensus 90 -------~-~~v~~~~~d~~~~~~-~~~~~~~D~i~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~~- 158 (214)
T 1yzh_A 90 -------V-PNIKLLWVDGSDLTD-YFEDGEIDRLYLNF-SDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIHFKTDN- 158 (214)
T ss_dssp -------C-SSEEEEECCSSCGGG-TSCTTCCSEEEEES-CCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEEEEESC-
T ss_pred -------C-CCEEEEeCCHHHHHh-hcCCCCCCEEEEEC-CCCccccchhhhccCCHHHHHHHHHHcCCCcEEEEEeCC-
Confidence 0 136788899877431 01257899999875 33210 1247899999999999998841110
Q ss_pred chhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 338 YHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 338 Yh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
.--.+++.+++++.||+++...
T Consensus 159 ---------------~~~~~~~~~~~~~~g~~~~~~~ 180 (214)
T 1yzh_A 159 ---------------RGLFEYSLVSFSQYGMKLNGVW 180 (214)
T ss_dssp ---------------HHHHHHHHHHHHHHTCEEEEEE
T ss_pred ---------------HHHHHHHHHHHHHCCCeeeecc
Confidence 0113678888888999988754
|
| >1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* | Back alignment and structure |
|---|
Probab=99.31 E-value=3.3e-11 Score=117.80 Aligned_cols=155 Identities=13% Similarity=0.053 Sum_probs=103.6
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
....|.+.++. .+..+|||+|||+|.++..|+++ +..++|+|+ ..|+..++-.+...
T Consensus 178 ~~~~l~~~~~~---~~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~----------------- 236 (359)
T 1x19_A 178 AIQLLLEEAKL---DGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEK----------------- 236 (359)
T ss_dssp HHHHHHHHCCC---TTCCEEEEESCTTCHHHHHHHHHCTTCEEEEEEC-GGGHHHHHHHHHHT-----------------
T ss_pred hHHHHHHhcCC---CCCCEEEEECCcccHHHHHHHHHCCCCeEEEEec-HHHHHHHHHHHHhc-----------------
Confidence 44455555542 25679999999999999999998 679999999 99998766322100
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCCh--hhHHHHHHHHHHhccCCcE
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGV 329 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta--~Ni~~yi~~I~~~LKPGG~ 329 (397)
....++.+..+|+.+. .. ..+|+|+..+.+... ++....++.++++|||||+
T Consensus 237 ---------------------~~~~~v~~~~~d~~~~-~~----~~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~pgG~ 290 (359)
T 1x19_A 237 ---------------------GVADRMRGIAVDIYKE-SY----PEADAVLFCRILYSANEQLSTIMCKKAFDAMRSGGR 290 (359)
T ss_dssp ---------------------TCTTTEEEEECCTTTS-CC----CCCSEEEEESCGGGSCHHHHHHHHHHHHTTCCTTCE
T ss_pred ---------------------CCCCCEEEEeCccccC-CC----CCCCEEEEechhccCCHHHHHHHHHHHHHhcCCCCE
Confidence 0112378899999875 21 223999988765433 3478999999999999999
Q ss_pred EEEecCCcc-----hhh---hc---cCCCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 330 WINLGPLLY-----HFA---DL---YGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 330 wIN~GPLlY-----h~~---d~---~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
+|-+.+..- .+. .. .+...+....++.+|++++++++||++++...
T Consensus 291 l~i~e~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~t~~e~~~ll~~aGf~~v~~~~ 347 (359)
T 1x19_A 291 LLILDMVIDDPENPNFDYLSHYILGAGMPFSVLGFKEQARYKEILESLGYKDVTMVR 347 (359)
T ss_dssp EEEEEECCCCTTSCCHHHHHHHGGGGGSSCCCCCCCCGGGHHHHHHHHTCEEEEEEE
T ss_pred EEEEecccCCCCCchHHHHHHHHHhcCCCCcccCCCCHHHHHHHHHHCCCceEEEEe
Confidence 964221100 000 00 01000001128999999999999999988653
|
| >3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=99.31 E-value=1.7e-11 Score=113.03 Aligned_cols=102 Identities=15% Similarity=0.164 Sum_probs=77.6
Q ss_pred CCCeEEEecCCCChhHHHHHH--cCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISH--LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~--~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|..+..||+ .+..|+|+|+|..|+..|+..+...
T Consensus 71 ~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~-------------------------------- 118 (232)
T 3ntv_A 71 NVKNILEIGTAIGYSSMQFASISDDIHVTTIERNETMIQYAKQNLATY-------------------------------- 118 (232)
T ss_dssp TCCEEEEECCSSSHHHHHHHTTCTTCEEEEEECCHHHHHHHHHHHHHT--------------------------------
T ss_pred CCCEEEEEeCchhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--------------------------------
Confidence 456999999999999999999 5789999999999998877433210
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
....++.++.+|+.+... +...++||+|+.... ..+...+++.+.++|||||++|-
T Consensus 119 ------~~~~~v~~~~~d~~~~~~-~~~~~~fD~V~~~~~---~~~~~~~l~~~~~~LkpgG~lv~ 174 (232)
T 3ntv_A 119 ------HFENQVRIIEGNALEQFE-NVNDKVYDMIFIDAA---KAQSKKFFEIYTPLLKHQGLVIT 174 (232)
T ss_dssp ------TCTTTEEEEESCGGGCHH-HHTTSCEEEEEEETT---SSSHHHHHHHHGGGEEEEEEEEE
T ss_pred ------CCCCcEEEEECCHHHHHH-hhccCCccEEEEcCc---HHHHHHHHHHHHHhcCCCeEEEE
Confidence 011247889999987532 012478999985432 34577899999999999999985
|
| >3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ... | Back alignment and structure |
|---|
Probab=99.30 E-value=2.3e-11 Score=110.74 Aligned_cols=141 Identities=20% Similarity=0.240 Sum_probs=93.1
Q ss_pred chhhHHHHHHHHHHhc--ccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEE
Q 015966 143 ADVDKVRCIIRNIVRD--WAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGN 217 (397)
Q Consensus 143 ~d~dkv~stL~q~~RD--WS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~Gn 217 (397)
.|-+.+...+.++.+. |...-..+. ..++..+.... ++.+|||+|||+|.++..||+. |..|+|+
T Consensus 20 ~~~~~v~~~~~~~~~~~~~~~~~~~~~----~~~l~~l~~~~------~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~v 89 (221)
T 3u81_A 20 GDPQSVLEAIDTYCTQKEWAMNVGDAK----GQIMDAVIREY------SPSLVLELGAYCGYSAVRMARLLQPGARLLTM 89 (221)
T ss_dssp TCHHHHHHHHHHHHHHHTCGGGCCHHH----HHHHHHHHHHH------CCSEEEEECCTTSHHHHHHHTTSCTTCEEEEE
T ss_pred CCHHHHHHHHHHHhhhcCcCcccCHHH----HHHHHHHHHhc------CCCEEEEECCCCCHHHHHHHHhCCCCCEEEEE
Confidence 4556777788888764 432222222 12444444432 4569999999999999999984 7899999
Q ss_pred eCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCC-C--CC
Q 015966 218 EFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD-P--SQ 294 (397)
Q Consensus 218 D~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~-~--~~ 294 (397)
|+|..|+..|+-.+... ....++.++.||+.++... + ..
T Consensus 90 D~~~~~~~~a~~~~~~~--------------------------------------~~~~~v~~~~~d~~~~l~~~~~~~~ 131 (221)
T 3u81_A 90 EINPDCAAITQQMLNFA--------------------------------------GLQDKVTILNGASQDLIPQLKKKYD 131 (221)
T ss_dssp ESCHHHHHHHHHHHHHH--------------------------------------TCGGGEEEEESCHHHHGGGTTTTSC
T ss_pred eCChHHHHHHHHHHHHc--------------------------------------CCCCceEEEECCHHHHHHHHHHhcC
Confidence 99999998877332211 0112378899998764221 0 01
Q ss_pred CCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 295 VGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 295 ~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
.++||+|+.........+..++++.+ ++|||||++|-
T Consensus 132 ~~~fD~V~~d~~~~~~~~~~~~~~~~-~~LkpgG~lv~ 168 (221)
T 3u81_A 132 VDTLDMVFLDHWKDRYLPDTLLLEKC-GLLRKGTVLLA 168 (221)
T ss_dssp CCCCSEEEECSCGGGHHHHHHHHHHT-TCCCTTCEEEE
T ss_pred CCceEEEEEcCCcccchHHHHHHHhc-cccCCCeEEEE
Confidence 26899997654333334455677777 99999999994
|
| >2b3t_A Protein methyltransferase HEMK; translation termination, methylation, conformational changes; HET: SAH; 3.10A {Escherichia coli} SCOP: c.66.1.30 PDB: 1t43_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=3e-11 Score=114.00 Aligned_cols=136 Identities=20% Similarity=0.205 Sum_probs=98.9
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccccc
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~S 250 (397)
.+++.+.+.++ .++.+|||+|||+|.++..||+. +..|+|+|+|..|+..++......
T Consensus 97 ~l~~~~l~~~~----~~~~~vLDlG~GsG~~~~~la~~~~~~~v~~vD~s~~~l~~a~~n~~~~---------------- 156 (276)
T 2b3t_A 97 CLVEQALARLP----EQPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHL---------------- 156 (276)
T ss_dssp HHHHHHHHHSC----SSCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHH----------------
T ss_pred HHHHHHHHhcc----cCCCEEEEecCCccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc----------------
Confidence 36666666654 24679999999999999999976 789999999999998877322100
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-ccCCh-------------------
Q 015966 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA------------------- 310 (397)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta------------------- 310 (397)
.+ .++.++.+|+.+... .++||+|++.. |+...
T Consensus 157 ------------~~-----------~~v~~~~~d~~~~~~----~~~fD~Iv~npPy~~~~~~~l~~~v~~~~p~~al~~ 209 (276)
T 2b3t_A 157 ------------AI-----------KNIHILQSDWFSALA----GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVA 209 (276)
T ss_dssp ------------TC-----------CSEEEECCSTTGGGT----TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBC
T ss_pred ------------CC-----------CceEEEEcchhhhcc----cCCccEEEECCCCCCccccccChhhhhcCcHHHHcC
Confidence 00 126788899877532 46899999873 33221
Q ss_pred -----hhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 311 -----HNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 311 -----~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
..+...++.+.++|||||+++-.-+ ..+.+++++++++.||+.++
T Consensus 210 ~~~g~~~~~~~l~~~~~~LkpgG~l~~~~~-----------------~~~~~~~~~~l~~~Gf~~v~ 259 (276)
T 2b3t_A 210 ADSGMADIVHIIEQSRNALVSGGFLLLEHG-----------------WQQGEAVRQAFILAGYHDVE 259 (276)
T ss_dssp HHHHTHHHHHHHHHHGGGEEEEEEEEEECC-----------------SSCHHHHHHHHHHTTCTTCC
T ss_pred CCcHHHHHHHHHHHHHHhcCCCCEEEEEEC-----------------chHHHHHHHHHHHCCCcEEE
Confidence 3467789999999999999984210 13578999999999997654
|
| >3dmg_A Probable ribosomal RNA small subunit methyltransf; monomethyltranserase, 16S rRNA methyltransferase, N2 G1207 methyltransferase; HET: SAH; 1.55A {Thermus thermophilus} PDB: 3dmf_A* 3dmh_A* 2zul_A* 2zwv_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=5.1e-12 Score=126.85 Aligned_cols=118 Identities=19% Similarity=0.223 Sum_probs=86.1
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
.+++.|.+..... ..++.+|||+|||+|.++..++++|..|+|+|+|..|+..++..+.. +
T Consensus 218 ~ll~~l~~~l~~~-~~~~~~VLDlGcG~G~~~~~la~~g~~V~gvDis~~al~~A~~n~~~----~-------------- 278 (381)
T 3dmg_A 218 LLLEALQERLGPE-GVRGRQVLDLGAGYGALTLPLARMGAEVVGVEDDLASVLSLQKGLEA----N-------------- 278 (381)
T ss_dssp HHHHHHHHHHCTT-TTTTCEEEEETCTTSTTHHHHHHTTCEEEEEESBHHHHHHHHHHHHH----T--------------
T ss_pred HHHHHHHHhhccc-CCCCCEEEEEeeeCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHH----c--------------
Confidence 3566665543211 12567999999999999999999999999999999999877632210 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee--cc---CChhhHHHHHHHHHHhccCC
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF--FI---DTAHNIVEYIEIISRILKDG 327 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F--FI---Dta~Ni~~yi~~I~~~LKPG 327 (397)
. -.+.++.+|+.+... ..++||+|++.. .. .+..+...+|+.+.++||||
T Consensus 279 --------~--------------~~v~~~~~D~~~~~~---~~~~fD~Ii~npp~~~~~~~~~~~~~~~l~~~~~~LkpG 333 (381)
T 3dmg_A 279 --------A--------------LKAQALHSDVDEALT---EEARFDIIVTNPPFHVGGAVILDVAQAFVNVAAARLRPG 333 (381)
T ss_dssp --------T--------------CCCEEEECSTTTTSC---TTCCEEEEEECCCCCTTCSSCCHHHHHHHHHHHHHEEEE
T ss_pred --------C--------------CCeEEEEcchhhccc---cCCCeEEEEECCchhhcccccHHHHHHHHHHHHHhcCcC
Confidence 0 015678899877532 247999999873 22 22456789999999999999
Q ss_pred cEEEEec
Q 015966 328 GVWINLG 334 (397)
Q Consensus 328 G~wIN~G 334 (397)
|+++-+.
T Consensus 334 G~l~iv~ 340 (381)
T 3dmg_A 334 GVFFLVS 340 (381)
T ss_dssp EEEEEEE
T ss_pred cEEEEEE
Confidence 9999643
|
| >4df3_A Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; NADP rossmann superfamily, S-adenosyl-L-M (SAM) binding, nucleolus; HET: SAM; 1.73A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=99.29 E-value=2.2e-11 Score=115.33 Aligned_cols=163 Identities=17% Similarity=0.092 Sum_probs=102.2
Q ss_pred HHhcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CC--eEEEEeCCHHHHHHHHhhh
Q 015966 155 IVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GF--ISQGNEFSYYMMICSSFIL 231 (397)
Q Consensus 155 ~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf--~V~GnD~S~~ML~~s~fiL 231 (397)
-+|.|... |. .+-..|.+-+.....+++.+|||+|||+|.++..||+. |- .|+|+|+|..|+..++-.
T Consensus 51 e~r~w~p~----rs----klaa~i~~gl~~l~ikpG~~VldlG~G~G~~~~~la~~VG~~G~V~avD~s~~~~~~l~~~- 121 (233)
T 4df3_A 51 EYREWNAY----RS----KLAAALLKGLIELPVKEGDRILYLGIASGTTASHMSDIIGPRGRIYGVEFAPRVMRDLLTV- 121 (233)
T ss_dssp EEEECCTT----TC----HHHHHHHTTCSCCCCCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEECCHHHHHHHHHH-
T ss_pred eeeeECCC----ch----HHHHHHHhchhhcCCCCCCEEEEecCcCCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh-
Confidence 48888843 33 34555555444334458899999999999999999987 54 699999999999755421
Q ss_pred hcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChh
Q 015966 232 NHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH 311 (397)
Q Consensus 232 n~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~ 311 (397)
+.+ ..++..+.+|..+....+...+.+|+|+..+... .
T Consensus 122 --a~~--------------------------------------~~ni~~V~~d~~~p~~~~~~~~~vDvVf~d~~~~--~ 159 (233)
T 4df3_A 122 --VRD--------------------------------------RRNIFPILGDARFPEKYRHLVEGVDGLYADVAQP--E 159 (233)
T ss_dssp --STT--------------------------------------CTTEEEEESCTTCGGGGTTTCCCEEEEEECCCCT--T
T ss_pred --hHh--------------------------------------hcCeeEEEEeccCccccccccceEEEEEEeccCC--h
Confidence 111 0124455566554322233457899987654322 3
Q ss_pred hHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 312 NIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 312 Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
+....++.+++.|||||.++-. +.+--.+.. .++ .-...+..+.|++.||++++...
T Consensus 160 ~~~~~l~~~~r~LKpGG~lvI~--ik~r~~d~~-~p~----~~~~~~ev~~L~~~GF~l~e~i~ 216 (233)
T 4df3_A 160 QAAIVVRNARFFLRDGGYMLMA--IKARSIDVT-TEP----SEVYKREIKTLMDGGLEIKDVVH 216 (233)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEE--EECCHHHHH-TCC----CHHHHHHHHHHHHTTCCEEEEEE
T ss_pred hHHHHHHHHHHhccCCCEEEEE--EecccCCCC-CCh----HHHHHHHHHHHHHCCCEEEEEEc
Confidence 4567899999999999999842 011111111 111 11123445567788999987543
|
| >3gdh_A Trimethylguanosine synthase homolog; M7G, CAP, dimethyltransferase, usnRNA, snoRNA, telomerase, cytoplasm, methyltransferase, nucleus; HET: MGP SAH; 2.00A {Homo sapiens} PDB: 3egi_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.1e-12 Score=120.11 Aligned_cols=136 Identities=12% Similarity=-0.012 Sum_probs=93.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|.++..||++|..|+|+|+|..|+..++..+... .
T Consensus 78 ~~~~vLD~gcG~G~~~~~la~~~~~v~~vD~s~~~~~~a~~~~~~~--------------------------~------- 124 (241)
T 3gdh_A 78 KCDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVY--------------------------G------- 124 (241)
T ss_dssp CCSEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--------------------------T-------
T ss_pred CCCEEEECccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHc--------------------------C-------
Confidence 4679999999999999999999999999999999998776332110 0
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCCC
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQED 348 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~ 348 (397)
...++.++.+|+.++.. .++||+|++..-+....+....+..++++|||||++|-- ++.. .....
T Consensus 125 -----~~~~~~~~~~d~~~~~~----~~~~D~v~~~~~~~~~~~~~~~~~~~~~~L~pgG~~i~~-----~~~~-~~~~~ 189 (241)
T 3gdh_A 125 -----IADKIEFICGDFLLLAS----FLKADVVFLSPPWGGPDYATAETFDIRTMMSPDGFEIFR-----LSKK-ITNNI 189 (241)
T ss_dssp -----CGGGEEEEESCHHHHGG----GCCCSEEEECCCCSSGGGGGSSSBCTTTSCSSCHHHHHH-----HHHH-HCSCE
T ss_pred -----CCcCeEEEECChHHhcc----cCCCCEEEECCCcCCcchhhhHHHHHHhhcCCcceeHHH-----HHHh-hCCce
Confidence 01237889999988642 478999998653333333334677889999999997620 0000 00000
Q ss_pred --CccccCCHHHHHHHHHhCCCEEEE
Q 015966 349 --EMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 349 --~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
...-.++.+++..++...|.-.+.
T Consensus 190 ~~~lp~~~~~~~~~~~l~~~g~~~i~ 215 (241)
T 3gdh_A 190 VYFLPRNADIDQVASLAGPGGQVEIE 215 (241)
T ss_dssp EEEEETTBCHHHHHHTTCTTCCEEEE
T ss_pred EEECCCCCCHHHHHHHhccCCCEEEE
Confidence 012246889999999877654443
|
| >1yb2_A Hypothetical protein TA0852; structural genomics, methyltransferase, thermoplasma acidoph midwest center for structural genomics, MCSG; 2.01A {Thermoplasma acidophilum} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.29 E-value=9.6e-12 Score=117.52 Aligned_cols=123 Identities=15% Similarity=0.039 Sum_probs=91.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|.++..|++. +..|+|+|+|..|+..++-.+... . +
T Consensus 110 ~~~~VLD~G~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------------------------~-g---- 160 (275)
T 1yb2_A 110 PGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEF------------------------Y-D---- 160 (275)
T ss_dssp TTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTT------------------------S-C----
T ss_pred CcCEEEEecCCCCHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhc------------------------C-C----
Confidence 5679999999999999999998 789999999999998776322100 0 0
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccC
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g 345 (397)
..++.+..+|+.+.. ..++||+|++ + .++..++++.+.++|||||+++-..|..
T Consensus 161 ---------~~~v~~~~~d~~~~~----~~~~fD~Vi~----~-~~~~~~~l~~~~~~LkpgG~l~i~~~~~-------- 214 (275)
T 1yb2_A 161 ---------IGNVRTSRSDIADFI----SDQMYDAVIA----D-IPDPWNHVQKIASMMKPGSVATFYLPNF-------- 214 (275)
T ss_dssp ---------CTTEEEECSCTTTCC----CSCCEEEEEE----C-CSCGGGSHHHHHHTEEEEEEEEEEESSH--------
T ss_pred ---------CCcEEEEECchhccC----cCCCccEEEE----c-CcCHHHHHHHHHHHcCCCCEEEEEeCCH--------
Confidence 013678889987732 2478999987 2 2344588999999999999999643321
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 346 QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 346 ~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
-..+++.+.+++.||+.++..
T Consensus 215 --------~~~~~~~~~l~~~Gf~~~~~~ 235 (275)
T 1yb2_A 215 --------DQSEKTVLSLSASGMHHLETV 235 (275)
T ss_dssp --------HHHHHHHHHSGGGTEEEEEEE
T ss_pred --------HHHHHHHHHHHHCCCeEEEEE
Confidence 135678888889999988743
|
| >1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=4.8e-11 Score=116.52 Aligned_cols=144 Identities=18% Similarity=0.181 Sum_probs=97.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
+..+|||+|||+|.++..|+++ +..++|+|+ ..|+..++-.+...
T Consensus 182 ~~~~vlDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~-------------------------------- 228 (374)
T 1qzz_A 182 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADA-------------------------------- 228 (374)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT--------------------------------
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCEEEEEeC-HHHHHHHHHHHHhc--------------------------------
Confidence 5679999999999999999998 578999999 99998776322100
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCC--hhhHHHHHHHHHHhccCCcEEEEecC--Ccc----
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNIVEYIEIISRILKDGGVWINLGP--LLY---- 338 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDt--a~Ni~~yi~~I~~~LKPGG~wIN~GP--LlY---- 338 (397)
....++.+..+|+.+.. | ..||+|++...+.. .......++.++++|||||++|-.-+ .+-
T Consensus 229 ------~~~~~v~~~~~d~~~~~--~---~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~ 297 (374)
T 1qzz_A 229 ------GLADRVTVAEGDFFKPL--P---VTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGAD 297 (374)
T ss_dssp ------TCTTTEEEEECCTTSCC--S---CCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------
T ss_pred ------CCCCceEEEeCCCCCcC--C---CCCCEEEEeccccCCCHHHHHHHHHHHHHhcCCCcEEEEEechhhcCCCCC
Confidence 01124788999987622 2 34999998765432 23346899999999999998874322 210
Q ss_pred -hhhhccCC---CCCccccCCHHHHHHHHHhCCCEEEEEeec
Q 015966 339 -HFADLYGQ---EDEMSIELSLEDVKRVALHYGFEFEKEKTI 376 (397)
Q Consensus 339 -h~~d~~g~---~~~~~ieLS~EEl~~ll~~~GFeii~e~~i 376 (397)
.+....+. ......+++.++++++++++||++++....
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~aGf~~~~~~~~ 339 (374)
T 1qzz_A 298 RFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERTS 339 (374)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEEEEE
T ss_pred cchhhhcchHHHHhCCCcCCCHHHHHHHHHHCCCceEEEEEC
Confidence 00000000 000023579999999999999999886543
|
| >2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.29 E-value=9e-12 Score=112.68 Aligned_cols=104 Identities=15% Similarity=0.049 Sum_probs=75.0
Q ss_pred CCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 190 PPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
+.+|||+|||+|.++..++.+|. .|+|+|+|..|+..|+..+... .+ .
T Consensus 54 ~~~vLDlGcGtG~~~~~~~~~~~~~v~gvD~s~~~l~~a~~~~~~~--------------------------~~-----~ 102 (201)
T 2ift_A 54 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTL--------------------------KC-----S 102 (201)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHT--------------------------TC-----C
T ss_pred CCeEEEcCCccCHHHHHHHHccCCEEEEEECCHHHHHHHHHHHHHh--------------------------CC-----C
Confidence 46899999999999999888886 8999999999998877322110 00 0
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCC-ccEEEEeeccCChhhHHHHHHHH--HHhccCCcEEEE
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGA-WDAVVTCFFIDTAHNIVEYIEII--SRILKDGGVWIN 332 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~-fD~VvT~FFIDta~Ni~~yi~~I--~~~LKPGG~wIN 332 (397)
..++.++.+|+.++... ...++ ||+|++..-.. ..+..+.++.+ .++|||||+++-
T Consensus 103 ------~~~v~~~~~d~~~~~~~-~~~~~~fD~I~~~~~~~-~~~~~~~l~~~~~~~~LkpgG~l~i 161 (201)
T 2ift_A 103 ------SEQAEVINQSSLDFLKQ-PQNQPHFDVVFLDPPFH-FNLAEQAISLLCENNWLKPNALIYV 161 (201)
T ss_dssp ------TTTEEEECSCHHHHTTS-CCSSCCEEEEEECCCSS-SCHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred ------ccceEEEECCHHHHHHh-hccCCCCCEEEECCCCC-CccHHHHHHHHHhcCccCCCcEEEE
Confidence 02377899998875321 12467 99999763222 24566788888 668999999984
|
| >2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.28 E-value=9.6e-12 Score=114.35 Aligned_cols=138 Identities=17% Similarity=0.167 Sum_probs=98.0
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCcccccccc
Q 015966 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWI 246 (397)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi 246 (397)
.|+..+..+.+.+.. .++.+|||+|||+|.++..||++ +..|+|+|+|..|+..++-.+... +
T Consensus 80 ~~~~~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~~D~~~~~~~~a~~~~~~~-----~------ 145 (258)
T 2pwy_A 80 TYPKDASAMVTLLDL---APGMRVLEAGTGSGGLTLFLARAVGEKGLVESYEARPHHLAQAERNVRAF-----W------ 145 (258)
T ss_dssp CCHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH-----C------
T ss_pred ccchHHHHHHHHcCC---CCCCEEEEECCCcCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHh-----c------
Confidence 344455555555532 26779999999999999999998 689999999999998776332100 0
Q ss_pred ccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccC
Q 015966 247 HSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKD 326 (397)
Q Consensus 247 ~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKP 326 (397)
+ ..++.+..+|+.+.. ...+.||+|+... ++...+++.+.++|||
T Consensus 146 --------------g-------------~~~v~~~~~d~~~~~---~~~~~~D~v~~~~-----~~~~~~l~~~~~~L~~ 190 (258)
T 2pwy_A 146 --------------Q-------------VENVRFHLGKLEEAE---LEEAAYDGVALDL-----MEPWKVLEKAALALKP 190 (258)
T ss_dssp --------------C-------------CCCEEEEESCGGGCC---CCTTCEEEEEEES-----SCGGGGHHHHHHHEEE
T ss_pred --------------C-------------CCCEEEEECchhhcC---CCCCCcCEEEECC-----cCHHHHHHHHHHhCCC
Confidence 0 012677889988751 1247899998731 2345789999999999
Q ss_pred CcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 327 GGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 327 GG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
||+++-+.|.. -..+++.+.+++.||+.++
T Consensus 191 gG~l~~~~~~~----------------~~~~~~~~~l~~~gf~~~~ 220 (258)
T 2pwy_A 191 DRFLVAYLPNI----------------TQVLELVRAAEAHPFRLER 220 (258)
T ss_dssp EEEEEEEESCH----------------HHHHHHHHHHTTTTEEEEE
T ss_pred CCEEEEEeCCH----------------HHHHHHHHHHHHCCCceEE
Confidence 99999644321 1245777788889999776
|
| >4dzr_A Protein-(glutamine-N5) methyltransferase, release specific; structural genomics, PSI-biology; 2.55A {Alicyclobacillus acidocaldarius subsp} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.4e-12 Score=112.27 Aligned_cols=142 Identities=15% Similarity=0.121 Sum_probs=84.1
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
+++.+.+.++.. .++.+|||+|||+|.++..++++ +..|+|+|+|..|+..++..+..
T Consensus 17 ~~~~~~~~l~~~--~~~~~vLDiG~G~G~~~~~l~~~~~~~~v~~vD~~~~~~~~a~~~~~~------------------ 76 (215)
T 4dzr_A 17 LVEEAIRFLKRM--PSGTRVIDVGTGSGCIAVSIALACPGVSVTAVDLSMDALAVARRNAER------------------ 76 (215)
T ss_dssp HHHHHHHHHTTC--CTTEEEEEEESSBCHHHHHHHHHCTTEEEEEEECC-------------------------------
T ss_pred HHHHHHHHhhhc--CCCCEEEEecCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHH------------------
Confidence 444444444321 25779999999999999999999 56999999999998765511100
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCC-CCCCCCccEEEEee-ccCC--------------------
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTCF-FIDT-------------------- 309 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~-~~~~~~fD~VvT~F-FIDt-------------------- 309 (397)
. . .++.++.+|+.+.... ....++||+|++.. |...
T Consensus 77 -----~---~--------------~~~~~~~~d~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~ 134 (215)
T 4dzr_A 77 -----F---G--------------AVVDWAAADGIEWLIERAERGRPWHAIVSNPPYIPTGEIDQLEPSVRDYEPRLALD 134 (215)
T ss_dssp ----------------------------CCHHHHHHHHHHHHHTTCCBSEEEECCCCCC---------------------
T ss_pred -----h---C--------------CceEEEEcchHhhhhhhhhccCcccEEEECCCCCCCccccccChhhhccCcccccc
Confidence 0 0 0256788888773320 00127899999852 1110
Q ss_pred -----hhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHH--hCCCEEEEE
Q 015966 310 -----AHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVAL--HYGFEFEKE 373 (397)
Q Consensus 310 -----a~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~--~~GFeii~e 373 (397)
...+..+++.++++|||||+++-+. . -.-..+++.++++ +.||..++.
T Consensus 135 ~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~---~-------------~~~~~~~~~~~l~~~~~gf~~~~~ 189 (215)
T 4dzr_A 135 GGEDGLQFYRRMAALPPYVLARGRAGVFLE---V-------------GHNQADEVARLFAPWRERGFRVRK 189 (215)
T ss_dssp ---CTTHHHHHHHTCCGGGBCSSSEEEEEE---C-------------TTSCHHHHHHHTGGGGGGTEECCE
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCCeEEEEE---E-------------CCccHHHHHHHHHHhhcCCceEEE
Confidence 1112678899999999999944211 0 0134678899999 899976653
|
| >2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=99.28 E-value=4.7e-11 Score=115.05 Aligned_cols=153 Identities=14% Similarity=0.069 Sum_probs=103.2
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 175 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 175 l~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
...+.+.++- .+ .+|||+|||+|.++..|+++ +..++|+|+ ..|+..++-.+...
T Consensus 157 ~~~~~~~~~~---~~-~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~------------------ 213 (334)
T 2ip2_A 157 FHEIPRLLDF---RG-RSFVDVGGGSGELTKAILQAEPSARGVMLDR-EGSLGVARDNLSSL------------------ 213 (334)
T ss_dssp HHHHHHHSCC---TT-CEEEEETCTTCHHHHHHHHHCTTCEEEEEEC-TTCTHHHHHHTHHH------------------
T ss_pred HHHHHHhCCC---CC-CEEEEeCCCchHHHHHHHHHCCCCEEEEeCc-HHHHHHHHHHHhhc------------------
Confidence 3444455542 13 79999999999999999988 678999999 99987765221100
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCCcEE
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVW 330 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPGG~w 330 (397)
....++.++.+||.+. . .+.||+|+....+. ..+.....++.++++|||||++
T Consensus 214 --------------------~~~~~v~~~~~d~~~~--~---~~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l 268 (334)
T 2ip2_A 214 --------------------LAGERVSLVGGDMLQE--V---PSNGDIYLLSRIIGDLDEAASLRLLGNCREAMAGDGRV 268 (334)
T ss_dssp --------------------HHTTSEEEEESCTTTC--C---CSSCSEEEEESCGGGCCHHHHHHHHHHHHHHSCTTCEE
T ss_pred --------------------CCCCcEEEecCCCCCC--C---CCCCCEEEEchhccCCCHHHHHHHHHHHHHhcCCCCEE
Confidence 0012378899998772 2 25799999876553 3445679999999999999998
Q ss_pred EEecCCc-------ch-hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 331 INLGPLL-------YH-FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 331 IN~GPLl-------Yh-~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
|-..+.. +. +-+..-.......+.+.+|++++++++||++++...
T Consensus 269 ~i~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 321 (334)
T 2ip2_A 269 VVIERTISASEPSPMSVLWDVHLFMACAGRHRTTEEVVDLLGRGGFAVERIVD 321 (334)
T ss_dssp EEEECCBCSSSCCHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred EEEEeccCCCCCcchhHHhhhHhHhhCCCcCCCHHHHHHHHHHCCCceeEEEE
Confidence 8532211 00 000000000002357999999999999999988653
|
| >3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.28 E-value=2.8e-11 Score=112.99 Aligned_cols=103 Identities=14% Similarity=0.058 Sum_probs=78.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|..+..||+. +..|+|+|+|..|+..|+-.+...
T Consensus 63 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------------------------------- 111 (248)
T 3tfw_A 63 QAKRILEIGTLGGYSTIWMARELPADGQLLTLEADAHHAQVARENLQLA------------------------------- 111 (248)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTSCTTCEEEEEECCHHHHHHHHHHHHHT-------------------------------
T ss_pred CCCEEEEecCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-------------------------------
Confidence 4579999999999999999998 889999999999998776332210
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
....++.++.||+.+........++||+|+... ...+...|++.+.++|||||++|-
T Consensus 112 -------g~~~~v~~~~~d~~~~l~~~~~~~~fD~V~~d~---~~~~~~~~l~~~~~~LkpGG~lv~ 168 (248)
T 3tfw_A 112 -------GVDQRVTLREGPALQSLESLGECPAFDLIFIDA---DKPNNPHYLRWALRYSRPGTLIIG 168 (248)
T ss_dssp -------TCTTTEEEEESCHHHHHHTCCSCCCCSEEEECS---CGGGHHHHHHHHHHTCCTTCEEEE
T ss_pred -------CCCCcEEEEEcCHHHHHHhcCCCCCeEEEEECC---chHHHHHHHHHHHHhcCCCeEEEE
Confidence 111247889999877432111235899997633 345677899999999999999985
|
| >2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.27 E-value=8.9e-12 Score=108.71 Aligned_cols=103 Identities=18% Similarity=0.082 Sum_probs=74.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|.++..++++|. .|+|+|+|..|+..++..+...
T Consensus 31 ~~~~vLDlGcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------------------------------- 77 (177)
T 2esr_A 31 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMT--------------------------------- 77 (177)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTT---------------------------------
T ss_pred CCCeEEEeCCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHc---------------------------------
Confidence 567999999999999999999975 8999999999998776322100
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHH--HhccCCcEEEE
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIIS--RILKDGGVWIN 332 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~--~~LKPGG~wIN 332 (397)
....++.++.+|+.+... ...+.||+|++..-.. .....+.++.+. ++|||||+++-
T Consensus 78 -----~~~~~~~~~~~d~~~~~~--~~~~~fD~i~~~~~~~-~~~~~~~~~~l~~~~~L~~gG~l~~ 136 (177)
T 2esr_A 78 -----KAENRFTLLKMEAERAID--CLTGRFDLVFLDPPYA-KETIVATIEALAAKNLLSEQVMVVC 136 (177)
T ss_dssp -----TCGGGEEEECSCHHHHHH--HBCSCEEEEEECCSSH-HHHHHHHHHHHHHTTCEEEEEEEEE
T ss_pred -----CCCCceEEEECcHHHhHH--hhcCCCCEEEECCCCC-cchHHHHHHHHHhCCCcCCCcEEEE
Confidence 011236788899877422 1236799998752110 134556777776 99999999984
|
| >3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=6.9e-11 Score=114.16 Aligned_cols=144 Identities=15% Similarity=0.115 Sum_probs=98.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
+..+|||+|||+|.++..|+++ +..++++|+ +.|+..++-.+...
T Consensus 169 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~~~~~~~-------------------------------- 215 (332)
T 3i53_A 169 ALGHVVDVGGGSGGLLSALLTAHEDLSGTVLDL-QGPASAAHRRFLDT-------------------------------- 215 (332)
T ss_dssp GGSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT--------------------------------
T ss_pred CCCEEEEeCCChhHHHHHHHHHCCCCeEEEecC-HHHHHHHHHhhhhc--------------------------------
Confidence 4679999999999999999986 568999999 99998766322100
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCCcEEEEecCCcch-----
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYH----- 339 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh----- 339 (397)
....++.+..+||.+-. | ..||+|++...+. ..+...+.++.++++|||||+++-.-+..-.
T Consensus 216 ------~~~~~v~~~~~d~~~~~--p---~~~D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~ 284 (332)
T 3i53_A 216 ------GLSGRAQVVVGSFFDPL--P---AGAGGYVLSAVLHDWDDLSAVAILRRCAEAAGSGGVVLVIEAVAGDEHAGT 284 (332)
T ss_dssp ------TCTTTEEEEECCTTSCC--C---CSCSEEEEESCGGGSCHHHHHHHHHHHHHHHTTTCEEEEEECCCC---CCH
T ss_pred ------CcCcCeEEecCCCCCCC--C---CCCcEEEEehhhccCCHHHHHHHHHHHHHhcCCCCEEEEEeecCCCCCccH
Confidence 11234889999997422 2 3799999876543 2233689999999999999999853221100
Q ss_pred hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeec
Q 015966 340 FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTI 376 (397)
Q Consensus 340 ~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i 376 (397)
..+..-.......+.|.+|++++++++||++++....
T Consensus 285 ~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~~ 321 (332)
T 3i53_A 285 GMDLRMLTYFGGKERSLAELGELAAQAGLAVRAAHPI 321 (332)
T ss_dssp HHHHHHHHHHSCCCCCHHHHHHHHHHTTEEEEEEEEC
T ss_pred HHHHHHHhhCCCCCCCHHHHHHHHHHCCCEEEEEEEC
Confidence 0000000000124689999999999999999886543
|
| >3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=3.3e-11 Score=116.67 Aligned_cols=138 Identities=17% Similarity=0.155 Sum_probs=93.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++.++++. +..|+|+|+|..|+..++--+..... ...
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~~~------------------------~~~--- 147 (304)
T 3bwc_A 95 KPERVLIIGGGDGGVLREVLRHGTVEHCDLVDIDGEVMEQSKQHFPQISR------------------------SLA--- 147 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHCHHHHG------------------------GGG---
T ss_pred CCCeEEEEcCCCCHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHhHHhhc------------------------ccC---
Confidence 4579999999999999999988 46899999999999877632210000 000
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCC--hhhH--HHHHHHHHHhccCCcEEEEecCCcchhhh
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNI--VEYIEIISRILKDGGVWINLGPLLYHFAD 342 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDt--a~Ni--~~yi~~I~~~LKPGG~wIN~GPLlYh~~d 342 (397)
..++.++.+|+.++... ...++||+|++..+... ...+ .++++.++++|||||+++...+-.|.
T Consensus 148 --------~~~v~~~~~D~~~~~~~-~~~~~fDvIi~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~~~~~~~~--- 215 (304)
T 3bwc_A 148 --------DPRATVRVGDGLAFVRQ-TPDNTYDVVIIDTTDPAGPASKLFGEAFYKDVLRILKPDGICCNQGESIWL--- 215 (304)
T ss_dssp --------CTTEEEEESCHHHHHHS-SCTTCEEEEEEECC---------CCHHHHHHHHHHEEEEEEEEEEECCTTT---
T ss_pred --------CCcEEEEECcHHHHHHh-ccCCceeEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEEecCCccc---
Confidence 12378899998775321 02578999998654322 1222 58999999999999999963321110
Q ss_pred ccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 343 LYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 343 ~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
-....+++.+.+++.||..++..
T Consensus 216 ---------~~~~~~~~~~~l~~~GF~~v~~~ 238 (304)
T 3bwc_A 216 ---------DLELIEKMSRFIRETGFASVQYA 238 (304)
T ss_dssp ---------CHHHHHHHHHHHHHHTCSEEEEE
T ss_pred ---------chHHHHHHHHHHHhCCCCcEEEE
Confidence 01246788899999999877643
|
| >1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=5.6e-11 Score=115.67 Aligned_cols=143 Identities=19% Similarity=0.170 Sum_probs=97.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
+..+|||+|||+|.++..|++++ ..++++|+ ..|+..++-.+...
T Consensus 183 ~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~~~~~~~-------------------------------- 229 (360)
T 1tw3_A 183 NVRHVLDVGGGKGGFAAAIARRAPHVSATVLEM-AGTVDTARSYLKDE-------------------------------- 229 (360)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-TTHHHHHHHHHHHT--------------------------------
T ss_pred cCcEEEEeCCcCcHHHHHHHHhCCCCEEEEecC-HHHHHHHHHHHHhc--------------------------------
Confidence 56799999999999999999985 57889999 88987766322100
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCCcEEEEecCC-cc-----
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPL-LY----- 338 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPGG~wIN~GPL-lY----- 338 (397)
....++.++.+|+.+.. | ..||+|+....+. ..++..+.++.++++|||||++|-..+. +-
T Consensus 230 ------~~~~~v~~~~~d~~~~~--~---~~~D~v~~~~vl~~~~~~~~~~~l~~~~~~L~pgG~l~i~e~~~~~~~~~~ 298 (360)
T 1tw3_A 230 ------GLSDRVDVVEGDFFEPL--P---RKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRILIHERDDLHENSFN 298 (360)
T ss_dssp ------TCTTTEEEEECCTTSCC--S---SCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEEEEECCBCGGGCCS
T ss_pred ------CCCCceEEEeCCCCCCC--C---CCccEEEEcccccCCCHHHHHHHHHHHHHhcCCCcEEEEEEEeccCCCCCc
Confidence 01124788999987632 2 3499999876543 2334568999999999999988854332 10
Q ss_pred hhhhccCC---CCCccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 339 HFADLYGQ---EDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 339 h~~d~~g~---~~~~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
.+....+. ......+++.+|++++++++||++++...
T Consensus 299 ~~~~~~~~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 338 (360)
T 1tw3_A 299 EQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQ 338 (360)
T ss_dssp HHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred chhhhccHHHhhhcCCcCCCHHHHHHHHHHCCCeEEEEEe
Confidence 00000000 00002357999999999999999988653
|
| >3hp7_A Hemolysin, putative; structural genomics, APC64019, PSI-2, protein STR initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.53A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.1e-11 Score=119.03 Aligned_cols=135 Identities=19% Similarity=0.188 Sum_probs=86.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||||.++..|+++|. .|+|+|+|+.||..+. .+. +. +
T Consensus 85 ~g~~vLDiGcGTG~~t~~L~~~ga~~V~aVDvs~~mL~~a~--r~~---~r-----------------------v----- 131 (291)
T 3hp7_A 85 EDMITIDIGASTGGFTDVMLQNGAKLVYAVDVGTNQLVWKL--RQD---DR-----------------------V----- 131 (291)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEECSSSSCSCHHH--HTC---TT-----------------------E-----
T ss_pred cccEEEecCCCccHHHHHHHhCCCCEEEEEECCHHHHHHHH--HhC---cc-----------------------c-----
Confidence 567999999999999999999997 8999999999986432 000 00 0
Q ss_pred CCCCCCCCCcceeEeccccccc--CCCCCCCCccEEEEee-ccCChhhHHHHHHHHHHhccCCcEEEE-ecCCcchhhh-
Q 015966 268 HPASAGITEGFSMCGGDFVEVY--SDPSQVGAWDAVVTCF-FIDTAHNIVEYIEIISRILKDGGVWIN-LGPLLYHFAD- 342 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely--~~~~~~~~fD~VvT~F-FIDta~Ni~~yi~~I~~~LKPGG~wIN-~GPLlYh~~d- 342 (397)
..+-..++..+. ..+ ...||+|++.. |++ +...|..++++|||||.+|- +.|. |.-..
T Consensus 132 ----------~~~~~~ni~~l~~~~l~--~~~fD~v~~d~sf~s----l~~vL~e~~rvLkpGG~lv~lvkPq-fe~~~~ 194 (291)
T 3hp7_A 132 ----------RSMEQYNFRYAEPVDFT--EGLPSFASIDVSFIS----LNLILPALAKILVDGGQVVALVKPQ-FEAGRE 194 (291)
T ss_dssp ----------EEECSCCGGGCCGGGCT--TCCCSEEEECCSSSC----GGGTHHHHHHHSCTTCEEEEEECGG-GTSCGG
T ss_pred ----------ceecccCceecchhhCC--CCCCCEEEEEeeHhh----HHHHHHHHHHHcCcCCEEEEEECcc-cccChh
Confidence 000011111110 011 24599887643 553 35789999999999999986 3553 21111
Q ss_pred ccC--CC--CCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 343 LYG--QE--DEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 343 ~~g--~~--~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
..+ +. +......+.+++.+++...||++...
T Consensus 195 ~~~~~G~vrd~~~~~~~~~~v~~~~~~~Gf~v~~~ 229 (291)
T 3hp7_A 195 QIGKNGIVRESSIHEKVLETVTAFAVDYGFSVKGL 229 (291)
T ss_dssp GCC-CCCCCCHHHHHHHHHHHHHHHHHTTEEEEEE
T ss_pred hcCCCCccCCHHHHHHHHHHHHHHHHHCCCEEEEE
Confidence 111 01 01123468999999999999998873
|
| >3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.25 E-value=3.4e-11 Score=107.80 Aligned_cols=110 Identities=15% Similarity=0.119 Sum_probs=80.5
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
+.++..+.+.+.. .++.+|||+|||+|.++..||++|..|+|+|+|..|+..++-.+...
T Consensus 63 ~~~~~~~~~~l~~---~~~~~vLdiG~G~G~~~~~la~~~~~v~~vD~~~~~~~~a~~~~~~~----------------- 122 (210)
T 3lbf_A 63 PYMVARMTELLEL---TPQSRVLEIGTGSGYQTAILAHLVQHVCSVERIKGLQWQARRRLKNL----------------- 122 (210)
T ss_dssp HHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHHhcCC---CCCCEEEEEcCCCCHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHc-----------------
Confidence 3455566655542 26789999999999999999999999999999999998776332110
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
. ..++.+..+|+.+... ..++||+|++...+.... +.+.++|||||++|
T Consensus 123 -----------~-----------~~~v~~~~~d~~~~~~---~~~~~D~i~~~~~~~~~~------~~~~~~L~pgG~lv 171 (210)
T 3lbf_A 123 -----------D-----------LHNVSTRHGDGWQGWQ---ARAPFDAIIVTAAPPEIP------TALMTQLDEGGILV 171 (210)
T ss_dssp -----------T-----------CCSEEEEESCGGGCCG---GGCCEEEEEESSBCSSCC------THHHHTEEEEEEEE
T ss_pred -----------C-----------CCceEEEECCcccCCc---cCCCccEEEEccchhhhh------HHHHHhcccCcEEE
Confidence 0 0136788999877432 257899999875443322 25789999999998
Q ss_pred E
Q 015966 332 N 332 (397)
Q Consensus 332 N 332 (397)
-
T Consensus 172 ~ 172 (210)
T 3lbf_A 172 L 172 (210)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >3bzb_A Uncharacterized protein; RED ALGA, protein structure initiat center for eukaryotic structural genomics, CESG, structural genomics; 2.79A {Cyanidioschyzon merolae} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.6e-11 Score=113.26 Aligned_cols=155 Identities=10% Similarity=-0.007 Sum_probs=93.7
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeC-CHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEF-SYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~-S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
++++|.+.... .++.+|||+|||+|.++..+|+.|. .|+|+|+ |..|+..++..... +..
T Consensus 67 l~~~l~~~~~~---~~~~~vLDlG~G~G~~~~~~a~~~~~~v~~~D~s~~~~~~~a~~n~~~----N~~----------- 128 (281)
T 3bzb_A 67 LADTLCWQPEL---IAGKTVCELGAGAGLVSIVAFLAGADQVVATDYPDPEILNSLESNIRE----HTA----------- 128 (281)
T ss_dssp HHHHHHHCGGG---TTTCEEEETTCTTSHHHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHT----TCC-----------
T ss_pred HHHHHHhcchh---cCCCeEEEecccccHHHHHHHHcCCCEEEEEeCCCHHHHHHHHHHHHH----hhh-----------
Confidence 55555554321 1456999999999999999999998 8999999 89999877732210 000
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEe---cccc-cccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhcc--
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCG---GDFV-EVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILK-- 325 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~---GDF~-ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LK-- 325 (397)
... .+..+ ...++.+.. +|.. ++... ...++||+|+....+-...++..+++++.++||
T Consensus 129 ---~~~---~~~~~--------~~~~v~~~~~~~~~~~~~~~~~-~~~~~fD~Ii~~dvl~~~~~~~~ll~~l~~~Lk~~ 193 (281)
T 3bzb_A 129 ---NSC---SSETV--------KRASPKVVPYRWGDSPDSLQRC-TGLQRFQVVLLADLLSFHQAHDALLRSVKMLLALP 193 (281)
T ss_dssp ------------------------CCCEEEECCTTSCTHHHHHH-HSCSSBSEEEEESCCSCGGGHHHHHHHHHHHBCCT
T ss_pred ---hhc---ccccC--------CCCCeEEEEecCCCccHHHHhh-ccCCCCCEEEEeCcccChHHHHHHHHHHHHHhccc
Confidence 000 00000 001244443 3322 12100 014789999986554446678899999999999
Q ss_pred -C--CcEEEE-ecCCcchhhhccCCCCCccccCCHHHHHHHHHhCC-CEEEEE
Q 015966 326 -D--GGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYG-FEFEKE 373 (397)
Q Consensus 326 -P--GG~wIN-~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~G-Feii~e 373 (397)
| ||+++- +.|. . + .+.-..+++.+.+++.| |++++.
T Consensus 194 ~p~~gG~l~v~~~~~----~------~--~~~~~~~~~~~~l~~~G~f~v~~~ 234 (281)
T 3bzb_A 194 ANDPTAVALVTFTHH----R------P--HLAERDLAFFRLVNADGALIAEPW 234 (281)
T ss_dssp TTCTTCEEEEEECC--------------------CTHHHHHHHHSTTEEEEEE
T ss_pred CCCCCCEEEEEEEee----e------c--ccchhHHHHHHHHHhcCCEEEEEe
Confidence 9 997652 2221 0 0 11223467778889999 998875
|
| >2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} | Back alignment and structure |
|---|
Probab=99.25 E-value=5.5e-11 Score=113.53 Aligned_cols=133 Identities=11% Similarity=0.024 Sum_probs=92.2
Q ss_pred CCeEEEecCCC---ChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCcccccc
Q 015966 190 PPACLVPGAGL---GRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (397)
Q Consensus 190 ~~rVLvPGCGl---GRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~i 264 (397)
..+|||+|||+ |.++..+++. |..|+|+|+|+.||..|+-.+..
T Consensus 78 ~~~vLDlGcG~pt~G~~~~~~~~~~p~~~v~~vD~sp~~l~~Ar~~~~~------------------------------- 126 (274)
T 2qe6_A 78 ISQFLDLGSGLPTVQNTHEVAQSVNPDARVVYVDIDPMVLTHGRALLAK------------------------------- 126 (274)
T ss_dssp CCEEEEETCCSCCSSCHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHTT-------------------------------
T ss_pred CCEEEEECCCCCCCChHHHHHHHhCCCCEEEEEECChHHHHHHHHhcCC-------------------------------
Confidence 46999999999 9987766664 78999999999999887733210
Q ss_pred CCCCCCCCCCCCcceeEeccccccc----------CCCCCCCCccEEEEee---ccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 265 PDIHPASAGITEGFSMCGGDFVEVY----------SDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 265 PDv~p~~~~~~~~ls~~~GDF~ely----------~~~~~~~~fD~VvT~F---FIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
..++.++.+|+.+.. ..+ .++||+|+... |++.. .....|++++++|||||+++
T Consensus 127 ----------~~~v~~~~~D~~~~~~~~~~~~~~~~~d--~~~~d~v~~~~vlh~~~d~-~~~~~l~~~~~~L~pGG~l~ 193 (274)
T 2qe6_A 127 ----------DPNTAVFTADVRDPEYILNHPDVRRMID--FSRPAAIMLVGMLHYLSPD-VVDRVVGAYRDALAPGSYLF 193 (274)
T ss_dssp ----------CTTEEEEECCTTCHHHHHHSHHHHHHCC--TTSCCEEEETTTGGGSCTT-THHHHHHHHHHHSCTTCEEE
T ss_pred ----------CCCeEEEEeeCCCchhhhccchhhccCC--CCCCEEEEEechhhhCCcH-HHHHHHHHHHHhCCCCcEEE
Confidence 013678899987531 011 24799998764 45443 47899999999999999998
Q ss_pred E--ecCC---cc-----hhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 332 N--LGPL---LY-----HFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 332 N--~GPL---lY-----h~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
- +.+- .. .|.. .+ .+ ....|.+|+.+++ .||++++
T Consensus 194 i~~~~~~~~~~~~~~~~~~~~-~~-~~--~~~~s~~ei~~~l--~G~~l~~ 238 (274)
T 2qe6_A 194 MTSLVDTGLPAQQKLARITRE-NL-GE--GWARTPEEIERQF--GDFELVE 238 (274)
T ss_dssp EEEEBCSSCHHHHHHHHHHHH-HH-SC--CCCBCHHHHHHTT--TTCEECT
T ss_pred EEEecCcchHHHHHHHHHHHh-cC-CC--CccCCHHHHHHHh--CCCeEcc
Confidence 4 2210 00 0111 01 11 2347999999999 4999886
|
| >1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33 | Back alignment and structure |
|---|
Probab=99.25 E-value=2.1e-11 Score=113.36 Aligned_cols=104 Identities=18% Similarity=0.227 Sum_probs=77.5
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
+.+.+.+.++ .++.+|||+|||+|.++..|+++ |..|+|+|+|..|+..++-..
T Consensus 74 ~~~~~~~~~~----~~~~~vLdiG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~-------------------- 129 (269)
T 1p91_A 74 IVAQLRERLD----DKATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY-------------------- 129 (269)
T ss_dssp HHHHHHHHSC----TTCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC--------------------
T ss_pred HHHHHHHhcC----CCCCEEEEECCCCCHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHhC--------------------
Confidence 4555555543 25679999999999999999998 899999999999997665110
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
.++.+..+|+.++- ..+++||+|++.+-. ..++.+.++|||||+++
T Consensus 130 ------------------------~~~~~~~~d~~~~~---~~~~~fD~v~~~~~~-------~~l~~~~~~L~pgG~l~ 175 (269)
T 1p91_A 130 ------------------------PQVTFCVASSHRLP---FSDTSMDAIIRIYAP-------CKAEELARVVKPGGWVI 175 (269)
T ss_dssp ------------------------TTSEEEECCTTSCS---BCTTCEEEEEEESCC-------CCHHHHHHHEEEEEEEE
T ss_pred ------------------------CCcEEEEcchhhCC---CCCCceeEEEEeCCh-------hhHHHHHHhcCCCcEEE
Confidence 01456778876642 235789999975432 34899999999999999
Q ss_pred EecC
Q 015966 332 NLGP 335 (397)
Q Consensus 332 N~GP 335 (397)
-..|
T Consensus 176 ~~~~ 179 (269)
T 1p91_A 176 TATP 179 (269)
T ss_dssp EEEE
T ss_pred EEEc
Confidence 6544
|
| >3uwp_A Histone-lysine N-methyltransferase, H3 lysine-79; epigenetics, tubercidin, structu genomics, structural genomics consortium, SGC; HET: 5ID; 2.05A {Homo sapiens} PDB: 4eqz_A* 3sx0_A* 4er0_A* 4er7_A* 1nw3_A* 4er6_A* 4er5_A* 3qow_A* 3qox_A* 4ek9_A* 4ekg_A* 4eki_A* 4er3_A* 3sr4_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=3.2e-11 Score=123.45 Aligned_cols=149 Identities=11% Similarity=0.118 Sum_probs=96.3
Q ss_pred hHHHHHHHHHHh-------------cccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C
Q 015966 146 DKVRCIIRNIVR-------------DWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G 211 (397)
Q Consensus 146 dkv~stL~q~~R-------------DWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G 211 (397)
+-++.+|.|.+. .|+++.--| ...+.+..+.+.+.. .++.+|||+|||+|+++..+|.. |
T Consensus 123 ~~~~~Il~~~Y~r~V~~~~~L~~Ye~Fs~~vYGE---t~~~~i~~il~~l~l---~~gd~VLDLGCGtG~l~l~lA~~~g 196 (438)
T 3uwp_A 123 GLLRHILQQVYNHSVTDPEKLNNYEPFSPEVYGE---TSFDLVAQMIDEIKM---TDDDLFVDLGSGVGQVVLQVAAATN 196 (438)
T ss_dssp HHHHHHHHHHHHHHCSCGGGSCCCSSSCGGGGGG---THHHHHHHHHHHHCC---CTTCEEEEESCTTSHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhhcCCCHHHhcCcccCCCcccCC---CCHHHHHHHHHhcCC---CCCCEEEEeCCCCCHHHHHHHHHCC
Confidence 567777777765 244321111 122344444444432 36789999999999999999964 7
Q ss_pred Ce-EEEEeCCHHHHHHHHhhhhccccc-CccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEeccccccc
Q 015966 212 FI-SQGNEFSYYMMICSSFILNHTETA-GEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVY 289 (397)
Q Consensus 212 f~-V~GnD~S~~ML~~s~fiLn~~~~~-~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely 289 (397)
.. |+|+|+|..|+..|+-......+. ..+ ++. ..++.+++|||.++.
T Consensus 197 ~~kVvGIDiS~~~lelAr~n~e~frkr~~~~--------------------Gl~-----------~~rVefi~GD~~~lp 245 (438)
T 3uwp_A 197 CKHHYGVEKADIPAKYAETMDREFRKWMKWY--------------------GKK-----------HAEYTLERGDFLSEE 245 (438)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHHHHHHHHHH--------------------TBC-----------CCEEEEEECCTTSHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHHHHHHHHh--------------------CCC-----------CCCeEEEECcccCCc
Confidence 76 999999999999887433211000 000 000 124889999998853
Q ss_pred CCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe
Q 015966 290 SDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 333 (397)
Q Consensus 290 ~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~ 333 (397)
. +..-..||+|++..++- .+++...|..|+++|||||++|..
T Consensus 246 ~-~d~~~~aDVVf~Nn~~F-~pdl~~aL~Ei~RvLKPGGrIVss 287 (438)
T 3uwp_A 246 W-RERIANTSVIFVNNFAF-GPEVDHQLKERFANMKEGGRIVSS 287 (438)
T ss_dssp H-HHHHHTCSEEEECCTTC-CHHHHHHHHHHHTTSCTTCEEEES
T ss_pred c-ccccCCccEEEEccccc-CchHHHHHHHHHHcCCCCcEEEEe
Confidence 1 10014699998754332 357888999999999999999963
|
| >2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.24 E-value=2.1e-11 Score=106.35 Aligned_cols=103 Identities=19% Similarity=0.093 Sum_probs=73.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|.++..++++|. .|+|+|+|..|+..++..+... .
T Consensus 44 ~~~~vLD~GcG~G~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------------------------~------ 91 (187)
T 2fhp_A 44 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAIT--------------------------K------ 91 (187)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHH--------------------------T------
T ss_pred CCCCEEEeCCccCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHh--------------------------C------
Confidence 456999999999999999999984 8999999999998776332110 0
Q ss_pred CCCCCCCCCcceeEecccccccC-CCCCCCCccEEEEee--ccCChhhHHHHHHHH--HHhccCCcEEEE
Q 015966 268 HPASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTCF--FIDTAHNIVEYIEII--SRILKDGGVWIN 332 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~-~~~~~~~fD~VvT~F--FIDta~Ni~~yi~~I--~~~LKPGG~wIN 332 (397)
...++.++.+|+.+... .+...++||+|++.. .... ..+.++.+ .++|||||+++-
T Consensus 92 ------~~~~~~~~~~d~~~~~~~~~~~~~~fD~i~~~~~~~~~~---~~~~~~~l~~~~~L~~gG~l~~ 152 (187)
T 2fhp_A 92 ------EPEKFEVRKMDANRALEQFYEEKLQFDLVLLDPPYAKQE---IVSQLEKMLERQLLTNEAVIVC 152 (187)
T ss_dssp ------CGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCGGGCC---HHHHHHHHHHTTCEEEEEEEEE
T ss_pred ------CCcceEEEECcHHHHHHHHHhcCCCCCEEEECCCCCchh---HHHHHHHHHHhcccCCCCEEEE
Confidence 01236788999877421 001147899999763 3233 34556666 889999999984
|
| >3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.24 E-value=1.8e-10 Score=126.02 Aligned_cols=149 Identities=13% Similarity=0.134 Sum_probs=100.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|+++..||++| ..|+|+|+|..|+..|+-.++...... .. .
T Consensus 721 ~g~rVLDVGCGTG~lai~LAr~g~p~a~VtGVDIS~emLe~AReRLa~~lnAk-----------------r~-----g-- 776 (950)
T 3htx_A 721 SASTLVDFGCGSGSLLDSLLDYPTSLQTIIGVDISPKGLARAAKMLHVKLNKE-----------------AC-----N-- 776 (950)
T ss_dssp CCSEEEEETCSSSHHHHHHTSSCCCCCEEEEEESCHHHHHHHHHHHHHHTTTT-----------------CS-----S--
T ss_pred CCCEEEEECCCCCHHHHHHHHhCCCCCeEEEEECCHHHHHHHHHHhhhccchh-----------------hc-----C--
Confidence 56799999999999999999998 899999999999998864332110000 00 0
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCCh--hhHHHHHHHHHHhccCCcEEEEecCCc-ch--h
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVWINLGPLL-YH--F 340 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta--~Ni~~yi~~I~~~LKPGG~wIN~GPLl-Yh--~ 340 (397)
..++.+++||+.++. ...+.||+|++...|... +....+++.++++||||+++|. .|.. |. |
T Consensus 777 ---------l~nVefiqGDa~dLp---~~d~sFDlVV~~eVLeHL~dp~l~~~L~eI~RvLKPG~LIIS-TPN~eyN~lF 843 (950)
T 3htx_A 777 ---------VKSATLYDGSILEFD---SRLHDVDIGTCLEVIEHMEEDQACEFGEKVLSLFHPKLLIVS-TPNYEFNTIL 843 (950)
T ss_dssp ---------CSEEEEEESCTTSCC---TTSCSCCEEEEESCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-ECBGGGHHHH
T ss_pred ---------CCceEEEECchHhCC---cccCCeeEEEEeCchhhCChHHHHHHHHHHHHHcCCCEEEEE-ecCchhhhhh
Confidence 124788999998753 245899999987654433 2355799999999999944443 2221 10 1
Q ss_pred hh-----------c--cC--CCCCccccCCHHHHHH----HHHhCCCEEEEEe
Q 015966 341 AD-----------L--YG--QEDEMSIELSLEDVKR----VALHYGFEFEKEK 374 (397)
Q Consensus 341 ~d-----------~--~g--~~~~~~ieLS~EEl~~----ll~~~GFeii~e~ 374 (397)
.. . .+ ..+...++.+.+|++. ++.+.||++.-..
T Consensus 844 ~~Lnp~tr~~dPd~~~~~~fRh~DHrFEWTReEFr~Wae~LAer~GYsVefvG 896 (950)
T 3htx_A 844 QRSTPETQEENNSEPQLPKFRNHDHKFEWTREQFNQWASKLGKRHNYSVEFSG 896 (950)
T ss_dssp TCC------------CCSSCSCSSCSCCBCHHHHHHHHHHHHHHTTEEEEEEE
T ss_pred hhcccccccccccccccccccccCcceeecHHHHHHHHHHHHHhcCcEEEEEc
Confidence 10 0 00 0112356789999988 7788899887654
|
| >1o9g_A RRNA methyltransferase; antibiotic resistance, Se-MAD; 1.5A {Streptomyces viridochromogenes} SCOP: c.66.1.29 PDB: 1o9h_A | Back alignment and structure |
|---|
Probab=99.23 E-value=5.2e-11 Score=110.40 Aligned_cols=136 Identities=13% Similarity=0.020 Sum_probs=77.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCHHHHHHHHhhhhcccccCccc--------cccccccccCCCC--
Q 015966 189 SPPACLVPGAGLGRLALEISHL----GFISQGNEFSYYMMICSSFILNHTETAGEWN--------IYPWIHSNCNSLS-- 254 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~----Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~--------IyPfi~~~Sn~~s-- 254 (397)
++.+|||+|||+|.++..++++ +..|+|+|+|..|+..|+..+...... ... .|-..-..+...+
T Consensus 51 ~~~~vLD~gcGsG~~~~~la~~~~~~~~~v~gvDis~~~l~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (250)
T 1o9g_A 51 GPVTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPA-GLTARELERREQSERFGKPSYLEAAQ 129 (250)
T ss_dssp SCEEEEETTCTTSHHHHHHHHHTGGGEEEEEEEESCHHHHHHHHHHHHTTSHH-HHHHHHHHHHHHHHHHCCHHHHHHHH
T ss_pred CCCeEEECCCCCCHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHHHhhhc-cccccchhhhhhhhhcccccchhhhh
Confidence 4579999999999999999987 678999999999999887433211000 000 0000000000000
Q ss_pred cccCcc-ccccCCCCCCCCCCCCcceeEecccccccCCC--CCCCCccEEEEee-cc--CC------hhhHHHHHHHHHH
Q 015966 255 DSDQLR-PVSIPDIHPASAGITEGFSMCGGDFVEVYSDP--SQVGAWDAVVTCF-FI--DT------AHNIVEYIEIISR 322 (397)
Q Consensus 255 ~~~qlr-~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~--~~~~~fD~VvT~F-FI--Dt------a~Ni~~yi~~I~~ 322 (397)
...+++ ..+..... -...+..+|+.+..... ...++||+|++.. |+ .. ......+++.+++
T Consensus 130 ~~~~v~~~~~~~~~~-------~~~~~~~~D~~~~~~~~~~~~~~~fD~Iv~npp~~~~~~~~~~~~~~~~~~~l~~~~~ 202 (250)
T 1o9g_A 130 AARRLRERLTAEGGA-------LPCAIRTADVFDPRALSAVLAGSAPDVVLTDLPYGERTHWEGQVPGQPVAGLLRSLAS 202 (250)
T ss_dssp HHHHHHHHHHHTTSS-------CCEEEEECCTTCGGGHHHHHTTCCCSEEEEECCGGGSSSSSSCCCHHHHHHHHHHHHH
T ss_pred hhhhhhhhccccccc-------cccceeecccccccccccccCCCCceEEEeCCCeeccccccccccccHHHHHHHHHHH
Confidence 000000 00000000 00238889987743100 0134899999873 22 11 3556789999999
Q ss_pred hccCCcEEEE
Q 015966 323 ILKDGGVWIN 332 (397)
Q Consensus 323 ~LKPGG~wIN 332 (397)
+|||||+++-
T Consensus 203 ~LkpgG~l~~ 212 (250)
T 1o9g_A 203 ALPAHAVIAV 212 (250)
T ss_dssp HSCTTCEEEE
T ss_pred hcCCCcEEEE
Confidence 9999999995
|
| >4hc4_A Protein arginine N-methyltransferase 6; HRMT1L6, S-adenosyl-L-homocysteine, struc genomics, structural genomics consortium, SGC; HET: SAH; 1.97A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.23 E-value=2.7e-11 Score=121.96 Aligned_cols=118 Identities=19% Similarity=0.190 Sum_probs=87.1
Q ss_pred hHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccc
Q 015966 165 TERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIY 243 (397)
Q Consensus 165 ~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~Iy 243 (397)
..|..+|..-|..-...+ ++.+|||+|||+|-|+...|+.|. .|+|+|.|. |+..|+-+... +
T Consensus 65 ~~Rt~aY~~Ai~~~~~~~------~~k~VLDvG~GtGiLs~~Aa~aGA~~V~ave~s~-~~~~a~~~~~~----n----- 128 (376)
T 4hc4_A 65 RVRTDAYRLGILRNWAAL------RGKTVLDVGAGTGILSIFCAQAGARRVYAVEASA-IWQQAREVVRF----N----- 128 (376)
T ss_dssp HHHHHHHHHHHHTTHHHH------TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-THHHHHHHHHH----T-----
T ss_pred HHHHHHHHHHHHhCHHhc------CCCEEEEeCCCccHHHHHHHHhCCCEEEEEeChH-HHHHHHHHHHH----c-----
Confidence 456677765553222223 456899999999999999999997 699999995 88777654321 1
Q ss_pred cccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe---eccCChhhHHHHHHHH
Q 015966 244 PWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEII 320 (397)
Q Consensus 244 Pfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~---FFIDta~Ni~~yi~~I 320 (397)
...+.+.++.||+.++-. .++||+||+- +++.....+..++...
T Consensus 129 -----------------------------~~~~~i~~i~~~~~~~~l----pe~~DvivsE~~~~~l~~e~~l~~~l~a~ 175 (376)
T 4hc4_A 129 -----------------------------GLEDRVHVLPGPVETVEL----PEQVDAIVSEWMGYGLLHESMLSSVLHAR 175 (376)
T ss_dssp -----------------------------TCTTTEEEEESCTTTCCC----SSCEEEEECCCCBTTBTTTCSHHHHHHHH
T ss_pred -----------------------------CCCceEEEEeeeeeeecC----CccccEEEeecccccccccchhhhHHHHH
Confidence 112347889999988743 3789999984 4555555577889999
Q ss_pred HHhccCCcEEE
Q 015966 321 SRILKDGGVWI 331 (397)
Q Consensus 321 ~~~LKPGG~wI 331 (397)
.++|||||++|
T Consensus 176 ~r~Lkp~G~~i 186 (376)
T 4hc4_A 176 TKWLKEGGLLL 186 (376)
T ss_dssp HHHEEEEEEEE
T ss_pred HhhCCCCceEC
Confidence 99999999999
|
| >3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A* | Back alignment and structure |
|---|
Probab=99.23 E-value=6.8e-11 Score=107.00 Aligned_cols=107 Identities=13% Similarity=0.036 Sum_probs=78.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|..+..||++ |..|+|+|+|..|+..++..+...
T Consensus 58 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------------------------------- 106 (223)
T 3duw_A 58 GARNILEIGTLGGYSTIWLARGLSSGGRVVTLEASEKHADIARSNIERA------------------------------- 106 (223)
T ss_dssp TCSEEEEECCTTSHHHHHHHTTCCSSCEEEEEESCHHHHHHHHHHHHHT-------------------------------
T ss_pred CCCEEEEecCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-------------------------------
Confidence 4579999999999999999998 889999999999998776332110
Q ss_pred CCCCCCCCCCCcceeEecccccccCC-C-CCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCC
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSD-P-SQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL 336 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~-~-~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPL 336 (397)
....++.++.||+.+.... + ...+.||+|+.... ..+...+++.+.++|||||++|--.++
T Consensus 107 -------~~~~~v~~~~~d~~~~~~~~~~~~~~~fD~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~~~~ 169 (223)
T 3duw_A 107 -------NLNDRVEVRTGLALDSLQQIENEKYEPFDFIFIDAD---KQNNPAYFEWALKLSRPGTVIIGDNVV 169 (223)
T ss_dssp -------TCTTTEEEEESCHHHHHHHHHHTTCCCCSEEEECSC---GGGHHHHHHHHHHTCCTTCEEEEESCS
T ss_pred -------CCCCcEEEEEcCHHHHHHHHHhcCCCCcCEEEEcCC---cHHHHHHHHHHHHhcCCCcEEEEeCCC
Confidence 0112378889998764210 0 01257999975322 445679999999999999998854443
|
| >1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.22 E-value=8.6e-11 Score=110.73 Aligned_cols=138 Identities=14% Similarity=0.074 Sum_probs=98.1
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccc
Q 015966 171 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIH 247 (397)
Q Consensus 171 y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~ 247 (397)
|+.-+..+.+.+.. .++.+|||+|||+|.++..|+++ +..|+|+|+|..|+..++..+...
T Consensus 97 ~~~~~~~i~~~~~~---~~~~~VLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~------------- 160 (277)
T 1o54_A 97 YPKDSSFIAMMLDV---KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW------------- 160 (277)
T ss_dssp CHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHT-------------
T ss_pred CHHHHHHHHHHhCC---CCCCEEEEECCcCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHc-------------
Confidence 44444555555432 25679999999999999999998 579999999999998776322110
Q ss_pred cccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCC
Q 015966 248 SNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDG 327 (397)
Q Consensus 248 ~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPG 327 (397)
. ...++.+..+|+.+... .+.||+|+.. . ++..++++.+.++||||
T Consensus 161 -------------~------------~~~~v~~~~~d~~~~~~----~~~~D~V~~~----~-~~~~~~l~~~~~~L~pg 206 (277)
T 1o54_A 161 -------------G------------LIERVTIKVRDISEGFD----EKDVDALFLD----V-PDPWNYIDKCWEALKGG 206 (277)
T ss_dssp -------------T------------CGGGEEEECCCGGGCCS----CCSEEEEEEC----C-SCGGGTHHHHHHHEEEE
T ss_pred -------------C------------CCCCEEEEECCHHHccc----CCccCEEEEC----C-cCHHHHHHHHHHHcCCC
Confidence 0 01236778899887632 4689999873 2 34457899999999999
Q ss_pred cEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 328 GVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 328 G~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
|+++-..|.. -..+++.+.+++.||..++..
T Consensus 207 G~l~~~~~~~----------------~~~~~~~~~l~~~gf~~~~~~ 237 (277)
T 1o54_A 207 GRFATVCPTT----------------NQVQETLKKLQELPFIRIEVW 237 (277)
T ss_dssp EEEEEEESSH----------------HHHHHHHHHHHHSSEEEEEEE
T ss_pred CEEEEEeCCH----------------HHHHHHHHHHHHCCCceeEEE
Confidence 9999643321 124677788888999987743
|
| >2h00_A Methyltransferase 10 domain containing protein; structural genomics, structural genomics consortium, SGC; HET: SAH; 2.00A {Homo sapiens} SCOP: c.66.1.54 | Back alignment and structure |
|---|
Probab=99.22 E-value=1.9e-11 Score=113.13 Aligned_cols=148 Identities=11% Similarity=0.064 Sum_probs=87.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++..||++ +..|+|+|+|..|+..|+..+...
T Consensus 65 ~~~~vLDlG~G~G~~~~~la~~~~~~~v~gvD~s~~~~~~a~~~~~~~-------------------------------- 112 (254)
T 2h00_A 65 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNVEQN-------------------------------- 112 (254)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHT--------------------------------
T ss_pred CCCEEEEeCCChhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHc--------------------------------
Confidence 4679999999999999999987 789999999999998877332110
Q ss_pred CCCCCCCCCCcceeEeccccc-ccC-CCCC-CCCccEEEEe--eccCC--h-----hh------HHHHHHHHHHhccCCc
Q 015966 267 IHPASAGITEGFSMCGGDFVE-VYS-DPSQ-VGAWDAVVTC--FFIDT--A-----HN------IVEYIEIISRILKDGG 328 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~e-ly~-~~~~-~~~fD~VvT~--FFIDt--a-----~N------i~~yi~~I~~~LKPGG 328 (397)
....++.++.+|+.+ +.. .+.. +++||+|++. |+-.. . .+ ....+..++++|||||
T Consensus 113 ------~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~i~~npp~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~LkpgG 186 (254)
T 2h00_A 113 ------NLSDLIKVVKVPQKTLLMDALKEESEIIYDFCMCNPPFFANQLEAKGVNSRNPRRPPPSSVNTGGITEIMAEGG 186 (254)
T ss_dssp ------TCTTTEEEEECCTTCSSTTTSTTCCSCCBSEEEECCCCC-------------------------CTTTTHHHHT
T ss_pred ------CCCccEEEEEcchhhhhhhhhhcccCCcccEEEECCCCccCcchhcccccccccccCCHHHHhhhHHHHEecCC
Confidence 011236788888665 221 1111 2589999987 43211 0 11 1245678899999999
Q ss_pred EEEEecCCc---chhhhccCC-CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 329 VWINLGPLL---YHFADLYGQ-EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 329 ~wIN~GPLl---Yh~~d~~g~-~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
.+.-+-+++ +.+-...+- ..+....-+.+++.+++++.||+.++..
T Consensus 187 ~l~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~Gf~~v~~~ 236 (254)
T 2h00_A 187 ELEFVKRIIHDSLQLKKRLRWYSCMLGKKCSLAPLKEELRIQGVPKVTYT 236 (254)
T ss_dssp HHHHHHHHHHHHHHHGGGBSCEEEEESSTTSHHHHHHHHHHTTCSEEEEE
T ss_pred EEEEEHHHHHHHHhcccceEEEEECCCChhHHHHHHHHHHHcCCCceEEE
Confidence 776321110 000000000 0001122356899999999999877643
|
| >3dxy_A TRNA (guanine-N(7)-)-methyltransferase; rossmann fold methyltransferase, tRNA modification, S-adenosyl-L-methionine, TR processing; HET: SAM; 1.50A {Escherichia coli} PDB: 3dxx_A* 3dxz_A* | Back alignment and structure |
|---|
Probab=99.22 E-value=2.9e-11 Score=111.64 Aligned_cols=104 Identities=20% Similarity=0.158 Sum_probs=74.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++..||+++ ..|+|+|+|..|+..++-... .. .
T Consensus 34 ~~~~vLDiGcG~G~~~~~lA~~~p~~~v~giD~s~~~l~~a~~~~~---~~-----------------------~----- 82 (218)
T 3dxy_A 34 EAPVTLEIGFGMGASLVAMAKDRPEQDFLGIEVHSPGVGACLASAH---EE-----------------------G----- 82 (218)
T ss_dssp CCCEEEEESCTTCHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHH---HT-----------------------T-----
T ss_pred CCCeEEEEeeeChHHHHHHHHHCCCCeEEEEEecHHHHHHHHHHHH---Hh-----------------------C-----
Confidence 46799999999999999999984 569999999999987662211 00 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCC---hhhH------HHHHHHHHHhccCCcEEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT---AHNI------VEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDt---a~Ni------~~yi~~I~~~LKPGG~wIN 332 (397)
..++.++.+|+.++......+++||.|+..| .|. .... ..+++.++++|||||+++-
T Consensus 83 --------l~nv~~~~~Da~~~l~~~~~~~~~d~v~~~~-~~p~~~~~~~~rr~~~~~~l~~~~r~LkpGG~l~i 148 (218)
T 3dxy_A 83 --------LSNLRVMCHDAVEVLHKMIPDNSLRMVQLFF-PDPWHKARHNKRRIVQVPFAELVKSKLQLGGVFHM 148 (218)
T ss_dssp --------CSSEEEECSCHHHHHHHHSCTTCEEEEEEES-CCCCCSGGGGGGSSCSHHHHHHHHHHEEEEEEEEE
T ss_pred --------CCcEEEEECCHHHHHHHHcCCCChheEEEeC-CCCccchhhhhhhhhhHHHHHHHHHHcCCCcEEEE
Confidence 0237889999887521001258999997654 222 1111 1599999999999999883
|
| >1vbf_A 231AA long hypothetical protein-L-isoaspartate O- methyltransferase; trimeric coiled coil assembly; 2.80A {Sulfolobus tokodaii} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=99.22 E-value=6.3e-11 Score=107.54 Aligned_cols=110 Identities=19% Similarity=0.078 Sum_probs=81.9
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccc
Q 015966 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (397)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~ 249 (397)
..+.+++.+.+.+.. .++.+|||+|||+|.++..|++.|..|+|+|+|..|+..++-.+..
T Consensus 54 ~~~~~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~---------------- 114 (231)
T 1vbf_A 54 TALNLGIFMLDELDL---HKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSY---------------- 114 (231)
T ss_dssp CCHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTT----------------
T ss_pred CCHHHHHHHHHhcCC---CCCCEEEEEcCCCCHHHHHHHHHcCEEEEEeCCHHHHHHHHHHHhh----------------
Confidence 345667777766642 2567999999999999999999999999999999999877632210
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcE
Q 015966 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGV 329 (397)
Q Consensus 250 Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~ 329 (397)
.+ ++.++.+|+.+... ..++||+|++...+.... +.+.++|||||+
T Consensus 115 ------------------------~~-~v~~~~~d~~~~~~---~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG~ 160 (231)
T 1vbf_A 115 ------------------------YN-NIKLILGDGTLGYE---EEKPYDRVVVWATAPTLL------CKPYEQLKEGGI 160 (231)
T ss_dssp ------------------------CS-SEEEEESCGGGCCG---GGCCEEEEEESSBBSSCC------HHHHHTEEEEEE
T ss_pred ------------------------cC-CeEEEECCcccccc---cCCCccEEEECCcHHHHH------HHHHHHcCCCcE
Confidence 00 26778899876322 247899999876554322 468899999999
Q ss_pred EEE
Q 015966 330 WIN 332 (397)
Q Consensus 330 wIN 332 (397)
+|-
T Consensus 161 l~~ 163 (231)
T 1vbf_A 161 MIL 163 (231)
T ss_dssp EEE
T ss_pred EEE
Confidence 985
|
| >2y1w_A Histone-arginine methyltransferase CARM1; histone modification; HET: SFG 849; 2.10A {Homo sapiens} PDB: 2y1x_A* 3b3f_A* 3b3g_A 2v74_B* 2v7e_A | Back alignment and structure |
|---|
Probab=99.22 E-value=4.2e-11 Score=117.75 Aligned_cols=100 Identities=18% Similarity=0.162 Sum_probs=75.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|.++..+|++|. .|+|+|.|. |+..++-.+...
T Consensus 50 ~~~~VLDiGcGtG~ls~~la~~g~~~V~~vD~s~-~~~~a~~~~~~~--------------------------------- 95 (348)
T 2y1w_A 50 KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSN--------------------------------- 95 (348)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECST-HHHHHHHHHHHT---------------------------------
T ss_pred CcCEEEEcCCCccHHHHHHHhCCCCEEEEECCHH-HHHHHHHHHHHc---------------------------------
Confidence 567999999999999999999987 899999995 876665332110
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeec--cCChhhHHHHHHHHHHhccCCcEEE
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF--IDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FF--IDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
....++.++.+|+.++-. .++||+|++... .-..+++.+.+..+.++|||||++|
T Consensus 96 -----~l~~~v~~~~~d~~~~~~----~~~~D~Ivs~~~~~~~~~~~~~~~l~~~~~~LkpgG~li 152 (348)
T 2y1w_A 96 -----NLTDRIVVIPGKVEEVSL----PEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMF 152 (348)
T ss_dssp -----TCTTTEEEEESCTTTCCC----SSCEEEEEECCCBTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred -----CCCCcEEEEEcchhhCCC----CCceeEEEEeCchhcCChHHHHHHHHHHHhhcCCCeEEE
Confidence 011237889999887632 368999998632 1123457788889999999999998
|
| >2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46 | Back alignment and structure |
|---|
Probab=99.22 E-value=4.8e-11 Score=107.97 Aligned_cols=101 Identities=15% Similarity=0.003 Sum_probs=73.3
Q ss_pred CCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 190 PPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
+.+|||+|||+|.++..++++|. .|+|+|+|..|+..++..+... .
T Consensus 55 ~~~vLDlgcG~G~~~~~l~~~~~~~V~~vD~s~~~l~~a~~~~~~~--------------------------~------- 101 (202)
T 2fpo_A 55 DAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATL--------------------------K------- 101 (202)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHT--------------------------T-------
T ss_pred CCeEEEeCCCcCHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHc--------------------------C-------
Confidence 46899999999999999999986 8999999999998877322100 0
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHH--hccCCcEEEE
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISR--ILKDGGVWIN 332 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~--~LKPGG~wIN 332 (397)
. .++.++.+|+.++.. ...++||+|++..-.. ..+..+.++.+.+ +|||||+++-
T Consensus 102 -----~-~~v~~~~~D~~~~~~--~~~~~fD~V~~~~p~~-~~~~~~~l~~l~~~~~L~pgG~l~i 158 (202)
T 2fpo_A 102 -----A-GNARVVNSNAMSFLA--QKGTPHNIVFVDPPFR-RGLLEETINLLEDNGWLADEALIYV 158 (202)
T ss_dssp -----C-CSEEEECSCHHHHHS--SCCCCEEEEEECCSSS-TTTHHHHHHHHHHTTCEEEEEEEEE
T ss_pred -----C-CcEEEEECCHHHHHh--hcCCCCCEEEECCCCC-CCcHHHHHHHHHhcCccCCCcEEEE
Confidence 0 136788999877432 2346899998753111 2345577788865 5999999983
|
| >3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.22 E-value=4.2e-11 Score=108.32 Aligned_cols=112 Identities=13% Similarity=0.108 Sum_probs=81.1
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccccc
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~S 250 (397)
++..+.... ++.+|||+|||+|..+..||+. +..|+|+|+|..|+..++-.+...
T Consensus 55 ~l~~l~~~~------~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~---------------- 112 (225)
T 3tr6_A 55 LLALLVKLM------QAKKVIDIGTFTGYSAIAMGLALPKDGTLITCDVDEKSTALAKEYWEKA---------------- 112 (225)
T ss_dssp HHHHHHHHH------TCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESCHHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHhh------CCCEEEEeCCcchHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHHHHHHC----------------
Confidence 555555433 3569999999999999999998 889999999999998776433210
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCC---CCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCC
Q 015966 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD---PSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDG 327 (397)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~---~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPG 327 (397)
....++.++.+|+.+.... ....++||+|+... ...+...+++.+.++||||
T Consensus 113 ----------------------~~~~~v~~~~~d~~~~~~~~~~~~~~~~fD~v~~~~---~~~~~~~~l~~~~~~L~pg 167 (225)
T 3tr6_A 113 ----------------------GLSDKIGLRLSPAKDTLAELIHAGQAWQYDLIYIDA---DKANTDLYYEESLKLLREG 167 (225)
T ss_dssp ----------------------TCTTTEEEEESCHHHHHHHHHTTTCTTCEEEEEECS---CGGGHHHHHHHHHHHEEEE
T ss_pred ----------------------CCCCceEEEeCCHHHHHHHhhhccCCCCccEEEECC---CHHHHHHHHHHHHHhcCCC
Confidence 0112377888998664320 00117899997422 3456788999999999999
Q ss_pred cEEEE
Q 015966 328 GVWIN 332 (397)
Q Consensus 328 G~wIN 332 (397)
|++|-
T Consensus 168 G~lv~ 172 (225)
T 3tr6_A 168 GLIAV 172 (225)
T ss_dssp EEEEE
T ss_pred cEEEE
Confidence 99994
|
| >2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication, RNA modification, SAM binding; 2.10A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.8e-12 Score=123.92 Aligned_cols=114 Identities=15% Similarity=0.084 Sum_probs=82.8
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
....|.+.++.. .+.+|||+|||+|.++..++++| ..|+|+|+|..|+..++-.+.. +
T Consensus 184 ~~~~ll~~l~~~---~~~~VLDlGcG~G~~~~~la~~~~~~~v~~vD~s~~~l~~a~~~~~~----~------------- 243 (343)
T 2pjd_A 184 GSQLLLSTLTPH---TKGKVLDVGCGAGVLSVAFARHSPKIRLTLCDVSAPAVEASRATLAA----N------------- 243 (343)
T ss_dssp HHHHHHHHSCTT---CCSBCCBTTCTTSHHHHHHHHHCTTCBCEEEESBHHHHHHHHHHHHH----T-------------
T ss_pred HHHHHHHhcCcC---CCCeEEEecCccCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH----h-------------
Confidence 445555555322 35689999999999999999998 5899999999999877632210 0
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC-----ChhhHHHHHHHHHHhccC
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID-----TAHNIVEYIEIISRILKD 326 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID-----ta~Ni~~yi~~I~~~LKP 326 (397)
.+ ...++.+|+.+.. .++||+|++..-+. ...+...+++.++++|||
T Consensus 244 ---------~~--------------~~~~~~~d~~~~~-----~~~fD~Iv~~~~~~~g~~~~~~~~~~~l~~~~~~Lkp 295 (343)
T 2pjd_A 244 ---------GV--------------EGEVFASNVFSEV-----KGRFDMIISNPPFHDGMQTSLDAAQTLIRGAVRHLNS 295 (343)
T ss_dssp ---------TC--------------CCEEEECSTTTTC-----CSCEEEEEECCCCCSSSHHHHHHHHHHHHHHGGGEEE
T ss_pred ---------CC--------------CCEEEEccccccc-----cCCeeEEEECCCcccCccCCHHHHHHHHHHHHHhCCC
Confidence 00 1345778876632 47899999875332 345578899999999999
Q ss_pred CcEEEEecC
Q 015966 327 GGVWINLGP 335 (397)
Q Consensus 327 GG~wIN~GP 335 (397)
||.++-+.+
T Consensus 296 gG~l~i~~~ 304 (343)
T 2pjd_A 296 GGELRIVAN 304 (343)
T ss_dssp EEEEEEEEE
T ss_pred CcEEEEEEc
Confidence 999996544
|
| >3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum} | Back alignment and structure |
|---|
Probab=99.21 E-value=6e-11 Score=109.74 Aligned_cols=121 Identities=12% Similarity=0.105 Sum_probs=86.4
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccc
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~ 249 (397)
.++..|....+. +++.+||++|||+|..+..||+. |..|+|+|+|..|+..|+-.+...
T Consensus 43 ~~l~~l~~~~~~---~~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------------- 104 (221)
T 3dr5_A 43 QLLTTLAATTNG---NGSTGAIAITPAAGLVGLYILNGLADNTTLTCIDPESEHQRQAKALFREA--------------- 104 (221)
T ss_dssp HHHHHHHHHSCC---TTCCEEEEESTTHHHHHHHHHHHSCTTSEEEEECSCHHHHHHHHHHHHHT---------------
T ss_pred HHHHHHHHhhCC---CCCCCEEEEcCCchHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc---------------
Confidence 466666665432 23569999999999999999985 689999999999998776332211
Q ss_pred cCCCCcccCccccccCCCCCCCCCCC-CcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCc
Q 015966 250 CNSLSDSDQLRPVSIPDIHPASAGIT-EGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGG 328 (397)
Q Consensus 250 Sn~~s~~~qlr~v~iPDv~p~~~~~~-~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG 328 (397)
... .++.++.||+.++... ...++||+|+... ...+..+|++.+.++|||||
T Consensus 105 -----------------------g~~~~~i~~~~gda~~~l~~-~~~~~fD~V~~d~---~~~~~~~~l~~~~~~LkpGG 157 (221)
T 3dr5_A 105 -----------------------GYSPSRVRFLLSRPLDVMSR-LANDSYQLVFGQV---SPMDLKALVDAAWPLLRRGG 157 (221)
T ss_dssp -----------------------TCCGGGEEEECSCHHHHGGG-SCTTCEEEEEECC---CTTTHHHHHHHHHHHEEEEE
T ss_pred -----------------------CCCcCcEEEEEcCHHHHHHH-hcCCCcCeEEEcC---cHHHHHHHHHHHHHHcCCCc
Confidence 011 2478899998876421 1147899996432 23457789999999999999
Q ss_pred EEEEecCCcch
Q 015966 329 VWINLGPLLYH 339 (397)
Q Consensus 329 ~wIN~GPLlYh 339 (397)
++|- ...+|+
T Consensus 158 ~lv~-dn~~~~ 167 (221)
T 3dr5_A 158 ALVL-ADALLD 167 (221)
T ss_dssp EEEE-TTTTGG
T ss_pred EEEE-eCCCCC
Confidence 9994 334453
|
| >3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.8e-10 Score=112.58 Aligned_cols=145 Identities=17% Similarity=0.208 Sum_probs=98.8
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 175 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 175 l~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
...+.+.++.. .+..+|||+|||+|.++..|+++ +..++++|+ +.|+..++ .
T Consensus 191 ~~~~~~~~~~~--~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~---------------- 244 (368)
T 3reo_A 191 MKKILEMYNGF--EGLTTIVDVGGGTGAVASMIVAKYPSINAINFDL-PHVIQDAP-------A---------------- 244 (368)
T ss_dssp HHHHHTTCCTT--TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-------C----------------
T ss_pred HHHHHHhcccc--cCCCEEEEeCCCcCHHHHHHHHhCCCCEEEEEeh-HHHHHhhh-------h----------------
Confidence 34455555421 25679999999999999999996 568999999 87863111 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCCcEE
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVW 330 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPGG~w 330 (397)
..++.++.|||.+- .| .+ |+|+..+.+. ..++....|+.++++|||||++
T Consensus 245 ----------------------~~~v~~~~~d~~~~--~p--~~--D~v~~~~vlh~~~~~~~~~~l~~~~~~L~pgG~l 296 (368)
T 3reo_A 245 ----------------------FSGVEHLGGDMFDG--VP--KG--DAIFIKWICHDWSDEHCLKLLKNCYAALPDHGKV 296 (368)
T ss_dssp ----------------------CTTEEEEECCTTTC--CC--CC--SEEEEESCGGGBCHHHHHHHHHHHHHHSCTTCEE
T ss_pred ----------------------cCCCEEEecCCCCC--CC--CC--CEEEEechhhcCCHHHHHHHHHHHHHHcCCCCEE
Confidence 01378899999862 22 23 9998877664 4556778999999999999998
Q ss_pred EEecCCcch------------hhh--ccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 331 INLGPLLYH------------FAD--LYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 331 IN~GPLlYh------------~~d--~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
|-.-..+-. ..+ ... ......+.|.+|++++++++||++++..
T Consensus 297 ~i~e~~~~~~~~~~~~~~~~~~~d~~~~~-~~~~g~~rt~~e~~~ll~~AGF~~v~~~ 353 (368)
T 3reo_A 297 IVAEYILPPSPDPSIATKVVIHTDALMLA-YNPGGKERTEKEFQALAMASGFRGFKVA 353 (368)
T ss_dssp EEEECCCCSSCCCCHHHHHHHHHHHHHHH-HSSBCCCCCHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEeccCCCCCCchhhhHHHhhhHHHHh-hcCCCccCCHHHHHHHHHHCCCeeeEEE
Confidence 853221100 000 000 0001346799999999999999998854
|
| >1wy7_A Hypothetical protein PH1948; seven-stranded beta sheet, methyltransferase fold, structura genomics, transferase; HET: SAH; 2.20A {Pyrococcus horikoshii} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.20 E-value=2.3e-10 Score=102.12 Aligned_cols=120 Identities=18% Similarity=0.062 Sum_probs=87.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|.++..++++|. .|+|+|+|..|+..++..+... +
T Consensus 49 ~~~~vlD~g~G~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------------------------~------ 96 (207)
T 1wy7_A 49 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLIENLGEF--------------------------K------ 96 (207)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHTGGG--------------------------T------
T ss_pred CcCEEEEeeCCCCHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHc--------------------------C------
Confidence 567999999999999999999987 5999999999998776321100 0
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--eccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccC
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g 345 (397)
. ++.++.+|+.++ . ++||+|++. |+.........+++.+.++| ||+++.. . .
T Consensus 97 ------~--~~~~~~~d~~~~-~-----~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~l--~~~~~~~----~--~---- 150 (207)
T 1wy7_A 97 ------G--KFKVFIGDVSEF-N-----SRVDIVIMNPPFGSQRKHADRPFLLKAFEIS--DVVYSIH----L--A---- 150 (207)
T ss_dssp ------T--SEEEEESCGGGC-C-----CCCSEEEECCCCSSSSTTTTHHHHHHHHHHC--SEEEEEE----E--C----
T ss_pred ------C--CEEEEECchHHc-C-----CCCCEEEEcCCCccccCCchHHHHHHHHHhc--CcEEEEE----e--C----
Confidence 0 267889998874 2 489999987 44433344568899999999 7776632 0 0
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 346 QEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 346 ~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
-.-+.+.+.+++++.||++..
T Consensus 151 ------~~~~~~~~~~~l~~~g~~~~~ 171 (207)
T 1wy7_A 151 ------KPEVRRFIEKFSWEHGFVVTH 171 (207)
T ss_dssp ------CHHHHHHHHHHHHHTTEEEEE
T ss_pred ------CcCCHHHHHHHHHHCCCeEEE
Confidence 012356678888999998876
|
| >1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=3.7e-11 Score=102.08 Aligned_cols=119 Identities=13% Similarity=0.035 Sum_probs=81.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|.++..++++ +..++|+|+|. |+..
T Consensus 22 ~~~~vLd~G~G~G~~~~~l~~~~~~~~~v~~~D~~~-~~~~--------------------------------------- 61 (180)
T 1ej0_A 22 PGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-MDPI--------------------------------------- 61 (180)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-CCCC---------------------------------------
T ss_pred CCCeEEEeCCCCCHHHHHHHHHhCCCCeEEEEECcc-cccc---------------------------------------
Confidence 5679999999999999999998 47999999999 7410
Q ss_pred CCCCCCCCCCCcceeEecccccccC---CC--CCCCCccEEEEeeccCChhhH-----------HHHHHHHHHhccCCcE
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYS---DP--SQVGAWDAVVTCFFIDTAHNI-----------VEYIEIISRILKDGGV 329 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~---~~--~~~~~fD~VvT~FFIDta~Ni-----------~~yi~~I~~~LKPGG~ 329 (397)
.++.+..+|+.+... .+ ...++||+|++...+....+. ..+++.+.++|||||+
T Consensus 62 ----------~~~~~~~~d~~~~~~~~~~~~~~~~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~ 131 (180)
T 1ej0_A 62 ----------VGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGS 131 (180)
T ss_dssp ----------TTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEE
T ss_pred ----------CcEEEEEcccccchhhhhhhccCCCCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcE
Confidence 015567778766410 00 124789999985433221111 5889999999999999
Q ss_pred EEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 330 WINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 330 wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
+|-..+. .-..+++...+... |+.+...
T Consensus 132 l~~~~~~----------------~~~~~~~~~~~~~~-~~~~~~~ 159 (180)
T 1ej0_A 132 FVVKVFQ----------------GEGFDEYLREIRSL-FTKVKVR 159 (180)
T ss_dssp EEEEEES----------------STTHHHHHHHHHHH-EEEEEEE
T ss_pred EEEEEec----------------CCcHHHHHHHHHHh-hhhEEee
Confidence 9952221 12346777777774 7766543
|
| >3tma_A Methyltransferase; thump domain; 2.05A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.18 E-value=3.6e-10 Score=110.76 Aligned_cols=138 Identities=15% Similarity=0.109 Sum_probs=95.3
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHHhhhhcccccCcccccccccccc
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~S 250 (397)
+...+...... .++.+|||||||+|.++.++|..+ ..|+|+|+|..|+..|+-.+...
T Consensus 191 la~~l~~~~~~---~~~~~vLD~gcGsG~~~ie~a~~~~~~~~v~g~Di~~~~i~~a~~n~~~~---------------- 251 (354)
T 3tma_A 191 LAQALLRLADA---RPGMRVLDPFTGSGTIALEAASTLGPTSPVYAGDLDEKRLGLAREAALAS---------------- 251 (354)
T ss_dssp HHHHHHHHTTC---CTTCCEEESSCTTSHHHHHHHHHHCTTSCEEEEESCHHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHHhCC---CCCCEEEeCCCCcCHHHHHHHHhhCCCceEEEEECCHHHHHHHHHHHHHc----------------
Confidence 44444444332 256799999999999999999986 89999999999998877332110
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--ec--cCChhh----HHHHHHHHHH
Q 015966 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FF--IDTAHN----IVEYIEIISR 322 (397)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FF--IDta~N----i~~yi~~I~~ 322 (397)
... ++.+..+|+.++.. ..+.||+|++. |. +....+ ...+++.+.+
T Consensus 252 ----------------------g~~-~i~~~~~D~~~~~~---~~~~~D~Ii~npPyg~r~~~~~~~~~~~~~~~~~~~~ 305 (354)
T 3tma_A 252 ----------------------GLS-WIRFLRADARHLPR---FFPEVDRILANPPHGLRLGRKEGLFHLYWDFLRGALA 305 (354)
T ss_dssp ----------------------TCT-TCEEEECCGGGGGG---TCCCCSEEEECCCSCC----CHHHHHHHHHHHHHHHH
T ss_pred ----------------------CCC-ceEEEeCChhhCcc---ccCCCCEEEECCCCcCccCCcccHHHHHHHHHHHHHH
Confidence 011 37889999988643 23568999995 32 222222 2568899999
Q ss_pred hccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeec
Q 015966 323 ILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTI 376 (397)
Q Consensus 323 ~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i 376 (397)
+|||||.++-+- -..+.++.+++ .||+..+.+.+
T Consensus 306 ~LkpgG~l~i~t-------------------~~~~~~~~~~~-~g~~~~~~~~l 339 (354)
T 3tma_A 306 LLPPGGRVALLT-------------------LRPALLKRALP-PGFALRHARVV 339 (354)
T ss_dssp TSCTTCEEEEEE-------------------SCHHHHHHHCC-TTEEEEEEEEC
T ss_pred hcCCCcEEEEEe-------------------CCHHHHHHHhh-cCcEEEEEEEE
Confidence 999999998521 12344555666 89999887654
|
| >2ozv_A Hypothetical protein ATU0636; structural genomics, predicted transferase, predicted O-methyltransferase, PFAM PF05175; HET: MSE; 1.70A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.17 E-value=2e-10 Score=108.31 Aligned_cols=132 Identities=14% Similarity=0.029 Sum_probs=88.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++..||+++ ..|+|+|+|..|+..|+..+.... + .
T Consensus 36 ~~~~VLDlG~G~G~~~l~la~~~~~~~v~gvDi~~~~~~~a~~n~~~~~---------------~-----~--------- 86 (260)
T 2ozv_A 36 RACRIADLGAGAGAAGMAVAARLEKAEVTLYERSQEMAEFARRSLELPD---------------N-----A--------- 86 (260)
T ss_dssp SCEEEEECCSSSSHHHHHHHHHCTTEEEEEEESSHHHHHHHHHHTTSGG---------------G-----T---------
T ss_pred CCCEEEEeCChHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHhhh---------------h-----C---------
Confidence 56799999999999999999995 789999999999987763211000 0 0
Q ss_pred CCCCCCCCCCcceeEecccccccC----CCCCCCCccEEEEe--eccCC----------------hhhHHHHHHHHHHhc
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYS----DPSQVGAWDAVVTC--FFIDT----------------AHNIVEYIEIISRIL 324 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~----~~~~~~~fD~VvT~--FFIDt----------------a~Ni~~yi~~I~~~L 324 (397)
...+++.++.+|+.++.. .+...++||+|++. ||... ..++.++++.+.++|
T Consensus 87 ------~l~~~v~~~~~D~~~~~~~~~~~~~~~~~fD~Vv~nPPy~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~~~L 160 (260)
T 2ozv_A 87 ------AFSARIEVLEADVTLRAKARVEAGLPDEHFHHVIMNPPYNDAGDRRTPDALKAEAHAMTEGLFEDWIRTASAIM 160 (260)
T ss_dssp ------TTGGGEEEEECCTTCCHHHHHHTTCCTTCEEEEEECCCC---------------------CCHHHHHHHHHHHE
T ss_pred ------CCcceEEEEeCCHHHHhhhhhhhccCCCCcCEEEECCCCcCCCCCCCcCHHHHHHhhcCcCCHHHHHHHHHHHc
Confidence 011237789999887621 00124789999987 54321 123678999999999
Q ss_pred cCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 325 KDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 325 KPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
||||+++-+-|- -..+++..++++. |...+.
T Consensus 161 kpgG~l~~~~~~-----------------~~~~~~~~~l~~~-~~~~~i 191 (260)
T 2ozv_A 161 VSGGQLSLISRP-----------------QSVAEIIAACGSR-FGGLEI 191 (260)
T ss_dssp EEEEEEEEEECG-----------------GGHHHHHHHHTTT-EEEEEE
T ss_pred CCCCEEEEEEcH-----------------HHHHHHHHHHHhc-CCceEE
Confidence 999999842110 1346777888764 765553
|
| >3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.17 E-value=3.3e-11 Score=111.93 Aligned_cols=122 Identities=14% Similarity=0.056 Sum_probs=90.0
Q ss_pred hhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccc
Q 015966 164 KTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWN 241 (397)
Q Consensus 164 ~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~ 241 (397)
-.||-.+|.++-..+..+++ +..+|||+|||+|-+|..++.. +..+.|+|+|..|+.+++-.+...
T Consensus 29 TReRLp~ld~fY~~~~~~l~-----~~~~VLDlGCG~GplAl~l~~~~p~a~~~A~Di~~~~leiar~~~~~~------- 96 (200)
T 3fzg_A 29 TNERVATLNDFYTYVFGNIK-----HVSSILDFGCGFNPLALYQWNENEKIIYHAYDIDRAEIAFLSSIIGKL------- 96 (200)
T ss_dssp HHTTGGGHHHHHHHHHHHSC-----CCSEEEEETCTTHHHHHHHHCSSCCCEEEEECSCHHHHHHHHHHHHHS-------
T ss_pred HHHHhHhHHHHHHHHHhhcC-----CCCeEEEecCCCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhc-------
Confidence 45777788888888888775 4669999999999999999888 789999999999999888443211
Q ss_pred cccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHH
Q 015966 242 IYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIIS 321 (397)
Q Consensus 242 IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~ 321 (397)
+ ...++.+ +|+.+.. ..+.||+|+..-.|...++....+..|+
T Consensus 97 -------------------g------------~~~~v~~--~d~~~~~----~~~~~DvVLa~k~LHlL~~~~~al~~v~ 139 (200)
T 3fzg_A 97 -------------------K------------TTIKYRF--LNKESDV----YKGTYDVVFLLKMLPVLKQQDVNILDFL 139 (200)
T ss_dssp -------------------C------------CSSEEEE--ECCHHHH----TTSEEEEEEEETCHHHHHHTTCCHHHHH
T ss_pred -------------------C------------CCccEEE--ecccccC----CCCCcChhhHhhHHHhhhhhHHHHHHHH
Confidence 0 0111333 5655432 2478999998755444445556777999
Q ss_pred HhccCCcEEEEec
Q 015966 322 RILKDGGVWINLG 334 (397)
Q Consensus 322 ~~LKPGG~wIN~G 334 (397)
+.|||||++|++.
T Consensus 140 ~~L~pggvfISfp 152 (200)
T 3fzg_A 140 QLFHTQNFVISFP 152 (200)
T ss_dssp HTCEEEEEEEEEE
T ss_pred HHhCCCCEEEEeC
Confidence 9999999999863
|
| >3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* | Back alignment and structure |
|---|
Probab=99.17 E-value=2.6e-10 Score=112.70 Aligned_cols=146 Identities=16% Similarity=0.197 Sum_probs=99.6
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 175 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 175 l~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
...+.+.++.. .+..+|||+|||+|.++..|+++ +..++++|+ +.|+..++ .
T Consensus 189 ~~~~~~~~~~~--~~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~-------~---------------- 242 (364)
T 3p9c_A 189 TKKLLELYHGF--EGLGTLVDVGGGVGATVAAIAAHYPTIKGVNFDL-PHVISEAP-------Q---------------- 242 (364)
T ss_dssp HHHHHHHCCTT--TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-------C----------------
T ss_pred HHHHHHhcccc--cCCCEEEEeCCCCCHHHHHHHHHCCCCeEEEecC-HHHHHhhh-------h----------------
Confidence 34455555522 25679999999999999999986 568999999 77763111 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCCcEE
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVW 330 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPGG~w 330 (397)
..++.++.|||.+- .| .+ |+|+..+.+. ..++....|+.++++|||||++
T Consensus 243 ----------------------~~~v~~~~~D~~~~--~p--~~--D~v~~~~vlh~~~d~~~~~~L~~~~~~L~pgG~l 294 (364)
T 3p9c_A 243 ----------------------FPGVTHVGGDMFKE--VP--SG--DTILMKWILHDWSDQHCATLLKNCYDALPAHGKV 294 (364)
T ss_dssp ----------------------CTTEEEEECCTTTC--CC--CC--SEEEEESCGGGSCHHHHHHHHHHHHHHSCTTCEE
T ss_pred ----------------------cCCeEEEeCCcCCC--CC--CC--CEEEehHHhccCCHHHHHHHHHHHHHHcCCCCEE
Confidence 01378899999872 22 23 9999877664 4466789999999999999999
Q ss_pred EEecCCc---------ch---hhh--ccCCCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 331 INLGPLL---------YH---FAD--LYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 331 IN~GPLl---------Yh---~~d--~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
|-.-..+ +. ..+ ... ......+.|.+|++++++++||++++...
T Consensus 295 ~i~e~~~~~~~~~~~~~~~~~~~d~~m~~-~~~~g~~rt~~e~~~ll~~AGF~~v~~~~ 352 (364)
T 3p9c_A 295 VLVQCILPVNPEANPSSQGVFHVDMIMLA-HNPGGRERYEREFQALARGAGFTGVKSTY 352 (364)
T ss_dssp EEEECCBCSSCCSSHHHHHHHHHHHHHHH-HCSSCCCCBHHHHHHHHHHTTCCEEEEEE
T ss_pred EEEEeccCCCCCcchhhhhHHHhHHHHHh-cccCCccCCHHHHHHHHHHCCCceEEEEE
Confidence 8522111 00 000 000 00013468999999999999999988653
|
| >3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca} | Back alignment and structure |
|---|
Probab=99.16 E-value=9e-11 Score=105.67 Aligned_cols=100 Identities=17% Similarity=0.162 Sum_probs=75.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
+..+|||+|||+|..+..||+. |..|+|+|+|..|+..++-.+... .
T Consensus 56 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~--------------------------~---- 105 (210)
T 3c3p_A 56 QPQLVVVPGDGLGCASWWFARAISISSRVVMIDPDRDNVEHARRMLHDN--------------------------G---- 105 (210)
T ss_dssp CCSEEEEESCGGGHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH--------------------------S----
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHC--------------------------C----
Confidence 3569999999999999999988 789999999999998776332110 0
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
...++.++.+|+.++.. ...+ ||+|+...- ..+...+++.+.++|||||++|-
T Consensus 106 --------~~~~v~~~~~d~~~~~~--~~~~-fD~v~~~~~---~~~~~~~l~~~~~~LkpgG~lv~ 158 (210)
T 3c3p_A 106 --------LIDRVELQVGDPLGIAA--GQRD-IDILFMDCD---VFNGADVLERMNRCLAKNALLIA 158 (210)
T ss_dssp --------GGGGEEEEESCHHHHHT--TCCS-EEEEEEETT---TSCHHHHHHHHGGGEEEEEEEEE
T ss_pred --------CCceEEEEEecHHHHhc--cCCC-CCEEEEcCC---hhhhHHHHHHHHHhcCCCeEEEE
Confidence 01236788899877532 1235 999986532 34567899999999999999994
|
| >2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51 | Back alignment and structure |
|---|
Probab=99.16 E-value=2.6e-10 Score=112.26 Aligned_cols=134 Identities=13% Similarity=0.005 Sum_probs=91.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|.++..+|+.|..|+|+|+|..|+..++..+... .+.
T Consensus 153 ~~~~VLDlgcGtG~~sl~la~~ga~V~~VD~s~~al~~a~~n~~~~--------------------------gl~----- 201 (332)
T 2igt_A 153 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVLA--------------------------GLE----- 201 (332)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHHH--------------------------TCT-----
T ss_pred CCCcEEEcccccCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHc--------------------------CCC-----
Confidence 4569999999999999999999999999999999998776322100 000
Q ss_pred CCCCCCCCcceeEecccccccCC-CCCCCCccEEEEe---eccC-------ChhhHHHHHHHHHHhccCCcEEEE-ecCC
Q 015966 269 PASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTC---FFID-------TAHNIVEYIEIISRILKDGGVWIN-LGPL 336 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~-~~~~~~fD~VvT~---FFID-------ta~Ni~~yi~~I~~~LKPGG~wIN-~GPL 336 (397)
..++.++.+|+.++... ....++||+|++. |-.. ...++.++++.+.++|||||+++- ...
T Consensus 202 ------~~~v~~i~~D~~~~l~~~~~~~~~fD~Ii~dPP~~~~~~~~~~~~~~~~~~~ll~~~~~~LkpgG~lli~~~~- 274 (332)
T 2igt_A 202 ------QAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGLVLTAY- 274 (332)
T ss_dssp ------TSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEEEEEEC-
T ss_pred ------ccceEEEECcHHHHHHHHHhcCCCceEEEECCccccCCchHHHHHHHHHHHHHHHHHHHhcCcCcEEEEEECC-
Confidence 01267888998775310 0013689999984 3222 234567889999999999999652 111
Q ss_pred cchhhhccCCCCCccccCCHHHHHHHHH----hCCCEEEEEe
Q 015966 337 LYHFADLYGQEDEMSIELSLEDVKRVAL----HYGFEFEKEK 374 (397)
Q Consensus 337 lYh~~d~~g~~~~~~ieLS~EEl~~ll~----~~GFeii~e~ 374 (397)
+..++.+++.+++. +.|+++....
T Consensus 275 --------------~~~~~~~~~~~~l~~a~~~~g~~v~~~e 302 (332)
T 2igt_A 275 --------------SIRASFYSMHELMRETMRGAGGVVASGE 302 (332)
T ss_dssp --------------CTTSCHHHHHHHHHHHTTTSCSEEEEEE
T ss_pred --------------CCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 12345555555555 7899987543
|
| >4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.6e-11 Score=121.31 Aligned_cols=116 Identities=12% Similarity=0.012 Sum_probs=81.7
Q ss_pred HHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCC
Q 015966 176 EELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (397)
Q Consensus 176 ~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~ 253 (397)
..|.+.++.. .+.+|||+|||+|.++..+|++ |..|+|+|+|..|+..++..+...
T Consensus 212 ~~ll~~l~~~---~~~~VLDlGcG~G~~s~~la~~~p~~~V~gvD~s~~al~~Ar~n~~~n------------------- 269 (375)
T 4dcm_A 212 RFFMQHLPEN---LEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETN------------------- 269 (375)
T ss_dssp HHHHHTCCCS---CCSEEEEETCTTCHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH-------------------
T ss_pred HHHHHhCccc---CCCeEEEEeCcchHHHHHHHHHCCCCEEEEEECcHHHHHHHHHHHHHc-------------------
Confidence 3455555532 4579999999999999999999 689999999999998777332110
Q ss_pred CcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee--c----cCChhhHHHHHHHHHHhccCC
Q 015966 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF--F----IDTAHNIVEYIEIISRILKDG 327 (397)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F--F----IDta~Ni~~yi~~I~~~LKPG 327 (397)
.+ ++ ..++.+..+|+.+.. ..++||+|++.. + +.. ....++|+.++++||||
T Consensus 270 -------gl--~~--------~~~v~~~~~D~~~~~----~~~~fD~Ii~nppfh~~~~~~~-~~~~~~l~~~~~~Lkpg 327 (375)
T 4dcm_A 270 -------MP--EA--------LDRCEFMINNALSGV----EPFRFNAVLCNPPFHQQHALTD-NVAWEMFHHARRCLKIN 327 (375)
T ss_dssp -------CG--GG--------GGGEEEEECSTTTTC----CTTCEEEEEECCCC-------C-CHHHHHHHHHHHHEEEE
T ss_pred -------CC--Cc--------CceEEEEechhhccC----CCCCeeEEEECCCcccCcccCH-HHHHHHHHHHHHhCCCC
Confidence 00 00 012677889987743 257899999863 2 111 22447899999999999
Q ss_pred cEEEEecC
Q 015966 328 GVWINLGP 335 (397)
Q Consensus 328 G~wIN~GP 335 (397)
|+++-+++
T Consensus 328 G~l~iv~n 335 (375)
T 4dcm_A 328 GELYIVAN 335 (375)
T ss_dssp EEEEEEEE
T ss_pred cEEEEEEE
Confidence 99996543
|
| >2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.16 E-value=2.7e-10 Score=104.03 Aligned_cols=136 Identities=15% Similarity=0.070 Sum_probs=93.9
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccccc
Q 015966 171 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (397)
Q Consensus 171 y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~S 250 (397)
|+..+..+.+.+.. .++.+|||+|||+|.++..+++++..|+|+|+|..|+..++..+...
T Consensus 76 ~~~~~~~~~~~~~~---~~~~~vldiG~G~G~~~~~l~~~~~~v~~vD~~~~~~~~a~~~~~~~---------------- 136 (248)
T 2yvl_A 76 YPKDSFYIALKLNL---NKEKRVLEFGTGSGALLAVLSEVAGEVWTFEAVEEFYKTAQKNLKKF---------------- 136 (248)
T ss_dssp CHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHHHHHHHT----------------
T ss_pred cchhHHHHHHhcCC---CCCCEEEEeCCCccHHHHHHHHhCCEEEEEecCHHHHHHHHHHHHHc----------------
Confidence 34445555555532 25679999999999999999999999999999999998776332100
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEE
Q 015966 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVW 330 (397)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~w 330 (397)
. ...++.+..+|+.+... ..+.||+|+.. ..+...+++.+.++|||||++
T Consensus 137 ----------~------------~~~~~~~~~~d~~~~~~---~~~~~D~v~~~-----~~~~~~~l~~~~~~L~~gG~l 186 (248)
T 2yvl_A 137 ----------N------------LGKNVKFFNVDFKDAEV---PEGIFHAAFVD-----VREPWHYLEKVHKSLMEGAPV 186 (248)
T ss_dssp ----------T------------CCTTEEEECSCTTTSCC---CTTCBSEEEEC-----SSCGGGGHHHHHHHBCTTCEE
T ss_pred ----------C------------CCCcEEEEEcChhhccc---CCCcccEEEEC-----CcCHHHHHHHHHHHcCCCCEE
Confidence 0 01236778888877531 14689999863 224457899999999999999
Q ss_pred EEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 331 INLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 331 IN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
+-..|.. -..+++.+++++. |..++
T Consensus 187 ~~~~~~~----------------~~~~~~~~~l~~~-f~~~~ 211 (248)
T 2yvl_A 187 GFLLPTA----------------NQVIKLLESIENY-FGNLE 211 (248)
T ss_dssp EEEESSH----------------HHHHHHHHHSTTT-EEEEE
T ss_pred EEEeCCH----------------HHHHHHHHHHHhh-CCcce
Confidence 9643321 1234666667666 77655
|
| >3kr9_A SAM-dependent methyltransferase; class I rossmann-like methyltransferase fold; 2.00A {Streptococcus pneumoniae} PDB: 3ku1_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=7.4e-10 Score=104.33 Aligned_cols=134 Identities=14% Similarity=0.089 Sum_probs=99.5
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 175 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 175 l~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
|+.|.++++ ++.+|||+|||+|.++..+|++|- .|+|+|++..++..|+--+.. +
T Consensus 6 L~~l~~~v~-----~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~----~-------------- 62 (225)
T 3kr9_A 6 LELVASFVS-----QGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEA----H-------------- 62 (225)
T ss_dssp HHHHHTTSC-----TTEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH----T--------------
T ss_pred HHHHHHhCC-----CCCEEEEeCCCcHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----c--------------
Confidence 455666654 457999999999999999999985 699999999999888732211 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
...+++.+..||..+.... ...||+|+.+=- -..-+.+.++...+.|+|||++|-
T Consensus 63 --------------------gl~~~i~~~~~d~l~~l~~---~~~~D~IviaG~--Gg~~i~~Il~~~~~~L~~~~~lVl 117 (225)
T 3kr9_A 63 --------------------GLKEKIQVRLANGLAAFEE---TDQVSVITIAGM--GGRLIARILEEGLGKLANVERLIL 117 (225)
T ss_dssp --------------------TCTTTEEEEECSGGGGCCG---GGCCCEEEEEEE--CHHHHHHHHHHTGGGCTTCCEEEE
T ss_pred --------------------CCCceEEEEECchhhhccc---CcCCCEEEEcCC--ChHHHHHHHHHHHHHhCCCCEEEE
Confidence 1112478899998764321 126999886532 233467889999999999999994
Q ss_pred ecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 333 LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 333 ~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
-| . -..+.+++.+.+.||+++.|.
T Consensus 118 -q~----------------~-~~~~~vr~~L~~~Gf~i~~e~ 141 (225)
T 3kr9_A 118 -QP----------------N-NREDDLRIWLQDHGFQIVAES 141 (225)
T ss_dssp -EE----------------S-SCHHHHHHHHHHTTEEEEEEE
T ss_pred -EC----------------C-CCHHHHHHHHHHCCCEEEEEE
Confidence 22 1 357899999999999999975
|
| >3lec_A NADB-rossmann superfamily protein; PSI, MCSG, structural genomics, midwest CENT structural genomics, protein structure initiative; 1.80A {Streptococcus agalactiae} | Back alignment and structure |
|---|
Probab=99.15 E-value=6e-10 Score=105.35 Aligned_cols=134 Identities=13% Similarity=0.162 Sum_probs=100.6
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 175 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 175 l~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
|+.|.++++ ++.+|||+|||+|.++..||++|- .|+|+|+|..|+..|+--+.. +
T Consensus 12 L~~i~~~v~-----~g~~VlDIGtGsG~l~i~la~~~~~~~V~AvDi~~~al~~A~~N~~~----~-------------- 68 (230)
T 3lec_A 12 LQKVANYVP-----KGARLLDVGSDHAYLPIFLLQMGYCDFAIAGEVVNGPYQSALKNVSE----H-------------- 68 (230)
T ss_dssp HHHHHTTSC-----TTEEEEEETCSTTHHHHHHHHTTCEEEEEEEESSHHHHHHHHHHHHH----T--------------
T ss_pred HHHHHHhCC-----CCCEEEEECCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----c--------------
Confidence 455666664 567999999999999999999985 599999999999988732211 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
...+++.+..||..+... ..+.||+|+.+=-. +.-|.+.++.....|+++|.||-
T Consensus 69 --------------------gl~~~I~~~~gD~l~~~~---~~~~~D~IviaGmG--g~lI~~IL~~~~~~l~~~~~lIl 123 (230)
T 3lec_A 69 --------------------GLTSKIDVRLANGLSAFE---EADNIDTITICGMG--GRLIADILNNDIDKLQHVKTLVL 123 (230)
T ss_dssp --------------------TCTTTEEEEECSGGGGCC---GGGCCCEEEEEEEC--HHHHHHHHHHTGGGGTTCCEEEE
T ss_pred --------------------CCCCcEEEEECchhhccc---cccccCEEEEeCCc--hHHHHHHHHHHHHHhCcCCEEEE
Confidence 112347889999887643 12379998764322 24477889999999999999994
Q ss_pred ecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 333 LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 333 ~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
.|. ...+++++.+.+.||++++|.
T Consensus 124 -qp~-----------------~~~~~lr~~L~~~Gf~i~~E~ 147 (230)
T 3lec_A 124 -QPN-----------------NREDDLRKWLAANDFEIVAED 147 (230)
T ss_dssp -EES-----------------SCHHHHHHHHHHTTEEEEEEE
T ss_pred -ECC-----------------CChHHHHHHHHHCCCEEEEEE
Confidence 221 347899999999999999976
|
| >3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} | Back alignment and structure |
|---|
Probab=99.15 E-value=4.1e-10 Score=109.89 Aligned_cols=140 Identities=11% Similarity=0.112 Sum_probs=92.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
+..+|||+|||+|.++..|+++. ..++++|++. |+. + ... . ..
T Consensus 184 ~~~~vLDvG~G~G~~~~~l~~~~p~~~~~~~D~~~-~~~--~---~~~---~----------------------~~---- 228 (348)
T 3lst_A 184 ATGTVADVGGGRGGFLLTVLREHPGLQGVLLDRAE-VVA--R---HRL---D----------------------AP---- 228 (348)
T ss_dssp SSEEEEEETCTTSHHHHHHHHHCTTEEEEEEECHH-HHT--T---CCC---C----------------------CG----
T ss_pred CCceEEEECCccCHHHHHHHHHCCCCEEEEecCHH-Hhh--c---ccc---c----------------------cc----
Confidence 56799999999999999999964 5688999954 432 1 000 0 00
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCCh--hhHHHHHHHHHHhccCCcEEEEecCCcch-----
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVWINLGPLLYH----- 339 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta--~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh----- 339 (397)
....++.+..+||.+. . . .||+|+....+... +.....|+.++++|||||++|-.-+..-.
T Consensus 229 ------~~~~~v~~~~~d~~~~--~---p-~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkpgG~l~i~e~~~~~~~~~~ 296 (348)
T 3lst_A 229 ------DVAGRWKVVEGDFLRE--V---P-HADVHVLKRILHNWGDEDSVRILTNCRRVMPAHGRVLVIDAVVPEGNDAH 296 (348)
T ss_dssp ------GGTTSEEEEECCTTTC--C---C-CCSEEEEESCGGGSCHHHHHHHHHHHHHTCCTTCEEEEEECCBCSSSSCC
T ss_pred ------CCCCCeEEEecCCCCC--C---C-CCcEEEEehhccCCCHHHHHHHHHHHHHhcCCCCEEEEEEeccCCCCCcc
Confidence 1123488999998732 1 2 89999987655432 33479999999999999999853221100
Q ss_pred ---hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 340 ---FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 340 ---~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
+.+..-.......+.|.+|++++++++||++++...
T Consensus 297 ~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 335 (348)
T 3lst_A 297 QSKEMDFMMLAARTGQERTAAELEPLFTAAGLRLDRVVG 335 (348)
T ss_dssp HHHHHHHHHHHTTSCCCCBHHHHHHHHHHTTEEEEEEEE
T ss_pred hhhhcChhhhhcCCCcCCCHHHHHHHHHHCCCceEEEEE
Confidence 000000000012367999999999999999988654
|
| >3ckk_A TRNA (guanine-N(7)-)-methyltransferase; mettl1, S-adenosyl-L-methionine, tRNA Pro structural genomics, structural genomics consortium, SGC; HET: SAM; 1.55A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.14 E-value=7.9e-11 Score=110.03 Aligned_cols=110 Identities=15% Similarity=0.126 Sum_probs=74.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++..||++ +..|+|+|+|..|+..|+-.+........
T Consensus 46 ~~~~vLDiGcG~G~~~~~la~~~p~~~v~GiDis~~~l~~A~~~~~~l~~~~~--------------------------- 98 (235)
T 3ckk_A 46 AQVEFADIGCGYGGLLVELSPLFPDTLILGLEIRVKVSDYVQDRIRALRAAPA--------------------------- 98 (235)
T ss_dssp CCEEEEEETCTTCHHHHHHGGGSTTSEEEEEESCHHHHHHHHHHHHHHHHSTT---------------------------
T ss_pred CCCeEEEEccCCcHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHHHHHHh---------------------------
Confidence 5679999999999999999998 57899999999999877633221100000
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhh---------HHHHHHHHHHhccCCcEEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN---------IVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N---------i~~yi~~I~~~LKPGG~wIN 332 (397)
....++.++.+|+.+.......+++||.|+.+| .|.-.. ...+++.++++|||||+++-
T Consensus 99 ------~~~~nv~~~~~d~~~~l~~~~~~~~~D~v~~~~-~dp~~k~~h~krr~~~~~~l~~~~~~LkpGG~l~~ 166 (235)
T 3ckk_A 99 ------GGFQNIACLRSNAMKHLPNFFYKGQLTKMFFLF-PDPHFKRTKHKWRIISPTLLAEYAYVLRVGGLVYT 166 (235)
T ss_dssp ------CCCTTEEEEECCTTTCHHHHCCTTCEEEEEEES-CC-----------CCCHHHHHHHHHHEEEEEEEEE
T ss_pred ------cCCCeEEEEECcHHHhhhhhCCCcCeeEEEEeC-CCchhhhhhhhhhhhhHHHHHHHHHHCCCCCEEEE
Confidence 001237889999876211001257899997654 332110 13689999999999999984
|
| >3id6_C Fibrillarin-like rRNA/TRNA 2'-O-methyltransferase; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus} SCOP: c.66.1.0 PDB: 3id5_B* 3pla_E* | Back alignment and structure |
|---|
Probab=99.14 E-value=8.1e-10 Score=104.24 Aligned_cols=166 Identities=17% Similarity=0.075 Sum_probs=96.3
Q ss_pred HhcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhh
Q 015966 156 VRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILN 232 (397)
Q Consensus 156 ~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn 232 (397)
+|.|..- |. .+-..|.+.+......++.+|||+|||+|.++..||++ .-.|+|+|+|..|+... ++
T Consensus 51 yr~w~~~----~s----kla~~ll~~l~~~~l~~g~~VLDlG~GtG~~t~~la~~v~~~G~V~avD~s~~~l~~l---~~ 119 (232)
T 3id6_C 51 YREWNAF----RS----KLAGAILKGLKTNPIRKGTKVLYLGAASGTTISHVSDIIELNGKAYGVEFSPRVVREL---LL 119 (232)
T ss_dssp EEECCTT----TC----HHHHHHHTTCSCCSCCTTCEEEEETCTTSHHHHHHHHHHTTTSEEEEEECCHHHHHHH---HH
T ss_pred hhhhchH----HH----HHHHHHHhhhhhcCCCCCCEEEEEeecCCHHHHHHHHHhCCCCEEEEEECcHHHHHHH---HH
Confidence 7888643 22 23344444443323347889999999999999999986 23899999999996321 11
Q ss_pred cccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhh
Q 015966 233 HTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN 312 (397)
Q Consensus 233 ~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N 312 (397)
.+.+. .++.++.+|.+.........+.||+|++..-. ++
T Consensus 120 ~a~~r--------------------------------------~nv~~i~~Da~~~~~~~~~~~~~D~I~~d~a~---~~ 158 (232)
T 3id6_C 120 VAQRR--------------------------------------PNIFPLLADARFPQSYKSVVENVDVLYVDIAQ---PD 158 (232)
T ss_dssp HHHHC--------------------------------------TTEEEEECCTTCGGGTTTTCCCEEEEEECCCC---TT
T ss_pred Hhhhc--------------------------------------CCeEEEEcccccchhhhccccceEEEEecCCC---hh
Confidence 11100 12566778876532111124689999875432 23
Q ss_pred HHH-HHHHHHHhccCCcEEEEecCCcchh-hhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeecCCCCCC
Q 015966 313 IVE-YIEIISRILKDGGVWINLGPLLYHF-ADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTT 382 (397)
Q Consensus 313 i~~-yi~~I~~~LKPGG~wIN~GPLlYh~-~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~~~Y~~ 382 (397)
..+ .++.+.+.|||||.+|-. .++- .+. ...+ -+.. ++....+++.||++++.... -+|..
T Consensus 159 ~~~il~~~~~~~LkpGG~lvis---ik~~~~d~-t~~~---~e~~-~~~~~~L~~~gf~~~~~~~l-~p~~~ 221 (232)
T 3id6_C 159 QTDIAIYNAKFFLKVNGDMLLV---IKARSIDV-TKDP---KEIY-KTEVEKLENSNFETIQIINL-DPYDK 221 (232)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEE---EC--------CCS---SSST-THHHHHHHHTTEEEEEEEEC-TTTCS
T ss_pred HHHHHHHHHHHhCCCCeEEEEE---EccCCccc-CCCH---HHHH-HHHHHHHHHCCCEEEEEecc-CCCcC
Confidence 333 345666699999999953 1211 110 1111 1223 34445666779999986543 34543
|
| >2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=99.14 E-value=1.9e-10 Score=103.24 Aligned_cols=110 Identities=18% Similarity=0.100 Sum_probs=79.2
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC---CeEEEEeCCHHHHHHHHhhhhcccccCcccccccccc
Q 015966 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 248 (397)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G---f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~ 248 (397)
+.++..+.+.+.. .++.+|||+|||+|.++..|++.+ ..|+|+|+|..|+..++-.+...
T Consensus 63 ~~~~~~~~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~-------------- 125 (215)
T 2yxe_A 63 IHMVGMMCELLDL---KPGMKVLEIGTGCGYHAAVTAEIVGEDGLVVSIERIPELAEKAERTLRKL-------------- 125 (215)
T ss_dssp HHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHHHHH--------------
T ss_pred HHHHHHHHHhhCC---CCCCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHc--------------
Confidence 4455666665542 256799999999999999999987 79999999999998776332110
Q ss_pred ccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCc
Q 015966 249 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGG 328 (397)
Q Consensus 249 ~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG 328 (397)
.+ .++.+..+|+.+... ..+.||+|+....+.... +.+.++|||||
T Consensus 126 --------------~~-----------~~v~~~~~d~~~~~~---~~~~fD~v~~~~~~~~~~------~~~~~~L~pgG 171 (215)
T 2yxe_A 126 --------------GY-----------DNVIVIVGDGTLGYE---PLAPYDRIYTTAAGPKIP------EPLIRQLKDGG 171 (215)
T ss_dssp --------------TC-----------TTEEEEESCGGGCCG---GGCCEEEEEESSBBSSCC------HHHHHTEEEEE
T ss_pred --------------CC-----------CCeEEEECCcccCCC---CCCCeeEEEECCchHHHH------HHHHHHcCCCc
Confidence 00 125677888754322 246899999876555432 48899999999
Q ss_pred EEEE
Q 015966 329 VWIN 332 (397)
Q Consensus 329 ~wIN 332 (397)
++|-
T Consensus 172 ~lv~ 175 (215)
T 2yxe_A 172 KLLM 175 (215)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9985
|
| >2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=99.13 E-value=1.2e-10 Score=106.51 Aligned_cols=103 Identities=13% Similarity=0.154 Sum_probs=77.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++..||+. |..|+|+|+|..|+..|+-.+...
T Consensus 54 ~~~~vLdiG~G~G~~~~~la~~~~~~~v~~vD~~~~~~~~a~~~~~~~-------------------------------- 101 (233)
T 2gpy_A 54 APARILEIGTAIGYSAIRMAQALPEATIVSIERDERRYEEAHKHVKAL-------------------------------- 101 (233)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHCTTCEEEEECCCHHHHHHHHHHHHHT--------------------------------
T ss_pred CCCEEEEecCCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc--------------------------------
Confidence 4569999999999999999998 689999999999998776332110
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
....++.+..+|+.+........+.||+|+...-.. +...+++.+.++|||||++|-
T Consensus 102 ------~~~~~v~~~~~d~~~~~~~~~~~~~fD~I~~~~~~~---~~~~~l~~~~~~L~pgG~lv~ 158 (233)
T 2gpy_A 102 ------GLESRIELLFGDALQLGEKLELYPLFDVLFIDAAKG---QYRRFFDMYSPMVRPGGLILS 158 (233)
T ss_dssp ------TCTTTEEEECSCGGGSHHHHTTSCCEEEEEEEGGGS---CHHHHHHHHGGGEEEEEEEEE
T ss_pred ------CCCCcEEEEECCHHHHHHhcccCCCccEEEECCCHH---HHHHHHHHHHHHcCCCeEEEE
Confidence 011236778888876421100136899998765443 567899999999999999985
|
| >2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A | Back alignment and structure |
|---|
Probab=99.13 E-value=4.4e-11 Score=104.61 Aligned_cols=120 Identities=13% Similarity=0.062 Sum_probs=84.7
Q ss_pred CCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 188 ESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 188 ~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
.++.+||++|||. | ++|+|..|+..|+-..
T Consensus 11 ~~g~~vL~~~~g~-------------v-~vD~s~~ml~~a~~~~------------------------------------ 40 (176)
T 2ld4_A 11 SAGQFVAVVWDKS-------------S-PVEALKGLVDKLQALT------------------------------------ 40 (176)
T ss_dssp CTTSEEEEEECTT-------------S-CHHHHHHHHHHHHHHT------------------------------------
T ss_pred CCCCEEEEecCCc-------------e-eeeCCHHHHHHHHHhc------------------------------------
Confidence 4678999999996 2 3899999998665110
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCCh-hhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCC
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA-HNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta-~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~ 346 (397)
..++.+..+|+.++...+..+++||+|++.+.+... .+....++.++++|||||+++-..|.. .. .+
T Consensus 41 -------~~~~~~~~~d~~~~~~~~~~~~~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~~~~~---~~-~~- 108 (176)
T 2ld4_A 41 -------GNEGRVSVENIKQLLQSAHKESSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLKEPVE---TA-VD- 108 (176)
T ss_dssp -------TTTSEEEEEEGGGGGGGCCCSSCEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEEEEEE---SS-SC-
T ss_pred -------ccCcEEEEechhcCccccCCCCCEeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEEcccc---cc-cc-
Confidence 001567788887652201135789999988766655 567899999999999999999644421 10 01
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 347 EDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 347 ~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
...+..+.+++.++++++|| +..
T Consensus 109 --~~~~~~~~~~~~~~l~~aGf-i~~ 131 (176)
T 2ld4_A 109 --NNSKVKTASKLCSALTLSGL-VEV 131 (176)
T ss_dssp --SSSSSCCHHHHHHHHHHTTC-EEE
T ss_pred --cccccCCHHHHHHHHHHCCC-cEe
Confidence 12345789999999999999 553
|
| >1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=1.9e-10 Score=113.21 Aligned_cols=146 Identities=16% Similarity=0.127 Sum_probs=96.6
Q ss_pred HHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCC
Q 015966 176 EELDALFPNRSKESPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (397)
Q Consensus 176 ~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~ 253 (397)
..|.+.++.. .+..+|||+|||+|+++..|++++ ..++++|+ ..|+..++
T Consensus 198 ~~l~~~~~~~--~~~~~vLDvG~G~G~~~~~l~~~~~~~~~~~~D~-~~~~~~a~------------------------- 249 (372)
T 1fp1_D 198 KRMLEIYTGF--EGISTLVDVGGGSGRNLELIISKYPLIKGINFDL-PQVIENAP------------------------- 249 (372)
T ss_dssp HHHHHHCCTT--TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC-------------------------
T ss_pred HHHHHHhhcc--CCCCEEEEeCCCCcHHHHHHHHHCCCCeEEEeCh-HHHHHhhh-------------------------
Confidence 4455555421 256799999999999999999986 45778899 88873211
Q ss_pred CcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCCh--hhHHHHHHHHHHhccCCcEEE
Q 015966 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta--~Ni~~yi~~I~~~LKPGG~wI 331 (397)
. . .++.++.+||.+- .| . ||+|+....+... +.....|+.++++|||||++|
T Consensus 250 -------~--~-----------~~v~~~~~d~~~~--~~---~-~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~pgG~l~ 303 (372)
T 1fp1_D 250 -------P--L-----------SGIEHVGGDMFAS--VP---Q-GDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGKVI 303 (372)
T ss_dssp -------C--C-----------TTEEEEECCTTTC--CC---C-EEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred -------h--c-----------CCCEEEeCCcccC--CC---C-CCEEEEecccccCCHHHHHHHHHHHHHhcCCCCEEE
Confidence 0 0 1267899999762 22 3 9999988765533 334599999999999999998
Q ss_pred Eec---CC-cc-------h-hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 332 NLG---PL-LY-------H-FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 332 N~G---PL-lY-------h-~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
-.. |- .. . ..+..-.......+.+.+|++++++++||++++...
T Consensus 304 i~e~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~t~~e~~~ll~~aGf~~~~~~~ 359 (372)
T 1fp1_D 304 IVEFILPEEPNTSEESKLVSTLDNLMFITVGGRERTEKQYEKLSKLSGFSKFQVAC 359 (372)
T ss_dssp EEEEEECSSCCSSHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCSEEEEEE
T ss_pred EEEeccCCCCccchHHHHHHHhhHHHHhccCCccCCHHHHHHHHHHCCCceEEEEE
Confidence 421 10 00 0 000000000002357999999999999999988553
|
| >1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A* | Back alignment and structure |
|---|
Probab=99.12 E-value=2.6e-10 Score=111.35 Aligned_cols=133 Identities=16% Similarity=0.137 Sum_probs=92.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
+..+|||+|||+|.++..|+++ +..++|+|+ ..|+..++ . .
T Consensus 188 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--------------------------------~--~-- 230 (352)
T 1fp2_A 188 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDR-PQVVENLS--------------------------------G--S-- 230 (352)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHTTCC--------------------------------C--B--
T ss_pred cCceEEEeCCCccHHHHHHHHHCCCCeEEEeeC-HHHHhhcc--------------------------------c--C--
Confidence 4579999999999999999987 678999999 88873211 0 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChh--hHHHHHHHHHHhccC---CcEEEEecCCc----
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH--NIVEYIEIISRILKD---GGVWINLGPLL---- 337 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~--Ni~~yi~~I~~~LKP---GG~wIN~GPLl---- 337 (397)
.++.+..+||.+- .| .||+|+....+.... .....++.++++||| ||++|-..+..
T Consensus 231 ---------~~v~~~~~d~~~~--~p----~~D~v~~~~~lh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~ 295 (352)
T 1fp2_A 231 ---------NNLTYVGGDMFTS--IP----NADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKK 295 (352)
T ss_dssp ---------TTEEEEECCTTTC--CC----CCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTT
T ss_pred ---------CCcEEEeccccCC--CC----CccEEEeehhhccCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeecCCCC
Confidence 1267899998762 22 399999876554333 345999999999999 99887432111
Q ss_pred -----chh---hhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 338 -----YHF---ADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 338 -----Yh~---~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
+.+ .+..-... ...+.+.+|++++++++||++++..
T Consensus 296 ~~~~~~~~~~~~d~~~~~~-~g~~~t~~e~~~ll~~aGf~~~~~~ 339 (352)
T 1fp2_A 296 DENQVTQIKLLMDVNMACL-NGKERNEEEWKKLFIEAGFQHYKIS 339 (352)
T ss_dssp SCHHHHHHHHHHHHHGGGG-TCCCEEHHHHHHHHHHTTCCEEEEE
T ss_pred CccchhhhHhhccHHHHhc-cCCCCCHHHHHHHHHHCCCCeeEEE
Confidence 000 00000000 0235789999999999999988754
|
| >1u2z_A Histone-lysine N-methyltransferase, H3 lysine-79 specific; histone methyltransferase, nucleosome; HET: SAH; 2.20A {Saccharomyces cerevisiae} SCOP: c.66.1.31 | Back alignment and structure |
|---|
Probab=99.12 E-value=2.4e-10 Score=117.07 Aligned_cols=129 Identities=14% Similarity=0.123 Sum_probs=84.8
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHHHHHHHhhhhcccccCcccccccccc
Q 015966 171 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 248 (397)
Q Consensus 171 y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~ 248 (397)
.+.++..+.+.+.. .++.+|||+|||+|+++..||++ |. .|+|+|+|..|+..|.-++..++....
T Consensus 227 ~p~~v~~ml~~l~l---~~g~~VLDLGCGsG~la~~LA~~~g~~~V~GVDis~~~l~~A~~Ml~~ar~~~~--------- 294 (433)
T 1u2z_A 227 LPNFLSDVYQQCQL---KKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKRCK--------- 294 (433)
T ss_dssp CHHHHHHHHHHTTC---CTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHHHH---------
T ss_pred cHHHHHHHHHhcCC---CCCCEEEEeCCCcCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHhHHHHHHHHH---------
Confidence 35566666666542 26789999999999999999996 65 699999999999888433332211000
Q ss_pred ccCCCCcccCccccccCCCCCCCCCCCCcceeEecc-cccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCC
Q 015966 249 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGD-FVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDG 327 (397)
Q Consensus 249 ~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GD-F~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPG 327 (397)
. .++. ..++.++.|| +.+....+...+.||+|+...++- .+++...|+.+.++||||
T Consensus 295 -------~---~Gl~-----------~~nV~~i~gD~~~~~~~~~~~~~~FDvIvvn~~l~-~~d~~~~L~el~r~LKpG 352 (433)
T 1u2z_A 295 -------L---YGMR-----------LNNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLF-DEDLNKKVEKILQTAKVG 352 (433)
T ss_dssp -------H---TTBC-----------CCCEEEEESSCSTTCHHHHHHGGGCSEEEECCTTC-CHHHHHHHHHHHTTCCTT
T ss_pred -------H---cCCC-----------CCceEEEEcCccccccccccccCCCCEEEEeCccc-cccHHHHHHHHHHhCCCC
Confidence 0 0000 0236677764 432100000136899999765442 367889999999999999
Q ss_pred cEEEEe
Q 015966 328 GVWINL 333 (397)
Q Consensus 328 G~wIN~ 333 (397)
|++|..
T Consensus 353 G~lVi~ 358 (433)
T 1u2z_A 353 CKIISL 358 (433)
T ss_dssp CEEEES
T ss_pred eEEEEe
Confidence 999963
|
| >3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP} | Back alignment and structure |
|---|
Probab=99.11 E-value=5.4e-10 Score=103.11 Aligned_cols=103 Identities=17% Similarity=0.115 Sum_probs=75.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+||++|||+|..+..||+. +..|+|+|+|..|+..|+-.+...
T Consensus 72 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~------------------------------- 120 (232)
T 3cbg_A 72 GAKQVLEIGVFRGYSALAMALQLPPDGQIIACDQDPNATAIAKKYWQKA------------------------------- 120 (232)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCHHHHHHHHHHHHHH-------------------------------
T ss_pred CCCEEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-------------------------------
Confidence 3569999999999999999987 679999999999998776332211
Q ss_pred CCCCCCCCCCCcceeEecccccccC-CCCCC--CCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYS-DPSQV--GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~-~~~~~--~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
....++.++.+|+.+... .+... ++||+|+... ...+...+++.+.++|||||++|-
T Consensus 121 -------g~~~~i~~~~~d~~~~l~~l~~~~~~~~fD~V~~d~---~~~~~~~~l~~~~~~LkpgG~lv~ 180 (232)
T 3cbg_A 121 -------GVAEKISLRLGPALATLEQLTQGKPLPEFDLIFIDA---DKRNYPRYYEIGLNLLRRGGLMVI 180 (232)
T ss_dssp -------TCGGGEEEEESCHHHHHHHHHTSSSCCCEEEEEECS---CGGGHHHHHHHHHHTEEEEEEEEE
T ss_pred -------CCCCcEEEEEcCHHHHHHHHHhcCCCCCcCEEEECC---CHHHHHHHHHHHHHHcCCCeEEEE
Confidence 001236778888765321 11112 6899997532 235678999999999999999994
|
| >3tm4_A TRNA (guanine N2-)-methyltransferase TRM14; rossmann fold, thump domain, tRNA methyltransferase; HET: SAM; 1.95A {Pyrococcus furiosus} PDB: 3tlj_A* 3tm5_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=7.7e-10 Score=109.94 Aligned_cols=125 Identities=14% Similarity=0.225 Sum_probs=90.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||||||+|.++.++|+.|. .|+|+|+|..|+..|+-.+...
T Consensus 217 ~~~~vLD~gCGsG~~~i~~a~~~~~~~v~g~Dis~~~l~~A~~n~~~~-------------------------------- 264 (373)
T 3tm4_A 217 DGGSVLDPMCGSGTILIELALRRYSGEIIGIEKYRKHLIGAEMNALAA-------------------------------- 264 (373)
T ss_dssp CSCCEEETTCTTCHHHHHHHHTTCCSCEEEEESCHHHHHHHHHHHHHT--------------------------------
T ss_pred CCCEEEEccCcCcHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHc--------------------------------
Confidence 567899999999999999999998 8999999999998887332110
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--ec--cC---ChhhH-HHHHHHHHHhccCCcEEEEecCCcc
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FF--ID---TAHNI-VEYIEIISRILKDGGVWINLGPLLY 338 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FF--ID---ta~Ni-~~yi~~I~~~LKPGG~wIN~GPLlY 338 (397)
....++.+..+|+.++.. ..++||+|++. |. +. ...++ .++++.+.++| +|+.++-
T Consensus 265 ------gl~~~i~~~~~D~~~~~~---~~~~fD~Ii~npPyg~r~~~~~~~~~ly~~~~~~l~r~l-~g~~~~i------ 328 (373)
T 3tm4_A 265 ------GVLDKIKFIQGDATQLSQ---YVDSVDFAISNLPYGLKIGKKSMIPDLYMKFFNELAKVL-EKRGVFI------ 328 (373)
T ss_dssp ------TCGGGCEEEECCGGGGGG---TCSCEEEEEEECCCC------CCHHHHHHHHHHHHHHHE-EEEEEEE------
T ss_pred ------CCCCceEEEECChhhCCc---ccCCcCEEEECCCCCcccCcchhHHHHHHHHHHHHHHHc-CCeEEEE------
Confidence 011237889999988642 24789999996 32 21 22333 56788999999 3333331
Q ss_pred hhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 339 HFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 339 h~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
.-+.+.+++++.+.||+..+...
T Consensus 329 --------------~~~~~~~~~~~~~~G~~~~~~~~ 351 (373)
T 3tm4_A 329 --------------TTEKKAIEEAIAENGFEIIHHRV 351 (373)
T ss_dssp --------------ESCHHHHHHHHHHTTEEEEEEEE
T ss_pred --------------ECCHHHHHHHHHHcCCEEEEEEE
Confidence 12567888899999999988653
|
| >1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=99.10 E-value=1.9e-10 Score=107.55 Aligned_cols=120 Identities=18% Similarity=0.096 Sum_probs=86.1
Q ss_pred hchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccc
Q 015966 169 QCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPW 245 (397)
Q Consensus 169 ~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPf 245 (397)
..|+..+..+.+.+.. .++.+|||+|||+|.++..|+++ +..|+|+|+|..|+..++..+.... .
T Consensus 82 ~~~~~~~~~i~~~~~~---~~~~~vLdiG~G~G~~~~~l~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~--g------- 149 (280)
T 1i9g_A 82 VIYPKDAAQIVHEGDI---FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGCY--G------- 149 (280)
T ss_dssp CCCHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHHH--T-------
T ss_pred eecHHHHHHHHHHcCC---CCCCEEEEEcccccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhc--C-------
Confidence 3566677777666542 25679999999999999999996 6899999999999987763221000 0
Q ss_pred cccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhcc
Q 015966 246 IHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILK 325 (397)
Q Consensus 246 i~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LK 325 (397)
....++.+..+|+.+.. ...+.||+|+... .+..++++.+.++||
T Consensus 150 ---------------------------~~~~~v~~~~~d~~~~~---~~~~~~D~v~~~~-----~~~~~~l~~~~~~L~ 194 (280)
T 1i9g_A 150 ---------------------------QPPDNWRLVVSDLADSE---LPDGSVDRAVLDM-----LAPWEVLDAVSRLLV 194 (280)
T ss_dssp ---------------------------SCCTTEEEECSCGGGCC---CCTTCEEEEEEES-----SCGGGGHHHHHHHEE
T ss_pred ---------------------------CCCCcEEEEECchHhcC---CCCCceeEEEECC-----cCHHHHHHHHHHhCC
Confidence 00113677889987752 1247899998732 234478999999999
Q ss_pred CCcEEEEecC
Q 015966 326 DGGVWINLGP 335 (397)
Q Consensus 326 PGG~wIN~GP 335 (397)
|||+++-..|
T Consensus 195 pgG~l~~~~~ 204 (280)
T 1i9g_A 195 AGGVLMVYVA 204 (280)
T ss_dssp EEEEEEEEES
T ss_pred CCCEEEEEeC
Confidence 9999996443
|
| >3b3j_A Histone-arginine methyltransferase CARM1; protein arginine methyltransferase 4, APO catalytic domain, regulator, mRNA processing; 2.55A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=99.10 E-value=1.6e-10 Score=119.27 Aligned_cols=100 Identities=18% Similarity=0.173 Sum_probs=75.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|.++..+|++|. .|+|+|+|. |+..|+-.+...
T Consensus 158 ~~~~VLDiGcGtG~la~~la~~~~~~V~gvD~s~-~l~~A~~~~~~~--------------------------------- 203 (480)
T 3b3j_A 158 KDKIVLDVGCGSGILSFFAAQAGARKIYAVEAST-MAQHAEVLVKSN--------------------------------- 203 (480)
T ss_dssp TTCEEEEESCSTTHHHHHHHHTTCSEEEEEECHH-HHHHHHHHHHHT---------------------------------
T ss_pred CCCEEEEecCcccHHHHHHHHcCCCEEEEEEcHH-HHHHHHHHHHHc---------------------------------
Confidence 567999999999999999999986 899999998 987766332110
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee--ccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF--FIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F--FIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
....++.++.+|+.++.. .++||+|++.. +....++..+.+..+.++|||||++|
T Consensus 204 -----gl~~~v~~~~~d~~~~~~----~~~fD~Ivs~~~~~~~~~e~~~~~l~~~~~~LkpgG~li 260 (480)
T 3b3j_A 204 -----NLTDRIVVIPGKVEEVSL----PEQVDIIISEPMGYMLFNERMLESYLHAKKYLKPSGNMF 260 (480)
T ss_dssp -----TCTTTEEEEESCTTTCCC----SSCEEEEECCCCHHHHTCHHHHHHHHHGGGGEEEEEEEE
T ss_pred -----CCCCcEEEEECchhhCcc----CCCeEEEEEeCchHhcCcHHHHHHHHHHHHhcCCCCEEE
Confidence 011347889999987521 36899999853 22223456778888999999999998
|
| >4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.8e-09 Score=104.94 Aligned_cols=140 Identities=19% Similarity=0.105 Sum_probs=96.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
...+|||+|||+|.++..|+++. -.++..|+ +.|+..++-.+..
T Consensus 179 ~~~~v~DvGgG~G~~~~~l~~~~p~~~~~~~dl-p~v~~~a~~~~~~--------------------------------- 224 (353)
T 4a6d_A 179 VFPLMCDLGGGAGALAKECMSLYPGCKITVFDI-PEVVWTAKQHFSF--------------------------------- 224 (353)
T ss_dssp GCSEEEEETCTTSHHHHHHHHHCSSCEEEEEEC-HHHHHHHHHHSCC---------------------------------
T ss_pred cCCeEEeeCCCCCHHHHHHHHhCCCceeEeccC-HHHHHHHHHhhhh---------------------------------
Confidence 45699999999999999999994 45677777 6787766522100
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCCcEEEEecCCc-------
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLL------- 337 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPGG~wIN~GPLl------- 337 (397)
...++++++.|||.+.. ...+|+|+....|. ..+.....|+.+++.|||||.+|-+-+++
T Consensus 225 ------~~~~rv~~~~gD~~~~~-----~~~~D~~~~~~vlh~~~d~~~~~iL~~~~~al~pgg~lli~e~~~~~~~~~~ 293 (353)
T 4a6d_A 225 ------QEEEQIDFQEGDFFKDP-----LPEADLYILARVLHDWADGKCSHLLERIYHTCKPGGGILVIESLLDEDRRGP 293 (353)
T ss_dssp --------CCSEEEEESCTTTSC-----CCCCSEEEEESSGGGSCHHHHHHHHHHHHHHCCTTCEEEEEECCCCTTSCCC
T ss_pred ------cccCceeeecCccccCC-----CCCceEEEeeeecccCCHHHHHHHHHHHHhhCCCCCEEEEEEeeeCCCCCCC
Confidence 01235899999997631 23579998876654 34456789999999999999888533221
Q ss_pred --chhhhc--cCCCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 338 --YHFADL--YGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 338 --Yh~~d~--~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
-.+-+. .-.. ..-+.|.+|++++++++||++++...
T Consensus 294 ~~~~~~dl~ml~~~--~g~ert~~e~~~ll~~AGf~~v~v~~ 333 (353)
T 4a6d_A 294 LLTQLYSLNMLVQT--EGQERTPTHYHMLLSSAGFRDFQFKK 333 (353)
T ss_dssp HHHHHHHHHHHHSS--SCCCCCHHHHHHHHHHHTCEEEEEEC
T ss_pred HHHHHHHHHHHHhC--CCcCCCHHHHHHHHHHCCCceEEEEE
Confidence 000010 0000 13467999999999999999988653
|
| >1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=2.4e-10 Score=107.24 Aligned_cols=112 Identities=15% Similarity=0.128 Sum_probs=80.9
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccccc
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~S 250 (397)
++..|.... +..+||++|||+|..+..||+. |..|+|+|+|..|+..|+-.+...
T Consensus 70 ll~~l~~~~------~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~s~~~~~~a~~~~~~~---------------- 127 (247)
T 1sui_A 70 FLSMLLKLI------NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA---------------- 127 (247)
T ss_dssp HHHHHHHHT------TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHhh------CcCEEEEeCCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc----------------
Confidence 555555543 3469999999999999999987 789999999999998777332210
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCC-CC---CCCCccEEEEeeccCChhhHHHHHHHHHHhccC
Q 015966 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD-PS---QVGAWDAVVTCFFIDTAHNIVEYIEIISRILKD 326 (397)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~-~~---~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKP 326 (397)
....++.++.||..++... .. ..++||+|+.... ..+...|++.+.++|||
T Consensus 128 ----------------------g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~V~~d~~---~~~~~~~l~~~~~~Lkp 182 (247)
T 1sui_A 128 ----------------------GVDHKIDFREGPALPVLDEMIKDEKNHGSYDFIFVDAD---KDNYLNYHKRLIDLVKV 182 (247)
T ss_dssp ----------------------TCGGGEEEEESCHHHHHHHHHHSGGGTTCBSEEEECSC---STTHHHHHHHHHHHBCT
T ss_pred ----------------------CCCCCeEEEECCHHHHHHHHHhccCCCCCEEEEEEcCc---hHHHHHHHHHHHHhCCC
Confidence 0112377888998764210 00 1478999975422 34577999999999999
Q ss_pred CcEEEE
Q 015966 327 GGVWIN 332 (397)
Q Consensus 327 GG~wIN 332 (397)
||++|-
T Consensus 183 GG~lv~ 188 (247)
T 1sui_A 183 GGVIGY 188 (247)
T ss_dssp TCCEEE
T ss_pred CeEEEE
Confidence 999983
|
| >3r3h_A O-methyltransferase, SAM-dependent; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.65A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.09 E-value=7.4e-11 Score=110.39 Aligned_cols=103 Identities=12% Similarity=0.037 Sum_probs=75.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
+..+|||+|||+|..+..||+. |..|+|+|+|..|+..|+-.+...
T Consensus 60 ~~~~VLDiG~G~G~~t~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~------------------------------- 108 (242)
T 3r3h_A 60 RAKKVLELGTFTGYSALAMSLALPDDGQVITCDINEGWTKHAHPYWREA------------------------------- 108 (242)
T ss_dssp TCSEEEEEESCCSHHHHHHHHTSCTTCEEEEEECCCSSCCCSHHHHHHT-------------------------------
T ss_pred CcCEEEEeeCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-------------------------------
Confidence 3569999999999999999984 689999999999986554222110
Q ss_pred CCCCCCCCCCCcceeEecccccccCCC-C--CCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDP-S--QVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~-~--~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
....++.++.||+.++.... . ..++||+|+... ...+...|++.+.++|||||++|-
T Consensus 109 -------g~~~~i~~~~gda~~~l~~~~~~~~~~~fD~V~~d~---~~~~~~~~l~~~~~~LkpGG~lv~ 168 (242)
T 3r3h_A 109 -------KQEHKIKLRLGPALDTLHSLLNEGGEHQFDFIFIDA---DKTNYLNYYELALKLVTPKGLIAI 168 (242)
T ss_dssp -------TCTTTEEEEESCHHHHHHHHHHHHCSSCEEEEEEES---CGGGHHHHHHHHHHHEEEEEEEEE
T ss_pred -------CCCCcEEEEEcCHHHHHHHHhhccCCCCEeEEEEcC---ChHHhHHHHHHHHHhcCCCeEEEE
Confidence 11234788999987753200 0 037899997543 245678899999999999999994
|
| >3gnl_A Uncharacterized protein, DUF633, LMOF2365_1472; structural genomics, PSI-2, protein structure initiative; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=99.09 E-value=1.3e-09 Score=104.03 Aligned_cols=134 Identities=14% Similarity=0.055 Sum_probs=99.4
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 175 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 175 l~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
|+.|.+.++ ++.+|||+|||+|.++..||+.|- .|+|+|++..|+..|+--+.. +
T Consensus 12 L~~i~~~v~-----~g~~VlDIGtGsG~l~i~la~~~~~~~V~avDi~~~al~~A~~N~~~----~-------------- 68 (244)
T 3gnl_A 12 LEKVASYIT-----KNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRS----S-------------- 68 (244)
T ss_dssp HHHHHTTCC-----SSEEEEEETCSTTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHH----T--------------
T ss_pred HHHHHHhCC-----CCCEEEEECCccHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHH----c--------------
Confidence 455666654 567999999999999999999985 699999999999988732210 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
...+.+.+..||..+... ..+.||+|+.+=-. +.-|.+.++.....|+++|.+|-
T Consensus 69 --------------------gl~~~I~v~~gD~l~~~~---~~~~~D~IviagmG--g~lI~~IL~~~~~~L~~~~~lIl 123 (244)
T 3gnl_A 69 --------------------GLTEQIDVRKGNGLAVIE---KKDAIDTIVIAGMG--GTLIRTILEEGAAKLAGVTKLIL 123 (244)
T ss_dssp --------------------TCTTTEEEEECSGGGGCC---GGGCCCEEEEEEEC--HHHHHHHHHHTGGGGTTCCEEEE
T ss_pred --------------------CCCceEEEEecchhhccC---ccccccEEEEeCCc--hHHHHHHHHHHHHHhCCCCEEEE
Confidence 111237889999887543 12369999864321 23477889999999999999994
Q ss_pred ecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 333 LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 333 ~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
.|. ...+.+++.+.+.||.+++|.
T Consensus 124 -q~~-----------------~~~~~lr~~L~~~Gf~i~~E~ 147 (244)
T 3gnl_A 124 -QPN-----------------IAAWQLREWSEQNNWLITSEA 147 (244)
T ss_dssp -EES-----------------SCHHHHHHHHHHHTEEEEEEE
T ss_pred -EcC-----------------CChHHHHHHHHHCCCEEEEEE
Confidence 221 257899999999999998865
|
| >2wa2_A Non-structural protein 5; transferase, S-adenosyl-L- methionine, virion, membrane, flavivirus, N7-methyltransferase, 2'-O-methyltransferase; HET: SAM; 1.80A {Modoc virus} PDB: 2wa1_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=7.7e-11 Score=113.43 Aligned_cols=100 Identities=11% Similarity=-0.019 Sum_probs=68.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|.++..+|++ ..|+|+|+|+ |+..++ +. + .+.
T Consensus 82 ~g~~VLDlGcGtG~~s~~la~~-~~V~gVD~s~-m~~~a~-------~~-----------------------~--~~~-- 125 (276)
T 2wa2_A 82 LKGTVVDLGCGRGSWSYYAASQ-PNVREVKAYT-LGTSGH-------EK-----------------------P--RLV-- 125 (276)
T ss_dssp CCEEEEEESCTTCHHHHHHHTS-TTEEEEEEEC-CCCTTS-------CC-----------------------C--CCC--
T ss_pred CCCEEEEeccCCCHHHHHHHHc-CCEEEEECch-hhhhhh-------hc-----------------------h--hhh--
Confidence 5779999999999999999999 6899999999 742110 00 0 000
Q ss_pred CCCCCCCCcceeE--ecccccccCCCCCCCCccEEEEeec-cCChh--h---HHHHHHHHHHhccCCc--EEEE
Q 015966 269 PASAGITEGFSMC--GGDFVEVYSDPSQVGAWDAVVTCFF-IDTAH--N---IVEYIEIISRILKDGG--VWIN 332 (397)
Q Consensus 269 p~~~~~~~~ls~~--~GDF~ely~~~~~~~~fD~VvT~FF-IDta~--N---i~~yi~~I~~~LKPGG--~wIN 332 (397)
...+.++.++ .+|+.++. .++||+|++.+- +.... + ....|+.+.++||||| .||-
T Consensus 126 ---~~~~~~v~~~~~~~D~~~l~-----~~~fD~Vvsd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~~v~ 191 (276)
T 2wa2_A 126 ---ETFGWNLITFKSKVDVTKME-----PFQADTVLCDIGESNPTAAVEASRTLTVLNVISRWLEYNQGCGFCV 191 (276)
T ss_dssp ---CCTTGGGEEEECSCCGGGCC-----CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHSTTCEEEE
T ss_pred ---hhcCCCeEEEeccCcHhhCC-----CCCcCEEEECCCcCCCchhhhHHHHHHHHHHHHHHhccCCCcEEEE
Confidence 0011247788 89988752 478999998642 21111 1 1237899999999999 8884
|
| >2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=5.5e-10 Score=101.18 Aligned_cols=104 Identities=16% Similarity=0.076 Sum_probs=76.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|..+..||+. +..|+|+|+|..|+..++-.+...
T Consensus 69 ~~~~vLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------------------------------- 117 (229)
T 2avd_A 69 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQA------------------------------- 117 (229)
T ss_dssp TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHT-------------------------------
T ss_pred CCCEEEEEcCCccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHC-------------------------------
Confidence 4569999999999999999986 679999999999998776433210
Q ss_pred CCCCCCCCCCCcceeEecccccccC-CCCC--CCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYS-DPSQ--VGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL 333 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~-~~~~--~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~ 333 (397)
....++.++.+|+.+... .+.. .++||+|+...- ..+...+++.+.++|||||++|-.
T Consensus 118 -------g~~~~i~~~~~d~~~~~~~~~~~~~~~~~D~v~~d~~---~~~~~~~l~~~~~~L~pgG~lv~~ 178 (229)
T 2avd_A 118 -------EAEHKIDLRLKPALETLDELLAAGEAGTFDVAVVDAD---KENCSAYYERCLQLLRPGGILAVL 178 (229)
T ss_dssp -------TCTTTEEEEESCHHHHHHHHHHTTCTTCEEEEEECSC---STTHHHHHHHHHHHEEEEEEEEEE
T ss_pred -------CCCCeEEEEEcCHHHHHHHHHhcCCCCCccEEEECCC---HHHHHHHHHHHHHHcCCCeEEEEE
Confidence 011237788898866421 0001 168999976322 345678999999999999999953
|
| >1nv8_A HEMK protein; class I adoMet-dependent methyltransferase; HET: SAM MEQ; 2.20A {Thermotoga maritima} SCOP: c.66.1.30 PDB: 1nv9_A* 1vq1_A* 1sg9_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=4.2e-10 Score=108.06 Aligned_cols=101 Identities=12% Similarity=0.266 Sum_probs=75.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|.++..||+. +..|+|+|+|..|+..|+......
T Consensus 123 ~~~~vLDlG~GsG~~~~~la~~~~~~v~~vDis~~al~~A~~n~~~~--------------------------------- 169 (284)
T 1nv8_A 123 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAERH--------------------------------- 169 (284)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHHT---------------------------------
T ss_pred CCCEEEEEeCchhHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHc---------------------------------
Confidence 3468999999999999999999 889999999999998887332110
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCc---cEEEEee-ccCCh------------------hhHHHHHHHHH-Hhc
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAW---DAVVTCF-FIDTA------------------HNIVEYIEIIS-RIL 324 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~f---D~VvT~F-FIDta------------------~Ni~~yi~~I~-~~L 324 (397)
....++.++.+|+.+... ++| |+|+++- |+... .+-.++++.|. +.|
T Consensus 170 -----~l~~~v~~~~~D~~~~~~-----~~f~~~D~IvsnPPyi~~~~~l~~~v~~ep~~al~~~~dgl~~~~~i~~~~l 239 (284)
T 1nv8_A 170 -----GVSDRFFVRKGEFLEPFK-----EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYD 239 (284)
T ss_dssp -----TCTTSEEEEESSTTGGGG-----GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCC
T ss_pred -----CCCCceEEEECcchhhcc-----cccCCCCEEEEcCCCCCcccccChhhccCcHHHhcCCCcHHHHHHHHHHhcC
Confidence 011237889999887432 478 9999872 33211 11237899999 999
Q ss_pred cCCcEEEE
Q 015966 325 KDGGVWIN 332 (397)
Q Consensus 325 KPGG~wIN 332 (397)
||||+++-
T Consensus 240 ~pgG~l~~ 247 (284)
T 1nv8_A 240 TSGKIVLM 247 (284)
T ss_dssp CTTCEEEE
T ss_pred CCCCEEEE
Confidence 99999983
|
| >2plw_A Ribosomal RNA methyltransferase, putative; malaria, SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.08 E-value=1.9e-10 Score=101.96 Aligned_cols=48 Identities=13% Similarity=-0.106 Sum_probs=36.3
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc----CCeEEEEeCCH
Q 015966 171 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL----GFISQGNEFSY 221 (397)
Q Consensus 171 y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~----Gf~V~GnD~S~ 221 (397)
.-.+++.+.++ ... .++.+|||+|||+|.++..|+++ +..|+|+|+|.
T Consensus 7 ~~kl~~~~~~~-~~~--~~~~~vLDlGcG~G~~~~~l~~~~~~~~~~v~gvD~s~ 58 (201)
T 2plw_A 7 AYKLIELDNKY-LFL--KKNKIILDIGCYPGSWCQVILERTKNYKNKIIGIDKKI 58 (201)
T ss_dssp HHHHHHHHHHH-CCC--CTTEEEEEESCTTCHHHHHHHHHTTTSCEEEEEEESSC
T ss_pred HHHHHHHHHHc-CCC--CCCCEEEEeCCCCCHHHHHHHHHcCCCCceEEEEeCCc
Confidence 33466655543 211 25679999999999999999987 47899999998
|
| >2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.08 E-value=2.1e-10 Score=105.58 Aligned_cols=103 Identities=16% Similarity=0.091 Sum_probs=75.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|.++..||++ +..|+|+|+|..|+..|+-.+...
T Consensus 60 ~~~~VLdiG~G~G~~~~~la~~~~~~~~v~~vD~~~~~~~~a~~~~~~~------------------------------- 108 (239)
T 2hnk_A 60 GAKRIIEIGTFTGYSSLCFASALPEDGKILCCDVSEEWTNVARKYWKEN------------------------------- 108 (239)
T ss_dssp TCSEEEEECCTTCHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT-------------------------------
T ss_pred CcCEEEEEeCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc-------------------------------
Confidence 4569999999999999999998 679999999999998776433210
Q ss_pred CCCCCCCCCCCcceeEecccccccC-C-----------CCCC--CCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYS-D-----------PSQV--GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~-~-----------~~~~--~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
....++.+..+|+.+... . .... +.||+|+... ...++..+++.+.++|||||++|
T Consensus 109 -------g~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~f~~~~~~fD~I~~~~---~~~~~~~~l~~~~~~L~pgG~lv 178 (239)
T 2hnk_A 109 -------GLENKIFLKLGSALETLQVLIDSKSAPSWASDFAFGPSSIDLFFLDA---DKENYPNYYPLILKLLKPGGLLI 178 (239)
T ss_dssp -------TCGGGEEEEESCHHHHHHHHHHCSSCCGGGTTTCCSTTCEEEEEECS---CGGGHHHHHHHHHHHEEEEEEEE
T ss_pred -------CCCCCEEEEECCHHHHHHHHHhhcccccccccccCCCCCcCEEEEeC---CHHHHHHHHHHHHHHcCCCeEEE
Confidence 001125677777765311 0 0111 6899998753 34567799999999999999999
Q ss_pred E
Q 015966 332 N 332 (397)
Q Consensus 332 N 332 (397)
-
T Consensus 179 ~ 179 (239)
T 2hnk_A 179 A 179 (239)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1dl5_A Protein-L-isoaspartate O-methyltransferase; isoaspartyl residues, protein repair, deamidation, post-translational modification; HET: SAH; 1.80A {Thermotoga maritima} SCOP: c.66.1.7 d.197.1.1 | Back alignment and structure |
|---|
Probab=99.08 E-value=4.5e-10 Score=108.61 Aligned_cols=113 Identities=18% Similarity=0.107 Sum_probs=80.9
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe---EEEEeCCHHHHHHHHhhhhcccccCccccccccccc
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI---SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~---V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~ 249 (397)
.+++.+.+.+.. .++.+|||+|||+|.++..||++|.. |+|+|+|..|+..++-.+...
T Consensus 62 ~~~~~l~~~l~~---~~~~~VLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~--------------- 123 (317)
T 1dl5_A 62 SLMALFMEWVGL---DKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERL--------------- 123 (317)
T ss_dssp HHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHT---------------
T ss_pred HHHHHHHHhcCC---CCcCEEEEecCCchHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHc---------------
Confidence 455555555532 25779999999999999999999876 999999999998776322110
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcE
Q 015966 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGV 329 (397)
Q Consensus 250 Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~ 329 (397)
+ . .++.+..+|+.+... ..+.||+|++..-+.... +.+.++|||||+
T Consensus 124 -----------g------------~-~~v~~~~~d~~~~~~---~~~~fD~Iv~~~~~~~~~------~~~~~~LkpgG~ 170 (317)
T 1dl5_A 124 -----------G------------I-ENVIFVCGDGYYGVP---EFSPYDVIFVTVGVDEVP------ETWFTQLKEGGR 170 (317)
T ss_dssp -----------T------------C-CSEEEEESCGGGCCG---GGCCEEEEEECSBBSCCC------HHHHHHEEEEEE
T ss_pred -----------C------------C-CCeEEEECChhhccc---cCCCeEEEEEcCCHHHHH------HHHHHhcCCCcE
Confidence 0 0 126778899877432 247899999886554332 578899999999
Q ss_pred EEE-ecCC
Q 015966 330 WIN-LGPL 336 (397)
Q Consensus 330 wIN-~GPL 336 (397)
++- ++|.
T Consensus 171 lvi~~~~~ 178 (317)
T 1dl5_A 171 VIVPINLK 178 (317)
T ss_dssp EEEEBCBG
T ss_pred EEEEECCC
Confidence 985 4443
|
| >2bm8_A Cephalosporin hydroxylase CMCI; cephamycin biosynthesis; 2.5A {Streptomyces clavuligerus} SCOP: c.66.1.50 PDB: 2bm9_A* 2br5_A* 2br4_A* 2br3_A* | Back alignment and structure |
|---|
Probab=99.07 E-value=1e-10 Score=109.00 Aligned_cols=123 Identities=11% Similarity=0.067 Sum_probs=85.4
Q ss_pred CCeEEEecCCCChhHHHHHHc------CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccc
Q 015966 190 PPACLVPGAGLGRLALEISHL------GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVS 263 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~------Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~ 263 (397)
+.+|||+|||+|..+..||++ +..|+|+|+|..|+..|+ ..
T Consensus 82 ~~~VLDiG~GtG~~t~~la~~~~~~~~~~~V~gvD~s~~~l~~a~--------------------------------~~- 128 (236)
T 2bm8_A 82 PRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDLSRCQIPA--------------------------------SD- 128 (236)
T ss_dssp CSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCCTTCCCCG--------------------------------GG-
T ss_pred CCEEEEEeCCCCHHHHHHHHhhhhcCCCCEEEEEeCChHHHHHHh--------------------------------cc-
Confidence 469999999999999999997 789999999999963221 00
Q ss_pred cCCCCCCCCCCCCcceeEecccccc--cCCCCCCCCccEEEEeeccCChhhHHHHHHHHHH-hccCCcEEEEecCCcchh
Q 015966 264 IPDIHPASAGITEGFSMCGGDFVEV--YSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISR-ILKDGGVWINLGPLLYHF 340 (397)
Q Consensus 264 iPDv~p~~~~~~~~ls~~~GDF~el--y~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~-~LKPGG~wIN~GPLlYh~ 340 (397)
..++.++.||+.+. ... .....||+|+.... . .++..+++.+++ +|||||++|-... .++
T Consensus 129 -----------~~~v~~~~gD~~~~~~l~~-~~~~~fD~I~~d~~-~--~~~~~~l~~~~r~~LkpGG~lv~~d~--~~~ 191 (236)
T 2bm8_A 129 -----------MENITLHQGDCSDLTTFEH-LREMAHPLIFIDNA-H--ANTFNIMKWAVDHLLEEGDYFIIEDM--IPY 191 (236)
T ss_dssp -----------CTTEEEEECCSSCSGGGGG-GSSSCSSEEEEESS-C--SSHHHHHHHHHHHTCCTTCEEEECSC--HHH
T ss_pred -----------CCceEEEECcchhHHHHHh-hccCCCCEEEECCc-h--HhHHHHHHHHHHhhCCCCCEEEEEeC--ccc
Confidence 02377889998774 111 01237999885432 1 257789999997 9999999995211 111
Q ss_pred hhccCCCCCccccCCHHHHHHHHHhC--CCEEEE
Q 015966 341 ADLYGQEDEMSIELSLEDVKRVALHY--GFEFEK 372 (397)
Q Consensus 341 ~d~~g~~~~~~ieLS~EEl~~ll~~~--GFeii~ 372 (397)
. .....+++.++++.. +|++..
T Consensus 192 ~----------~~~~~~~~~~~l~~~~~~f~~~~ 215 (236)
T 2bm8_A 192 W----------YRYAPQLFSEYLGAFRDVLSMDM 215 (236)
T ss_dssp H----------HHHCHHHHHHHHHTTTTTEEEET
T ss_pred c----------cccCHHHHHHHHHhCcccEEEcc
Confidence 1 112345888888877 788753
|
| >2vdv_E TRNA (guanine-N(7)-)-methyltransferase; S-adenosyl-L-methionine, phosphorylation, M7G, spout MT, tRNA processing; HET: SAM; 2.30A {Saccharomyces cerevisiae} PDB: 2vdu_E | Back alignment and structure |
|---|
Probab=99.07 E-value=5.4e-10 Score=103.66 Aligned_cols=112 Identities=15% Similarity=0.180 Sum_probs=75.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++..+|++| ..|+|+|+|..|+..++-.+......+. . ...
T Consensus 49 ~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~l~~a~~~~~~~~~~~~-----------------~---~~~--- 105 (246)
T 2vdv_E 49 KKVTIADIGCGFGGLMIDLSPAFPEDLILGMEIRVQVTNYVEDRIIALRNNTA-----------------S---KHG--- 105 (246)
T ss_dssp CCEEEEEETCTTSHHHHHHHHHSTTSEEEEEESCHHHHHHHHHHHHHHHHTC------------------C---CST---
T ss_pred CCCEEEEEcCCCCHHHHHHHHhCCCCCEEEEEcCHHHHHHHHHHHHHHhhccc-----------------c---ccC---
Confidence 56799999999999999999996 4799999999999877633221100000 0 000
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhh---------HHHHHHHHHHhccCCcEEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN---------IVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N---------i~~yi~~I~~~LKPGG~wIN 332 (397)
..++.++.+|+.+........+.+|.|+.+| -|.... -.++++.+.++|||||+++-
T Consensus 106 --------~~nv~~~~~D~~~~l~~~~~~~~~d~v~~~~-p~p~~k~~~~~~r~~~~~~l~~~~~~LkpgG~l~~ 171 (246)
T 2vdv_E 106 --------FQNINVLRGNAMKFLPNFFEKGQLSKMFFCF-PDPHFKQRKHKARIITNTLLSEYAYVLKEGGVVYT 171 (246)
T ss_dssp --------TTTEEEEECCTTSCGGGTSCTTCEEEEEEES-CCCC------CSSCCCHHHHHHHHHHEEEEEEEEE
T ss_pred --------CCcEEEEeccHHHHHHHhccccccCEEEEEC-CCcccccchhHHhhccHHHHHHHHHHcCCCCEEEE
Confidence 0237788899876322112357899998553 232100 03789999999999999985
|
| >3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum} | Back alignment and structure |
|---|
Probab=99.06 E-value=5.4e-10 Score=103.74 Aligned_cols=113 Identities=13% Similarity=0.104 Sum_probs=81.6
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccc
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~ 249 (397)
.++..|.... +..+||++|||+|..+..||+. |..|+++|+|..|+..|+-.+...
T Consensus 60 ~~l~~l~~~~------~~~~VLeiG~G~G~~~~~la~~~~~~~~v~~iD~~~~~~~~a~~~~~~~--------------- 118 (237)
T 3c3y_A 60 QLMSFVLKLV------NAKKTIEVGVFTGYSLLLTALSIPDDGKITAIDFDREAYEIGLPFIRKA--------------- 118 (237)
T ss_dssp HHHHHHHHHT------TCCEEEEECCTTSHHHHHHHHHSCTTCEEEEEESCHHHHHHHHHHHHHT---------------
T ss_pred HHHHHHHHhh------CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc---------------
Confidence 3566655543 3569999999999999999987 789999999999998777333211
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccC-CCC---CCCCccEEEEeeccCChhhHHHHHHHHHHhcc
Q 015966 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS-DPS---QVGAWDAVVTCFFIDTAHNIVEYIEIISRILK 325 (397)
Q Consensus 250 Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~-~~~---~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LK 325 (397)
....++.++.||..++.. .+. ..++||+|+... ...+...|++.+.++||
T Consensus 119 -----------------------g~~~~i~~~~gda~~~l~~l~~~~~~~~~fD~I~~d~---~~~~~~~~l~~~~~~L~ 172 (237)
T 3c3y_A 119 -----------------------GVEHKINFIESDAMLALDNLLQGQESEGSYDFGFVDA---DKPNYIKYHERLMKLVK 172 (237)
T ss_dssp -----------------------TCGGGEEEEESCHHHHHHHHHHSTTCTTCEEEEEECS---CGGGHHHHHHHHHHHEE
T ss_pred -----------------------CCCCcEEEEEcCHHHHHHHHHhccCCCCCcCEEEECC---chHHHHHHHHHHHHhcC
Confidence 011237788899876421 000 147899997531 23567899999999999
Q ss_pred CCcEEEE
Q 015966 326 DGGVWIN 332 (397)
Q Consensus 326 PGG~wIN 332 (397)
|||++|-
T Consensus 173 pGG~lv~ 179 (237)
T 3c3y_A 173 VGGIVAY 179 (237)
T ss_dssp EEEEEEE
T ss_pred CCeEEEE
Confidence 9999984
|
| >2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.05 E-value=2.9e-10 Score=103.06 Aligned_cols=101 Identities=17% Similarity=0.156 Sum_probs=73.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-------eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccc
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-------ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRP 261 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-------~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~ 261 (397)
++.+|||+|||+|.++..|++++. .|+|+|+|..|+..++-.+... . .. .
T Consensus 80 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~---~-~~-------------------~ 136 (227)
T 2pbf_A 80 PGSRAIDVGSGSGYLTVCMAIKMNVLENKNSYVIGLERVKDLVNFSLENIKRD---K-PE-------------------L 136 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHTTTTTCTTCEEEEEESCHHHHHHHHHHHHHH---C-GG-------------------G
T ss_pred CCCEEEEECCCCCHHHHHHHHHhcccCCCCCEEEEEeCCHHHHHHHHHHHHHc---C-cc-------------------c
Confidence 567999999999999999999865 9999999999998776432210 0 00 0
Q ss_pred cccCCCCCCCCCCCCcceeEeccccccc----CCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 262 VSIPDIHPASAGITEGFSMCGGDFVEVY----SDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 262 v~iPDv~p~~~~~~~~ls~~~GDF~ely----~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
+. ..++.+..+|+.+.. . ..+.||+|+....+.. +++.+.++|||||++|-
T Consensus 137 ~~-----------~~~v~~~~~d~~~~~~~~~~---~~~~fD~I~~~~~~~~------~~~~~~~~LkpgG~lv~ 191 (227)
T 2pbf_A 137 LK-----------IDNFKIIHKNIYQVNEEEKK---ELGLFDAIHVGASASE------LPEILVDLLAENGKLII 191 (227)
T ss_dssp GS-----------STTEEEEECCGGGCCHHHHH---HHCCEEEEEECSBBSS------CCHHHHHHEEEEEEEEE
T ss_pred cc-----------cCCEEEEECChHhcccccCc---cCCCcCEEEECCchHH------HHHHHHHhcCCCcEEEE
Confidence 00 123678889987642 1 2468999987655442 35888999999999984
|
| >1af7_A Chemotaxis receptor methyltransferase CHER; chemotaxis receptor methylation; HET: SAH; 2.00A {Salmonella typhimurium} SCOP: a.58.1.1 c.66.1.8 PDB: 1bc5_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=2.9e-10 Score=109.59 Aligned_cols=121 Identities=12% Similarity=0.154 Sum_probs=76.1
Q ss_pred CCCeEEEecCCCCh----hHHHHHHc------CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccc----------c
Q 015966 189 SPPACLVPGAGLGR----LALEISHL------GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIH----------S 248 (397)
Q Consensus 189 ~~~rVLvPGCGlGR----La~eLA~~------Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~----------~ 248 (397)
+..+||++|||||. +|..|++. |+.|+|+|+|..||..|+-- +||.-. .
T Consensus 105 ~~~rIld~GCgTGee~ysiAi~L~e~~~~~~~~~~I~atDis~~~L~~Ar~~-----------~y~~~~~~~~~~~~~~~ 173 (274)
T 1af7_A 105 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSG-----------IYRLSELKTLSPQQLQR 173 (274)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHT-----------EEEGGGGTTSCHHHHHH
T ss_pred CCcEEEEeeccCChhHHHHHHHHHHhcccCCCCeEEEEEECCHHHHHHHHhc-----------CCchhhhhcCCHHHHHH
Confidence 45799999999999 66666665 47999999999999988721 111000 0
Q ss_pred -ccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee---ccCChhhHHHHHHHHHHhc
Q 015966 249 -NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRIL 324 (397)
Q Consensus 249 -~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yi~~I~~~L 324 (397)
|.......+ ....+- + .+...+.|.++|+.+. ..+ ..+.||+|++.. |++. +...+.++.++++|
T Consensus 174 ~f~~~~~~~~--~~~~v~---~---~lr~~V~F~~~dl~~~-~~~-~~~~fDlI~crnvliyf~~-~~~~~vl~~~~~~L 242 (274)
T 1af7_A 174 YFMRGTGPHE--GLVRVR---Q---ELANYVEFSSVNLLEK-QYN-VPGPFDAIFCRNVMIYFDK-TTQEDILRRFVPLL 242 (274)
T ss_dssp HEEECCTTSC--SEEEEC---H---HHHTTEEEEECCTTCS-SCC-CCCCEEEEEECSSGGGSCH-HHHHHHHHHHGGGE
T ss_pred HhhccccCCC--Cceeec---h---hhcccCeEEecccCCC-CCC-cCCCeeEEEECCchHhCCH-HHHHHHHHHHHHHh
Confidence 000000000 000000 0 0113488999998873 111 146899999863 3443 44678999999999
Q ss_pred cCCcEEE
Q 015966 325 KDGGVWI 331 (397)
Q Consensus 325 KPGG~wI 331 (397)
||||+++
T Consensus 243 ~pgG~L~ 249 (274)
T 1af7_A 243 KPDGLLF 249 (274)
T ss_dssp EEEEEEE
T ss_pred CCCcEEE
Confidence 9999998
|
| >3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=99.04 E-value=5.5e-10 Score=101.05 Aligned_cols=132 Identities=16% Similarity=0.067 Sum_probs=86.1
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
.+++.+.+. ... +++.+|||+|||+|.++..||+++..|+|+|+|..+.
T Consensus 12 KL~ei~~~~-~~~--~~g~~VLDlG~G~G~~s~~la~~~~~V~gvD~~~~~~---------------------------- 60 (191)
T 3dou_A 12 KLEFLLDRY-RVV--RKGDAVIEIGSSPGGWTQVLNSLARKIISIDLQEMEE---------------------------- 60 (191)
T ss_dssp HHHHHHHHH-CCS--CTTCEEEEESCTTCHHHHHHTTTCSEEEEEESSCCCC----------------------------
T ss_pred HHHHHHHHc-CCC--CCCCEEEEEeecCCHHHHHHHHcCCcEEEEecccccc----------------------------
Confidence 455555543 221 2578999999999999999999999999999996210
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCC-----CC---CCCccEEEEeeccCC-----------hhhH
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDP-----SQ---VGAWDAVVTCFFIDT-----------AHNI 313 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~-----~~---~~~fD~VvT~FFIDt-----------a~Ni 313 (397)
+ .++.+++||+++..... .. .++||+|++....++ ...+
T Consensus 61 -----------~-----------~~v~~~~~D~~~~~~~~~~~~~~~~~~~~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~ 118 (191)
T 3dou_A 61 -----------I-----------AGVRFIRCDIFKETIFDDIDRALREEGIEKVDDVVSDAMAKVSGIPSRDHAVSYQIG 118 (191)
T ss_dssp -----------C-----------TTCEEEECCTTSSSHHHHHHHHHHHHTCSSEEEEEECCCCCCCSCHHHHHHHHHHHH
T ss_pred -----------C-----------CCeEEEEccccCHHHHHHHHHHhhcccCCcceEEecCCCcCCCCCcccCHHHHHHHH
Confidence 0 12677889987642100 00 148999998532211 1113
Q ss_pred HHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 314 VEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 314 ~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
...++.+.++|||||.+|-. .| .. -..+++...++. .|+-++..
T Consensus 119 ~~~l~~a~~~LkpGG~lv~k---~~--~~-----------~~~~~~~~~l~~-~F~~v~~~ 162 (191)
T 3dou_A 119 QRVMEIAVRYLRNGGNVLLK---QF--QG-----------DMTNDFIAIWRK-NFSSYKIS 162 (191)
T ss_dssp HHHHHHHHHHEEEEEEEEEE---EE--CS-----------THHHHHHHHHGG-GEEEEEEE
T ss_pred HHHHHHHHHHccCCCEEEEE---Ec--CC-----------CCHHHHHHHHHH-hcCEEEEE
Confidence 46788889999999999941 12 11 124677777865 58777643
|
| >4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=3e-10 Score=118.96 Aligned_cols=101 Identities=16% Similarity=0.160 Sum_probs=67.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
.+.||||+|||.|.++..||++|+.|+|+|+|..|+.+|+- ++.+..
T Consensus 66 ~~~~vLDvGCG~G~~~~~la~~ga~V~giD~~~~~i~~a~~---~a~~~~------------------------------ 112 (569)
T 4azs_A 66 RPLNVLDLGCAQGFFSLSLASKGATIVGIDFQQENINVCRA---LAEENP------------------------------ 112 (569)
T ss_dssp SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH---HHHTST------------------------------
T ss_pred CCCeEEEECCCCcHHHHHHHhCCCEEEEECCCHHHHHHHHH---HHHhcC------------------------------
Confidence 45799999999999999999999999999999999998872 221110
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhH--HHHHHHHHHhccCCcE
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNI--VEYIEIISRILKDGGV 329 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni--~~yi~~I~~~LKPGG~ 329 (397)
.-++.|..++..++.. +..+++||+|++.=.|....+. ...+..+.+.|+++|.
T Consensus 113 ------~~~~~~~~~~~~~~~~-~~~~~~fD~v~~~e~~ehv~~~~~~~~~~~~~~tl~~~~~ 168 (569)
T 4azs_A 113 ------DFAAEFRVGRIEEVIA-ALEEGEFDLAIGLSVFHHIVHLHGIDEVKRLLSRLADVTQ 168 (569)
T ss_dssp ------TSEEEEEECCHHHHHH-HCCTTSCSEEEEESCHHHHHHHHCHHHHHHHHHHHHHHSS
T ss_pred ------CCceEEEECCHHHHhh-hccCCCccEEEECcchhcCCCHHHHHHHHHHHHHhccccc
Confidence 0127888898877632 1235789999887433322222 1223334444555443
|
| >1jg1_A PIMT;, protein-L-isoaspartate O-methyltransferase; rossmann methyltransferase, protein repair isomerization; HET: SAH; 1.20A {Pyrococcus furiosus} SCOP: c.66.1.7 PDB: 1jg2_A* 1jg3_A* 1jg4_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.2e-09 Score=100.31 Aligned_cols=109 Identities=17% Similarity=0.057 Sum_probs=75.6
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
.+...+.+.+.. .++.+|||+|||+|.++..|++++ ..|+|+|+|..|+..++-.+...
T Consensus 78 ~~~~~~~~~l~~---~~~~~vLdiG~G~G~~~~~la~~~~~~v~~vD~~~~~~~~a~~~~~~~----------------- 137 (235)
T 1jg1_A 78 HMVAIMLEIANL---KPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERA----------------- 137 (235)
T ss_dssp HHHHHHHHHHTC---CTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHT-----------------
T ss_pred HHHHHHHHhcCC---CCCCEEEEEeCCcCHHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHc-----------------
Confidence 344555554432 256799999999999999999997 89999999999998776332110
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
. + .++.+..+|+..-.. ....||+|+...-+... .+.+.++|||||++|
T Consensus 138 ---------~--~-----------~~v~~~~~d~~~~~~---~~~~fD~Ii~~~~~~~~------~~~~~~~L~pgG~lv 186 (235)
T 1jg1_A 138 ---------G--V-----------KNVHVILGDGSKGFP---PKAPYDVIIVTAGAPKI------PEPLIEQLKIGGKLI 186 (235)
T ss_dssp ---------T--C-----------CSEEEEESCGGGCCG---GGCCEEEEEECSBBSSC------CHHHHHTEEEEEEEE
T ss_pred ---------C--C-----------CCcEEEECCcccCCC---CCCCccEEEECCcHHHH------HHHHHHhcCCCcEEE
Confidence 0 0 126778888733221 12459999987654432 247889999999988
Q ss_pred E
Q 015966 332 N 332 (397)
Q Consensus 332 N 332 (397)
-
T Consensus 187 i 187 (235)
T 1jg1_A 187 I 187 (235)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >1ne2_A Hypothetical protein TA1320; structural genomics, conserved hypothetical protein, PSI, protein structure initiative; 1.75A {Thermoplasma acidophilum} SCOP: c.66.1.32 | Back alignment and structure |
|---|
Probab=99.00 E-value=1.5e-09 Score=96.74 Aligned_cols=113 Identities=15% Similarity=0.096 Sum_probs=80.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|.++..+++.|. .|+|+|+|..|+..++..+.
T Consensus 51 ~~~~vlD~gcG~G~~~~~l~~~~~~~v~~vD~~~~~~~~a~~~~~----------------------------------- 95 (200)
T 1ne2_A 51 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAKRNCG----------------------------------- 95 (200)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHHHHCT-----------------------------------
T ss_pred CCCEEEEEeCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHhcC-----------------------------------
Confidence 567999999999999999999988 59999999999987652110
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--eccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccC
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g 345 (397)
++.++.+|+.++ .++||+|++. |+.-......++++.+.++| |++++...|
T Consensus 96 ---------~~~~~~~d~~~~------~~~~D~v~~~~p~~~~~~~~~~~~l~~~~~~~--g~~~~~~~~---------- 148 (200)
T 1ne2_A 96 ---------GVNFMVADVSEI------SGKYDTWIMNPPFGSVVKHSDRAFIDKAFETS--MWIYSIGNA---------- 148 (200)
T ss_dssp ---------TSEEEECCGGGC------CCCEEEEEECCCC-------CHHHHHHHHHHE--EEEEEEEEG----------
T ss_pred ---------CCEEEECcHHHC------CCCeeEEEECCCchhccCchhHHHHHHHHHhc--CcEEEEEcC----------
Confidence 157788998774 1689999986 32222122347899999998 666654211
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 346 QEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 346 ~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
-+.+.+.+++...| ++..
T Consensus 149 --------~~~~~~~~~~~~~g-~~~~ 166 (200)
T 1ne2_A 149 --------KARDFLRREFSARG-DVFR 166 (200)
T ss_dssp --------GGHHHHHHHHHHHE-EEEE
T ss_pred --------chHHHHHHHHHHCC-CEEE
Confidence 12466888888888 6655
|
| >1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=5.1e-10 Score=101.40 Aligned_cols=101 Identities=19% Similarity=0.113 Sum_probs=71.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|.++..||++ | ..|+|+|+|..|+..++..+... . .. ...
T Consensus 77 ~~~~vLDiG~G~G~~~~~la~~~~~~~~v~~vD~s~~~~~~a~~~~~~~---~-~~-------------------~~~-- 131 (226)
T 1i1n_A 77 EGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKD---D-PT-------------------LLS-- 131 (226)
T ss_dssp TTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH---C-TH-------------------HHH--
T ss_pred CCCEEEEEcCCcCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHhh---c-cc-------------------ccC--
Confidence 5679999999999999999987 4 68999999999998776332110 0 00 000
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
..++.+..+|+.+... ..+.||+|+....+. ..++.+.++|||||++|-
T Consensus 132 ---------~~~v~~~~~d~~~~~~---~~~~fD~i~~~~~~~------~~~~~~~~~LkpgG~lv~ 180 (226)
T 1i1n_A 132 ---------SGRVQLVVGDGRMGYA---EEAPYDAIHVGAAAP------VVPQALIDQLKPGGRLIL 180 (226)
T ss_dssp ---------TSSEEEEESCGGGCCG---GGCCEEEEEECSBBS------SCCHHHHHTEEEEEEEEE
T ss_pred ---------CCcEEEEECCcccCcc---cCCCcCEEEECCchH------HHHHHHHHhcCCCcEEEE
Confidence 0136778888875432 246899998765443 234688999999999985
|
| >1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=1.1e-09 Score=106.47 Aligned_cols=108 Identities=16% Similarity=0.118 Sum_probs=77.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+||++|||+|.++.+++++ +..|+++|+|..|+..|+--+..... . .+.
T Consensus 77 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~~-~----------------------~~~--- 130 (314)
T 1uir_A 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHMPEWHQ-G----------------------AFD--- 130 (314)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHCHHHHT-T----------------------GGG---
T ss_pred CCCeEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhcc-c----------------------ccc---
Confidence 4579999999999999999998 56899999999999877632210000 0 000
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCC-----hhh--HHHHHHHHHHhccCCcEEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT-----AHN--IVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDt-----a~N--i~~yi~~I~~~LKPGG~wIN 332 (397)
..++.++.+|..+... ...++||+|++..+... +.. ..++++.++++|||||+++-
T Consensus 131 --------~~~v~~~~~D~~~~l~--~~~~~fD~Ii~d~~~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~ 193 (314)
T 1uir_A 131 --------DPRAVLVIDDARAYLE--RTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGM 193 (314)
T ss_dssp --------CTTEEEEESCHHHHHH--HCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEE
T ss_pred --------CCceEEEEchHHHHHH--hcCCCccEEEECCCCcccccCcchhccHHHHHHHHHHhcCCCcEEEE
Confidence 1237889999877422 12578999998765432 122 26899999999999999984
|
| >1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A | Back alignment and structure |
|---|
Probab=98.99 E-value=1.9e-09 Score=106.42 Aligned_cols=124 Identities=20% Similarity=0.226 Sum_probs=83.5
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccc
Q 015966 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIH 247 (397)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~ 247 (397)
.|..++..+.-... .+..+|||+|||+|.++.+|+++ +..|+++|+|..|+..|+--+.... .
T Consensus 105 ~y~e~L~~l~l~~~----~~~~~VLdIG~G~G~~a~~la~~~~~~~V~~VDis~~~l~~Ar~~~~~~~--~--------- 169 (334)
T 1xj5_A 105 AYQEMITHLPLCSI----PNPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVA--I--------- 169 (334)
T ss_dssp HHHHHHHHHHHTTS----SCCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH--G---------
T ss_pred HHHHHHHHHHHhhC----CCCCEEEEECCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhhc--c---------
Confidence 35555555532111 14579999999999999999998 4689999999999988773221000 0
Q ss_pred cccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeec--cCChhh--HHHHHHHHHHh
Q 015966 248 SNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF--IDTAHN--IVEYIEIISRI 323 (397)
Q Consensus 248 ~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FF--IDta~N--i~~yi~~I~~~ 323 (397)
++. ..++.++.+|+.++... ...++||+|++..+ +..... ..++++.++++
T Consensus 170 -------------gl~-----------~~rv~~~~~D~~~~l~~-~~~~~fDlIi~d~~~p~~~~~~l~~~~~l~~~~~~ 224 (334)
T 1xj5_A 170 -------------GYE-----------DPRVNLVIGDGVAFLKN-AAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARA 224 (334)
T ss_dssp -------------GGG-----------STTEEEEESCHHHHHHT-SCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHH
T ss_pred -------------ccC-----------CCcEEEEECCHHHHHHh-ccCCCccEEEECCCCccCcchhhhHHHHHHHHHHh
Confidence 000 12378899998774221 12478999998644 222222 25899999999
Q ss_pred ccCCcEEEEe
Q 015966 324 LKDGGVWINL 333 (397)
Q Consensus 324 LKPGG~wIN~ 333 (397)
|||||+++.-
T Consensus 225 LkpgG~lv~~ 234 (334)
T 1xj5_A 225 LRPGGVVCTQ 234 (334)
T ss_dssp EEEEEEEEEE
T ss_pred cCCCcEEEEe
Confidence 9999999963
|
| >2qm3_A Predicted methyltransferase; putative methyltransferase, structural genomics, pyrococcus PSI-2, protein structure initiative; HET: MSE; 2.05A {Pyrococcus furiosus dsm 3638} | Back alignment and structure |
|---|
Probab=98.99 E-value=5.6e-09 Score=103.49 Aligned_cols=127 Identities=12% Similarity=0.054 Sum_probs=89.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+| |+|.++..+|++|. .|+|+|+|..|+..|+-.+... +
T Consensus 172 ~~~~VLDlG-G~G~~~~~la~~~~~~~v~~vDi~~~~l~~a~~~~~~~--------------------------g----- 219 (373)
T 2qm3_A 172 ENKDIFVLG-DDDLTSIALMLSGLPKRIAVLDIDERLTKFIEKAANEI--------------------------G----- 219 (373)
T ss_dssp TTCEEEEES-CTTCHHHHHHHHTCCSEEEEECSCHHHHHHHHHHHHHH--------------------------T-----
T ss_pred CCCEEEEEC-CCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc--------------------------C-----
Confidence 467999999 99999999999986 8999999999998877322110 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEE-E-EecCCcchhhhcc
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVW-I-NLGPLLYHFADLY 344 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~w-I-N~GPLlYh~~d~~ 344 (397)
.. ++.++.+|+.+.... ...++||+|++.--.... .+..+++.++++|||||.+ | .+..
T Consensus 220 -------~~-~v~~~~~D~~~~l~~-~~~~~fD~Vi~~~p~~~~-~~~~~l~~~~~~LkpgG~~~~~~~~~--------- 280 (373)
T 2qm3_A 220 -------YE-DIEIFTFDLRKPLPD-YALHKFDTFITDPPETLE-AIRAFVGRGIATLKGPRCAGYFGITR--------- 280 (373)
T ss_dssp -------CC-CEEEECCCTTSCCCT-TTSSCBSEEEECCCSSHH-HHHHHHHHHHHTBCSTTCEEEEEECT---------
T ss_pred -------CC-CEEEEEChhhhhchh-hccCCccEEEECCCCchH-HHHHHHHHHHHHcccCCeEEEEEEec---------
Confidence 01 378899999872210 124689999986311111 3678999999999999943 2 2111
Q ss_pred CCCCCccccCCH---HHHHHHHH-hCCCEEEEE
Q 015966 345 GQEDEMSIELSL---EDVKRVAL-HYGFEFEKE 373 (397)
Q Consensus 345 g~~~~~~ieLS~---EEl~~ll~-~~GFeii~e 373 (397)
..-+. +++.+++. ..||++...
T Consensus 281 -------~~~~~~~~~~~~~~l~~~~g~~~~~~ 306 (373)
T 2qm3_A 281 -------RESSLDKWREIQKLLLNEFNVVITDI 306 (373)
T ss_dssp -------TTCCHHHHHHHHHHHHHTSCCEEEEE
T ss_pred -------CcCCHHHHHHHHHHHHHhcCcchhhh
Confidence 11234 77888888 899988653
|
| >2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=1e-09 Score=96.63 Aligned_cols=94 Identities=15% Similarity=0.155 Sum_probs=63.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C----------CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCccc
Q 015966 189 SPPACLVPGAGLGRLALEISHL-G----------FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSD 257 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-G----------f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~ 257 (397)
++.+|||+|||+|.++..||++ | ..|+|+|+|..+. +
T Consensus 22 ~~~~vLDlGcG~G~~~~~la~~~~~~~~~~~~~~~~v~~vD~s~~~~------~-------------------------- 69 (196)
T 2nyu_A 22 PGLRVLDCGAAPGAWSQVAVQKVNAAGTDPSSPVGFVLGVDLLHIFP------L-------------------------- 69 (196)
T ss_dssp TTCEEEEETCCSCHHHHHHHHHTTTTCCCTTSCCCEEEEECSSCCCC------C--------------------------
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhccccccccCCCceEEEEechhccc------C--------------------------
Confidence 5679999999999999999998 5 6899999998320 0
Q ss_pred CccccccCCCCCCCCCCCCcceeE-ecccccccCC-----CCCCCCccEEEEeeccCC----hhhH-------HHHHHHH
Q 015966 258 QLRPVSIPDIHPASAGITEGFSMC-GGDFVEVYSD-----PSQVGAWDAVVTCFFIDT----AHNI-------VEYIEII 320 (397)
Q Consensus 258 qlr~v~iPDv~p~~~~~~~~ls~~-~GDF~ely~~-----~~~~~~fD~VvT~FFIDt----a~Ni-------~~yi~~I 320 (397)
.++.++ .+|+.+.... ....++||+|++.+-++. ..+. ...++.+
T Consensus 70 ------------------~~~~~~~~~d~~~~~~~~~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 131 (196)
T 2nyu_A 70 ------------------EGATFLCPADVTDPRTSQRILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVT 131 (196)
T ss_dssp ------------------TTCEEECSCCTTSHHHHHHHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred ------------------CCCeEEEeccCCCHHHHHHHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHH
Confidence 013344 5565432100 001357999998542221 1111 4789999
Q ss_pred HHhccCCcEEEE
Q 015966 321 SRILKDGGVWIN 332 (397)
Q Consensus 321 ~~~LKPGG~wIN 332 (397)
+++|||||++|-
T Consensus 132 ~~~LkpgG~lv~ 143 (196)
T 2nyu_A 132 PDILQPGGTFLC 143 (196)
T ss_dssp HHHEEEEEEEEE
T ss_pred HHHhcCCCEEEE
Confidence 999999999995
|
| >2b78_A Hypothetical protein SMU.776; structure genomics, methyltransferase, caries, structural genomics, unknown function; 2.00A {Streptococcus mutans} SCOP: b.122.1.9 c.66.1.51 PDB: 3ldf_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=1.6e-09 Score=108.39 Aligned_cols=133 Identities=8% Similarity=0.062 Sum_probs=89.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|.++..+|++|. .|+|+|+|..|+..|+..+.. + .
T Consensus 212 ~~~~VLDl~cGtG~~sl~la~~ga~~V~~vD~s~~al~~A~~N~~~----n----------------------~------ 259 (385)
T 2b78_A 212 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFEA----N----------------------H------ 259 (385)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHHH----T----------------------T------
T ss_pred CCCeEEEEeeccCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH----c----------------------C------
Confidence 456999999999999999999997 799999999999887732210 0 0
Q ss_pred CCCCCCCCC-cceeEecccccccCC-CCCCCCccEEEEe--ec-------cCChhhHHHHHHHHHHhccCCcEEEEecCC
Q 015966 268 HPASAGITE-GFSMCGGDFVEVYSD-PSQVGAWDAVVTC--FF-------IDTAHNIVEYIEIISRILKDGGVWINLGPL 336 (397)
Q Consensus 268 ~p~~~~~~~-~ls~~~GDF~ely~~-~~~~~~fD~VvT~--FF-------IDta~Ni~~yi~~I~~~LKPGG~wIN~GPL 336 (397)
... ++.++.+|+.++... ....++||+|+.. +| .+....+.+.++.+.++|||||+++-...
T Consensus 260 ------~~~~~v~~~~~D~~~~l~~~~~~~~~fD~Ii~DPP~~~~~~~~~~~~~~~~~~ll~~~~~~L~pgG~l~~~~~- 332 (385)
T 2b78_A 260 ------LDMANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIASTN- 332 (385)
T ss_dssp ------CCCTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEEC-
T ss_pred ------CCccceEEEECCHHHHHHHHHHhCCCccEEEECCCCCCCChhhHHHHHHHHHHHHHHHHHhcCCCcEEEEEeC-
Confidence 011 377899998774210 0113589999974 22 22234455678888999999999884210
Q ss_pred cchhhhccCCCCCccccCCH----HHHHHHHHhCCCEEEEEe
Q 015966 337 LYHFADLYGQEDEMSIELSL----EDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 337 lYh~~d~~g~~~~~~ieLS~----EEl~~ll~~~GFeii~e~ 374 (397)
+-.++. +.+++.+.+.|++++...
T Consensus 333 --------------~~~~~~~~~~~~i~~~~~~~g~~~~~~~ 360 (385)
T 2b78_A 333 --------------AANMTVSQFKKQIEKGFGKQKHTYLDLQ 360 (385)
T ss_dssp --------------CTTSCHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred --------------CCcCCHHHHHHHHHHHHHHcCCcEEEeC
Confidence 112333 445566678899966654
|
| >1mjf_A Spermidine synthase; spermidine synthetase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus furiosus} SCOP: c.66.1.17 PDB: 2e5w_A* 2zsu_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=9.5e-10 Score=105.17 Aligned_cols=111 Identities=18% Similarity=0.207 Sum_probs=75.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccc-cCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVS-IPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~-iPD 266 (397)
++.+|||+|||+|.++.+++++|. .|+++|+|..|+..|+-.+ ... . ++. ..+
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~v~~vDid~~~i~~ar~~~-~~~---------------~---------~l~~~~~ 129 (281)
T 1mjf_A 75 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLI-KID---------------N---------GLLEAML 129 (281)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHT-CTT---------------T---------THHHHHH
T ss_pred CCCeEEEEcCCcCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH-hhc---------------c---------ccccccc
Confidence 456999999999999999999864 8999999999998776322 000 0 000 000
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeecc--CChhhH--HHHHHHHHHhccCCcEEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFI--DTAHNI--VEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFI--Dta~Ni--~~yi~~I~~~LKPGG~wIN 332 (397)
.....++.++.+|..++.. . .++||+|+...+. .....+ .++++.++++|||||+++.
T Consensus 130 -----~~~~~~v~~~~~D~~~~l~--~-~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~ 191 (281)
T 1mjf_A 130 -----NGKHEKAKLTIGDGFEFIK--N-NRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVT 191 (281)
T ss_dssp -----TTCCSSEEEEESCHHHHHH--H-CCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEE
T ss_pred -----cCCCCcEEEEECchHHHhc--c-cCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEE
Confidence 0001247889999876422 1 4789999976542 112222 6899999999999999995
|
| >3k6r_A Putative transferase PH0793; structural genomics, PSI structure initiative, midwest center for structural genomic unknown function; 2.10A {Pyrococcus horikoshii} PDB: 3a25_A* 3a26_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=2.7e-09 Score=103.29 Aligned_cols=146 Identities=18% Similarity=0.187 Sum_probs=99.5
Q ss_pred ccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhccccc
Q 015966 159 WAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETA 237 (397)
Q Consensus 159 WS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~ 237 (397)
|+.--..||.. +. +.+. ++.+|||+|||+|.++..+|++|. .|+|+|+++.++..++--+..
T Consensus 108 f~~~~~~er~r----i~----~~~~-----~g~~VlD~~aG~G~~~i~~a~~g~~~V~avD~np~a~~~~~~N~~~---- 170 (278)
T 3k6r_A 108 FSPANVKERVR----MA----KVAK-----PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHL---- 170 (278)
T ss_dssp CCGGGHHHHHH----HH----HHCC-----TTCEEEETTCTTTTTTHHHHHHTCCEEEEECCCHHHHHHHHHHHHH----
T ss_pred EcCCcHHHHHH----HH----HhcC-----CCCEEEEecCcCcHHHHHHHHhcCCeEEEEECCHHHHHHHHHHHHH----
Confidence 66665666752 32 3332 577999999999999999999985 899999999998766522110
Q ss_pred CccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHH
Q 015966 238 GEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYI 317 (397)
Q Consensus 238 ~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi 317 (397)
+ ...+.+.++.+|.+++.. .+.||.|+...- ..-.+++
T Consensus 171 N----------------------------------~v~~~v~~~~~D~~~~~~----~~~~D~Vi~~~p----~~~~~~l 208 (278)
T 3k6r_A 171 N----------------------------------KVEDRMSAYNMDNRDFPG----ENIADRILMGYV----VRTHEFI 208 (278)
T ss_dssp T----------------------------------TCTTTEEEECSCTTTCCC----CSCEEEEEECCC----SSGGGGH
T ss_pred c----------------------------------CCCCcEEEEeCcHHHhcc----ccCCCEEEECCC----CcHHHHH
Confidence 0 012237788999888643 578999875422 2223678
Q ss_pred HHHHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 318 EIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 318 ~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
+.+.++|||||++. .|.+.... ....-..+.++++++..||++...
T Consensus 209 ~~a~~~lk~gG~ih-----~~~~~~e~-----~~~~~~~e~i~~~~~~~g~~v~~~ 254 (278)
T 3k6r_A 209 PKALSIAKDGAIIH-----YHNTVPEK-----LMPREPFETFKRITKEYGYDVEKL 254 (278)
T ss_dssp HHHHHHEEEEEEEE-----EEEEEEGG-----GTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred HHHHHHcCCCCEEE-----EEeeeccc-----ccchhHHHHHHHHHHHcCCcEEEE
Confidence 88899999999754 23232110 012345688999999999988653
|
| >1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7 | Back alignment and structure |
|---|
Probab=98.96 E-value=1.2e-09 Score=99.60 Aligned_cols=104 Identities=19% Similarity=0.151 Sum_probs=72.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CC-------eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCcc
Q 015966 189 SPPACLVPGAGLGRLALEISHL-GF-------ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLR 260 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf-------~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr 260 (397)
++.+|||+|||+|.++..||++ |. .|+|+|+|..|+..++-.+.... ..
T Consensus 84 ~~~~VLdiG~G~G~~~~~la~~~~~~~~~~~~~v~~vD~~~~~~~~a~~~~~~~~----~~------------------- 140 (227)
T 1r18_A 84 PGARILDVGSGSGYLTACFYRYIKAKGVDADTRIVGIEHQAELVRRSKANLNTDD----RS------------------- 140 (227)
T ss_dssp TTCEEEEESCTTSHHHHHHHHHHHHSCCCTTCEEEEEESCHHHHHHHHHHHHHHH----HH-------------------
T ss_pred CCCEEEEECCCccHHHHHHHHhcccccCCccCEEEEEEcCHHHHHHHHHHHHhcC----cc-------------------
Confidence 5679999999999999999985 53 89999999999987764332100 00
Q ss_pred ccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE-ecC
Q 015966 261 PVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN-LGP 335 (397)
Q Consensus 261 ~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN-~GP 335 (397)
.+.. .++.+..+|+.+.+. ..+.||+|+....+.. .++.+.++|||||++|- +++
T Consensus 141 ~~~~-----------~~v~~~~~d~~~~~~---~~~~fD~I~~~~~~~~------~~~~~~~~LkpgG~lvi~~~~ 196 (227)
T 1r18_A 141 MLDS-----------GQLLIVEGDGRKGYP---PNAPYNAIHVGAAAPD------TPTELINQLASGGRLIVPVGP 196 (227)
T ss_dssp HHHH-----------TSEEEEESCGGGCCG---GGCSEEEEEECSCBSS------CCHHHHHTEEEEEEEEEEESC
T ss_pred ccCC-----------CceEEEECCcccCCC---cCCCccEEEECCchHH------HHHHHHHHhcCCCEEEEEEec
Confidence 0000 126778888876322 1368999987655443 23788999999999984 443
|
| >1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.1e-09 Score=105.10 Aligned_cols=135 Identities=16% Similarity=0.150 Sum_probs=91.6
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
...+|||+|||+|+++..|+++ +..++++|+ ..|+..++ . .
T Consensus 193 ~~~~vlDvG~G~G~~~~~l~~~~p~~~~~~~D~-~~~~~~a~--------------------------------~--~-- 235 (358)
T 1zg3_A 193 GLESLVDVGGGTGGVTKLIHEIFPHLKCTVFDQ-PQVVGNLT--------------------------------G--N-- 235 (358)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTSEEEEEEC-HHHHSSCC--------------------------------C--C--
T ss_pred CCCEEEEECCCcCHHHHHHHHHCCCCeEEEecc-HHHHhhcc--------------------------------c--C--
Confidence 4569999999999999999998 467899999 57862111 0 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhh--HHHHHHHHHHhccC---CcEEEEecCCcc---
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN--IVEYIEIISRILKD---GGVWINLGPLLY--- 338 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N--i~~yi~~I~~~LKP---GG~wIN~GPLlY--- 338 (397)
.++.+..+||.+ ..| .||+|+....+....+ ....++.++++||| ||++|-.-+..-
T Consensus 236 ---------~~v~~~~~d~~~--~~~----~~D~v~~~~vlh~~~d~~~~~~l~~~~~~L~p~~~gG~l~i~e~~~~~~~ 300 (358)
T 1zg3_A 236 ---------ENLNFVGGDMFK--SIP----SADAVLLKWVLHDWNDEQSLKILKNSKEAISHKGKDGKVIIIDISIDETS 300 (358)
T ss_dssp ---------SSEEEEECCTTT--CCC----CCSEEEEESCGGGSCHHHHHHHHHHHHHHTGGGGGGCEEEEEECEECTTC
T ss_pred ---------CCcEEEeCccCC--CCC----CceEEEEcccccCCCHHHHHHHHHHHHHhCCCCCCCcEEEEEEeccCCCC
Confidence 126789999976 222 4999998876553333 56999999999999 998884221110
Q ss_pred ------hh---hhccCCCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 339 ------HF---ADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 339 ------h~---~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
.+ .+..-.......+.+.+|++++++++||++++...
T Consensus 301 ~~~~~~~~~~~~d~~~~~~~~g~~~t~~e~~~ll~~aGf~~~~~~~ 346 (358)
T 1zg3_A 301 DDRGLTELQLDYDLVMLTMFLGKERTKQEWEKLIYDAGFSSYKITP 346 (358)
T ss_dssp SCHHHHHHHHHHHHHHHHHHSCCCEEHHHHHHHHHHTTCCEEEEEE
T ss_pred ccchhhhHHHhhCHHHhccCCCCCCCHHHHHHHHHHcCCCeeEEEe
Confidence 00 00000000002357999999999999999887543
|
| >2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.4e-09 Score=102.58 Aligned_cols=108 Identities=16% Similarity=0.156 Sum_probs=77.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+||++|||+|.++.++++.+ -.|+++|+|..|+..|+-.+... + . ...
T Consensus 78 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~a~~~~~~~---~------------------~---~~~--- 130 (283)
T 2i7c_A 78 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNI---S------------------C---GYE--- 130 (283)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTT---S------------------G---GGG---
T ss_pred CCCeEEEEeCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHh---c------------------c---ccC---
Confidence 45799999999999999999883 68999999999998776321100 0 0 000
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhH--HHHHHHHHHhccCCcEEEEe
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNI--VEYIEIISRILKDGGVWINL 333 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni--~~yi~~I~~~LKPGG~wIN~ 333 (397)
..++.++.+|+.+... ...++||+|++..+.. .+..+ .++++.++++|||||+++..
T Consensus 131 --------~~~v~~~~~D~~~~l~--~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~L~pgG~lv~~ 191 (283)
T 2i7c_A 131 --------DKRVNVFIEDASKFLE--NVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVAQ 191 (283)
T ss_dssp --------STTEEEEESCHHHHHH--HCCSCEEEEEEECCCTTTGGGGGSSHHHHHHHHHHEEEEEEEEEE
T ss_pred --------CCcEEEEECChHHHHH--hCCCCceEEEEcCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEEE
Confidence 1247889999877422 1247899999865422 23334 58999999999999999953
|
| >1zq9_A Probable dimethyladenosine transferase; SGC, structural genomics, structural genomics consortium; HET: SAM; 1.90A {Homo sapiens} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.95 E-value=6.5e-09 Score=99.68 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=76.4
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
.+++.|.+.++. .++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++-.+...
T Consensus 15 ~i~~~i~~~~~~---~~~~~VLDiG~G~G~lt~~L~~~~~~v~~vD~~~~~~~~a~~~~~~~------------------ 73 (285)
T 1zq9_A 15 LIINSIIDKAAL---RPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELHKRVQGT------------------ 73 (285)
T ss_dssp HHHHHHHHHTCC---CTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHHHHHTTS------------------
T ss_pred HHHHHHHHhcCC---CCCCEEEEEcCcccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHhc------------------
Confidence 356666665542 25679999999999999999999999999999999998766221100
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee--ccCChhhHHHHHH------------
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF--FIDTAHNIVEYIE------------ 318 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F--FIDta~Ni~~yi~------------ 318 (397)
....++.++.+|+.++.. ..||+|+++. .+.+ +-+...++
T Consensus 74 --------------------~~~~~v~~~~~D~~~~~~-----~~fD~vv~nlpy~~~~-~~~~~~l~~~~~~~~~~~m~ 127 (285)
T 1zq9_A 74 --------------------PVASKLQVLVGDVLKTDL-----PFFDTCVANLPYQISS-PFVFKLLLHRPFFRCAILMF 127 (285)
T ss_dssp --------------------TTGGGEEEEESCTTTSCC-----CCCSEEEEECCGGGHH-HHHHHHHHCSSCCSEEEEEE
T ss_pred --------------------CCCCceEEEEcceecccc-----hhhcEEEEecCcccch-HHHHHHHhcCcchhhhhhhh
Confidence 001237889999987521 3799999874 2322 21334432
Q ss_pred --HH--HHhccCCcEEE
Q 015966 319 --II--SRILKDGGVWI 331 (397)
Q Consensus 319 --~I--~~~LKPGG~wI 331 (397)
++ .++|||||.+.
T Consensus 128 qkEva~r~vlkPGg~~y 144 (285)
T 1zq9_A 128 QREFALRLVAKPGDKLY 144 (285)
T ss_dssp EHHHHHHHHCCTTCTTC
T ss_pred hHHHHHHHhcCCCCccc
Confidence 33 36899999764
|
| >3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=98.95 E-value=1.5e-09 Score=107.04 Aligned_cols=103 Identities=19% Similarity=0.183 Sum_probs=76.1
Q ss_pred CCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 190 PPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
..+||++|||+|.++.+|+++ +..|+++|++..|+..|+--+. .+
T Consensus 90 ~~rVLdIG~G~G~la~~la~~~p~~~v~~VEidp~vi~~Ar~~~~-------------------------------~~-- 136 (317)
T 3gjy_A 90 KLRITHLGGGACTMARYFADVYPQSRNTVVELDAELARLSREWFD-------------------------------IP-- 136 (317)
T ss_dssp GCEEEEESCGGGHHHHHHHHHSTTCEEEEEESCHHHHHHHHHHSC-------------------------------CC--
T ss_pred CCEEEEEECCcCHHHHHHHHHCCCcEEEEEECCHHHHHHHHHhcc-------------------------------cc--
Confidence 459999999999999999983 7899999999999987762110 00
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhH--HHHHHHHHHhccCCcEEEE
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNI--VEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni--~~yi~~I~~~LKPGG~wIN 332 (397)
...++.++.+|..++.. ....++||+|++-.|.. ....+ .++++.++++|||||+++-
T Consensus 137 ------~~~rv~v~~~Da~~~l~-~~~~~~fDvIi~D~~~~~~~~~~L~t~efl~~~~r~LkpgGvlv~ 198 (317)
T 3gjy_A 137 ------RAPRVKIRVDDARMVAE-SFTPASRDVIIRDVFAGAITPQNFTTVEFFEHCHRGLAPGGLYVA 198 (317)
T ss_dssp ------CTTTEEEEESCHHHHHH-TCCTTCEEEEEECCSTTSCCCGGGSBHHHHHHHHHHEEEEEEEEE
T ss_pred ------CCCceEEEECcHHHHHh-hccCCCCCEEEECCCCccccchhhhHHHHHHHHHHhcCCCcEEEE
Confidence 01247889999887532 11247899999865422 12222 5899999999999999983
|
| >1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.6e-09 Score=103.15 Aligned_cols=107 Identities=15% Similarity=0.104 Sum_probs=74.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-G-f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++.+++++ | ..|+++|+|..|+..++--+.... . ...
T Consensus 90 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~~~~a~~~~~~~~--~----------------------~~~--- 142 (296)
T 1inl_A 90 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYLKQTS--C----------------------GFD--- 142 (296)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHCHHHH--G----------------------GGG---
T ss_pred CCCEEEEEcCCcCHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHhHhhc--c----------------------ccC---
Confidence 3479999999999999999998 3 689999999999987763221000 0 000
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC---Chhh--HHHHHHHHHHhccCCcEEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID---TAHN--IVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID---ta~N--i~~yi~~I~~~LKPGG~wIN 332 (397)
..++.++.+|+.+... ...++||+|+...+-. .... ..++++.++++|||||+++-
T Consensus 143 --------~~~v~~~~~D~~~~l~--~~~~~fD~Ii~d~~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~ 203 (296)
T 1inl_A 143 --------DPRAEIVIANGAEYVR--KFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSA 203 (296)
T ss_dssp --------CTTEEEEESCHHHHGG--GCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEE
T ss_pred --------CCceEEEECcHHHHHh--hCCCCceEEEEcCCCcccCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 1237889999877422 1247899999754311 1111 25899999999999999995
|
| >2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.2e-09 Score=104.31 Aligned_cols=107 Identities=21% Similarity=0.189 Sum_probs=74.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
+..+|||+|||+|.++.+|++++ ..|+++|+|..|+..|+--+.... + .+.
T Consensus 95 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~ar~~~~~~~---------------~---------~~~--- 147 (304)
T 2o07_A 95 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPGMA---------------I---------GYS--- 147 (304)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHH---------------G---------GGG---
T ss_pred CCCEEEEECCCchHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHhHHhh---------------c---------ccC---
Confidence 45799999999999999999984 689999999999987763221000 0 000
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--Chh--hHHHHHHHHHHhccCCcEEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAH--NIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~--Ni~~yi~~I~~~LKPGG~wIN 332 (397)
..++.++.+|..++.. ...++||+|++..+.. .+. ...++++.++++|||||++|.
T Consensus 148 --------~~rv~v~~~Da~~~l~--~~~~~fD~Ii~d~~~~~~~~~~l~~~~~l~~~~~~LkpgG~lv~ 207 (304)
T 2o07_A 148 --------SSKLTLHVGDGFEFMK--QNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCC 207 (304)
T ss_dssp --------CTTEEEEESCHHHHHH--TCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEE
T ss_pred --------CCcEEEEECcHHHHHh--hCCCCceEEEECCCCCCCcchhhhHHHHHHHHHhccCCCeEEEE
Confidence 1237888999877422 1247899999764421 111 124789999999999999995
|
| >1ixk_A Methyltransferase; open beta sheet; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=98.94 E-value=6.9e-09 Score=100.84 Aligned_cols=130 Identities=12% Similarity=0.028 Sum_probs=88.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|..+..||++ +..|+|+|+|..|+..++-.+... ++
T Consensus 118 ~g~~VLDlg~G~G~~t~~la~~~~~~~~v~avD~s~~~l~~a~~~~~~~--------------------------g~--- 168 (315)
T 1ixk_A 118 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRL--------------------------GV--- 168 (315)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH--------------------------TC---
T ss_pred CCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHHh--------------------------CC---
Confidence 5679999999999999999986 368999999999998776332110 00
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe---e---ccCCh---------hhH-------HHHHHHHHHh
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---F---FIDTA---------HNI-------VEYIEIISRI 323 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~---F---FIDta---------~Ni-------~~yi~~I~~~ 323 (397)
.++.++.+|+.++.. ..+.||+|++. . .+... .++ .+.|+.++++
T Consensus 169 ----------~~v~~~~~D~~~~~~---~~~~fD~Il~d~Pcsg~g~~~~~p~~~~~~~~~~~~~~~~~q~~~L~~~~~~ 235 (315)
T 1ixk_A 169 ----------LNVILFHSSSLHIGE---LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEV 235 (315)
T ss_dssp ----------CSEEEESSCGGGGGG---GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------CeEEEEECChhhccc---ccccCCEEEEeCCCCCcccccCChhHhhcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 126778889877532 24689999873 1 12111 111 4789999999
Q ss_pred ccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 324 LKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 324 LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
|||||++|-..-- ++ -+=..+.+..++++.||+++..
T Consensus 236 LkpGG~lv~stcs-~~------------~~Ene~~v~~~l~~~~~~~~~~ 272 (315)
T 1ixk_A 236 LKPGGILVYSTCS-LE------------PEENEFVIQWALDNFDVELLPL 272 (315)
T ss_dssp EEEEEEEEEEESC-CC------------GGGTHHHHHHHHHHSSEEEECC
T ss_pred CCCCCEEEEEeCC-CC------------hHHhHHHHHHHHhcCCCEEecC
Confidence 9999999831100 00 0113455777888899988753
|
| >3sso_A Methyltransferase; macrolide, natural product, rossman fold; HET: SAH; 1.90A {Micromonospora griseorubida} PDB: 3ssn_A* 3ssm_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=2.6e-09 Score=108.90 Aligned_cols=145 Identities=13% Similarity=0.097 Sum_probs=93.2
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCC------CChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCcc
Q 015966 170 CYKPILEELDALFPNRSKESPPACLVPGAG------LGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEW 240 (397)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCG------lGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~ 240 (397)
.|.++.+.+.+.+.. +..+|||+||| +|..+..++++ +..|+|+|+|..|.. +
T Consensus 201 ~y~~~Ye~lL~~l~~----~~~rVLDIGCG~~~~~~TGG~Sl~la~~~fP~a~V~GVDiSp~m~~------~-------- 262 (419)
T 3sso_A 201 WFTPHYDRHFRDYRN----QQVRVLEIGVGGYKHPEWGGGSLRMWKSFFPRGQIYGLDIMDKSHV------D-------- 262 (419)
T ss_dssp BCHHHHHHHHGGGTT----SCCEEEEECCSCTTCSSCCCHHHHHHHHHCTTCEEEEEESSCCGGG------C--------
T ss_pred hHHHHHHHHHHhhcC----CCCEEEEEecCCCcCCCCCHHHHHHHHHhCCCCEEEEEECCHHHhh------c--------
Confidence 466677766655532 46799999999 88888888875 679999999998820 0
Q ss_pred ccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCC---CCCCCCccEEEEeeccCChhhHHHHH
Q 015966 241 NIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD---PSQVGAWDAVVTCFFIDTAHNIVEYI 317 (397)
Q Consensus 241 ~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~---~~~~~~fD~VvT~FFIDta~Ni~~yi 317 (397)
..++.+++||+.++-.. ....++||+|++.. .....+...+|
T Consensus 263 ----------------------------------~~rI~fv~GDa~dlpf~~~l~~~d~sFDlVisdg-sH~~~d~~~aL 307 (419)
T 3sso_A 263 ----------------------------------ELRIRTIQGDQNDAEFLDRIARRYGPFDIVIDDG-SHINAHVRTSF 307 (419)
T ss_dssp ----------------------------------BTTEEEEECCTTCHHHHHHHHHHHCCEEEEEECS-CCCHHHHHHHH
T ss_pred ----------------------------------CCCcEEEEecccccchhhhhhcccCCccEEEECC-cccchhHHHHH
Confidence 01377899998774210 00137899998753 23446788999
Q ss_pred HHHHHhccCCcEEEEecCCcchhhhccCCCC--CccccCCHHHHHHHHHhCCC
Q 015966 318 EIISRILKDGGVWINLGPLLYHFADLYGQED--EMSIELSLEDVKRVALHYGF 368 (397)
Q Consensus 318 ~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~--~~~ieLS~EEl~~ll~~~GF 368 (397)
+.++++|||||++|.. -+...|-..+++.. ...-.-..+-+++++..+..
T Consensus 308 ~el~rvLKPGGvlVi~-Dl~tsy~p~f~G~~~~~~~~~tii~~lk~l~D~l~~ 359 (419)
T 3sso_A 308 AALFPHVRPGGLYVIE-DMWTAYWPGFGGQADPQECSGTSLGLLKSLIDAIQH 359 (419)
T ss_dssp HHHGGGEEEEEEEEEE-CGGGGGCTBTTCCSSTTCCTTSHHHHHHHHHHHHTG
T ss_pred HHHHHhcCCCeEEEEE-ecccccCcccCCCccCCcchhHHHHHHHHHHHHhcc
Confidence 9999999999999952 22222222222111 01122345666667666544
|
| >2ih2_A Modification methylase TAQI; DNA, DNA methyltransferase, target base partner, 5-methylpyr 2(1H)-ONE, base flipping; HET: 5PY 6MA NEA; 1.61A {Thermus aquaticus} SCOP: c.66.1.27 d.287.1.1 PDB: 2ibs_A* 2ibt_A* 2ih4_A* 2ih5_A* 2jg3_A* 2np6_A* 2np7_A* 1aqj_A* 1aqi_A* 2adm_A* 1g38_A* | Back alignment and structure |
|---|
Probab=98.93 E-value=7.2e-09 Score=102.48 Aligned_cols=130 Identities=15% Similarity=0.137 Sum_probs=91.9
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccc
Q 015966 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 248 (397)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~ 248 (397)
..+.+.+.+.+.. .++.+|||||||+|.++..++++ +..++|+|++..|+..|
T Consensus 25 ~~l~~~~~~~~~~---~~~~~vLD~gcGtG~~~~~~~~~~~~~~~i~gvDi~~~~~~~a--------------------- 80 (421)
T 2ih2_A 25 PEVVDFMVSLAEA---PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKALDLP--------------------- 80 (421)
T ss_dssp HHHHHHHHHHCCC---CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTTCCCC---------------------
T ss_pred HHHHHHHHHhhcc---CCCCEEEECCCCChHHHHHHHHHhCCCCeEEEEECCHHHHHhC---------------------
Confidence 4677777777653 24569999999999999999984 57999999999885211
Q ss_pred ccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--eccC-C--------hhhH----
Q 015966 249 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFID-T--------AHNI---- 313 (397)
Q Consensus 249 ~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFID-t--------a~Ni---- 313 (397)
.++.++.+|+.+... .+.||+|+++ |+-. . ....
T Consensus 81 ---------------------------~~~~~~~~D~~~~~~----~~~fD~Ii~NPPy~~~~~~~~~~~~~~~~~~~~~ 129 (421)
T 2ih2_A 81 ---------------------------PWAEGILADFLLWEP----GEAFDLILGNPPYGIVGEASKYPIHVFKAVKDLY 129 (421)
T ss_dssp ---------------------------TTEEEEESCGGGCCC----SSCEEEEEECCCCCCBSCTTTCSBCCCHHHHHHH
T ss_pred ---------------------------CCCcEEeCChhhcCc----cCCCCEEEECcCccCcccccccccccCHHHHHHH
Confidence 125678899887532 4689999996 4311 1 0112
Q ss_pred --------------HHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCC
Q 015966 314 --------------VEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGF 368 (397)
Q Consensus 314 --------------~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GF 368 (397)
..+++.+.++|||||+++-+-|--|.+. -+.+++++.+.+.|+
T Consensus 130 ~~~~~~~~~~~~~~~~fl~~~~~~Lk~~G~~~~i~p~~~l~~------------~~~~~lr~~l~~~~~ 186 (421)
T 2ih2_A 130 KKAFSTWKGKYNLYGAFLEKAVRLLKPGGVLVFVVPATWLVL------------EDFALLREFLAREGK 186 (421)
T ss_dssp HHHCTTCCTTCCHHHHHHHHHHHHEEEEEEEEEEEEGGGGTC------------GGGHHHHHHHHHHSE
T ss_pred HHhhhcccCCccHHHHHHHHHHHHhCCCCEEEEEEChHHhcC------------ccHHHHHHHHHhcCC
Confidence 2568899999999999986555433211 134678888887777
|
| >2oxt_A Nucleoside-2'-O-methyltransferase; flavivirus, viral enzyme, RNA capping, S-adenosyl-L-methionine, viral protein; HET: SAM; 2.90A {Meaban virus} | Back alignment and structure |
|---|
Probab=98.93 E-value=9.7e-10 Score=105.09 Aligned_cols=100 Identities=8% Similarity=-0.018 Sum_probs=68.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|.++..+|++ ..|+|+|+|+ |+..++ +. + ++.
T Consensus 74 ~g~~VLDlGcGtG~~s~~la~~-~~V~gvD~s~-m~~~a~-------~~-----------------------~--~~~-- 117 (265)
T 2oxt_A 74 LTGRVVDLGCGRGGWSYYAASR-PHVMDVRAYT-LGVGGH-------EV-----------------------P--RIT-- 117 (265)
T ss_dssp CCEEEEEESCTTSHHHHHHHTS-TTEEEEEEEC-CCCSSC-------CC-----------------------C--CCC--
T ss_pred CCCEEEEeCcCCCHHHHHHHHc-CcEEEEECch-hhhhhh-------hh-----------------------h--hhh--
Confidence 5679999999999999999999 7899999998 742110 00 0 000
Q ss_pred CCCCCCCCcceeE--ecccccccCCCCCCCCccEEEEeec-cCChh--h---HHHHHHHHHHhccCCc--EEEE
Q 015966 269 PASAGITEGFSMC--GGDFVEVYSDPSQVGAWDAVVTCFF-IDTAH--N---IVEYIEIISRILKDGG--VWIN 332 (397)
Q Consensus 269 p~~~~~~~~ls~~--~GDF~ely~~~~~~~~fD~VvT~FF-IDta~--N---i~~yi~~I~~~LKPGG--~wIN 332 (397)
...+.++.++ ++|++++. .++||+|++.+- +.... + ....|+.++++||||| .||-
T Consensus 118 ---~~~~~~v~~~~~~~D~~~l~-----~~~fD~V~sd~~~~~~~~~~d~~~~l~~L~~~~r~LkpGG~~~fv~ 183 (265)
T 2oxt_A 118 ---ESYGWNIVKFKSRVDIHTLP-----VERTDVIMCDVGESSPKWSVESERTIKILELLEKWKVKNPSADFVV 183 (265)
T ss_dssp ---CBTTGGGEEEECSCCTTTSC-----CCCCSEEEECCCCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCEEEE
T ss_pred ---hccCCCeEEEecccCHhHCC-----CCCCcEEEEeCcccCCccchhHHHHHHHHHHHHHHhccCCCeEEEE
Confidence 0001146778 89998752 478999998642 11111 1 1237899999999999 8884
|
| >2b25_A Hypothetical protein; structural genomics, methyl transferase, SAM, structural GEN consortium, SGC, transferase; HET: SAM; 2.50A {Homo sapiens} SCOP: c.66.1.13 | Back alignment and structure |
|---|
Probab=98.92 E-value=4.2e-09 Score=102.13 Aligned_cols=129 Identities=16% Similarity=0.146 Sum_probs=81.2
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHHhhhhcccccCcccccccc
Q 015966 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWI 246 (397)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi 246 (397)
.|+.....+.+.+.. .++.+|||+|||+|.++..||++ | ..|+|+|+|..|+..|+-.+.... ..+.+
T Consensus 89 ~~~~~~~~~l~~l~~---~~g~~VLDiG~G~G~~~~~la~~~g~~~~v~~vD~~~~~~~~a~~~~~~~~--~~~~l---- 159 (336)
T 2b25_A 89 TFPKDINMILSMMDI---NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWR--DSWKL---- 159 (336)
T ss_dssp CCHHHHHHHHHHHTC---CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHH--HHHTT----
T ss_pred cCHHHHHHHHHhcCC---CCCCEEEEeCCCcCHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHHHHHhh--ccccc----
Confidence 455544444444322 25779999999999999999998 5 789999999999988774321100 00000
Q ss_pred ccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccC
Q 015966 247 HSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKD 326 (397)
Q Consensus 247 ~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKP 326 (397)
| .+. ....++.+..+|+.+... +...+.||+|+.... +...+++.++++|||
T Consensus 160 ----n---------~~~---------~~~~~v~~~~~d~~~~~~-~~~~~~fD~V~~~~~-----~~~~~l~~~~~~Lkp 211 (336)
T 2b25_A 160 ----S---------HVE---------EWPDNVDFIHKDISGATE-DIKSLTFDAVALDML-----NPHVTLPVFYPHLKH 211 (336)
T ss_dssp ----T---------CSS---------CCCCCEEEEESCTTCCC--------EEEEEECSS-----STTTTHHHHGGGEEE
T ss_pred ----c---------ccc---------ccCCceEEEECChHHccc-ccCCCCeeEEEECCC-----CHHHHHHHHHHhcCC
Confidence 0 000 011247889999877531 112467999987432 122478999999999
Q ss_pred CcEEEEecC
Q 015966 327 GGVWINLGP 335 (397)
Q Consensus 327 GG~wIN~GP 335 (397)
||++|-..|
T Consensus 212 gG~lv~~~~ 220 (336)
T 2b25_A 212 GGVCAVYVV 220 (336)
T ss_dssp EEEEEEEES
T ss_pred CcEEEEEeC
Confidence 999996444
|
| >2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A* | Back alignment and structure |
|---|
Probab=98.92 E-value=2e-09 Score=105.30 Aligned_cols=107 Identities=16% Similarity=0.161 Sum_probs=77.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++.+++++ +..|+++|+|..|+..|+-.+... ++ .+.
T Consensus 116 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vDis~~~l~~ar~~~~~~---------------~~---------~~~--- 168 (321)
T 2pt6_A 116 EPKNVLVVGGGDGGIIRELCKYKSVENIDICEIDETVIEVSKIYFKNI---------------SC---------GYE--- 168 (321)
T ss_dssp SCCEEEEEECTTCHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCTTT---------------SG---------GGG---
T ss_pred CCCEEEEEcCCccHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHhh---------------cc---------ccC---
Confidence 3569999999999999999998 578999999999998776221100 00 000
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeecc--CChhhH--HHHHHHHHHhccCCcEEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFI--DTAHNI--VEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFI--Dta~Ni--~~yi~~I~~~LKPGG~wIN 332 (397)
..++.++.+|+.+... ...++||+|++..+- ..+..+ .++++.++++|||||+++.
T Consensus 169 --------~~~v~~~~~D~~~~l~--~~~~~fDvIi~d~~~p~~~~~~l~~~~~l~~~~~~LkpgG~lv~ 228 (321)
T 2pt6_A 169 --------DKRVNVFIEDASKFLE--NVTNTYDVIIVDSSDPIGPAETLFNQNFYEKIYNALKPNGYCVA 228 (321)
T ss_dssp --------STTEEEEESCHHHHHH--HCCSCEEEEEEECCCSSSGGGGGSSHHHHHHHHHHEEEEEEEEE
T ss_pred --------CCcEEEEEccHHHHHh--hcCCCceEEEECCcCCCCcchhhhHHHHHHHHHHhcCCCcEEEE
Confidence 1237889999877421 124789999986542 122333 6899999999999999995
|
| >3a27_A TYW2, uncharacterized protein MJ1557; wybutosine modification, transferase; HET: SAM; 2.00A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=98.91 E-value=2.6e-09 Score=101.50 Aligned_cols=97 Identities=14% Similarity=0.105 Sum_probs=74.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++..+|+++- .|+|+|+|..|+..++..+.. + .+
T Consensus 119 ~~~~VLDlgcG~G~~s~~la~~~~~~~V~~vD~s~~av~~a~~n~~~----n----------------------~l---- 168 (272)
T 3a27_A 119 ENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKL----N----------------------KL---- 168 (272)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCSEEEEEECCHHHHHHHHHHHHH----T----------------------TC----
T ss_pred CCCEEEEecCcCCHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHH----c----------------------CC----
Confidence 567999999999999999999855 899999999999877632210 0 00
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
.++.++.||+.++ . . .+.||+|+...- .+..++++.+.+.|||||+++-
T Consensus 169 ---------~~~~~~~~d~~~~-~--~-~~~~D~Vi~d~p----~~~~~~l~~~~~~LkpgG~l~~ 217 (272)
T 3a27_A 169 ---------NNVIPILADNRDV-E--L-KDVADRVIMGYV----HKTHKFLDKTFEFLKDRGVIHY 217 (272)
T ss_dssp ---------SSEEEEESCGGGC-C--C-TTCEEEEEECCC----SSGGGGHHHHHHHEEEEEEEEE
T ss_pred ---------CCEEEEECChHHc-C--c-cCCceEEEECCc----ccHHHHHHHHHHHcCCCCEEEE
Confidence 1256889999886 3 1 468999976532 2556789999999999999883
|
| >2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.90 E-value=3e-09 Score=104.07 Aligned_cols=107 Identities=19% Similarity=0.219 Sum_probs=73.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
+..+||++|||+|.++.++++. +..|+++|+|..|+..|+--+... ++ .+.
T Consensus 108 ~~~~VLdIG~G~G~~~~~l~~~~~~~~v~~vDid~~~i~~Ar~~~~~~---------------~~---------~~~--- 160 (314)
T 2b2c_A 108 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFLPGM---------------SC---------GFS--- 160 (314)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHCTTT---------------SG---------GGG---
T ss_pred CCCEEEEEcCCcCHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHh---------------cc---------ccC---
Confidence 3569999999999999999988 468999999999998876321100 00 000
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeecc--CChhhH--HHHHHHHHHhccCCcEEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFI--DTAHNI--VEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFI--Dta~Ni--~~yi~~I~~~LKPGG~wIN 332 (397)
..++.++.+|..+... ...++||+|++..+- ..+..+ .++++.++++|||||+++.
T Consensus 161 --------~~rv~~~~~D~~~~l~--~~~~~fD~Ii~d~~~~~~~~~~l~t~~~l~~~~~~LkpgG~lv~ 220 (314)
T 2b2c_A 161 --------HPKLDLFCGDGFEFLK--NHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSS 220 (314)
T ss_dssp --------CTTEEEECSCHHHHHH--HCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEE
T ss_pred --------CCCEEEEEChHHHHHH--hcCCCceEEEEcCCCCCCcchhhhHHHHHHHHHhhcCCCeEEEE
Confidence 1237889999877422 124789999976532 112223 5899999999999999995
|
| >1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17 | Back alignment and structure |
|---|
Probab=98.90 E-value=2.3e-09 Score=102.46 Aligned_cols=107 Identities=17% Similarity=0.145 Sum_probs=76.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-G-f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|.++.+++++ | -.|+++|++..|+..|+--+... ++ ..
T Consensus 75 ~~~~VLdiG~G~G~~~~~l~~~~~~~~v~~vEid~~~v~~ar~~~~~~---------------~~---------~~---- 126 (275)
T 1iy9_A 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFLPSI---------------AG---------KL---- 126 (275)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHCHHH---------------HT---------TT----
T ss_pred CCCEEEEECCchHHHHHHHHhCCCCceEEEEECCHHHHHHHHHHhHhh---------------cc---------cc----
Confidence 4579999999999999999998 5 68999999999998877322100 00 00
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCC--hhh--HHHHHHHHHHhccCCcEEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHN--IVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDt--a~N--i~~yi~~I~~~LKPGG~wIN 332 (397)
...++.++.+|..+... ...++||+|++..+-.. +.. ..++++.++++|||||++|.
T Consensus 127 -------~~~rv~v~~~D~~~~l~--~~~~~fD~Ii~d~~~~~~~~~~l~~~~~~~~~~~~L~pgG~lv~ 187 (275)
T 1iy9_A 127 -------DDPRVDVQVDDGFMHIA--KSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVA 187 (275)
T ss_dssp -------TSTTEEEEESCSHHHHH--TCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEE
T ss_pred -------CCCceEEEECcHHHHHh--hCCCCeeEEEECCCCCCCcchhhhHHHHHHHHHHhcCCCcEEEE
Confidence 01247889999887432 12478999997543211 111 25899999999999999995
|
| >2p41_A Type II methyltransferase; vizier, viral enzymes involved in replication, dengue virus methyltransferase, structural genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP: c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A* 2p3l_A* 1r6a_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=9.1e-09 Score=100.21 Aligned_cols=109 Identities=7% Similarity=-0.025 Sum_probs=71.7
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeC----CHHHHHHHHhhhhcccccCcccccccccc
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEF----SYYMMICSSFILNHTETAGEWNIYPWIHS 248 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~----S~~ML~~s~fiLn~~~~~~~~~IyPfi~~ 248 (397)
.+.+.+++.+. .++.+|||+|||+|.++..||++| .|+|+|+ |..|+. .. .
T Consensus 70 KL~~i~~~~~~----~~g~~VLDlGcG~G~~s~~la~~~-~V~gvD~~~~~~~~~~~-------~~-~------------ 124 (305)
T 2p41_A 70 KLRWFVERNLV----TPEGKVVDLGCGRGGWSYYCGGLK-NVREVKGLTKGGPGHEE-------PI-P------------ 124 (305)
T ss_dssp HHHHHHHTTSS----CCCEEEEEETCTTSHHHHHHHTST-TEEEEEEECCCSTTSCC-------CC-C------------
T ss_pred HHHHHHHcCCC----CCCCEEEEEcCCCCHHHHHHHhcC-CEEEEeccccCchhHHH-------HH-H------------
Confidence 45555554221 256799999999999999999995 8999999 554420 00 0
Q ss_pred ccCCCCcccCccccccCCCCCCCCCCCCcceeEec-ccccccCCCCCCCCccEEEEeeccCCh------hhHHHHHHHHH
Q 015966 249 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGG-DFVEVYSDPSQVGAWDAVVTCFFIDTA------HNIVEYIEIIS 321 (397)
Q Consensus 249 ~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~G-DF~ely~~~~~~~~fD~VvT~FFIDta------~Ni~~yi~~I~ 321 (397)
.+... ..++.++++ |++++. .++||+|++..-..+. ......|+.+.
T Consensus 125 ----------~~~~~-----------~~~v~~~~~~D~~~l~-----~~~fD~V~sd~~~~~g~~~~d~~~~l~~L~~~~ 178 (305)
T 2p41_A 125 ----------MSTYG-----------WNLVRLQSGVDVFFIP-----PERCDTLLCDIGESSPNPTVEAGRTLRVLNLVE 178 (305)
T ss_dssp ----------CCSTT-----------GGGEEEECSCCTTTSC-----CCCCSEEEECCCCCCSSHHHHHHHHHHHHHHHH
T ss_pred ----------hhhcC-----------CCCeEEEeccccccCC-----cCCCCEEEECCccccCcchhhHHHHHHHHHHHH
Confidence 00000 123678888 887652 3689999985422211 11225788899
Q ss_pred HhccCCcEEEE
Q 015966 322 RILKDGGVWIN 332 (397)
Q Consensus 322 ~~LKPGG~wIN 332 (397)
++|||||.||-
T Consensus 179 ~~LkpGG~~v~ 189 (305)
T 2p41_A 179 NWLSNNTQFCV 189 (305)
T ss_dssp HHCCTTCEEEE
T ss_pred HHhCCCCEEEE
Confidence 99999999995
|
| >4dmg_A Putative uncharacterized protein TTHA1493; rRNA, methyltransferase, S-adenosyl-methionine, 23S ribosoma transferase; HET: SAM; 1.70A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.86 E-value=6.8e-09 Score=104.69 Aligned_cols=102 Identities=12% Similarity=0.099 Sum_probs=73.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|.++..+|+.|..|+|+|+|..|+..++..+.. + .+.
T Consensus 214 ~g~~VLDlg~GtG~~sl~~a~~ga~V~avDis~~al~~a~~n~~~----n----------------------g~~----- 262 (393)
T 4dmg_A 214 PGERVLDVYSYVGGFALRAARKGAYALAVDKDLEALGVLDQAALR----L----------------------GLR----- 262 (393)
T ss_dssp TTCEEEEESCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH----H----------------------TCC-----
T ss_pred CCCeEEEcccchhHHHHHHHHcCCeEEEEECCHHHHHHHHHHHHH----h----------------------CCC-----
Confidence 467999999999999999999999999999999999877632210 0 000
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--eccCCh-------hhHHHHHHHHHHhccCCcEEEE
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA-------HNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta-------~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
..+..+|..++... ..+.||+|+.. +|.... .+..++++.+.++|||||+++-
T Consensus 263 ---------~~~~~~D~~~~l~~--~~~~fD~Ii~dpP~f~~~~~~~~~~~~~~~~ll~~a~~~LkpGG~Lv~ 324 (393)
T 4dmg_A 263 ---------VDIRHGEALPTLRG--LEGPFHHVLLDPPTLVKRPEELPAMKRHLVDLVREALRLLAEEGFLWL 324 (393)
T ss_dssp ---------CEEEESCHHHHHHT--CCCCEEEEEECCCCCCSSGGGHHHHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred ---------CcEEEccHHHHHHH--hcCCCCEEEECCCcCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 12457888775321 12449999864 333222 3345778888999999999983
|
| >2h1r_A Dimethyladenosine transferase, putative; SGC toronto dimethyladenosine transferase, structural genomics, structural genomics consortium; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=98.83 E-value=1.5e-08 Score=97.86 Aligned_cols=95 Identities=19% Similarity=0.195 Sum_probs=66.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++-.+... .
T Consensus 42 ~~~~VLDiG~G~G~lt~~La~~~~~v~~vDi~~~~~~~a~~~~~~~--------------------------~------- 88 (299)
T 2h1r_A 42 SSDIVLEIGCGTGNLTVKLLPLAKKVITIDIDSRMISEVKKRCLYE--------------------------G------- 88 (299)
T ss_dssp TTCEEEEECCTTSTTHHHHTTTSSEEEEECSCHHHHHHHHHHHHHT--------------------------T-------
T ss_pred CcCEEEEEcCcCcHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHc--------------------------C-------
Confidence 5679999999999999999999999999999999998776322100 0
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEee--ccCChhhHHHHH---------------HHHHHhccCCc
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF--FIDTAHNIVEYI---------------EIISRILKDGG 328 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F--FIDta~Ni~~yi---------------~~I~~~LKPGG 328 (397)
..++.++.||+.++. ..+||+|++.. .+. .+.+...+ +.+.++|+|+|
T Consensus 89 ------~~~v~~~~~D~~~~~-----~~~~D~Vv~n~py~~~-~~~~~~ll~~~~~~~~~~l~~Q~e~a~rlla~~G 153 (299)
T 2h1r_A 89 ------YNNLEVYEGDAIKTV-----FPKFDVCTANIPYKIS-SPLIFKLISHRPLFKCAVLMFQKEFAERMLANVG 153 (299)
T ss_dssp ------CCCEEC----CCSSC-----CCCCSEEEEECCGGGH-HHHHHHHHHCSSCCSEEEEEEEHHHHHHHTCCTT
T ss_pred ------CCceEEEECchhhCC-----cccCCEEEEcCCcccc-cHHHHHHHhcCCccceeeehHHHHHHHHHhcCCC
Confidence 013677889987752 24799999863 333 33345555 55788999988
|
| >2cmg_A Spermidine synthase; transferase, putrescine aminopropyltransferase, spermidine biosynthesis, polyamine biosynthesis, SPEE; 2.0A {Helicobacter pylori} PDB: 2cmh_A | Back alignment and structure |
|---|
Probab=98.82 E-value=6.7e-09 Score=98.98 Aligned_cols=98 Identities=13% Similarity=0.057 Sum_probs=71.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+||++|||+|.++.++++.|-.|+++|++..|+..|+--+.. . ++ .+.
T Consensus 72 ~~~~VL~iG~G~G~~~~~ll~~~~~v~~veid~~~i~~ar~~~~~------------~---~~---------~~~----- 122 (262)
T 2cmg_A 72 ELKEVLIVDGFDLELAHQLFKYDTHIDFVQADEKILDSFISFFPH------------F---HE---------VKN----- 122 (262)
T ss_dssp CCCEEEEESSCCHHHHHHHTTSSCEEEEECSCHHHHGGGTTTSTT------------H---HH---------HHT-----
T ss_pred CCCEEEEEeCCcCHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHh------------h---cc---------ccC-----
Confidence 456999999999999999998887899999999998655411100 0 00 000
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
..++.++.+|..++. ++||+|+... -| ...+++.++++|||||+++.
T Consensus 123 ------~~rv~~~~~D~~~~~------~~fD~Ii~d~-~d----p~~~~~~~~~~L~pgG~lv~ 169 (262)
T 2cmg_A 123 ------NKNFTHAKQLLDLDI------KKYDLIFCLQ-EP----DIHRIDGLKRMLKEDGVFIS 169 (262)
T ss_dssp ------CTTEEEESSGGGSCC------CCEEEEEESS-CC----CHHHHHHHHTTEEEEEEEEE
T ss_pred ------CCeEEEEechHHHHH------hhCCEEEECC-CC----hHHHHHHHHHhcCCCcEEEE
Confidence 123778889987642 6799998752 12 23589999999999999996
|
| >2as0_A Hypothetical protein PH1915; RNA methyltransferase, structural genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: b.122.1.9 c.66.1.51 | Back alignment and structure |
|---|
Probab=98.81 E-value=8.3e-09 Score=102.80 Aligned_cols=106 Identities=15% Similarity=0.093 Sum_probs=76.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|.++..+|+.|. .|+|+|+|..|+..++..+.. + .
T Consensus 217 ~~~~VLDl~~G~G~~~~~la~~g~~~v~~vD~s~~~l~~a~~n~~~----n----------------------~------ 264 (396)
T 2as0_A 217 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKL----N----------------------G------ 264 (396)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH----T----------------------T------
T ss_pred CCCeEEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH----c----------------------C------
Confidence 457999999999999999999987 899999999999877632210 0 0
Q ss_pred CCCCCCCCCcceeEecccccccCC-CCCCCCccEEEEe--eccCCh-------hhHHHHHHHHHHhccCCcEEEE
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTC--FFIDTA-------HNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~-~~~~~~fD~VvT~--FFIDta-------~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
...++.++.+|+.++... ....++||+|+.. +|..+. .+..+++..+.++|||||+++-
T Consensus 265 ------~~~~v~~~~~d~~~~~~~~~~~~~~fD~Vi~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~ 333 (396)
T 2as0_A 265 ------VEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVT 333 (396)
T ss_dssp ------CGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred ------CCccceEEECCHHHHHHHHHhhCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 011367889998775310 0014689999874 333222 4456788999999999998874
|
| >1qam_A ERMC' methyltransferase; rRNA methyltransferase ERMC', cofactor analogs; 2.20A {Bacillus subtilis} SCOP: c.66.1.24 PDB: 1qan_A* 1qao_A* 1qaq_A* 2erc_A | Back alignment and structure |
|---|
Probab=98.79 E-value=3.1e-08 Score=92.78 Aligned_cols=53 Identities=11% Similarity=0.112 Sum_probs=44.0
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (397)
.+++.+.+.+.. .++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++
T Consensus 17 ~~~~~i~~~~~~---~~~~~VLDiG~G~G~lt~~l~~~~~~v~~vD~~~~~~~~a~ 69 (244)
T 1qam_A 17 HNIDKIMTNIRL---NEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTE 69 (244)
T ss_dssp HHHHHHHTTCCC---CTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHH
T ss_pred HHHHHHHHhCCC---CCCCEEEEEeCCchHHHHHHHHcCCeEEEEECCHHHHHHHH
Confidence 366666665532 25679999999999999999999999999999999997665
|
| >3giw_A Protein of unknown function DUF574; rossmann-fold protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 1.45A {Streptomyces avermitilis} PDB: 3go4_A* | Back alignment and structure |
|---|
Probab=98.78 E-value=2.3e-08 Score=97.09 Aligned_cols=172 Identities=13% Similarity=0.087 Sum_probs=104.5
Q ss_pred HHHHHHHhcccc--cChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCC--ChhHHHHHHc---CCeEEEEeCCHH
Q 015966 150 CIIRNIVRDWAA--EGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGL--GRLALEISHL---GFISQGNEFSYY 222 (397)
Q Consensus 150 stL~q~~RDWS~--eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGl--GRLa~eLA~~---Gf~V~GnD~S~~ 222 (397)
..-.++.+-|.. +...+-...+...+.+|... ....+|||+|||+ |....++|++ +..|+|+|.|..
T Consensus 43 ~~~~~~~~~~P~~~~~a~~nr~fl~rav~~l~~~------~g~~q~LDLGcG~pT~~~~~~la~~~~P~arVv~VD~sp~ 116 (277)
T 3giw_A 43 EAGDAMSREWPALPVHMRANRDWMNRAVAHLAKE------AGIRQFLDIGTGIPTSPNLHEIAQSVAPESRVVYVDNDPI 116 (277)
T ss_dssp HHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHT------SCCCEEEEESCCSCCSSCHHHHHHHHCTTCEEEEEECCHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhccc------cCCCEEEEeCCCCCcccHHHHHHHHHCCCCEEEEEeCChH
Confidence 344455555543 22222223444455555421 1235899999998 5566777764 789999999999
Q ss_pred HHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEeccccccc---CCCCCCCCcc
Q 015966 223 MMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVY---SDPSQVGAWD 299 (397)
Q Consensus 223 ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely---~~~~~~~~fD 299 (397)
||..|+-.+... ...++.++.+|+.++. ..+...+.||
T Consensus 117 mLa~Ar~~l~~~---------------------------------------~~~~~~~v~aD~~~~~~~l~~~~~~~~~D 157 (277)
T 3giw_A 117 VLTLSQGLLAST---------------------------------------PEGRTAYVEADMLDPASILDAPELRDTLD 157 (277)
T ss_dssp HHHTTHHHHCCC---------------------------------------SSSEEEEEECCTTCHHHHHTCHHHHTTCC
T ss_pred HHHHHHHHhccC---------------------------------------CCCcEEEEEecccChhhhhcccccccccC
Confidence 998776433110 0123788999998751 1010013444
Q ss_pred -----EEEEe---eccCChhhHHHHHHHHHHhccCCcEEEE--ecCCcc-h--------hhhccCCCCCccccCCHHHHH
Q 015966 300 -----AVVTC---FFIDTAHNIVEYIEIISRILKDGGVWIN--LGPLLY-H--------FADLYGQEDEMSIELSLEDVK 360 (397)
Q Consensus 300 -----~VvT~---FFIDta~Ni~~yi~~I~~~LKPGG~wIN--~GPLlY-h--------~~d~~g~~~~~~ieLS~EEl~ 360 (397)
+|+.+ .||....+...+|+++++.|+|||+++- +.+-.- + |.. .| .+ ....|.+||.
T Consensus 158 ~~~p~av~~~avLH~l~d~~~p~~~l~~l~~~L~PGG~Lvls~~~~d~~p~~~~~~~~~~~~-~g-~p--~~~rs~~ei~ 233 (277)
T 3giw_A 158 LTRPVALTVIAIVHFVLDEDDAVGIVRRLLEPLPSGSYLAMSIGTAEFAPQEVGRVAREYAA-RN-MP--MRLRTHAEAE 233 (277)
T ss_dssp TTSCCEEEEESCGGGSCGGGCHHHHHHHHHTTSCTTCEEEEEEECCTTSHHHHHHHHHHHHH-TT-CC--CCCCCHHHHH
T ss_pred cCCcchHHhhhhHhcCCchhhHHHHHHHHHHhCCCCcEEEEEeccCCCCHHHHHHHHHHHHh-cC-CC--CccCCHHHHH
Confidence 45544 3677665577899999999999999984 221100 0 111 12 22 2357999999
Q ss_pred HHHHhCCCEEEE
Q 015966 361 RVALHYGFEFEK 372 (397)
Q Consensus 361 ~ll~~~GFeii~ 372 (397)
+++. ||++++
T Consensus 234 ~~f~--Glelve 243 (277)
T 3giw_A 234 EFFE--GLELVE 243 (277)
T ss_dssp HTTT--TSEECT
T ss_pred HHhC--CCcccC
Confidence 9994 999876
|
| >3c0k_A UPF0064 protein YCCW; PUA domain, adoMet dependent methyltransferase fold; 2.00A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=98.76 E-value=1.5e-08 Score=100.97 Aligned_cols=107 Identities=11% Similarity=0.094 Sum_probs=76.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|.++..+|+.|. .|+|+|+|..|+..|+..+.. + .+ +
T Consensus 220 ~~~~VLDl~cG~G~~sl~la~~g~~~V~~vD~s~~al~~a~~n~~~----n----------------------gl--~-- 269 (396)
T 3c0k_A 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVEL----N----------------------KL--D-- 269 (396)
T ss_dssp TTCEEEEESCTTCSHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH----T----------------------TC--C--
T ss_pred CCCeEEEeeccCCHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH----c----------------------CC--C--
Confidence 456999999999999999999986 899999999999877632210 0 00 0
Q ss_pred CCCCCCCCCcceeEecccccccCC-CCCCCCccEEEEe--ecc-------CChhhHHHHHHHHHHhccCCcEEEE
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTC--FFI-------DTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~-~~~~~~fD~VvT~--FFI-------Dta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
..++.++.+|+.++... ....++||+|+.. +|. +......+.+..+.++|||||+++-
T Consensus 270 -------~~~v~~~~~D~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 337 (396)
T 3c0k_A 270 -------LSKAEFVRDDVFKLLRTYRDRGEKFDVIVMDPPKFVENKSQLMGACRGYKDINMLAIQLLNEGGILLT 337 (396)
T ss_dssp -------GGGEEEEESCHHHHHHHHHHTTCCEEEEEECCSSTTTCSSSSSCCCTHHHHHHHHHHHTEEEEEEEEE
T ss_pred -------ccceEEEECCHHHHHHHHHhcCCCCCEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 11367889998775320 0013689999875 222 2225577899999999999999883
|
| >3ajd_A Putative methyltransferase MJ0026; tRNA, M5C, rossmann fold, structural genomics, riken structu genomics/proteomics initiative; 1.27A {Methanocaldococcus jannaschii} PDB: 3a4t_A | Back alignment and structure |
|---|
Probab=98.75 E-value=1.7e-08 Score=95.67 Aligned_cols=133 Identities=15% Similarity=-0.012 Sum_probs=86.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc--C-CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--G-f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|..+..||++ | ..|+|+|+|..|+..++-.+... ++
T Consensus 83 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avD~~~~~l~~~~~~~~~~--------------------------g~--- 133 (274)
T 3ajd_A 83 EDDFILDMCAAPGGKTTHLAQLMKNKGTIVAVEISKTRTKALKSNINRM--------------------------GV--- 133 (274)
T ss_dssp TTCEEEETTCTTCHHHHHHHHHTTTCSEEEEEESCHHHHHHHHHHHHHT--------------------------TC---
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEECCCHHHHHHHHHHHHHh--------------------------CC---
Confidence 5679999999999999999984 5 78999999999998766322110 00
Q ss_pred CCCCCCCCCCCcceeEecccccccCC-CCCCCCccEEEEe--ec-cC---------------ChhhHHHHHHHHHHhccC
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTC--FF-ID---------------TAHNIVEYIEIISRILKD 326 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~-~~~~~~fD~VvT~--FF-ID---------------ta~Ni~~yi~~I~~~LKP 326 (397)
.++.++.+|+.++... ....+.||+|++. +. +- ......+.++.++++|||
T Consensus 134 ----------~~v~~~~~D~~~~~~~~~~~~~~fD~Vl~d~Pcs~~g~~~~~p~~~~~~~~~~~~~~~~~l~~~~~~Lkp 203 (274)
T 3ajd_A 134 ----------LNTIIINADMRKYKDYLLKNEIFFDKILLDAPCSGNIIKDKNRNVSEEDIKYCSLRQKELIDIGIDLLKK 203 (274)
T ss_dssp ----------CSEEEEESCHHHHHHHHHHTTCCEEEEEEEECCC------------HHHHTGGGTCHHHHHHHHHHHEEE
T ss_pred ----------CcEEEEeCChHhcchhhhhccccCCEEEEcCCCCCCcccccCCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 1367788998775310 0014689999875 11 11 012346789999999999
Q ss_pred CcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHH-hCCCEEEEE
Q 015966 327 GGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVAL-HYGFEFEKE 373 (397)
Q Consensus 327 GG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~-~~GFeii~e 373 (397)
||++|-...-+. -+=..+.+..+++ ..+|+++..
T Consensus 204 gG~lv~stcs~~-------------~~ene~~v~~~l~~~~~~~~~~~ 238 (274)
T 3ajd_A 204 DGELVYSTCSME-------------VEENEEVIKYILQKRNDVELIII 238 (274)
T ss_dssp EEEEEEEESCCC-------------TTSSHHHHHHHHHHCSSEEEECC
T ss_pred CCEEEEEECCCC-------------hHHhHHHHHHHHHhCCCcEEecC
Confidence 999984211110 0113455666664 457877653
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.6e-08 Score=108.89 Aligned_cols=105 Identities=12% Similarity=0.110 Sum_probs=77.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|.++..+|+.|.. |+|+|+|..||..++--+.. + .+.
T Consensus 539 ~g~~VLDlg~GtG~~sl~aa~~ga~~V~aVD~s~~al~~a~~N~~~----n----------------------gl~---- 588 (703)
T 3v97_A 539 KGKDFLNLFSYTGSATVHAGLGGARSTTTVDMSRTYLEWAERNLRL----N----------------------GLT---- 588 (703)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH----T----------------------TCC----
T ss_pred CCCcEEEeeechhHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHH----c----------------------CCC----
Confidence 4679999999999999999999986 99999999999877632210 0 000
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--ecc---------CChhhHHHHHHHHHHhccCCcEEEE
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFI---------DTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFI---------Dta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
..++.++++|..++.. ...++||+|+.. +|. +...+..+.++.+.++|||||+++-
T Consensus 589 -------~~~v~~i~~D~~~~l~--~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~~~ll~~a~~~LkpgG~L~~ 655 (703)
T 3v97_A 589 -------GRAHRLIQADCLAWLR--EANEQFDLIFIDPPTFSNSKRMEDAFDVQRDHLALMKDLKRLLRAGGTIMF 655 (703)
T ss_dssp -------STTEEEEESCHHHHHH--HCCCCEEEEEECCCSBC-------CCBHHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred -------ccceEEEecCHHHHHH--hcCCCccEEEECCccccCCccchhHHHHHHHHHHHHHHHHHhcCCCcEEEE
Confidence 0237889999887532 124789999874 332 2234566789999999999999993
|
| >2okc_A Type I restriction enzyme stysji M protein; NP_813429.1, N-6 DNA methylase, type I restriction enzyme ST protein; HET: SAM; 2.20A {Bacteroides thetaiotaomicron vpi-5482} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.74 E-value=4.2e-08 Score=99.50 Aligned_cols=120 Identities=16% Similarity=0.201 Sum_probs=80.1
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---------------CCeEEEEeCCHHHHHHHHhhhhcccc
Q 015966 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---------------GFISQGNEFSYYMMICSSFILNHTET 236 (397)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---------------Gf~V~GnD~S~~ML~~s~fiLn~~~~ 236 (397)
.++++.+.+.+.. ..+.+|||||||+|.+...+++. +..+.|+|++..|+..|+..+..
T Consensus 157 ~~v~~~mv~~l~~---~~~~~VlDpacGsG~fl~~~~~~l~~~~~~~~~~~~~~~~~i~G~Ei~~~~~~lA~~nl~l--- 230 (445)
T 2okc_A 157 RPLIQAMVDCINP---QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLYL--- 230 (445)
T ss_dssp HHHHHHHHHHHCC---CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHhCC---CCCCEEeccCCCcchHHHHHHHHHHHhcCCHHHHHhhcCeEEEEEeCCHHHHHHHHHHHHH---
Confidence 3455555554432 25679999999999999988864 46899999999999887732210
Q ss_pred cCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--eccCC-----
Q 015966 237 AGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDT----- 309 (397)
Q Consensus 237 ~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFIDt----- 309 (397)
+ ++. .....+..||++.... .++||+|+++ |....
T Consensus 231 ------~-----------------g~~-----------~~~~~i~~gD~l~~~~----~~~fD~Iv~NPPf~~~~~~~~~ 272 (445)
T 2okc_A 231 ------H-----------------GIG-----------TDRSPIVCEDSLEKEP----STLVDVILANPPFGTRPAGSVD 272 (445)
T ss_dssp ------T-----------------TCC-----------SSCCSEEECCTTTSCC----SSCEEEEEECCCSSCCCTTCCC
T ss_pred ------h-----------------CCC-----------cCCCCEeeCCCCCCcc----cCCcCEEEECCCCCCcccccch
Confidence 0 000 0024678888776422 3589999987 32211
Q ss_pred ----------hhhHHHHHHHHHHhccCCcEEEEecC
Q 015966 310 ----------AHNIVEYIEIISRILKDGGVWINLGP 335 (397)
Q Consensus 310 ----------a~Ni~~yi~~I~~~LKPGG~wIN~GP 335 (397)
...-..+++.+.++|||||+++-+-|
T Consensus 273 ~~~~~~~~~~~~~~~~fl~~~~~~Lk~gG~~a~V~p 308 (445)
T 2okc_A 273 INRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 308 (445)
T ss_dssp CCCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhHhhcCCCCcchHHHHHHHHHHHhccCCEEEEEEC
Confidence 01124789999999999999985444
|
| >2yx1_A Hypothetical protein MJ0883; methyl transferase, tRNA modification enzyme, transferase; HET: SFG; 2.20A {Methanocaldococcus jannaschii} PDB: 2zzn_A* 3ay0_A* 2zzm_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=2.1e-08 Score=98.24 Aligned_cols=120 Identities=11% Similarity=0.057 Sum_probs=84.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|.++.. |+.+..|+|+|+|..|+..++..+.. + .
T Consensus 195 ~~~~VLDlg~G~G~~~l~-a~~~~~V~~vD~s~~ai~~a~~n~~~----n----------------------~------- 240 (336)
T 2yx1_A 195 LNDVVVDMFAGVGPFSIA-CKNAKKIYAIDINPHAIELLKKNIKL----N----------------------K------- 240 (336)
T ss_dssp TTCEEEETTCTTSHHHHH-TTTSSEEEEEESCHHHHHHHHHHHHH----T----------------------T-------
T ss_pred CCCEEEEccCccCHHHHh-ccCCCEEEEEECCHHHHHHHHHHHHH----c----------------------C-------
Confidence 467999999999999999 98777899999999999877632210 0 0
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCCC
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQED 348 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~ 348 (397)
...++.++.+|+.++. ++||+|+. |......++++.+.++|||||+++-.. +.
T Consensus 241 -----l~~~v~~~~~D~~~~~------~~fD~Vi~----dpP~~~~~~l~~~~~~L~~gG~l~~~~-----~~------- 293 (336)
T 2yx1_A 241 -----LEHKIIPILSDVREVD------VKGNRVIM----NLPKFAHKFIDKALDIVEEGGVIHYYT-----IG------- 293 (336)
T ss_dssp -----CTTTEEEEESCGGGCC------CCEEEEEE----CCTTTGGGGHHHHHHHEEEEEEEEEEE-----EE-------
T ss_pred -----CCCcEEEEECChHHhc------CCCcEEEE----CCcHhHHHHHHHHHHHcCCCCEEEEEE-----ee-------
Confidence 1123778999987752 68999986 333334488999999999999887311 11
Q ss_pred CccccCCHHHHHHHHHhC-CCEEEEEe
Q 015966 349 EMSIELSLEDVKRVALHY-GFEFEKEK 374 (397)
Q Consensus 349 ~~~ieLS~EEl~~ll~~~-GFeii~e~ 374 (397)
.. .+++.+.+.+. ||++...+
T Consensus 294 ---~~--~~~~~~~l~~~~~~~i~~~~ 315 (336)
T 2yx1_A 294 ---KD--FDKAIKLFEKKCDCEVLEKR 315 (336)
T ss_dssp ---SS--SHHHHHHHHHHSEEEEEEEE
T ss_pred ---cC--chHHHHHHHHhcCCcEEEEE
Confidence 01 34555666665 78776543
|
| >2f8l_A Hypothetical protein LMO1582; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE SAM; 2.20A {Listeria monocytogenes} SCOP: c.66.1.45 | Back alignment and structure |
|---|
Probab=98.73 E-value=4.3e-08 Score=95.75 Aligned_cols=125 Identities=16% Similarity=0.142 Sum_probs=86.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcC-------CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccc
Q 015966 189 SPPACLVPGAGLGRLALEISHLG-------FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRP 261 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G-------f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~ 261 (397)
++.+|||||||+|.++..+++.+ ..++|+|++..|+..|+..+... .
T Consensus 130 ~~~~VlDp~cGsG~~l~~~~~~~~~~~~~~~~v~GiDi~~~~~~~a~~n~~~~--------------------------g 183 (344)
T 2f8l_A 130 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ--------------------------R 183 (344)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH--------------------------T
T ss_pred CCCEEEeCCCCccHHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHHHHhC--------------------------C
Confidence 46799999999999999998875 68999999999998877322100 0
Q ss_pred cccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--e-ccCChh--------------hH-HHHHHHHHHh
Q 015966 262 VSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--F-FIDTAH--------------NI-VEYIEIISRI 323 (397)
Q Consensus 262 v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--F-FIDta~--------------Ni-~~yi~~I~~~ 323 (397)
+ ++.+..||+.+.. ..+.||+|+++ | ++.... +. ..+++.+.+.
T Consensus 184 ~--------------~~~i~~~D~l~~~----~~~~fD~Ii~NPPfg~~~~~~~~~~~~~~~~~g~~~~~~~~l~~~~~~ 245 (344)
T 2f8l_A 184 Q--------------KMTLLHQDGLANL----LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRY 245 (344)
T ss_dssp C--------------CCEEEESCTTSCC----CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHT
T ss_pred C--------------CceEEECCCCCcc----ccCCccEEEECCCCCCcCchhhhhhccccCCCCcchHHHHHHHHHHHH
Confidence 0 1467888876532 24789999987 2 332211 12 2579999999
Q ss_pred ccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCE
Q 015966 324 LKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFE 369 (397)
Q Consensus 324 LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFe 369 (397)
|||||+++-+-|--+ +.. -..+++++.+.+.|+.
T Consensus 246 Lk~gG~~~~v~p~~~-~~~-----------~~~~~ir~~l~~~~~~ 279 (344)
T 2f8l_A 246 TKPGGYLFFLVPDAM-FGT-----------SDFAKVDKFIKKNGHI 279 (344)
T ss_dssp EEEEEEEEEEEEGGG-GGS-----------TTHHHHHHHHHHHEEE
T ss_pred hCCCCEEEEEECchh-cCC-----------chHHHHHHHHHhCCeE
Confidence 999999886443221 111 1348888888887773
|
| >3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=1.7e-07 Score=89.85 Aligned_cols=152 Identities=15% Similarity=0.072 Sum_probs=95.3
Q ss_pred ChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCcccc
Q 015966 163 GKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNI 242 (397)
Q Consensus 163 G~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~I 242 (397)
.-.||-.+|.++-..+.+. + ...+|||+|||+|-|+..++ -+..+.|.|+|..|+.+++..+...
T Consensus 85 STrerLp~ld~fY~~i~~~-~-----~p~~VLDlGCG~gpLal~~~-~~~~y~a~DId~~~i~~ar~~~~~~-------- 149 (253)
T 3frh_A 85 STKERLAELDTLYDFIFSA-E-----TPRRVLDIACGLNPLALYER-GIASVWGCDIHQGLGDVITPFAREK-------- 149 (253)
T ss_dssp HHHHHGGGHHHHHHHHTSS-C-----CCSEEEEETCTTTHHHHHHT-TCSEEEEEESBHHHHHHHHHHHHHT--------
T ss_pred CHHHHhhhHHHHHHHHhcC-C-----CCCeEEEecCCccHHHHHhc-cCCeEEEEeCCHHHHHHHHHHHHhc--------
Confidence 3457777777777766654 2 46799999999999999988 7789999999999999887544210
Q ss_pred ccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe---eccCChhhHHHHHHH
Q 015966 243 YPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEI 319 (397)
Q Consensus 243 yPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~---FFIDta~Ni~~yi~~ 319 (397)
+..+++..+|+...-. .+.||+|+.. -.|+...- .....
T Consensus 150 --------------------------------g~~~~~~v~D~~~~~~----~~~~DvvLllk~lh~LE~q~~--~~~~~ 191 (253)
T 3frh_A 150 --------------------------------DWDFTFALQDVLCAPP----AEAGDLALIFKLLPLLEREQA--GSAMA 191 (253)
T ss_dssp --------------------------------TCEEEEEECCTTTSCC----CCBCSEEEEESCHHHHHHHST--THHHH
T ss_pred --------------------------------CCCceEEEeecccCCC----CCCcchHHHHHHHHHhhhhch--hhHHH
Confidence 0126778888765422 4689999875 23332211 23447
Q ss_pred HHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 320 ISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 320 I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
+.+.|+++|++|++.- ....|.. ..++=.+++..+-.-...+.++.+.
T Consensus 192 ll~aL~~~~vvVsfPt-----ksl~Gr~--~gm~~~Y~~~~e~~~~~~~~~~~~~ 239 (253)
T 3frh_A 192 LLQSLNTPRMAVSFPT-----RSLGGRG--KGMEANYAAWFEGGLPAEFEIEDKK 239 (253)
T ss_dssp HHHHCBCSEEEEEEEC-----C-------------CHHHHHHHHSCTTEEEEEEE
T ss_pred HHHHhcCCCEEEEcCh-----HHhcCCC--cchhhHHHHHHHHHhhccchhhhhe
Confidence 7789999999999631 0111111 1344455444444335556666544
|
| >1yub_A Ermam, rRNA methyltransferase; MLS antibiotics; NMR {Streptococcus pneumoniae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=98.69 E-value=5.1e-09 Score=97.50 Aligned_cols=111 Identities=14% Similarity=0.184 Sum_probs=73.5
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~ 253 (397)
+++.+.+.+.. .++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++ +.
T Consensus 17 ~~~~i~~~~~~---~~~~~VLDiG~G~G~~~~~l~~~~~~v~~id~~~~~~~~a~-------~~---------------- 70 (245)
T 1yub_A 17 VLNQIIKQLNL---KETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSS-------EK---------------- 70 (245)
T ss_dssp THHHHHHHCCC---CSSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSS-------CT----------------
T ss_pred HHHHHHHhcCC---CCCCEEEEEeCCCCHHHHHHHHhCCeEEEEECCHHHHHHHH-------HH----------------
Confidence 34444444432 25679999999999999999999999999999999973221 00
Q ss_pred CcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--eccCChhhHHHHH--------------
Q 015966 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTAHNIVEYI-------------- 317 (397)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta~Ni~~yi-------------- 317 (397)
+. ...++.++.+|+.++.. + ..+.| .|+++ |++.+ .-+...+
T Consensus 71 --------~~----------~~~~v~~~~~D~~~~~~-~-~~~~f-~vv~n~Py~~~~-~~~~~~~~~~~~~~~~lm~q~ 128 (245)
T 1yub_A 71 --------LK----------LNTRVTLIHQDILQFQF-P-NKQRY-KIVGNIPYHLST-QIIKKVVFESRASDIYLIVEE 128 (245)
T ss_dssp --------TT----------TCSEEEECCSCCTTTTC-C-CSSEE-EEEEECCSSSCH-HHHHHHHHHCCCEEEEEEEES
T ss_pred --------hc----------cCCceEEEECChhhcCc-c-cCCCc-EEEEeCCccccH-HHHHHHHhCCCCCeEEEEeeH
Confidence 00 01237888999987532 1 12578 55555 45543 2233333
Q ss_pred HHHHHhccCCcEEEE
Q 015966 318 EIISRILKDGGVWIN 332 (397)
Q Consensus 318 ~~I~~~LKPGG~wIN 332 (397)
+.+.++|||||.+.-
T Consensus 129 e~a~rll~~~G~l~v 143 (245)
T 1yub_A 129 GFYKRTLDIHRTLGL 143 (245)
T ss_dssp SHHHHHHCGGGSHHH
T ss_pred HHHHHHhCCCCchhh
Confidence 779999999998763
|
| >1wxx_A TT1595, hypothetical protein TTHA1280; thermus thermophillus, methyltransferase, adoMet, structural genomics; 1.80A {Thermus thermophilus} SCOP: b.122.1.9 c.66.1.51 PDB: 1wxw_A 2cww_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=2.7e-08 Score=98.85 Aligned_cols=104 Identities=13% Similarity=0.014 Sum_probs=74.9
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCC
Q 015966 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHP 269 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p 269 (397)
+.+|||+|||+|.++..+|+.+..|+|+|+|..|+..++..+.. + .
T Consensus 210 ~~~VLDlg~G~G~~~~~la~~~~~v~~vD~s~~~~~~a~~n~~~----n----------------------~-------- 255 (382)
T 1wxx_A 210 GERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARL----N----------------------G-------- 255 (382)
T ss_dssp EEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHH----T----------------------T--------
T ss_pred CCeEEEeeeccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHH----c----------------------C--------
Confidence 45899999999999999999988899999999999877632210 0 0
Q ss_pred CCCCCCCcceeEecccccccCC-CCCCCCccEEEEe--eccCC-------hhhHHHHHHHHHHhccCCcEEEE
Q 015966 270 ASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTC--FFIDT-------AHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 270 ~~~~~~~~ls~~~GDF~ely~~-~~~~~~fD~VvT~--FFIDt-------a~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
. .++.++.+|+.++... ....++||+|+.. +|..+ .....++++.+.++|||||+++-
T Consensus 256 ----~-~~~~~~~~d~~~~~~~~~~~~~~fD~Ii~dpP~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~l~~ 323 (382)
T 1wxx_A 256 ----L-GNVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILAT 323 (382)
T ss_dssp ----C-TTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred ----C-CCceEEECCHHHHHHHHHhcCCCeeEEEECCCCCCCChhHHHHHHHHHHHHHHHHHHhcCCCCEEEE
Confidence 0 1267888998775320 0014689999863 23221 14456788999999999999884
|
| >2xyq_A Putative 2'-O-methyl transferase; transferase-viral protein complex, rossman fold; HET: SAH; 2.00A {Sars coronavirus} PDB: 2xyv_A* 2xyr_A* | Back alignment and structure |
|---|
Probab=98.66 E-value=5.3e-08 Score=94.77 Aligned_cols=111 Identities=14% Similarity=0.141 Sum_probs=75.9
Q ss_pred CCCeEEEecC------CCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCc
Q 015966 189 SPPACLVPGA------GLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQL 259 (397)
Q Consensus 189 ~~~rVLvPGC------GlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~ql 259 (397)
++.+|||+|| |+|. ..++++ +..|+|+|+|.. + .
T Consensus 63 ~g~~VLDLGcGsg~~~GpGs--~~~a~~~~~~~~V~gvDis~~-v-------~--------------------------- 105 (290)
T 2xyq_A 63 YNMRVIHFGAGSDKGVAPGT--AVLRQWLPTGTLLVDSDLNDF-V-------S--------------------------- 105 (290)
T ss_dssp TTCEEEEESCCCTTSBCHHH--HHHHHHSCTTCEEEEEESSCC-B-------C---------------------------
T ss_pred CCCEEEEeCCCCCCCCCcHH--HHHHHHcCCCCEEEEEECCCC-C-------C---------------------------
Confidence 6779999999 4466 333433 479999999984 0 0
Q ss_pred cccccCCCCCCCCCCCCccee-EecccccccCCCCCCCCccEEEEeecc--------CC---hhhHHHHHHHHHHhccCC
Q 015966 260 RPVSIPDIHPASAGITEGFSM-CGGDFVEVYSDPSQVGAWDAVVTCFFI--------DT---AHNIVEYIEIISRILKDG 327 (397)
Q Consensus 260 r~v~iPDv~p~~~~~~~~ls~-~~GDF~ely~~~~~~~~fD~VvT~FFI--------Dt---a~Ni~~yi~~I~~~LKPG 327 (397)
++.+ ++||+.++.. .++||+|++.... +. ..-+.+.++.++++||||
T Consensus 106 -----------------~v~~~i~gD~~~~~~----~~~fD~Vvsn~~~~~~g~~~~d~~~~~~l~~~~l~~a~r~LkpG 164 (290)
T 2xyq_A 106 -----------------DADSTLIGDCATVHT----ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALG 164 (290)
T ss_dssp -----------------SSSEEEESCGGGCCC----SSCEEEEEECCCCCC---CCSCCCCCCTHHHHHHHHHHHHEEEE
T ss_pred -----------------CCEEEEECccccCCc----cCcccEEEEcCCccccccccccccchHHHHHHHHHHHHHhcCCC
Confidence 1456 8899887532 3689999986431 11 222457899999999999
Q ss_pred cEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 328 GVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 328 G~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
|.++-.. + .. -..+++.+++++.||..++.
T Consensus 165 G~~v~~~---~--~~-----------~~~~~l~~~l~~~GF~~v~~ 194 (290)
T 2xyq_A 165 GSIAVKI---T--EH-----------SWNADLYKLMGHFSWWTAFV 194 (290)
T ss_dssp EEEEEEE---C--SS-----------SCCHHHHHHHTTEEEEEEEE
T ss_pred cEEEEEE---e--cc-----------CCHHHHHHHHHHcCCcEEEE
Confidence 9999521 1 10 12358999999999976553
|
| >3ldu_A Putative methylase; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE GTP; 1.70A {Clostridium difficile} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.4e-07 Score=94.72 Aligned_cols=108 Identities=14% Similarity=0.178 Sum_probs=77.0
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC----------------------------------------Ce
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG----------------------------------------FI 213 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G----------------------------------------f~ 213 (397)
+...|..... ..++.+|||||||+|.++.++|..| ..
T Consensus 183 lAa~ll~~~~---~~~~~~vlDp~CGSGt~lieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~ 259 (385)
T 3ldu_A 183 LAAGLIYLTP---WKAGRVLVDPMCGSGTILIEAAMIGINMAPGLNREFISEKWRTLDKKIWWDVRKDAFNKIDNESKFK 259 (385)
T ss_dssp HHHHHHHTSC---CCTTSCEEETTCTTCHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHSCCSCCCC
T ss_pred HHHHHHHhhC---CCCCCeEEEcCCCCCHHHHHHHHHHhhhCCCcccccchhhcccCCHHHHHHHHHHHHHHhhccCCce
Confidence 4445544433 1256789999999999999999886 45
Q ss_pred EEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCC
Q 015966 214 SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPS 293 (397)
Q Consensus 214 V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~ 293 (397)
|+|+|+|..|+..|+..+... + ....+.+.++|+.++..
T Consensus 260 V~GvDid~~ai~~Ar~Na~~~--------------------------g------------l~~~i~~~~~D~~~l~~--- 298 (385)
T 3ldu_A 260 IYGYDIDEESIDIARENAEIA--------------------------G------------VDEYIEFNVGDATQFKS--- 298 (385)
T ss_dssp EEEEESCHHHHHHHHHHHHHH--------------------------T------------CGGGEEEEECCGGGCCC---
T ss_pred EEEEECCHHHHHHHHHHHHHc--------------------------C------------CCCceEEEECChhhcCc---
Confidence 999999999999887432211 0 11237889999988642
Q ss_pred CCCCccEEEEe--ec--cCChhhHHHHHHHHHHhccC
Q 015966 294 QVGAWDAVVTC--FF--IDTAHNIVEYIEIISRILKD 326 (397)
Q Consensus 294 ~~~~fD~VvT~--FF--IDta~Ni~~yi~~I~~~LKP 326 (397)
.++||+|+++ |. +....++....+.+.+.||+
T Consensus 299 -~~~~D~Iv~NPPyg~rl~~~~~l~~ly~~lg~~lk~ 334 (385)
T 3ldu_A 299 -EDEFGFIITNPPYGERLEDKDSVKQLYKELGYAFRK 334 (385)
T ss_dssp -SCBSCEEEECCCCCCSHHHHHHHHHHHHHHHHHHHT
T ss_pred -CCCCcEEEECCCCcCccCCHHHHHHHHHHHHHHHhh
Confidence 3689999996 43 33345677788888888887
|
| >3k0b_A Predicted N6-adenine-specific DNA methylase; methylase,PF01170, putative RNA methylase, PSI,MCSG, structu genomics; 1.50A {Listeria monocytogenes str} | Back alignment and structure |
|---|
Probab=98.60 E-value=1.9e-07 Score=94.05 Aligned_cols=101 Identities=10% Similarity=0.112 Sum_probs=73.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe----------------------------------------EEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFI----------------------------------------SQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~----------------------------------------V~GnD~S~~ML~~s~ 228 (397)
++..||||+||+|.++.|.|..+.+ |+|+|+|..|+..|+
T Consensus 201 ~~~~vlDp~CGSGt~~ieaa~~~~~~apg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~V~GvDid~~al~~Ar 280 (393)
T 3k0b_A 201 PDRPFYDPVCGSGTIPIEAALIGQNIAPGFNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAK 280 (393)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTSCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEcCCCCCHHHHHHHHHhcCcCCCccccchhhccccCCHHHHHHHHHHHHHhhcccCCceEEEEECCHHHHHHHH
Confidence 5678999999999999999987653 999999999999887
Q ss_pred hhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--ec
Q 015966 229 FILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FF 306 (397)
Q Consensus 229 fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FF 306 (397)
--+... .....+.+.++|+.++.. .++||+|++. |.
T Consensus 281 ~Na~~~--------------------------------------gl~~~I~~~~~D~~~~~~----~~~fD~Iv~NPPYg 318 (393)
T 3k0b_A 281 QNAVEA--------------------------------------GLGDLITFRQLQVADFQT----EDEYGVVVANPPYG 318 (393)
T ss_dssp HHHHHT--------------------------------------TCTTCSEEEECCGGGCCC----CCCSCEEEECCCCC
T ss_pred HHHHHc--------------------------------------CCCCceEEEECChHhCCC----CCCCCEEEECCCCc
Confidence 322110 011237889999988632 3589999998 54
Q ss_pred c--CChhhHHHHHHHHHHhccC--CcEEE
Q 015966 307 I--DTAHNIVEYIEIISRILKD--GGVWI 331 (397)
Q Consensus 307 I--Dta~Ni~~yi~~I~~~LKP--GG~wI 331 (397)
. .....+.+..+.+.+.||+ ||...
T Consensus 319 ~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 347 (393)
T 3k0b_A 319 ERLEDEEAVRQLYREMGIVYKRMPTWSVY 347 (393)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHTCTTCEEE
T ss_pred cccCCchhHHHHHHHHHHHHhcCCCCEEE
Confidence 3 2334566777778888876 55433
|
| >2yxl_A PH0851 protein, 450AA long hypothetical FMU protein; FMU-homolog, methyltransferase, structural genomics, NPPSFA; HET: SFG; 2.55A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.60 E-value=4e-07 Score=92.67 Aligned_cols=131 Identities=14% Similarity=0.070 Sum_probs=85.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc--C-CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--G-f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||.|..+..||++ | ..|+|+|+|..|+..++-.+... ++
T Consensus 259 ~g~~VLDlgaG~G~~t~~la~~~~~~~~v~a~D~s~~~l~~~~~~~~~~--------------------------g~--- 309 (450)
T 2yxl_A 259 PGETVVDLAAAPGGKTTHLAELMKNKGKIYAFDVDKMRMKRLKDFVKRM--------------------------GI--- 309 (450)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHT--------------------------TC---
T ss_pred CcCEEEEeCCCccHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHc--------------------------CC---
Confidence 5679999999999999999985 3 68999999999998766332110 00
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEE---ee---ccCCh---------hhH-------HHHHHHHHHh
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---CF---FIDTA---------HNI-------VEYIEIISRI 323 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT---~F---FIDta---------~Ni-------~~yi~~I~~~ 323 (397)
.++.++.+|+.++.. ....+.||+|+. |. .+... .++ .+.++.+.++
T Consensus 310 ----------~~v~~~~~D~~~~~~-~~~~~~fD~Vl~D~Pcsg~g~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~ 378 (450)
T 2yxl_A 310 ----------KIVKPLVKDARKAPE-IIGEEVADKVLLDAPCTSSGTIGKNPELRWRLREDKINEMSQLQRELLESAARL 378 (450)
T ss_dssp ----------CSEEEECSCTTCCSS-SSCSSCEEEEEEECCCCCGGGTTTSTTHHHHCCTTSHHHHHHHHHHHHHHHHTT
T ss_pred ----------CcEEEEEcChhhcch-hhccCCCCEEEEcCCCCCCeeeccChhhhhhCCHHHHHHHHHHHHHHHHHHHHh
Confidence 126678888876521 012367999996 21 12211 222 5689999999
Q ss_pred ccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhC-CCEEEE
Q 015966 324 LKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHY-GFEFEK 372 (397)
Q Consensus 324 LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~-GFeii~ 372 (397)
|||||++|-...-+. -+=..+.+..++++. ||+++.
T Consensus 379 LkpGG~lvy~tcs~~-------------~~ene~~v~~~l~~~~~~~~~~ 415 (450)
T 2yxl_A 379 VKPGGRLLYTTCSIF-------------KEENEKNIRWFLNVHPEFKLVP 415 (450)
T ss_dssp EEEEEEEEEEESCCC-------------GGGTHHHHHHHHHHCSSCEECC
T ss_pred cCCCcEEEEEeCCCC-------------hhhHHHHHHHHHHhCCCCEEee
Confidence 999999983111100 011345667777765 788765
|
| >3ldg_A Putative uncharacterized protein SMU.472; YPSC, methyltransferase, transferase; HET: SAH; 1.96A {Streptococcus mutans} | Back alignment and structure |
|---|
Probab=98.55 E-value=6.6e-07 Score=90.00 Aligned_cols=101 Identities=9% Similarity=0.093 Sum_probs=76.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe----------------------------------------EEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFI----------------------------------------SQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~----------------------------------------V~GnD~S~~ML~~s~ 228 (397)
++..||||+||+|.++.|.|..+.+ |+|+|+|..|+..|+
T Consensus 194 ~~~~llDp~CGSGt~lIEAa~~a~~iapg~~R~f~f~~w~~~~~~~w~~~~~~a~~~~~~~~~~~v~GvDid~~al~~Ar 273 (384)
T 3ldg_A 194 PDKPFVDPTCGSGTFCIEAAMIGMNIAPGFNRDFAFEEWPWVDEALVTRVRNEADEQADYDIQLDISGFDFDGRMVEIAR 273 (384)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCGGGGCTTSCHHHHHHHHHHHHHHCCTTCCCCEEEEESCHHHHHHHH
T ss_pred CCCeEEEeCCcCCHHHHHHHHHhcCcCCCccccchhhhhccCCHHHHHHHHHHHHHhhhccCCceEEEEECCHHHHHHHH
Confidence 5678999999999999999987643 999999999999887
Q ss_pred hhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--ec
Q 015966 229 FILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FF 306 (397)
Q Consensus 229 fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FF 306 (397)
-.+... .....+.+.++|+.++.. ...||+|+++ |-
T Consensus 274 ~Na~~~--------------------------------------gl~~~I~~~~~D~~~l~~----~~~fD~Iv~NPPYG 311 (384)
T 3ldg_A 274 KNAREV--------------------------------------GLEDVVKLKQMRLQDFKT----NKINGVLISNPPYG 311 (384)
T ss_dssp HHHHHT--------------------------------------TCTTTEEEEECCGGGCCC----CCCSCEEEECCCCT
T ss_pred HHHHHc--------------------------------------CCCCceEEEECChHHCCc----cCCcCEEEECCchh
Confidence 332110 111237889999988632 3589999998 54
Q ss_pred --cCChhhHHHHHHHHHHhccC--CcEEE
Q 015966 307 --IDTAHNIVEYIEIISRILKD--GGVWI 331 (397)
Q Consensus 307 --IDta~Ni~~yi~~I~~~LKP--GG~wI 331 (397)
+....++.+..+.+.+.||+ ||...
T Consensus 312 ~rl~~~~~l~~ly~~lg~~lk~~~g~~~~ 340 (384)
T 3ldg_A 312 ERLLDDKAVDILYNEMGETFAPLKTWSQF 340 (384)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTCTTSEEE
T ss_pred hccCCHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 55556788888888888887 55443
|
| >2jjq_A Uncharacterized RNA methyltransferase pyrab10780; metal-binding, tRNA methyltransferase, S-adenosyl-L-methionine, iron, 4Fe-4S, iron-sulfur; HET: SAH; 1.8A {Pyrococcus abyssi} PDB: 2vs1_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=6.1e-07 Score=91.21 Aligned_cols=94 Identities=13% Similarity=0.140 Sum_probs=67.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|.++..||+.|..|+|+|+|..|+..|+..+.. + .
T Consensus 290 ~~~~VLDlgcG~G~~sl~la~~~~~V~gvD~s~~ai~~A~~n~~~----n----------------------g------- 336 (425)
T 2jjq_A 290 EGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEI----N----------------------N------- 336 (425)
T ss_dssp CSSEEEEETCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH----H----------------------T-------
T ss_pred CCCEEEEeeccchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHH----c----------------------C-------
Confidence 457999999999999999999999999999999999877632210 0 0
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChh-hH-HHHHHHHHHhccCCcEEEE
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH-NI-VEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~-Ni-~~yi~~I~~~LKPGG~wIN 332 (397)
. . +.+..+|+.++.. .+||+|+.. ... .+ ...++.+. .|||||+++-
T Consensus 337 -----l-~-v~~~~~d~~~~~~-----~~fD~Vv~d----PPr~g~~~~~~~~l~-~l~p~givyv 385 (425)
T 2jjq_A 337 -----V-D-AEFEVASDREVSV-----KGFDTVIVD----PPRAGLHPRLVKRLN-REKPGVIVYV 385 (425)
T ss_dssp -----C-C-EEEEECCTTTCCC-----TTCSEEEEC----CCTTCSCHHHHHHHH-HHCCSEEEEE
T ss_pred -----C-c-EEEEECChHHcCc-----cCCCEEEEc----CCccchHHHHHHHHH-hcCCCcEEEE
Confidence 0 1 5678899887632 289999873 221 11 13555554 4999998773
|
| >3m4x_A NOL1/NOP2/SUN family protein; mtase domain, PUA domain, RRM motif, transferase; 2.28A {Enterococcus faecium} | Back alignment and structure |
|---|
Probab=98.52 E-value=4e-07 Score=93.77 Aligned_cols=130 Identities=16% Similarity=0.067 Sum_probs=86.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|..+..||++ +-.|+|+|+|..|+..++-.+... ++
T Consensus 105 ~g~~VLDlcaGpGgkt~~lA~~~~~~g~V~AvDis~~rl~~~~~n~~r~--------------------------g~--- 155 (456)
T 3m4x_A 105 PGEKVLDLCAAPGGKSTQLAAQMKGKGLLVTNEIFPKRAKILSENIERW--------------------------GV--- 155 (456)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEECSSHHHHHHHHHHHHHH--------------------------TC---
T ss_pred CCCEEEEECCCcCHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHc--------------------------CC---
Confidence 5779999999999999999986 358999999999998766322111 00
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe---e---ccCChhhH----------------HHHHHHHHHh
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---F---FIDTAHNI----------------VEYIEIISRI 323 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~---F---FIDta~Ni----------------~~yi~~I~~~ 323 (397)
.++.++.+|..++.. ...+.||+|+.- . .+...+++ .+.|+.+.++
T Consensus 156 ----------~nv~v~~~Da~~l~~--~~~~~FD~Il~DaPCSg~G~~rr~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~ 223 (456)
T 3m4x_A 156 ----------SNAIVTNHAPAELVP--HFSGFFDRIVVDAPCSGEGMFRKDPNAIKEWTEESPLYCQKRQQEILSSAIKM 223 (456)
T ss_dssp ----------SSEEEECCCHHHHHH--HHTTCEEEEEEECCCCCGGGTTTCHHHHHHCCTTHHHHHHHHHHHHHHHHHHT
T ss_pred ----------CceEEEeCCHHHhhh--hccccCCEEEECCCCCCccccccCHHHhhhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 126678888877531 114789999862 1 11111111 2679999999
Q ss_pred ccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 324 LKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 324 LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
|||||++|-.. -.+ .-+=..+.+..++++.||+++.
T Consensus 224 LkpGG~LvYsT-Cs~------------~~eEne~vv~~~l~~~~~~l~~ 259 (456)
T 3m4x_A 224 LKNKGQLIYST-CTF------------APEENEEIISWLVENYPVTIEE 259 (456)
T ss_dssp EEEEEEEEEEE-SCC------------CGGGTHHHHHHHHHHSSEEEEC
T ss_pred cCCCcEEEEEE-eec------------ccccCHHHHHHHHHhCCCEEEe
Confidence 99999998210 000 0122456677888888888765
|
| >3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=5.6e-07 Score=87.35 Aligned_cols=153 Identities=12% Similarity=0.028 Sum_probs=100.6
Q ss_pred ChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCcc
Q 015966 163 GKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEW 240 (397)
Q Consensus 163 G~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~ 240 (397)
.-.||-.+|.++-..+.+..+ ...+|||+|||+|=|+.-++.. ...+.|+|++..|+.+++-.+...
T Consensus 111 STreRLp~lD~fY~~i~~~i~-----~p~~VLDLGCG~GpLAl~~~~~~p~a~y~a~DId~~~le~a~~~l~~~------ 179 (281)
T 3lcv_B 111 STRERLPHLDEFYRELFRHLP-----RPNTLRDLACGLNPLAAPWMGLPAETVYIASDIDARLVGFVDEALTRL------ 179 (281)
T ss_dssp HHHHHGGGHHHHHHHHGGGSC-----CCSEEEETTCTTGGGCCTTTTCCTTCEEEEEESBHHHHHHHHHHHHHT------
T ss_pred CHHHHhHhHHHHHHHHHhccC-----CCceeeeeccCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhc------
Confidence 356888888888887777764 3569999999999999999887 357999999999999887544210
Q ss_pred ccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHH----H
Q 015966 241 NIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVE----Y 316 (397)
Q Consensus 241 ~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~----y 316 (397)
+ -..++..+|+..-- ..+.||+|+.. .+.+-+.+ .
T Consensus 180 --------------------g--------------~~~~~~v~D~~~~~----p~~~~DvaL~l---kti~~Le~q~kg~ 218 (281)
T 3lcv_B 180 --------------------N--------------VPHRTNVADLLEDR----LDEPADVTLLL---KTLPCLETQQRGS 218 (281)
T ss_dssp --------------------T--------------CCEEEEECCTTTSC----CCSCCSEEEET---TCHHHHHHHSTTH
T ss_pred --------------------C--------------CCceEEEeeecccC----CCCCcchHHHH---HHHHHhhhhhhHH
Confidence 0 11566777876532 25889999874 33332221 2
Q ss_pred HHHHHHhccCCcEEEEecCCcchhhhccCCCCCcccc-CCHHHHHHHHHhCCCEEEEEe
Q 015966 317 IEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIE-LSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 317 i~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ie-LS~EEl~~ll~~~GFeii~e~ 374 (397)
.-.+.+.|+|||++||+.- ....|..+ .++ .=.+..++.+...|+.+.+..
T Consensus 219 g~~ll~aL~~~~vvVSfp~-----ksl~Grs~--gm~~~Y~~~~e~~~~~~g~~~~~~~ 270 (281)
T 3lcv_B 219 GWEVIDIVNSPNIVVTFPT-----KSLGQRSK--GMFQNYSQSFESQARERSCRIQRLE 270 (281)
T ss_dssp HHHHHHHSSCSEEEEEEEC-----C---------CHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred HHHHHHHhCCCCEEEeccc-----hhhcCCCc--chhhHHHHHHHHHHHhcCCceeeee
Confidence 3389999999999999532 00111111 222 223555666777788666543
|
| >1sqg_A SUN protein, FMU protein; rossmann-fold, mixed beta sheet, methyltransferase-fold, RNA-binding domain; 1.65A {Escherichia coli} SCOP: a.79.1.3 c.66.1.38 PDB: 1sqf_A | Back alignment and structure |
|---|
Probab=98.49 E-value=3.4e-07 Score=92.39 Aligned_cols=130 Identities=15% Similarity=0.050 Sum_probs=84.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
++.+|||+|||+|..+..||+++ ..|+|+|+|..|+..++-.+... ++
T Consensus 246 ~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~~~~~l~~~~~~~~~~--------------------------g~---- 295 (429)
T 1sqg_A 246 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNLKRL--------------------------GM---- 295 (429)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHHHHT--------------------------TC----
T ss_pred CcCeEEEECCCchHHHHHHHHHcCCCEEEEECCCHHHHHHHHHHHHHc--------------------------CC----
Confidence 56799999999999999999986 58999999999997665322110 00
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEE---ee---ccC---------ChhhH-------HHHHHHHHHhc
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---CF---FID---------TAHNI-------VEYIEIISRIL 324 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT---~F---FID---------ta~Ni-------~~yi~~I~~~L 324 (397)
++.++.+|+.++... ...+.||+|+. |. .+. +..++ .+.++.+.++|
T Consensus 296 ----------~~~~~~~D~~~~~~~-~~~~~fD~Vl~D~Pcsg~g~~~~~p~~~~~~~~~~~~~l~~~q~~~L~~a~~~L 364 (429)
T 1sqg_A 296 ----------KATVKQGDGRYPSQW-CGEQQFDRILLDAPCSATGVIRRHPDIKWLRRDRDIPELAQLQSEILDAIWPHL 364 (429)
T ss_dssp ----------CCEEEECCTTCTHHH-HTTCCEEEEEEECCCCCGGGTTTCTTHHHHCCTTHHHHHHHHHHHHHHHHGGGE
T ss_pred ----------CeEEEeCchhhchhh-cccCCCCEEEEeCCCCcccccCCCcchhhcCCHHHHHHHHHHHHHHHHHHHHhc
Confidence 145677887764210 11368999986 32 121 11222 47799999999
Q ss_pred cCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHh-CCCEEEE
Q 015966 325 KDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALH-YGFEFEK 372 (397)
Q Consensus 325 KPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~-~GFeii~ 372 (397)
||||++|-...-+.. +=..+.+..++++ -+|+++.
T Consensus 365 kpGG~lvystcs~~~-------------~ene~~v~~~l~~~~~~~~~~ 400 (429)
T 1sqg_A 365 KTGGTLVYATCSVLP-------------EENSLQIKAFLQRTADAELCE 400 (429)
T ss_dssp EEEEEEEEEESCCCG-------------GGTHHHHHHHHHHCTTCEECS
T ss_pred CCCCEEEEEECCCCh-------------hhHHHHHHHHHHhCCCCEEeC
Confidence 999999842111110 1123566666665 4787764
|
| >3gru_A Dimethyladenosine transferase; rossman fold, ribosomal assem adenosyl-L-methionine, rRNA, methyltransferase, RNA-binding processing; HET: AMP; 1.60A {Methanocaldococcus jannaschii} PDB: 3grr_A* 3grv_A* 3gry_A* 3fyd_A 3fyc_A* | Back alignment and structure |
|---|
Probab=98.48 E-value=6.2e-07 Score=87.29 Aligned_cols=84 Identities=14% Similarity=0.038 Sum_probs=61.9
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~ 253 (397)
+++.+.+.... .++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++-.+..
T Consensus 38 i~~~Iv~~l~~---~~~~~VLEIG~G~G~lT~~La~~~~~V~aVEid~~li~~a~~~~~~-------------------- 94 (295)
T 3gru_A 38 FVNKAVESANL---TKDDVVLEIGLGKGILTEELAKNAKKVYVIEIDKSLEPYANKLKEL-------------------- 94 (295)
T ss_dssp HHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCGGGHHHHHHHHHH--------------------
T ss_pred HHHHHHHhcCC---CCcCEEEEECCCchHHHHHHHhcCCEEEEEECCHHHHHHHHHHhcc--------------------
Confidence 44444444432 2567999999999999999999999999999999999876622210
Q ss_pred CcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe
Q 015966 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC 304 (397)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~ 304 (397)
..++.++.||+.++.. ....||+|+.+
T Consensus 95 ---------------------~~~v~vi~gD~l~~~~---~~~~fD~Iv~N 121 (295)
T 3gru_A 95 ---------------------YNNIEIIWGDALKVDL---NKLDFNKVVAN 121 (295)
T ss_dssp ---------------------CSSEEEEESCTTTSCG---GGSCCSEEEEE
T ss_pred ---------------------CCCeEEEECchhhCCc---ccCCccEEEEe
Confidence 0137889999987532 23579999977
|
| >1uwv_A 23S rRNA (uracil-5-)-methyltransferase RUMA; RNA modification, iron-sulfur cluster, RNA processing; 1.95A {Escherichia coli} SCOP: b.40.4.12 c.66.1.40 PDB: 2bh2_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=8.2e-07 Score=89.93 Aligned_cols=137 Identities=15% Similarity=0.113 Sum_probs=85.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|.++..||+++..|+|+|+|..|+..|+..+.. + .
T Consensus 286 ~~~~VLDlgcG~G~~~~~la~~~~~V~gvD~s~~al~~A~~n~~~----~----------------------~------- 332 (433)
T 1uwv_A 286 PEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARL----N----------------------G------- 332 (433)
T ss_dssp TTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHHH----T----------------------T-------
T ss_pred CCCEEEECCCCCCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHHHH----c----------------------C-------
Confidence 457999999999999999999999999999999999887732210 0 0
Q ss_pred CCCCCCCCcceeEecccccccC-CCCCCCCccEEEEeeccCChhh-HHHHHHHHHHhccCCcEEEE-ecCCcchhhhccC
Q 015966 269 PASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTCFFIDTAHN-IVEYIEIISRILKDGGVWIN-LGPLLYHFADLYG 345 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~-~~~~~~~fD~VvT~FFIDta~N-i~~yi~~I~~~LKPGG~wIN-~GPLlYh~~d~~g 345 (397)
. .++.++.+|+.+... .+...++||+|+.. .... ..+.++.+.+ ++|+++..- ..|-
T Consensus 333 -----~-~~v~f~~~d~~~~l~~~~~~~~~fD~Vv~d----PPr~g~~~~~~~l~~-~~p~~ivyvsc~p~--------- 392 (433)
T 1uwv_A 333 -----L-QNVTFYHENLEEDVTKQPWAKNGFDKVLLD----PARAGAAGVMQQIIK-LEPIRIVYVSCNPA--------- 392 (433)
T ss_dssp -----C-CSEEEEECCTTSCCSSSGGGTTCCSEEEEC----CCTTCCHHHHHHHHH-HCCSEEEEEESCHH---------
T ss_pred -----C-CceEEEECCHHHHhhhhhhhcCCCCEEEEC----CCCccHHHHHHHHHh-cCCCeEEEEECChH---------
Confidence 0 137788999877422 11234689999863 2211 1234454443 788886642 2111
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEe-ecCCCCCCCcccc
Q 015966 346 QEDEMSIELSLEDVKRVALHYGFEFEKEK-TIETTYTTNPRSM 387 (397)
Q Consensus 346 ~~~~~~ieLS~EEl~~ll~~~GFeii~e~-~i~~~Y~~d~~sm 387 (397)
.| ..++. ++.+.||++.+-. ...-+++..-+++
T Consensus 393 -------tl-ard~~-~l~~~Gy~~~~~~~~d~Fp~t~HvE~v 426 (433)
T 1uwv_A 393 -------TL-ARDSE-ALLKAGYTIARLAMLDMFPHTGHLESM 426 (433)
T ss_dssp -------HH-HHHHH-HHHHTTCEEEEEEEECCSTTSSCCEEE
T ss_pred -------HH-HhhHH-HHHHCCcEEEEEEEeccCCCCCeEEEE
Confidence 11 12343 4456799998854 3333444444443
|
| >2frx_A Hypothetical protein YEBU; rossmann-type S-adenosylmethionine-dependent methyltransfera domain; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.4e-07 Score=95.64 Aligned_cols=103 Identities=18% Similarity=0.182 Sum_probs=72.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|..+..||++ +-.|+|+|+|..|+..++-.+... ++
T Consensus 117 ~g~~VLDl~aGpG~kt~~lA~~~~~~g~V~avDis~~~l~~~~~n~~r~--------------------------g~--- 167 (479)
T 2frx_A 117 APQRVMDVAAAPGSKTTQISARMNNEGAILANEFSASRVKVLHANISRC--------------------------GI--- 167 (479)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHTTTCSEEEEECSSHHHHHHHHHHHHHH--------------------------TC---
T ss_pred CCCEEEEeCCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--------------------------CC---
Confidence 5679999999999999999986 368999999999998766322110 00
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEE---ee---cc----C-----Chhh-------HHHHHHHHHHh
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---CF---FI----D-----TAHN-------IVEYIEIISRI 323 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT---~F---FI----D-----ta~N-------i~~yi~~I~~~ 323 (397)
.++.++.+|+.++.. ...+.||+|++ |. .+ | +..+ -.+.|+.+.++
T Consensus 168 ----------~nv~~~~~D~~~~~~--~~~~~fD~Il~D~PcSg~G~~~~~pd~~~~~~~~~~~~l~~~q~~iL~~a~~~ 235 (479)
T 2frx_A 168 ----------SNVALTHFDGRVFGA--AVPEMFDAILLDAPCSGEGVVRKDPDALKNWSPESNQEIAATQRELIDSAFHA 235 (479)
T ss_dssp ----------CSEEEECCCSTTHHH--HSTTCEEEEEEECCCCCGGGGGTCTTSSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------CcEEEEeCCHHHhhh--hccccCCEEEECCCcCCcccccCCHHHHhhcCHhHHHHHHHHHHHHHHHHHHh
Confidence 126678888876521 02468999997 32 11 1 1111 23678999999
Q ss_pred ccCCcEEEE
Q 015966 324 LKDGGVWIN 332 (397)
Q Consensus 324 LKPGG~wIN 332 (397)
|||||++|-
T Consensus 236 LkpGG~Lvy 244 (479)
T 2frx_A 236 LRPGGTLVY 244 (479)
T ss_dssp EEEEEEEEE
T ss_pred cCCCCEEEE
Confidence 999999983
|
| >3b5i_A S-adenosyl-L-methionine:salicylic acid carboxyl methyltransferase-like protein; sabath family, indole-3-acetic acid, S-AD methionine; HET: SAH; 2.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.45 E-value=4.6e-06 Score=83.94 Aligned_cols=96 Identities=24% Similarity=0.360 Sum_probs=59.8
Q ss_pred ceeEecccccccCCCCCCCCccEEEEee---ccCChh-----------------------------------hHHHHHHH
Q 015966 278 FSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAH-----------------------------------NIVEYIEI 319 (397)
Q Consensus 278 ls~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~-----------------------------------Ni~~yi~~ 319 (397)
+.-+.|.| |.-....++||+|++++ +|...+ |+..+|+.
T Consensus 134 ~~gvpgSF---y~rlfP~~S~d~v~Ss~aLHWls~~p~~l~~~~~~~~nkg~i~~~~~~~~v~~ay~~Qf~~D~~~fL~~ 210 (374)
T 3b5i_A 134 VAGVPGSF---YRRLFPARTIDFFHSAFSLHWLSQVPESVTDRRSAAYNRGRVFIHGAGEKTTTAYKRQFQADLAEFLRA 210 (374)
T ss_dssp EEEEESCT---TSCCSCTTCEEEEEEESCTTBCSSCCGGGGCTTSTTCCTTTSSSSSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEecChhh---hcccCCCcceEEEEecceeeeeccCchhhhccccccccCCceEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34455665 33223478999999986 444221 55567999
Q ss_pred HHHhccCCcEEEE--ec-----CC-------cc-h-----hhhc--cCC--------CCCccccCCHHHHHHHHH-hCCC
Q 015966 320 ISRILKDGGVWIN--LG-----PL-------LY-H-----FADL--YGQ--------EDEMSIELSLEDVKRVAL-HYGF 368 (397)
Q Consensus 320 I~~~LKPGG~wIN--~G-----PL-------lY-h-----~~d~--~g~--------~~~~~ieLS~EEl~~ll~-~~GF 368 (397)
+++.|||||++|- .| |. +| . +.+. .|. ..-..+..|.+|++.+++ ..||
T Consensus 211 ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~~~l~~al~~l~~eG~i~~e~~d~f~~P~y~ps~~E~~~~l~~~~~F 290 (374)
T 3b5i_A 211 RAAEVKRGGAMFLVCLGRTSVDPTDQGGAGLLFGTHFQDAWDDLVREGLVAAEKRDGFNIPVYAPSLQDFKEVVDANGSF 290 (374)
T ss_dssp HHHHEEEEEEEEEEEEECCCSSTTCCHHHHHHHSSHHHHHHHHTTSSSSSCHHHHSSCCCCBCCCCHHHHHHHHHHHCSE
T ss_pred HHHHhCCCCEEEEEEecCCCCccccccchhhHHHHHHHHHHHHHHHhCCcchhhcccCCccccCCCHHHHHHHHHhcCCc
Confidence 9999999999993 22 11 11 0 1111 110 111245679999999998 5999
Q ss_pred EEEEEeec
Q 015966 369 EFEKEKTI 376 (397)
Q Consensus 369 eii~e~~i 376 (397)
+|.+.+..
T Consensus 291 ~I~~le~~ 298 (374)
T 3b5i_A 291 AIDKLVVY 298 (374)
T ss_dssp EEEEEEEE
T ss_pred EEEEEEEE
Confidence 99886533
|
| >3m6w_A RRNA methylase; rRNA methyltransferase, 5-methylcytidine, RSMF, adoMet, MULT specific, methyltransferase, transferase; HET: CXM SAM; 1.30A {Thermus thermophilus} PDB: 3m6v_A* 3m6u_A* 3m6x_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=2.4e-07 Score=95.56 Aligned_cols=101 Identities=13% Similarity=0.023 Sum_probs=71.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||+|||+|..+..||++ +-.|+|+|+|..|+..++-.+... +
T Consensus 101 ~g~~VLDlgaGpG~kt~~LA~~~~~~g~V~AvDis~~~l~~a~~n~~r~--------------------------G---- 150 (464)
T 3m6w_A 101 PGERVLDLAAAPGGKTTHLAARMGGKGLLLANEVDGKRVRGLLENVERW--------------------------G---- 150 (464)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHH--------------------------C----
T ss_pred CCCEEEEEcCCcCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHc--------------------------C----
Confidence 5779999999999999999976 247999999999998766322110 0
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEE---ee---cc---------CChhhH-------HHHHHHHHHh
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---CF---FI---------DTAHNI-------VEYIEIISRI 323 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT---~F---FI---------Dta~Ni-------~~yi~~I~~~ 323 (397)
. . +.++.+|+.++.. ...+.||+|+. |. .+ .+..++ .+.|+.+.++
T Consensus 151 --------~-~-v~~~~~Da~~l~~--~~~~~FD~Il~D~PcSg~G~~rr~pd~~~~~~~~~~~~l~~~Q~~iL~~a~~~ 218 (464)
T 3m6w_A 151 --------A-P-LAVTQAPPRALAE--AFGTYFHRVLLDAPCSGEGMFRKDREAARHWGPSAPKRMAEVQKALLAQASRL 218 (464)
T ss_dssp --------C-C-CEEECSCHHHHHH--HHCSCEEEEEEECCCCCGGGTTTCTTSGGGCCTTHHHHHHHHHHHHHHHHHTT
T ss_pred --------C-e-EEEEECCHHHhhh--hccccCCEEEECCCcCCccccccChHHhhhcCHHHHHHHHHHHHHHHHHHHHh
Confidence 0 1 4567788877531 11478999985 21 11 111122 5689999999
Q ss_pred ccCCcEEE
Q 015966 324 LKDGGVWI 331 (397)
Q Consensus 324 LKPGG~wI 331 (397)
|||||++|
T Consensus 219 LkpGG~Lv 226 (464)
T 3m6w_A 219 LGPGGVLV 226 (464)
T ss_dssp EEEEEEEE
T ss_pred cCCCcEEE
Confidence 99999998
|
| >3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=1.3e-06 Score=83.92 Aligned_cols=97 Identities=14% Similarity=0.050 Sum_probs=67.9
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~ 253 (397)
+++.|.+.... .++ +|||+|||+|.++..|+++|..|+|+|+|..|+..++-.+
T Consensus 35 i~~~Iv~~~~~---~~~-~VLEIG~G~G~lt~~L~~~~~~V~avEid~~~~~~l~~~~---------------------- 88 (271)
T 3fut_A 35 HLRRIVEAARP---FTG-PVFEVGPGLGALTRALLEAGAEVTAIEKDLRLRPVLEETL---------------------- 88 (271)
T ss_dssp HHHHHHHHHCC---CCS-CEEEECCTTSHHHHHHHHTTCCEEEEESCGGGHHHHHHHT----------------------
T ss_pred HHHHHHHhcCC---CCC-eEEEEeCchHHHHHHHHHcCCEEEEEECCHHHHHHHHHhc----------------------
Confidence 55555554432 246 9999999999999999999999999999999997665111
Q ss_pred CcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--eccCChhhHHHHHHH
Q 015966 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTAHNIVEYIEI 319 (397)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta~Ni~~yi~~ 319 (397)
+ ..++.++.||+.++-. + ....+|.||.+ |+|.+. -+.++++.
T Consensus 89 -----------~---------~~~v~vi~~D~l~~~~-~-~~~~~~~iv~NlPy~iss~-il~~ll~~ 133 (271)
T 3fut_A 89 -----------S---------GLPVRLVFQDALLYPW-E-EVPQGSLLVANLPYHIATP-LVTRLLKT 133 (271)
T ss_dssp -----------T---------TSSEEEEESCGGGSCG-G-GSCTTEEEEEEECSSCCHH-HHHHHHHH
T ss_pred -----------C---------CCCEEEEECChhhCCh-h-hccCccEEEecCcccccHH-HHHHHhcC
Confidence 0 0137889999988632 1 11368999987 456553 35556654
|
| >3bt7_A TRNA (uracil-5-)-methyltransferase; methyluridine, methyltransferase, TRMA, RUMT; HET: 5MU; 2.43A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.35 E-value=8.1e-07 Score=87.93 Aligned_cols=149 Identities=10% Similarity=0.057 Sum_probs=91.2
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
.+++.+.+.... .+.+|||+|||+|.++..||+.+..|+|+|+|..|+..|+..+.. +
T Consensus 201 ~l~~~~~~~~~~----~~~~vLDl~cG~G~~~l~la~~~~~V~gvd~~~~ai~~a~~n~~~----n-------------- 258 (369)
T 3bt7_A 201 QMLEWALDVTKG----SKGDLLELYCGNGNFSLALARNFDRVLATEIAKPSVAAAQYNIAA----N-------------- 258 (369)
T ss_dssp HHHHHHHHHTTT----CCSEEEEESCTTSHHHHHHGGGSSEEEEECCCHHHHHHHHHHHHH----T--------------
T ss_pred HHHHHHHHHhhc----CCCEEEEccCCCCHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHH----c--------------
Confidence 355555554432 246899999999999999999888999999999999887632210 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccC-CCCC------------CCCccEEEEeeccCChhhHHHHHHH
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS-DPSQ------------VGAWDAVVTCFFIDTAHNIVEYIEI 319 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~-~~~~------------~~~fD~VvT~FFIDta~Ni~~yi~~ 319 (397)
. . .++.++.||..++.. .... .+.||+|+. |.... .+.+.
T Consensus 259 --------g------------~-~~v~~~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~fD~Vv~----dPPr~--g~~~~ 311 (369)
T 3bt7_A 259 --------H------------I-DNVQIIRMAAEEFTQAMNGVREFNRLQGIDLKSYQCETIFV----DPPRS--GLDSE 311 (369)
T ss_dssp --------T------------C-CSEEEECCCSHHHHHHHSSCCCCTTGGGSCGGGCCEEEEEE----CCCTT--CCCHH
T ss_pred --------C------------C-CceEEEECCHHHHHHHHhhccccccccccccccCCCCEEEE----CcCcc--ccHHH
Confidence 0 0 126677788766421 0000 137999974 54321 24566
Q ss_pred HHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeec-CCCCCCCcccc
Q 015966 320 ISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTI-ETTYTTNPRSM 387 (397)
Q Consensus 320 I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i-~~~Y~~d~~sm 387 (397)
+.+.|+|||.+|-+. -+ + ..-..++..+. + ||++.+.... .-+++..-+++
T Consensus 312 ~~~~l~~~g~ivyvs------c~-----p----~t~ard~~~l~-~-~y~~~~~~~~D~FP~T~HvE~v 363 (369)
T 3bt7_A 312 TEKMVQAYPRILYIS------CN-----P----ETLCKNLETLS-Q-THKVERLALFDQFPYTHHMQCG 363 (369)
T ss_dssp HHHHHTTSSEEEEEE------SC-----H----HHHHHHHHHHH-H-HEEEEEEEEECCSTTSSCCEEE
T ss_pred HHHHHhCCCEEEEEE------CC-----H----HHHHHHHHHHh-h-CcEEEEEEeeccCCCCCcEEEE
Confidence 777888999887321 00 0 11234555554 3 7998886633 34555555544
|
| >4gqb_A Protein arginine N-methyltransferase 5; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} PDB: 4g56_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=8.9e-07 Score=94.68 Aligned_cols=114 Identities=22% Similarity=0.164 Sum_probs=78.2
Q ss_pred HHHHHHhhCCCCCC-CCCCeEEEecCCCChhHH---HHHHcC-C--eEEEEeCCHHHHHHHHhhhhcccccCcccccccc
Q 015966 174 ILEELDALFPNRSK-ESPPACLVPGAGLGRLAL---EISHLG-F--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWI 246 (397)
Q Consensus 174 Il~~L~~~~p~~~~-~~~~rVLvPGCGlGRLa~---eLA~~G-f--~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi 246 (397)
|..+|....+.... .+...|||+|||+|-|+. ..++++ - +|.|+|-|. |...+..+.+. +.
T Consensus 341 I~~Al~d~~~~~~~~~~~~vVldVGaGrGpLv~~al~A~a~~~~~vkVyAVEknp-~A~~a~~~v~~----N~------- 408 (637)
T 4gqb_A 341 IYKCLLDRVPEEEKDTNVQVLMVLGAGRGPLVNASLRAAKQADRRIKLYAVEKNP-NAVVTLENWQF----EE------- 408 (637)
T ss_dssp HHHHHHHHSCGGGTTTCEEEEEEESCTTSHHHHHHHHHHHHTTCEEEEEEEESCH-HHHHHHHHHHH----HT-------
T ss_pred HHHHHHHhhhhccccCCCcEEEEECCCCcHHHHHHHHHHHhcCCCcEEEEEECCH-HHHHHHHHHHh----cc-------
Confidence 44566666553221 244679999999999944 444433 2 589999997 65555544321 11
Q ss_pred ccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe---eccCChhhHHHHHHHHHHh
Q 015966 247 HSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRI 323 (397)
Q Consensus 247 ~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~---FFIDta~Ni~~yi~~I~~~ 323 (397)
..+.+.++.||++++-. .++.|+||+= +|++-.. ..+.+....|.
T Consensus 409 ---------------------------~~dkVtVI~gd~eev~L----PEKVDIIVSEwMG~fLl~E~-mlevL~Ardr~ 456 (637)
T 4gqb_A 409 ---------------------------WGSQVTVVSSDMREWVA----PEKADIIVSELLGSFADNEL-SPECLDGAQHF 456 (637)
T ss_dssp ---------------------------TGGGEEEEESCTTTCCC----SSCEEEEECCCCBTTBGGGC-HHHHHHHHGGG
T ss_pred ---------------------------CCCeEEEEeCcceeccC----CcccCEEEEEcCcccccccC-CHHHHHHHHHh
Confidence 12348899999999854 3789999986 4665543 55888888999
Q ss_pred ccCCcEEE
Q 015966 324 LKDGGVWI 331 (397)
Q Consensus 324 LKPGG~wI 331 (397)
|||||+.|
T Consensus 457 LKPgGimi 464 (637)
T 4gqb_A 457 LKDDGVSI 464 (637)
T ss_dssp EEEEEEEE
T ss_pred cCCCcEEc
Confidence 99999999
|
| >2dul_A N(2),N(2)-dimethylguanosine tRNA methyltransferas; tRNA modification enzyme, guanine 26, N(2),N(2)-dimethyltran structural genomics; 1.90A {Pyrococcus horikoshii} SCOP: c.66.1.58 PDB: 2ejt_A* 2eju_A* 2ytz_A* | Back alignment and structure |
|---|
Probab=98.32 E-value=6.5e-07 Score=89.81 Aligned_cols=111 Identities=12% Similarity=-0.023 Sum_probs=72.9
Q ss_pred CCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 190 PPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~-G-f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
+.+|||+|||+|.++..+|++ | ..|++||++..++..++.-+..... .+..|+-
T Consensus 48 ~~~VLDl~aGtG~~~l~~a~~~~~~~V~avDi~~~av~~a~~N~~~n~~------------------------~~~~~~~ 103 (378)
T 2dul_A 48 PKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFD------------------------GELRESK 103 (378)
T ss_dssp CSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCC------------------------SCCEECS
T ss_pred CCEEEECCCchhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHhcc------------------------ccccccc
Confidence 468999999999999999998 4 5799999999999877743321100 0000000
Q ss_pred CCC-CCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 268 HPA-SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 268 ~p~-~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
... .... .++.++.+|..++.. ...+.||+|+ +|..-...++++.+.+.|||||+++
T Consensus 104 ~~~~~~gl-~~i~v~~~Da~~~~~--~~~~~fD~I~----lDP~~~~~~~l~~a~~~lk~gG~l~ 161 (378)
T 2dul_A 104 GRAILKGE-KTIVINHDDANRLMA--ERHRYFHFID----LDPFGSPMEFLDTALRSAKRRGILG 161 (378)
T ss_dssp SEEEEESS-SEEEEEESCHHHHHH--HSTTCEEEEE----ECCSSCCHHHHHHHHHHEEEEEEEE
T ss_pred ccccccCC-CceEEEcCcHHHHHH--hccCCCCEEE----eCCCCCHHHHHHHHHHhcCCCCEEE
Confidence 000 0001 126789999877532 1135799998 3443233588999999999999776
|
| >3tqs_A Ribosomal RNA small subunit methyltransferase A; protein synthesis; 1.98A {Coxiella burnetii} SCOP: c.66.1.0 | Back alignment and structure |
|---|
Probab=98.31 E-value=1.8e-06 Score=82.11 Aligned_cols=52 Identities=12% Similarity=0.018 Sum_probs=42.2
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (397)
+++.|.+.... .++.+|||+|||+|.++..|+++|..|+|+|+|..|+..++
T Consensus 17 i~~~iv~~~~~---~~~~~VLEIG~G~G~lt~~La~~~~~V~avEid~~~~~~~~ 68 (255)
T 3tqs_A 17 VLQKIVSAIHP---QKTDTLVEIGPGRGALTDYLLTECDNLALVEIDRDLVAFLQ 68 (255)
T ss_dssp HHHHHHHHHCC---CTTCEEEEECCTTTTTHHHHTTTSSEEEEEECCHHHHHHHH
T ss_pred HHHHHHHhcCC---CCcCEEEEEcccccHHHHHHHHhCCEEEEEECCHHHHHHHH
Confidence 44444444332 25679999999999999999999999999999999998665
|
| >3v97_A Ribosomal RNA large subunit methyltransferase L; YCBY, RNA methyltransferase, ribosome RNA, SAH, RLML; HET: SAH OSU; 2.20A {Escherichia coli} PDB: 3v8v_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=6.3e-06 Score=88.82 Aligned_cols=104 Identities=18% Similarity=0.217 Sum_probs=72.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--------------------------------------------CeEEEEeCCHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--------------------------------------------FISQGNEFSYYMM 224 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--------------------------------------------f~V~GnD~S~~ML 224 (397)
++.+||||+||+|.++.+.|..+ ..+.|+|++..|+
T Consensus 190 ~~~~llDP~CGSGt~lIeAa~~a~~~apG~~R~~f~fe~w~~~~~~~w~~~~~ea~~~~~~~~~~~~~~i~G~Did~~av 269 (703)
T 3v97_A 190 PGTPLLDPMCGSGTLLIEAAMLATDRAPGLHRGRWGFSGWAQHDEAIWQEVKAEAQTRARKGLAEYSSHFYGSDSDARVI 269 (703)
T ss_dssp TTSCEEETTCTTSHHHHHHHHHHTTCCTTTTCCCCTTTTBTTCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEESCHHHH
T ss_pred CCCeEEecCCCCcHHHHHHHHHHhhcCCCCCccccchhhcccCCHHHHHHHHHHHHHHhhhccccCCccEEEEECCHHHH
Confidence 45689999999999999999764 4799999999999
Q ss_pred HHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe
Q 015966 225 ICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC 304 (397)
Q Consensus 225 ~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~ 304 (397)
..|+.-+..+ +....+.+.++|+.++.. |...+.||+|||+
T Consensus 270 ~~A~~N~~~a--------------------------------------gv~~~i~~~~~D~~~~~~-~~~~~~~d~Iv~N 310 (703)
T 3v97_A 270 QRARTNARLA--------------------------------------GIGELITFEVKDVAQLTN-PLPKGPYGTVLSN 310 (703)
T ss_dssp HHHHHHHHHT--------------------------------------TCGGGEEEEECCGGGCCC-SCTTCCCCEEEEC
T ss_pred HHHHHHHHHc--------------------------------------CCCCceEEEECChhhCcc-ccccCCCCEEEeC
Confidence 9887332111 111237889999988642 2223489999998
Q ss_pred --ec--cCChhhHHHHHHHHHHh---ccCCcEEE
Q 015966 305 --FF--IDTAHNIVEYIEIISRI---LKDGGVWI 331 (397)
Q Consensus 305 --FF--IDta~Ni~~yi~~I~~~---LKPGG~wI 331 (397)
|- +....++.+..+.+.+. ++|||...
T Consensus 311 PPYG~Rlg~~~~l~~ly~~l~~~lk~~~~g~~~~ 344 (703)
T 3v97_A 311 PPYGERLDSEPALIALHSLLGRIMKNQFGGWNLS 344 (703)
T ss_dssp CCCCC---CCHHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred CCccccccchhHHHHHHHHHHHHHHhhCCCCeEE
Confidence 53 44445566655555555 45788766
|
| >2ar0_A M.ecoki, type I restriction enzyme ecoki M protein; structural genomics, protein structure initiative, nysgxrc; 2.80A {Escherichia coli} SCOP: c.66.1.45 PDB: 2y7c_B 2y7h_B* | Back alignment and structure |
|---|
Probab=98.25 E-value=2.9e-06 Score=88.75 Aligned_cols=124 Identities=17% Similarity=0.127 Sum_probs=78.3
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--------------------CCeEEEEeCCHHHHHHHHhhhh
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--------------------GFISQGNEFSYYMMICSSFILN 232 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--------------------Gf~V~GnD~S~~ML~~s~fiLn 232 (397)
+|++.+.+.+.. .++.+|||||||+|.+...+++. ...+.|+|++..|+..|+..+.
T Consensus 156 ~iv~~mv~~l~p---~~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~~~~i~GiEid~~~~~lA~~nl~ 232 (541)
T 2ar0_A 156 PLIKTIIHLLKP---QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLALMNCL 232 (541)
T ss_dssp HHHHHHHHHHCC---CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcc---CCCCeEecCCcccchHHHHHHHHHHHhhcccccCCHHHHhhhhcceEEEEcCCHHHHHHHHHHHH
Confidence 355555544421 25679999999999998887754 2379999999999988874321
Q ss_pred cccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--eccC--
Q 015966 233 HTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFID-- 308 (397)
Q Consensus 233 ~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFID-- 308 (397)
. |...+. |+ ....+..||++.... ...+.||+|+++ |-..
T Consensus 233 l-------------~gi~~~------------~~---------~~~~I~~gDtL~~~~--~~~~~fD~Vv~NPPf~~~~~ 276 (541)
T 2ar0_A 233 L-------------HDIEGN------------LD---------HGGAIRLGNTLGSDG--ENLPKAHIVATNPPFGSAAG 276 (541)
T ss_dssp T-------------TTCCCB------------GG---------GTBSEEESCTTSHHH--HTSCCEEEEEECCCCTTCSS
T ss_pred H-------------hCCCcc------------cc---------ccCCeEeCCCccccc--ccccCCeEEEECCCcccccc
Confidence 0 000000 00 114667888765321 124689999987 3211
Q ss_pred ----------ChhhHHHHHHHHHHhccCCcEEEEecC
Q 015966 309 ----------TAHNIVEYIEIISRILKDGGVWINLGP 335 (397)
Q Consensus 309 ----------ta~Ni~~yi~~I~~~LKPGG~wIN~GP 335 (397)
+...-..+++.+.+.|||||+.+-+-|
T Consensus 277 ~~~~~~~~~~~~~~~~~Fl~~~l~~Lk~gGr~a~V~p 313 (541)
T 2ar0_A 277 TNITRTFVHPTSNKQLCFMQHIIETLHPGGRAAVVVP 313 (541)
T ss_dssp CCCCSCCSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhHhhcCCCCCchHHHHHHHHHHHhCCCCEEEEEec
Confidence 111124789999999999999885444
|
| >2r6z_A UPF0341 protein in RSP 3' region; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 1.80A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.1e-06 Score=83.61 Aligned_cols=40 Identities=23% Similarity=0.216 Sum_probs=35.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCH-------HHHHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSY-------YMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~-------~ML~~s~ 228 (397)
++.+|||+|||+|+++..||++|..|+|+|+|. .|+..++
T Consensus 83 ~~~~VLDlgcG~G~~a~~lA~~g~~V~~vD~s~~~~~ll~~~l~~a~ 129 (258)
T 2r6z_A 83 AHPTVWDATAGLGRDSFVLASLGLTVTAFEQHPAVACLLSDGIRRAL 129 (258)
T ss_dssp GCCCEEETTCTTCHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHHH
T ss_pred CcCeEEEeeCccCHHHHHHHHhCCEEEEEECChhhhHHHHHHHHHHH
Confidence 456899999999999999999999999999999 7766554
|
| >3khk_A Type I restriction-modification system methylation subunit; structural genomics, PSI-2, protein structure initiative; 2.55A {Methanosarcina mazei} | Back alignment and structure |
|---|
Probab=98.13 E-value=5.5e-06 Score=86.88 Aligned_cols=39 Identities=13% Similarity=0.117 Sum_probs=32.6
Q ss_pred CeEEEecCCCChhHHHHHHc-----------------CCeEEEEeCCHHHHHHHHh
Q 015966 191 PACLVPGAGLGRLALEISHL-----------------GFISQGNEFSYYMMICSSF 229 (397)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~-----------------Gf~V~GnD~S~~ML~~s~f 229 (397)
.+||||+||+|.+...+++. ...+.|+|++..|+..|+.
T Consensus 246 ~~VlDPaCGSG~fLi~a~~~l~~~~~~~~~~~~~~~~~~~i~G~Eid~~~~~lA~~ 301 (544)
T 3khk_A 246 GRVYDPAMGSGGFFVSSDKFIEKHANVKHYNASEQKKQISVYGQESNPTTWKLAAM 301 (544)
T ss_dssp EEEEESSCTTCHHHHHHHHHHHHHHHHHTSCHHHHGGGEEEEECCCCHHHHHHHHH
T ss_pred CeEeCcccCcCcHHHHHHHHHHHhccccccchHHHhhhceEEEEeCCHHHHHHHHH
Confidence 49999999999998776542 4579999999999988774
|
| >1qyr_A KSGA, high level kasugamycin resistance protein, S-adenosylMet; adenosine dimethyltransferase, rRNA modification, transferase, translation; 2.10A {Escherichia coli} SCOP: c.66.1.24 PDB: 4adv_V 3tpz_A | Back alignment and structure |
|---|
Probab=98.11 E-value=8e-06 Score=77.41 Aligned_cols=50 Identities=12% Similarity=0.070 Sum_probs=38.1
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCe--EEEEeCCHHHHHHHH
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFI--SQGNEFSYYMMICSS 228 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~--V~GnD~S~~ML~~s~ 228 (397)
+++.+.+.+.. .++.+|||+|||+|.++. +++ |.. |+|+|+|..|+..++
T Consensus 9 i~~~iv~~~~~---~~~~~VLEIG~G~G~lt~-l~~-~~~~~v~avEid~~~~~~a~ 60 (252)
T 1qyr_A 9 VIDSIVSAINP---QKGQAMVEIGPGLAALTE-PVG-ERLDQLTVIELDRDLAARLQ 60 (252)
T ss_dssp HHHHHHHHHCC---CTTCCEEEECCTTTTTHH-HHH-TTCSCEEEECCCHHHHHHHH
T ss_pred HHHHHHHhcCC---CCcCEEEEECCCCcHHHH-hhh-CCCCeEEEEECCHHHHHHHH
Confidence 44444444332 256789999999999999 764 677 999999999997665
|
| >3ftd_A Dimethyladenosine transferase; KSGA, rossmann-like fold, RNA methyltransferase, mtase, anti resistance, methyltransferase, RNA-binding; 1.44A {Aquifex aeolicus} PDB: 3ftc_A 3fte_A 3ftf_A* 3r9x_B* | Back alignment and structure |
|---|
Probab=98.07 E-value=1.5e-05 Score=75.31 Aligned_cols=52 Identities=15% Similarity=0.076 Sum_probs=42.5
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHH
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSS 228 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~ 228 (397)
+++.|.+.... .++.+|||+|||+|.++..|+++| ..|+|+|+|..|+..++
T Consensus 19 i~~~iv~~~~~---~~~~~VLDiG~G~G~lt~~L~~~~~~~v~avEid~~~~~~~~ 71 (249)
T 3ftd_A 19 VLKKIAEELNI---EEGNTVVEVGGGTGNLTKVLLQHPLKKLYVIELDREMVENLK 71 (249)
T ss_dssp HHHHHHHHTTC---CTTCEEEEEESCHHHHHHHHTTSCCSEEEEECCCHHHHHHHT
T ss_pred HHHHHHHhcCC---CCcCEEEEEcCchHHHHHHHHHcCCCeEEEEECCHHHHHHHH
Confidence 56666665542 256799999999999999999996 89999999999986544
|
| >2efj_A 3,7-dimethylxanthine methyltransferase; SAM-dependant methyltransferase, SAH, theobromine; HET: SAH 37T; 2.00A {Coffea canephora} PDB: 2eg5_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=3.2e-05 Score=78.09 Aligned_cols=60 Identities=27% Similarity=0.228 Sum_probs=38.4
Q ss_pred HHHHHHhccCCcEEEE--ec--CC--------cch--hhhc--cCC--------CCCccccCCHHHHHHHHHhC-CCEEE
Q 015966 317 IEIISRILKDGGVWIN--LG--PL--------LYH--FADL--YGQ--------EDEMSIELSLEDVKRVALHY-GFEFE 371 (397)
Q Consensus 317 i~~I~~~LKPGG~wIN--~G--PL--------lYh--~~d~--~g~--------~~~~~ieLS~EEl~~ll~~~-GFeii 371 (397)
|+..++.|||||++|- +| .. +.. +.+. .|. .....+..|.+|++.++++. ||++.
T Consensus 208 L~~Ra~eL~pGG~mvl~~~gr~~~~~~~~~~~~l~~al~~lv~eGli~~ek~dsf~~P~y~ps~~E~~~~le~~g~F~i~ 287 (384)
T 2efj_A 208 LRIHSEELISRGRMLLTFICKEDEFDHPNSMDLLEMSINDLVIEGHLEEEKLDSFNVPIYAPSTEEVKRIVEEEGSFEIL 287 (384)
T ss_dssp HHHHHHHEEEEEEEEEEEECCCTTTCCCCHHHHHHHHHHHHHHHTSSCHHHHHTCCCSBCCCCHHHHHHHHHHHCSEEEE
T ss_pred HHHHHHHhccCCeEEEEEecCCCcccCcccHHHHHHHHHHHHHhCCcchhhhcccCCcccCCCHHHHHHHHHHcCCceEE
Confidence 8999999999999994 22 11 110 1110 110 11124568999999999987 59999
Q ss_pred EEeec
Q 015966 372 KEKTI 376 (397)
Q Consensus 372 ~e~~i 376 (397)
+.+..
T Consensus 288 ~le~~ 292 (384)
T 2efj_A 288 YLETF 292 (384)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 86533
|
| >3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=4.8e-06 Score=84.14 Aligned_cols=99 Identities=18% Similarity=0.124 Sum_probs=71.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc--C-CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--G-f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||++||+|-++.++|++ | -.|++||++..++..++.-+.. +
T Consensus 52 ~g~~VLDlfaGtG~~sl~aa~~~~ga~~V~avDi~~~av~~~~~N~~~----N--------------------------- 100 (392)
T 3axs_A 52 RPVKVADPLSASGIRAIRFLLETSCVEKAYANDISSKAIEIMKENFKL----N--------------------------- 100 (392)
T ss_dssp SCEEEEESSCTTSHHHHHHHHHCSCEEEEEEECSCHHHHHHHHHHHHH----T---------------------------
T ss_pred CCCEEEECCCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHH----h---------------------------
Confidence 4679999999999999999995 5 4799999999998876632211 0
Q ss_pred CCCCCCCCCCCc-ceeEecccccccC-CCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 266 DIHPASAGITEG-FSMCGGDFVEVYS-DPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 266 Dv~p~~~~~~~~-ls~~~GDF~ely~-~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
.+.++ +.++.+|..++.. . ..+.||+|+. |......++++.+.++|||||+++
T Consensus 101 -------gl~~~~v~v~~~Da~~~l~~~--~~~~fD~V~l----DP~g~~~~~l~~a~~~Lk~gGll~ 155 (392)
T 3axs_A 101 -------NIPEDRYEIHGMEANFFLRKE--WGFGFDYVDL----DPFGTPVPFIESVALSMKRGGILS 155 (392)
T ss_dssp -------TCCGGGEEEECSCHHHHHHSC--CSSCEEEEEE----CCSSCCHHHHHHHHHHEEEEEEEE
T ss_pred -------CCCCceEEEEeCCHHHHHHHh--hCCCCcEEEE----CCCcCHHHHHHHHHHHhCCCCEEE
Confidence 01122 5678889877532 1 1357999964 442223468999999999999776
|
| >3ua3_A Protein arginine N-methyltransferase 5; TIM-barrel, rossmann fold, beta-barrel, symmetric arginine dimethylase, SAM binding; HET: SAH; 3.00A {Caenorhabditis elegans} PDB: 3ua4_A | Back alignment and structure |
|---|
Probab=98.05 E-value=8.5e-06 Score=88.06 Aligned_cols=116 Identities=15% Similarity=0.110 Sum_probs=75.1
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHH--HH--cC-----------CeEEEEeCCHHHHHHHHhhhhcccccC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEI--SH--LG-----------FISQGNEFSYYMMICSSFILNHTETAG 238 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eL--A~--~G-----------f~V~GnD~S~~ML~~s~fiLn~~~~~~ 238 (397)
|...++..++.. .+...|||+|||+|-|+... |. .| ..|.|+|-|..+....+.+.. +
T Consensus 396 I~~al~d~~~~~--~~~~VVldVGaGtGpLs~~al~A~~~a~~~~~~~~~~~~~kVyAVEknp~A~~~l~~~~~-----N 468 (745)
T 3ua3_A 396 VVGALKDLGADG--RKTVVIYLLGGGRGPIGTKILKSEREYNNTFRQGQESLKVKLYIVEKNPNAIVTLKYMNV-----R 468 (745)
T ss_dssp HHHHHHHHHTTC--CSEEEEEEESCTTCHHHHHHHHHHHHHHHHHSTTSCCCEEEEEEEECCHHHHHHHHHHHH-----H
T ss_pred HHHHHHHhhccc--CCCcEEEEECCCCCHHHHHHHHHHHHhCccccccccccccEEEEEeCChHHHHHHHHHHh-----c
Confidence 444455544321 24567999999999996432 22 23 389999999855543332110 1
Q ss_pred ccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCC--CCCCCCccEEEEe---eccCChhhH
Q 015966 239 EWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD--PSQVGAWDAVVTC---FFIDTAHNI 313 (397)
Q Consensus 239 ~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~--~~~~~~fD~VvT~---FFIDta~Ni 313 (397)
. ..+.+.++.||++++-.+ ....++.|+||+- +|++.. -.
T Consensus 469 g----------------------------------~~d~VtVI~gd~eev~lp~~~~~~ekVDIIVSElmGsfl~nE-L~ 513 (745)
T 3ua3_A 469 T----------------------------------WKRRVTIIESDMRSLPGIAKDRGFEQPDIIVSELLGSFGDNE-LS 513 (745)
T ss_dssp T----------------------------------TTTCSEEEESCGGGHHHHHHHTTCCCCSEEEECCCBTTBGGG-SH
T ss_pred C----------------------------------CCCeEEEEeCchhhcccccccCCCCcccEEEEeccccccchh-cc
Confidence 1 123378899999987431 0013789999986 477654 24
Q ss_pred HHHHHHHHHhccCCcEEE
Q 015966 314 VEYIEIISRILKDGGVWI 331 (397)
Q Consensus 314 ~~yi~~I~~~LKPGG~wI 331 (397)
.+.|..+.+.|||||+.|
T Consensus 514 pe~Ld~v~r~Lkp~Gi~i 531 (745)
T 3ua3_A 514 PECLDGVTGFLKPTTISI 531 (745)
T ss_dssp HHHHHTTGGGSCTTCEEE
T ss_pred HHHHHHHHHhCCCCcEEE
Confidence 577888889999999999
|
| >3lkd_A Type I restriction-modification system methyltransferase subunit; Q5M500_STRT2, STU0711, NESG, SUR80, structural genomics, PSI-2; 2.25A {Streptococcus thermophilus} | Back alignment and structure |
|---|
Probab=98.02 E-value=2.6e-05 Score=81.76 Aligned_cols=110 Identities=15% Similarity=0.102 Sum_probs=73.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc-----CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccc
Q 015966 189 SPPACLVPGAGLGRLALEISHL-----GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVS 263 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-----Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~ 263 (397)
++.+||||+||+|.+...+++. ...+.|+|++..|+..|+.-+- . +++.
T Consensus 221 ~~~~VlDPaCGSG~fLi~a~~~l~~~~~~~i~G~Eid~~~~~lA~~Nl~--l------------------------~gi~ 274 (542)
T 3lkd_A 221 QGFTLYDATMGSGSLLLNAKRYSRQPQTVVYFGQELNTSTYNLARMNMI--L------------------------HGVP 274 (542)
T ss_dssp TTCEEEETTCTTSTTGGGHHHHCSCTTTCEEEEEESCHHHHHHHHHHHH--H------------------------TTCC
T ss_pred CCCEEeecccchhHHHHHHHHHHHhccCceEEEEECcHHHHHHHHHHHH--H------------------------cCCC
Confidence 5679999999999998888876 5689999999999988763221 0 0110
Q ss_pred cCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--eccC--------------------Chhh-HHHHHHHH
Q 015966 264 IPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFID--------------------TAHN-IVEYIEII 320 (397)
Q Consensus 264 iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFID--------------------ta~N-i~~yi~~I 320 (397)
..++.+..||++...-+......||+||++ |-.. ...+ -..++..+
T Consensus 275 -----------~~~~~I~~gDtL~~d~p~~~~~~fD~IvaNPPf~~~~~~~~~~~~d~rf~~~G~~~~~s~~~~~Fl~~~ 343 (542)
T 3lkd_A 275 -----------IENQFLHNADTLDEDWPTQEPTNFDGVLMNPPYSAKWSASSGFMDDPRFSPFGKLAPKSKADFAFLLHG 343 (542)
T ss_dssp -----------GGGEEEEESCTTTSCSCCSSCCCBSEEEECCCTTCCCCCCGGGGGSTTTGGGSSCCCTTCCHHHHHHHH
T ss_pred -----------cCccceEecceecccccccccccccEEEecCCcCCccccchhhhhhhhhhhhhhcCCCchhhHHHHHHH
Confidence 012567788876531001124689999987 3111 0011 12479999
Q ss_pred HHhcc-CCcEEEEecC
Q 015966 321 SRILK-DGGVWINLGP 335 (397)
Q Consensus 321 ~~~LK-PGG~wIN~GP 335 (397)
.+.|| |||+..-+-|
T Consensus 344 l~~Lk~~gGr~a~VlP 359 (542)
T 3lkd_A 344 YYHLKQDNGVMAIVLP 359 (542)
T ss_dssp HHTBCTTTCEEEEEEE
T ss_pred HHHhCCCceeEEEEec
Confidence 99999 9999875444
|
| >3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.01 E-value=2.3e-05 Score=76.64 Aligned_cols=108 Identities=16% Similarity=0.193 Sum_probs=76.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-G-f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
+..+||++|-|.|..+.++.+. + -.|+.+|+...++.+++.-+ |-... + ..
T Consensus 83 ~pk~VLIiGgGdG~~~revlk~~~v~~v~~VEID~~Vv~~a~~~l------------p~~~~--~---------~~---- 135 (294)
T 3o4f_A 83 HAKHVLIIGGGDGAMLREVTRHKNVESITMVEIDAGVVSFCRQYL------------PNHNA--G---------SY---- 135 (294)
T ss_dssp CCCEEEEESCTTSHHHHHHHTCTTCCEEEEEESCHHHHHHHHHHC------------HHHHT--T---------GG----
T ss_pred CCCeEEEECCCchHHHHHHHHcCCcceEEEEcCCHHHHHHHHhcC------------ccccc--c---------cc----
Confidence 4679999999999999999987 3 57999999999998776322 10000 0 00
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeecc--CChhhH--HHHHHHHHHhccCCcEEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFI--DTAHNI--VEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFI--Dta~Ni--~~yi~~I~~~LKPGG~wIN 332 (397)
-..++.++.+|.+++-. ...++||+|+.=.+- ..+..+ .++++.++++|||||+++.
T Consensus 136 -------~dpRv~v~~~Dg~~~l~--~~~~~yDvIi~D~~dp~~~~~~L~t~eFy~~~~~~L~p~Gv~v~ 196 (294)
T 3o4f_A 136 -------DDPRFKLVIDDGVNFVN--QTSQTFDVIISDCTDPIGPGESLFTSAFYEGCKRCLNPGGIFVA 196 (294)
T ss_dssp -------GCTTEEEEESCTTTTTS--CSSCCEEEEEESCCCCCCTTCCSSCCHHHHHHHHTEEEEEEEEE
T ss_pred -------CCCcEEEEechHHHHHh--hccccCCEEEEeCCCcCCCchhhcCHHHHHHHHHHhCCCCEEEE
Confidence 01247889999888643 346789999865431 111111 3799999999999999995
|
| >1m6y_A S-adenosyl-methyltransferase MRAW; SAM-dependent methyltransferase fold, protein-cofactor product complex, structural genomics, PSI; HET: SAH; 1.90A {Thermotoga maritima} SCOP: a.60.13.1 c.66.1.23 PDB: 1n2x_A* | Back alignment and structure |
|---|
Probab=98.00 E-value=1.1e-05 Score=78.55 Aligned_cols=40 Identities=15% Similarity=0.050 Sum_probs=36.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~ 228 (397)
++.+|||+|||+|.++..|+++ |..|+|+|.|..|+..|+
T Consensus 26 ~g~~vLD~g~G~G~~s~~la~~~~~~~VigvD~d~~al~~A~ 67 (301)
T 1m6y_A 26 DEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAE 67 (301)
T ss_dssp TTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEEeCCcCHHHHHHHHHCCCCEEEEEECCHHHHHHHH
Confidence 5679999999999999999998 589999999999998776
|
| >2qy6_A UPF0209 protein YFCK; structural genomics, unknown function, PSI-2, protein struct initiative; 2.00A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.99 E-value=1.4e-05 Score=76.17 Aligned_cols=145 Identities=17% Similarity=0.100 Sum_probs=82.0
Q ss_pred CCCeEEEecCCCChhHHHHHHc-------C-------CeEEEEeCC---HHHHHHHHhhh----hcccccCccccccccc
Q 015966 189 SPPACLVPGAGLGRLALEISHL-------G-------FISQGNEFS---YYMMICSSFIL----NHTETAGEWNIYPWIH 247 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-------G-------f~V~GnD~S---~~ML~~s~fiL----n~~~~~~~~~IyPfi~ 247 (397)
+..+||++|+|+|..+..+++. + -.++++|.. ..||..+.... ..++. -...||-
T Consensus 60 ~~~~ILEiGfGtG~n~l~~~~~~~~~~~~~p~~~~~~l~~isiE~~p~~~~~l~~a~~~~p~l~~~a~~--l~~~w~~-- 135 (257)
T 2qy6_A 60 PLFVVAESGFGTGLNFLTLWQAFDQFREAHPQAQLQRLHFISFEKFPLTRADLALAHQHWPELAPWAEQ--LQAQWPM-- 135 (257)
T ss_dssp SEEEEEESCCTTSHHHHHHHHHHHHHHHHCTTSSCCEEEEEEEESSCCCHHHHHHHHTTCGGGHHHHHH--HHHTCCC--
T ss_pred CCCEEEEECCChHHHHHHHHHHHHhhhhhCCCCCcceeEEEEEECCcCCHHHHHHHHhcChhHHHHHHH--HHHhccc--
Confidence 5679999999999988776543 2 368899954 47776442100 00000 0000110
Q ss_pred cccCCCCcccCccccccCCCCCCC-CCCCCcceeEecccccccCCCCCC----CCccEEEEeec-cCChhh--HHHHHHH
Q 015966 248 SNCNSLSDSDQLRPVSIPDIHPAS-AGITEGFSMCGGDFVEVYSDPSQV----GAWDAVVTCFF-IDTAHN--IVEYIEI 319 (397)
Q Consensus 248 ~~Sn~~s~~~qlr~v~iPDv~p~~-~~~~~~ls~~~GDF~ely~~~~~~----~~fD~VvT~FF-IDta~N--i~~yi~~ 319 (397)
.+|.+.-.. .....++.++.||..++.. ... ..||+|+--=| -...+. -.++|+.
T Consensus 136 ---------------~~~g~~r~~~~~~~~~l~l~~GDa~~~l~--~~~~~~~~~~D~iflD~fsp~~~p~lw~~~~l~~ 198 (257)
T 2qy6_A 136 ---------------PLPGCHRLLLDEGRVTLDLWFGDINELIS--QLDDSLNQKVDAWFLDGFAPAKNPDMWTQNLFNA 198 (257)
T ss_dssp ---------------SCSEEEEEEEC--CEEEEEEESCHHHHGG--GSCGGGTTCEEEEEECSSCTTTCGGGCCHHHHHH
T ss_pred ---------------cccchhheeccCCceEEEEEECcHHHHHh--hcccccCCeEEEEEECCCCcccChhhcCHHHHHH
Confidence 001000000 0001247899999988543 112 27898853211 111111 2479999
Q ss_pred HHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 320 ISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 320 I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
++++|||||+++.+.. ...+++.+..+||++.+..
T Consensus 199 l~~~L~pGG~l~tysa--------------------a~~vrr~L~~aGF~v~~~~ 233 (257)
T 2qy6_A 199 MARLARPGGTLATFTS--------------------AGFVRRGLQEAGFTMQKRK 233 (257)
T ss_dssp HHHHEEEEEEEEESCC--------------------BHHHHHHHHHHTEEEEEEC
T ss_pred HHHHcCCCcEEEEEeC--------------------CHHHHHHHHHCCCEEEeCC
Confidence 9999999999995211 1257888889999988643
|
| >2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A | Back alignment and structure |
|---|
Probab=97.99 E-value=4.4e-06 Score=79.91 Aligned_cols=104 Identities=14% Similarity=0.093 Sum_probs=64.7
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCC
Q 015966 191 PACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPA 270 (397)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~ 270 (397)
.+|||+|||+|+.++++|.+|..|+|+|.|..|...++..+..+..... +...
T Consensus 90 ~~VLDl~~G~G~dal~lA~~g~~V~~vE~~~~~~~l~~~~l~~a~~~~~-------------------~~~~-------- 142 (258)
T 2oyr_A 90 PDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAE-------------------IGGW-------- 142 (258)
T ss_dssp CCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTT-------------------THHH--------
T ss_pred CEEEEcCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHHHhhHh-------------------hhhh--------
Confidence 7999999999999999999999999999999987766654443321000 0000
Q ss_pred CCCCCCcceeEecccccccCCCCCCCCccEEEEe-eccCChhhHHHHHHHHHHhccCCc
Q 015966 271 SAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-FFIDTAHNIVEYIEIISRILKDGG 328 (397)
Q Consensus 271 ~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~-FFIDta~Ni~~yi~~I~~~LKPGG 328 (397)
+..++.++.+|..++.. ...+.||+|+.- -|-..... ..++...++|++.|
T Consensus 143 ---l~~~i~~~~~D~~~~L~--~~~~~fDvV~lDP~y~~~~~s--aavkk~~~~lr~l~ 194 (258)
T 2oyr_A 143 ---LQERLQLIHASSLTALT--DITPRPQVVYLDPMFPHKQKS--ALVKKEMRVFQSLV 194 (258)
T ss_dssp ---HHHHEEEEESCHHHHST--TCSSCCSEEEECCCCCCCCC-------HHHHHHHHHS
T ss_pred ---hhcCEEEEECCHHHHHH--hCcccCCEEEEcCCCCCcccc--hHHHHHHHHHHHhh
Confidence 01247889999887532 122479999764 23222111 34555666666644
|
| >3s1s_A Restriction endonuclease bpusi; PD--(D/E)XK catalytic motif, gamma-N6M-adenosine methyltrans S-adenosyl-methionine binding, hydrolase; HET: SAH; 2.35A {Bacillus pumilus} | Back alignment and structure |
|---|
Probab=97.98 E-value=3.3e-05 Score=84.75 Aligned_cols=39 Identities=18% Similarity=0.055 Sum_probs=34.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcC-----CeEEEEeCCHHHHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHLG-----FISQGNEFSYYMMICS 227 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G-----f~V~GnD~S~~ML~~s 227 (397)
++.+|||||||+|.+...++++. ..+.|+|++..++..|
T Consensus 321 ~g~rVLDPaCGSG~FLIaaA~~l~ei~~~~IyGvEIDp~Al~LA 364 (878)
T 3s1s_A 321 EDEVISDPAAGSGNLLATVSAGFNNVMPRQIWANDIETLFLELL 364 (878)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTSTTCCGGGEEEECSCGGGHHHH
T ss_pred CCCEEEECCCCccHHHHHHHHHhcccCCCeEEEEECCHHHHHHH
Confidence 57799999999999999999864 4689999999999888
|
| >1m6e_X S-adenosyl-L-methionnine:salicylic acid carboxyl methyltransferase; rossmann fold, protein-small molecule complex; HET: SAH SAL; 3.00A {Clarkia breweri} SCOP: c.66.1.35 | Back alignment and structure |
|---|
Probab=97.98 E-value=1.8e-05 Score=79.29 Aligned_cols=148 Identities=14% Similarity=0.081 Sum_probs=88.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc------------------CCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccccc
Q 015966 189 SPPACLVPGAGLGRLALEISHL------------------GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~------------------Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~S 250 (397)
+..+|+|+||++|..+..++.. .++|..||+..-+....-..|. +|.
T Consensus 51 ~~~~IaDlGCs~G~Nt~~~v~~ii~~i~~~~~~~~~~~~pe~~v~~nDLp~NDFntlF~~L~-----------~~~---- 115 (359)
T 1m6e_X 51 TRLAIADLGCSSGPNALFAVTELIKTVEELRKKMGRENSPEYQIFLNDLPGNDFNAIFRSLP-----------IEN---- 115 (359)
T ss_dssp SEECCEEESCCSSTTTTTGGGTTHHHHHHHHHSSSCSSCCEEEEEEEECTTSCHHHHHTTTT-----------TSC----
T ss_pred CceEEEecCCCCCcchHHHHHHHHHHHHHHHHhcCCCCCCceEEEecCCCchHHHHHHHhcc-----------hhc----
Confidence 4678999999999988766554 3678888888776532211110 000
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee---ccCC------------------
Q 015966 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDT------------------ 309 (397)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F---FIDt------------------ 309 (397)
. .. +++- +.-+.|.| |.-....+++|+|++.+ ++..
T Consensus 116 ~----~~--~~~f--------------~~gvpgSF---y~rlfp~~S~d~v~Ss~aLHWls~~p~~l~~nkg~i~~~~~~ 172 (359)
T 1m6e_X 116 D----VD--GVCF--------------INGVPGSF---YGRLFPRNTLHFIHSSYSLMWLSQVPIGIESNKGNIYMANTC 172 (359)
T ss_dssp S----CT--TCEE--------------EEEEESCS---SSCCSCTTCBSCEEEESCTTBCSSCCSCCCCCTTTTSSCSSS
T ss_pred c----cC--CCEE--------------EEecchhh---hhccCCCCceEEEEehhhhhhcccCchhhhccCCceEecCCC
Confidence 0 00 0000 23344555 43334578999999886 3322
Q ss_pred ------------hhhHHHHHHHHHHhccCCcEEEE-------ecC------Ccch-hhhc------cCC--C------CC
Q 015966 310 ------------AHNIVEYIEIISRILKDGGVWIN-------LGP------LLYH-FADL------YGQ--E------DE 349 (397)
Q Consensus 310 ------------a~Ni~~yi~~I~~~LKPGG~wIN-------~GP------LlYh-~~d~------~g~--~------~~ 349 (397)
..|...+|+..++.|||||++|- .+| .+|. .... .|. . .-
T Consensus 173 p~~v~~ay~~Qf~~D~~~FL~~Ra~EL~pGG~mvl~~~gr~~~~~~~~~~~~~~~~l~~al~~mv~eGli~~ek~d~f~~ 252 (359)
T 1m6e_X 173 PQSVLNAYYKQFQEDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNI 252 (359)
T ss_dssp CCTTSCCSHHHHHHHHHHHHHHHHHHBCTTCEEEEEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceEEEEEecCCCCCccccchHHHHHHHHHHHHHHHHccccchhhhhccCC
Confidence 13455679999999999999993 222 2231 1110 121 0 11
Q ss_pred ccccCCHHHHHHHHHhC-CCEEEEEe
Q 015966 350 MSIELSLEDVKRVALHY-GFEFEKEK 374 (397)
Q Consensus 350 ~~ieLS~EEl~~ll~~~-GFeii~e~ 374 (397)
..+..|.+|++.++++. +|++.+.+
T Consensus 253 P~y~ps~~E~~~~ie~~G~F~i~~~e 278 (359)
T 1m6e_X 253 PQYTPSPTEVEAEILKEGSFLIDHIE 278 (359)
T ss_dssp CCBCCCSHHHHHHHHHTTTBCCEEEE
T ss_pred CccCCCHHHHHHHHHHcCCceEEEEE
Confidence 24567999999999988 55887744
|
| >2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str} | Back alignment and structure |
|---|
Probab=97.94 E-value=1.6e-05 Score=70.84 Aligned_cols=46 Identities=9% Similarity=-0.176 Sum_probs=39.6
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCC-hhHHHHHH-cCCeEEEEeCCHHH
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLG-RLALEISH-LGFISQGNEFSYYM 223 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlG-RLa~eLA~-~Gf~V~GnD~S~~M 223 (397)
.|.++|.+.+. .+.+||++|||.| |.|..||+ .|++|+++|++...
T Consensus 24 ~LaeYI~~~~~-----~~~rVlEVG~G~g~~vA~~La~~~g~~V~atDInp~A 71 (153)
T 2k4m_A 24 DLAVYIIRCSG-----PGTRVVEVGAGRFLYVSDYIRKHSKVDLVLTDIKPSH 71 (153)
T ss_dssp HHHHHHHHHSC-----SSSEEEEETCTTCCHHHHHHHHHSCCEEEEECSSCSS
T ss_pred HHHHHHHhcCC-----CCCcEEEEccCCChHHHHHHHHhCCCeEEEEECCccc
Confidence 37788887764 4569999999999 89999997 99999999999854
|
| >3ll7_A Putative methyltransferase; methytransferase, structural genomics, MCSG, PSI-2, protein initiative; HET: MSE; 1.80A {Porphyromonas gingivalis} | Back alignment and structure |
|---|
Probab=97.89 E-value=1.2e-05 Score=81.88 Aligned_cols=40 Identities=10% Similarity=-0.073 Sum_probs=37.8
Q ss_pred CCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHh
Q 015966 190 PPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSF 229 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~f 229 (397)
+.+|||+|||+|..+..||+.|..|+|+|+|..|+..++.
T Consensus 94 g~~VLDLgcG~G~~al~LA~~g~~V~~VD~s~~~l~~Ar~ 133 (410)
T 3ll7_A 94 GTKVVDLTGGLGIDFIALMSKASQGIYIERNDETAVAARH 133 (410)
T ss_dssp TCEEEESSCSSSHHHHHHHTTCSEEEEEESCHHHHHHHHH
T ss_pred CCEEEEeCCCchHHHHHHHhcCCEEEEEECCHHHHHHHHH
Confidence 6799999999999999999999999999999999998873
|
| >3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei} | Back alignment and structure |
|---|
Probab=97.86 E-value=1.7e-05 Score=76.36 Aligned_cols=40 Identities=15% Similarity=0.030 Sum_probs=37.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe----EEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFI----SQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~----V~GnD~S~~ML~~s~ 228 (397)
++.+|||+|||+|.++..|+++|.. |+|+|+|..|+..++
T Consensus 42 ~~~~VLEIG~G~G~lt~~La~~~~~~~~~V~avDid~~~l~~a~ 85 (279)
T 3uzu_A 42 RGERMVEIGPGLGALTGPVIARLATPGSPLHAVELDRDLIGRLE 85 (279)
T ss_dssp TTCEEEEECCTTSTTHHHHHHHHCBTTBCEEEEECCHHHHHHHH
T ss_pred CcCEEEEEccccHHHHHHHHHhCCCcCCeEEEEECCHHHHHHHH
Confidence 5679999999999999999999988 999999999998765
|
| >2b9e_A NOL1/NOP2/SUN domain family, member 5 isoform 2; methytransferase, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.65A {Homo sapiens} SCOP: c.66.1.38 | Back alignment and structure |
|---|
Probab=97.75 E-value=0.00015 Score=70.60 Aligned_cols=40 Identities=8% Similarity=-0.050 Sum_probs=35.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~ 228 (397)
++.+|||+|||+|..+..||.+ +-.|+|+|+|..|+..++
T Consensus 102 ~g~~VLDlcaG~G~kt~~la~~~~~~g~V~a~D~~~~~l~~~~ 144 (309)
T 2b9e_A 102 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMA 144 (309)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred CCCEEEEeCCChhHHHHHHHHHhCCCCEEEEEeCCHHHHHHHH
Confidence 5679999999999999999985 258999999999998766
|
| >3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A* | Back alignment and structure |
|---|
Probab=97.60 E-value=9.6e-05 Score=74.66 Aligned_cols=113 Identities=14% Similarity=0.141 Sum_probs=74.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+||++|-|.|..+.++.+..- .|+.+|+...++.+++--+ |..... ....
T Consensus 205 ~pkrVLIIGgGdG~~~revlkh~~~~V~~VEIDp~VVe~ar~yf------------p~~~~~-----------~~d~--- 258 (381)
T 3c6k_A 205 TGKDVLILGGGDGGILCEIVKLKPKMVTMVEIDQMVIDGCKKYM------------RKTCGD-----------VLDN--- 258 (381)
T ss_dssp TTCEEEEEECTTCHHHHHHHTTCCSEEEEEESCHHHHHHHHHHC------------CC---------------CCSS---
T ss_pred CCCeEEEECCCcHHHHHHHHhcCCceeEEEccCHHHHHHHHhhc------------hhhhhh-----------hhcc---
Confidence 457999999999999999998654 6999999999998776211 111000 0000
Q ss_pred CCCCCCCCCcceeEecccccccCC-CCCCCCccEEEEeecc---CC-----hhhH--HHHHHHHHHhccCCcEEEE
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTCFFI---DT-----AHNI--VEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~-~~~~~~fD~VvT~FFI---Dt-----a~Ni--~~yi~~I~~~LKPGG~wIN 332 (397)
+..+++.++.+|.+++-.. +...++||+|+.=.|- .+ +..+ .++++.++++|||||+++.
T Consensus 259 -----pr~~rv~vii~Da~~fl~~~~~~~~~yDvIIvDl~D~~~s~~p~g~a~~Lft~eFy~~~~~~L~p~GVlv~ 329 (381)
T 3c6k_A 259 -----LKGDCYQVLIEDCIPVLKRYAKEGREFDYVINDLTAVPISTSPEEDSTWEFLRLILDLSMKVLKQDGKYFT 329 (381)
T ss_dssp -----SEETTEEEEESCHHHHHHHHHHHTCCEEEEEEECCSSCCCCC----CHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred -----ccccceeeehHHHHHHHHhhhhccCceeEEEECCCCCcccCcccCcchHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1113478888998764310 0124689999876542 11 1122 4688999999999999996
|
| >3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00053 Score=63.48 Aligned_cols=99 Identities=14% Similarity=0.028 Sum_probs=66.5
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
+..+||+.|| |.-+..+|++ |-.|+.+|.+..+...++-.+..+.-+
T Consensus 30 ~a~~VLEiGt--GySTl~lA~~~~g~VvtvE~d~~~~~~ar~~l~~~g~~------------------------------ 77 (202)
T 3cvo_A 30 EAEVILEYGS--GGSTVVAAELPGKHVTSVESDRAWARMMKAWLAANPPA------------------------------ 77 (202)
T ss_dssp HCSEEEEESC--SHHHHHHHTSTTCEEEEEESCHHHHHHHHHHHHHSCCC------------------------------
T ss_pred CCCEEEEECc--hHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC------------------------------
Confidence 3469999998 5788888887 789999999999998777444321100
Q ss_pred CCCCCCCCCcceeEecccccc-----------------c-----CCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhcc
Q 015966 268 HPASAGITEGFSMCGGDFVEV-----------------Y-----SDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILK 325 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~el-----------------y-----~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LK 325 (397)
...++.++.||..+. | .. ...+.||+| |||-.. ...|+..+.+.||
T Consensus 78 ------~~~~I~~~~gda~~~~~wg~p~~~~~~~~l~~~~~~i~~~-~~~~~fDlI----fIDg~k-~~~~~~~~l~~l~ 145 (202)
T 3cvo_A 78 ------EGTEVNIVWTDIGPTGDWGHPVSDAKWRSYPDYPLAVWRT-EGFRHPDVV----LVDGRF-RVGCALATAFSIT 145 (202)
T ss_dssp ------TTCEEEEEECCCSSBCGGGCBSSSTTGGGTTHHHHGGGGC-TTCCCCSEE----EECSSS-HHHHHHHHHHHCS
T ss_pred ------CCCceEEEEeCchhhhcccccccchhhhhHHHHhhhhhcc-ccCCCCCEE----EEeCCC-chhHHHHHHHhcC
Confidence 011244555554332 1 00 123689998 577653 3488888889999
Q ss_pred CCcEEE
Q 015966 326 DGGVWI 331 (397)
Q Consensus 326 PGG~wI 331 (397)
|||+.|
T Consensus 146 ~GG~Iv 151 (202)
T 3cvo_A 146 RPVTLL 151 (202)
T ss_dssp SCEEEE
T ss_pred CCeEEE
Confidence 999998
|
| >3evf_A RNA-directed RNA polymerase NS5; NS5 methyltransferase, RNA CAP binding, binding, capsid protein; HET: GTA SAH; 1.45A {Yellow fever virus} SCOP: c.66.1.0 PDB: 3evb_A* 3evc_A* 3evd_A* 3eve_A* 3eva_A* | Back alignment and structure |
|---|
Probab=97.57 E-value=0.00043 Score=67.19 Aligned_cols=116 Identities=8% Similarity=-0.016 Sum_probs=70.0
Q ss_pred hchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHHHHHHHhhhhcccccCcccccccc
Q 015966 169 QCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWI 246 (397)
Q Consensus 169 ~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi 246 (397)
.+.-.+++..++.+- ++..+|||+|||.|..+...|++ |. .|.|+|++..|.. + |
T Consensus 58 RaA~KL~ei~ek~~l----~~~~~VLDLGaAPGGWSQvAa~~~~~~~v~g~dVGvDl~~----------~-------p-- 114 (277)
T 3evf_A 58 RGTAKLRWFHERGYV----KLEGRVIDLGCGRGGWCYYAAAQKEVSGVKGFTLGRDGHE----------K-------P-- 114 (277)
T ss_dssp THHHHHHHHHHTTSS----CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTTCC----------C-------C--
T ss_pred cHHHHHHHHHHhCCC----CCCCEEEEecCCCCHHHHHHHHhcCCCcceeEEEeccCcc----------c-------c--
Confidence 334457777776332 35669999999999999988876 54 5788888865410 0 0
Q ss_pred ccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChh------hHHHHHHHH
Q 015966 247 HSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH------NIVEYIEII 320 (397)
Q Consensus 247 ~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~------Ni~~yi~~I 320 (397)
+|.. ..+.++..+.+++ ++... ..+.||+|++-...++.. ..+..++.+
T Consensus 115 -----------------i~~~-----~~g~~ii~~~~~~-dv~~l--~~~~~DlVlsD~apnsG~~~~D~~rs~~LL~~a 169 (277)
T 3evf_A 115 -----------------MNVQ-----SLGWNIITFKDKT-DIHRL--EPVKCDTLLCDIGESSSSSVTEGERTVRVLDTV 169 (277)
T ss_dssp -----------------CCCC-----BTTGGGEEEECSC-CTTTS--CCCCCSEEEECCCCCCSCHHHHHHHHHHHHHHH
T ss_pred -----------------cccC-----cCCCCeEEEeccc-eehhc--CCCCccEEEecCccCcCchHHHHHHHHHHHHHH
Confidence 0000 0001233344443 32221 247899999865333211 122347888
Q ss_pred HHhccCC-cEEEE
Q 015966 321 SRILKDG-GVWIN 332 (397)
Q Consensus 321 ~~~LKPG-G~wIN 332 (397)
.++|||| |.||-
T Consensus 170 ~~~LkpG~G~FV~ 182 (277)
T 3evf_A 170 EKWLACGVDNFCV 182 (277)
T ss_dssp HHHHTTCCSEEEE
T ss_pred HHHhCCCCCeEEE
Confidence 9999999 99995
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=97.53 E-value=0.00013 Score=69.94 Aligned_cols=55 Identities=20% Similarity=0.147 Sum_probs=45.1
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhh
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFIL 231 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiL 231 (397)
.+++.|.+.+. .++..||||+||+|.++..++++|..+.|+|++..|+..|+--+
T Consensus 223 ~l~~~~i~~~~----~~~~~vlD~f~GsGt~~~~a~~~g~~~~g~e~~~~~~~~a~~r~ 277 (297)
T 2zig_A 223 ELAERLVRMFS----FVGDVVLDPFAGTGTTLIAAARWGRRALGVELVPRYAQLAKERF 277 (297)
T ss_dssp HHHHHHHHHHC----CTTCEEEETTCTTTHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred HHHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHHHHH
Confidence 35555555543 25679999999999999999999999999999999998877433
|
| >2wk1_A NOVP; transferase, O-methyltransferase, novobiocin, TYLF superfamily; HET: SAH; 1.40A {Streptomyces caeruleus} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.001 Score=64.40 Aligned_cols=158 Identities=13% Similarity=0.120 Sum_probs=86.8
Q ss_pred HHHHHHhccccc----ChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-------CCeEEEEeC
Q 015966 151 IIRNIVRDWAAE----GKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-------GFISQGNEF 219 (397)
Q Consensus 151 tL~q~~RDWS~e----G~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-------Gf~V~GnD~ 219 (397)
.++.+-+||... ...+|-.....++..+... ....+||+.|+..|+-+..+|.. +-.|+++|.
T Consensus 70 ~~r~~g~~~~~~~~tmv~~~r~~~L~~l~~~v~~~------~~pg~IlEiGv~~G~Sai~ma~~l~~~g~~~~kI~~~Dt 143 (282)
T 2wk1_A 70 EVRNEGRDWPANAHTMIGIKRLENIRQCVEDVIGN------NVPGDLVETGVWRGGACILMRGILRAHDVRDRTVWVADS 143 (282)
T ss_dssp HHHHTTCSCBSSCSCSSHHHHHHHHHHHHHHHHHT------TCCCEEEEECCTTSHHHHHHHHHHHHTTCCSCCEEEEEC
T ss_pred HHHhccccCCcccccccCHHHHHHHHHHHHHHHhc------CCCCcEEEeecCchHHHHHHHHHhHhcCCCCCEEEEEEC
Confidence 477888999654 3467766555566655542 14569999999999988887653 557889986
Q ss_pred CHHHHHHHHhhhhcccccCccccccccccccC-CCCcccCccccccCCCCCCCCCC-CCcceeEecccccccCCCCCCCC
Q 015966 220 SYYMMICSSFILNHTETAGEWNIYPWIHSNCN-SLSDSDQLRPVSIPDIHPASAGI-TEGFSMCGGDFVEVYSDPSQVGA 297 (397)
Q Consensus 220 S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn-~~s~~~qlr~v~iPDv~p~~~~~-~~~ls~~~GDF~ely~~~~~~~~ 297 (397)
-..+-..+.- ..... ..+.+ +.+.. ......+.|. .+. ..+. .+++.++.|||.+.... ...++
T Consensus 144 feG~pe~~~~--~~~~d-~~~~~----~~~~~~~~~~~~~ar~-n~~-----~~gl~~~~I~li~Gda~etL~~-~~~~~ 209 (282)
T 2wk1_A 144 FQGIPDVGED--GYAGD-RKMAL----HRRNSVLAVSEEEVRR-NFR-----NYDLLDEQVRFLPGWFKDTLPT-APIDT 209 (282)
T ss_dssp SSCSCCCCTT--SCHHH-HHHCG----GGGHHHHCCCHHHHHH-HHH-----HTTCCSTTEEEEESCHHHHSTT-CCCCC
T ss_pred CCCCCccccc--ccccc-ccccc----ccccccchhHHHHHHH-HHH-----HcCCCcCceEEEEeCHHHHHhh-CCCCC
Confidence 4322000000 00000 00000 00000 0000000000 000 0011 24589999999885431 12356
Q ss_pred ccEEEEeeccCCh--hhHHHHHHHHHHhccCCcEEEE
Q 015966 298 WDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 298 fD~VvT~FFIDta--~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
||+| |||.. .+..+||+.++..|+|||+.|-
T Consensus 210 ~d~v----fIDaD~y~~~~~~Le~~~p~L~pGGiIv~ 242 (282)
T 2wk1_A 210 LAVL----RMDGDLYESTWDTLTNLYPKVSVGGYVIV 242 (282)
T ss_dssp EEEE----EECCCSHHHHHHHHHHHGGGEEEEEEEEE
T ss_pred EEEE----EEcCCccccHHHHHHHHHhhcCCCEEEEE
Confidence 7766 66654 3567899999999999999994
|
| >4auk_A Ribosomal RNA large subunit methyltransferase M; YGDE; HET: TLA PGE; 1.90A {Escherichia coli} PDB: 4atn_A* 4b17_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0018 Score=65.22 Aligned_cols=120 Identities=13% Similarity=0.091 Sum_probs=81.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+||..|.-++.|+++|-.|+|+|... |--. +.
T Consensus 211 ~G~~vlDLGAaPGGWT~~l~~rg~~V~aVD~~~-l~~~----l~------------------------------------ 249 (375)
T 4auk_A 211 NGMWAVDLGACPGGWTYQLVKRNMWVYSVDNGP-MAQS----LM------------------------------------ 249 (375)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCEEEEECSSC-CCHH----HH------------------------------------
T ss_pred CCCEEEEeCcCCCHHHHHHHHCCCEEEEEEhhh-cChh----hc------------------------------------
Confidence 688999999999999999999999999999874 3100 00
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCC---cEEEEec-CCcchhhhcc
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDG---GVWINLG-PLLYHFADLY 344 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPG---G~wIN~G-PLlYh~~d~~ 344 (397)
...++.++++|..++.. ..+.+|+||+ |-+.+....++.+.+.|..| +...|+= |+...++
T Consensus 250 -----~~~~V~~~~~d~~~~~~---~~~~~D~vvs----Dm~~~p~~~~~l~~~wl~~~~~~~aI~~lKL~mk~~~~--- 314 (375)
T 4auk_A 250 -----DTGQVTWLREDGFKFRP---TRSNISWMVC----DMVEKPAKVAALMAQWLVNGWCRETIFNLKLPMKKRYE--- 314 (375)
T ss_dssp -----TTTCEEEECSCTTTCCC---CSSCEEEEEE----CCSSCHHHHHHHHHHHHHTTSCSEEEEEEECCSSSHHH---
T ss_pred -----cCCCeEEEeCccccccC---CCCCcCEEEE----cCCCChHHhHHHHHHHHhccccceEEEEEEecccchHH---
Confidence 01236788899877532 2468999988 76777667777777777665 5555532 2221111
Q ss_pred CCCCCccccCCHHHHHHHHHhCCCEE
Q 015966 345 GQEDEMSIELSLEDVKRVALHYGFEF 370 (397)
Q Consensus 345 g~~~~~~ieLS~EEl~~ll~~~GFei 370 (397)
.+.--.+.+...+...||..
T Consensus 315 ------~l~~~~~~i~~~l~~~g~~~ 334 (375)
T 4auk_A 315 ------EVSHNLAYIQAQLDEHGINA 334 (375)
T ss_dssp ------HHHHHHHHHHHHHHHTTCCE
T ss_pred ------HHHHHHHHHHHHHHhcCcch
Confidence 12234566777888888864
|
| >3ufb_A Type I restriction-modification system methyltran subunit; methyltransferase activity, transferase; 1.80A {Vibrio vulnificus} | Back alignment and structure |
|---|
Probab=96.96 E-value=0.0049 Score=64.24 Aligned_cols=40 Identities=18% Similarity=0.112 Sum_probs=31.6
Q ss_pred CCCeEEEecCCCChhHHHHHHc---------------CCeEEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHL---------------GFISQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---------------Gf~V~GnD~S~~ML~~s~ 228 (397)
.+.+||||+||+|.+....++. -..+.|+|+...|...|+
T Consensus 217 ~~~~I~DPacGsGgfL~~a~~~l~~~~~~~~~~~~~~~~~i~G~E~~~~~~~la~ 271 (530)
T 3ufb_A 217 LGESVLDPACGTGGFLVEAFEHLERQCKTVEDREVLQESSIFGGEAKSLPYLLVQ 271 (530)
T ss_dssp TTCCEEETTCTTTHHHHHHHHHHHTTCCSHHHHHHHHTCCEEEECCSHHHHHHHH
T ss_pred CCCEEEeCCCCcchHHHHHHHHHHHhccchhHHHHHhhhhhhhhhccHHHHHHHH
Confidence 5679999999999997665432 245899999999887766
|
| >3gcz_A Polyprotein; flavivirus, RNA capping, methyltransferase, viral enzyme STR ATP-binding, nucleotide-binding, RNA replication, structura genomics; HET: SAM; 1.70A {Yokose virus} | Back alignment and structure |
|---|
Probab=96.87 E-value=0.0021 Score=62.47 Aligned_cols=50 Identities=8% Similarity=-0.052 Sum_probs=37.0
Q ss_pred chHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHH
Q 015966 170 CYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYM 223 (397)
Q Consensus 170 ~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf-~V~GnD~S~~M 223 (397)
+.-.+++..++.+ - .++.+|||+|||.|..+...+++ |. .|.|+|++..|
T Consensus 75 AAfKL~ei~eK~~-L---k~~~~VLDLGaAPGGWsQvAa~~~gv~sV~GvdvG~d~ 126 (282)
T 3gcz_A 75 GSAKLRWMEERGY-V---KPTGIVVDLGCGRGGWSYYAASLKNVKKVMAFTLGVQG 126 (282)
T ss_dssp HHHHHHHHHHTTS-C---CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCCCTT
T ss_pred HHHHHHHHHHhcC-C---CCCCEEEEeCCCCCHHHHHHHHhcCCCeeeeEEeccCc
Confidence 4445777776642 1 35679999999999999988854 54 58899999865
|
| >1wg8_A Predicted S-adenosylmethionine-dependent methyltransferase; S-adenosyl-methyltransferase, MRAW; HET: SAM; 2.00A {Thermus thermophilus} SCOP: a.60.13.1 c.66.1.23 | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0024 Score=62.22 Aligned_cols=41 Identities=12% Similarity=-0.148 Sum_probs=37.6
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHh
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSF 229 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~f 229 (397)
++..+||.+||.|..+..|+++|..|+|+|.++.|+..|+-
T Consensus 22 ~gg~~VD~T~G~GGHS~~il~~~g~VigiD~Dp~Ai~~A~~ 62 (285)
T 1wg8_A 22 PGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKG 62 (285)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHH
T ss_pred CCCEEEEeCCCCcHHHHHHHHCCCEEEEEeCCHHHHHHHHh
Confidence 56799999999999999999998899999999999987763
|
| >2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0026 Score=61.33 Aligned_cols=94 Identities=16% Similarity=0.147 Sum_probs=59.5
Q ss_pred CCCCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHH--HHHHHHhhhhcccccCccccccccccccCCCCcccCccccc
Q 015966 188 ESPPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYY--MMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVS 263 (397)
Q Consensus 188 ~~~~rVLvPGCGlGRLa~eLA~~-Gf-~V~GnD~S~~--ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~ 263 (397)
+++.+|||+||+-|.-+...|++ |. .|.|..+... ++ ++.
T Consensus 72 kpg~~VVDLGaAPGGWSQvAa~~~~vg~V~G~vig~D~~~~------------------------------------P~~ 115 (269)
T 2px2_A 72 QPIGKVVDLGCGRGGWSYYAATMKNVQEVRGYTKGGPGHEE------------------------------------PML 115 (269)
T ss_dssp CCCEEEEEETCTTSHHHHHHTTSTTEEEEEEECCCSTTSCC------------------------------------CCC
T ss_pred CCCCEEEEcCCCCCHHHHHHhhhcCCCCceeEEEccccccC------------------------------------CCc
Confidence 47899999999999999888876 22 3445444332 10 000
Q ss_pred cCCCCCCCCCCCCc---ceeEec-ccccccCCCCCCCCccEEEEee-------ccCChhhHHHHHHHHHHhccCCc-EEE
Q 015966 264 IPDIHPASAGITEG---FSMCGG-DFVEVYSDPSQVGAWDAVVTCF-------FIDTAHNIVEYIEIISRILKDGG-VWI 331 (397)
Q Consensus 264 iPDv~p~~~~~~~~---ls~~~G-DF~ely~~~~~~~~fD~VvT~F-------FIDta~Ni~~yi~~I~~~LKPGG-~wI 331 (397)
+...+ +.|.+| ||+++- ...+|+|++=. .+|.+.-+ ..|+-..++||||| .|+
T Consensus 116 ---------~~~~Gv~~i~~~~G~Df~~~~-----~~~~DvVLSDMAPnSG~~~vD~~Rs~-~aL~~A~~~Lk~gG~~Fv 180 (269)
T 2px2_A 116 ---------MQSYGWNIVTMKSGVDVFYKP-----SEISDTLLCDIGESSPSAEIEEQRTL-RILEMVSDWLSRGPKEFC 180 (269)
T ss_dssp ---------CCSTTGGGEEEECSCCGGGSC-----CCCCSEEEECCCCCCSCHHHHHHHHH-HHHHHHHHHHTTCCSEEE
T ss_pred ---------ccCCCceEEEeeccCCccCCC-----CCCCCEEEeCCCCCCCccHHHHHHHH-HHHHHHHHHhhcCCcEEE
Confidence 00012 355557 998853 35799999742 34444333 36767779999999 777
Q ss_pred E
Q 015966 332 N 332 (397)
Q Consensus 332 N 332 (397)
-
T Consensus 181 v 181 (269)
T 2px2_A 181 I 181 (269)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >3eld_A Methyltransferase; flavivirus, RNA capping, guanylyltransfer viral enzyme structure; HET: SFG; 1.90A {Wesselsbron virus} PDB: 3elu_A* 3elw_A* 3ely_A* 3emb_A* 3emd_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0082 Score=58.82 Aligned_cols=73 Identities=12% Similarity=-0.004 Sum_probs=47.1
Q ss_pred chhhHHHHHHHHHHhcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CC-eEEEEeCC
Q 015966 143 ADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GF-ISQGNEFS 220 (397)
Q Consensus 143 ~d~dkv~stL~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf-~V~GnD~S 220 (397)
.|...+|..|+.=... +..=|..++-.+++..++.+- +++.+|||+||+.|..+..++++ |. .|.|+|++
T Consensus 43 ~dr~~ar~~l~~~~~~----~g~yrSRaa~KL~ei~ek~l~----~~g~~vlDLGaaPGgWsqva~~~~gv~sV~Gvdlg 114 (300)
T 3eld_A 43 VDRTAARRYLKEGRTD----VGISVSRGAAKIRWLHERGYL----RITGRVLDLGCGRGGWSYYAAAQKEVMSVKGYTLG 114 (300)
T ss_dssp ECCHHHHHHHHHTCSS----SCCCSSTTHHHHHHHHHHTSC----CCCEEEEEETCTTCHHHHHHHTSTTEEEEEEECCC
T ss_pred ccHHHHHHHHHcCCcc----CCCccchHHHHHHHHHHhCCC----CCCCEEEEcCCCCCHHHHHHHHhcCCceeeeEEec
Confidence 4455666666543211 011233344457777766321 36789999999999999999975 54 58899998
Q ss_pred HHH
Q 015966 221 YYM 223 (397)
Q Consensus 221 ~~M 223 (397)
..|
T Consensus 115 ~~~ 117 (300)
T 3eld_A 115 IEG 117 (300)
T ss_dssp CTT
T ss_pred ccc
Confidence 754
|
| >1g60_A Adenine-specific methyltransferase MBOIIA; structural genomics, DNA methylation, S- adenosylmethionine, PSI, protein structure initiative; HET: SAM; 1.74A {Moraxella bovis} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0077 Score=56.46 Aligned_cols=51 Identities=16% Similarity=0.074 Sum_probs=42.9
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (397)
+++.|.+.+. .++..||||.||+|..+...+++|..+.|+|++..++..|+
T Consensus 201 l~~~~i~~~~----~~~~~vlD~f~GsGtt~~~a~~~gr~~ig~e~~~~~~~~~~ 251 (260)
T 1g60_A 201 LIERIIRASS----NPNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQAN 251 (260)
T ss_dssp HHHHHHHHHC----CTTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHcCCeEEEEeCCHHHHHHHH
Confidence 5555555543 25679999999999999999999999999999999988776
|
| >2c7p_A Modification methylase HHAI; DNA methyltransferase, methyltransferase, base flipping, restriction system, transferase; HET: 5CM A1P SAH EPE CIT; 1.7A {Haemophilus haemolyticus} SCOP: c.66.1.26 PDB: 10mh_A* 1m0e_A* 1mht_A* 1hmy_A* 1skm_A* 2c7o_A* 2c7q_A* 2hmy_B* 2hr1_A* 3eeo_A* 3mht_A* 4mht_A* 5mht_A* 6mht_A* 7mht_A* 8mht_A* 9mht_A* 2zcj_A* 2z6u_A* 2z6q_A* ... | Back alignment and structure |
|---|
Probab=96.07 E-value=0.071 Score=52.13 Aligned_cols=40 Identities=23% Similarity=0.204 Sum_probs=35.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~ 228 (397)
.+.+|||+-||.|.+...+.++|++ |.++|++...+.+.+
T Consensus 10 ~~~~~~dLFaG~Gg~~~g~~~aG~~~v~~~e~d~~a~~t~~ 50 (327)
T 2c7p_A 10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYE 50 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHH
T ss_pred CCCcEEEECCCcCHHHHHHHHCCCeEEEEEeCCHHHHHHHH
Confidence 4579999999999999999999997 568999998876554
|
| >4fzv_A Putative methyltransferase NSUN4; mterf fold, methyltransferase fold, rRNA methyltransferase, mitochondria, transferase; HET: MSE SAM; 2.00A {Homo sapiens} PDB: 4fp9_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.045 Score=54.53 Aligned_cols=109 Identities=16% Similarity=0.078 Sum_probs=69.9
Q ss_pred CCCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 188 ESPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 188 ~~~~rVLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
.++.+|||..||-|.=+..||.+|- .|+++|+|..=+...+-.+....- +.+
T Consensus 147 ~pg~~VLD~CAaPGGKT~~la~~~~~~~l~A~D~~~~R~~~l~~~l~r~~~-----------------------~~~--- 200 (359)
T 4fzv_A 147 QPGDIVLDLCAAPGGKTLALLQTGCCRNLAANDLSPSRIARLQKILHSYVP-----------------------EEI--- 200 (359)
T ss_dssp CTTEEEEESSCTTCHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHHHHSC-----------------------TTT---
T ss_pred CCCCEEEEecCCccHHHHHHHHhcCCCcEEEEcCCHHHHHHHHHHHHHhhh-----------------------hhh---
Confidence 3678999999999999999999876 599999999876544433321100 000
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEE---e-----ecc---------CChhhH-------HHHHHHHH
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---C-----FFI---------DTAHNI-------VEYIEIIS 321 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT---~-----FFI---------Dta~Ni-------~~yi~~I~ 321 (397)
....++.....|.+.+.. ...+.||.|+. | -.+ .+..++ .+.|+...
T Consensus 201 -------~~~~~v~v~~~D~~~~~~--~~~~~fD~VLlDaPCSg~g~g~~r~~~~~~~~~~~~~~~~l~~lQ~~iL~~a~ 271 (359)
T 4fzv_A 201 -------RDGNQVRVTSWDGRKWGE--LEGDTYDRVLVDVPCTTDRHSLHEEENNIFKRSRKKERQILPVLQVQLLAAGL 271 (359)
T ss_dssp -------TTSSSEEEECCCGGGHHH--HSTTCEEEEEEECCCCCHHHHTTCCTTCTTSGGGHHHHHTHHHHHHHHHHHHH
T ss_pred -------ccCCceEEEeCchhhcch--hccccCCEEEECCccCCCCCcccccChhhhhhCCHHHHHHHHHHHHHHHHHHH
Confidence 011235667778766421 12478999983 1 011 111222 24678888
Q ss_pred HhccCCcEEE
Q 015966 322 RILKDGGVWI 331 (397)
Q Consensus 322 ~~LKPGG~wI 331 (397)
++|||||++|
T Consensus 272 ~~lkpGG~LV 281 (359)
T 4fzv_A 272 LATKPGGHVV 281 (359)
T ss_dssp HTEEEEEEEE
T ss_pred hcCCCCcEEE
Confidence 9999999998
|
| >3r24_A NSP16, 2'-O-methyl transferase; methyltransferase, zinc-finger, transferase, viral protein; HET: SAM; 2.00A {Sars coronavirus} | Back alignment and structure |
|---|
Probab=95.38 E-value=0.043 Score=54.20 Aligned_cols=73 Identities=15% Similarity=0.186 Sum_probs=45.4
Q ss_pred eEecccccccCCCCCCCCccEEEEeec------cCCh----hhHHH-HHHHHHHhccCCcEEEEecCCcchhhhccCCCC
Q 015966 280 MCGGDFVEVYSDPSQVGAWDAVVTCFF------IDTA----HNIVE-YIEIISRILKDGGVWINLGPLLYHFADLYGQED 348 (397)
Q Consensus 280 ~~~GDF~ely~~~~~~~~fD~VvT~FF------IDta----~Ni~~-yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~ 348 (397)
+++||+.+++. .+.||+|++=.. .|.. ..+.+ .++-+.+.|||||.|+-- .|+..
T Consensus 156 ~IqGD~~~~~~----~~k~DLVISDMAPNtTG~~D~d~~Rs~~L~ElALdfA~~~LkpGGsFvVK-----VFQGs----- 221 (344)
T 3r24_A 156 TLIGDCATVHT----ANKWDLIISDMYDPRTKHVTKENDSKEGFFTYLCGFIKQKLALGGSIAVK-----ITEHS----- 221 (344)
T ss_dssp EEESCGGGEEE----SSCEEEEEECCCCTTSCSSCSCCCCCCTHHHHHHHHHHHHEEEEEEEEEE-----ECSSS-----
T ss_pred EEEcccccccc----CCCCCEEEecCCCCcCCccccchhHHHHHHHHHHHHHHHhCcCCCEEEEE-----EecCC-----
Confidence 38899887654 478999997532 3322 22444 455566899999999941 12221
Q ss_pred CccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 349 EMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 349 ~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
. .+++.++.+ -|+-++..
T Consensus 222 ----g--~~~L~~lrk--~F~~VK~f 239 (344)
T 3r24_A 222 ----W--NADLYKLMG--HFSWWTAF 239 (344)
T ss_dssp ----C--CHHHHHHHT--TEEEEEEE
T ss_pred ----C--HHHHHHHHh--hCCeEEEE
Confidence 1 255666663 58877644
|
| >3g7u_A Cytosine-specific methyltransferase; DNA-binding, NAD-binding, structural GENO protein structure initiative, PSI; 1.75A {Escherichia coli O157} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.075 Score=53.03 Aligned_cols=38 Identities=18% Similarity=0.174 Sum_probs=33.5
Q ss_pred CeEEEecCCCChhHHHHHHcCCeE-EEEeCCHHHHHHHH
Q 015966 191 PACLVPGAGLGRLALEISHLGFIS-QGNEFSYYMMICSS 228 (397)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~Gf~V-~GnD~S~~ML~~s~ 228 (397)
.+|||+-||.|.++..+.++||++ .++|++...+.+.+
T Consensus 3 ~~vidLFsG~GGlslG~~~aG~~~v~avE~d~~a~~t~~ 41 (376)
T 3g7u_A 3 LNVIDLFSGVGGLSLGAARAGFDVKMAVEIDQHAINTHA 41 (376)
T ss_dssp CEEEEETCTTSHHHHHHHHHTCEEEEEECSCHHHHHHHH
T ss_pred CeEEEEccCcCHHHHHHHHCCCcEEEEEeCCHHHHHHHH
Confidence 589999999999999999999985 59999998876544
|
| >1rjd_A PPM1P, carboxy methyl transferase for protein phosphatase 2A catalytic subunit; SAM dependent methyltransferase; HET: SAM; 1.80A {Saccharomyces cerevisiae} SCOP: c.66.1.37 PDB: 1rje_A* 1rjf_A 1rjg_A* 2ob2_A* 2ob1_A | Back alignment and structure |
|---|
Probab=95.34 E-value=0.21 Score=49.07 Aligned_cols=158 Identities=11% Similarity=0.048 Sum_probs=86.8
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
+...|+.+|||+...++.|... +..+.-+|+ +.++..-+-++........ .+. . .. .-|.
T Consensus 97 ~~~qVV~LGaGlDTr~~RL~~~~~~~~~~EvD~-P~vi~~K~~~l~~~~~l~~-~l~----~-------~~-----~~~~ 158 (334)
T 1rjd_A 97 EKVQVVNLGCGSDLRMLPLLQMFPHLAYVDIDY-NESVELKNSILRESEILRI-SLG----L-------SK-----EDTA 158 (334)
T ss_dssp SSEEEEEETCTTCCTHHHHHHHCTTEEEEEEEC-HHHHHHHHHHHHHSHHHHH-HHT----C-------CS-----SCCC
T ss_pred CCcEEEEeCCCCccHHHHhcCcCCCCEEEECCC-HHHHHHHHHHhhhccchhh-hcc----c-------cc-----cccc
Confidence 3568999999999999999875 556677777 5555443333322100000 000 0 00 0000
Q ss_pred CCCCCCCCCCcceeEeccccccc-------CCCCCCCCccEEEEe---eccCChhhHHHHHHHHHHhccCCcEEEEe---
Q 015966 267 IHPASAGITEGFSMCGGDFVEVY-------SDPSQVGAWDAVVTC---FFIDTAHNIVEYIEIISRILKDGGVWINL--- 333 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely-------~~~~~~~~fD~VvT~---FFIDta~Ni~~yi~~I~~~LKPGG~wIN~--- 333 (397)
.... .....+..++.+|+++.. ..+ ..+...++++- .|++.. .+...|+.|.+.+ |||.||++
T Consensus 159 ~~~~-~~~~~~~~~v~~DL~d~~w~~~ll~~~~-d~~~Ptl~iaEgvL~YL~~~-~~~~ll~~ia~~~-~~~~~v~~e~i 234 (334)
T 1rjd_A 159 KSPF-LIDQGRYKLAACDLNDITETTRLLDVCT-KREIPTIVISECLLCYMHNN-ESQLLINTIMSKF-SHGLWISYDPI 234 (334)
T ss_dssp CTTE-EEECSSEEEEECCTTCHHHHHHHHHTTC-CTTSCEEEEEESCGGGSCHH-HHHHHHHHHHHHC-SSEEEEEEEEC
T ss_pred cccc-ccCCCceEEEecCCCCcHHHHHHHHhcC-CCCCCEEEEEcchhhCCCHH-HHHHHHHHHHhhC-CCcEEEEEecc
Confidence 0000 001245788999988731 111 12334455432 467764 4778899999887 88999864
Q ss_pred cC---C-------cchhhhccCCCCCccc--cCCHHHHHHHHHhCCCE
Q 015966 334 GP---L-------LYHFADLYGQEDEMSI--ELSLEDVKRVALHYGFE 369 (397)
Q Consensus 334 GP---L-------lYh~~d~~g~~~~~~i--eLS~EEl~~ll~~~GFe 369 (397)
+| . ..++....| .+-.++ -.+.++..+.+.+.||+
T Consensus 235 ~~~~~~~~fg~~m~~~l~~~rg-~~l~~~~~y~s~~~~~~rl~~~Gf~ 281 (334)
T 1rjd_A 235 GGSQPNDRFGAIMQSNLKESRN-LEMPTLMTYNSKEKYASRWSAAPNV 281 (334)
T ss_dssp CCCSTTCCHHHHHHHHHHHHHC-CCCTTTTTTCSHHHHHGGGTTSSEE
T ss_pred CCCCCcchHHHHHHHHhhcccC-CcccccccCCCHHHHHHHHHHCCCC
Confidence 33 1 122222011 111122 25999999999999998
|
| >1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1 | Back alignment and structure |
|---|
Probab=95.30 E-value=0.028 Score=49.41 Aligned_cols=39 Identities=21% Similarity=0.129 Sum_probs=31.6
Q ss_pred CCCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHHHH
Q 015966 188 ESPPACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMMIC 226 (397)
Q Consensus 188 ~~~~rVLvPGC--GlGRLa~eLA~-~Gf~V~GnD~S~~ML~~ 226 (397)
+++.+||+.|+ |.|+.+..+++ .|+.|.+++.+...+..
T Consensus 37 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~ 78 (198)
T 1pqw_A 37 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREM 78 (198)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHH
T ss_pred CCCCEEEEeeCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHH
Confidence 36789999994 78888777765 59999999999887643
|
| >3vyw_A MNMC2; tRNA wobble uridine, modification enzyme, genetic CODE, 5- methylaminomethyl-2-thiouridine, methyltransferase; HET: SAM; 2.49A {Aquifex aeolicus} PDB: 2e58_A* | Back alignment and structure |
|---|
Probab=94.96 E-value=0.011 Score=58.11 Aligned_cols=72 Identities=24% Similarity=0.436 Sum_probs=51.4
Q ss_pred ceeEecccccccCCCCCCCCccEEEEeeccC---ChhhH----HHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCCc
Q 015966 278 FSMCGGDFVEVYSDPSQVGAWDAVVTCFFID---TAHNI----VEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEM 350 (397)
Q Consensus 278 ls~~~GDF~ely~~~~~~~~fD~VvT~FFID---ta~Ni----~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~ 350 (397)
+.+..||..+.... -...++|+| |+| .+.|. .++|+.|+++|+|||+++. |.
T Consensus 168 L~l~~GDa~~~l~~-l~~~~~Da~----flDgFsP~kNPeLWs~e~f~~l~~~~~pgg~laT-----Yt----------- 226 (308)
T 3vyw_A 168 LKVLLGDARKRIKE-VENFKADAV----FHDAFSPYKNPELWTLDFLSLIKERIDEKGYWVS-----YS----------- 226 (308)
T ss_dssp EEEEESCHHHHGGG-CCSCCEEEE----EECCSCTTTSGGGGSHHHHHHHHTTEEEEEEEEE-----SC-----------
T ss_pred EEEEechHHHHHhh-hcccceeEE----EeCCCCcccCcccCCHHHHHHHHHHhCCCcEEEE-----Ee-----------
Confidence 67889998775431 123468877 444 33333 4799999999999999995 21
Q ss_pred cccCCHHHHHHHHHhCCCEEEEEe
Q 015966 351 SIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 351 ~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
+.-.+++.|+++||++.+..
T Consensus 227 ----aag~VRR~L~~aGF~V~k~~ 246 (308)
T 3vyw_A 227 ----SSLSVRKSLLTLGFKVGSSR 246 (308)
T ss_dssp ----CCHHHHHHHHHTTCEEEEEE
T ss_pred ----CcHHHHHHHHHCCCEEEecC
Confidence 23468889999999998854
|
| >1g55_A DNA cytosine methyltransferase DNMT2; human DNA methyltransferase homologue; HET: DNA SAH; 1.80A {Homo sapiens} SCOP: c.66.1.26 | Back alignment and structure |
|---|
Probab=94.95 E-value=0.17 Score=49.60 Aligned_cols=39 Identities=10% Similarity=0.004 Sum_probs=34.1
Q ss_pred CCeEEEecCCCChhHHHHHHcC--Ce-EEEEeCCHHHHHHHH
Q 015966 190 PPACLVPGAGLGRLALEISHLG--FI-SQGNEFSYYMMICSS 228 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~G--f~-V~GnD~S~~ML~~s~ 228 (397)
+.+|||+-||.|.+...+.++| ++ |.++|++..++.+.+
T Consensus 2 ~~~v~dLFaG~Gg~~~g~~~~G~~~~~v~~~E~d~~a~~~~~ 43 (343)
T 1g55_A 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYK 43 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHH
T ss_pred CCeEEEeCcCccHHHHHHHHCCCCceEEEEEeCCHHHHHHHH
Confidence 4589999999999999999999 44 789999999887655
|
| >2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=94.89 E-value=0.012 Score=58.15 Aligned_cols=41 Identities=22% Similarity=0.154 Sum_probs=34.7
Q ss_pred CCCCeEEEecCCC-ChhHHHHHH-cCC-eEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGAGL-GRLALEISH-LGF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGCGl-GRLa~eLA~-~Gf-~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.|||. |.++..+|+ +|. .|.++|.|...+..++
T Consensus 184 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~ 227 (398)
T 2dph_A 184 KPGSHVYIAGAGPVGRCAAAGARLLGAACVIVGDQNPERLKLLS 227 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence 3678999999986 999999988 499 8999999998876543
|
| >1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=94.85 E-value=0.032 Score=54.36 Aligned_cols=41 Identities=20% Similarity=0.139 Sum_probs=34.2
Q ss_pred CCCCeEEEecCCC-ChhHHHHHH-cCC-eEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGAGL-GRLALEISH-LGF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGCGl-GRLa~eLA~-~Gf-~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.|+|. |.++..+|+ +|. .|.++|.|..-+..++
T Consensus 189 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~~Vi~~~~~~~~~~~a~ 232 (371)
T 1f8f_A 189 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAK 232 (371)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH
Confidence 3678999999986 899999988 498 6999999998876554
|
| >3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* | Back alignment and structure |
|---|
Probab=94.74 E-value=0.019 Score=55.13 Aligned_cols=41 Identities=12% Similarity=0.196 Sum_probs=34.7
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHc-CCeEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGAGL-GRLALEISHL-GFISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGCGl-GRLa~eLA~~-Gf~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.|+|. |.++..+|+. |+.|.+++.|..-+..++
T Consensus 165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~ 207 (340)
T 3s2e_A 165 RPGQWVVISGIGGLGHVAVQYARAMGLRVAAVDIDDAKLNLAR 207 (340)
T ss_dssp CTTSEEEEECCSTTHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 3678999999985 9999999885 999999999998876544
|
| >3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A | Back alignment and structure |
|---|
Probab=94.66 E-value=0.034 Score=53.74 Aligned_cols=41 Identities=12% Similarity=-0.056 Sum_probs=33.8
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGCGl-GRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.|+|. |.++..+|+. |+ .|.++|.+..-+..++
T Consensus 165 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~ 208 (352)
T 3fpc_A 165 KLGDTVCVIGIGPVGLMSVAGANHLGAGRIFAVGSRKHCCDIAL 208 (352)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHTTTCSSEEEECCCHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence 3678999999986 8899999886 98 7999999988765544
|
| >4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* | Back alignment and structure |
|---|
Probab=94.65 E-value=0.038 Score=54.12 Aligned_cols=40 Identities=15% Similarity=0.177 Sum_probs=33.5
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (397)
++.+||+.|+|. |.++..+|+. |+ .|.+++.|..-+..++
T Consensus 182 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~ 224 (370)
T 4ej6_A 182 AGSTVAILGGGVIGLLTVQLARLAGATTVILSTRQATKRRLAE 224 (370)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 678999999976 8889999885 99 8999999988776544
|
| >3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} | Back alignment and structure |
|---|
Probab=94.63 E-value=0.037 Score=53.60 Aligned_cols=40 Identities=15% Similarity=0.110 Sum_probs=33.7
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CCe-EEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAGL-GRLALEISHL-GFI-SQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~-Gf~-V~GnD~S~~ML~~s~ 228 (397)
++.+||+.|+|. |.++..||+. |.. |.+.+.|..-+..++
T Consensus 179 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~ 221 (363)
T 3m6i_A 179 LGDPVLICGAGPIGLITMLCAKAAGACPLVITDIDEGRLKFAK 221 (363)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEEESCHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 678999999876 8899999885 997 999999998776554
|
| >3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus} | Back alignment and structure |
|---|
Probab=94.48 E-value=0.093 Score=51.64 Aligned_cols=136 Identities=13% Similarity=0.060 Sum_probs=75.8
Q ss_pred chhhHHHHHHHHHHhcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CC-eEEEEeCC
Q 015966 143 ADVDKVRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GF-ISQGNEFS 220 (397)
Q Consensus 143 ~d~dkv~stL~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf-~V~GnD~S 220 (397)
.|...++..|+.=.-+ +..=|...--.+++.+++ +-- +++.+|||+||++|..+...|.+ |. .|.|+|+-
T Consensus 56 vdr~~ar~~l~~g~~~----~g~y~SR~~~KL~ei~~~-~~l---~~~~~VlDLGaapGGwsq~~~~~~gv~~V~avdvG 127 (321)
T 3lkz_A 56 VDRSAAKHARKEGNVT----GGHPVSRGTAKLRWLVER-RFL---EPVGKVIDLGCGRGGWCYYMATQKRVQEVRGYTKG 127 (321)
T ss_dssp ECCHHHHHHHHHTCCS----SCCCSSTHHHHHHHHHHT-TSC---CCCEEEEEETCTTCHHHHHHTTCTTEEEEEEECCC
T ss_pred echHHHHHHHhcCcCc----CCCccchHHHHHHHHHHh-cCC---CCCCEEEEeCCCCCcHHHHHHhhcCCCEEEEEEcC
Confidence 5566677776643222 011111111235555555 322 35679999999999999866655 65 48999987
Q ss_pred HHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEec-ccccccCCCCCCCCcc
Q 015966 221 YYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGG-DFVEVYSDPSQVGAWD 299 (397)
Q Consensus 221 ~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~G-DF~ely~~~~~~~~fD 299 (397)
..= + . .|-.. .|+ . -..+.+..+ |+..+. ...+|
T Consensus 128 ~~~---------h-e-------~P~~~---------~ql--------~------w~lV~~~~~~Dv~~l~-----~~~~D 162 (321)
T 3lkz_A 128 GPG---------H-E-------EPQLV---------QSY--------G------WNIVTMKSGVDVFYRP-----SECCD 162 (321)
T ss_dssp STT---------S-C-------CCCCC---------CBT--------T------GGGEEEECSCCTTSSC-----CCCCS
T ss_pred CCC---------c-c-------Ccchh---------hhc--------C------CcceEEEeccCHhhCC-----CCCCC
Confidence 621 0 0 01000 000 0 012667777 765542 15689
Q ss_pred EEEEee-------ccCChhhHHHHHHHHHHhccCC-cEEEE
Q 015966 300 AVVTCF-------FIDTAHNIVEYIEIISRILKDG-GVWIN 332 (397)
Q Consensus 300 ~VvT~F-------FIDta~Ni~~yi~~I~~~LKPG-G~wIN 332 (397)
.|++=- .+|-+. -+..|+-+.+.|++| |-|+-
T Consensus 163 ~ivcDigeSs~~~~ve~~R-tl~vLel~~~wL~~~~~~f~~ 202 (321)
T 3lkz_A 163 TLLCDIGESSSSAEVEEHR-TIRVLEMVEDWLHRGPREFCV 202 (321)
T ss_dssp EEEECCCCCCSCHHHHHHH-HHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEECccCCCChhhhhhH-HHHHHHHHHHHhccCCCcEEE
Confidence 887632 223222 234777778999998 88874
|
| >3ubt_Y Modification methylase HAEIII; protein-DNA complex, DNA cytosine-5 methyltransferase, DNA B S-adenosyl methionine binding; HET: ATP 2PE; 2.50A {Haemophilus aegyptius} PDB: 1dct_A* | Back alignment and structure |
|---|
Probab=94.44 E-value=0.46 Score=45.25 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=32.3
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEE-EEeCCHHHHHHHH
Q 015966 191 PACLVPGAGLGRLALEISHLGFISQ-GNEFSYYMMICSS 228 (397)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~Gf~V~-GnD~S~~ML~~s~ 228 (397)
.+||++=||.|.+..-|-+.||++. ++|+......+.+
T Consensus 1 mkvidLFsG~GG~~~G~~~aG~~~v~a~e~d~~a~~ty~ 39 (331)
T 3ubt_Y 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYE 39 (331)
T ss_dssp CEEEEESCTTCHHHHHHHHTTCEEEEEEECCTTTHHHHH
T ss_pred CeEEEeCcCccHHHHHHHHCCCEEEEEEeCCHHHHHHHH
Confidence 4799999999999999999999864 9999998876544
|
| >3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=94.41 E-value=0.095 Score=51.81 Aligned_cols=41 Identities=20% Similarity=0.065 Sum_probs=33.9
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGCGl-GRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.|+|. |.++..||+. |+ .|.++|.|..-+..++
T Consensus 212 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~ 255 (404)
T 3ip1_A 212 RPGDNVVILGGGPIGLAAVAILKHAGASKVILSEPSEVRRNLAK 255 (404)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 4788999999865 8888999875 99 8999999998776554
|
| >3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=94.31 E-value=0.095 Score=50.47 Aligned_cols=40 Identities=15% Similarity=-0.030 Sum_probs=33.2
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHc-CCeEEEEeCCHHHHHHH
Q 015966 188 ESPPACLVPGAGL-GRLALEISHL-GFISQGNEFSYYMMICS 227 (397)
Q Consensus 188 ~~~~rVLvPGCGl-GRLa~eLA~~-Gf~V~GnD~S~~ML~~s 227 (397)
+++.+||+.|+|. |.++..+|+. |..|.+++.|..-+..+
T Consensus 175 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~ 216 (348)
T 3two_A 175 TKGTKVGVAGFGGLGSMAVKYAVAMGAEVSVFARNEHKKQDA 216 (348)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHTTCEEEEECSSSTTHHHH
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHH
Confidence 3678999999985 8899999875 99999999988776543
|
| >1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A | Back alignment and structure |
|---|
Probab=94.25 E-value=0.096 Score=50.71 Aligned_cols=40 Identities=23% Similarity=0.219 Sum_probs=33.2
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-cCC-eEEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAGL-GRLALEISH-LGF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~-~Gf-~V~GnD~S~~ML~~s~ 228 (397)
++.+||+.|+|. |.++..||+ +|. .|.++|.|..-+..++
T Consensus 171 ~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~ 213 (356)
T 1pl8_A 171 LGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK 213 (356)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 678999999985 899999988 599 8999999987665443
|
| >1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A* | Back alignment and structure |
|---|
Probab=94.18 E-value=0.12 Score=49.22 Aligned_cols=40 Identities=20% Similarity=0.160 Sum_probs=33.1
Q ss_pred CCCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHHHHH
Q 015966 188 ESPPACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMMICS 227 (397)
Q Consensus 188 ~~~~rVLvPGC--GlGRLa~eLA~-~Gf~V~GnD~S~~ML~~s 227 (397)
+++.+||+.|+ |.|+.+..+++ +|+.|.+++.+...+..+
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~~~~~G~~V~~~~~~~~~~~~~ 186 (333)
T 1v3u_A 144 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAYL 186 (333)
T ss_dssp CSSCEEEEESTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred CCCCEEEEecCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 36789999998 89999887766 699999999998876543
|
| >4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A* | Back alignment and structure |
|---|
Probab=94.09 E-value=0.04 Score=52.67 Aligned_cols=40 Identities=18% Similarity=0.136 Sum_probs=33.2
Q ss_pred CCCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHHHHH
Q 015966 188 ESPPACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMMICS 227 (397)
Q Consensus 188 ~~~~rVLvPGC--GlGRLa~eLA~-~Gf~V~GnD~S~~ML~~s 227 (397)
+++.+||+.|+ |.|.++..+|+ +|++|.+.+.|..-+..+
T Consensus 148 ~~g~~vlI~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~ 190 (336)
T 4b7c_A 148 KNGETVVISGAAGAVGSVAGQIARLKGCRVVGIAGGAEKCRFL 190 (336)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 36789999998 78999998876 599999999998766433
|
| >2zig_A TTHA0409, putative modification methylase; methyltransferase, S- adenosylmethionine, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} PDB: 2zie_A* 2zif_A | Back alignment and structure |
|---|
Probab=93.97 E-value=0.078 Score=50.53 Aligned_cols=91 Identities=18% Similarity=0.227 Sum_probs=55.2
Q ss_pred cceeEecccccccCCCCCCCCccEEEEe--eccCC------------------hhhHHHHHHHHHHhccCCcEEE-EecC
Q 015966 277 GFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDT------------------AHNIVEYIEIISRILKDGGVWI-NLGP 335 (397)
Q Consensus 277 ~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFIDt------------------a~Ni~~yi~~I~~~LKPGG~wI-N~GP 335 (397)
...+++||.+++... -.+++||+|||. |+... ...+.+.++.++++|||||.++ ++|.
T Consensus 21 ~~~i~~gD~~~~l~~-l~~~s~DlIvtdPPY~~~~~y~~~~~~~~~~~~~~~~l~~l~~~~~~~~rvLk~~G~l~i~~~d 99 (297)
T 2zig_A 21 VHRLHVGDAREVLAS-FPEASVHLVVTSPPYWTLKRYEDTPGQLGHIEDYEAFLDELDRVWREVFRLLVPGGRLVIVVGD 99 (297)
T ss_dssp CEEEEESCHHHHHTT-SCTTCEEEEEECCCCCCCC-------CCHHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECC
T ss_pred CCEEEECcHHHHHhh-CCCCceeEEEECCCCCCccccCCChhhhcccccHHHHHHHHHHHHHHHHHHcCCCcEEEEEECC
Confidence 367899999885321 125789999997 54221 0113356778999999999764 5554
Q ss_pred CcchhhhccCCCCCccccCC-HHHHHHHHHhCCCEEEEE
Q 015966 336 LLYHFADLYGQEDEMSIELS-LEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 336 LlYh~~d~~g~~~~~~ieLS-~EEl~~ll~~~GFeii~e 373 (397)
....... .+ ....++ .+++..++++.||.+..+
T Consensus 100 ~~~~~~~-~g----~~~~~~~~~~l~~~~~~~Gf~~~~~ 133 (297)
T 2zig_A 100 VAVARRR-FG----RHLVFPLHADIQVRCRKLGFDNLNP 133 (297)
T ss_dssp EEEECC---------EEEECHHHHHHHHHHHTTCEEEEE
T ss_pred Ccccccc-CC----cccccccHHHHHHHHHHcCCeeecc
Confidence 3211000 00 001122 367888999999988764
|
| >3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis} | Back alignment and structure |
|---|
Probab=93.91 E-value=0.031 Score=53.77 Aligned_cols=41 Identities=20% Similarity=0.137 Sum_probs=33.6
Q ss_pred CCCCeEEEecCC--CChhHHHHHH-cCCeEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGAG--LGRLALEISH-LGFISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGCG--lGRLa~eLA~-~Gf~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.|+| .|.++..+|+ +|..|.+.+.|..-+..++
T Consensus 143 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~ 186 (340)
T 3gms_A 143 QRNDVLLVNACGSAIGHLFAQLSQILNFRLIAVTRNNKHTEELL 186 (340)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 467899999986 8999999987 5999999999887665443
|
| >1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.90 E-value=0.083 Score=51.74 Aligned_cols=41 Identities=17% Similarity=0.143 Sum_probs=33.7
Q ss_pred CCCCeEEEecCCC-ChhHHHHHH-cCCeEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGAGL-GRLALEISH-LGFISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGCGl-GRLa~eLA~-~Gf~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.|+|. |.++..||+ +|..|.+++.|..-+..++
T Consensus 193 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~Vi~~~~~~~~~~~a~ 235 (369)
T 1uuf_A 193 GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAAK 235 (369)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 3678999999984 889999987 5999999999987765443
|
| >3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A* | Back alignment and structure |
|---|
Probab=93.87 E-value=0.032 Score=53.46 Aligned_cols=41 Identities=12% Similarity=0.096 Sum_probs=33.6
Q ss_pred CCCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.|+ |.|.++..+|+. |..|.+++.+..-+..++
T Consensus 147 ~~g~~vlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~ 190 (334)
T 3qwb_A 147 KKGDYVLLFAAAGGVGLILNQLLKMKGAHTIAVASTDEKLKIAK 190 (334)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 36789999994 789999888874 999999999987765443
|
| >3me5_A Cytosine-specific methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.75A {Shigella flexneri 2A} PDB: 3lx6_A | Back alignment and structure |
|---|
Probab=93.84 E-value=1.2 Score=46.03 Aligned_cols=54 Identities=15% Similarity=0.157 Sum_probs=42.2
Q ss_pred HHHHHhhCCCCCC---CCCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHH
Q 015966 175 LEELDALFPNRSK---ESPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSS 228 (397)
Q Consensus 175 l~~L~~~~p~~~~---~~~~rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~ 228 (397)
++.|...+|.... +...+||++=||.|.+..-|.+.||+ |.++|+......+.+
T Consensus 70 ~~~l~~~~~~~p~~~~~~~~~viDLFaG~GGlslG~~~aG~~~v~avE~d~~A~~ty~ 127 (482)
T 3me5_A 70 FAHLQTLLPKPPEHHPHYAFRFIDLFAGIGGIRRGFESIGGQCVFTSEWNKHAVRTYK 127 (482)
T ss_dssp HHHHHTTSCCCCTTTTCCSEEEEEESCTTSHHHHHHHTTTEEEEEEECCCHHHHHHHH
T ss_pred HHHHHhhCCCCCccCCCccceEEEecCCccHHHHHHHHCCCEEEEEEeCCHHHHHHHH
Confidence 4667777765322 24689999999999999999999998 679999998765543
|
| >3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=93.70 E-value=0.089 Score=51.36 Aligned_cols=41 Identities=17% Similarity=0.121 Sum_probs=34.1
Q ss_pred CCCCeEEEecCC-CChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGAG-LGRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGCG-lGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.|+| .|.++..+|+. |+ .|.++|.|..-+..++
T Consensus 192 ~~g~~VlV~GaG~vG~~a~q~a~~~Ga~~Vi~~~~~~~~~~~a~ 235 (378)
T 3uko_A 192 EPGSNVAIFGLGTVGLAVAEGAKTAGASRIIGIDIDSKKYETAK 235 (378)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHHHTCSCEEEECSCTTHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 367899999997 58999999876 98 7999999988776544
|
| >1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.58 E-value=0.073 Score=51.39 Aligned_cols=40 Identities=20% Similarity=0.146 Sum_probs=33.3
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-cCCeEEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAGL-GRLALEISH-LGFISQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~-~Gf~V~GnD~S~~ML~~s~ 228 (397)
++.+||+.|+|. |.++..+|+ +|+.|.+++.|..-+..++
T Consensus 168 ~g~~VlV~GaG~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~ 209 (352)
T 1e3j_A 168 LGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK 209 (352)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 678999999885 888889887 5999999999988775443
|
| >2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=93.55 E-value=0.071 Score=51.26 Aligned_cols=41 Identities=20% Similarity=0.131 Sum_probs=34.1
Q ss_pred CCCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGC--GlGRLa~eLA~-~Gf~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.|+ |+|.++..+|+ +|+.|.+.+.|..-+..++
T Consensus 165 ~~g~~vlV~Gasg~iG~~~~~~a~~~G~~Vi~~~~~~~~~~~~~ 208 (343)
T 2eih_A 165 RPGDDVLVMAAGSGVSVAAIQIAKLFGARVIATAGSEDKLRRAK 208 (343)
T ss_dssp CTTCEEEECSTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 36789999998 79999888877 5999999999987765443
|
| >3p8z_A Mtase, non-structural protein 5; methyltransferase, RNA, ER, transferase-transferase inhibito; HET: 36A SAH; 1.70A {Dengue virus 3} SCOP: c.66.1.25 PDB: 3p97_A* 2xbm_A* 3evg_A* | Back alignment and structure |
|---|
Probab=93.43 E-value=0.33 Score=46.54 Aligned_cols=97 Identities=12% Similarity=0.098 Sum_probs=60.7
Q ss_pred CCCCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 188 ESPPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 188 ~~~~rVLvPGCGlGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
+++.+|||+||+.|..+...|.+ |. .|.|+|+-..= + +. |
T Consensus 77 ~~g~~VvDLGaapGGWSq~~a~~~g~~~V~avdvG~~g---------h--------e~---------------------P 118 (267)
T 3p8z_A 77 IPEGRVIDLGCGRGGWSYYCAGLKKVTEVRGYTKGGPG---------H--------EE---------------------P 118 (267)
T ss_dssp CCCEEEEEESCTTSHHHHHHHTSTTEEEEEEECCCSTT---------S--------CC---------------------C
T ss_pred CCCCEEEEcCCCCCcHHHHHHHhcCCCEEEEEecCCCC---------c--------cC---------------------c
Confidence 36779999999999999866655 54 48888886511 0 01 1
Q ss_pred CCCCCCCCCC-CcceeEec-ccccccCCCCCCCCccEEEEee-------ccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 266 DIHPASAGIT-EGFSMCGG-DFVEVYSDPSQVGAWDAVVTCF-------FIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 266 Dv~p~~~~~~-~~ls~~~G-DF~ely~~~~~~~~fD~VvT~F-------FIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
.... .++ +.+.|..| |+..+. ...+|.|+|=. .+|-+. -++.|+-+.+.|++ |-|+-
T Consensus 119 ~~~~---s~gwn~v~fk~gvDv~~~~-----~~~~DtllcDIgeSs~~~~vE~~R-tlrvLela~~wL~~-~~fc~ 184 (267)
T 3p8z_A 119 VPMS---TYGWNIVKLMSGKDVFYLP-----PEKCDTLLCDIGESSPSPTVEESR-TIRVLKMVEPWLKN-NQFCI 184 (267)
T ss_dssp CCCC---CTTTTSEEEECSCCGGGCC-----CCCCSEEEECCCCCCSCHHHHHHH-HHHHHHHHGGGCSS-CEEEE
T ss_pred chhh---hcCcCceEEEeccceeecC-----CccccEEEEecCCCCCChhhhhhH-HHHHHHHHHHhccc-CCEEE
Confidence 1100 011 23888999 875442 26699998743 233222 23477777899999 66663
|
| >2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A* | Back alignment and structure |
|---|
Probab=93.42 E-value=0.098 Score=50.05 Aligned_cols=39 Identities=18% Similarity=0.198 Sum_probs=33.0
Q ss_pred CCCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHHHH
Q 015966 188 ESPPACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMMIC 226 (397)
Q Consensus 188 ~~~~rVLvPGC--GlGRLa~eLA~-~Gf~V~GnD~S~~ML~~ 226 (397)
+++.+||+.|+ |.|.++..+|+ +|+.|.+.+.|..-+..
T Consensus 154 ~~g~~vlI~Ga~g~iG~~~~~~a~~~G~~V~~~~~~~~~~~~ 195 (345)
T 2j3h_A 154 KEGETVYVSAASGAVGQLVGQLAKMMGCYVVGSAGSKEKVDL 195 (345)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 36789999997 79999888887 59999999999877653
|
| >3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} | Back alignment and structure |
|---|
Probab=93.34 E-value=0.06 Score=52.37 Aligned_cols=41 Identities=17% Similarity=0.073 Sum_probs=33.7
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHc-CCeEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGAGL-GRLALEISHL-GFISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGCGl-GRLa~eLA~~-Gf~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.|+|. |.++..+|+. |+.|.+++.|..-+..++
T Consensus 188 ~~g~~VlV~G~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~ 230 (363)
T 3uog_A 188 RAGDRVVVQGTGGVALFGLQIAKATGAEVIVTSSSREKLDRAF 230 (363)
T ss_dssp CTTCEEEEESSBHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCchhHHHHH
Confidence 4678999999885 8888888875 999999999987765443
|
| >1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=93.21 E-value=0.044 Score=53.86 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=34.1
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGCGl-GRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.|+|. |.++..||+. |. .|.++|.|..-+..++
T Consensus 184 ~~g~~VlV~GaG~vG~~aiqlAk~~Ga~~Vi~~~~~~~~~~~a~ 227 (398)
T 1kol_A 184 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAK 227 (398)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCeEEEEcCCHHHHHHHH
Confidence 3678999999976 9999999984 98 6999999998776554
|
| >3qv2_A 5-cytosine DNA methyltransferase; DNMT2, ehmeth; HET: SAH; 2.15A {Entamoeba histolytica} | Back alignment and structure |
|---|
Probab=93.20 E-value=0.37 Score=47.20 Aligned_cols=40 Identities=10% Similarity=-0.049 Sum_probs=34.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC--eE--EEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF--IS--QGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf--~V--~GnD~S~~ML~~s~ 228 (397)
.+.+||++-||.|.+..-+.+.|+ ++ .++|+......+.+
T Consensus 9 ~~~~vidLFaG~GG~~~G~~~aG~~~~~v~~a~e~d~~a~~ty~ 52 (327)
T 3qv2_A 9 KQVNVIEFFSGIGGLRSSYERSSININATFIPFDINEIANKIYS 52 (327)
T ss_dssp CCEEEEEETCTTTHHHHHHHHSSCCCCEEEEEECCCHHHHHHHH
T ss_pred CCCEEEEECCChhHHHHHHHHcCCCceEEEEEEECCHHHHHHHH
Confidence 567999999999999999999996 54 59999998876544
|
| >3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A* | Back alignment and structure |
|---|
Probab=93.18 E-value=0.043 Score=52.43 Aligned_cols=41 Identities=20% Similarity=0.130 Sum_probs=33.7
Q ss_pred CCCCeEEEec--CCCChhHHHHHHc-CCeEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPG--AGLGRLALEISHL-GFISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPG--CGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.| .|.|.++..+|+. |++|.+.+.|..-+..++
T Consensus 139 ~~g~~VlV~Ga~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~ 182 (325)
T 3jyn_A 139 KPGEIILFHAAAGGVGSLACQWAKALGAKLIGTVSSPEKAAHAK 182 (325)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 3678999998 4789999998874 999999999987765443
|
| >4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus} | Back alignment and structure |
|---|
Probab=93.13 E-value=0.098 Score=50.43 Aligned_cols=41 Identities=22% Similarity=0.161 Sum_probs=33.7
Q ss_pred CCCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.|+ |.|.++..+|+. |+.|.+++-+..-+..++
T Consensus 158 ~~g~~VlV~Gasg~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~ 201 (342)
T 4eye_A 158 RAGETVLVLGAAGGIGTAAIQIAKGMGAKVIAVVNRTAATEFVK 201 (342)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSGGGHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 46789999997 789999999875 999999999887665443
|
| >3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis} | Back alignment and structure |
|---|
Probab=93.12 E-value=0.22 Score=47.11 Aligned_cols=39 Identities=13% Similarity=0.201 Sum_probs=32.2
Q ss_pred CCCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHHHH
Q 015966 188 ESPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMICS 227 (397)
Q Consensus 188 ~~~~rVLvPGCG-lGRLa~eLA~~-Gf~V~GnD~S~~ML~~s 227 (397)
+++.+||+.|+| .|.++..||+. |++|.+++ |..-+..+
T Consensus 141 ~~g~~VlV~GaG~vG~~a~qlak~~Ga~Vi~~~-~~~~~~~~ 181 (315)
T 3goh_A 141 TKQREVLIVGFGAVNNLLTQMLNNAGYVVDLVS-ASLSQALA 181 (315)
T ss_dssp CSCCEEEEECCSHHHHHHHHHHHHHTCEEEEEC-SSCCHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEE-ChhhHHHH
Confidence 478899999997 59999999875 99999999 87665443
|
| >1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* | Back alignment and structure |
|---|
Probab=93.04 E-value=0.3 Score=47.41 Aligned_cols=41 Identities=20% Similarity=0.046 Sum_probs=33.2
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGCGl-GRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.|+|. |.++..||+. |. .|.++|.|..-+..++
T Consensus 190 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~ 233 (373)
T 1p0f_A 190 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI 233 (373)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH
Confidence 3678999999874 8889999875 98 7999999987765443
|
| >1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.82 E-value=0.31 Score=47.34 Aligned_cols=41 Identities=22% Similarity=0.173 Sum_probs=33.1
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGCGl-GRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.|+|. |.++..+|+. |. .|.+++.|..-+..++
T Consensus 191 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~ 234 (374)
T 1cdo_A 191 EPGSTCAVFGLGAVGLAAVMGCHSAGAKRIIAVDLNPDKFEKAK 234 (374)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence 3678999999874 8888898874 98 7999999987765443
|
| >2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.76 E-value=0.065 Score=51.66 Aligned_cols=40 Identities=23% Similarity=0.219 Sum_probs=33.1
Q ss_pred CCCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHHHHH
Q 015966 188 ESPPACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMMICS 227 (397)
Q Consensus 188 ~~~~rVLvPGC--GlGRLa~eLA~-~Gf~V~GnD~S~~ML~~s 227 (397)
+++.+||+.|+ |.|+.+..+|+ +|+.|.+.+.|...+..+
T Consensus 168 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~V~~~~~~~~~~~~~ 210 (347)
T 2hcy_A 168 MAGHWVAISGAAGGLGSLAVQYAKAMGYRVLGIDGGEGKEELF 210 (347)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEECSTTHHHHH
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCcEEEEcCCHHHHHHH
Confidence 36789999998 78999888877 699999999988776443
|
| >1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A | Back alignment and structure |
|---|
Probab=92.65 E-value=0.089 Score=50.58 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=32.2
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCCeEEEEeCCHHHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISH-LGFISQGNEFSYYMMICS 227 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~-~Gf~V~GnD~S~~ML~~s 227 (397)
++.+||+.|+| .|.++..+|+ +|+.|.+.+.|..-+..+
T Consensus 164 ~g~~VlV~GaG~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~ 204 (339)
T 1rjw_A 164 PGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELA 204 (339)
T ss_dssp TTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 67799999986 6888888876 599999999998776544
|
| >2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* | Back alignment and structure |
|---|
Probab=92.64 E-value=0.21 Score=48.45 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=33.2
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGCGl-GRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.|+|. |.++..+|+. |. .|.+++.|..-+..++
T Consensus 189 ~~g~~VlV~GaG~vG~~avqla~~~Ga~~Vi~~~~~~~~~~~~~ 232 (373)
T 2fzw_A 189 EPGSVCAVFGLGGVGLAVIMGCKVAGASRIIGVDINKDKFARAK 232 (373)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 3678999999875 8888898875 98 7999999987765443
|
| >3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A* | Back alignment and structure |
|---|
Probab=92.64 E-value=0.15 Score=48.41 Aligned_cols=37 Identities=22% Similarity=0.225 Sum_probs=30.9
Q ss_pred eEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHHHHH
Q 015966 192 ACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMICSS 228 (397)
Q Consensus 192 rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~ 228 (397)
+||+.|+ |+|.++..+|+. |.+|.+++-|..-+..++
T Consensus 149 ~VlV~Ga~G~vG~~aiqla~~~Ga~Vi~~~~~~~~~~~~~ 188 (324)
T 3nx4_A 149 EVVVTGASGGVGSTAVALLHKLGYQVAAVSGRESTHGYLK 188 (324)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHH
T ss_pred eEEEECCCcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 4999997 789999999875 999999999887665443
|
| >2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* | Back alignment and structure |
|---|
Probab=92.58 E-value=0.073 Score=51.31 Aligned_cols=40 Identities=28% Similarity=0.306 Sum_probs=32.3
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCC-eEEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISH-LGF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~-~Gf-~V~GnD~S~~ML~~s~ 228 (397)
++.+||+.|+| .|.++..+|+ +|+ .|.+.+.|..-+..++
T Consensus 167 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~~~~~ 209 (348)
T 2d8a_A 167 SGKSVLITGAGPLGLLGIAVAKASGAYPVIVSEPSDFRRELAK 209 (348)
T ss_dssp TTCCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHH
Confidence 56799999987 4888888887 599 9999999987665443
|
| >2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... | Back alignment and structure |
|---|
Probab=92.53 E-value=0.4 Score=46.55 Aligned_cols=41 Identities=17% Similarity=0.127 Sum_probs=33.0
Q ss_pred CCCCeEEEecCCC-ChhHHHHHH-cCC-eEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGAGL-GRLALEISH-LGF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGCGl-GRLa~eLA~-~Gf-~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.|+|. |.++..+|+ +|. .|.+++.|..-+..++
T Consensus 190 ~~g~~VlV~GaG~vG~~a~qla~~~Ga~~Vi~~~~~~~~~~~~~ 233 (374)
T 2jhf_A 190 TQGSTCAVFGLGGVGLSVIMGCKAAGAARIIGVDINKDKFAKAK 233 (374)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 3678999999875 888888887 498 7999999987765443
|
| >1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.51 E-value=0.13 Score=49.99 Aligned_cols=40 Identities=25% Similarity=0.243 Sum_probs=32.7
Q ss_pred CCCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHHHHH
Q 015966 188 ESPPACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMMICS 227 (397)
Q Consensus 188 ~~~~rVLvPGC--GlGRLa~eLA~-~Gf~V~GnD~S~~ML~~s 227 (397)
+++.+||+.|+ |.|..+..+|+ +|+.|.+.+.|..-+..+
T Consensus 169 ~~g~~vlV~GasggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~ 211 (351)
T 1yb5_A 169 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIV 211 (351)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred CCcCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCChhHHHHH
Confidence 36789999997 78999888876 599999999998766533
|
| >1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP} | Back alignment and structure |
|---|
Probab=92.39 E-value=0.11 Score=49.63 Aligned_cols=40 Identities=18% Similarity=0.210 Sum_probs=32.3
Q ss_pred CCCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHHHHH
Q 015966 188 ESPPACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMMICS 227 (397)
Q Consensus 188 ~~~~rVLvPGC--GlGRLa~eLA~-~Gf~V~GnD~S~~ML~~s 227 (397)
+++.+||+.|+ |.|..+..+++ +|+.|.+.+.+..-+..+
T Consensus 144 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~Vi~~~~~~~~~~~~ 186 (333)
T 1wly_A 144 KPGDYVLIHAAAGGMGHIMVPWARHLGATVIGTVSTEEKAETA 186 (333)
T ss_dssp CTTCEEEETTTTSTTHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 36789999995 88998887766 599999999998766543
|
| >2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=92.36 E-value=0.089 Score=50.60 Aligned_cols=40 Identities=18% Similarity=0.120 Sum_probs=32.4
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc---CCeEEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAGL-GRLALEISHL---GFISQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~---Gf~V~GnD~S~~ML~~s~ 228 (397)
++.+||+.|+|. |.++..+|+. |+.|.+++.|..-+..++
T Consensus 170 ~g~~VlV~GaG~vG~~aiqlak~~~~Ga~Vi~~~~~~~~~~~~~ 213 (344)
T 2h6e_A 170 AEPVVIVNGIGGLAVYTIQILKALMKNITIVGISRSKKHRDFAL 213 (344)
T ss_dssp SSCEEEEECCSHHHHHHHHHHHHHCTTCEEEEECSCHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHH
Confidence 467999999874 8888888874 999999999987765443
|
| >1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D | Back alignment and structure |
|---|
Probab=92.23 E-value=0.052 Score=51.18 Aligned_cols=39 Identities=18% Similarity=0.221 Sum_probs=32.2
Q ss_pred CCCCeEEEecC--CCChhHHHHHH-cCCeEEEEeCCHHHHHH
Q 015966 188 ESPPACLVPGA--GLGRLALEISH-LGFISQGNEFSYYMMIC 226 (397)
Q Consensus 188 ~~~~rVLvPGC--GlGRLa~eLA~-~Gf~V~GnD~S~~ML~~ 226 (397)
+++.+||+.|+ |.|.++..+|+ +|..|.+.+-+..-+..
T Consensus 124 ~~g~~vlV~Ga~G~vG~~~~~~a~~~Ga~Vi~~~~~~~~~~~ 165 (302)
T 1iz0_A 124 RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLAL 165 (302)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 36789999998 78999988886 59999999998766543
|
| >2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A* | Back alignment and structure |
|---|
Probab=92.05 E-value=0.12 Score=50.22 Aligned_cols=39 Identities=21% Similarity=0.150 Sum_probs=32.5
Q ss_pred CCCeEEEec--CCCChhHHHHHH-cCCeEEEEeCCHHHHHHH
Q 015966 189 SPPACLVPG--AGLGRLALEISH-LGFISQGNEFSYYMMICS 227 (397)
Q Consensus 189 ~~~rVLvPG--CGlGRLa~eLA~-~Gf~V~GnD~S~~ML~~s 227 (397)
++.+||+.| .|.|.++..+|+ +|+.|.+.+-+..-+..+
T Consensus 163 ~g~~VlV~Ga~G~iG~~~~q~a~~~Ga~Vi~~~~~~~~~~~~ 204 (362)
T 2c0c_A 163 EGKKVLVTAAAGGTGQFAMQLSKKAKCHVIGTCSSDEKSAFL 204 (362)
T ss_dssp TTCEEEETTTTBTTHHHHHHHHHHTTCEEEEEESSHHHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCEEEEEECCHHHHHHH
Confidence 678999999 578999999887 499999999998766543
|
| >1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* | Back alignment and structure |
|---|
Probab=92.03 E-value=0.43 Score=46.32 Aligned_cols=41 Identities=17% Similarity=0.140 Sum_probs=33.1
Q ss_pred CCCCeEEEecCC-CChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGAG-LGRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGCG-lGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.|+| .|.++..||+. |. .|.++|.|..-+..++
T Consensus 194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~a~ 237 (376)
T 1e3i_A 194 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK 237 (376)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHH
Confidence 367899999987 48889999875 98 7999999987765443
|
| >1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A | Back alignment and structure |
|---|
Probab=92.01 E-value=0.12 Score=50.20 Aligned_cols=41 Identities=17% Similarity=0.046 Sum_probs=32.8
Q ss_pred CCCCeEEEecCC-CChhHHHHHH-cCCeEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGAG-LGRLALEISH-LGFISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGCG-lGRLa~eLA~-~Gf~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.|+| .|.++..+|+ +|+.|.+++.|..-+..++
T Consensus 178 ~~g~~VlV~GaG~vG~~~~qlak~~Ga~Vi~~~~~~~~~~~~~ 220 (360)
T 1piw_A 178 GPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAM 220 (360)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHH
Confidence 367899999986 4888888887 5999999999887665443
|
| >1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=92.00 E-value=0.12 Score=49.14 Aligned_cols=40 Identities=18% Similarity=0.156 Sum_probs=32.6
Q ss_pred CCCCeEEEec--CCCChhHHHHHH-cCCeEEEEeCCHHHHHHH
Q 015966 188 ESPPACLVPG--AGLGRLALEISH-LGFISQGNEFSYYMMICS 227 (397)
Q Consensus 188 ~~~~rVLvPG--CGlGRLa~eLA~-~Gf~V~GnD~S~~ML~~s 227 (397)
+++.+||+.| .|.|..+..+|+ +|+.|.+.+.+..-+..+
T Consensus 139 ~~g~~vlV~Ga~ggiG~~~~~~a~~~G~~V~~~~~~~~~~~~~ 181 (327)
T 1qor_A 139 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSA 181 (327)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 3678999999 588998888776 599999999998776544
|
| >2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A* | Back alignment and structure |
|---|
Probab=91.86 E-value=0.17 Score=48.98 Aligned_cols=40 Identities=18% Similarity=0.229 Sum_probs=32.5
Q ss_pred CCCCeEEEec--CCCChhHHHHHH-cCCeEEEEeCCHHHHHHH
Q 015966 188 ESPPACLVPG--AGLGRLALEISH-LGFISQGNEFSYYMMICS 227 (397)
Q Consensus 188 ~~~~rVLvPG--CGlGRLa~eLA~-~Gf~V~GnD~S~~ML~~s 227 (397)
+++.+||+.| .|.|..+..+|+ +|+.|.+.+.|..-+..+
T Consensus 161 ~~g~~vlV~Ga~ggiG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~ 203 (354)
T 2j8z_A 161 QAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLVTAGSQKKLQMA 203 (354)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCCCEEEEECCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHH
Confidence 4678999998 478998887766 599999999998776544
|
| >4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=91.79 E-value=0.2 Score=48.52 Aligned_cols=41 Identities=17% Similarity=0.199 Sum_probs=33.3
Q ss_pred CCCCeEEEec--CCCChhHHHHHHc-CCeEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPG--AGLGRLALEISHL-GFISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPG--CGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.| .|.|.++..+|+. |+.|.+.+.|..-+..++
T Consensus 166 ~~g~~VlV~Gg~g~iG~~~~~~a~~~Ga~Vi~~~~~~~~~~~~~ 209 (353)
T 4dup_A 166 TEGESVLIHGGTSGIGTTAIQLARAFGAEVYATAGSTGKCEACE 209 (353)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 4778999995 4689999888875 999999999998775444
|
| >1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=91.53 E-value=0.071 Score=52.29 Aligned_cols=41 Identities=20% Similarity=0.104 Sum_probs=33.0
Q ss_pred CCCCeEEEecCC-CChhHHHHHHc-C-CeEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGAG-LGRLALEISHL-G-FISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGCG-lGRLa~eLA~~-G-f~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.|+| +|.++..||+. | ..|.+.+.|..-+..++
T Consensus 194 ~~g~~VlV~GaG~vG~~aiqlak~~Ga~~Vi~~~~~~~~~~~~~ 237 (380)
T 1vj0_A 194 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE 237 (380)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHcCCceEEEEcCCHHHHHHHH
Confidence 367899999976 58888888875 8 69999999987765443
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=91.39 E-value=0.4 Score=46.36 Aligned_cols=51 Identities=12% Similarity=-0.063 Sum_probs=42.7
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (397)
+++.|.+.+. .++..||||=||.|..+....++|-...|+|++..+..++.
T Consensus 241 l~~~~i~~~~----~~~~~VlDpF~GsGtt~~aa~~~gr~~ig~e~~~~~~~~~~ 291 (323)
T 1boo_A 241 LPEFFIRMLT----EPDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASA 291 (323)
T ss_dssp HHHHHHHHHC----CTTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHhC----CCCCEEEECCCCCCHHHHHHHHcCCCEEEEeCCHHHHHHHH
Confidence 5555555443 25779999999999999999999999999999999988776
|
| >3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A | Back alignment and structure |
|---|
Probab=91.30 E-value=0.23 Score=49.94 Aligned_cols=41 Identities=22% Similarity=0.093 Sum_probs=33.6
Q ss_pred CCCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.|+ |+|.++..+|+. |+.|.+++-|..=+..++
T Consensus 227 ~~g~~VlV~GasG~vG~~avqlak~~Ga~vi~~~~~~~~~~~~~ 270 (456)
T 3krt_A 227 KQGDNVLIWGASGGLGSYATQFALAGGANPICVVSSPQKAEICR 270 (456)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCeEEEEECCHHHHHHHH
Confidence 46789999997 689999999885 999999998887665443
|
| >2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* | Back alignment and structure |
|---|
Probab=91.25 E-value=0.061 Score=51.77 Aligned_cols=36 Identities=25% Similarity=0.327 Sum_probs=29.8
Q ss_pred CCCeEEEecCC-CChhHHHHHH-cCC-eEEEEeCCHHHH
Q 015966 189 SPPACLVPGAG-LGRLALEISH-LGF-ISQGNEFSYYMM 224 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~eLA~-~Gf-~V~GnD~S~~ML 224 (397)
++.+||+.|+| .|.++..+|+ +|. .|.+.+.|..-+
T Consensus 164 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~~Vi~~~~~~~~~ 202 (343)
T 2dq4_A 164 SGKSVLITGAGPIGLMAAMVVRASGAGPILVSDPNPYRL 202 (343)
T ss_dssp TTSCEEEECCSHHHHHHHHHHHHTTCCSEEEECSCHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHH
Confidence 56789999986 4888888887 599 899999998655
|
| >1i4w_A Mitochondrial replication protein MTF1; mitochondrial transcription factor, transcription initiation; 2.60A {Saccharomyces cerevisiae} SCOP: c.66.1.24 | Back alignment and structure |
|---|
Probab=91.15 E-value=0.4 Score=47.68 Aligned_cols=37 Identities=11% Similarity=-0.182 Sum_probs=32.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~ 225 (397)
++..||++|.|+|-|+..|+++ +-.|+++|+...++.
T Consensus 58 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~vvavE~D~~l~~ 96 (353)
T 1i4w_A 58 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYK 96 (353)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHH
T ss_pred CCCEEEEECCCCCHHHHHHHhhCCCCEEEEEecCHHHHH
Confidence 3578999999999999999987 568999999998764
|
| >4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A | Back alignment and structure |
|---|
Probab=91.12 E-value=0.3 Score=48.66 Aligned_cols=41 Identities=24% Similarity=0.182 Sum_probs=33.5
Q ss_pred CCCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.|+ |.|.++..+|+. |..|.+.+-|..-+..++
T Consensus 219 ~~g~~VlV~GasG~iG~~a~qla~~~Ga~vi~~~~~~~~~~~~~ 262 (447)
T 4a0s_A 219 KQGDIVLIWGASGGLGSYAIQFVKNGGGIPVAVVSSAQKEAAVR 262 (447)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 46789999997 689999998875 999999998887765443
|
| >4h0n_A DNMT2; SAH binding, transferase; HET: SAH; 2.71A {Spodoptera frugiperda} | Back alignment and structure |
|---|
Probab=90.91 E-value=1.1 Score=43.78 Aligned_cols=39 Identities=10% Similarity=0.044 Sum_probs=32.9
Q ss_pred CCeEEEecCCCChhHHHHHHcCC--e-EEEEeCCHHHHHHHH
Q 015966 190 PPACLVPGAGLGRLALEISHLGF--I-SQGNEFSYYMMICSS 228 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf--~-V~GnD~S~~ML~~s~ 228 (397)
+.+||++=||.|.+..-+.+.|+ + |.++|+......+.+
T Consensus 3 ~~~~idLFaG~GG~~~G~~~aG~~~~~v~a~e~d~~a~~ty~ 44 (333)
T 4h0n_A 3 SHKILELYSGIGGMHCAWKESGLDGEIVAAVDINTVANSVYK 44 (333)
T ss_dssp CEEEEEETCTTTHHHHHHHHHTCSEEEEEEECCCHHHHHHHH
T ss_pred CCEEEEECcCccHHHHHHHHcCCCceEEEEEeCCHHHHHHHH
Confidence 35899999999999999999997 4 679999998876544
|
| >3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* | Back alignment and structure |
|---|
Probab=90.84 E-value=0.13 Score=49.47 Aligned_cols=40 Identities=13% Similarity=0.149 Sum_probs=33.9
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc--CCeEEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAGL-GRLALEISHL--GFISQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~--Gf~V~GnD~S~~ML~~s~ 228 (397)
++.+||+.|+|. |.++..||+. |..|.++|.|..-+..++
T Consensus 171 ~g~~vlv~GaG~vG~~a~qla~~~g~~~Vi~~~~~~~~~~~~~ 213 (345)
T 3jv7_A 171 PGSTAVVIGVGGLGHVGIQILRAVSAARVIAVDLDDDRLALAR 213 (345)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHH
Confidence 678999999976 8999999975 789999999998776544
|
| >3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=90.81 E-value=1.1 Score=38.70 Aligned_cols=37 Identities=27% Similarity=0.219 Sum_probs=27.0
Q ss_pred CCCeEEEecCCC-Ch-hHHHHHHc-CCeEEEEeCCHHHHH
Q 015966 189 SPPACLVPGAGL-GR-LALEISHL-GFISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGCGl-GR-La~eLA~~-Gf~V~GnD~S~~ML~ 225 (397)
.+.+|++.|+|. |+ ++..|.+. |+.|.++|.+..-+.
T Consensus 38 ~~~~v~IiG~G~~G~~~a~~L~~~~g~~V~vid~~~~~~~ 77 (183)
T 3c85_A 38 GHAQVLILGMGRIGTGAYDELRARYGKISLGIEIREEAAQ 77 (183)
T ss_dssp TTCSEEEECCSHHHHHHHHHHHHHHCSCEEEEESCHHHHH
T ss_pred CCCcEEEECCCHHHHHHHHHHHhccCCeEEEEECCHHHHH
Confidence 356899998763 32 24556677 999999999987653
|
| >2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A* | Back alignment and structure |
|---|
Probab=90.74 E-value=0.15 Score=49.28 Aligned_cols=37 Identities=30% Similarity=0.265 Sum_probs=30.8
Q ss_pred CC--CeEEEecC--CCChhHHHHHH-cCC-eEEEEeCCHHHHH
Q 015966 189 SP--PACLVPGA--GLGRLALEISH-LGF-ISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~--~rVLvPGC--GlGRLa~eLA~-~Gf-~V~GnD~S~~ML~ 225 (397)
++ .+||+.|+ |.|.++..+|+ +|+ .|.+.+.+..-+.
T Consensus 158 ~g~~~~vlI~GasggiG~~~~~~a~~~Ga~~Vi~~~~~~~~~~ 200 (357)
T 2zb4_A 158 AGSNKTMVVSGAAGACGSVAGQIGHFLGCSRVVGICGTHEKCI 200 (357)
T ss_dssp TTSCCEEEESSTTBHHHHHHHHHHHHTTCSEEEEEESCHHHHH
T ss_pred CCCccEEEEECCCcHHHHHHHHHHHHCCCCeEEEEeCCHHHHH
Confidence 56 89999997 88999888876 599 9999999976654
|
| >3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans} | Back alignment and structure |
|---|
Probab=90.54 E-value=0.32 Score=46.84 Aligned_cols=39 Identities=18% Similarity=0.239 Sum_probs=31.3
Q ss_pred CCCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHHHH
Q 015966 188 ESPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMICS 227 (397)
Q Consensus 188 ~~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s 227 (397)
+++.+||+.|+ |.|.++..+|+. |+.|.+. .|..-+..+
T Consensus 149 ~~g~~VlV~Ga~g~iG~~~~q~a~~~Ga~Vi~~-~~~~~~~~~ 190 (343)
T 3gaz_A 149 QDGQTVLIQGGGGGVGHVAIQIALARGARVFAT-ARGSDLEYV 190 (343)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEE-ECHHHHHHH
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE-eCHHHHHHH
Confidence 46789999994 689999999875 9999999 787665443
|
| >3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334} | Back alignment and structure |
|---|
Probab=90.48 E-value=1.2 Score=38.99 Aligned_cols=33 Identities=18% Similarity=-0.015 Sum_probs=24.5
Q ss_pred eEEEecC--CCChh-HHHHHHcCCeEEEEeCCHHHH
Q 015966 192 ACLVPGA--GLGRL-ALEISHLGFISQGNEFSYYMM 224 (397)
Q Consensus 192 rVLvPGC--GlGRL-a~eLA~~Gf~V~GnD~S~~ML 224 (397)
+||+.|+ |+|+. +..|+++|++|.+++-+..-+
T Consensus 2 kilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~~ 37 (224)
T 3h2s_A 2 KIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQKA 37 (224)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHH
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccccc
Confidence 6999996 34443 566677899999999887543
|
| >1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 | Back alignment and structure |
|---|
Probab=90.24 E-value=0.19 Score=47.85 Aligned_cols=35 Identities=26% Similarity=0.321 Sum_probs=29.2
Q ss_pred eEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHHH
Q 015966 192 ACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMIC 226 (397)
Q Consensus 192 rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~~ 226 (397)
+||+.|+ |.|.++..+|+. |+.|.+.+-|..-+..
T Consensus 152 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~ 189 (328)
T 1xa0_A 152 PVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDY 189 (328)
T ss_dssp CEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHH
T ss_pred eEEEecCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHH
Confidence 7999997 889999999874 9999999988655543
|
| >3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=89.78 E-value=1.1 Score=39.95 Aligned_cols=36 Identities=22% Similarity=0.088 Sum_probs=26.9
Q ss_pred CCCeEEEecC--CCCh-hHHHHHHcCCeEEEEeCCHHHH
Q 015966 189 SPPACLVPGA--GLGR-LALEISHLGFISQGNEFSYYMM 224 (397)
Q Consensus 189 ~~~rVLvPGC--GlGR-La~eLA~~Gf~V~GnD~S~~ML 224 (397)
++.+||+.|+ |+|+ ++..|+++|++|.+++-+..-+
T Consensus 20 ~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~R~~~~~ 58 (236)
T 3e8x_A 20 QGMRVLVVGANGKVARYLLSELKNKGHEPVAMVRNEEQG 58 (236)
T ss_dssp -CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSGGGH
T ss_pred CCCeEEEECCCChHHHHHHHHHHhCCCeEEEEECChHHH
Confidence 5679999997 4454 4667778899999999886543
|
| >3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A* | Back alignment and structure |
|---|
Probab=89.55 E-value=1 Score=47.59 Aligned_cols=74 Identities=23% Similarity=0.307 Sum_probs=51.2
Q ss_pred cceeEecccccccCC-C-CCCCCccEEEEeeccCCh---hh----HHHHHHHHHHhccCCcEEEEecCCcchhhhccCCC
Q 015966 277 GFSMCGGDFVEVYSD-P-SQVGAWDAVVTCFFIDTA---HN----IVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 347 (397)
Q Consensus 277 ~ls~~~GDF~ely~~-~-~~~~~fD~VvT~FFIDta---~N----i~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~ 347 (397)
.+.++.||..+.... + ...+.+|++ |+|-. .| -.++|..+.+++||||.+..++
T Consensus 149 ~l~l~~gd~~~~l~~~~~~~~~~~da~----flD~f~p~~np~~w~~~~~~~l~~~~~~g~~~~t~~------------- 211 (689)
T 3pvc_A 149 TLDLWFGDVNTLLPTLDDSLNNQVDAW----FLDGFAPAKNPDMWNEQLFNAMARMTRPGGTFSTFT------------- 211 (689)
T ss_dssp EEEEEESCHHHHGGGCCGGGTTCEEEE----EECSSCC--CCTTCSHHHHHHHHHHEEEEEEEEESC-------------
T ss_pred EEEEEccCHHHHHhhcccccCCceeEE----EECCCCCCCChhhhhHHHHHHHHHHhCCCCEEEecc-------------
Confidence 388999999876431 0 013567776 66632 12 1588999999999999988421
Q ss_pred CCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 348 DEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 348 ~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
....+++.+.++||.+.+..
T Consensus 212 -------~~~~vr~~l~~aGf~~~~~~ 231 (689)
T 3pvc_A 212 -------AAGFVRRGLQQAGFNVTKVK 231 (689)
T ss_dssp -------CCHHHHHHHHHTTCEEEEEE
T ss_pred -------CcHHHHHHHHhCCeEEEecc
Confidence 12578899999999988743
|
| >2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* | Back alignment and structure |
|---|
Probab=88.87 E-value=0.39 Score=46.35 Aligned_cols=32 Identities=22% Similarity=0.214 Sum_probs=27.2
Q ss_pred CeEEEecCC-CChhH-HHHH-H-cCCe-EEEEeCCHH
Q 015966 191 PACLVPGAG-LGRLA-LEIS-H-LGFI-SQGNEFSYY 222 (397)
Q Consensus 191 ~rVLvPGCG-lGRLa-~eLA-~-~Gf~-V~GnD~S~~ 222 (397)
.+||+.|+| .|.++ ..+| + +|+. |.+++-+..
T Consensus 174 ~~VlV~GaG~vG~~a~iqla~k~~Ga~~Vi~~~~~~~ 210 (357)
T 2b5w_A 174 SSAFVLGNGSLGLLTLAMLKVDDKGYENLYCLGRRDR 210 (357)
T ss_dssp CEEEEECCSHHHHHHHHHHHHCTTCCCEEEEEECCCS
T ss_pred CEEEEECCCHHHHHHHHHHHHHHcCCcEEEEEeCCcc
Confidence 799999976 48888 9999 5 5997 999999875
|
| >1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A* | Back alignment and structure |
|---|
Probab=88.86 E-value=0.28 Score=46.66 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=28.9
Q ss_pred eEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHHH
Q 015966 192 ACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMIC 226 (397)
Q Consensus 192 rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~~ 226 (397)
+||+.|+ |.|.++..+|+. |+.|.+.+-|..-+..
T Consensus 153 ~VlV~Ga~G~vG~~~~q~a~~~Ga~vi~~~~~~~~~~~ 190 (330)
T 1tt7_A 153 SVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAADY 190 (330)
T ss_dssp CEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHHH
T ss_pred eEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHH
Confidence 7999997 789999998875 9999999988655443
|
| >3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A* | Back alignment and structure |
|---|
Probab=88.68 E-value=0.34 Score=47.21 Aligned_cols=38 Identities=21% Similarity=0.264 Sum_probs=30.3
Q ss_pred CCCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHHH
Q 015966 188 ESPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMIC 226 (397)
Q Consensus 188 ~~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~~ 226 (397)
+++.+||+.|+ |+|.++..||+. |+.|.+.- |..=+..
T Consensus 163 ~~g~~VlV~Ga~G~vG~~a~qla~~~Ga~Vi~~~-~~~~~~~ 203 (371)
T 3gqv_A 163 SKPVYVLVYGGSTATATVTMQMLRLSGYIPIATC-SPHNFDL 203 (371)
T ss_dssp SSCCEEEEESTTSHHHHHHHHHHHHTTCEEEEEE-CGGGHHH
T ss_pred CCCcEEEEECCCcHHHHHHHHHHHHCCCEEEEEe-CHHHHHH
Confidence 46789999998 499999999885 99998884 7655543
|
| >3oig_A Enoyl-[acyl-carrier-protein] reductase [NADH]; fatty acid synthesis, rossmann-like fold, enoyl-ACP reductas binding; HET: NAD IMJ; 1.25A {Bacillus subtilis} SCOP: c.2.1.2 PDB: 3oif_A* 2qio_A* 3oje_A 3ojf_A* | Back alignment and structure |
|---|
Probab=88.42 E-value=1.4 Score=40.15 Aligned_cols=36 Identities=11% Similarity=-0.017 Sum_probs=28.9
Q ss_pred CCCeEEEecCC----CCh-hHHHHHHcCCeEEEEeCCHHHH
Q 015966 189 SPPACLVPGAG----LGR-LALEISHLGFISQGNEFSYYMM 224 (397)
Q Consensus 189 ~~~rVLvPGCG----lGR-La~eLA~~Gf~V~GnD~S~~ML 224 (397)
++.+||+-|++ .|+ ++..|+++|+.|..++-+....
T Consensus 6 ~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~ 46 (266)
T 3oig_A 6 EGRNIVVMGVANKRSIAWGIARSLHEAGARLIFTYAGERLE 46 (266)
T ss_dssp TTCEEEEECCCSTTSHHHHHHHHHHHTTCEEEEEESSGGGH
T ss_pred CCCEEEEEcCCCCCcHHHHHHHHHHHCCCEEEEecCchHHH
Confidence 46789999965 676 6899999999999998876443
|
| >2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59 | Back alignment and structure |
|---|
Probab=88.22 E-value=0.67 Score=44.92 Aligned_cols=109 Identities=11% Similarity=-0.038 Sum_probs=71.0
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccccc
Q 015966 171 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (397)
Q Consensus 171 y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~S 250 (397)
..|+++.|... ++..+||.=+|+|.++.|+.+.|-.++.+|.+..-+.+-+ +.
T Consensus 80 l~~yf~~l~~~-------n~~~~LDlfaGSGaLgiEaLS~~d~~vfvE~~~~a~~~L~---~N----------------- 132 (283)
T 2oo3_A 80 FLEYISVIKQI-------NLNSTLSYYPGSPYFAINQLRSQDRLYLCELHPTEYNFLL---KL----------------- 132 (283)
T ss_dssp GHHHHHHHHHH-------SSSSSCCEEECHHHHHHHHSCTTSEEEEECCSHHHHHHHT---TS-----------------
T ss_pred HHHHHHHHHHh-------cCCCceeEeCCcHHHHHHHcCCCCeEEEEeCCHHHHHHHH---HH-----------------
Confidence 45788888773 2346899999999999999998878999999997764222 00
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcceeEeccccc-ccCCCCCCCCccEEEEeeccCCh----hhHHHHHHHHHH--h
Q 015966 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVE-VYSDPSQVGAWDAVVTCFFIDTA----HNIVEYIEIISR--I 323 (397)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~e-ly~~~~~~~~fD~VvT~FFIDta----~Ni~~yi~~I~~--~ 323 (397)
... ..++.++.+|... +........+||+| |||.. ....+.++.|.+ .
T Consensus 133 -l~~--------------------~~~~~V~~~D~~~~L~~l~~~~~~fdLV----fiDPPYe~k~~~~~vl~~L~~~~~ 187 (283)
T 2oo3_A 133 -PHF--------------------NKKVYVNHTDGVSKLNALLPPPEKRGLI----FIDPSYERKEEYKEIPYAIKNAYS 187 (283)
T ss_dssp -CCT--------------------TSCEEEECSCHHHHHHHHCSCTTSCEEE----EECCCCCSTTHHHHHHHHHHHHHH
T ss_pred -hCc--------------------CCcEEEEeCcHHHHHHHhcCCCCCccEE----EECCCCCCCcHHHHHHHHHHHhCc
Confidence 000 1225667778543 21100123569988 67763 245556666665 4
Q ss_pred ccCCcEEE
Q 015966 324 LKDGGVWI 331 (397)
Q Consensus 324 LKPGG~wI 331 (397)
+.|+|+.+
T Consensus 188 r~~~Gi~v 195 (283)
T 2oo3_A 188 KFSTGLYC 195 (283)
T ss_dssp HCTTSEEE
T ss_pred cCCCeEEE
Confidence 56899999
|
| >3dqp_A Oxidoreductase YLBE; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; 1.40A {Lactococcus lactis subsp} | Back alignment and structure |
|---|
Probab=88.03 E-value=1.4 Score=38.80 Aligned_cols=29 Identities=14% Similarity=0.229 Sum_probs=21.2
Q ss_pred eEEEecCCCChhHH----HHHHcCCeEEEEeCCH
Q 015966 192 ACLVPGAGLGRLAL----EISHLGFISQGNEFSY 221 (397)
Q Consensus 192 rVLvPGCGlGRLa~----eLA~~Gf~V~GnD~S~ 221 (397)
+||+.|+ +|.++. .|+++|++|.+++-+.
T Consensus 2 ~ilItGa-tG~iG~~l~~~L~~~g~~V~~~~R~~ 34 (219)
T 3dqp_A 2 KIFIVGS-TGRVGKSLLKSLSTTDYQIYAGARKV 34 (219)
T ss_dssp EEEEEST-TSHHHHHHHHHHTTSSCEEEEEESSG
T ss_pred eEEEECC-CCHHHHHHHHHHHHCCCEEEEEECCc
Confidence 7999994 455544 4556699999988775
|
| >4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens} | Back alignment and structure |
|---|
Probab=87.86 E-value=2.4 Score=41.74 Aligned_cols=115 Identities=10% Similarity=0.042 Sum_probs=70.3
Q ss_pred CCeEEEecCCC-C-hhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 190 PPACLVPGAGL-G-RLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 190 ~~rVLvPGCGl-G-RLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
..+|.++|+|. | .++..|++.|+.|.+.|.+..-+.... .. .+.
T Consensus 22 ~mkIgiIGlG~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~---~~---------------------------g~~---- 67 (358)
T 4e21_A 22 SMQIGMIGLGRMGADMVRRLRKGGHECVVYDLNVNAVQALE---RE---------------------------GIA---- 67 (358)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHHH---TT---------------------------TCB----
T ss_pred CCEEEEECchHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHH---HC---------------------------CCE----
Confidence 46899998773 3 347778888999999999987643211 00 000
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCC
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 347 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~ 347 (397)
...+..++.. .....|+|++|---+ .+.+.++.+...|+||-++|+.+-..+
T Consensus 68 -------------~~~s~~e~~~---~a~~~DvVi~~vp~~---~v~~vl~~l~~~l~~g~iiId~st~~~--------- 119 (358)
T 4e21_A 68 -------------GARSIEEFCA---KLVKPRVVWLMVPAA---VVDSMLQRMTPLLAANDIVIDGGNSHY--------- 119 (358)
T ss_dssp -------------CCSSHHHHHH---HSCSSCEEEECSCGG---GHHHHHHHHGGGCCTTCEEEECSSCCH---------
T ss_pred -------------EeCCHHHHHh---cCCCCCEEEEeCCHH---HHHHHHHHHHhhCCCCCEEEeCCCCCh---------
Confidence 0112223221 113459998765333 467788899999999999998654322
Q ss_pred CCccccCCHHHHHHHHHhCCCEEEE
Q 015966 348 DEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 348 ~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
-+..++.+.+.+.|..++.
T Consensus 120 ------~~~~~~~~~l~~~g~~~vd 138 (358)
T 4e21_A 120 ------QDDIRRADQMRAQGITYVD 138 (358)
T ss_dssp ------HHHHHHHHHHHTTTCEEEE
T ss_pred ------HHHHHHHHHHHHCCCEEEe
Confidence 1223445556666776654
|
| >3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=87.72 E-value=1.2 Score=45.73 Aligned_cols=34 Identities=12% Similarity=0.010 Sum_probs=30.5
Q ss_pred CCCeEEEecCCC--ChhHHHHHHcCCeEEEEeCCHH
Q 015966 189 SPPACLVPGAGL--GRLALEISHLGFISQGNEFSYY 222 (397)
Q Consensus 189 ~~~rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ 222 (397)
+-.+|-++|+|+ +.+|.-||+.|+.|+..|.+..
T Consensus 53 ~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~e 88 (460)
T 3k6j_A 53 DVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNEQ 88 (460)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHH
T ss_pred cCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcHH
Confidence 446899999997 6789999999999999999997
|
| >1boo_A Protein (N-4 cytosine-specific methyltransferase PVU II); type II DNA-(cytosine N4) methyltransferase, amino methylation, selenomethionine; HET: SAH; 2.80A {Proteus vulgaris} SCOP: c.66.1.11 | Back alignment and structure |
|---|
Probab=87.65 E-value=1.4 Score=42.40 Aligned_cols=88 Identities=19% Similarity=0.320 Sum_probs=54.5
Q ss_pred ceeEecccccccCCCCCCCCccEEEEe--eccCC------------hhhHHHHHHHHHHhccCCcEEE-EecCCcchhhh
Q 015966 278 FSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDT------------AHNIVEYIEIISRILKDGGVWI-NLGPLLYHFAD 342 (397)
Q Consensus 278 ls~~~GDF~ely~~~~~~~~fD~VvT~--FFIDt------------a~Ni~~yi~~I~~~LKPGG~wI-N~GPLlYh~~d 342 (397)
..++.||.+++... -.+++||+|+|- |.... ...+.+.++.++++|||||.++ .++.. | ..
T Consensus 15 ~~ii~gD~~~~l~~-l~~~svDlI~tDPPY~~~~~~~y~~~~~~~~~~~l~~~l~~~~rvLk~~G~i~i~~~d~-~--~~ 90 (323)
T 1boo_A 15 GSMYIGDSLELLES-FPEESISLVMTSPPFALQRKKEYGNLEQHEYVDWFLSFAKVVNKKLKPDGSFVVDFGGA-Y--MK 90 (323)
T ss_dssp EEEEESCHHHHGGG-SCSSCEEEEEECCCCSSSCSCSSCSCHHHHHHHHHHHHHHHHHHHEEEEEEEEEEECCC-E--ET
T ss_pred ceEEeCcHHHHHhh-CCCCCeeEEEECCCCCCCcccccCCcCHHHHHHHHHHHHHHHHHHCcCCcEEEEEECCE-e--cC
Confidence 67889998774321 125789999987 54431 1236678889999999999765 34432 1 00
Q ss_pred ccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 343 LYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 343 ~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
+ .+ ....+.+..+..+++..||.+..+
T Consensus 91 --g-~~-~~~~~~~~~i~~~~~~~Gf~~~~~ 117 (323)
T 1boo_A 91 --G-VP-ARSIYNFRVLIRMIDEVGFFLAED 117 (323)
T ss_dssp --T-EE-EECCHHHHHHHHHHHTTCCEEEEE
T ss_pred --C-Cc-ccccchHHHHHHHHHhCCCEEEEE
Confidence 0 00 000124556777888999988753
|
| >4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli} | Back alignment and structure |
|---|
Probab=87.60 E-value=0.78 Score=44.59 Aligned_cols=40 Identities=20% Similarity=0.292 Sum_probs=32.7
Q ss_pred CCCeEEEec--CCCChhHHHHHHc--CCeEEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPG--AGLGRLALEISHL--GFISQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPG--CGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~ 228 (397)
++.+||+.| .|.|.++..+|+. |..|.+++-+..-+..++
T Consensus 171 ~g~~VlV~Ga~G~vG~~a~qlak~~~g~~Vi~~~~~~~~~~~~~ 214 (363)
T 4dvj_A 171 AAPAILIVGGAGGVGSIAVQIARQRTDLTVIATASRPETQEWVK 214 (363)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHCCSEEEEECSSHHHHHHHH
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHH
Confidence 567999998 4679999999985 899999999987665443
|
| >1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A* | Back alignment and structure |
|---|
Probab=87.27 E-value=0.7 Score=44.91 Aligned_cols=37 Identities=16% Similarity=0.011 Sum_probs=29.5
Q ss_pred CCCeEEEecCCC-ChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015966 189 SPPACLVPGAGL-GRLALEISHL-GFISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (397)
++.+||+.|+|. |.++..+|+. |+.|.+.+-|..-+.
T Consensus 187 ~g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~~~~~ 225 (366)
T 1yqd_A 187 PGKHIGIVGLGGLGHVAVKFAKAFGSKVTVISTSPSKKE 225 (366)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCGGGHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 567999999863 7778888764 999999998876553
|
| >2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* | Back alignment and structure |
|---|
Probab=87.25 E-value=0.96 Score=43.75 Aligned_cols=32 Identities=22% Similarity=0.146 Sum_probs=26.8
Q ss_pred CCeEEEecCC-CChhHHHHHH-cCCeEEEEeCCH
Q 015966 190 PPACLVPGAG-LGRLALEISH-LGFISQGNEFSY 221 (397)
Q Consensus 190 ~~rVLvPGCG-lGRLa~eLA~-~Gf~V~GnD~S~ 221 (397)
+.+||+.|+| .|.++..+|+ +|+.|.+++.+.
T Consensus 181 g~~VlV~GaG~vG~~~~q~a~~~Ga~Vi~~~~~~ 214 (366)
T 2cdc_A 181 CRKVLVVGTGPIGVLFTLLFRTYGLEVWMANRRE 214 (366)
T ss_dssp TCEEEEESCHHHHHHHHHHHHHHTCEEEEEESSC
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCc
Confidence 6799999985 4777778776 599999999986
|
| >1eg2_A Modification methylase RSRI; rossmann fold, exocyclic amino DNA methyltransferase RSRI, D binding, DNA modification, DNA methylation; HET: MTA; 1.75A {Rhodobacter sphaeroides} SCOP: c.66.1.11 PDB: 1nw5_A* 1nw6_A* 1nw7_A* 1nw8_A | Back alignment and structure |
|---|
Probab=87.23 E-value=0.98 Score=43.84 Aligned_cols=52 Identities=17% Similarity=-0.019 Sum_probs=42.4
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCH---HHHHHHH
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSY---YMMICSS 228 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~---~ML~~s~ 228 (397)
.+++.|.+.+. .++..||||=||.|..+....++|....|+|++. .+...+.
T Consensus 230 ~l~~~~i~~~~----~~~~~vlDpF~GsGtt~~aa~~~~r~~ig~e~~~~~~~~~~~~~ 284 (319)
T 1eg2_A 230 AVIERLVRALS----HPGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQL 284 (319)
T ss_dssp HHHHHHHHHHS----CTTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHH
T ss_pred HHHHHHHHHhC----CCCCEEEecCCCCCHHHHHHHHcCCcEEEEECCccHHHHHHHHH
Confidence 35566655543 2577999999999999999999999999999999 7776655
|
| >3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A* | Back alignment and structure |
|---|
Probab=86.85 E-value=3.8 Score=39.34 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=29.6
Q ss_pred CCeEEEecCCC--ChhHHHHHHcCC--eEEEEeCCHHHHH
Q 015966 190 PPACLVPGAGL--GRLALEISHLGF--ISQGNEFSYYMMI 225 (397)
Q Consensus 190 ~~rVLvPGCGl--GRLa~eLA~~Gf--~V~GnD~S~~ML~ 225 (397)
..+|.++|+|. |.++..|++.|+ +|.+.|-+..-+.
T Consensus 33 ~~kI~IIG~G~mG~slA~~l~~~G~~~~V~~~dr~~~~~~ 72 (314)
T 3ggo_A 33 MQNVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESIS 72 (314)
T ss_dssp CSEEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHH
T ss_pred CCEEEEEeeCHHHHHHHHHHHhCCCCCEEEEEECCHHHHH
Confidence 36899999885 456788888999 9999999987654
|
| >3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=86.57 E-value=2 Score=40.47 Aligned_cols=36 Identities=14% Similarity=0.027 Sum_probs=28.3
Q ss_pred CCeEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHHH
Q 015966 190 PPACLVPGAGL--GRLALEISHLGFISQGNEFSYYMMI 225 (397)
Q Consensus 190 ~~rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ML~ 225 (397)
..+|.++|+|. +.++..|++.|++|++.|.+..-+.
T Consensus 7 ~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~~ 44 (303)
T 3g0o_A 7 DFHVGIVGLGSMGMGAARSCLRAGLSTWGADLNPQACA 44 (303)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEECCHHHHH
Confidence 46899998874 3357778888999999999987653
|
| >4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP} | Back alignment and structure |
|---|
Probab=86.52 E-value=2.9 Score=39.89 Aligned_cols=36 Identities=17% Similarity=0.097 Sum_probs=29.0
Q ss_pred CCCeEEEecCCC-Ch-hHHHHHHcCCeEEEEeCCHHHH
Q 015966 189 SPPACLVPGAGL-GR-LALEISHLGFISQGNEFSYYMM 224 (397)
Q Consensus 189 ~~~rVLvPGCGl-GR-La~eLA~~Gf~V~GnD~S~~ML 224 (397)
...+|.++|+|. |+ ++..|++.|++|++.|.+..-+
T Consensus 30 ~~~~I~iIG~G~mG~~~a~~l~~~G~~V~~~dr~~~~~ 67 (320)
T 4dll_A 30 YARKITFLGTGSMGLPMARRLCEAGYALQVWNRTPARA 67 (320)
T ss_dssp CCSEEEEECCTTTHHHHHHHHHHTTCEEEEECSCHHHH
T ss_pred CCCEEEEECccHHHHHHHHHHHhCCCeEEEEcCCHHHH
Confidence 456899999984 44 5778888999999999998654
|
| >3kkj_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae PV} | Back alignment and structure |
|---|
Probab=86.41 E-value=0.4 Score=40.42 Aligned_cols=29 Identities=21% Similarity=0.239 Sum_probs=26.2
Q ss_pred eEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 015966 192 ACLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (397)
Q Consensus 192 rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S 220 (397)
.|+++|+|...| |..|+++|++|+-+|-+
T Consensus 4 dV~IIGaGpaGL~aA~~La~~G~~V~v~Ek~ 34 (336)
T 3kkj_A 4 PIAIIGTGIAGLSAAQALTAAGHQVHLFDKS 34 (336)
T ss_dssp CEEEECCSHHHHHHHHHHHHTTCCEEEECSS
T ss_pred CEEEECcCHHHHHHHHHHHHCCCCEEEEECC
Confidence 499999999998 78899999999999954
|
| >2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens} | Back alignment and structure |
|---|
Probab=86.34 E-value=0.46 Score=46.20 Aligned_cols=36 Identities=17% Similarity=0.168 Sum_probs=28.7
Q ss_pred CCCCeEEEec--CCCChhHHHHHHc-CCeEEEEeCCHHHH
Q 015966 188 ESPPACLVPG--AGLGRLALEISHL-GFISQGNEFSYYMM 224 (397)
Q Consensus 188 ~~~~rVLvPG--CGlGRLa~eLA~~-Gf~V~GnD~S~~ML 224 (397)
+++.+||+.| .|.|.++..+|+. |..|.+.+ |..-+
T Consensus 182 ~~g~~VlV~Ga~G~vG~~~~qla~~~Ga~Vi~~~-~~~~~ 220 (375)
T 2vn8_A 182 CTGKRVLILGASGGVGTFAIQVMKAWDAHVTAVC-SQDAS 220 (375)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE-CGGGH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhCCCEEEEEe-ChHHH
Confidence 4678999999 4689999998875 99999988 65443
|
| >2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A* | Back alignment and structure |
|---|
Probab=85.64 E-value=0.53 Score=46.54 Aligned_cols=37 Identities=24% Similarity=0.280 Sum_probs=25.9
Q ss_pred CCCeEEEecCCC-ChhHHHH-HHcCCeEEEEeCCHHHHH
Q 015966 189 SPPACLVPGAGL-GRLALEI-SHLGFISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eL-A~~Gf~V~GnD~S~~ML~ 225 (397)
++.+|++.|+|. |+.+..+ ...|.+|.+.|.+..-+.
T Consensus 167 ~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~~~l~ 205 (377)
T 2vhw_A 167 EPADVVVIGAGTAGYNAARIANGMGATVTVLDINIDKLR 205 (377)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 567999999842 3333333 335999999999987654
|
| >4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A* | Back alignment and structure |
|---|
Probab=85.59 E-value=3.2 Score=38.78 Aligned_cols=37 Identities=16% Similarity=0.319 Sum_probs=30.1
Q ss_pred CeEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHHHHH
Q 015966 191 PACLVPGAGL--GRLALEISHLGFISQGNEFSYYMMICS 227 (397)
Q Consensus 191 ~rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ML~~s 227 (397)
.+|.++|+|+ +.+|..+++.|++|+..|.+..-+..+
T Consensus 5 ~kV~VIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~ 43 (283)
T 4e12_A 5 TNVTVLGTGVLGSQIAFQTAFHGFAVTAYDINTDALDAA 43 (283)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSHHHHHHH
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHH
Confidence 5899999886 345777888999999999999877543
|
| >1y1p_A ARII, aldehyde reductase II; rossmann fold, short chain dehydrogenase reductase, oxidoreductase; HET: NMN AMP; 1.60A {Sporidiobolus salmonicolor} SCOP: c.2.1.2 PDB: 1ujm_A* 1zze_A | Back alignment and structure |
|---|
Probab=85.56 E-value=9.2 Score=35.25 Aligned_cols=35 Identities=20% Similarity=0.210 Sum_probs=25.9
Q ss_pred CCCeEEEecC--CCCh-hHHHHHHcCCeEEEEeCCHHH
Q 015966 189 SPPACLVPGA--GLGR-LALEISHLGFISQGNEFSYYM 223 (397)
Q Consensus 189 ~~~rVLvPGC--GlGR-La~eLA~~Gf~V~GnD~S~~M 223 (397)
++.+||+-|+ ++|+ ++..|+++|++|.+++-+..-
T Consensus 10 ~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~~~~ 47 (342)
T 1y1p_A 10 EGSLVLVTGANGFVASHVVEQLLEHGYKVRGTARSASK 47 (342)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESSHHH
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeCCccc
Confidence 5679999997 3343 355667789999999988653
|
| >3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str} | Back alignment and structure |
|---|
Probab=85.53 E-value=0.52 Score=47.42 Aligned_cols=37 Identities=30% Similarity=0.433 Sum_probs=27.8
Q ss_pred CCCeEEEecCCC-ChhHHHHH-HcCCeEEEEeCCHHHHH
Q 015966 189 SPPACLVPGAGL-GRLALEIS-HLGFISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA-~~Gf~V~GnD~S~~ML~ 225 (397)
++.+|+++|+|. |+.+..++ ..|.+|++.|.+..-+.
T Consensus 183 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~ 221 (381)
T 3p2y_A 183 KPASALVLGVGVAGLQALATAKRLGAKTTGYDVRPEVAE 221 (381)
T ss_dssp CCCEEEEESCSHHHHHHHHHHHHHTCEEEEECSSGGGHH
T ss_pred CCCEEEEECchHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 567999999983 55555444 45999999999987554
|
| >4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} | Back alignment and structure |
|---|
Probab=85.26 E-value=0.71 Score=43.92 Aligned_cols=41 Identities=20% Similarity=0.243 Sum_probs=30.8
Q ss_pred CCCCeEEEecCC-CChhHHHHHHc-CCe-EEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGAG-LGRLALEISHL-GFI-SQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGCG-lGRLa~eLA~~-Gf~-V~GnD~S~~ML~~s~ 228 (397)
.++.+||+.|+| .|.++..+|++ |+. +.++|.|..=+..++
T Consensus 159 ~~g~~VlV~GaG~vG~~aiq~ak~~G~~~vi~~~~~~~k~~~a~ 202 (346)
T 4a2c_A 159 CENKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDISSEKLALAK 202 (346)
T ss_dssp CTTSEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEECCCCcchHHHHHHHHcCCcEEEEEechHHHHHHHH
Confidence 367899999987 46677777765 876 579999987765444
|
| >2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=84.98 E-value=0.81 Score=44.92 Aligned_cols=37 Identities=16% Similarity=0.192 Sum_probs=26.0
Q ss_pred CCCeEEEecCC-CChhHH-HHHHcCCeEEEEeCCHHHHH
Q 015966 189 SPPACLVPGAG-LGRLAL-EISHLGFISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGCG-lGRLa~-eLA~~Gf~V~GnD~S~~ML~ 225 (397)
++.+|++.|+| .|+.+. .++..|++|.+.|.+..-+.
T Consensus 165 ~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~~~~~ 203 (369)
T 2eez_A 165 APASVVILGGGTVGTNAAKIALGMGAQVTILDVNHKRLQ 203 (369)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHH
Confidence 45799999984 233332 33456999999999987653
|
| >1zcj_A Peroxisomal bifunctional enzyme; peroxisomal multifunctional enzyme type 1, L-bifunction enzyme, MFE-1, fatty acid beta oxidation; 1.90A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=84.63 E-value=6.5 Score=39.83 Aligned_cols=39 Identities=15% Similarity=0.135 Sum_probs=32.4
Q ss_pred CCCeEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHHHHH
Q 015966 189 SPPACLVPGAGL--GRLALEISHLGFISQGNEFSYYMMICS 227 (397)
Q Consensus 189 ~~~rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ML~~s 227 (397)
+-.+|.++|+|+ +.+|.-|++.|+.|++.|.+..-+..+
T Consensus 36 ~~~kV~VIGaG~MG~~iA~~la~~G~~V~l~D~~~~~~~~~ 76 (463)
T 1zcj_A 36 PVSSVGVLGLGTMGRGIAISFARVGISVVAVESDPKQLDAA 76 (463)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSHHHHHHH
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEECCHHHHHHH
Confidence 345899999997 457889999999999999999876543
|
| >1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A* | Back alignment and structure |
|---|
Probab=84.52 E-value=0.65 Score=45.89 Aligned_cols=37 Identities=24% Similarity=0.356 Sum_probs=27.5
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-cCCeEEEEeCCHHHHH
Q 015966 189 SPPACLVPGAGL-GRLALEISH-LGFISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~-~Gf~V~GnD~S~~ML~ 225 (397)
++.+|+++|+|. |+.+..+++ .|..|++.|.+..-+.
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~~~~~ 209 (384)
T 1l7d_A 171 PPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRAATKE 209 (384)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCSTTHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 577999999873 555555554 5999999999875543
|
| >3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=84.33 E-value=3.4 Score=35.76 Aligned_cols=32 Identities=16% Similarity=-0.027 Sum_probs=24.3
Q ss_pred eEEEecC--CCCh-hHHHHHHcCCeEEEEeCCHHH
Q 015966 192 ACLVPGA--GLGR-LALEISHLGFISQGNEFSYYM 223 (397)
Q Consensus 192 rVLvPGC--GlGR-La~eLA~~Gf~V~GnD~S~~M 223 (397)
+||+.|+ |+|+ ++..|+++|++|.+++-+..-
T Consensus 2 kvlVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~~ 36 (221)
T 3ew7_A 2 KIGIIGATGRAGSRILEEAKNRGHEVTAIVRNAGK 36 (221)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTTCEEEEEESCSHH
T ss_pred eEEEEcCCchhHHHHHHHHHhCCCEEEEEEcCchh
Confidence 7999996 3455 466677889999999887644
|
| >4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis} | Back alignment and structure |
|---|
Probab=84.17 E-value=0.45 Score=47.27 Aligned_cols=31 Identities=29% Similarity=0.276 Sum_probs=27.0
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015966 191 PACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (397)
Q Consensus 191 ~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (397)
++|+|+|+|.+.| |..||++|++|+-+|-+.
T Consensus 2 k~VvVIGaG~~GL~aA~~La~~G~~V~VlEa~~ 34 (501)
T 4dgk_A 2 KPTTVIGAGFGGLALAIRLQAAGIPVLLLEQRD 34 (501)
T ss_dssp CCEEEECCHHHHHHHHHHHHHTTCCEEEECCC-
T ss_pred CCEEEECCcHHHHHHHHHHHHCCCcEEEEccCC
Confidence 4799999999999 788999999999988543
|
| >3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A* | Back alignment and structure |
|---|
Probab=84.06 E-value=2.8 Score=43.46 Aligned_cols=37 Identities=19% Similarity=0.100 Sum_probs=25.8
Q ss_pred CCCeEEEecCCC-ChhHHHHH-HcCCeEEEEeCCHHHHH
Q 015966 189 SPPACLVPGAGL-GRLALEIS-HLGFISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA-~~Gf~V~GnD~S~~ML~ 225 (397)
.+.+|++.|+|. |+.+..++ ..|+.|.+.|.+..-+.
T Consensus 273 ~GktV~IiG~G~IG~~~A~~lka~Ga~Viv~d~~~~~~~ 311 (494)
T 3ce6_A 273 GGKKVLICGYGDVGKGCAEAMKGQGARVSVTEIDPINAL 311 (494)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred CcCEEEEEccCHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 678999999752 33333332 34999999999987654
|
| >3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=84.02 E-value=0.91 Score=43.01 Aligned_cols=37 Identities=19% Similarity=0.271 Sum_probs=28.6
Q ss_pred CCCCeEEEec--CCCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015966 188 ESPPACLVPG--AGLGRLALEISHL-GFISQGNEFSYYMMI 225 (397)
Q Consensus 188 ~~~~rVLvPG--CGlGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (397)
+++.+||+.| .|.|.++..+|+. |..|.+.. |..-+.
T Consensus 151 ~~g~~vlV~Ga~G~vG~~a~q~a~~~Ga~vi~~~-~~~~~~ 190 (321)
T 3tqh_A 151 KQGDVVLIHAGAGGVGHLAIQLAKQKGTTVITTA-SKRNHA 190 (321)
T ss_dssp CTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEE-CHHHHH
T ss_pred CCCCEEEEEcCCcHHHHHHHHHHHHcCCEEEEEe-ccchHH
Confidence 3678999996 4579999999875 99999987 443343
|
| >2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.90 E-value=1.5 Score=42.96 Aligned_cols=31 Identities=19% Similarity=0.311 Sum_probs=22.7
Q ss_pred CCCeEEEecCCCChhHHHHHH----cCCeEEEEeCCH
Q 015966 189 SPPACLVPGAGLGRLALEISH----LGFISQGNEFSY 221 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~----~Gf~V~GnD~S~ 221 (397)
.+.+|.++|. |+++..+|+ .|++|.+.|-+.
T Consensus 164 ~g~tvgIIGl--G~IG~~vA~~l~~~G~~V~~~d~~~ 198 (335)
T 2g76_A 164 NGKTLGILGL--GRIGREVATRMQSFGMKTIGYDPII 198 (335)
T ss_dssp TTCEEEEECC--SHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred CcCEEEEEeE--CHHHHHHHHHHHHCCCEEEEECCCc
Confidence 5678999965 666665554 489999998764
|
| >3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus} | Back alignment and structure |
|---|
Probab=83.78 E-value=0.92 Score=43.53 Aligned_cols=40 Identities=18% Similarity=0.208 Sum_probs=31.6
Q ss_pred CCCeEEEec-C-CCChhHHHHHHc-CCeEEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPG-A-GLGRLALEISHL-GFISQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPG-C-GlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~ 228 (397)
++.+||+.| + |.|.++..+|+. |+.|.+++-+..-+..++
T Consensus 150 ~g~~VlV~gg~G~vG~~a~qla~~~Ga~Vi~~~~~~~~~~~~~ 192 (346)
T 3fbg_A 150 EGKTLLIINGAGGVGSIATQIAKAYGLRVITTASRNETIEWTK 192 (346)
T ss_dssp TTCEEEEESTTSHHHHHHHHHHHHTTCEEEEECCSHHHHHHHH
T ss_pred CCCEEEEEcCCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 577999994 4 568899888875 999999999887665443
|
| >3ius_A Uncharacterized conserved protein; APC63810, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.66A {Ruegeria pomeroyi dss-3} | Back alignment and structure |
|---|
Probab=83.72 E-value=8.6 Score=34.77 Aligned_cols=30 Identities=20% Similarity=0.099 Sum_probs=22.9
Q ss_pred CeEEEecCCCChhHHHH----HHcCCeEEEEeCCHH
Q 015966 191 PACLVPGAGLGRLALEI----SHLGFISQGNEFSYY 222 (397)
Q Consensus 191 ~rVLvPGCGlGRLa~eL----A~~Gf~V~GnD~S~~ 222 (397)
.+||+.|+ |.++..| .++|++|.+.+-+..
T Consensus 6 ~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~~~ 39 (286)
T 3ius_A 6 GTLLSFGH--GYTARVLSRALAPQGWRIIGTSRNPD 39 (286)
T ss_dssp CEEEEETC--CHHHHHHHHHHGGGTCEEEEEESCGG
T ss_pred CcEEEECC--cHHHHHHHHHHHHCCCEEEEEEcChh
Confidence 58999995 7665554 456999999987764
|
| >3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium} | Back alignment and structure |
|---|
Probab=83.65 E-value=2.4 Score=39.97 Aligned_cols=35 Identities=14% Similarity=-0.027 Sum_probs=27.8
Q ss_pred CCeEEEecCCC-C-hhHHHHHHcCCeEEEEeCCHHHH
Q 015966 190 PPACLVPGAGL-G-RLALEISHLGFISQGNEFSYYMM 224 (397)
Q Consensus 190 ~~rVLvPGCGl-G-RLa~eLA~~Gf~V~GnD~S~~ML 224 (397)
..+|.++|+|. | .++..|++.|++|++.|.+..-+
T Consensus 15 ~~~I~vIG~G~mG~~~A~~l~~~G~~V~~~dr~~~~~ 51 (296)
T 3qha_A 15 QLKLGYIGLGNMGAPMATRMTEWPGGVTVYDIRIEAM 51 (296)
T ss_dssp CCCEEEECCSTTHHHHHHHHTTSTTCEEEECSSTTTS
T ss_pred CCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCHHHH
Confidence 35899999885 3 36778888899999999987543
|
| >4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=83.38 E-value=0.82 Score=46.33 Aligned_cols=38 Identities=21% Similarity=0.271 Sum_probs=28.2
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-cCCeEEEEeCCHHHHHH
Q 015966 189 SPPACLVPGAGL-GRLALEISH-LGFISQGNEFSYYMMIC 226 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~-~Gf~V~GnD~S~~ML~~ 226 (397)
++.+|+++|+|. |..+..+++ .|.+|++.|.+..-+..
T Consensus 189 ~~~kV~ViG~G~iG~~aa~~a~~lGa~V~v~D~~~~~l~~ 228 (405)
T 4dio_A 189 PAAKIFVMGAGVAGLQAIATARRLGAVVSATDVRPAAKEQ 228 (405)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSTTHHHH
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCEEEEEcCCHHHHHH
Confidence 568999999983 555544443 59999999999876543
|
| >2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=82.84 E-value=1.2 Score=43.08 Aligned_cols=32 Identities=13% Similarity=0.243 Sum_probs=24.0
Q ss_pred CCCeEEEecCCCChhHHHHHH----cCCeEEEEeCCHH
Q 015966 189 SPPACLVPGAGLGRLALEISH----LGFISQGNEFSYY 222 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~----~Gf~V~GnD~S~~ 222 (397)
.+.+|.++| +|+++..+|+ .|++|.+.|-+..
T Consensus 141 ~g~~vgIIG--~G~IG~~~A~~l~~~G~~V~~~d~~~~ 176 (313)
T 2ekl_A 141 AGKTIGIVG--FGRIGTKVGIIANAMGMKVLAYDILDI 176 (313)
T ss_dssp TTCEEEEES--CSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred CCCEEEEEe--eCHHHHHHHHHHHHCCCEEEEECCCcc
Confidence 567899986 5666666654 4999999998764
|
| >1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A* | Back alignment and structure |
|---|
Probab=82.59 E-value=0.74 Score=46.08 Aligned_cols=37 Identities=27% Similarity=0.363 Sum_probs=28.1
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-cCCeEEEEeCCHHHHH
Q 015966 189 SPPACLVPGAGL-GRLALEISH-LGFISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~-~Gf~V~GnD~S~~ML~ 225 (397)
++.+|++.|+|. |+.+..+|+ .|..|++.|.+..-+.
T Consensus 171 ~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~~~~~ 209 (401)
T 1x13_A 171 PPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKE 209 (401)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCGGGHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 467999999873 555555554 5999999999987654
|
| >3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa} | Back alignment and structure |
|---|
Probab=82.41 E-value=0.29 Score=53.27 Aligned_cols=35 Identities=20% Similarity=0.206 Sum_probs=29.1
Q ss_pred CCCCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCH
Q 015966 187 KESPPACLVPGA--GLGRLALEISHL-GFISQGNEFSY 221 (397)
Q Consensus 187 ~~~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~ 221 (397)
.+++.+||+.|+ |.|.++..||+. |.+|.+.+-+.
T Consensus 343 l~~G~~VLI~gaaGgvG~~aiqlAk~~Ga~V~~t~~~~ 380 (795)
T 3slk_A 343 LRPGESLLVHSAAGGVGMAAIQLARHLGAEVYATASED 380 (795)
T ss_dssp CCTTCCEEEESTTBHHHHHHHHHHHHTTCCEEEECCGG
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHcCCEEEEEeChH
Confidence 347889999994 799999999986 99999887543
|
| >2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A* | Back alignment and structure |
|---|
Probab=82.11 E-value=0.69 Score=56.50 Aligned_cols=75 Identities=13% Similarity=0.100 Sum_probs=26.6
Q ss_pred CCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecC--------CcchhhhccCCCCCccccCCHHHHHHHHHhC
Q 015966 295 VGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP--------LLYHFADLYGQEDEMSIELSLEDVKRVALHY 366 (397)
Q Consensus 295 ~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GP--------LlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~ 366 (397)
...||+|+...-+....++.+.++.+.++|||||.+|-..+ +.-.+... + .+ ..-.++.++..+++...
T Consensus 1309 ~~~ydlvia~~vl~~t~~~~~~l~~~~~lL~p~G~l~~~e~~~~~~~g~~~~~~~~~-~-r~-~~~~~~~~~w~~~l~~~ 1385 (2512)
T 2vz8_A 1309 LGKADLLVCNCALATLGDPAVAVGNMAATLKEGGFLLLHTLLAGHPLGEMVGFLTSP-E-QG-GRHLLSQDQWESLFAGA 1385 (2512)
T ss_dssp ---CCEEEEECC--------------------CCEEEEEEC-----------------------------CTTTTSSTTT
T ss_pred CCceeEEEEcccccccccHHHHHHHHHHhcCCCcEEEEEeccccccccccccccccc-c-cc-CCcccCHHHHHHHHHhC
Confidence 35699999888888778899999999999999999875321 10001110 0 00 01136667777778889
Q ss_pred CCEEEE
Q 015966 367 GFEFEK 372 (397)
Q Consensus 367 GFeii~ 372 (397)
||..+.
T Consensus 1386 gf~~~~ 1391 (2512)
T 2vz8_A 1386 SLHLVA 1391 (2512)
T ss_dssp TEEEEE
T ss_pred CCceee
Confidence 998765
|
| >2f1k_A Prephenate dehydrogenase; tyrosine synthesis, X-RA crystallography structure, oxidoreductase; HET: OMT NAP; 1.55A {Synechocystis SP} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=81.85 E-value=9.6 Score=34.87 Aligned_cols=34 Identities=24% Similarity=0.132 Sum_probs=27.0
Q ss_pred eEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHHH
Q 015966 192 ACLVPGAGL--GRLALEISHLGFISQGNEFSYYMMI 225 (397)
Q Consensus 192 rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ML~ 225 (397)
+|.++|+|. +.++..|++.|++|.+.|.+..-+.
T Consensus 2 ~i~iiG~G~~G~~~a~~l~~~g~~V~~~~~~~~~~~ 37 (279)
T 2f1k_A 2 KIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCE 37 (279)
T ss_dssp EEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred EEEEEcCcHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 689999875 3456777888999999999986653
|
| >3k96_A Glycerol-3-phosphate dehydrogenase [NAD(P)+]; GPSA, IDP01976, oxidoreductase, phospholipid biosynthesis; HET: EPE; 2.10A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=81.85 E-value=6.4 Score=38.53 Aligned_cols=101 Identities=13% Similarity=0.077 Sum_probs=60.7
Q ss_pred CCeEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 190 PPACLVPGAGL--GRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 190 ~~rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
..+|.++|+|. +.+|.-|++.|++|+..+.+..-+...+ . . ... ...+|++
T Consensus 29 ~mkI~VIGaG~mG~alA~~La~~G~~V~l~~r~~~~~~~i~---~-~---~~~--------------------~~~l~g~ 81 (356)
T 3k96_A 29 KHPIAILGAGSWGTALALVLARKGQKVRLWSYESDHVDEMQ---A-E---GVN--------------------NRYLPNY 81 (356)
T ss_dssp CSCEEEECCSHHHHHHHHHHHTTTCCEEEECSCHHHHHHHH---H-H---SSB--------------------TTTBTTC
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH---H-c---CCC--------------------cccCCCC
Confidence 46899999996 4578889999999999999976543221 1 0 000 0112222
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
. ...++... .|..+.. ...|+|+.+- ....+.+.++.|...|+|+-++|+
T Consensus 82 ~-----l~~~i~~t-~d~~ea~------~~aDvVilaV---p~~~~~~vl~~i~~~l~~~~ivvs 131 (356)
T 3k96_A 82 P-----FPETLKAY-CDLKASL------EGVTDILIVV---PSFAFHEVITRMKPLIDAKTRIAW 131 (356)
T ss_dssp C-----CCTTEEEE-SCHHHHH------TTCCEEEECC---CHHHHHHHHHHHGGGCCTTCEEEE
T ss_pred c-----cCCCeEEE-CCHHHHH------hcCCEEEECC---CHHHHHHHHHHHHHhcCCCCEEEE
Confidence 1 01122222 2433321 3458887542 234577888888889999888886
|
| >3qiv_A Short-chain dehydrogenase or 3-oxoacyl-[acyl-CARR protein] reductase; structural genomics; 2.25A {Mycobacterium avium subsp} | Back alignment and structure |
|---|
Probab=81.65 E-value=22 Score=31.66 Aligned_cols=37 Identities=16% Similarity=0.122 Sum_probs=29.5
Q ss_pred CCCeEEEecCCCC---hhHHHHHHcCCeEEEEeCCHHHHH
Q 015966 189 SPPACLVPGAGLG---RLALEISHLGFISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGCGlG---RLa~eLA~~Gf~V~GnD~S~~ML~ 225 (397)
++.+||+-|++.| .++..|+++|++|...+.+..-+.
T Consensus 8 ~~k~vlITGas~giG~~~a~~l~~~G~~V~~~~r~~~~~~ 47 (253)
T 3qiv_A 8 ENKVGIVTGSGGGIGQAYAEALAREGAAVVVADINAEAAE 47 (253)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEcCCHHHHH
Confidence 4678999997654 357888888999999999887654
|
| >3gpi_A NAD-dependent epimerase/dehydratase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.44A {Methylobacillus flagellatus KT} | Back alignment and structure |
|---|
Probab=81.32 E-value=5.2 Score=36.42 Aligned_cols=29 Identities=31% Similarity=0.429 Sum_probs=20.7
Q ss_pred CCeEEEecCCCChhHHHH----HHcCCeEEEEeCC
Q 015966 190 PPACLVPGAGLGRLALEI----SHLGFISQGNEFS 220 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eL----A~~Gf~V~GnD~S 220 (397)
..+||+.|+ |.++..| +++|++|.+++-+
T Consensus 3 ~~~ilVtGa--G~iG~~l~~~L~~~g~~V~~~~r~ 35 (286)
T 3gpi_A 3 LSKILIAGC--GDLGLELARRLTAQGHEVTGLRRS 35 (286)
T ss_dssp CCCEEEECC--SHHHHHHHHHHHHTTCCEEEEECT
T ss_pred CCcEEEECC--CHHHHHHHHHHHHCCCEEEEEeCC
Confidence 358999994 6665554 4569999888654
|
| >3o26_A Salutaridine reductase; short chain dehydrogenase/reductases, oxidoreductase; HET: NDP; 1.91A {Papaver somniferum} SCOP: c.2.1.0 | Back alignment and structure |
|---|
Probab=81.07 E-value=11 Score=34.47 Aligned_cols=37 Identities=14% Similarity=0.089 Sum_probs=28.2
Q ss_pred CCCeEEEecCCCC---hhHHHHHHcCCeEEEEeCCHHHHH
Q 015966 189 SPPACLVPGAGLG---RLALEISHLGFISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGCGlG---RLa~eLA~~Gf~V~GnD~S~~ML~ 225 (397)
++.+||+-|++.| .++..|+++|+.|.+.+-+..-+.
T Consensus 11 ~~k~vlITGas~GIG~~~a~~L~~~G~~V~~~~r~~~~~~ 50 (311)
T 3o26_A 11 KRRCAVVTGGNKGIGFEICKQLSSNGIMVVLTCRDVTKGH 50 (311)
T ss_dssp -CCEEEESSCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred CCcEEEEecCCchHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 4668999997644 357778888999999999876553
|
| >2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6 | Back alignment and structure |
|---|
Probab=80.75 E-value=11 Score=34.60 Aligned_cols=34 Identities=24% Similarity=0.409 Sum_probs=26.7
Q ss_pred eEEEecCCC--ChhHHHHHHcCC--eEEEEeCCHHHHH
Q 015966 192 ACLVPGAGL--GRLALEISHLGF--ISQGNEFSYYMMI 225 (397)
Q Consensus 192 rVLvPGCGl--GRLa~eLA~~Gf--~V~GnD~S~~ML~ 225 (397)
+|.++|+|. +.++.-|++.|+ +|.+.|-+..-+.
T Consensus 3 ~I~iIG~G~mG~~~a~~l~~~g~~~~V~~~d~~~~~~~ 40 (281)
T 2g5c_A 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESIS 40 (281)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHH
T ss_pred EEEEEecCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHH
Confidence 799999875 345677778899 9999999987653
|
| >4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A* | Back alignment and structure |
|---|
Probab=80.72 E-value=3.7 Score=38.95 Aligned_cols=40 Identities=18% Similarity=0.177 Sum_probs=30.6
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-c-CCeEEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAGL-GRLALEISH-L-GFISQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~-~-Gf~V~GnD~S~~ML~~s~ 228 (397)
++.+||+.|+|. |.++..+|+ + |..|.++|.|..=+..++
T Consensus 163 ~g~~VlV~GaG~~g~~a~~~a~~~~g~~Vi~~~~~~~r~~~~~ 205 (348)
T 4eez_A 163 PGDWQVIFGAGGLGNLAIQYAKNVFGAKVIAVDINQDKLNLAK 205 (348)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHH
T ss_pred CCCEEEEEcCCCccHHHHHHHHHhCCCEEEEEECcHHHhhhhh
Confidence 678999999986 456666665 3 789999999987665443
|
| >1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=80.18 E-value=1.9 Score=41.44 Aligned_cols=32 Identities=16% Similarity=0.169 Sum_probs=23.7
Q ss_pred CCCeEEEecCCCChhHHHHHH----cCCeEEEEeCCHH
Q 015966 189 SPPACLVPGAGLGRLALEISH----LGFISQGNEFSYY 222 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~----~Gf~V~GnD~S~~ 222 (397)
.+.+|.++| +|+++..+|+ .|++|.+.|-+..
T Consensus 141 ~g~~vgIiG--~G~IG~~~A~~l~~~G~~V~~~d~~~~ 176 (307)
T 1wwk_A 141 EGKTIGIIG--FGRIGYQVAKIANALGMNILLYDPYPN 176 (307)
T ss_dssp TTCEEEEEC--CSHHHHHHHHHHHHTTCEEEEECSSCC
T ss_pred CCceEEEEc--cCHHHHHHHHHHHHCCCEEEEECCCCC
Confidence 567899986 4666666654 4999999998763
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 397 | ||||
| d2g72a1 | 263 | c.66.1.15 (A:18-280) Phenylethanolamine N-methyltr | 4e-12 |
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} Length = 263 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Score = 63.7 bits (154), Expect = 4e-12
Identities = 29/234 (12%), Positives = 62/234 (26%), Gaps = 17/234 (7%)
Query: 162 EGKTERDQCYKPI-LEELDALFPNRSKESPPACLVPGAGLGRL-ALEISHLGFISQGNEF 219
G P L L F + G+G L +F
Sbjct: 27 RGDLCNPNGVGPWKLRCLAQTFATGEVS-GRTLIDIGSGPTVYQLLSACSHFEDITMTDF 85
Query: 220 SYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFS 279
L A W++Y + + + + +
Sbjct: 86 LEVNRQELGRWLQEEPGAFNWSMY---SQHACLIEGKGECWQDKERQLRARVKRVLPIDV 142
Query: 280 MCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVE----YIEIISRILKDGGVWINLGP 335
+ DA+V+ F ++ + ++ I+ +L+ GG + +G
Sbjct: 143 HQPQPL---GAGSPAPLPADALVSAFCLEAVSPDLASFQRALDHITTLLRPGGHLLLIGA 199
Query: 336 LLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQ 389
L + G+ + +S E+V+ + G++ + T
Sbjct: 200 LEESWYL-AGEARLTVVPVSEEEVREALVRSGYKVRD---LRTYIMPAHLQTGV 249
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 397 | |||
| d1pjza_ | 201 | Thiopurine S-methyltransferase {Pseudomonas syring | 99.79 | |
| d1y8ca_ | 246 | Putative methyltransferase CAC2371 {Clostridium ac | 99.79 | |
| d2bzga1 | 229 | Thiopurine S-methyltransferase {Human (Homo sapien | 99.79 | |
| d1ve3a1 | 226 | Hypothetical protein PH0226 {Archaeon Pyrococcus h | 99.75 | |
| d1vl5a_ | 231 | Hypothetical protein BH2331 {Bacillus halodurans [ | 99.74 | |
| d1xxla_ | 234 | Hypothetical protein YcgJ {Bacillus subtilis [TaxI | 99.73 | |
| d1wzna1 | 251 | Hypothetical methyltransferase PH1305 {Archaeon Py | 99.73 | |
| d2ex4a1 | 222 | Adrenal gland protein AD-003 (C9orf32) {Human (Hom | 99.71 | |
| d2p7ia1 | 225 | Hypothetical protein ECA1738 {Erwinia carotovora [ | 99.7 | |
| d2o57a1 | 282 | Putative sarcosine dimethylglycine methyltransfera | 99.7 | |
| d1im8a_ | 225 | Hypothetical protein HI0319 (YecO) {Haemophilus in | 99.7 | |
| d2a14a1 | 257 | Indolethylamine N-methyltransferase, INMT {Human ( | 99.69 | |
| d1vlma_ | 208 | Possible histamine N-methyltransferase TM1293 {The | 99.69 | |
| d2g72a1 | 263 | Phenylethanolamine N-methyltransferase, PNMTase {H | 99.68 | |
| d1nkva_ | 245 | Hypothetical Protein YjhP {Escherichia coli [TaxId | 99.67 | |
| d2avna1 | 246 | Hypothetical methyltransferase TM1389 {Thermotoga | 99.67 | |
| d2i6ga1 | 198 | Putative methyltransferase TehB {Salmonella typhim | 99.66 | |
| d1ri5a_ | 252 | mRNA cap (Guanine N-7) methyltransferase {Fungus ( | 99.66 | |
| d1xtpa_ | 254 | Hypothetical protein Lmaj004091aaa (LmjF30.0810) { | 99.65 | |
| d2nxca1 | 254 | PrmA-like protein TTHA0656 (TT0836) {Thermus therm | 99.6 | |
| d1xvaa_ | 292 | Glycine N-methyltransferase {Rat (Rattus norvegicu | 99.59 | |
| d2gh1a1 | 281 | Methyltransferase BC2162 {Bacillus cereus [TaxId: | 99.58 | |
| d2fk8a1 | 280 | Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri | 99.57 | |
| d1tw3a2 | 253 | Carminomycin 4-O-methyltransferase {Streptomyces p | 99.55 | |
| d1g8sa_ | 230 | Fibrillarin homologue {Archaeon Methanococcus jann | 99.53 | |
| d1kpga_ | 285 | CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.52 | |
| d1kpia_ | 291 | CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | 99.5 | |
| d1jqea_ | 280 | Histamine methyltransferase {Human (Homo sapiens) | 99.45 | |
| d1qzza2 | 256 | Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu | 99.43 | |
| d1zx0a1 | 229 | Guanidinoacetate methyltransferase {Human (Homo sa | 99.43 | |
| d1p91a_ | 268 | rRNA methyltransferase RlmA {Escherichia coli [Tax | 99.42 | |
| d1l3ia_ | 186 | Precorrin-6Y methyltransferase (CbiT) {Archaeon Me | 99.39 | |
| d1dusa_ | 194 | Hypothetical protein MJ0882 {Archaeon Methanococcu | 99.39 | |
| d2fyta1 | 311 | Protein arginine N-methyltransferase 3, PRMT3 {Hum | 99.32 | |
| d1oria_ | 316 | Protein arginine N-methyltransferase 1, PRMT1 {Rat | 99.31 | |
| d1g6q1_ | 328 | Arginine methyltransferase, HMT1 {Baker's yeast (S | 99.29 | |
| d1nt2a_ | 209 | Fibrillarin homologue {Archaeon Archaeoglobus fulg | 99.25 | |
| d1o54a_ | 266 | Hypothetical protein TM0748 {Thermotoga maritima [ | 99.24 | |
| d1yb2a1 | 250 | Hypothetical protein Ta0852 {Thermoplasma acidophi | 99.23 | |
| d1g8aa_ | 227 | Fibrillarin homologue {Archaeon Pyrococcus horikos | 99.13 | |
| d1i9ga_ | 264 | Probable methyltransferase Rv2118c {Mycobacterium | 99.1 | |
| d1nw3a_ | 328 | Catalytic, N-terminal domain of histone methyltran | 99.09 | |
| d1dl5a1 | 213 | Protein-L-isoaspartyl O-methyltransferase {Thermot | 99.09 | |
| d2fcaa1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacil | 99.06 | |
| d1i1na_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Human ( | 99.05 | |
| d2b25a1 | 324 | Hypothetical protein FLJ20628 {Human (Homo sapiens | 99.01 | |
| d2frna1 | 260 | Hypothetical protein PH0793 {Pyrococcus horikoshii | 98.99 | |
| d1vbfa_ | 224 | Protein-L-isoaspartyl O-methyltransferase {Sulfolo | 98.98 | |
| d1yzha1 | 204 | tRNA (guanine-N(7)-)-methyltransferase TrmB {Strep | 98.97 | |
| d2b3ta1 | 274 | N5-glutamine methyltransferase, HemK {Escherichia | 98.91 | |
| d1u2za_ | 406 | Catalytic, N-terminal domain of histone methyltran | 98.88 | |
| d2esra1 | 152 | Putative methyltransferase SPy1538 {Streptococcus | 98.83 | |
| d2as0a2 | 324 | Hypothetical protein PH1915, middle and C-terminal | 98.82 | |
| d1ws6a1 | 171 | Methyltransferase TTHA0928 {Thermus thermophilus [ | 98.79 | |
| d1r18a_ | 223 | Protein-L-isoaspartyl O-methyltransferase {Fruit f | 98.74 | |
| d1wxxa2 | 318 | Hypothetical protein TTHA1280, middle and C-termin | 98.73 | |
| d1wy7a1 | 201 | Hypothetical protein PH1948 {Archaeon Pyrococcus h | 98.71 | |
| d1fp1d2 | 244 | Chalcone O-methyltransferase {Alfalfa (Medicago sa | 98.68 | |
| d1jg1a_ | 215 | Protein-L-isoaspartyl O-methyltransferase {Archaeo | 98.66 | |
| d1ne2a_ | 197 | Hypothetical protein Ta1320 {Archaeon Thermoplasma | 98.66 | |
| d1af7a2 | 193 | Chemotaxis receptor methyltransferase CheR, C-term | 98.63 | |
| d2cl5a1 | 214 | Catechol O-methyltransferase, COMT {Rat (Rattus no | 98.58 | |
| d1kyza2 | 243 | Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra | 98.57 | |
| d2fpoa1 | 183 | Methylase YhhF {Escherichia coli [TaxId: 562]} | 98.5 | |
| d1fp2a2 | 244 | Isoflavone O-methyltransferase {Alfalfa (Medicago | 98.48 | |
| d2h00a1 | 250 | Methyltransferase 10 domain containing protein MET | 98.45 | |
| d2avda1 | 219 | COMT domain-containing protein 1, COMTD1 {Human (H | 98.44 | |
| d2fhpa1 | 182 | Putative methylase EF2452 {Enterococcus faecalis [ | 98.36 | |
| d1m6ya2 | 192 | TM0872, methyltransferase domain {Thermotoga marit | 98.35 | |
| d2b78a2 | 317 | Hypothetical protein SMu776, middle and C-terminal | 98.33 | |
| d2igta1 | 309 | Putative methyltransferase Atu0340 {Agrobacterium | 98.31 | |
| d2ih2a1 | 223 | DNA methylase TaqI, N-terminal domain {Thermus aqu | 98.23 | |
| d1mjfa_ | 276 | Putative spermidine synthetase PF0127 (SpeE) {Arch | 98.21 | |
| d2f8la1 | 328 | Hypothetical protein Lmo1582 {Listeria monocytogen | 98.2 | |
| d1susa1 | 227 | Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicag | 98.17 | |
| d1uira_ | 312 | Spermidine synthase {Thermus thermophilus [TaxId: | 98.14 | |
| d1nv8a_ | 271 | N5-glutamine methyltransferase, HemK {Thermotoga m | 98.12 | |
| d2o07a1 | 285 | Spermidine synthase {Human (Homo sapiens) [TaxId: | 98.02 | |
| d1inla_ | 295 | Spermidine synthase {Thermotoga maritima [TaxId: 2 | 98.0 | |
| d2b2ca1 | 312 | Spermidine synthase {Caenorhabditis elegans [TaxId | 97.98 | |
| d2okca1 | 425 | Type I restriction enzyme StySJI M protein {Bacter | 97.96 | |
| d1xj5a_ | 290 | Spermidine synthase {Thale cress (Arabidopsis thal | 97.94 | |
| d1qama_ | 235 | rRNA adenine dimethylase {Bacillus subtilis, Ermc' | 97.85 | |
| d2ifta1 | 183 | Putative methylase HI0767 {Haemophilus influenzae | 97.84 | |
| d1iy9a_ | 274 | Spermidine synthase {Bacillus subtilis [TaxId: 142 | 97.8 | |
| d1yuba_ | 245 | rRNA adenine dimethylase {Streptococcus pneumoniae | 97.76 | |
| d1uwva2 | 358 | rRNA (Uracil-5-)-methyltransferase RumA, catalytic | 97.53 | |
| d1wg8a2 | 182 | TM0872, methyltransferase domain {Thermus thermoph | 97.44 | |
| d1zq9a1 | 278 | Probable dimethyladenosine transferase {Human (Hom | 97.28 | |
| d2ar0a1 | 524 | M.EcoKI {Escherichia coli [TaxId: 562]} | 97.17 | |
| d1xdza_ | 239 | Glucose-inhibited division protein B (GidB) {Bacil | 97.05 | |
| d1qyra_ | 252 | High level kasugamycin resistance protein KsgA {Es | 97.0 | |
| d2oyra1 | 250 | Hypothetical protein YhiQ {Shigella flexneri [TaxI | 96.95 | |
| d1jsxa_ | 207 | Glucose-inhibited division protein B (GidB) {Esche | 96.81 | |
| d1yb5a2 | 174 | Quinone oxidoreductase {Human (Homo sapiens) [TaxI | 96.7 | |
| d1piwa2 | 168 | Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas | 96.57 | |
| d1ej0a_ | 180 | RNA methyltransferase FtsJ {Escherichia coli [TaxI | 96.3 | |
| d1e3ja2 | 170 | Ketose reductase (sorbitol dehydrogenase) {Silverl | 96.02 | |
| d1vj0a2 | 182 | Hypothetical protein TM0436 {Thermotoga maritima [ | 95.85 | |
| d2bm8a1 | 232 | Cephalosporin hydroxylase CmcI {Streptomyces clavu | 95.71 | |
| d2p41a1 | 257 | An RNA cap (nucleoside-2'-O-)-methyltransferase do | 95.25 | |
| d1pqwa_ | 183 | Putative enoyl reductase domain of polyketide synt | 95.21 | |
| d2dula1 | 375 | N(2),N(2)-dimethylguanosine tRNA methyltransferase | 95.19 | |
| d1jqba2 | 174 | Bacterial secondary alcohol dehydrogenase {Clostri | 95.02 | |
| d2iida1 | 370 | L-aminoacid oxidase {Malayan pit viper (Calloselas | 94.46 | |
| d1qora2 | 179 | Quinone oxidoreductase {Escherichia coli [TaxId: 5 | 94.41 | |
| d1llua2 | 166 | Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.38 | |
| d2dw4a2 | 449 | Lysine-specific histone demethylase 1, LSD1 {Human | 94.26 | |
| d2f1ka2 | 165 | Prephenate dehydrogenase TyrA {Synechocystis sp. p | 94.25 | |
| d1iz0a2 | 171 | Quinone oxidoreductase {Thermus thermophilus [TaxI | 94.09 | |
| d1xa0a2 | 176 | B. subtilis YhfP homologue {Bacillus stearothermop | 94.09 | |
| d1ixka_ | 313 | Hypothetical methyltransferase PH1374 {Archaeon Py | 93.94 | |
| d1v3va2 | 182 | Leukotriene b4 12-hydroxydehydrogenase/prostagland | 93.84 | |
| d2c7pa1 | 327 | DNA methylase HhaI {Haemophilus haemolyticus [TaxI | 93.81 | |
| d1pl8a2 | 171 | Ketose reductase (sorbitol dehydrogenase) {Human ( | 93.13 | |
| d1seza1 | 373 | Protoporphyrinogen oxidase {Tobacco (Nicotiana tab | 92.72 | |
| d1kola2 | 195 | Formaldehyde dehydrogenase {Pseudomonas putida [Ta | 92.63 | |
| d1uufa2 | 168 | Hypothetical protein YahK {Escherichia coli [TaxId | 92.43 | |
| d1sqga2 | 284 | Ribosomal RNA small subunit methyltransferase B, R | 92.25 | |
| d2g5ca2 | 171 | Prephenate dehydrogenase TyrA {Aquifex aeolicus [T | 92.22 | |
| d2bcgg1 | 297 | Guanine nucleotide dissociation inhibitor, GDI {Ba | 91.89 | |
| d1dcta_ | 324 | DNA methylase HaeIII {Haemophilus aegyptius [TaxId | 91.82 | |
| d1jvba2 | 170 | Alcohol dehydrogenase {Archaeon Sulfolobus solfata | 91.75 | |
| d1g55a_ | 343 | DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | 91.75 | |
| d1o89a2 | 177 | Hypothetical protein YhdH {Escherichia coli [TaxId | 91.49 | |
| d1tt7a2 | 167 | Hypothetical protein YhfP {Bacillus subtilis [TaxI | 90.94 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 90.94 | |
| d1e3ia2 | 174 | Alcohol dehydrogenase {Mouse (Mus musculus), class | 90.46 | |
| d2ivda1 | 347 | Protoporphyrinogen oxidase {Myxococcus xanthus [Ta | 90.07 | |
| d1booa_ | 320 | m.PvuII N4 cytosine-specific DNA methyltransferase | 90.04 | |
| d1b5qa1 | 347 | Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | 89.88 | |
| d1ae1a_ | 258 | Tropinone reductase {Jimsonweed (Datura stramonium | 89.68 | |
| d2bi7a1 | 314 | UDP-galactopyranose mutase, N-terminal domain {Kle | 89.59 | |
| d1m6ex_ | 359 | Salicylic acid carboxyl methyltransferase (SAMT) { | 89.39 | |
| d1f8fa2 | 174 | Benzyl alcohol dehydrogenase {Acinetobacter calcoa | 89.18 | |
| d1c0pa1 | 268 | D-aminoacid oxidase, N-terminal domain {Rhodotorul | 89.12 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 88.78 | |
| d1vj1a2 | 187 | Putative zinc-binding alcohol dehydrogenase {Mouse | 88.71 | |
| d1g60a_ | 256 | Methyltransferase mboII {Moraxella bovis [TaxId: 4 | 88.54 | |
| d1rjwa2 | 168 | Alcohol dehydrogenase {Bacillus stearothermophilus | 88.4 | |
| d1ps9a3 | 179 | 2,4-dienoyl-CoA reductase, middle domain {Escheric | 88.33 | |
| d2b9ea1 | 293 | NOL1R {Human (Homo sapiens) [TaxId: 9606]} | 88.2 | |
| d1i4wa_ | 322 | Transcription factor sc-mtTFB {Baker's yeast (Sacc | 87.76 | |
| d1d5ta1 | 336 | Guanine nucleotide dissociation inhibitor, GDI {Co | 86.81 | |
| d1bg6a2 | 184 | N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {A | 86.01 | |
| d1eg2a_ | 279 | m.RsrI N6 adenosine-specific DNA methyltransferase | 85.82 | |
| d1h2ba2 | 172 | Alcohol dehydrogenase {Archaeon Aeropyrum pernix [ | 85.51 | |
| d2v5za1 | 383 | Monoamine oxidase B {Human (Homo sapiens) [TaxId: | 84.85 | |
| d1nffa_ | 244 | Putative oxidoreductase Rv2002 {Mycobacterium tube | 83.6 | |
| d1vpda2 | 161 | Hydroxyisobutyrate dehydrogenase {Salmonella typhi | 83.39 | |
| d2pv7a2 | 152 | Prephenate dehydrogenase TyrA {Haemophilus influen | 83.31 | |
| d1pjqa1 | 113 | Siroheme synthase CysG, domain 1 {Salmonella typhi | 82.96 | |
| d2voua1 | 265 | Dihydroxypyridine hydroxylase DhpH {Arthrobacter n | 82.22 | |
| d1p3da1 | 96 | UDP-N-acetylmuramate-alanine ligase MurC {Haemophi | 82.15 | |
| d1p0fa2 | 174 | Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: | 81.73 | |
| d1djqa3 | 233 | Trimethylamine dehydrogenase, middle domain {Methy | 80.99 | |
| d1pjca1 | 168 | L-alanine dehydrogenase {Phormidium lapideum [TaxI | 80.29 |
| >d1pjza_ c.66.1.36 (A:) Thiopurine S-methyltransferase {Pseudomonas syringae [TaxId: 317]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Pseudomonas syringae [TaxId: 317]
Probab=99.79 E-value=2.1e-19 Score=155.57 Aligned_cols=163 Identities=15% Similarity=0.106 Sum_probs=107.9
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
+.+.+++..+-+ .++.||||||||+||++..||++||+|+|+|+|..|+..|+...+.... ....
T Consensus 7 ~~~~~~~~~l~~----~~~~rvLd~GCG~G~~a~~la~~G~~V~gvD~S~~~i~~a~~~~~~~~~--~~~~--------- 71 (201)
T d1pjza_ 7 KDLQQYWSSLNV----VPGARVLVPLCGKSQDMSWLSGQGYHVVGAELSEAAVERYFTERGEQPH--ITSQ--------- 71 (201)
T ss_dssp HHHHHHHHHHCC----CTTCEEEETTTCCSHHHHHHHHHCCEEEEEEECHHHHHHHHHHHCSCSE--EEEE---------
T ss_pred HHHHHHHHHcCC----CCCCEEEEecCcCCHHHHHHHHcCCceEeecccHHHHHHHHHHhccccc--hhhh---------
Confidence 445555555422 3678999999999999999999999999999999999988744321100 0000
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCCcE
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGV 329 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPGG~ 329 (397)
..... .......+..+|+.++.. .....||+|++.+.+. ...+...+++.|+++|||||+
T Consensus 72 --------~~~~~--------~~~~~~~~~~~d~~~l~~--~~~~~~D~i~~~~~l~~l~~~~~~~~~~~i~~~LkpgG~ 133 (201)
T d1pjza_ 72 --------GDFKV--------YAAPGIEIWCGDFFALTA--RDIGHCAAFYDRAAMIALPADMRERYVQHLEALMPQACS 133 (201)
T ss_dssp --------TTEEE--------EECSSSEEEEECCSSSTH--HHHHSEEEEEEESCGGGSCHHHHHHHHHHHHHHSCSEEE
T ss_pred --------hhhhh--------ccccccceeccccccccc--ccccceeEEEEEeeeEecchhhhHHHHHHHHHhcCCCcE
Confidence 00000 001236789999988643 2346899999876433 224577899999999999998
Q ss_pred EEEecCCcchhhh-ccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 330 WINLGPLLYHFAD-LYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 330 wIN~GPLlYh~~d-~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
++-.. +.+.. ..++ ..+.++.+|+++++. .+|++...+
T Consensus 134 l~l~~---~~~~~~~~~~---p~~~~~~~el~~l~~-~~~~i~~~~ 172 (201)
T d1pjza_ 134 GLLIT---LEYDQALLEG---PPFSVPQTWLHRVMS-GNWEVTKVG 172 (201)
T ss_dssp EEEEE---ESSCSSSSSS---CCCCCCHHHHHHTSC-SSEEEEEEE
T ss_pred EEEEE---cccccccCCC---ccccCCHHHHHHHhC-CCcEEEEEE
Confidence 87321 11111 1111 135689999999885 589886533
|
| >d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Putative methyltransferase CAC2371 species: Clostridium acetobutylicum [TaxId: 1488]
Probab=99.79 E-value=7e-19 Score=161.02 Aligned_cols=99 Identities=18% Similarity=0.237 Sum_probs=81.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+||++..||++|++|+|+|+|..||..|+-.....
T Consensus 37 ~~~~vLDiGCG~G~~~~~l~~~g~~v~GvD~S~~ml~~A~~~~~~~---------------------------------- 82 (246)
T d1y8ca_ 37 VFDDYLDLACGTGNLTENLCPKFKNTWAVDLSQEMLSEAENKFRSQ---------------------------------- 82 (246)
T ss_dssp CTTEEEEETCTTSTTHHHHGGGSSEEEEECSCHHHHHHHHHHHHHT----------------------------------
T ss_pred CCCeEEEEeCcCCHHHHHHHHhCCccEeeccchhhhhhcccccccc----------------------------------
Confidence 4568999999999999999999999999999999998776322100
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEee----ccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF----FIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F----FIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
+.++.++.+|+.++.. .++||+|++.+ ++.+..++..+|+.++++|||||++|
T Consensus 83 ------~~~v~~~~~d~~~~~~----~~~fD~i~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~~i 139 (246)
T d1y8ca_ 83 ------GLKPRLACQDISNLNI----NRKFDLITCCLDSTNYIIDSDDLKKYFKAVSNHLKEGGVFI 139 (246)
T ss_dssp ------TCCCEEECCCGGGCCC----SCCEEEEEECTTGGGGCCSHHHHHHHHHHHHTTEEEEEEEE
T ss_pred ------Cccceeeccchhhhcc----cccccccceeeeeeeccCCHHHHHHHHHHHHHhCCCCeEEE
Confidence 0126789999988632 47899998753 57777889999999999999999998
|
| >d2bzga1 c.66.1.36 (A:17-245) Thiopurine S-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Thiopurine S-methyltransferase domain: Thiopurine S-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=7.8e-19 Score=160.33 Aligned_cols=171 Identities=11% Similarity=0.025 Sum_probs=113.9
Q ss_pred hchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccc
Q 015966 169 QCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 248 (397)
Q Consensus 169 ~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~ 248 (397)
...+.+++.+.+.++. .++.||||||||+||++..||++||+|+|+|+|..|+..++-..... |-...
T Consensus 28 ~~~~~l~~~~~~~l~~---~~~~rvLd~GCG~G~~a~~LA~~G~~V~gvD~S~~ai~~a~~~~~~~---------~~~~~ 95 (229)
T d2bzga1 28 QGHQLLKKHLDTFLKG---KSGLRVFFPLCGKAVEMKWFADRGHSVVGVEISELGIQEFFTEQNLS---------YSEEP 95 (229)
T ss_dssp TCCHHHHHHHHHHHTT---CCSCEEEETTCTTCTHHHHHHHTTCEEEEECSCHHHHHHHHHHTTCC---------EEEEE
T ss_pred CCCHHHHHHHHHhcCC---CCCCEEEEeCCCCcHHHHHHHhCCCcEEEEeCCHHHHHHHHHHhhcc---------ccccc
Confidence 3455677888776542 25679999999999999999999999999999999997665221110 00000
Q ss_pred ccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccC
Q 015966 249 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKD 326 (397)
Q Consensus 249 ~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKP 326 (397)
. ..++.... ......++.++.+|+.++.. ...+.||+|+.+.++. .......|++.++++|||
T Consensus 96 ~------------~~~~~~~~-~~~~~~~v~~~~~d~~~l~~--~~~~~fd~i~~~~~l~~~~~~~r~~~~~~~~~~Lkp 160 (229)
T d2bzga1 96 I------------TEIPGTKV-FKSSSGNISLYCCSIFDLPR--TNIGKFDMIWDRGALVAINPGDRKCYADTMFSLLGK 160 (229)
T ss_dssp C------------TTSTTCEE-EEETTSSEEEEESCGGGGGG--SCCCCEEEEEESSSTTTSCGGGHHHHHHHHHHTEEE
T ss_pred h------------hcccccce-eeecCCcEEEEEcchhhccc--cccCceeEEEEEEEEEeccchhhHHHHHHHHhhcCC
Confidence 0 00000000 00112358999999988743 3468999999775433 335688999999999999
Q ss_pred CcEEEEecCCcchhhh-ccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 327 GGVWINLGPLLYHFAD-LYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 327 GG~wIN~GPLlYh~~d-~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
||+++-.. +.+.. ..+++ ++.+|.+||++++.. +|++...
T Consensus 161 gG~~~l~~---~~~~~~~~~gp---p~~~~~~el~~lf~~-~~~i~~l 201 (229)
T d2bzga1 161 KFQYLLCV---LSYDPTKHPGP---PFYVPHAEIERLFGK-ICNIRCL 201 (229)
T ss_dssp EEEEEEEE---EECCTTTCCCS---SCCCCHHHHHHHHTT-TEEEEEE
T ss_pred cceEEEEE---cccCCCCCCCC---CCCCCHHHHHHHhcC-CCEEEEE
Confidence 99877422 12211 11112 467899999999976 7988653
|
| >d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical protein PH0226 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.75 E-value=3e-18 Score=152.17 Aligned_cols=126 Identities=16% Similarity=0.165 Sum_probs=96.4
Q ss_pred cccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhccccc
Q 015966 158 DWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETA 237 (397)
Q Consensus 158 DWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~ 237 (397)
+|.+.+..+.+..+..+...|++.++ ++.+|||+|||+|+++..||+.|+.|+|+|+|..|+..|+..+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~l~-----~~~~ILDiGcG~G~~~~~la~~~~~v~giD~S~~~i~~ak~~~~~~--- 82 (226)
T d1ve3a1 11 TYTDINSQEYRSRIETLEPLLMKYMK-----KRGKVLDLACGVGGFSFLLEDYGFEVVGVDISEDMIRKAREYAKSR--- 82 (226)
T ss_dssp TTTCTTSHHHHHHHHHHHHHHHHSCC-----SCCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT---
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhcC-----CCCEEEEECCCcchhhhhHhhhhcccccccccccchhhhhhhhccc---
Confidence 45566666666656666667777665 4579999999999999999999999999999999998877433110
Q ss_pred CccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHH
Q 015966 238 GEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVE 315 (397)
Q Consensus 238 ~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~ 315 (397)
+ ..+.++.+|+.++. ..+++||+|++.+.+. +..++..
T Consensus 83 ~-------------------------------------~~~~~~~~d~~~l~---~~~~~fD~I~~~~~l~~~~~~d~~~ 122 (226)
T d1ve3a1 83 E-------------------------------------SNVEFIVGDARKLS---FEDKTFDYVIFIDSIVHFEPLELNQ 122 (226)
T ss_dssp T-------------------------------------CCCEEEECCTTSCC---SCTTCEEEEEEESCGGGCCHHHHHH
T ss_pred c-------------------------------------cccccccccccccc---ccCcCceEEEEecchhhCChhHHHH
Confidence 0 11456778887753 3468999999886443 3357889
Q ss_pred HHHHHHHhccCCcEEE
Q 015966 316 YIEIISRILKDGGVWI 331 (397)
Q Consensus 316 yi~~I~~~LKPGG~wI 331 (397)
+|+.|+++|||||++|
T Consensus 123 ~l~~i~~~LkpgG~li 138 (226)
T d1ve3a1 123 VFKEVRRVLKPSGKFI 138 (226)
T ss_dssp HHHHHHHHEEEEEEEE
T ss_pred HHHHHHHHcCcCcEEE
Confidence 9999999999999987
|
| >d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein BH2331 species: Bacillus halodurans [TaxId: 86665]
Probab=99.74 E-value=5.9e-18 Score=151.97 Aligned_cols=144 Identities=14% Similarity=0.165 Sum_probs=104.5
Q ss_pred CCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 188 ESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 188 ~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
+++.+|||+|||+|.++..||++|.+|+|+|+|..|+..|+-.+... .
T Consensus 14 ~~~~rVLDiGcG~G~~~~~l~~~~~~v~gvD~s~~~i~~A~~~~~~~----------------------------~---- 61 (231)
T d1vl5a_ 14 KGNEEVLDVATGGGHVANAFAPFVKKVVAFDLTEDILKVARAFIEGN----------------------------G---- 61 (231)
T ss_dssp CSCCEEEEETCTTCHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHT----------------------------T----
T ss_pred CCcCEEEEecccCcHHHHHHHHhCCEEEEEECCHHHHhhhhhccccc----------------------------c----
Confidence 36789999999999999999999999999999999998776332110 0
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe---cCC------cc
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL---GPL------LY 338 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~---GPL------lY 338 (397)
..++.++.+|+.++- ..+++||+|++...+.-.++....++.++++|||||++|-. -|- +|
T Consensus 62 -------~~~i~~~~~d~~~l~---~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~l~i~~~~~~~~~~~~~~~ 131 (231)
T d1vl5a_ 62 -------HQQVEYVQGDAEQMP---FTDERFHIVTCRIAAHHFPNPASFVSEAYRVLKKGGQLLLVDNSAPENDAFDVFY 131 (231)
T ss_dssp -------CCSEEEEECCC-CCC---SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEEEEBCSSHHHHHHH
T ss_pred -------ccccccccccccccc---ccccccccccccccccccCCHHHHHHHHHHhcCCCcEEEEEeCCCCCCHHHHHHH
Confidence 023788999988752 34689999998876655566789999999999999988842 111 11
Q ss_pred hhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 339 HFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 339 h~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
++-.... .......++.+++.++++++||++++.+
T Consensus 132 ~~~~~~~-~~~~~~~~~~~~~~~~l~~aGf~~~~~~ 166 (231)
T d1vl5a_ 132 NYVEKER-DYSHHRAWKKSDWLKMLEEAGFELEELH 166 (231)
T ss_dssp HHHHHHH-CTTCCCCCBHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHhhc-ccCcccCCCHHHHHHHHHHCCCEEEEEE
Confidence 1110000 1111235789999999999999988744
|
| >d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein YcgJ species: Bacillus subtilis [TaxId: 1423]
Probab=99.73 E-value=8.9e-18 Score=152.74 Aligned_cols=154 Identities=16% Similarity=0.165 Sum_probs=109.5
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCC
Q 015966 175 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLS 254 (397)
Q Consensus 175 l~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s 254 (397)
++.|.+..+ .+++.||||+|||+|.++..||++|++|+|+|+|..||..|+-.+...
T Consensus 5 ~~~l~~~~~---~~~~~rILDiGcGtG~~~~~la~~~~~v~gvD~S~~~l~~A~~~~~~~-------------------- 61 (234)
T d1xxla_ 5 LGLMIKTAE---CRAEHRVLDIGAGAGHTALAFSPYVQECIGVDATKEMVEVASSFAQEK-------------------- 61 (234)
T ss_dssp HHHHHHHHT---CCTTCEEEEESCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHHH--------------------
T ss_pred HHHHHHHhC---CCCCCEEEEeCCcCcHHHHHHHHhCCeEEEEeCChhhhhhhhhhhccc--------------------
Confidence 344545444 247889999999999999999999999999999999998876332110
Q ss_pred cccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe-
Q 015966 255 DSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL- 333 (397)
Q Consensus 255 ~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~- 333 (397)
. ..++.++.+|..++. ..+++||+|++++-+.-.+|...+|+.++++|||||+++-.
T Consensus 62 ------~-------------~~~~~~~~~d~~~~~---~~~~~fD~v~~~~~l~~~~d~~~~l~~~~r~LkpgG~~~~~~ 119 (234)
T d1xxla_ 62 ------G-------------VENVRFQQGTAESLP---FPDDSFDIITCRYAAHHFSDVRKAVREVARVLKQDGRFLLVD 119 (234)
T ss_dssp ------T-------------CCSEEEEECBTTBCC---SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEEEEE
T ss_pred ------c-------------ccccccccccccccc---ccccccceeeeeceeecccCHHHHHHHHHHeeCCCcEEEEEE
Confidence 0 013778999987752 34689999998876665567889999999999999998842
Q ss_pred -c----CCcchhhhccC--CCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 334 -G----PLLYHFADLYG--QEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 334 -G----PLlYh~~d~~g--~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
+ |.+..+.+... ..+.....++.+++..++++.||+++..
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gf~~~~~ 166 (234)
T d1xxla_ 120 HYAPEDPVLDEFVNHLNRLRDPSHVRESSLSEWQAMFSANQLAYQDI 166 (234)
T ss_dssp ECBCSSHHHHHHHHHHHHHHCTTCCCCCBHHHHHHHHHHTTEEEEEE
T ss_pred cCCCCCHHHHHHHHHHHhhCCCcccccCCHHHHHHHHHHCCCceeEE
Confidence 1 11111111000 0111223468999999999999988763
|
| >d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CAC2371-like domain: Hypothetical methyltransferase PH1305 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.73 E-value=1e-17 Score=152.16 Aligned_cols=100 Identities=21% Similarity=0.298 Sum_probs=80.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
+..+|||+|||+|+++..||++|++|+|+|+|..|+..|+..++..
T Consensus 41 ~~~~iLDiGcGtG~~~~~l~~~~~~v~gvD~s~~mi~~a~~~~~~~---------------------------------- 86 (251)
T d1wzna1 41 EVRRVLDLACGTGIPTLELAERGYEVVGLDLHEEMLRVARRKAKER---------------------------------- 86 (251)
T ss_dssp CCCEEEEETCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT----------------------------------
T ss_pred CCCEEEEeCCCCCccchhhcccceEEEEEeeccccccccccccccc----------------------------------
Confidence 5679999999999999999999999999999999998877432100
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEee---ccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
+.++.+.++|+.++-. .++||+|++.+ ..-+.+++...|+.++++|||||++|-
T Consensus 87 ------~~~i~~~~~d~~~l~~----~~~fD~I~~~~~~~~~~~~~~~~~~L~~~~~~LkpgG~lii 143 (251)
T d1wzna1 87 ------NLKIEFLQGDVLEIAF----KNEFDAVTMFFSTIMYFDEEDLRKLFSKVAEALKPGGVFIT 143 (251)
T ss_dssp ------TCCCEEEESCGGGCCC----CSCEEEEEECSSGGGGSCHHHHHHHHHHHHHHEEEEEEEEE
T ss_pred ------cccchheehhhhhccc----ccccchHhhhhhhhhcCChHHHHHHHHHHHHHcCCCcEEEE
Confidence 0126789999988732 36899998764 223456889999999999999999984
|
| >d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Adrenal gland protein AD-003 (C9orf32) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.71 E-value=4e-17 Score=147.73 Aligned_cols=139 Identities=14% Similarity=0.199 Sum_probs=102.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|+++..|+++++ .|+|+|+|..||..|+-.+... .
T Consensus 60 ~~~~vLDiGcG~G~~~~~l~~~~~~~v~~vD~s~~~l~~ak~~~~~~--------------------------~------ 107 (222)
T d2ex4a1 60 GTSCALDCGAGIGRITKRLLLPLFREVDMVDITEDFLVQAKTYLGEE--------------------------G------ 107 (222)
T ss_dssp CCSEEEEETCTTTHHHHHTTTTTCSEEEEEESCHHHHHHHHHHTGGG--------------------------G------
T ss_pred CCCEEEEeccCCCHhhHHHHHhcCCEEEEeecCHHHhhccccccccc--------------------------c------
Confidence 567999999999999999876655 7999999999998877332110 0
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCCh--hhHHHHHHHHHHhccCCcEEEEecCC---cchhhh
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVWINLGPL---LYHFAD 342 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta--~Ni~~yi~~I~~~LKPGG~wIN~GPL---lYh~~d 342 (397)
..++.+.++|+.++-. ..++||+|++.+.+... +++.++++.|+++|||||++|-.-+. -..+..
T Consensus 108 -------~~~~~f~~~d~~~~~~---~~~~fD~I~~~~~l~h~~~~~~~~~l~~i~~~Lk~~G~~~i~~~~~~~~~~~~~ 177 (222)
T d2ex4a1 108 -------KRVRNYFCCGLQDFTP---EPDSYDVIWIQWVIGHLTDQHLAEFLRRCKGSLRPNGIIVIKDNMAQEGVILDD 177 (222)
T ss_dssp -------GGEEEEEECCGGGCCC---CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEEBSSSEEEET
T ss_pred -------cccccccccccccccc---ccccccccccccccccchhhhhhhHHHHHHHhcCCcceEEEEEccccccccccc
Confidence 0126789999988632 36899999988654422 45678999999999999999953222 111111
Q ss_pred ccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 343 LYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 343 ~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
....+..+.++++++++++||++++.+
T Consensus 178 -----~~~~~~~~~~~~~~l~~~aGf~ii~~~ 204 (222)
T d2ex4a1 178 -----VDSSVCRDLDVVRRIICSAGLSLLAEE 204 (222)
T ss_dssp -----TTTEEEEBHHHHHHHHHHTTCCEEEEE
T ss_pred -----CCceeeCCHHHHHHHHHHcCCEEEEEE
Confidence 112345699999999999999998865
|
| >d2p7ia1 c.66.1.41 (A:22-246) Hypothetical protein ECA1738 {Erwinia carotovora [TaxId: 554]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical protein ECA1738 species: Erwinia carotovora [TaxId: 554]
Probab=99.70 E-value=3.2e-17 Score=148.93 Aligned_cols=150 Identities=15% Similarity=0.145 Sum_probs=107.8
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
-++..+.+.+ ++.+|||+|||+|+++..||++|++|+|+|+|..|+..|+-.+
T Consensus 10 ~~~~~~~~~~------~~~~VLDiGcG~G~~~~~l~~~g~~v~giD~s~~~i~~a~~~~--------------------- 62 (225)
T d2p7ia1 10 FMVRAFTPFF------RPGNLLELGSFKGDFTSRLQEHFNDITCVEASEEAISHAQGRL--------------------- 62 (225)
T ss_dssp HHHHHHGGGC------CSSCEEEESCTTSHHHHHHTTTCSCEEEEESCHHHHHHHHHHS---------------------
T ss_pred HHHHHhhhhC------CCCcEEEEeCCCcHHHHHHHHcCCeEEEEeCcHHHhhhhhccc---------------------
Confidence 3445555543 3558999999999999999999999999999999997765110
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHH-HhccCCcEEE
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIIS-RILKDGGVWI 331 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~-~~LKPGG~wI 331 (397)
..++.++.+|+.++.. +++||+|++...|.-.+|....++.++ ++|||||+++
T Consensus 63 ----------------------~~~~~~~~~~~~~~~~----~~~fD~I~~~~vleh~~d~~~~l~~i~~~~Lk~gG~l~ 116 (225)
T d2p7ia1 63 ----------------------KDGITYIHSRFEDAQL----PRRYDNIVLTHVLEHIDDPVALLKRINDDWLAEGGRLF 116 (225)
T ss_dssp ----------------------CSCEEEEESCGGGCCC----SSCEEEEEEESCGGGCSSHHHHHHHHHHTTEEEEEEEE
T ss_pred ----------------------cccccccccccccccc----ccccccccccceeEecCCHHHHHHHHHHHhcCCCceEE
Confidence 0136778899877532 478999998876666677889999998 8999999999
Q ss_pred EecCCcchhhh----------ccCCC------CCccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 332 NLGPLLYHFAD----------LYGQE------DEMSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 332 N~GPLlYh~~d----------~~g~~------~~~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
-.-|..+.+.. ..... ......++.++++++++++||++++.+.
T Consensus 117 i~~pn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~l~~~Gf~i~~~~~ 176 (225)
T d2p7ia1 117 LVCPNANAVSRQIAVKMGIISHNSAVTEAEFAHGHRCTYALDTLERDASRAGLQVTYRSG 176 (225)
T ss_dssp EEEECTTCHHHHHHHHTTSSSSTTCCCHHHHHTTCCCCCCHHHHHHHHHHTTCEEEEEEE
T ss_pred EEeCCcccHHHHHHHHhhhhhhhhhcCccccceeeeeccCHHHHHHHHHHCCCEEEEEEE
Confidence 54332211100 00000 0012357999999999999999988653
|
| >d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Putative sarcosine dimethylglycine methyltransferase species: Red algae (Galdieria sulphuraria) [TaxId: 130081]
Probab=99.70 E-value=9.3e-17 Score=150.23 Aligned_cols=154 Identities=17% Similarity=0.103 Sum_probs=109.7
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
.+++.|....+. .++.+|||+|||+|.++..||++ |..|+|+|+|..|+..|+-..+..
T Consensus 54 ~~~~~l~~~~~l---~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvD~s~~~i~~a~~~~~~~----------------- 113 (282)
T d2o57a1 54 WLASELAMTGVL---QRQAKGLDLGAGYGGAARFLVRKFGVSIDCLNIAPVQNKRNEEYNNQA----------------- 113 (282)
T ss_dssp HHHHHHHHTTCC---CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHHHH-----------------
T ss_pred HHHHHHHHhcCC---CCCCEEEEeCCCCcHHHhhhhccCCcEEEEEeccchhhhhhhcccccc-----------------
Confidence 355566554432 36789999999999999999987 899999999999998776332210
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
.+..++.+..+|+.++- ..+++||+|++..-+...+|...+|+.++++|||||+++
T Consensus 114 ---------------------gl~~~v~~~~~d~~~l~---~~~~sfD~V~~~~~l~h~~d~~~~l~~~~~~LkpgG~l~ 169 (282)
T d2o57a1 114 ---------------------GLADNITVKYGSFLEIP---CEDNSYDFIWSQDAFLHSPDKLKVFQECARVLKPRGVMA 169 (282)
T ss_dssp ---------------------TCTTTEEEEECCTTSCS---SCTTCEEEEEEESCGGGCSCHHHHHHHHHHHEEEEEEEE
T ss_pred ---------------------ccccccccccccccccc---ccccccchhhccchhhhccCHHHHHHHHHHhcCCCcEEE
Confidence 11234788999998862 346899999987544434567899999999999999998
Q ss_pred EecCCcch---------hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 332 NLGPLLYH---------FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 332 N~GPLlYh---------~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
-..+..-. +..... .....|.+++.+++++.||+.+...
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~s~~~~~~~l~~~Gf~~i~~~ 217 (282)
T d2o57a1 170 ITDPMKEDGIDKSSIQPILDRIK----LHDMGSLGLYRSLAKECGLVTLRTF 217 (282)
T ss_dssp EEEEEECTTCCGGGGHHHHHHHT----CSSCCCHHHHHHHHHHTTEEEEEEE
T ss_pred EEEeecCCCCchhHHHHHHHHhc----cCCCCCHHHHHHHHHHcCCceEEEE
Confidence 53221100 000000 0123589999999999999988754
|
| >d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein HI0319 (YecO) domain: Hypothetical protein HI0319 (YecO) species: Haemophilus influenzae [TaxId: 727]
Probab=99.70 E-value=1e-16 Score=145.01 Aligned_cols=142 Identities=15% Similarity=0.087 Sum_probs=99.1
Q ss_pred CCCeEEEecCCCChhHHHHHH----cCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCcccccc
Q 015966 189 SPPACLVPGAGLGRLALEISH----LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~----~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~i 264 (397)
++.+|||+|||+|.++..|++ .|++|+|+|+|..||..|+..+...
T Consensus 39 ~~~~vLDlGCGtG~~~~~l~~~~~~~~~~v~giD~S~~ml~~A~~~~~~~------------------------------ 88 (225)
T d1im8a_ 39 ADSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAY------------------------------ 88 (225)
T ss_dssp TTCEEEEESCTTCHHHHHHHHTCCCSSCEEEEECSCHHHHHHHHHHHHTS------------------------------
T ss_pred CCCEEEEeccchhhHHHHHHHhhcCCCCceEEeCCCHHHHHHHHHHhHhh------------------------------
Confidence 567999999999999999997 4889999999999999887433210
Q ss_pred CCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCCcEEEEecCCcch---
Q 015966 265 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYH--- 339 (397)
Q Consensus 265 PDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh--- 339 (397)
.....+.+..+|+.++. .+.+|+|++.+.+. ..++....|+.|+++|||||++|..-+....
T Consensus 89 --------~~~~~~~~~~~d~~~~~-----~~~~d~i~~~~~l~~~~~~d~~~~l~~i~~~LkpgG~li~~~~~~~~~~~ 155 (225)
T d1im8a_ 89 --------HSEIPVEILCNDIRHVE-----IKNASMVILNFTLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFRFEDTK 155 (225)
T ss_dssp --------CCSSCEEEECSCTTTCC-----CCSEEEEEEESCGGGSCGGGHHHHHHHHHHHEEEEEEEEEEEECCCSSHH
T ss_pred --------cccchhhhccchhhccc-----cccceeeEEeeeccccChhhHHHHHHHHHHhCCCCceeecccccccccch
Confidence 00112667788887642 36789888765432 3457889999999999999999964222110
Q ss_pred -----------hhhccCCC-CC----------ccccCCHHHHHHHHHhCCCEEEEE
Q 015966 340 -----------FADLYGQE-DE----------MSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 340 -----------~~d~~g~~-~~----------~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
|....+.. .+ ....+|.+++..+++++||+.++.
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~L~~aGF~~v~~ 211 (225)
T d1im8a_ 156 INHLLIDLHHQFKRANGYSELEVSQKRTALENVMRTDSIETHKVRLKNVGFSQVEL 211 (225)
T ss_dssp HHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHCCCCCHHHHHHHHHHHTCSEEEE
T ss_pred hhhHHHHHHHHHHHHcCCCHHHHHHHHHHhhcccCCCCHHHHHHHHHHcCCCceEE
Confidence 00000100 00 012369999999999999997764
|
| >d2a14a1 c.66.1.15 (A:5-261) Indolethylamine N-methyltransferase, INMT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Indolethylamine N-methyltransferase, INMT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.69 E-value=4.6e-18 Score=155.03 Aligned_cols=194 Identities=15% Similarity=0.073 Sum_probs=111.3
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCc-cccccccccc
Q 015966 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGE-WNIYPWIHSN 249 (397)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~-~~IyPfi~~~ 249 (397)
..++..+.+.+... ..++.+|||+|||+|+++..+|+.|+ .|+|+|+|..|+..|+-.++....... .....++...
T Consensus 35 ~~~~~~~~~~~~~~-~~~g~~vLDlGcG~G~~~~~~~~~~~~~v~giD~S~~~i~~a~~~~~~~~~~~~~~~~~~~~~~~ 113 (257)
T d2a14a1 35 KFNLECLHKTFGPG-GLQGDTLIDIGSGPTIYQVLAACDSFQDITLSDFTDRNREELEKWLKKEPGAYDWTPAVKFACEL 113 (257)
T ss_dssp HHHHHHHHHHHSTT-SCCEEEEEESSCTTCCGGGTTGGGTEEEEEEEESCHHHHHHHHHHHHTCTTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccc-CCCCCEEEEECCCCCHhHHHHhccccCcEEEecCCHHHHHHHHHHHhhccccchhhhHHHHHHHh
Confidence 34555555555432 13677999999999999999998887 699999999999988744432111000 0001111100
Q ss_pred cCCCCcc----cCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCC----hhhHHHHHHHHH
Q 015966 250 CNSLSDS----DQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT----AHNIVEYIEIIS 321 (397)
Q Consensus 250 Sn~~s~~----~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDt----a~Ni~~yi~~I~ 321 (397)
....... ..++... -++ ....+..+. . ..+...++||+|++.|.|.. .++...+++.|+
T Consensus 114 ~~~~~~~~~~~~~~~~~~-~~~---------~~~~~~~~~--~-~~~~~~~~fD~i~~~~~l~~~~~~~~~~~~~l~~i~ 180 (257)
T d2a14a1 114 EGNSGRWEEKEEKLRAAV-KRV---------LKCDVHLGN--P-LAPAVLPLADCVLTLLAMECACCSLDAYRAALCNLA 180 (257)
T ss_dssp TTCGGGHHHHHHHHHHHE-EEE---------EECCTTSSS--T-TTTCCCCCEEEEEEESCHHHHCSSHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHhhhh-hcc---------ccccccccc--c-cccccCCcccEEeehhhHHHhcccHHHHHHHHHHHH
Confidence 0000000 0000000 000 000011111 1 11234689999999876543 357788999999
Q ss_pred HhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeecCCCC
Q 015966 322 RILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTY 380 (397)
Q Consensus 322 ~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~~~Y 380 (397)
++|||||++|-.+++-...... .........++.++|+++++++||++++.+.....|
T Consensus 181 ~~LkpGG~li~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~aGf~v~~~~~~~~~~ 238 (257)
T d2a14a1 181 SLLKPGGHLVTTVTLRLPSYMV-GKREFSCVALEKGEVEQAVLDAGFDIEQLLHSPQSY 238 (257)
T ss_dssp TTEEEEEEEEEEEESSCCEEEE-TTEEEECCCCCHHHHHHHHHHTTEEEEEEEEECCCC
T ss_pred hccCCCcEEEEEEeccccccee-ccccccccCCCHHHHHHHHHHCCCEEEEEEEecccc
Confidence 9999999999765553321111 001111345899999999999999998865444444
|
| >d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Possible histamine N-methyltransferase TM1293 species: Thermotoga maritima [TaxId: 2336]
Probab=99.69 E-value=1.3e-16 Score=141.68 Aligned_cols=144 Identities=22% Similarity=0.152 Sum_probs=104.4
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccccc
Q 015966 171 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (397)
Q Consensus 171 y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~S 250 (397)
|..-+..|....| +.+|||+|||+|+++..++ .++|+|+|..|+..|+-
T Consensus 24 ~~~~~~~~~~~~~------~~~vLDiGcG~G~~~~~~~----~~~giD~s~~~~~~a~~--------------------- 72 (208)
T d1vlma_ 24 YLSELQAVKCLLP------EGRGVEIGVGTGRFAVPLK----IKIGVEPSERMAEIARK--------------------- 72 (208)
T ss_dssp HHHHHHHHHHHCC------SSCEEEETCTTSTTHHHHT----CCEEEESCHHHHHHHHH---------------------
T ss_pred HHHHHHHHHhhCC------CCeEEEECCCCcccccccc----eEEEEeCChhhcccccc---------------------
Confidence 4445566666554 3489999999999998886 47899999999976551
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEE
Q 015966 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVW 330 (397)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~w 330 (397)
.++.++.+|+.++- ..+++||+|++.+.|.-.+++..+|+.++++|||||++
T Consensus 73 -------------------------~~~~~~~~d~~~l~---~~~~~fD~I~~~~~l~h~~d~~~~l~~~~~~L~pgG~l 124 (208)
T d1vlma_ 73 -------------------------RGVFVLKGTAENLP---LKDESFDFALMVTTICFVDDPERALKEAYRILKKGGYL 124 (208)
T ss_dssp -------------------------TTCEEEECBTTBCC---SCTTCEEEEEEESCGGGSSCHHHHHHHHHHHEEEEEEE
T ss_pred -------------------------cccccccccccccc---cccccccccccccccccccccccchhhhhhcCCCCceE
Confidence 01567888987762 34689999999987777778889999999999999999
Q ss_pred EEecCCcchh-----hhc-c-CCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 331 INLGPLLYHF-----ADL-Y-GQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 331 IN~GPLlYh~-----~d~-~-g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
|-..|....+ ... . .........+|.+++.+++++.||+.++.
T Consensus 125 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~l~~~l~~~Gf~~i~v 174 (208)
T d1vlma_ 125 IVGIVDRESFLGREYEKNKEKSVFYKNARFFSTEELMDLMRKAGFEEFKV 174 (208)
T ss_dssp EEEEECSSSHHHHHHHHTTTC-CCSTTCCCCCHHHHHHHHHHTTCEEEEE
T ss_pred EEEecCCcchhHHhhhhccccccccccccCCCHHHHHHHHHHcCCeEEEE
Confidence 8544332211 110 0 00111123479999999999999998773
|
| >d2g72a1 c.66.1.15 (A:18-280) Phenylethanolamine N-methyltransferase, PNMTase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arylamine N-methyltransferase domain: Phenylethanolamine N-methyltransferase, PNMTase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.68 E-value=1.2e-17 Score=156.12 Aligned_cols=182 Identities=16% Similarity=0.145 Sum_probs=114.5
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccc-
Q 015966 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN- 249 (397)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~- 249 (397)
..++..+.+.++... .++.+|||+|||+|.++..+|.. +.+|+|+|+|..|+..++.-++.... .+.|.+..
T Consensus 38 ~~~~~~~~~~f~~g~-~~g~~vLDiGcG~g~~~~~~~~~~~~~v~~~D~S~~~i~~~~~~~~~~~~-----~~d~~~~~~ 111 (263)
T d2g72a1 38 PWKLRCLAQTFATGE-VSGRTLIDIGSGPTVYQLLSACSHFEDITMTDFLEVNRQELGRWLQEEPG-----AFNWSMYSQ 111 (263)
T ss_dssp HHHHHHHHHHHHTSC-SCCSEEEEETCTTCCGGGTTGGGGCSEEEEECSCHHHHHHHHHHHTTCTT-----CCCCHHHHH
T ss_pred hhHHHHHHHHcCCCC-CCCcEEEEeccCCCHHHHHHhcccCCeEEEEeCCHHHHHHHHHHHhcCcc-----cccchhhhh
Confidence 344566666665332 36789999999999997666655 55799999999999988755543211 12221100
Q ss_pred --cC---CC----CcccCccccccCCCCCCCCCCCCcceeEeccccccc---CCCCCCCCccEEEEeeccCCh----hhH
Q 015966 250 --CN---SL----SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVY---SDPSQVGAWDAVVTCFFIDTA----HNI 313 (397)
Q Consensus 250 --Sn---~~----s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely---~~~~~~~~fD~VvT~FFIDta----~Ni 313 (397)
+. .. ....++|. ........|...-. ..+...++||+|++.|.|+.. .+.
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~Dv~~~~~~~~~~~~~~~fD~V~~~~~l~~i~~~~~~~ 177 (263)
T d2g72a1 112 HACLIEGKGECWQDKERQLRA--------------RVKRVLPIDVHQPQPLGAGSPAPLPADALVSAFCLEAVSPDLASF 177 (263)
T ss_dssp HHHHHHCSCCCHHHHHHHHHH--------------HEEEEECCCTTSSSTTCSSCSSCSSEEEEEEESCHHHHCSSHHHH
T ss_pred hhhhhccccchhhhhHHHhhh--------------hhhccccccccCCCccccCCcCcCccCeeeeHHHHHHHccCHHHH
Confidence 00 00 00000000 00222333433210 111235789999999977544 467
Q ss_pred HHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 314 VEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 314 ~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
...|+.|+++|||||++|..|++-+++... +......+.+|.|+|+++++++||++++.+
T Consensus 178 ~~~l~~~~~~LkPGG~li~~~~~~~~~~~~-~~~~~~~~~~t~e~v~~~l~~aGf~v~~~~ 237 (263)
T d2g72a1 178 QRALDHITTLLRPGGHLLLIGALEESWYLA-GEARLTVVPVSEEEVREALVRSGYKVRDLR 237 (263)
T ss_dssp HHHHHHHHTTEEEEEEEEEEEEESCCEEEE-TTEEEECCCCCHHHHHHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHcCCCCEEEEecccCCccccc-CCcccccCCCCHHHHHHHHHHCCCeEEEEE
Confidence 889999999999999999988887655432 111112457899999999999999998854
|
| >d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical Protein YjhP domain: Hypothetical Protein YjhP species: Escherichia coli [TaxId: 562]
Probab=99.67 E-value=1.9e-16 Score=144.96 Aligned_cols=156 Identities=17% Similarity=0.156 Sum_probs=111.1
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccccc
Q 015966 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (397)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~S 250 (397)
+.-++.|.+.+.- .++.+|||+|||+|.++..||++ |..|+|+|+|..|+..++-.. ...
T Consensus 19 ~~~~~~l~~~~~l---~pg~~VLDiGCG~G~~~~~la~~~~~~v~GvD~s~~~~~~ar~~~---~~~------------- 79 (245)
T d1nkva_ 19 EEKYATLGRVLRM---KPGTRILDLGSGSGEMLCTWARDHGITGTGIDMSSLFTAQAKRRA---EEL------------- 79 (245)
T ss_dssp HHHHHHHHHHTCC---CTTCEEEEETCTTCHHHHHHHHHTCCEEEEEESCHHHHHHHHHHH---HHT-------------
T ss_pred HHHHHHHHHHcCC---CCCCEEEEEcCCCCHHHHHHHHhcCCEEEEEecccchhhHHHHHH---HHh-------------
Confidence 3355666666553 36789999999999999999886 899999999999998776211 100
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEE
Q 015966 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVW 330 (397)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~w 330 (397)
...+++.+..+|+.++.. +++||+|++..-+....|...+++.++++|||||++
T Consensus 80 ----------------------gl~~~v~~~~~d~~~~~~----~~~fD~v~~~~~~~~~~d~~~~l~~~~r~LkPGG~l 133 (245)
T d1nkva_ 80 ----------------------GVSERVHFIHNDAAGYVA----NEKCDVAACVGATWIAGGFAGAEELLAQSLKPGGIM 133 (245)
T ss_dssp ----------------------TCTTTEEEEESCCTTCCC----SSCEEEEEEESCGGGTSSSHHHHHHHTTSEEEEEEE
T ss_pred ----------------------hccccchhhhhHHhhccc----cCceeEEEEEehhhccCCHHHHHHHHHHHcCcCcEE
Confidence 112347899999988632 588999998876666667789999999999999999
Q ss_pred EEecCCcchh------hhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 331 INLGPLLYHF------ADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 331 IN~GPLlYh~------~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
|-.-|..... ..... .....-.++..++..++++.||+++..
T Consensus 134 ~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~aG~~~v~~ 181 (245)
T d1nkva_ 134 LIGEPYWRQLPATEEIAQACG-VSSTSDFLTLPGLVGAFDDLGYDVVEM 181 (245)
T ss_dssp EEEEEEETTCCSSHHHHHTTT-CSCGGGSCCHHHHHHHHHTTTBCCCEE
T ss_pred EEEeccccCCCChHHHHHHhc-cCCCcccCCHHHHHHHHHHcCCEEEEE
Confidence 8422211000 00000 111122468999999999999998764
|
| >d2avna1 c.66.1.41 (A:1-246) Hypothetical methyltransferase TM1389 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: UbiE/COQ5-like domain: Hypothetical methyltransferase TM1389 species: Thermotoga maritima [TaxId: 2336]
Probab=99.67 E-value=8.4e-17 Score=144.46 Aligned_cols=105 Identities=20% Similarity=0.181 Sum_probs=79.6
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCC
Q 015966 175 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLS 254 (397)
Q Consensus 175 l~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s 254 (397)
...|.++.+ ++.+|||+|||+|+++..||++|++|+|+|+|..|+..|+- +..
T Consensus 33 ~~~~~~~~~-----~~~~vLDiGcG~G~~~~~l~~~~~~v~giD~s~~~l~~a~~---~~~------------------- 85 (246)
T d2avna1 33 GSFLEEYLK-----NPCRVLDLGGGTGKWSLFLQERGFEVVLVDPSKEMLEVARE---KGV------------------- 85 (246)
T ss_dssp HHHHHHHCC-----SCCEEEEETCTTCHHHHHHHTTTCEEEEEESCHHHHHHHHH---HTC-------------------
T ss_pred HHHHHHhcC-----CCCEEEEECCCCchhcccccccceEEEEeeccccccccccc---ccc-------------------
Confidence 344555554 46699999999999999999999999999999999987651 000
Q ss_pred cccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-ccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 255 DSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 255 ~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
-.++.+|+.++- ..+++||+|++.+ ++.-.+|..+.|+.|+++|||||++|-
T Consensus 86 -----------------------~~~~~~~~~~l~---~~~~~fD~ii~~~~~~~~~~d~~~~l~~i~r~Lk~gG~~ii 138 (246)
T d2avna1 86 -----------------------KNVVEAKAEDLP---FPSGAFEAVLALGDVLSYVENKDKAFSEIRRVLVPDGLLIA 138 (246)
T ss_dssp -----------------------SCEEECCTTSCC---SCTTCEEEEEECSSHHHHCSCHHHHHHHHHHHEEEEEEEEE
T ss_pred -----------------------cccccccccccc---cccccccceeeecchhhhhhhHHHHHHHHHhhcCcCcEEEE
Confidence 123557777652 3468999999865 344344567899999999999999984
|
| >d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TehB-like domain: Putative methyltransferase TehB species: Salmonella typhimurium [TaxId: 90371]
Probab=99.66 E-value=3.3e-16 Score=139.25 Aligned_cols=136 Identities=18% Similarity=0.195 Sum_probs=94.4
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|+++..||++|++|+|+|+|..||..++-..... .+
T Consensus 30 ~~grvLDiGcG~G~~~~~la~~g~~v~gvD~s~~~l~~a~~~~~~~--------------------------~~------ 77 (198)
T d2i6ga1 30 APGRTLDLGCGNGRNSLYLAANGYDVTAWDKNPASMANLERIKAAE--------------------------GL------ 77 (198)
T ss_dssp CSCEEEEETCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHHT--------------------------TC------
T ss_pred CCCcEEEECCCCCHHHHHHHHHhhhhccccCcHHHHHHHHHHhhhc--------------------------cc------
Confidence 3459999999999999999999999999999999998766322100 00
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCC
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQ 346 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~ 346 (397)
.++.+..+|+.++.. +++||+|++.+.+. +..++..+++.++++|||||+++-.... +..+...
T Consensus 78 -------~~~~~~~~d~~~~~~----~~~fD~I~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~~~~~~~~--~~~~~~~- 143 (198)
T d2i6ga1 78 -------DNLQTDLVDLNTLTF----DGEYDFILSTVVMMFLEAQTIPGLIANMQRCTKPGGYNLIVAAM--DTPDFPC- 143 (198)
T ss_dssp -------TTEEEEECCTTTCCC----CCCEEEEEEESCGGGSCTTHHHHHHHHHHHTEEEEEEEEEEEEB--C-------
T ss_pred -------cchhhhheecccccc----cccccEEEEeeeeecCCHHHHHHHHHHHHHHcCCCcEEEEEEec--CCccCCC-
Confidence 126677888877532 57899999765332 3356889999999999999998853111 1111000
Q ss_pred CCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 347 EDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 347 ~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
.......++.+|+++++ .||+++.
T Consensus 144 ~~~~~~~~~~~el~~~~--~~~~i~~ 167 (198)
T d2i6ga1 144 TVGFPFAFKEGELRRYY--EGWDMLK 167 (198)
T ss_dssp ---CCCCBCTTHHHHHT--TTSEEEE
T ss_pred CCCCCCccCHHHHHHHh--CCCeEEE
Confidence 00112456778888887 5899886
|
| >d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap (Guanine N-7) methyltransferase domain: mRNA cap (Guanine N-7) methyltransferase species: Fungus (Encephalitozoon cuniculi) [TaxId: 6035]
Probab=99.66 E-value=6.9e-16 Score=142.22 Aligned_cols=146 Identities=14% Similarity=0.121 Sum_probs=101.2
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|+++..+++.|+ .|+|+|+|..||..|+...+..
T Consensus 24 ~~~~VLDlGCG~G~~~~~~~~~~~~~v~GiD~S~~~l~~A~~r~~~~--------------------------------- 70 (252)
T d1ri5a_ 24 RGDSVLDLGCGKGGDLLKYERAGIGEYYGVDIAEVSINDARVRARNM--------------------------------- 70 (252)
T ss_dssp TTCEEEEETCTTTTTHHHHHHHTCSEEEEEESCHHHHHHHHHHHHTS---------------------------------
T ss_pred CcCEEEEecccCcHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHhc---------------------------------
Confidence 567999999999999999999998 6999999999998776322110
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeec----cCChhhHHHHHHHHHHhccCCcEEEEecCC-------
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFF----IDTAHNIVEYIEIISRILKDGGVWINLGPL------- 336 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FF----IDta~Ni~~yi~~I~~~LKPGG~wIN~GPL------- 336 (397)
....++.+.++|...... ...++||+|++.+. .++.+++..+|+.|+++|||||++|-.-|-
T Consensus 71 -----~~~~~v~f~~~D~~~~~~--~~~~~fD~V~~~~~l~~~~~~~~~~~~~l~~i~~~Lk~gG~~i~~~~~~~~i~~~ 143 (252)
T d1ri5a_ 71 -----KRRFKVFFRAQDSYGRHM--DLGKEFDVISSQFSFHYAFSTSESLDIAQRNIARHLRPGGYFIMTVPSRDVILER 143 (252)
T ss_dssp -----CCSSEEEEEESCTTTSCC--CCSSCEEEEEEESCGGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEECHHHHHHH
T ss_pred -----CCCcceEEEEcchhhhcc--cccccceEEEEcceeeecCCCHHHHHHHHHHHhceeCCCCEEEEEecCHHHHHHH
Confidence 011237788999765322 13578999988753 466677889999999999999999942111
Q ss_pred ---------cchh--hhcc-----CC-----------CCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 337 ---------LYHF--ADLY-----GQ-----------EDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 337 ---------lYh~--~d~~-----g~-----------~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
+|.. +... +. .....+-+..+.++++++++||+++...
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~E~l~~~~~l~~~~~~~g~~lv~~~ 208 (252)
T d1ri5a_ 144 YKQGRMSNDFYKIELEKMEDVPMESVREYRFTLLDSVNNCIEYFVDFTRMVDGFKRLGLSLVERK 208 (252)
T ss_dssp HHHTCCBCSSEEEECCCCSSCCTTTCCEEEEEETTSCSSEEEECCCHHHHHHHHHTTTEEEEEEE
T ss_pred HHhcccCCceEEEecccccCCcCcCceEEEEEcccccccCcccccCHHHHHHHHHHcCCEEEEEe
Confidence 1111 0000 00 0000112478999999999999998754
|
| >d1xtpa_ c.66.1.42 (A:) Hypothetical protein Lmaj004091aaa (LmjF30.0810) {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: AD-003 protein-like domain: Hypothetical protein Lmaj004091aaa (LmjF30.0810) species: Leishmania major [TaxId: 5664]
Probab=99.65 E-value=3e-16 Score=146.42 Aligned_cols=141 Identities=16% Similarity=0.067 Sum_probs=101.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
+..+|||+|||+||++..|+.+++ .|+|+|.|..|+..|+-.+..
T Consensus 93 ~~~~vLD~GcG~G~~t~~ll~~~~~~v~~vD~s~~~l~~a~~~~~~---------------------------------- 138 (254)
T d1xtpa_ 93 GTSRALDCGAGIGRITKNLLTKLYATTDLLEPVKHMLEEAKRELAG---------------------------------- 138 (254)
T ss_dssp CCSEEEEETCTTTHHHHHTHHHHCSEEEEEESCHHHHHHHHHHTTT----------------------------------
T ss_pred CCCeEEEecccCChhhHHHHhhcCceEEEEcCCHHHHHhhhccccc----------------------------------
Confidence 567999999999999999887765 699999999999877622110
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccC
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYG 345 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g 345 (397)
...+.+..+|+.++-. .+++||+|++...+. +.+++.++|+.++++|||||++|-.-+....-....+
T Consensus 139 -------~~~~~~~~~d~~~~~~---~~~~fD~I~~~~vl~hl~d~d~~~~l~~~~~~LkpgG~iii~e~~~~~~~~~~d 208 (254)
T d1xtpa_ 139 -------MPVGKFILASMETATL---PPNTYDLIVIQWTAIYLTDADFVKFFKHCQQALTPNGYIFFKENCSTGDRFLVD 208 (254)
T ss_dssp -------SSEEEEEESCGGGCCC---CSSCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEEEBC--CCEEEE
T ss_pred -------cccceeEEcccccccc---CCCccceEEeeccccccchhhhHHHHHHHHHhcCCCcEEEEEecCCCCCcceec
Confidence 0126778899887632 358999999886443 3355789999999999999999842221110000000
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 346 QEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 346 ~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
....++..|.++++++++++||++++++
T Consensus 209 -~~d~~~~rs~~~~~~l~~~aGf~ii~~~ 236 (254)
T d1xtpa_ 209 -KEDSSLTRSDIHYKRLFNESGVRVVKEA 236 (254)
T ss_dssp -TTTTEEEBCHHHHHHHHHHHTCCEEEEE
T ss_pred -ccCCceeCCHHHHHHHHHHcCCEEEEEE
Confidence 1112566799999999999999999865
|
| >d2nxca1 c.66.1.39 (A:1-254) PrmA-like protein TTHA0656 (TT0836) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ribosomal protein L11 methyltransferase PrmA domain: PrmA-like protein TTHA0656 (TT0836) species: Thermus thermophilus [TaxId: 274]
Probab=99.60 E-value=1.9e-15 Score=142.31 Aligned_cols=134 Identities=19% Similarity=0.172 Sum_probs=102.5
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
-+++.|.+... ++.+|||+|||+|.++..++++|.+|+|+|+|..|+..|+.... . +
T Consensus 109 l~l~~l~~~~~-----~g~~VLDiGcGsG~l~i~aa~~g~~V~gvDis~~av~~A~~na~---~-n-------------- 165 (254)
T d2nxca1 109 LALKALARHLR-----PGDKVLDLGTGSGVLAIAAEKLGGKALGVDIDPMVLPQAEANAK---R-N-------------- 165 (254)
T ss_dssp HHHHHHHHHCC-----TTCEEEEETCTTSHHHHHHHHTTCEEEEEESCGGGHHHHHHHHH---H-T--------------
T ss_pred HHHHHHHhhcC-----ccCEEEEcccchhHHHHHHHhcCCEEEEEECChHHHHHHHHHHH---H-c--------------
Confidence 46777777643 67799999999999999999999999999999999988873221 0 0
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
.+ +..++.+|+.+... .++||+|+++.+. +.+.++++.+.++|||||++|-
T Consensus 166 --------~~--------------~~~~~~~d~~~~~~----~~~fD~V~ani~~---~~l~~l~~~~~~~LkpGG~lil 216 (254)
T d2nxca1 166 --------GV--------------RPRFLEGSLEAALP----FGPFDLLVANLYA---ELHAALAPRYREALVPGGRALL 216 (254)
T ss_dssp --------TC--------------CCEEEESCHHHHGG----GCCEEEEEEECCH---HHHHHHHHHHHHHEEEEEEEEE
T ss_pred --------CC--------------ceeEEecccccccc----ccccchhhhcccc---ccHHHHHHHHHHhcCCCcEEEE
Confidence 11 13567788776543 4789999987553 4467889999999999999996
Q ss_pred ecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 333 LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 333 ~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
.|.+ .-..+++++.+++.||++++..
T Consensus 217 Sgil----------------~~~~~~v~~~~~~~Gf~~~~~~ 242 (254)
T d2nxca1 217 TGIL----------------KDRAPLVREAMAGAGFRPLEEA 242 (254)
T ss_dssp EEEE----------------GGGHHHHHHHHHHTTCEEEEEE
T ss_pred Eecc----------------hhhHHHHHHHHHHCCCEEEEEE
Confidence 4432 1235789999999999998754
|
| >d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glycine N-methyltransferase domain: Glycine N-methyltransferase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.59 E-value=4e-15 Score=139.84 Aligned_cols=138 Identities=13% Similarity=0.106 Sum_probs=88.9
Q ss_pred HHHHHHHHHhcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHH
Q 015966 148 VRCIIRNIVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICS 227 (397)
Q Consensus 148 v~stL~q~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s 227 (397)
....-..+..+|.......++ .+++.|... ...+|||+|||+|+++..||++|++|+|+|+|..||..|
T Consensus 26 ~~~~~~~~~~~~~~r~~~~~~----~l~~~l~~~-------~~~~vLD~GcG~G~~~~~la~~g~~v~gvD~S~~ml~~A 94 (292)
T d1xvaa_ 26 AARVWQLYIGDTRSRTAEYKA----WLLGLLRQH-------GCHRVLDVACGTGVDSIMLVEEGFSVTSVDASDKMLKYA 94 (292)
T ss_dssp HHHHHHHHHHTTCCBCHHHHH----HHHHHHHHT-------TCCEEEESSCTTSHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred HHHHHHHHhcchhhhHHHHHH----HHHHHhhhc-------CCCEEEEecCCCcHHHHHHHHcCCeeeeccCchHHHHHH
Confidence 333445677777665554443 234444331 456999999999999999999999999999999999877
Q ss_pred HhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee--
Q 015966 228 SFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-- 305 (397)
Q Consensus 228 ~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-- 305 (397)
+-...... ..... ....+..+||..+.......++||+|++.+
T Consensus 95 ~~~~~~~~--~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~~fd~v~~~~~~ 139 (292)
T d1xvaa_ 95 LKERWNRR--KEPAF---------------------------------DKWVIEEANWLTLDKDVPAGDGFDAVICLGNS 139 (292)
T ss_dssp HHHHHHTT--TSHHH---------------------------------HTCEEEECCGGGHHHHSCCTTCEEEEEECSSC
T ss_pred HHHHHhcc--ccccc---------------------------------ceeeeeeccccccccccCCCCCceEEEEecCc
Confidence 63221110 00000 012233445543211001247899998753
Q ss_pred --ccC----ChhhHHHHHHHHHHhccCCcEEE
Q 015966 306 --FID----TAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 306 --FID----ta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
++. ...++..+|+.++++|||||++|
T Consensus 140 ~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~li 171 (292)
T d1xvaa_ 140 FAHLPDSKGDQSEHRLALKNIASMVRPGGLLV 171 (292)
T ss_dssp GGGSCCTTSSSHHHHHHHHHHHHTEEEEEEEE
T ss_pred hhhcCCcccChHHHHHHHHHHHHHcCcCcEEE
Confidence 332 24568889999999999999999
|
| >d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: BC2162-like domain: Methyltransferase BC2162 species: Bacillus cereus [TaxId: 1396]
Probab=99.58 E-value=4.9e-15 Score=139.49 Aligned_cols=118 Identities=17% Similarity=0.175 Sum_probs=90.7
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccc
Q 015966 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 248 (397)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~ 248 (397)
.-.+++|.+.+... .++.+|||+|||+|.++..||+. |..|+|+|+|..|+..|+.....
T Consensus 12 ~d~l~~l~~~~~~~--~~~~~ILDiGcG~G~~~~~la~~~~~~~~v~giD~s~~~l~~a~~~~~~--------------- 74 (281)
T d2gh1a1 12 DDYVSFLVNTVWKI--TKPVHIVDYGCGYGYLGLVLMPLLPEGSKYTGIDSGETLLAEARELFRL--------------- 74 (281)
T ss_dssp HHHHHHHHHTTSCC--CSCCEEEEETCTTTHHHHHHTTTSCTTCEEEEEECCHHHHHHHHHHHHS---------------
T ss_pred HHHHHHHHHHHhcc--CCcCEEEEecCcCCHHHHHHHHhCCCCCEEEEEecchhHhhhhhccccc---------------
Confidence 34567776654322 26789999999999999999985 78999999999999877632210
Q ss_pred ccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCc
Q 015966 249 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGG 328 (397)
Q Consensus 249 ~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG 328 (397)
.+.++.+..+|+.++.. .++||+|++...+...+|....++.++++|||||
T Consensus 75 -------------------------~~~~~~f~~~d~~~~~~----~~~fD~v~~~~~l~~~~d~~~~l~~~~~~LkpgG 125 (281)
T d2gh1a1 75 -------------------------LPYDSEFLEGDATEIEL----NDKYDIAICHAFLLHMTTPETMLQKMIHSVKKGG 125 (281)
T ss_dssp -------------------------SSSEEEEEESCTTTCCC----SSCEEEEEEESCGGGCSSHHHHHHHHHHTEEEEE
T ss_pred -------------------------ccccccccccccccccc----cCCceEEEEehhhhcCCCHHHHHHHHHHHcCcCc
Confidence 01126788899887532 3679999999877777788899999999999999
Q ss_pred EEEEecC
Q 015966 329 VWINLGP 335 (397)
Q Consensus 329 ~wIN~GP 335 (397)
++|-+-|
T Consensus 126 ~lii~~~ 132 (281)
T d2gh1a1 126 KIICFEP 132 (281)
T ss_dssp EEEEEEC
T ss_pred EEEEEEC
Confidence 9996554
|
| >d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: Methoxy mycolic acid synthase 4, Mma4 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.57 E-value=1e-14 Score=138.52 Aligned_cols=153 Identities=12% Similarity=0.018 Sum_probs=103.8
Q ss_pred HHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCC
Q 015966 175 LEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (397)
Q Consensus 175 l~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~ 253 (397)
++.|.+.+. ..++.+|||+|||.|.++..+|++ |..|+|+|+|..|+..++-... +.
T Consensus 41 ~~~~~~~l~---l~~g~~VLDiGCG~G~~a~~~a~~~g~~v~gi~ls~~q~~~a~~~~~---~~---------------- 98 (280)
T d2fk8a1 41 VDLNLDKLD---LKPGMTLLDIGCGWGTTMRRAVERFDVNVIGLTLSKNQHARCEQVLA---SI---------------- 98 (280)
T ss_dssp HHHHHTTSC---CCTTCEEEEESCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHH---TS----------------
T ss_pred HHHHHHHcC---CCCCCEEEEecCCchHHHHHHHHhCceeEEEecchHHHHHHHHHHHH---hh----------------
Confidence 444444443 237889999999999999999977 9999999999999987663221 11
Q ss_pred CcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCC--hhhHHHHHHHHHHhccCCcEEE
Q 015966 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDt--a~Ni~~yi~~I~~~LKPGG~wI 331 (397)
.....+.+...|+.++ .++||.|++.-.+.. .+|...||+.|+++|||||+++
T Consensus 99 -------------------~l~~~~~~~~~d~~~~------~~~fD~i~si~~~eh~~~~~~~~~f~~i~~~LkpgG~~~ 153 (280)
T d2fk8a1 99 -------------------DTNRSRQVLLQGWEDF------AEPVDRIVSIEAFEHFGHENYDDFFKRCFNIMPADGRMT 153 (280)
T ss_dssp -------------------CCSSCEEEEESCGGGC------CCCCSEEEEESCGGGTCGGGHHHHHHHHHHHSCTTCEEE
T ss_pred -------------------ccccchhhhhhhhhhh------ccchhhhhHhhHHHHhhhhhHHHHHHHHHhccCCCceEE
Confidence 0112255666776654 378999998754432 2678899999999999999997
Q ss_pred E--ec-CCcc---------hhhhc----c---CCCCCccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 332 N--LG-PLLY---------HFADL----Y---GQEDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 332 N--~G-PLlY---------h~~d~----~---g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
- ++ .-.+ .++.. + -..| ...-.|.+++.+++++.||++...+.
T Consensus 154 i~~i~~~~~~~~~~~~~~~~~~~~~~~dfI~kyifP-gg~lPS~~~l~~~~e~aGf~v~~~~~ 215 (280)
T d2fk8a1 154 VQSSVSYHPYEMAARGKKLSFETARFIKFIVTEIFP-GGRLPSTEMMVEHGEKAGFTVPEPLS 215 (280)
T ss_dssp EEEEECCCHHHHHTTCHHHHHHHHHHHHHHHHHTST-TCCCCCHHHHHHHHHHTTCBCCCCEE
T ss_pred EEEeeccCcchhhhcccccccccccccchhhhhccC-CCcccchHhhhhhHHhhccccceeee
Confidence 3 11 1001 10000 0 0011 12346999999999999999987543
|
| >d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Carminomycin 4-O-methyltransferase species: Streptomyces peucetius [TaxId: 1950]
Probab=99.55 E-value=9.7e-14 Score=128.25 Aligned_cols=156 Identities=17% Similarity=0.186 Sum_probs=103.4
Q ss_pred HHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCC
Q 015966 176 EELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (397)
Q Consensus 176 ~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~ 253 (397)
+.|.+.++- ....+|||+|||+|.++..||++ +-.++++|++ .|+..++-.+...
T Consensus 70 ~~~~~~~d~---~~~~~VLDvGcG~G~~~~~la~~~p~~~~~~~D~~-~~~~~a~~~~~~~------------------- 126 (253)
T d1tw3a2 70 DAPAAAYDW---TNVRHVLDVGGGKGGFAAAIARRAPHVSATVLEMA-GTVDTARSYLKDE------------------- 126 (253)
T ss_dssp HHHHHHSCC---TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECT-THHHHHHHHHHHT-------------------
T ss_pred HHHHhhcCC---ccCCEEEEeCCCCCHHHHHHHHhcceeEEEEccCH-HHHHHHHHHHHHh-------------------
Confidence 444555542 24579999999999999999999 5678899985 5776655221100
Q ss_pred CcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCCcEEE
Q 015966 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
....+++++.|||++.. ...||+|+..+.|. +.++....|+.++++|||||.+|
T Consensus 127 -------------------~~~~rv~~~~~D~~~~~-----~~~~D~v~~~~vlh~~~d~~~~~~L~~~~~~LkPGG~l~ 182 (253)
T d1tw3a2 127 -------------------GLSDRVDVVEGDFFEPL-----PRKADAIILSFVLLNWPDHDAVRILTRCAEALEPGGRIL 182 (253)
T ss_dssp -------------------TCTTTEEEEECCTTSCC-----SSCEEEEEEESCGGGSCHHHHHHHHHHHHHTEEEEEEEE
T ss_pred -------------------hcccchhhccccchhhc-----ccchhheeeccccccCCchhhHHHHHHHHHhcCCCcEEE
Confidence 11234889999987632 25799999876554 33556789999999999999888
Q ss_pred EecCCcchhhhccCC----------CCCccccCCHHHHHHHHHhCCCEEEEEeecCCC
Q 015966 332 NLGPLLYHFADLYGQ----------EDEMSIELSLEDVKRVALHYGFEFEKEKTIETT 379 (397)
Q Consensus 332 N~GPLlYh~~d~~g~----------~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~~~ 379 (397)
-.-...-. ...... ......+.|.+|++++++++||++++.+.+.++
T Consensus 183 i~e~~~~~-~~~~~~~~~~~dl~~~~~~~g~~rt~~e~~~ll~~AGf~~~~v~~~~~p 239 (253)
T d1tw3a2 183 IHERDDLH-ENSFNEQFTELDLRMLVFLGGALRTREKWDGLAASAGLVVEEVRQLPSP 239 (253)
T ss_dssp EEECCBCG-GGCCSHHHHHHHHHHHHHHSCCCCBHHHHHHHHHHTTEEEEEEEEEECS
T ss_pred EEeccCCC-CCcchhHHHHhhHHHHhhCCCcCCCHHHHHHHHHHCCCeEEEEEECCCC
Confidence 42111100 000000 000023569999999999999999886654443
|
| >d1g8sa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.53 E-value=7.1e-14 Score=129.33 Aligned_cols=179 Identities=13% Similarity=0.026 Sum_probs=115.0
Q ss_pred HHhcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhh
Q 015966 155 IVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILN 232 (397)
Q Consensus 155 ~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn 232 (397)
-+|-|... | +.+-..|.+-+......++.+|||+|||+|..+..||+.+ -.|+|+|+|+.|+..++...
T Consensus 48 e~r~w~p~----r----sklaA~i~~gl~~l~ikpG~~VLDlGcGsG~~~~~la~~~~~g~V~aVDiS~~~i~~a~~~a- 118 (230)
T d1g8sa_ 48 EYRIWNPN----K----SKLAAAIIKGLKVMPIKRDSKILYLGASAGTTPSHVADIADKGIVYAIEYAPRIMRELLDAC- 118 (230)
T ss_dssp EEEECCTT----T----CHHHHHHHTTCCCCCCCTTCEEEEESCCSSHHHHHHHHHTTTSEEEEEESCHHHHHHHHHHT-
T ss_pred eeeeECCC----c----cHHHHHHHhhHHhCCCCCCCEEEEeCEEcCHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHH-
Confidence 48888853 2 2466666665444334578999999999999999999985 47999999999997655321
Q ss_pred cccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhh
Q 015966 233 HTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN 312 (397)
Q Consensus 233 ~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N 312 (397)
.+. .++..+.+|...... .....+|+++.+..+....+
T Consensus 119 --~~~--------------------------------------~ni~~i~~d~~~~~~--~~~~~~~v~~i~~~~~~~~~ 156 (230)
T d1g8sa_ 119 --AER--------------------------------------ENIIPILGDANKPQE--YANIVEKVDVIYEDVAQPNQ 156 (230)
T ss_dssp --TTC--------------------------------------TTEEEEECCTTCGGG--GTTTCCCEEEEEECCCSTTH
T ss_pred --hhh--------------------------------------cccceEEEeeccCcc--cccccceeEEeeccccchHH
Confidence 110 113334455444322 12355666555444445566
Q ss_pred HHHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeecCCCCCCCccccccccc
Q 015966 313 IVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQVSF 392 (397)
Q Consensus 313 i~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~~~Y~~d~~sm~~~~Y 392 (397)
...+++.+++.|||||.++-. .+....+ ... ....+.+++++.|++.||++++... ..+|-.| -.|.-..|
T Consensus 157 ~~~~l~~~~r~LKpgG~~~i~---~k~~~~d-~~~---~~~~~~~e~~~~L~~aGF~ive~id-L~py~~~-H~~vvg~y 227 (230)
T d1g8sa_ 157 AEILIKNAKWFLKKGGYGMIA---IKARSID-VTK---DPKEIFKEQKEILEAGGFKIVDEVD-IEPFEKD-HVMFVGIW 227 (230)
T ss_dssp HHHHHHHHHHHEEEEEEEEEE---EEGGGTC-SSS---CHHHHHHHHHHHHHHHTEEEEEEEE-CTTTSTT-EEEEEEEE
T ss_pred HHHHHHHHHHhcccCceEEEE---eeccccC-CCC---CHHHHHHHHHHHHHHcCCEEEEEec-CCCCcCC-eEEEEEEe
Confidence 788999999999999998842 1111111 111 2234568889999999999987653 3567555 44555555
Q ss_pred c
Q 015966 393 L 393 (397)
Q Consensus 393 ~ 393 (397)
+
T Consensus 228 ~ 228 (230)
T d1g8sa_ 228 E 228 (230)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d1kpga_ c.66.1.18 (A:) CmaA1 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA1 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.52 E-value=8.3e-14 Score=132.84 Aligned_cols=155 Identities=12% Similarity=0.091 Sum_probs=108.0
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
.++.|.+.+.. .++.+|||+|||.|.++..+|+. |.+|+|+.+|..++..++-.. .+.
T Consensus 50 k~~~~~~~l~l---~~G~~VLDiGCG~G~~a~~~a~~~g~~v~git~s~~Q~~~a~~~~---~~~--------------- 108 (285)
T d1kpga_ 50 KIDLALGKLGL---QPGMTLLDVGCGWGATMMRAVEKYDVNVVGLTLSKNQANHVQQLV---ANS--------------- 108 (285)
T ss_dssp HHHHHHTTTTC---CTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHH---HTC---------------
T ss_pred HHHHHHHHcCC---CCCCEEEEecCcchHHHHHHHhcCCcceEEEeccHHHHHHHHHHH---Hhh---------------
Confidence 55666655542 37899999999999999998776 999999999999988766221 110
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCCh--hhHHHHHHHHHHhccCCcEE
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA--HNIVEYIEIISRILKDGGVW 330 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta--~Ni~~yi~~I~~~LKPGG~w 330 (397)
....++.+..+|+.++ +++||.|++.-.+... .|...||+.|+++|||||++
T Consensus 109 --------------------g~~~~v~~~~~d~~~~------~~~fD~i~si~~~eh~~~~~~~~~~~~~~r~LkpgG~~ 162 (285)
T d1kpga_ 109 --------------------ENLRSKRVLLAGWEQF------DEPVDRIVSIGAFEHFGHERYDAFFSLAHRLLPADGVM 162 (285)
T ss_dssp --------------------CCCSCEEEEESCGGGC------CCCCSEEEEESCGGGTCTTTHHHHHHHHHHHSCTTCEE
T ss_pred --------------------hhhhhhHHHHhhhhcc------cccccceeeehhhhhcCchhHHHHHHHHHhhcCCCCcE
Confidence 1123477788898765 3689999998544433 67789999999999999999
Q ss_pred EE--ec---CCc-------chhh--hc--c---CCCCCccccCCHHHHHHHHHhCCCEEEEEeec
Q 015966 331 IN--LG---PLL-------YHFA--DL--Y---GQEDEMSIELSLEDVKRVALHYGFEFEKEKTI 376 (397)
Q Consensus 331 IN--~G---PLl-------Yh~~--d~--~---g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i 376 (397)
+- ++ |.. +++. .. + ...| .+.-.|.+++..++++.||+++....+
T Consensus 163 ~l~~i~~~~~~~~~~~~~~~~~~~~~~~~fi~kyiFp-gg~lPsl~~~~~~~e~agf~v~~~~~~ 226 (285)
T d1kpga_ 163 LLHTITGLHPKEIHERGLPMSFTFARFLKFIVTEIFP-GGRLPSIPMVQECASANGFTVTRVQSL 226 (285)
T ss_dssp EEEEEEECCHHHHTTTTCSCHHHHHHHHHHHHHHTST-TCCCCCHHHHHHHHHTTTCEEEEEEEC
T ss_pred EEEEEeccCchhhccccCCcchhhhchhhHHHHHhcc-CCCCCChhhHHHHHHHhchhhcccccc
Confidence 83 21 110 0100 00 0 0011 123469999999999999999986544
|
| >d1kpia_ c.66.1.18 (A:) CmaA2 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Mycolic acid cyclopropane synthase domain: CmaA2 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.50 E-value=2.1e-13 Score=130.43 Aligned_cols=159 Identities=11% Similarity=-0.013 Sum_probs=107.1
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHH-cCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISH-LGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~-~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
.++.|.+.+. ..++.+|||+|||.|.++..+|+ .|..|+|+++|..++..++-... ..
T Consensus 49 k~~~~~~~l~---l~~G~~VLDiGCG~G~~~~~~a~~~g~~v~git~s~~q~~~a~~~~~---~~--------------- 107 (291)
T d1kpia_ 49 KRKLALDKLN---LEPGMTLLDIGCGWGSTMRHAVAEYDVNVIGLTLSENQYAHDKAMFD---EV--------------- 107 (291)
T ss_dssp HHHHHHHTTC---CCTTCEEEEETCTTSHHHHHHHHHHCCEEEEEESCHHHHHHHHHHHH---HS---------------
T ss_pred HHHHHHHhcC---CCCCCEEEEecCcchHHHHHHHHhcCcceeeccchHHHHHHHHHHHH---hh---------------
Confidence 4455554443 23788999999999999999985 59999999999999887663221 10
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCC---------hhhHHHHHHHHHHh
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT---------AHNIVEYIEIISRI 323 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDt---------a~Ni~~yi~~I~~~ 323 (397)
.+...+.+..+|+... +++||.|++.=.+.. .+|...||+.|+++
T Consensus 108 --------------------~l~~~v~~~~~d~~~~------~~~fD~i~sie~~eH~~~~~~~~~~~~~~~~f~~i~~~ 161 (291)
T d1kpia_ 108 --------------------DSPRRKEVRIQGWEEF------DEPVDRIVSLGAFEHFADGAGDAGFERYDTFFKKFYNL 161 (291)
T ss_dssp --------------------CCSSCEEEEECCGGGC------CCCCSEEEEESCGGGTTCCSSCCSTTHHHHHHHHHHHT
T ss_pred --------------------ccchhhhhhhhccccc------ccccceEeechhHHhcchhhhhhHHHHHHHHHHHHHHh
Confidence 1112356666775432 478999998732221 26788999999999
Q ss_pred ccCCcEEEE--ec--CCcchhhhccC---------------CCCCccccCCHHHHHHHHHhCCCEEEEEeecCCCC
Q 015966 324 LKDGGVWIN--LG--PLLYHFADLYG---------------QEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTY 380 (397)
Q Consensus 324 LKPGG~wIN--~G--PLlYh~~d~~g---------------~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~~~Y 380 (397)
|||||+++- ++ .-.|.++.... ..| ...-.|..++..++++.||+++....+..-|
T Consensus 162 LkpgG~~~l~~i~~~~~~~~~~~~~~~p~~~~~~~~fi~kyiFp-gg~lps~~~~~~~~e~~gl~v~~~~~~~~hY 236 (291)
T d1kpia_ 162 TPDDGRMLLHTITIPDKEEAQELGLTSPMSLLRFIKFILTEIFP-GGRLPRISQVDYYSSNAGWKVERYHRIGANY 236 (291)
T ss_dssp SCTTCEEEEEEEECCCHHHHHHHTCCCCHHHHHHHHHHHHHTCT-TCCCCCHHHHHHHHHHHTCEEEEEEECGGGH
T ss_pred CCCCCceEEEEEeccCcchhhhccCCCchhhcccchHHHHHhcC-CCCCCCHHHHHhhhcccccccceeeeccccH
Confidence 999999984 21 11122110000 011 1345699999999999999999876554444
|
| >d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Histamine methyltransferase domain: Histamine methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=1.1e-13 Score=128.38 Aligned_cols=148 Identities=16% Similarity=0.227 Sum_probs=95.6
Q ss_pred CCCeEEEecCCCChhHHHHHHc--------CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCcc
Q 015966 189 SPPACLVPGAGLGRLALEISHL--------GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLR 260 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--------Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr 260 (397)
+..+|||+|||+|.++..|++. +..++|+|.|..|+..++--.... .. +.
T Consensus 40 ~~~~VLDiGcG~G~~~~~ll~~l~~~~~~~~~~~~~vD~s~~~l~~a~~~~~~~------~~----------------~~ 97 (280)
T d1jqea_ 40 SEIKILSIGGGAGEIDLQILSKVQAQYPGVCINNEVVEPSAEQIAKYKELVAKI------SN----------------LE 97 (280)
T ss_dssp SEEEEEEETCTTSHHHHHHHHHHHHHSTTCEEEEEEECCCHHHHHHHHHHHTTC------CS----------------CT
T ss_pred CCCeEEEEcCCCCHHHHHHHHHhhhhccCCceEEEEEeCcHHHHHHHHHHHhhc------cc----------------cc
Confidence 4568999999999998888664 346899999999998766221100 00 00
Q ss_pred ccccCCCCCCCCCCCCcceeEeccccccc---CCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe---c
Q 015966 261 PVSIPDIHPASAGITEGFSMCGGDFVEVY---SDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL---G 334 (397)
Q Consensus 261 ~v~iPDv~p~~~~~~~~ls~~~GDF~ely---~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~---G 334 (397)
.+ .+.+...++.++. ..+...++||+|++.+.|.-.+++..+|+.++++|||||+++-. +
T Consensus 98 ~~--------------~~~~~~~~~~~~~~~~~~~~~~~~fD~I~~~~~l~~~~d~~~~l~~l~~~LkpgG~l~i~~~~~ 163 (280)
T d1jqea_ 98 NV--------------KFAWHKETSSEYQSRMLEKKELQKWDFIHMIQMLYYVKDIPATLKFFHSLLGTNAKMLIIVVSG 163 (280)
T ss_dssp TE--------------EEEEECSCHHHHHHHHTTSSSCCCEEEEEEESCGGGCSCHHHHHHHHHHTEEEEEEEEEEEECT
T ss_pred cc--------------cccchhhhhhhhcchhcccCCCCceeEEEEccceecCCCHHHHHHHHHhhCCCCCEEEEEEecC
Confidence 11 1344444443221 11234689999999887766667889999999999999987632 1
Q ss_pred CC----cch-hhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 335 PL----LYH-FADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 335 PL----lYh-~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
+- +|. +...+. .+...-.++.+++.+++++.||+.+..
T Consensus 164 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~L~~~G~~~~~~ 206 (280)
T d1jqea_ 164 SSGWDKLWKKYGSRFP-QDDLCQYITSDDLTQMLDNLGLKYECY 206 (280)
T ss_dssp TSHHHHHHHHHGGGSC-CCTTSCCCCHHHHHHHHHHHTCCEEEE
T ss_pred cchHHHHHHHHHHhcC-CCcccccCCHHHHHHHHHHCCCceEEE
Confidence 11 111 111111 111233578999999999999987664
|
| >d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Aclacinomycin-10-hydroxylase RdmB species: Streptomyces purpurascens [TaxId: 1924]
Probab=99.43 E-value=2.2e-12 Score=119.94 Aligned_cols=143 Identities=16% Similarity=0.121 Sum_probs=98.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
...+|||+|||+|+++..|+++ +-.++++|+ +.|+..++-.+...
T Consensus 81 ~~~~vlDvG~G~G~~~~~l~~~~P~~~~~~~Dl-p~~~~~a~~~~~~~-------------------------------- 127 (256)
T d1qzza2 81 AVRHVLDVGGGNGGMLAAIALRAPHLRGTLVEL-AGPAERARRRFADA-------------------------------- 127 (256)
T ss_dssp TCCEEEEETCTTSHHHHHHHHHCTTCEEEEEEC-HHHHHHHHHHHHHT--------------------------------
T ss_pred cCCEEEEECCCCCHHHHHHHHhhcCcEEEEecC-hHHHHHHHHHHhhc--------------------------------
Confidence 4568999999999999999999 678999998 56776665322110
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhc-
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADL- 343 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~- 343 (397)
....++.++.+||.+-. ...||+|+..+.+. ..++....|+.|+++|||||.+|-+.+........
T Consensus 128 ------~~~~ri~~~~~d~~~~~-----p~~~D~v~~~~vLh~~~d~~~~~lL~~i~~~LkpgG~llI~d~~~~~~~~~~ 196 (256)
T d1qzza2 128 ------GLADRVTVAEGDFFKPL-----PVTADVVLLSFVLLNWSDEDALTILRGCVRALEPGGRLLVLDRADVEGDGAD 196 (256)
T ss_dssp ------TCTTTEEEEECCTTSCC-----SCCEEEEEEESCGGGSCHHHHHHHHHHHHHHEEEEEEEEEEECCH-------
T ss_pred ------CCcceeeeeeeeccccc-----cccchhhhccccccccCcHHHHHHHHHHHhhcCCcceeEEEEeccCCCCccc
Confidence 11234788999987621 24699998876554 33557789999999999999888543322110000
Q ss_pred ------cCC---CCCccccCCHHHHHHHHHhCCCEEEEEee
Q 015966 344 ------YGQ---EDEMSIELSLEDVKRVALHYGFEFEKEKT 375 (397)
Q Consensus 344 ------~g~---~~~~~ieLS~EEl~~ll~~~GFeii~e~~ 375 (397)
.+. ......+.|.+|++++++++||++++.+.
T Consensus 197 ~~~~~~~d~~ml~~~~g~~rt~~e~~~ll~~AGf~~~~~~~ 237 (256)
T d1qzza2 197 RFFSTLLDLRMLTFMGGRVRTRDEVVDLAGSAGLALASERT 237 (256)
T ss_dssp HHHHHHHHHHHHHHHSCCCCCHHHHHHHHHTTTEEEEEEEE
T ss_pred HHHHHHHHHHHHhhCCCccCCHHHHHHHHHHCCCceeEEEE
Confidence 000 00012457999999999999999998763
|
| >d1zx0a1 c.66.1.16 (A:8-236) Guanidinoacetate methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Guanidinoacetate methyltransferase domain: Guanidinoacetate methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.43 E-value=1.5e-13 Score=125.39 Aligned_cols=153 Identities=16% Similarity=0.032 Sum_probs=97.2
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
|+.+.|.+... +++.+|||+|||+|..+..||+++ ..|+|+|+|..|+..|+......
T Consensus 41 ~~~~~la~~~~----~~g~~VLdIGcG~G~~a~~~a~~~~~~v~~id~s~~~~~~a~~~~~~~----------------- 99 (229)
T d1zx0a1 41 PYMHALAAAAS----SKGGRVLEVGFGMAIAASKVQEAPIDEHWIIECNDGVFQRLRDWAPRQ----------------- 99 (229)
T ss_dssp HHHHHHHHHHT----TTCEEEEEECCTTSHHHHHHHTSCEEEEEEEECCHHHHHHHHHHGGGC-----------------
T ss_pred HHHHHHHHhhc----cCCCeEEEeeccchHHHHHHHHcCCCeEEEeCCCHHHHHHHHHHhhhc-----------------
Confidence 57677766553 257799999999999999999975 68999999999998877322100
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEE-----eeccCChhhHHHHHHHHHHhccC
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT-----CFFIDTAHNIVEYIEIISRILKD 326 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT-----~FFIDta~Ni~~yi~~I~~~LKP 326 (397)
..++.+..+|+.++.. +..+++||.|+- .+-+....+...+++.++++|||
T Consensus 100 -----------------------~~~~~~~~~~~~~~~~-~~~~~~fD~i~fD~~~~~~~~~~~~~~~~~~~~~~r~Lkp 155 (229)
T d1zx0a1 100 -----------------------THKVIPLKGLWEDVAP-TLPDGHFDGILYDTYPLSEETWHTHQFNFIKNHAFRLLKP 155 (229)
T ss_dssp -----------------------SSEEEEEESCHHHHGG-GSCTTCEEEEEECCCCCBGGGTTTHHHHHHHHTHHHHEEE
T ss_pred -----------------------cccccccccccccccc-ccccccccceeecccccccccccccCHHHHHHHHHHHcCC
Confidence 0114455566554322 123578998862 22344556778899999999999
Q ss_pred CcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 327 GGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 327 GG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
||+|+-+.+..+. .......+ .......+.+...+.+.||+.+.
T Consensus 156 GG~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~l~~agF~~~~ 199 (229)
T d1zx0a1 156 GGVLTYCNLTSWG-ELMKSKYS-DITIMFEETQVPALLEAGFRREN 199 (229)
T ss_dssp EEEEEECCHHHHH-HHTTTTCS-CHHHHHHHHTHHHHHHTTCCGGG
T ss_pred CcEEEEEecCCcc-hhhhhhhh-hcchhhhhHHHHHHHHCCCeeEE
Confidence 9999843221111 00000000 01123445666677788997543
|
| >d1p91a_ c.66.1.33 (A:) rRNA methyltransferase RlmA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA methyltransferase RlmA domain: rRNA methyltransferase RlmA species: Escherichia coli [TaxId: 562]
Probab=99.42 E-value=2.4e-13 Score=127.13 Aligned_cols=105 Identities=19% Similarity=0.253 Sum_probs=80.2
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCcccccccccccc
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~S 250 (397)
.+++.|.+.++. ++.+|||+|||+|.++..|++++ ..++|+|+|..|+..|+...
T Consensus 72 ~~~~~l~~~~~~----~~~~iLDiGcG~G~~~~~l~~~~~~~~~~giD~s~~~~~~a~~~~------------------- 128 (268)
T d1p91a_ 72 AIVAQLRERLDD----KATAVLDIGCGEGYYTHAFADALPEITTFGLDVSKVAIKAAAKRY------------------- 128 (268)
T ss_dssp HHHHHHHHHSCT----TCCEEEEETCTTSTTHHHHHHTCTTSEEEEEESCHHHHHHHHHHC-------------------
T ss_pred HHHHHHHHhcCC----CCCEEEEeCCCCcHHHHHHHHHCCCCEEEEecchHhhhhhhhccc-------------------
Confidence 355666776664 56799999999999999999995 57899999999997655110
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEE
Q 015966 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVW 330 (397)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~w 330 (397)
.++.++.+|+.++ |..+++||+|++.+-+.. +++++++|||||++
T Consensus 129 -------------------------~~~~~~~~d~~~l---~~~~~sfD~v~~~~~~~~-------~~e~~rvLkpgG~l 173 (268)
T d1p91a_ 129 -------------------------PQVTFCVASSHRL---PFSDTSMDAIIRIYAPCK-------AEELARVVKPGGWV 173 (268)
T ss_dssp -------------------------TTSEEEECCTTSC---SBCTTCEEEEEEESCCCC-------HHHHHHHEEEEEEE
T ss_pred -------------------------ccccceeeehhhc---cCCCCCEEEEeecCCHHH-------HHHHHHHhCCCcEE
Confidence 1267788998775 234789999987664433 57799999999999
Q ss_pred EEecC
Q 015966 331 INLGP 335 (397)
Q Consensus 331 IN~GP 335 (397)
|-..|
T Consensus 174 ~~~~p 178 (268)
T d1p91a_ 174 ITATP 178 (268)
T ss_dssp EEEEE
T ss_pred EEEee
Confidence 96544
|
| >d1l3ia_ c.66.1.22 (A:) Precorrin-6Y methyltransferase (CbiT) {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Precorrin-6Y methyltransferase (CbiT) domain: Precorrin-6Y methyltransferase (CbiT) species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=99.39 E-value=8.3e-13 Score=116.71 Aligned_cols=124 Identities=19% Similarity=0.234 Sum_probs=91.7
Q ss_pred CCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 188 ESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 188 ~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
+++.+|||+|||+|.++.+||+.+.+|+|+|+|..|+..|+--+.. +
T Consensus 32 ~~g~~VLDiGcGsG~~s~~lA~~~~~V~avD~~~~~l~~a~~n~~~----~----------------------------- 78 (186)
T d1l3ia_ 32 GKNDVAVDVGCGTGGVTLELAGRVRRVYAIDRNPEAISTTEMNLQR----H----------------------------- 78 (186)
T ss_dssp CTTCEEEEESCTTSHHHHHHHTTSSEEEEEESCHHHHHHHHHHHHH----T-----------------------------
T ss_pred CCCCEEEEEECCeEcccccccccceEEEEecCCHHHHHHHHHHHHH----c-----------------------------
Confidence 3678999999999999999999999999999999999887732210 0
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCC
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 347 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~ 347 (397)
....++.++.||+.+... ..+.||+|+.. ....++.++++.+.+.|||||+++-..+. .+
T Consensus 79 -----gl~~~v~~~~gda~~~~~---~~~~~D~v~~~---~~~~~~~~~~~~~~~~LkpgG~lvi~~~~---~e------ 138 (186)
T d1l3ia_ 79 -----GLGDNVTLMEGDAPEALC---KIPDIDIAVVG---GSGGELQEILRIIKDKLKPGGRIIVTAIL---LE------ 138 (186)
T ss_dssp -----TCCTTEEEEESCHHHHHT---TSCCEEEEEES---CCTTCHHHHHHHHHHTEEEEEEEEEEECB---HH------
T ss_pred -----CCCcceEEEECchhhccc---ccCCcCEEEEe---CccccchHHHHHHHHHhCcCCEEEEEeec---cc------
Confidence 112347889999888653 35789999864 34456789999999999999988732111 01
Q ss_pred CCccccCCHHHHHHHHHhCCCEEE
Q 015966 348 DEMSIELSLEDVKRVALHYGFEFE 371 (397)
Q Consensus 348 ~~~~ieLS~EEl~~ll~~~GFeii 371 (397)
+..++.+.+++.||...
T Consensus 139 -------~~~~~~~~l~~~~~~~~ 155 (186)
T d1l3ia_ 139 -------TKFEAMECLRDLGFDVN 155 (186)
T ss_dssp -------HHHHHHHHHHHTTCCCE
T ss_pred -------cHHHHHHHHHHcCCCeE
Confidence 23456677788888543
|
| >d1dusa_ c.66.1.4 (A:) Hypothetical protein MJ0882 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Hypothetical protein MJ0882 domain: Hypothetical protein MJ0882 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=99.39 E-value=1.5e-12 Score=115.64 Aligned_cols=102 Identities=14% Similarity=0.133 Sum_probs=77.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+|||+|.++..+|+.+..|+|+|+|..|+..++..++. + .+.
T Consensus 52 ~~~~VLDiGcG~G~~~~~la~~~~~v~~iD~s~~~i~~a~~n~~~----~----------------------~l~----- 100 (194)
T d1dusa_ 52 KDDDILDLGCGYGVIGIALADEVKSTTMADINRRAIKLAKENIKL----N----------------------NLD----- 100 (194)
T ss_dssp TTCEEEEETCTTSHHHHHHGGGSSEEEEEESCHHHHHHHHHHHHH----T----------------------TCT-----
T ss_pred CCCeEEEEeecCChhHHHHHhhccccceeeeccccchhHHHHHHH----h----------------------CCc-----
Confidence 578999999999999999999999999999999999888743321 0 000
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhh-HHHHHHHHHHhccCCcEEE
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN-IVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N-i~~yi~~I~~~LKPGG~wI 331 (397)
..++.+..+|+.+.. .++.||+|++..-+....+ +..+++.+.++|||||+++
T Consensus 101 ------~~~i~~~~~d~~~~~----~~~~fD~Ii~~~p~~~~~~~~~~~l~~~~~~LkpgG~l~ 154 (194)
T d1dusa_ 101 ------NYDIRVVHSDLYENV----KDRKYNKIITNPPIRAGKEVLHRIIEEGKELLKDNGEIW 154 (194)
T ss_dssp ------TSCEEEEECSTTTTC----TTSCEEEEEECCCSTTCHHHHHHHHHHHHHHEEEEEEEE
T ss_pred ------cceEEEEEcchhhhh----ccCCceEEEEcccEEecchhhhhHHHHHHHhcCcCcEEE
Confidence 113678899987632 2578999998743333333 5679999999999999875
|
| >d2fyta1 c.66.1.6 (A:238-548) Protein arginine N-methyltransferase 3, PRMT3 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 3, PRMT3 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.32 E-value=4.1e-12 Score=120.49 Aligned_cols=101 Identities=18% Similarity=0.212 Sum_probs=77.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|.|+..+|++|. .|+|+|.|..|+.+++.+...
T Consensus 35 ~~~~VLDiGcG~G~lsl~aa~~Ga~~V~aid~s~~~~~a~~~~~~~---------------------------------- 80 (311)
T d2fyta1 35 KDKVVLDVGCGTGILSMFAAKAGAKKVLGVDQSEILYQAMDIIRLN---------------------------------- 80 (311)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEESSTHHHHHHHHHHHT----------------------------------
T ss_pred CcCEEEEECCCCCHHHHHHHHcCCCEEEEEeCHHHHHHHHHHHHHh----------------------------------
Confidence 467899999999999999999997 799999999997655533211
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee---ccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
....++.++.+|+.++.. ..++||+|++.. ++.....+..++....++|||||+.|
T Consensus 81 -----~~~~~i~~~~~~~~~l~~---~~~~~D~Ivse~~~~~~~~e~~~~~~~~a~~~~Lkp~G~ii 139 (311)
T d2fyta1 81 -----KLEDTITLIKGKIEEVHL---PVEKVDVIISEWMGYFLLFESMLDSVLYAKNKYLAKGGSVY 139 (311)
T ss_dssp -----TCTTTEEEEESCTTTSCC---SCSCEEEEEECCCBTTBTTTCHHHHHHHHHHHHEEEEEEEE
T ss_pred -----CCCccceEEEeeHHHhcC---ccccceEEEEeeeeeecccccccHHHHHHHHhcCCCCcEEe
Confidence 011237788999888643 357999999853 34444446677888899999999998
|
| >d1oria_ c.66.1.6 (A:) Protein arginine N-methyltransferase 1, PRMT1 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Protein arginine N-methyltransferase 1, PRMT1 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.31 E-value=2.9e-12 Score=122.32 Aligned_cols=101 Identities=16% Similarity=0.151 Sum_probs=76.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|.|+..+|++|. .|+|+|.|..|..+.+.+.. +
T Consensus 33 ~~~~VLDiGcG~G~ls~~aa~~Ga~~V~avd~s~~~~~a~~~~~~-----n----------------------------- 78 (316)
T d1oria_ 33 KDKVVLDVGSGTGILCMFAAKAGARKVIGIECSSISDYAVKIVKA-----N----------------------------- 78 (316)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTTCSEEEEEECSTTHHHHHHHHHH-----T-----------------------------
T ss_pred CcCEEEEEecCCcHHHHHHHHhCCCEEEEEcCcHHHhhhhhHHHH-----h-----------------------------
Confidence 456899999999999999999995 69999999866544332210 1
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee---ccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
...+++.++.||+.++.. ..++||+|++.. ++.....+..+++.+.++|||||++|
T Consensus 79 -----~~~~~v~~~~~~~~~~~~---~~~~~D~ivs~~~~~~l~~e~~~~~~l~~~~r~Lkp~G~ii 137 (316)
T d1oria_ 79 -----KLDHVVTIIKGKVEEVEL---PVEKVDIIISEWMGYCLFYESMLNTVLHARDKWLAPDGLIF 137 (316)
T ss_dssp -----TCTTTEEEEESCTTTCCC---SSSCEEEEEECCCBBTBTBTCCHHHHHHHHHHHEEEEEEEE
T ss_pred -----CCccccceEeccHHHccc---ccceeEEEeeeeeeeeeccHHHHHHHHHHHHhcCCCCeEEE
Confidence 012347889999888642 357899999764 35554567889999999999999998
|
| >d1g6q1_ c.66.1.6 (1:) Arginine methyltransferase, HMT1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Arginine methyltransferase domain: Arginine methyltransferase, HMT1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.29 E-value=7.2e-12 Score=119.91 Aligned_cols=101 Identities=16% Similarity=0.247 Sum_probs=76.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|.|+..+|++|. .|+|+|.|. |+..|+.+... +
T Consensus 38 ~~~~VLDlGcGtG~ls~~aa~~Ga~~V~avd~s~-~~~~a~~~~~~----~----------------------------- 83 (328)
T d1g6q1_ 38 KDKIVLDVGCGTGILSMFAAKHGAKHVIGVDMSS-IIEMAKELVEL----N----------------------------- 83 (328)
T ss_dssp TTCEEEEETCTTSHHHHHHHHTCCSEEEEEESST-HHHHHHHHHHH----T-----------------------------
T ss_pred CcCEEEEeCCCCCHHHHHHHHhCCCEEEEEeCCH-HHHHHHHHHHH----h-----------------------------
Confidence 467999999999999999999997 799999996 55444422211 0
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee---ccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
....++.++.+|+.++.. ..++||+|++.. ++.....+...+..+.++|||||+.|
T Consensus 84 -----~~~~~i~~i~~~~~~l~~---~~~~~D~i~se~~~~~~~~e~~~~~~~~a~~r~LkpgG~ii 142 (328)
T d1g6q1_ 84 -----GFSDKITLLRGKLEDVHL---PFPKVDIIISEWMGYFLLYESMMDTVLYARDHYLVEGGLIF 142 (328)
T ss_dssp -----TCTTTEEEEESCTTTSCC---SSSCEEEEEECCCBTTBSTTCCHHHHHHHHHHHEEEEEEEE
T ss_pred -----CccccceEEEeehhhccC---cccceeEEEEEecceeeccchhHHHHHHHHHhccCCCeEEE
Confidence 012237889999888642 257999999853 45555667788999999999999998
|
| >d1nt2a_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=99.25 E-value=6.1e-11 Score=107.61 Aligned_cols=167 Identities=14% Similarity=0.043 Sum_probs=96.1
Q ss_pred HhcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHHhhhhc
Q 015966 156 VRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSSFILNH 233 (397)
Q Consensus 156 ~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G-f~V~GnD~S~~ML~~s~fiLn~ 233 (397)
+|.|.. .|. .+...+... .....+++.+|||+|||+|..+..||+. | -.|+|+|+|+.|+..++...+
T Consensus 32 ~r~w~p----~rs----klaa~i~~g-~~l~lkpg~~VLDlGcG~G~~~~~la~~v~~g~V~gvDis~~~i~~a~~~a~- 101 (209)
T d1nt2a_ 32 YREWVP----WRS----KLAAMILKG-HRLKLRGDERVLYLGAASGTTVSHLADIVDEGIIYAVEYSAKPFEKLLELVR- 101 (209)
T ss_dssp EEECCG----GGC----HHHHHHHTS-CCCCCCSSCEEEEETCTTSHHHHHHHHHTTTSEEEEECCCHHHHHHHHHHHH-
T ss_pred eeeeCC----cch----HHHHHHhcc-ccCCCCCCCEEEEeCCcCCHHHHHHHHhccCCeEEEEeCCHHHHHHHHHHhh-
Confidence 488873 333 244444432 1122347899999999999999999986 2 279999999999987653221
Q ss_pred ccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhH
Q 015966 234 TETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNI 313 (397)
Q Consensus 234 ~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni 313 (397)
.. .++.++.+|.......+.....+|+|+.. +....+.
T Consensus 102 --~~--------------------------------------~ni~~i~~d~~~~~~~~~~~~~vd~v~~~--~~~~~~~ 139 (209)
T d1nt2a_ 102 --ER--------------------------------------NNIIPLLFDASKPWKYSGIVEKVDLIYQD--IAQKNQI 139 (209)
T ss_dssp --HC--------------------------------------SSEEEECSCTTCGGGTTTTCCCEEEEEEC--CCSTTHH
T ss_pred --cc--------------------------------------CCceEEEeeccCccccccccceEEEEEec--ccChhhH
Confidence 10 12556667765543211112234443322 2223456
Q ss_pred HHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeecCCCCCCC
Q 015966 314 VEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTN 383 (397)
Q Consensus 314 ~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~~~Y~~d 383 (397)
...++.++++|||||+++-. .+.-..+.. .+ .+-..++..+.++ .||+++++.. ..+|-.|
T Consensus 140 ~~~l~~~~~~LkpgG~l~i~---~~~~~~d~~-~~---~~~~~~~~~~~l~-~gf~i~E~i~-L~P~~~~ 200 (209)
T d1nt2a_ 140 EILKANAEFFLKEKGEVVIM---VKARSIDST-AE---PEEVFKSVLKEME-GDFKIVKHGS-LMPYHRD 200 (209)
T ss_dssp HHHHHHHHHHEEEEEEEEEE---EEHHHHCTT-SC---HHHHHHHHHHHHH-TTSEEEEEEE-CTTTCTT
T ss_pred HHHHHHHHHHhccCCeEEEE---EEccccCCC-CC---HHHHHHHHHHHHH-cCCEEEEEEc-cCCCccC
Confidence 68899999999999999842 122111100 11 1112333444443 6999987653 3455543
|
| >d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein TM0748 species: Thermotoga maritima [TaxId: 2336]
Probab=99.24 E-value=1.5e-11 Score=115.99 Aligned_cols=139 Identities=15% Similarity=0.132 Sum_probs=102.1
Q ss_pred hhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCcccccc
Q 015966 168 DQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYP 244 (397)
Q Consensus 168 ~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyP 244 (397)
+..|++-+.+|...+.- +++.+|||+|||+|.++..||+. +-.|+|+|+|..|+..|+-.+...
T Consensus 85 qiiypkd~~~Ii~~l~i---~pG~~VLDiG~GsG~lt~~lA~~~~~~G~V~~vD~~~~~~~~A~~~~~~~---------- 151 (266)
T d1o54a_ 85 QIVYPKDSSFIAMMLDV---KEGDRIIDTGVGSGAMCAVLARAVGSSGKVFAYEKREEFAKLAESNLTKW---------- 151 (266)
T ss_dssp CCCCHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHTTTTCEEEEECCCHHHHHHHHHHHHHT----------
T ss_pred cccchHHHHHHHHhhCC---CCCCEEEECCCCCCHHHHHHHHHhCCCcEEEEEeCCHHHHHHHHHHHHHh----------
Confidence 67899888888887653 47899999999999999999986 348999999999998887433211
Q ss_pred ccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhc
Q 015966 245 WIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRIL 324 (397)
Q Consensus 245 fi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~L 324 (397)
....++.+..+|+.+-+. ...||+|+ +|. ++..++|+.++++|
T Consensus 152 ----------------------------g~~~~v~~~~~d~~~~~~----~~~~D~V~----~d~-p~p~~~l~~~~~~L 194 (266)
T d1o54a_ 152 ----------------------------GLIERVTIKVRDISEGFD----EKDVDALF----LDV-PDPWNYIDKCWEAL 194 (266)
T ss_dssp ----------------------------TCGGGEEEECCCGGGCCS----CCSEEEEE----ECC-SCGGGTHHHHHHHE
T ss_pred ----------------------------ccccCcEEEecccccccc----ccceeeeE----ecC-CCHHHHHHHHHhhc
Confidence 001225566677644332 46788874 454 35678999999999
Q ss_pred cCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 325 KDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 325 KPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
||||.++.+-|.. -..+++.+.+++.||..++
T Consensus 195 KpGG~lv~~~P~~----------------~Qv~~~~~~l~~~gF~~i~ 226 (266)
T d1o54a_ 195 KGGGRFATVCPTT----------------NQVQETLKKLQELPFIRIE 226 (266)
T ss_dssp EEEEEEEEEESSH----------------HHHHHHHHHHHHSSEEEEE
T ss_pred CCCCEEEEEeCcc----------------cHHHHHHHHHHHCCceeEE
Confidence 9999999755531 1235677778889998666
|
| >d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein Ta0852 species: Thermoplasma acidophilum [TaxId: 2303]
Probab=99.23 E-value=1.9e-11 Score=114.55 Aligned_cols=148 Identities=14% Similarity=-0.013 Sum_probs=94.3
Q ss_pred hchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHHhhhhcccccCccccccc
Q 015966 169 QCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPW 245 (397)
Q Consensus 169 ~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPf 245 (397)
..|++=+.++..... .+++.+|||.|||+|.++..||+. | -.|+++|++..|+..|+--+...
T Consensus 68 iiypkD~~~Ii~~l~---i~pG~rVLEiG~GsG~lt~~la~~v~~~g~V~~vD~~e~~~~~A~~n~~~~----------- 133 (250)
T d1yb2a1 68 IISEIDASYIIMRCG---LRPGMDILEVGVGSGNMSSYILYALNGKGTLTVVERDEDNLKKAMDNLSEF----------- 133 (250)
T ss_dssp -------------CC---CCTTCEEEEECCTTSHHHHHHHHHHTTSSEEEEECSCHHHHHHHHHHHHTT-----------
T ss_pred ccCHHHHHHHHHHcC---CCCcCEEEEeeeeCcHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHh-----------
Confidence 455555555655443 347899999999999999999986 3 47999999999998776322100
Q ss_pred cccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhcc
Q 015966 246 IHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILK 325 (397)
Q Consensus 246 i~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LK 325 (397)
....++.+..+|+.+... ++.||+|+. |. ++..++|+.++++||
T Consensus 134 ---------------------------~~~~nv~~~~~Di~~~~~----~~~fD~V~l----d~-p~p~~~l~~~~~~LK 177 (250)
T d1yb2a1 134 ---------------------------YDIGNVRTSRSDIADFIS----DQMYDAVIA----DI-PDPWNHVQKIASMMK 177 (250)
T ss_dssp ---------------------------SCCTTEEEECSCTTTCCC----SCCEEEEEE----CC-SCGGGSHHHHHHTEE
T ss_pred ---------------------------cCCCceEEEEeeeecccc----cceeeeeee----cC-CchHHHHHHHHHhcC
Confidence 001247888999887642 578999964 33 234578999999999
Q ss_pred CCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE-EeecCCCCCC
Q 015966 326 DGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK-EKTIETTYTT 382 (397)
Q Consensus 326 PGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~-e~~i~~~Y~~ 382 (397)
|||+++.+.|.. + -.+++.+.+++.||..++ .+.+...|-.
T Consensus 178 pGG~lv~~~P~i---~-------------Qv~~~~~~l~~~gf~~i~~~E~~~R~~~~ 219 (250)
T d1yb2a1 178 PGSVATFYLPNF---D-------------QSEKTVLSLSASGMHHLETVELMKRRILV 219 (250)
T ss_dssp EEEEEEEEESSH---H-------------HHHHHHHHSGGGTEEEEEEEEEEECCCCC
T ss_pred CCceEEEEeCCc---C-------------hHHHHHHHHHHCCCceeEEEEEEeEEEEE
Confidence 999999755521 0 134556667788998765 3344444443
|
| >d1g8aa_ c.66.1.3 (A:) Fibrillarin homologue {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Fibrillarin homologue domain: Fibrillarin homologue species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=99.13 E-value=3.4e-10 Score=104.27 Aligned_cols=168 Identities=18% Similarity=0.108 Sum_probs=100.6
Q ss_pred HHhcccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHHhhh
Q 015966 155 IVRDWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFIL 231 (397)
Q Consensus 155 ~~RDWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~ML~~s~fiL 231 (397)
-+|-|... |. .+-..|..-+......++.+|||+|||+|.++..||+. | =.|+|+|+|..|+..++-..
T Consensus 47 e~R~w~p~----rS----Klaa~i~~~l~~l~i~pG~~VLDlGaGsG~~t~~la~~VG~~G~V~aVD~s~~~l~~a~~~a 118 (227)
T d1g8aa_ 47 EYRIWNPN----RS----KLGAAIMNGLKNFPIKPGKSVLYLGIASGTTASHVSDIVGWEGKIFGIEFSPRVLRELVPIV 118 (227)
T ss_dssp EEEECCTT----TC----HHHHHHHTTCCCCCCCTTCEEEEETTTSTTHHHHHHHHHCTTSEEEEEESCHHHHHHHHHHH
T ss_pred eEEEECCC----cc----HHHHHHHccccccccCCCCEEEEeccCCCHHHHHHHHHhCCCCEEEEEeCcHHHHHHHHHHH
Confidence 48889753 32 35555655444434458899999999999999999987 4 47999999999997665322
Q ss_pred hcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChh
Q 015966 232 NHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAH 311 (397)
Q Consensus 232 n~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~ 311 (397)
+ .. .++..+.+|.......+.....+|+|+..+. ...
T Consensus 119 ~---~~--------------------------------------~~~~~i~~d~~~~~~~~~~~~~vD~i~~d~~--~~~ 155 (227)
T d1g8aa_ 119 E---ER--------------------------------------RNIVPILGDATKPEEYRALVPKVDVIFEDVA--QPT 155 (227)
T ss_dssp S---SC--------------------------------------TTEEEEECCTTCGGGGTTTCCCEEEEEECCC--STT
T ss_pred H---hc--------------------------------------CCceEEEEECCCcccccccccceEEEEEEcc--ccc
Confidence 1 10 0123344444332211123467887765332 234
Q ss_pred hHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeecCCCCCC
Q 015966 312 NIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTT 382 (397)
Q Consensus 312 Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~~~Y~~ 382 (397)
+....++.+++.|||||+++-. ++ ....+... .-+-...++.+++ +.||++++... ..+|-.
T Consensus 156 ~~~~~l~~~~~~LkpgG~lvi~---~k--a~~~~~~~--~~~~v~~~v~~l~-~~gf~iie~i~-L~p~~~ 217 (227)
T d1g8aa_ 156 QAKILIDNAEVYLKRGGYGMIA---VK--SRSIDVTK--EPEQVFREVEREL-SEYFEVIERLN-LEPYEK 217 (227)
T ss_dssp HHHHHHHHHHHHEEEEEEEEEE---EE--GGGTCTTS--CHHHHHHHHHHHH-HTTSEEEEEEE-CTTTSS
T ss_pred hHHHHHHHHHHhcccCCeEEEE---EE--CCccCCCC--CHHHHHHHHHHHH-HcCCEEEEEEc-CCCCCC
Confidence 5667899999999999999841 11 11100000 0112234566665 45999986533 345543
|
| >d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Probable methyltransferase Rv2118c species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=99.10 E-value=9.3e-11 Score=110.67 Aligned_cols=131 Identities=18% Similarity=0.117 Sum_probs=95.5
Q ss_pred cccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHHhhhhcc
Q 015966 158 DWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNHT 234 (397)
Q Consensus 158 DWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~ML~~s~fiLn~~ 234 (397)
||...=+..-+..|++-+.+|...+.- .++.+||+.|||+|.++..||+. | -.|+++|++..|+..|+--+...
T Consensus 68 ~~~~~~~r~tqiiypkD~s~Ii~~l~i---~PG~~VLE~G~GsG~lt~~La~~vgp~G~V~~~d~~~~~~~~Ar~n~~~~ 144 (264)
T d1i9ga_ 68 DYVMSMPRGPQVIYPKDAAQIVHEGDI---FPGARVLEAGAGSGALTLSLLRAVGPAGQVISYEQRADHAEHARRNVSGC 144 (264)
T ss_dssp HHHTTSCSCSCCCCHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHHHHH
T ss_pred HHHhhccCCccccchHHHHHHHHHhCC---CCCCEEEecCcCCcHHHHHHHHhhCCCcEEEEecCCHHHHHHHHHhhhhh
Confidence 344333333457899999999887753 37899999999999999999987 3 47999999999998877322110
Q ss_pred cccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHH
Q 015966 235 ETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIV 314 (397)
Q Consensus 235 ~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~ 314 (397)
.. ....++.+..+|+.+.. ..++.||+|+ +|. ++..
T Consensus 145 ~~------------------------------------~~~~nv~~~~~d~~~~~---~~~~~fDaV~----ldl-p~P~ 180 (264)
T d1i9ga_ 145 YG------------------------------------QPPDNWRLVVSDLADSE---LPDGSVDRAV----LDM-LAPW 180 (264)
T ss_dssp HT------------------------------------SCCTTEEEECSCGGGCC---CCTTCEEEEE----EES-SCGG
T ss_pred cc------------------------------------CCCceEEEEeccccccc---ccCCCcceEE----Eec-CCHH
Confidence 00 01124778889987742 2368999995 343 4456
Q ss_pred HHHHHHHHhccCCcEEEEecC
Q 015966 315 EYIEIISRILKDGGVWINLGP 335 (397)
Q Consensus 315 ~yi~~I~~~LKPGG~wIN~GP 335 (397)
++++.++++|||||.|+-+-|
T Consensus 181 ~~l~~~~~~LkpGG~lv~~~P 201 (264)
T d1i9ga_ 181 EVLDAVSRLLVAGGVLMVYVA 201 (264)
T ss_dssp GGHHHHHHHEEEEEEEEEEES
T ss_pred HHHHHHHhccCCCCEEEEEeC
Confidence 899999999999999996544
|
| >d1nw3a_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.09 E-value=1e-10 Score=112.45 Aligned_cols=124 Identities=10% Similarity=0.076 Sum_probs=83.3
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
.+..+.+.+.. .++.+|||+|||+|+++..+|+. |. .|.|+|+|..|+..|+-.++..... ...
T Consensus 139 ~~~~~~~~~~l---~~~~~vlD~GcG~G~~~~~~a~~~~~~~~~Gid~s~~~~~~a~~~~~~~~~~--~~~--------- 204 (328)
T d1nw3a_ 139 LVAQMIDEIKM---TDDDLFVDLGSGVGQVVLQVAAATNCKHHYGVEKADIPAKYAETMDREFRKW--MKW--------- 204 (328)
T ss_dssp HHHHHHHHSCC---CTTCEEEEETCTTSHHHHHHHHHCCCSEEEEEECSHHHHHHHHHHHHHHHHH--HHH---------
T ss_pred HHHHHHHHcCC---CCCCEEEEcCCCCCHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHH--hhh---------
Confidence 44555554432 36779999999999999999876 66 5999999999999887554332110 000
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCc--cEEEEeeccCChhhHHHHHHHHHHhccCCcE
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAW--DAVVTCFFIDTAHNIVEYIEIISRILKDGGV 329 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~f--D~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~ 329 (397)
. +++ ..++.+..|||.+... .+..+ |+|+...+.- .+++...++++++.|||||.
T Consensus 205 -----~---g~~-----------~~~i~~~~gd~~~~~~---~~~~~~advi~~~~~~f-~~~~~~~l~e~~r~LKpGg~ 261 (328)
T d1nw3a_ 205 -----Y---GKK-----------HAEYTLERGDFLSEEW---RERIANTSVIFVNNFAF-GPEVDHQLKERFANMKEGGR 261 (328)
T ss_dssp -----H---TCC-----------CCCEEEEECCTTSHHH---HHHHHHCSEEEECCTTT-CHHHHHHHHHHHTTCCTTCE
T ss_pred -----c---ccc-----------CCceEEEECccccccc---ccccCcceEEEEcceec-chHHHHHHHHHHHhCCCCcE
Confidence 0 001 1238899999987521 12344 4555433333 35688999999999999999
Q ss_pred EEEec
Q 015966 330 WINLG 334 (397)
Q Consensus 330 wIN~G 334 (397)
+|..-
T Consensus 262 iv~~~ 266 (328)
T d1nw3a_ 262 IVSSK 266 (328)
T ss_dssp EEESS
T ss_pred EEEec
Confidence 99643
|
| >d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Thermotoga maritima [TaxId: 2336]
Probab=99.09 E-value=2e-10 Score=104.09 Aligned_cols=110 Identities=18% Similarity=0.149 Sum_probs=79.1
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHHhhhhcccccCcccccccccc
Q 015966 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 248 (397)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~ 248 (397)
+-++..+.+.+. .+++.+|||+|||+|+++..||++ | -.|+++|++..|+..|+..+....
T Consensus 61 P~~~a~~l~~l~---l~~g~~VLdiG~GtG~~s~~la~~~~~~g~V~~id~~~~~~~~a~~~~~~~~------------- 124 (213)
T d1dl5a1 61 PSLMALFMEWVG---LDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVERLG------------- 124 (213)
T ss_dssp HHHHHHHHHHTT---CCTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHTT-------------
T ss_pred chhhHHHHHhhh---ccccceEEEecCccchhHHHHHHHhCCCCcEEEeecchhhHHHhhhhHhhhc-------------
Confidence 445555555553 237889999999999999999986 3 479999999999998875442210
Q ss_pred ccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCc
Q 015966 249 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGG 328 (397)
Q Consensus 249 ~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG 328 (397)
..++.+..||..+.+. ..++||+|+..+-+...+ +.+.+.|||||
T Consensus 125 --------------------------~~n~~~~~~d~~~~~~---~~~~fD~I~~~~~~~~~p------~~l~~~LkpGG 169 (213)
T d1dl5a1 125 --------------------------IENVIFVCGDGYYGVP---EFSPYDVIFVTVGVDEVP------ETWFTQLKEGG 169 (213)
T ss_dssp --------------------------CCSEEEEESCGGGCCG---GGCCEEEEEECSBBSCCC------HHHHHHEEEEE
T ss_pred --------------------------ccccccccCchHHccc---cccchhhhhhhccHHHhH------HHHHHhcCCCc
Confidence 0135667888776543 357899999877655432 34678899999
Q ss_pred EEEE
Q 015966 329 VWIN 332 (397)
Q Consensus 329 ~wIN 332 (397)
++|-
T Consensus 170 ~lv~ 173 (213)
T d1dl5a1 170 RVIV 173 (213)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9985
|
| >d2fcaa1 c.66.1.53 (A:10-213) tRNA (guanine-N(7)-)-methyltransferase TrmB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Bacillus subtilis [TaxId: 1423]
Probab=99.06 E-value=2.9e-10 Score=102.96 Aligned_cols=127 Identities=14% Similarity=0.168 Sum_probs=85.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
.+..|||+|||+|+.+..||++ +..++|+|+|..|+..+.-.. .+. .
T Consensus 29 ~~PlvLeIGcG~G~~~~~lA~~~p~~~~iGiD~~~~~i~~a~~~~---~~~-----------------------~----- 77 (204)
T d2fcaa1 29 DNPIHIEVGTGKGQFISGMAKQNPDINYIGIELFKSVIVTAVQKV---KDS-----------------------E----- 77 (204)
T ss_dssp CCCEEEEECCTTSHHHHHHHHHCTTSEEEEECSCHHHHHHHHHHH---HHS-----------------------C-----
T ss_pred CCceEEEEEecCcHHHHHHHHhCCCCcEEEeecchHHHHHHHHHH---HHH-----------------------h-----
Confidence 3568999999999999999999 477999999999997654211 100 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCCh---h---hH---HHHHHHHHHhccCCcEEEEecCCc
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA---H---NI---VEYIEIISRILKDGGVWINLGPLL 337 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta---~---Ni---~~yi~~I~~~LKPGG~wIN~GPLl 337 (397)
-.++.++.||+.++.. -..++++|.|...| .|.- . .. .++|+.++++|||||++.-.
T Consensus 78 --------l~Nv~~~~~Da~~l~~-~~~~~~~d~v~i~f-p~P~~k~~h~k~Rl~~~~~l~~~~r~LkpgG~l~i~---- 143 (204)
T d2fcaa1 78 --------AQNVKLLNIDADTLTD-VFEPGEVKRVYLNF-SDPWPKKRHEKRRLTYSHFLKKYEEVMGKGGSIHFK---- 143 (204)
T ss_dssp --------CSSEEEECCCGGGHHH-HCCTTSCCEEEEES-CCCCCSGGGGGGSTTSHHHHHHHHHHHTTSCEEEEE----
T ss_pred --------ccCchhcccchhhhhc-ccCchhhhcccccc-ccccchhhhcchhhhHHHHHHHHHHhCCCCcEEEEE----
Confidence 1247889999876531 12368899886554 3321 1 10 37999999999999998631
Q ss_pred chhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 338 YHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 338 Yh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
.| ...+ .+.+.+++.+.|+....
T Consensus 144 ---TD--------~~~y-~~~~~~~~~~~~~~~~~ 166 (204)
T d2fcaa1 144 ---TD--------NRGL-FEYSLKSFSEYGLLLTY 166 (204)
T ss_dssp ---ES--------CHHH-HHHHHHHHHHHTCEEEE
T ss_pred ---EC--------ChHH-HHHHHHHHHHCCCcccc
Confidence 01 0111 25566677776776554
|
| >d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.05 E-value=1.8e-10 Score=105.42 Aligned_cols=117 Identities=16% Similarity=0.093 Sum_probs=80.8
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccc
Q 015966 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHS 248 (397)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~ 248 (397)
+-+...+.+.+... .+++.+||++|||+|+++..||++ ...|+|+|.+..|+..|+..+.+..- .
T Consensus 60 P~~~a~~le~L~~~-l~~g~~VLdiG~GsGy~ta~la~l~~~~g~V~~ie~~~~l~~~a~~~l~~~~~-~---------- 127 (224)
T d1i1na_ 60 PHMHAYALELLFDQ-LHEGAKALDVGSGSGILTACFARMVGCTGKVIGIDHIKELVDDSVNNVRKDDP-T---------- 127 (224)
T ss_dssp HHHHHHHHHHTTTT-SCTTCEEEEETCTTSHHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHHCT-H----------
T ss_pred hHHHHHHHHHHhhc-cCCCCeEEEecCCCCHHHHHHHHHhCCCceEEEEcCCHHHHHHHHHhccccCc-c----------
Confidence 34445555544211 136789999999999999999986 45899999999999988754432100 0
Q ss_pred ccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCc
Q 015966 249 NCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGG 328 (397)
Q Consensus 249 ~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG 328 (397)
.+. ..++.+..||..+.+. ..+.||+|+...-++..+ +.+.+.|||||
T Consensus 128 ------------~~~-----------~~~~~~~~gD~~~~~~---~~~~fD~I~~~~~~~~ip------~~l~~~LkpGG 175 (224)
T d1i1na_ 128 ------------LLS-----------SGRVQLVVGDGRMGYA---EEAPYDAIHVGAAAPVVP------QALIDQLKPGG 175 (224)
T ss_dssp ------------HHH-----------TSSEEEEESCGGGCCG---GGCCEEEEEECSBBSSCC------HHHHHTEEEEE
T ss_pred ------------ccc-----------ccceEEEEeecccccc---hhhhhhhhhhhcchhhcC------HHHHhhcCCCc
Confidence 000 1236778889876543 357899999876655443 35778999999
Q ss_pred EEEE
Q 015966 329 VWIN 332 (397)
Q Consensus 329 ~wIN 332 (397)
++|-
T Consensus 176 ~LV~ 179 (224)
T d1i1na_ 176 RLIL 179 (224)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9995
|
| >d2b25a1 c.66.1.13 (A:6-329) Hypothetical protein FLJ20628 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: tRNA(1-methyladenosine) methyltransferase-like domain: Hypothetical protein FLJ20628 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.01 E-value=3.8e-10 Score=109.15 Aligned_cols=131 Identities=16% Similarity=0.154 Sum_probs=87.4
Q ss_pred hhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-C--CeEEEEeCCHHHHHHHHhhhhcccccCcccccc
Q 015966 168 DQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-G--FISQGNEFSYYMMICSSFILNHTETAGEWNIYP 244 (397)
Q Consensus 168 ~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyP 244 (397)
+..|++=+..|..++.- .++.+||+.|||.|.++..||+. | -.|+++|++..|+..|+--+...... .
T Consensus 80 qiiypkD~~~Il~~l~i---~pG~rVLE~GtGsG~lt~~LAr~vg~~G~V~t~E~~~~~~~~A~~n~~~~~~~--~---- 150 (324)
T d2b25a1 80 AITFPKDINMILSMMDI---NPGDTVLEAGSGSGGMSLFLSKAVGSQGRVISFEVRKDHHDLAKKNYKHWRDS--W---- 150 (324)
T ss_dssp CCCCHHHHHHHHHHHTC---CTTCEEEEECCTTSHHHHHHHHHHCTTCEEEEEESSHHHHHHHHHHHHHHHHH--H----
T ss_pred cccccccHHHHHHHhCC---CCCCEEEEecccccHHHHHHHHHhCCCcEEEEecCCHHHHHHHHHHHHHhhhh--h----
Confidence 45788877777766542 47899999999999999999986 3 37999999999998887433211000 0
Q ss_pred ccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhc
Q 015966 245 WIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRIL 324 (397)
Q Consensus 245 fi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~L 324 (397)
.+... .....++.+..+|+.+... ......||+|+ ||. ++..++|+.++++|
T Consensus 151 ------------------~~~~~----~~~~~nv~~~~~di~~~~~-~~~~~~fD~V~----LD~-p~P~~~l~~~~~~L 202 (324)
T d2b25a1 151 ------------------KLSHV----EEWPDNVDFIHKDISGATE-DIKSLTFDAVA----LDM-LNPHVTLPVFYPHL 202 (324)
T ss_dssp ------------------TTTCS----SCCCCCEEEEESCTTCCC--------EEEEE----ECS-SSTTTTHHHHGGGE
T ss_pred ------------------hhhhh----hccccceeEEecchhhccc-ccCCCCcceEe----ecC-cCHHHHHHHHHHhc
Confidence 00000 0123458889999876532 12346899985 464 33457899999999
Q ss_pred cCCcEEEEecC
Q 015966 325 KDGGVWINLGP 335 (397)
Q Consensus 325 KPGG~wIN~GP 335 (397)
||||+++-+-|
T Consensus 203 KpGG~lv~~~P 213 (324)
T d2b25a1 203 KHGGVCAVYVV 213 (324)
T ss_dssp EEEEEEEEEES
T ss_pred cCCCEEEEEeC
Confidence 99999996433
|
| >d2frna1 c.66.1.47 (A:19-278) Hypothetical protein PH0793 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Met-10+ protein-like domain: Hypothetical protein PH0793 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=98.99 E-value=1.1e-09 Score=102.40 Aligned_cols=129 Identities=19% Similarity=0.176 Sum_probs=91.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|.++..+|++|. .|+|+|+++.++..++--+. .+
T Consensus 107 ~g~~VlD~~aG~G~~~l~~a~~~~~~V~avd~n~~a~~~~~~N~~----~n----------------------------- 153 (260)
T d2frna1 107 PDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIH----LN----------------------------- 153 (260)
T ss_dssp TTCEEEETTCTTTTTHHHHHHHTCCEEEEECCCHHHHHHHHHHHH----HT-----------------------------
T ss_pred CccEEEECcceEcHHHHHHHHhCCcEEEEecCCHHHHHHHHHHHH----Hh-----------------------------
Confidence 577999999999999999999985 89999999999876652111 00
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCC
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 347 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~ 347 (397)
...+.+.++.||.+++.. .+.||.|+.. ....-.++++...++|||||++. +|.+...
T Consensus 154 -----~l~~~v~~~~~D~~~~~~----~~~~D~Ii~~----~p~~~~~~l~~a~~~l~~gG~lh-----~~~~~~~---- 211 (260)
T d2frna1 154 -----KVEDRMSAYNMDNRDFPG----ENIADRILMG----YVVRTHEFIPKALSIAKDGAIIH-----YHNTVPE---- 211 (260)
T ss_dssp -----TCTTTEEEECSCTTTCCC----CSCEEEEEEC----CCSSGGGGHHHHHHHEEEEEEEE-----EEEEEEG----
T ss_pred -----CCCceEEEEEcchHHhcc----CCCCCEEEEC----CCCchHHHHHHHHhhcCCCCEEE-----EEecccc----
Confidence 112337889999988643 4789988753 22333478888999999999763 1222211
Q ss_pred CCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 348 DEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 348 ~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
+...+...+.+.++....||++...
T Consensus 212 -~~~~~~~~e~~~~~~~~~g~~v~~~ 236 (260)
T d2frna1 212 -KLMPREPFETFKRITKEYGYDVEKL 236 (260)
T ss_dssp -GGTTTTTHHHHHHHHHHTTCEEEEE
T ss_pred -ccchhhHHHHHHHHHHHcCCceEEE
Confidence 0112345688888999999998653
|
| >d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Sulfolobus tokodaii [TaxId: 111955]
Probab=98.98 E-value=1.3e-09 Score=100.24 Aligned_cols=109 Identities=19% Similarity=0.092 Sum_probs=78.6
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccccc
Q 015966 171 YKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (397)
Q Consensus 171 y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~S 250 (397)
.+.+...+.+.+.- +++.+||++|||+|+++..||+++..|+++|++..++..|+-.+..
T Consensus 55 ~p~~~a~ml~~L~l---~~g~~VLdIG~GsGy~ta~La~l~~~V~aiE~~~~~~~~A~~~~~~----------------- 114 (224)
T d1vbfa_ 55 ALNLGIFMLDELDL---HKGQKVLEIGTGIGYYTALIAEIVDKVVSVEINEKMYNYASKLLSY----------------- 114 (224)
T ss_dssp CHHHHHHHHHHTTC---CTTCEEEEECCTTSHHHHHHHHHSSEEEEEESCHHHHHHHHHHHTT-----------------
T ss_pred hhhhHHHHHHHhhh---cccceEEEecCCCCHHHHHHHHHhcccccccccHHHHHHHHHHHhc-----------------
Confidence 34444444444432 3778999999999999999999999999999999999877632210
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEE
Q 015966 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVW 330 (397)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~w 330 (397)
..++.++.||...-+. ..+.||+|+...-+... .+.+.+.|||||++
T Consensus 115 ------------------------~~nv~~~~~d~~~g~~---~~~pfD~Iiv~~a~~~i------p~~l~~qLk~GGrL 161 (224)
T d1vbfa_ 115 ------------------------YNNIKLILGDGTLGYE---EEKPYDRVVVWATAPTL------LCKPYEQLKEGGIM 161 (224)
T ss_dssp ------------------------CSSEEEEESCGGGCCG---GGCCEEEEEESSBBSSC------CHHHHHTEEEEEEE
T ss_pred ------------------------ccccccccCchhhcch---hhhhHHHHHhhcchhhh------hHHHHHhcCCCCEE
Confidence 0136788899766443 25789999865544433 24556889999999
Q ss_pred EE
Q 015966 331 IN 332 (397)
Q Consensus 331 IN 332 (397)
|-
T Consensus 162 V~ 163 (224)
T d1vbfa_ 162 IL 163 (224)
T ss_dssp EE
T ss_pred EE
Confidence 85
|
| >d1yzha1 c.66.1.53 (A:8-211) tRNA (guanine-N(7)-)-methyltransferase TrmB {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TrmB-like domain: tRNA (guanine-N(7)-)-methyltransferase TrmB species: Streptococcus pneumoniae [TaxId: 1313]
Probab=98.97 E-value=2.1e-09 Score=97.19 Aligned_cols=102 Identities=14% Similarity=0.170 Sum_probs=73.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
.+..|||+|||+|.++..+|++ ...+.|+|+|..|+..|. .++.+. .
T Consensus 31 ~~plvLdIGcG~G~~~~~lA~~~p~~~~iGid~~~~~v~~a~---~~~~~~-------------------------~--- 79 (204)
T d1yzha1 31 DNPIHVEVGSGKGAFVSGMAKQNPDINYIGIDIQKSVLSYAL---DKVLEV-------------------------G--- 79 (204)
T ss_dssp CCCEEEEESCTTSHHHHHHHHHCTTSEEEEEESCHHHHHHHH---HHHHHH-------------------------C---
T ss_pred CCCeEEEEeccCCHHHHHHHHHCCCCceEEEeccHHHHHHHH---Hhhhhh-------------------------c---
Confidence 4568999999999999999998 677999999999987554 111110 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhh-------H--HHHHHHHHHhccCCcEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHN-------I--VEYIEIISRILKDGGVWI 331 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~N-------i--~~yi~~I~~~LKPGG~wI 331 (397)
-.++.++.+|+.++.. -...+++|.|+ ++|.|.-+. + .++|+.++++|||||.++
T Consensus 80 --------l~Ni~~~~~da~~l~~-~~~~~~~~~i~-i~fPdPw~K~~h~krRl~~~~~l~~~~~~LkpgG~l~ 143 (204)
T d1yzha1 80 --------VPNIKLLWVDGSDLTD-YFEDGEIDRLY-LNFSDPWPKKRHEKRRLTYKTFLDTFKRILPENGEIH 143 (204)
T ss_dssp --------CSSEEEEECCSSCGGG-TSCTTCCSEEE-EESCCCCCSGGGGGGSTTSHHHHHHHHHHSCTTCEEE
T ss_pred --------cccceeeecCHHHHhh-hccCCceehhc-ccccccccchhhhhhhhhHHHHHHHHHHhCCCCcEEE
Confidence 1247888899877642 12357889886 455553110 0 479999999999999986
|
| >d2b3ta1 c.66.1.30 (A:2-275) N5-glutamine methyltransferase, HemK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Escherichia coli [TaxId: 562]
Probab=98.91 E-value=6.3e-09 Score=98.34 Aligned_cols=134 Identities=19% Similarity=0.220 Sum_probs=94.2
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
+++........ .+.+|||+|||+|-++..||+. ...|+|+|+|..++..|+.-.++.
T Consensus 97 lv~~~l~~~~~----~~~~vlDlGtGSG~I~i~la~~~p~~~v~avDis~~Al~~A~~Na~~~----------------- 155 (274)
T d2b3ta1 97 LVEQALARLPE----QPCRILDLGTGTGAIALALASERPDCEIIAVDRMPDAVSLAQRNAQHL----------------- 155 (274)
T ss_dssp HHHHHHHHSCS----SCCEEEEETCTTSHHHHHHHHHCTTSEEEEECSSHHHHHHHHHHHHHH-----------------
T ss_pred hhhhHhhhhcc----cccceeeeehhhhHHHHHHHhhCCcceeeeccchhHHHhHHHHHHHHh-----------------
Confidence 55544444432 5678999999999999999887 468999999999999887332110
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe-eccCCh--------------------
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC-FFIDTA-------------------- 310 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~-FFIDta-------------------- 310 (397)
. ..++.++.+|+.+... .++||+||++ =||.+.
T Consensus 156 ---------~-------------~~~v~~~~~d~~~~~~----~~~fDlIvsNPPYi~~~~~~~~~~v~~~eP~~AL~~g 209 (274)
T d2b3ta1 156 ---------A-------------IKNIHILQSDWFSALA----GQQFAMIVSNPPYIDEQDPHLQQGDVRFEPLTALVAA 209 (274)
T ss_dssp ---------T-------------CCSEEEECCSTTGGGT----TCCEEEEEECCCCBCTTCHHHHSSGGGSSCSTTTBCH
T ss_pred ---------C-------------cccceeeecccccccC----CCceeEEEecchhhhhhhhcccccccccchhhhcccc
Confidence 0 0137789999877432 4689999998 233321
Q ss_pred ----hhHHHHHHHHHHhccCCcEEEE-ecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 311 ----HNIVEYIEIISRILKDGGVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 311 ----~Ni~~yi~~I~~~LKPGG~wIN-~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
.-+...++...++|+|||.++- +|+ --.+.+.+++++.||..++
T Consensus 210 ~dGl~~~~~i~~~a~~~L~~~G~l~lEig~------------------~q~~~v~~~l~~~gf~~i~ 258 (274)
T d2b3ta1 210 DSGMADIVHIIEQSRNALVSGGFLLLEHGW------------------QQGEAVRQAFILAGYHDVE 258 (274)
T ss_dssp HHHTHHHHHHHHHHGGGEEEEEEEEEECCS------------------SCHHHHHHHHHHTTCTTCC
T ss_pred cccchHHHHHHHHHHHhcCCCCEEEEEECc------------------hHHHHHHHHHHHCCCCeEE
Confidence 1234567778899999999883 221 1247889999999997543
|
| >d1u2za_ c.66.1.31 (A:) Catalytic, N-terminal domain of histone methyltransferase Dot1l {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Catalytic, N-terminal domain of histone methyltransferase Dot1l domain: Catalytic, N-terminal domain of histone methyltransferase Dot1l species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.88 E-value=2.3e-09 Score=106.61 Aligned_cols=126 Identities=14% Similarity=0.178 Sum_probs=77.4
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
.+..+.+.+. ..++.+|||+|||+|+++..+|+. |. .|+|+|+|..|+..|+......... ... |
T Consensus 204 ~i~~Il~~l~---Lkpgd~fLDLGCG~G~~vl~aA~~~g~~~v~GIDiS~~~i~~Ak~~~~e~~~~--~~~--~------ 270 (406)
T d1u2za_ 204 FLSDVYQQCQ---LKKGDTFMDLGSGVGNCVVQAALECGCALSFGCEIMDDASDLTILQYEELKKR--CKL--Y------ 270 (406)
T ss_dssp HHHHHHHHTT---CCTTCEEEEESCTTSHHHHHHHHHHCCSEEEEEECCHHHHHHHHHHHHHHHHH--HHH--T------
T ss_pred HHHHHHHHhC---CCCCCEEEeCCCCCcHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHHhhh--hhh--h------
Confidence 4444444443 236789999999999999999977 65 7999999999999888554321110 000 0
Q ss_pred CCCcccCccccccCCCCCCCCCCCCccee-EecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEE
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSM-CGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVW 330 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~-~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~w 330 (397)
..+. ..+.+ ..++|.+.......-...|+|+..-++-. +++...|+.+++.|||||.+
T Consensus 271 ---------g~~~-----------~~~~~~~~~~f~~~~~~d~~~~~adVV~inn~~f~-~~l~~~L~ei~r~LKPGGrI 329 (406)
T d1u2za_ 271 ---------GMRL-----------NNVEFSLKKSFVDNNRVAELIPQCDVILVNNFLFD-EDLNKKVEKILQTAKVGCKI 329 (406)
T ss_dssp ---------TBCC-----------CCEEEEESSCSTTCHHHHHHGGGCSEEEECCTTCC-HHHHHHHHHHHTTCCTTCEE
T ss_pred ---------cccc-----------ccceeeeeechhhccccccccccceEEEEecccCc-hHHHHHHHHHHHhcCCCcEE
Confidence 0000 00111 34455432110001134577765444433 56889999999999999999
Q ss_pred EEe
Q 015966 331 INL 333 (397)
Q Consensus 331 IN~ 333 (397)
|..
T Consensus 330 Vs~ 332 (406)
T d1u2za_ 330 ISL 332 (406)
T ss_dssp EES
T ss_pred EEe
Confidence 974
|
| >d2esra1 c.66.1.46 (A:28-179) Putative methyltransferase SPy1538 {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methyltransferase SPy1538 species: Streptococcus pyogenes [TaxId: 1314]
Probab=98.83 E-value=4.4e-09 Score=90.09 Aligned_cols=99 Identities=21% Similarity=0.186 Sum_probs=71.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|.++.+.+.+|. .|+++|.+..++..++--+...
T Consensus 14 ~g~~vlDl~~GtG~~~iea~~rga~~v~~ve~~~~a~~~~~~n~~~~--------------------------------- 60 (152)
T d2esra1 14 NGGRVLDLFAGSGGLAIEAVSRGMSAAVLVEKNRKAQAIIQDNIIMT--------------------------------- 60 (152)
T ss_dssp CSCEEEEETCTTCHHHHHHHHTTCCEEEEECCCHHHHHHHHHHHHTT---------------------------------
T ss_pred CCCeEEEcCCccCHHHHHHHHhCcceeeeehhchhhhhhhhhhhhhc---------------------------------
Confidence 567999999999999999999997 7999999999987665222100
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCCh---hhHHHHHHHHH--HhccCCcEEE
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA---HNIVEYIEIIS--RILKDGGVWI 331 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta---~Ni~~yi~~I~--~~LKPGG~wI 331 (397)
....++.++.+|..++.. ...++||+| |+|+. ......++.|. ++|+|||+.|
T Consensus 61 -----~~~~~~~ii~~D~~~~l~--~~~~~fDiI----f~DPPy~~~~~~~~l~~i~~~~~L~~~g~ii 118 (152)
T d2esra1 61 -----KAENRFTLLKMEAERAID--CLTGRFDLV----FLDPPYAKETIVATIEALAAKNLLSEQVMVV 118 (152)
T ss_dssp -----TCGGGEEEECSCHHHHHH--HBCSCEEEE----EECCSSHHHHHHHHHHHHHHTTCEEEEEEEE
T ss_pred -----ccccchhhhccccccccc--cccccccee----EechhhccchHHHHHHHHHHCCCcCCCeEEE
Confidence 011237788899877432 235789998 44642 23445666665 4699999987
|
| >d2as0a2 c.66.1.51 (A:73-396) Hypothetical protein PH1915, middle and C-terminal domains {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein PH1915, middle and C-terminal domains species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.82 E-value=7.6e-09 Score=99.14 Aligned_cols=106 Identities=16% Similarity=0.105 Sum_probs=75.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+|||+|..+..+|+.|. .|+++|+|..++..++-.+.. +
T Consensus 145 ~g~~VLDl~~g~G~~si~~a~~ga~~V~~vD~s~~al~~a~~N~~~----n----------------------------- 191 (324)
T d2as0a2 145 PGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKL----N----------------------------- 191 (324)
T ss_dssp TTCEEEETTCTTTHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHH----T-----------------------------
T ss_pred CCCeeecccCcccchhhhhhhcCCcEEEeecCCHHHHHHHHHHHHH----c-----------------------------
Confidence 467999999999999999999986 799999999999877622210 0
Q ss_pred CCCCCCCCCcceeEecccccccC-CCCCCCCccEEEEe--eccCChh-------hHHHHHHHHHHhccCCcEEEE
Q 015966 268 HPASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTC--FFIDTAH-------NIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~-~~~~~~~fD~VvT~--FFIDta~-------Ni~~yi~~I~~~LKPGG~wIN 332 (397)
.+..++.++.||+.+... .+...++||+|+.- .|..... +..+.+....++|||||++|-
T Consensus 192 -----gl~~~~~~~~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~y~~l~~~a~~ll~pGG~lv~ 261 (324)
T d2as0a2 192 -----GVEDRMKFIVGSAFEEMEKLQKKGEKFDIVVLDPPAFVQHEKDLKAGLRAYFNVNFAGLNLVKDGGILVT 261 (324)
T ss_dssp -----TCGGGEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCSSGGGHHHHHHHHHHHHHHHHTTEEEEEEEEE
T ss_pred -----CCCccceeeechhhhhhHHHHhccCCCCchhcCCccccCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEE
Confidence 011236788999876421 01134789999973 4544332 234567788899999999984
|
| >d1ws6a1 c.66.1.46 (A:15-185) Methyltransferase TTHA0928 {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methyltransferase TTHA0928 species: Thermus thermophilus [TaxId: 274]
Probab=98.79 E-value=5.8e-09 Score=91.29 Aligned_cols=51 Identities=22% Similarity=0.158 Sum_probs=42.4
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHh
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSF 229 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~f 229 (397)
|.+.|...++ .+.+|||+|||+|.++.+.+.+|.+|+++|.|..|+..++.
T Consensus 31 lf~~l~~~~~-----~g~~vLDl~~G~G~~~i~a~~~ga~vv~vD~~~~a~~~~~~ 81 (171)
T d1ws6a1 31 LFDYLRLRYP-----RRGRFLDPFAGSGAVGLEAASEGWEAVLVEKDPEAVRLLKE 81 (171)
T ss_dssp HHHHHHHHCT-----TCCEEEEETCSSCHHHHHHHHTTCEEEEECCCHHHHHHHHH
T ss_pred HHHHhhcccc-----CCCeEEEeccccchhhhhhhhccchhhhcccCHHHHhhhhH
Confidence 3444554443 46699999999999999999999999999999999987763
|
| >d1r18a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.74 E-value=1e-08 Score=93.84 Aligned_cols=143 Identities=15% Similarity=0.096 Sum_probs=91.1
Q ss_pred hHHHHHHHHHHhc-------ccccCh---hHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-----
Q 015966 146 DKVRCIIRNIVRD-------WAAEGK---TERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL----- 210 (397)
Q Consensus 146 dkv~stL~q~~RD-------WS~eG~---~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~----- 210 (397)
++|.++++++-|+ |++.-- .-|..+-+.+...+.+.+... .+++.+||++|||+|+++.-||+.
T Consensus 28 ~~v~~a~~~vpRe~Fvp~~aY~D~~lpi~~~~~is~P~~~a~~l~~L~~~-l~~g~~VLeIGtGsGY~ta~la~l~g~~g 106 (223)
T d1r18a_ 28 DAVAQAMKETDRKHYSPRNPYMDAPQPIGGGVTISAPHMHAFALEYLRDH-LKPGARILDVGSGSGYLTACFYRYIKAKG 106 (223)
T ss_dssp HHHHHHHHTSCGGGTCSSCTTBSSCEEEETTEEECCHHHHHHHHHHTTTT-CCTTCEEEEESCTTSHHHHHHHHHHHHSC
T ss_pred HHHHHHHHhCCHHHcCCccccCCCCccccCCceeehhhhHHHHHHHHhhc-cCCCCeEEEecCCCCHHHHHHHHHhhhcc
Confidence 4566666666665 222110 012222233444455544211 136789999999999999988876
Q ss_pred ---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEeccccc
Q 015966 211 ---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVE 287 (397)
Q Consensus 211 ---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~e 287 (397)
+.+|+++|.+..++..|+..++..... ... ..++.+..||..+
T Consensus 107 ~~~~~~V~~iE~~~~l~~~a~~~l~~~~~~-----------------------~~~-----------~~nv~~~~~d~~~ 152 (223)
T d1r18a_ 107 VDADTRIVGIEHQAELVRRSKANLNTDDRS-----------------------MLD-----------SGQLLIVEGDGRK 152 (223)
T ss_dssp CCTTCEEEEEESCHHHHHHHHHHHHHHHHH-----------------------HHH-----------HTSEEEEESCGGG
T ss_pred CCcccEEEEEecCHHHHHHHHHhhhhcchh-----------------------hcC-----------ccEEEEEeccccc
Confidence 358999999999998887544321000 000 0237788899877
Q ss_pred ccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 288 VYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 288 ly~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
.+. ..+.||+|+...-++..+ +.+.+.|||||++|-
T Consensus 153 ~~~---~~~~fD~Iiv~~a~~~~p------~~l~~~Lk~gG~lV~ 188 (223)
T d1r18a_ 153 GYP---PNAPYNAIHVGAAAPDTP------TELINQLASGGRLIV 188 (223)
T ss_dssp CCG---GGCSEEEEEECSCBSSCC------HHHHHTEEEEEEEEE
T ss_pred ccc---cccceeeEEEEeechhch------HHHHHhcCCCcEEEE
Confidence 543 357899998776666544 246789999999986
|
| >d1wxxa2 c.66.1.51 (A:65-382) Hypothetical protein TTHA1280, middle and C-terminal domains {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein TTHA1280, middle and C-terminal domains species: Thermus thermophilus [TaxId: 274]
Probab=98.73 E-value=1.3e-08 Score=97.40 Aligned_cols=105 Identities=13% Similarity=0.004 Sum_probs=74.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||++||+|.++..+|+.|..|+++|+|..||..++..+.. + ++
T Consensus 145 ~g~rVLDl~~gtG~~s~~~a~g~~~V~~vD~s~~al~~a~~n~~~----n----------------------gl------ 192 (318)
T d1wxxa2 145 RGERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARL----N----------------------GL------ 192 (318)
T ss_dssp CEEEEEEETCTTTHHHHHHHHHEEEEEEEESCHHHHHHHHHHHHH----T----------------------TC------
T ss_pred CCCeeeccCCCCcHHHHHHHhcCCcEEeecchHHHHHHHHHHHHH----c----------------------CC------
Confidence 467999999999999999999889999999999999887733211 0 00
Q ss_pred CCCCCCCCcceeEecccccccC-CCCCCCCccEEEEe--eccCCh-------hhHHHHHHHHHHhccCCcEEEE
Q 015966 269 PASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTC--FFIDTA-------HNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~-~~~~~~~fD~VvT~--FFIDta-------~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
.++.++.+|..++.. .+...++||+|+.- .|.... ....+.+..+.++|||||++|-
T Consensus 193 -------~~~~~i~~d~~~~~~~~~~~~~~fD~Vi~DpP~~~~~~~~~~~~~~~~~~l~~~a~~lLkpGG~Lv~ 259 (318)
T d1wxxa2 193 -------GNVRVLEANAFDLLRRLEKEGERFDLVVLDPPAFAKGKKDVERAYRAYKEVNLRAIKLLKEGGILAT 259 (318)
T ss_dssp -------TTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCSCCSTTSHHHHHHHHHHHHHHHHHTEEEEEEEEE
T ss_pred -------CCcceeeccHHHHhhhhHhhhcCCCEEEEcCCccccchHHHHHHHHHHHHHHHHHHHHcCCCCEEEE
Confidence 126678888776421 01235789999964 232222 2233567788899999999984
|
| >d1wy7a1 c.66.1.32 (A:4-204) Hypothetical protein PH1948 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein PH1948 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=98.71 E-value=5.1e-08 Score=87.30 Aligned_cols=40 Identities=20% Similarity=0.013 Sum_probs=37.0
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~ 228 (397)
.+.+|||+|||+|.++.+++.+|. .|+|+|+|..++..++
T Consensus 46 ~g~~vLDlg~GtG~l~i~a~~~g~~~v~~vdi~~~~~~~a~ 86 (201)
T d1wy7a1 46 EGKVVADLGAGTGVLSYGALLLGAKEVICVEVDKEAVDVLI 86 (201)
T ss_dssp TTCEEEEETCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred CCCEEEECcCcchHHHHHHHHcCCCEEEEEcCcHHHHHHHH
Confidence 577999999999999999999996 7999999999998776
|
| >d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Chalcone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.68 E-value=1.2e-07 Score=87.52 Aligned_cols=141 Identities=16% Similarity=0.187 Sum_probs=94.7
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
..+.|.+.++.. ....+|||+|||+|.++..|+++ +-+++..|+-. ++ ...
T Consensus 68 ~~~~l~~~~~~f--~~~~~vlDiGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi-------~~~----------------- 120 (244)
T d1fp1d2 68 EMKRMLEIYTGF--EGISTLVDVGGGSGRNLELIISKYPLIKGINFDLPQ-VI-------ENA----------------- 120 (244)
T ss_dssp HHHHHHHHCCTT--TTCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-HH-------TTC-----------------
T ss_pred HHHHHHHhcccc--cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEecchh-hh-------hcc-----------------
Confidence 444555556532 25579999999999999999998 67788888743 21 100
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeecc--CChhhHHHHHHHHHHhccCCcE
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFI--DTAHNIVEYIEIISRILKDGGV 329 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFI--Dta~Ni~~yi~~I~~~LKPGG~ 329 (397)
....++.++.|||++-. | ..|+|+....+ ...++....|+.+++.|+|||.
T Consensus 121 ---------------------~~~~ri~~~~gd~~~~~--p----~~D~~~l~~vLh~~~de~~~~iL~~~~~aL~pgg~ 173 (244)
T d1fp1d2 121 ---------------------PPLSGIEHVGGDMFASV--P----QGDAMILKAVCHNWSDEKCIEFLSNCHKALSPNGK 173 (244)
T ss_dssp ---------------------CCCTTEEEEECCTTTCC--C----CEEEEEEESSGGGSCHHHHHHHHHHHHHHEEEEEE
T ss_pred ---------------------CCCCCeEEecCCccccc--c----cceEEEEehhhhhCCHHHHHHHHHHHHHHcCCCcE
Confidence 01134888999997632 2 34998866544 3445678999999999999998
Q ss_pred EEEecCCc------ch---h---hh-----ccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 330 WINLGPLL------YH---F---AD-----LYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 330 wIN~GPLl------Yh---~---~d-----~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
+|-.-.++ .. + -+ ..+ .-+.|.+|++++++++||+.++.
T Consensus 174 llI~e~v~~~~~~~~~~~~~~~~~d~~m~~~~~-----g~ert~~e~~~ll~~AGF~~v~v 229 (244)
T d1fp1d2 174 VIIVEFILPEEPNTSEESKLVSTLDNLMFITVG-----GRERTEKQYEKLSKLSGFSKFQV 229 (244)
T ss_dssp EEEEEEEECSSCCSSHHHHHHHHHHHHHHHHHS-----CCCEEHHHHHHHHHHTTCSEEEE
T ss_pred EEEEEEEecCCCCCchHHHHHHHHHHHHHhhCC-----CcCCCHHHHHHHHHHcCCCceEE
Confidence 88421110 00 0 00 011 23578999999999999998874
|
| >d1jg1a_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Protein-L-isoaspartyl O-methyltransferase domain: Protein-L-isoaspartyl O-methyltransferase species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.66 E-value=5e-08 Score=88.86 Aligned_cols=108 Identities=17% Similarity=0.065 Sum_probs=78.1
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
+...+.+.+. .+++.+||++|||+|.++..||+. |-.|+++|....++..|+-.+...
T Consensus 66 ~~a~ml~~L~---l~~g~~VLeIGsGsGY~taila~l~g~~V~~ie~~~~l~~~a~~~l~~~------------------ 124 (215)
T d1jg1a_ 66 MVAIMLEIAN---LKPGMNILEVGTGSGWNAALISEIVKTDVYTIERIPELVEFAKRNLERA------------------ 124 (215)
T ss_dssp HHHHHHHHHT---CCTTCCEEEECCTTSHHHHHHHHHHCSCEEEEESCHHHHHHHHHHHHHT------------------
T ss_pred hHHHHHHhhc---cCccceEEEecCCCChhHHHHHHhhCceeEEEeccHHHHHHHHHHHHHc------------------
Confidence 3344444443 236789999999999999999987 878999999999998887544321
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
. ..++.+..||..+-.. ..+.||+|+..--++..+ +.+.+.|||||++|-
T Consensus 125 --------g-------------~~nv~~~~gd~~~g~~---~~~pfD~Iiv~~a~~~ip------~~l~~qL~~gGrLv~ 174 (215)
T d1jg1a_ 125 --------G-------------VKNVHVILGDGSKGFP---PKAPYDVIIVTAGAPKIP------EPLIEQLKIGGKLII 174 (215)
T ss_dssp --------T-------------CCSEEEEESCGGGCCG---GGCCEEEEEECSBBSSCC------HHHHHTEEEEEEEEE
T ss_pred --------C-------------CceeEEEECccccCCc---ccCcceeEEeecccccCC------HHHHHhcCCCCEEEE
Confidence 0 1247789999876443 358899998765555433 234567999999995
|
| >d1ne2a_ c.66.1.32 (A:) Hypothetical protein Ta1320 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Ta1320-like domain: Hypothetical protein Ta1320 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.66 E-value=1.9e-08 Score=90.82 Aligned_cols=40 Identities=18% Similarity=0.116 Sum_probs=36.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~ 228 (397)
.+.+|||+|||+|.|+..++.+|. .|+|+|++..++..|+
T Consensus 48 ~Gk~VLDlGcGtG~l~i~a~~~ga~~V~~vDid~~a~~~ar 88 (197)
T d1ne2a_ 48 GGRSVIDAGTGNGILACGSYLLGAESVTAFDIDPDAIETAK 88 (197)
T ss_dssp BTSEEEEETCTTCHHHHHHHHTTBSEEEEEESCHHHHHHHH
T ss_pred CCCEEEEeCCCCcHHHHHHHHcCCCcccccccCHHHHHHHH
Confidence 578999999999999999999997 4999999999998776
|
| >d1af7a2 c.66.1.8 (A:92-284) Chemotaxis receptor methyltransferase CheR, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Chemotaxis receptor methyltransferase CheR, C-terminal domain domain: Chemotaxis receptor methyltransferase CheR, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=98.63 E-value=2.5e-08 Score=88.65 Aligned_cols=128 Identities=13% Similarity=0.113 Sum_probs=72.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc----------CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL----------GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQ 258 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~----------Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~q 258 (397)
+..|||..|||+|.-++.||.. -+.+.|.|+|..+|..|+-- +||--. .. .....
T Consensus 24 ~~lrIwsaGCstGeE~YSlA~~l~e~~~~~~~~~~I~atDi~~~~l~~A~~g-----------~y~~~~-~~---~~~~~ 88 (193)
T d1af7a2 24 GEYRVWSAAASTGEEPYSIAITLADALGMAPGRWKVFASDIDTEVLEKARSG-----------IYRLSE-LK---TLSPQ 88 (193)
T ss_dssp SCEEEEESCCTTTHHHHHHHHHHHHHHCSCTTSEEEEEEESCHHHHHHHHHT-----------EEEGGG-GT---TSCHH
T ss_pred CCeEEEEeCCCCchhHHHHHHHHHHhhhhcCCceEEEeecCChHHhhHhhcC-----------cccHHH-Hh---hhhHH
Confidence 5689999999999988777643 24699999999999877611 111000 00 00000
Q ss_pred cccccc-CCCCCCC------CCCCCcceeEecccccccCCCCCCCCccEEEEee---ccCChhhHHHHHHHHHHhccCCc
Q 015966 259 LRPVSI-PDIHPAS------AGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FIDTAHNIVEYIEIISRILKDGG 328 (397)
Q Consensus 259 lr~v~i-PDv~p~~------~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F---FIDta~Ni~~yi~~I~~~LKPGG 328 (397)
++.-.+ +...... ......+.+...+..+... ...+.||+|+|-+ |++. +...+.++.++++|||||
T Consensus 89 ~~~~yf~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~fDvI~CRNVLiYf~~-~~~~~vl~~l~~~L~pGG 165 (193)
T d1af7a2 89 QLQRYFMRGTGPHEGLVRVRQELANYVEFSSVNLLEKQY--NVPGPFDAIFCRNVMIYFDK-TTQEDILRRFVPLLKPDG 165 (193)
T ss_dssp HHHHHEEECCTTSCSEEEECHHHHTTEEEEECCTTCSSC--CCCCCEEEEEECSSGGGSCH-HHHHHHHHHHGGGEEEEE
T ss_pred HHhhceeecCCCccceeehHHHHHHHHHHhhhhcccccc--CCCCCccEEEeehhHHhcCH-HHHHHHHHHHHHHhCCCc
Confidence 000000 0000000 0001123445544443211 2357899999876 3443 346789999999999999
Q ss_pred EEEEecC
Q 015966 329 VWINLGP 335 (397)
Q Consensus 329 ~wIN~GP 335 (397)
++| +|+
T Consensus 166 ~L~-lG~ 171 (193)
T d1af7a2 166 LLF-AGH 171 (193)
T ss_dssp EEE-ECT
T ss_pred EEE-Eec
Confidence 988 453
|
| >d2cl5a1 c.66.1.1 (A:3-216) Catechol O-methyltransferase, COMT {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Catechol O-methyltransferase, COMT species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.58 E-value=1.8e-07 Score=84.60 Aligned_cols=140 Identities=19% Similarity=0.272 Sum_probs=93.6
Q ss_pred hHHHHHHHHHHh--cccccChhHHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCC
Q 015966 146 DKVRCIIRNIVR--DWAAEGKTERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFS 220 (397)
Q Consensus 146 dkv~stL~q~~R--DWS~eG~~ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S 220 (397)
+.|-.++.++++ +|.-.-..|-- .++..|.+.. +..+||++|||+|+-+..||+. |-+|+++|++
T Consensus 21 ~~vl~~~~~~~~~~~~~m~i~~~~G----~lL~~lv~~~------kpk~ILEiGt~~G~Sti~la~al~~~g~v~sid~~ 90 (214)
T d2cl5a1 21 QSVLEAIDTYCTQKEWAMNVGDAKG----QIMDAVIREY------SPSLVLELGAYCGYSAVRMARLLQPGARLLTMEMN 90 (214)
T ss_dssp HHHHHHHHHHHHHTCCCCSCHHHHH----HHHHHHHHHH------CCSEEEEECCTTSHHHHHHHTTCCTTCEEEEEESC
T ss_pred HHHHHHHHHHHhhcCCccccCHHHH----HHHHHHHHhh------CCCEEEEEccCchhHHHHHHHhCCCccEEEEEecc
Confidence 566667777764 56654444432 3666666543 4569999999999999999975 6799999999
Q ss_pred HHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCC---CCCCCC
Q 015966 221 YYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD---PSQVGA 297 (397)
Q Consensus 221 ~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~---~~~~~~ 297 (397)
..|+..|+..+..+ +..+++.++.||..++... ....+.
T Consensus 91 ~~~~~~a~~~~~~~--------------------------------------gl~~~i~l~~Gd~~e~l~~l~~~~~~~~ 132 (214)
T d2cl5a1 91 PDYAAITQQMLNFA--------------------------------------GLQDKVTILNGASQDLIPQLKKKYDVDT 132 (214)
T ss_dssp HHHHHHHHHHHHHH--------------------------------------TCGGGEEEEESCHHHHGGGHHHHSCCCC
T ss_pred HHHHHHHHHHHHHc--------------------------------------CCCccceeeeccccccccchhhcccccc
Confidence 99998776444321 1123478899998875321 012357
Q ss_pred ccEEEEeeccCChhh---HHHHHHHHHHhccCCcEEEEecCCcc
Q 015966 298 WDAVVTCFFIDTAHN---IVEYIEIISRILKDGGVWINLGPLLY 338 (397)
Q Consensus 298 fD~VvT~FFIDta~N---i~~yi~~I~~~LKPGG~wIN~GPLlY 338 (397)
||+| |||..++ ...++....++|||||+.| +-..+|
T Consensus 133 ~D~i----fiD~~~~~~~~~~~l~~~~~lLkpGGvIv-~Ddvl~ 171 (214)
T d2cl5a1 133 LDMV----FLDHWKDRYLPDTLLLEKCGLLRKGTVLL-ADNVIV 171 (214)
T ss_dssp EEEE----EECSCGGGHHHHHHHHHHTTCEEEEEEEE-ESCCCC
T ss_pred ccee----eecccccccccHHHHHHHhCccCCCcEEE-EeCcCC
Confidence 8877 5675433 2235777788999999877 333444
|
| >d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.57 E-value=2.1e-07 Score=85.22 Aligned_cols=144 Identities=17% Similarity=0.143 Sum_probs=90.7
Q ss_pred HHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCC
Q 015966 176 EELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSL 253 (397)
Q Consensus 176 ~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~ 253 (397)
..+.+.++.. ....+|||+|||.|.++..|+++ +-.+++.|+... + ...
T Consensus 70 ~~~~~~~~~~--~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~v-i-------~~~------------------- 120 (243)
T d1kyza2 70 KKILETYTGF--EGLKSLVDVGGGTGAVINTIVSKYPTIKGINFDLPHV-I-------EDA------------------- 120 (243)
T ss_dssp HHHHHHCCTT--SSCSEEEEETCTTSHHHHHHHHHCTTSEEEEEECTTT-T-------TTC-------------------
T ss_pred HHHHHhcccc--cCCcEEEEecCCCcHHHHHHHHHCCCCeEEEcccHHh-h-------hhc-------------------
Confidence 3444445432 14568999999999999999998 678888888541 1 000
Q ss_pred CcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--eccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 254 SDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 254 s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
....++.+..+||++-. | . -|+++.. +.....++....|+.+++.|||||.++
T Consensus 121 -------------------~~~~r~~~~~~d~~~~~--P--~--ad~~~l~~vlh~~~d~~~~~iL~~~~~al~pgg~~l 175 (243)
T d1kyza2 121 -------------------PSYPGVEHVGGDMFVSI--P--K--ADAVFMKWICHDWSDEHCLKFLKNCYEALPDNGKVI 175 (243)
T ss_dssp -------------------CCCTTEEEEECCTTTCC--C--C--CSCEECSSSSTTSCHHHHHHHHHHHHHHCCSSSCEE
T ss_pred -------------------ccCCceEEecccccccC--C--C--cceEEEEEEeecCCHHHHHHHHHHHHHhcCCCceEE
Confidence 01124788999997632 2 1 2443322 223355667889999999999999887
Q ss_pred EecCCcc--------h----hhhccC-CCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 332 NLGPLLY--------H----FADLYG-QEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 332 N~GPLlY--------h----~~d~~g-~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
-...++- . +-+..- .-.....+.|.+|++++++++||+.++-
T Consensus 176 i~d~~~~~~~~~~~~~~~~~~~d~~ml~~~~~g~ert~~e~~~ll~~AGf~~vkv 230 (243)
T d1kyza2 176 VAECILPVAPDSSLATKGVVHIDVIMLAHNPGGKERTQKEFEDLAKGAGFQGFKV 230 (243)
T ss_dssp EEECEECSSCCCCHHHHHHHHHHHHHHHHCSSCCCEEHHHHHHHHHHHCCSCEEE
T ss_pred EEEEEecCCCCCchhhHHHHHHHHHHHhhCCCCCcCCHHHHHHHHHHcCCCcEEE
Confidence 5322211 0 000000 0000134678999999999999998874
|
| >d2fpoa1 c.66.1.46 (A:10-192) Methylase YhhF {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Methylase YhhF species: Escherichia coli [TaxId: 562]
Probab=98.50 E-value=2.6e-07 Score=81.28 Aligned_cols=97 Identities=16% Similarity=0.075 Sum_probs=68.4
Q ss_pred CCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 190 PPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
+.+|||++||+|.++.|.+.+|. .|+++|.+..++.+++.-++...
T Consensus 44 ~~~vLDlfaGsG~~giealsrGa~~v~~VE~~~~a~~~~k~N~~~~~--------------------------------- 90 (183)
T d2fpoa1 44 DAQCLDCFAGSGALGLEALSRYAAGATLIEMDRAVSQQLIKNLATLK--------------------------------- 90 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHTT---------------------------------
T ss_pred hhhhhhhhccccceeeeEEecCcceeEEEEEeechhhHHHHHHhhcc---------------------------------
Confidence 46899999999999999999998 59999999999876663221100
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCCh---hhHHHHHHHHHH--hccCCcEEE
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA---HNIVEYIEIISR--ILKDGGVWI 331 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta---~Ni~~yi~~I~~--~LKPGG~wI 331 (397)
..+..++.+|..++.. ....+||+|+. |+. ......++.+.+ +|+|+|+.|
T Consensus 91 ------~~~~~ii~~d~~~~l~--~~~~~fDlIf~----DPPY~~~~~~~~l~~l~~~~~L~~~~iIi 146 (183)
T d2fpoa1 91 ------AGNARVVNSNAMSFLA--QKGTPHNIVFV----DPPFRRGLLEETINLLEDNGWLADEALIY 146 (183)
T ss_dssp ------CCSEEEECSCHHHHHS--SCCCCEEEEEE----CCSSSTTTHHHHHHHHHHTTCEEEEEEEE
T ss_pred ------ccceeeeeeccccccc--ccccccCEEEE----cCccccchHHHHHHHHHHCCCCCCCeEEE
Confidence 0125667788776543 23578999854 432 124455666654 699999888
|
| >d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Plant O-methyltransferase, C-terminal domain domain: Isoflavone O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.48 E-value=9e-07 Score=81.42 Aligned_cols=133 Identities=15% Similarity=0.159 Sum_probs=89.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
...+|||+|||+|.++..++++ +-++++.|+.. .+ ..+
T Consensus 80 ~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dlp~-vi-------~~~-------------------------------- 119 (244)
T d1fp2a2 80 GLESIVDVGGGTGTTAKIICETFPKLKCIVFDRPQ-VV-------ENL-------------------------------- 119 (244)
T ss_dssp TCSEEEEETCTTSHHHHHHHHHCTTCEEEEEECHH-HH-------TTC--------------------------------
T ss_pred CceEEEEecCCccHHHHHHHHhCCCCeEEEecCHH-HH-------HhC--------------------------------
Confidence 3468999999999999999998 78899999853 21 100
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhHHHHHHHHHHhccCC---cEEEEecCCc----
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNIVEYIEIISRILKDG---GVWINLGPLL---- 337 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni~~yi~~I~~~LKPG---G~wIN~GPLl---- 337 (397)
....+++++.|||.+- . ..+|+++....|. ..++..+.|+.+++.|+|| |++|-+..++
T Consensus 120 ------~~~~rv~~~~gD~f~~--~----p~aD~~~l~~vLHdw~d~~~~~iL~~~~~al~pgg~~~~lli~e~~~~~~~ 187 (244)
T d1fp2a2 120 ------SGSNNLTYVGGDMFTS--I----PNADAVLLKYILHNWTDKDCLRILKKCKEAVTNDGKRGKVTIIDMVIDKKK 187 (244)
T ss_dssp ------CCBTTEEEEECCTTTC--C----CCCSEEEEESCGGGSCHHHHHHHHHHHHHHHSGGGCCCEEEEEECEECTTT
T ss_pred ------cccCceEEEecCcccC--C----CCCcEEEEEeecccCChHHHHHHHHHHHHHcCcccCCcEEEEEEeecCCCC
Confidence 0123589999999762 1 2469988766543 5556778999999999998 5555322111
Q ss_pred -----chh---hhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 338 -----YHF---ADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 338 -----Yh~---~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
... -+..- .-...-+.|.+|++++++++||+.++-.
T Consensus 188 ~~~~~~~~~~~~dl~m-~~~~G~ert~~e~~~ll~~AGf~~~~i~ 231 (244)
T d1fp2a2 188 DENQVTQIKLLMDVNM-ACLNGKERNEEEWKKLFIEAGFQHYKIS 231 (244)
T ss_dssp SCHHHHHHHHHHHHHG-GGGTCCCEEHHHHHHHHHHTTCCEEEEE
T ss_pred CCchHHHHHHHHHHHH-HhCCCcCCCHHHHHHHHHHcCCceEEEE
Confidence 000 00000 0001235799999999999999998754
|
| >d2h00a1 c.66.1.54 (A:5-254) Methyltransferase 10 domain containing protein METT10D {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Methyltransferase 10 domain domain: Methyltransferase 10 domain containing protein METT10D species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.45 E-value=2.4e-06 Score=78.78 Aligned_cols=43 Identities=9% Similarity=0.018 Sum_probs=38.6
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhh
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFIL 231 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiL 231 (397)
+..+|||+|||+|-++.-||++ +..++|+|+|..++..|+..+
T Consensus 61 ~~~~~LDiGtGsg~I~~~l~~~~~~~~~~~~Di~~~al~~A~~N~ 105 (250)
T d2h00a1 61 TLRRGIDIGTGASCIYPLLGATLNGWYFLATEVDDMCFNYAKKNV 105 (250)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHCCEEEEEESCHHHHHHHHHHH
T ss_pred ccceEEEeCCCchHHHHHHHHhCCCccccceecCHHHHHHHHHHH
Confidence 5679999999999999999988 889999999999999888443
|
| >d2avda1 c.66.1.1 (A:44-262) COMT domain-containing protein 1, COMTD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: COMT domain-containing protein 1, COMTD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=3.8e-07 Score=83.01 Aligned_cols=118 Identities=17% Similarity=0.185 Sum_probs=85.7
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccc
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSN 249 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~ 249 (397)
.++..|.+.. +..+||++|||+|.-+..+|+. +-.++.+|.+..+...|+-.+..+
T Consensus 49 ~lL~~L~~~~------~~k~vLEiGt~~GyStl~~a~al~~~g~i~tie~~~~~~~~A~~~~~~a--------------- 107 (219)
T d2avda1 49 QLLANLARLI------QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQA--------------- 107 (219)
T ss_dssp HHHHHHHHHT------TCCEEEEECCTTSHHHHHHHTTSCTTCEEEEEESCSHHHHHHHHHHHHT---------------
T ss_pred HHHHHHHHcc------CCCeEEEEechhhHHHHHHHHhCCCCceEEEEeechhHHHHHHHHHHhc---------------
Confidence 4666676654 4679999999999999999975 458999999999998887554322
Q ss_pred cCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCC---CCCCCCccEEEEeeccC-ChhhHHHHHHHHHHhcc
Q 015966 250 CNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD---PSQVGAWDAVVTCFFID-TAHNIVEYIEIISRILK 325 (397)
Q Consensus 250 Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~---~~~~~~fD~VvT~FFID-ta~Ni~~yi~~I~~~LK 325 (397)
.....+.+..||..+.... ....+.||.| |+| ...+..+|++.+.++|+
T Consensus 108 -----------------------g~~~~i~~~~Gda~e~l~~~~~~~~~~~fD~i----fiD~dk~~y~~~~~~~~~lL~ 160 (219)
T d2avda1 108 -----------------------EAEHKIDLRLKPALETLDELLAAGEAGTFDVA----VVDADKENCSAYYERCLQLLR 160 (219)
T ss_dssp -----------------------TCTTTEEEEESCHHHHHHHHHHTTCTTCEEEE----EECSCSTTHHHHHHHHHHHEE
T ss_pred -----------------------CccceEEEEEeehhhcchhhhhhcccCCccEE----EEeCCHHHHHHHHHHHHHHhc
Confidence 1123478888987664210 1235789998 456 44567899999999999
Q ss_pred CCcEEEEecCCcch
Q 015966 326 DGGVWINLGPLLYH 339 (397)
Q Consensus 326 PGG~wIN~GPLlYh 339 (397)
|||++|- -..+|+
T Consensus 161 ~GGvii~-Dn~l~~ 173 (219)
T d2avda1 161 PGGILAV-LRVLWR 173 (219)
T ss_dssp EEEEEEE-ECCSGG
T ss_pred CCcEEEE-eCCccc
Confidence 9999993 234443
|
| >d2fhpa1 c.66.1.46 (A:1-182) Putative methylase EF2452 {Enterococcus faecalis [TaxId: 1351]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase EF2452 species: Enterococcus faecalis [TaxId: 1351]
Probab=98.36 E-value=2.4e-07 Score=81.68 Aligned_cols=101 Identities=21% Similarity=0.182 Sum_probs=71.8
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCe-EEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFI-SQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~-V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
.+.+|||++||+|.++.|.+.+|.. |+++|.+..++.+++.-+....
T Consensus 41 ~~~~vLDlfaGsG~~g~ea~srGa~~v~~ve~~~~a~~~~~~N~~~~~-------------------------------- 88 (182)
T d2fhpa1 41 DGGMALDLYSGSGGLAIEAVSRGMDKSICIEKNFAALKVIKENIAITK-------------------------------- 88 (182)
T ss_dssp SSCEEEETTCTTCHHHHHHHHTTCSEEEEEESCHHHHHHHHHHHHHHT--------------------------------
T ss_pred CCCEEEEcccccccccceeeecchhHHHHHHHHHHHHHHHHHHhhhhh--------------------------------
Confidence 4569999999999999999999984 9999999999887663222110
Q ss_pred CCCCCCCCCcceeEecccccccCC-CCCCCCccEEEEeeccCCh---hhHHHHHHHHHH--hccCCcEEE
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTCFFIDTA---HNIVEYIEIISR--ILKDGGVWI 331 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~-~~~~~~fD~VvT~FFIDta---~Ni~~yi~~I~~--~LKPGG~wI 331 (397)
...++.+..+|..++... .....+||+| |+|+. .+..+.++.|.+ +|+|||+.|
T Consensus 89 ------~~~~~~i~~~D~~~~l~~~~~~~~~fDlI----flDPPY~~~~~~~~l~~i~~~~~L~~~giIi 148 (182)
T d2fhpa1 89 ------EPEKFEVRKMDANRALEQFYEEKLQFDLV----LLDPPYAKQEIVSQLEKMLERQLLTNEAVIV 148 (182)
T ss_dssp ------CGGGEEEEESCHHHHHHHHHHTTCCEEEE----EECCCGGGCCHHHHHHHHHHTTCEEEEEEEE
T ss_pred ------cccccccccccchhhhhhhcccCCCcceE----EechhhhhhHHHHHHHHHHHCCCCCCCEEEE
Confidence 012367788887653210 0124689988 46753 346677888764 699999887
|
| >d1m6ya2 c.66.1.23 (A:2-114,A:216-294) TM0872, methyltransferase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermotoga maritima [TaxId: 2336]
Probab=98.35 E-value=5.2e-07 Score=80.59 Aligned_cols=121 Identities=15% Similarity=0.176 Sum_probs=83.8
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccC
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCN 251 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn 251 (397)
+++++.+.+.. .++..|||.+||+|.++..|+++ +..|.|+|.+..|+..|+..++.-
T Consensus 11 ll~evi~~l~~---~~~~~~lD~t~G~Gghs~~il~~~~~~~vi~~D~d~~~l~~a~~~l~~~----------------- 70 (192)
T d1m6ya2 11 MVREVIEFLKP---EDEKIILDCTVGEGGHSRAILEHCPGCRIIGIDVDSEVLRIAEEKLKEF----------------- 70 (192)
T ss_dssp THHHHHHHHCC---CTTCEEEETTCTTSHHHHHHHHHCTTCEEEEEESCHHHHHHHHHHTGGG-----------------
T ss_pred HHHHHHHhhCC---CCCCEEEEecCCCcHHHHHHHhcCCCCeEEEeechHHHHHHHHHhhccc-----------------
Confidence 34444444432 26789999999999999999887 568999999999999887544210
Q ss_pred CCCcccCccccccCCCCCCCCCCCCcceeEecccccccCC--CCCCCCccEEEEe-----eccCC----hhhHHHHHHHH
Q 015966 252 SLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD--PSQVGAWDAVVTC-----FFIDT----AHNIVEYIEII 320 (397)
Q Consensus 252 ~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~--~~~~~~fD~VvT~-----FFIDt----a~Ni~~yi~~I 320 (397)
..++.++.++|.++... ....++||.|+-- +=||. ..++.+.+..+
T Consensus 71 -----------------------~~r~~~~~~~f~~~~~~~~~~~~~~vdgIl~DlGvSs~Qld~~~r~~~~~~~~L~~a 127 (192)
T d1m6ya2 71 -----------------------SDRVSLFKVSYREADFLLKTLGIEKVDGILMDLGVSTYQLKGENRELENLKEFLKKA 127 (192)
T ss_dssp -----------------------TTTEEEEECCGGGHHHHHHHTTCSCEEEEEEECSCCHHHHHTSHTHHHHHHHHHHHG
T ss_pred -----------------------cccccchhHHHhhHHHHHHHcCCCCcceeeeccchhHhhhhhhhccchhHHHHHHHH
Confidence 12377888888764210 1124789998643 22332 24466789999
Q ss_pred HHhccCCcEEEEecCCcchh
Q 015966 321 SRILKDGGVWINLGPLLYHF 340 (397)
Q Consensus 321 ~~~LKPGG~wIN~GPLlYh~ 340 (397)
+++|||||.++. +.||.
T Consensus 128 ~~~Lk~gG~l~i---i~f~s 144 (192)
T d1m6ya2 128 EDLLNPGGRIVV---ISFHS 144 (192)
T ss_dssp GGGEEEEEEEEE---EESSH
T ss_pred HHhcCCCCeeee---ecccc
Confidence 999999999986 44664
|
| >d2b78a2 c.66.1.51 (A:69-385) Hypothetical protein SMu776, middle and C-terminal domains {Streptococcus mutans [TaxId: 1309]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Hypothetical protein SMu776, middle and C-terminal domains species: Streptococcus mutans [TaxId: 1309]
Probab=98.33 E-value=5.9e-07 Score=85.88 Aligned_cols=134 Identities=10% Similarity=0.070 Sum_probs=89.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
++.+|||+.||+|.++..+|..|. .|+++|+|..++..++.-++ .+ .+.
T Consensus 144 ~g~~VLdlf~~~G~~sl~aa~~ga~~V~~vD~s~~a~~~a~~N~~----~n----------------------~l~---- 193 (317)
T d2b78a2 144 AGKTVLNLFSYTAAFSVAAAMGGAMATTSVDLAKRSRALSLAHFE----AN----------------------HLD---- 193 (317)
T ss_dssp BTCEEEEETCTTTHHHHHHHHTTBSEEEEEESCTTHHHHHHHHHH----HT----------------------TCC----
T ss_pred CCCceeecCCCCcHHHHHHHhCCCceEEEecCCHHHHHHHHHHHH----Hh----------------------ccc----
Confidence 467999999999999999999998 69999999999987763221 01 000
Q ss_pred CCCCCCCCCcceeEecccccccCC-CCCCCCccEEEEe---e-----ccCCh-hhHHHHHHHHHHhccCCcEEEEecCCc
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTC---F-----FIDTA-HNIVEYIEIISRILKDGGVWINLGPLL 337 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~-~~~~~~fD~VvT~---F-----FIDta-~Ni~~yi~~I~~~LKPGG~wIN~GPLl 337 (397)
..++.++++|..++... ....++||+|+.- | -+..+ .+..+.++.+.++|||||++|-.-
T Consensus 194 -------~~~~~~i~~d~~~~l~~~~~~~~~fD~Ii~DPP~f~~~~~~~~~~~~~~~~L~~~a~~ll~pgG~l~~~s--- 263 (317)
T d2b78a2 194 -------MANHQLVVMDVFDYFKYARRHHLTYDIIIIDPPSFARNKKEVFSVSKDYHKLIRQGLEILSENGLIIAST--- 263 (317)
T ss_dssp -------CTTEEEEESCHHHHHHHHHHTTCCEEEEEECCCCC-----CCCCHHHHHHHHHHHHHHTEEEEEEEEEEE---
T ss_pred -------CcceEEEEccHHHHHHHHHhhcCCCCEEEEcChhhccchhHHHHHHHHHHHHHHHHHHHcCCCCEEEEEe---
Confidence 12377899998764210 1124689999862 2 12222 345578888999999999999411
Q ss_pred chhhhccCCCCCccccCCHHHHHHH----HHhCCCEEEEEe
Q 015966 338 YHFADLYGQEDEMSIELSLEDVKRV----ALHYGFEFEKEK 374 (397)
Q Consensus 338 Yh~~d~~g~~~~~~ieLS~EEl~~l----l~~~GFeii~e~ 374 (397)
. +-.++.++++.+ +.+.|..++...
T Consensus 264 ----c--------s~~~~~~~f~~~v~~a~~~~~~~~~~~~ 292 (317)
T d2b78a2 264 ----N--------AANMTVSQFKKQIEKGFGKQKHTYLDLQ 292 (317)
T ss_dssp ----C--------CTTSCHHHHHHHHHHHHTTCCCEEEEEE
T ss_pred ----C--------CccCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 1 124566666554 445677776544
|
| >d2igta1 c.66.1.51 (A:1-309) Putative methyltransferase Atu0340 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: hypothetical RNA methyltransferase domain: Putative methyltransferase Atu0340 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.31 E-value=2e-06 Score=82.27 Aligned_cols=106 Identities=13% Similarity=0.022 Sum_probs=72.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+|||+.||+|.++..+|+.|.+|+++|.|..++..|+-.+.. +. +.
T Consensus 132 ~~~rVLdlf~~tG~~sl~aa~~GA~V~~VD~s~~al~~a~~N~~l----n~----------------------~~----- 180 (309)
T d2igta1 132 RPLKVLNLFGYTGVASLVAAAAGAEVTHVDASKKAIGWAKENQVL----AG----------------------LE----- 180 (309)
T ss_dssp SCCEEEEETCTTCHHHHHHHHTTCEEEEECSCHHHHHHHHHHHHH----HT----------------------CT-----
T ss_pred CCCeEEEecCCCcHHHHHHHhCCCeEEEEeChHHHHHHHHHhhhh----hc----------------------cc-----
Confidence 567999999999999999999999999999999999887732210 00 00
Q ss_pred CCCCCCCCcceeEecccccccCC-CCCCCCccEEEEe---eccCC-------hhhHHHHHHHHHHhccCCcEEE
Q 015966 269 PASAGITEGFSMCGGDFVEVYSD-PSQVGAWDAVVTC---FFIDT-------AHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~-~~~~~~fD~VvT~---FFIDt-------a~Ni~~yi~~I~~~LKPGG~wI 331 (397)
...+.++++|..++... ....++||+||.- |=... ..++...++.+..+|+|||.++
T Consensus 181 ------~~~~~~i~~D~~~~l~~~~~~~~~fD~IilDPP~f~~~~~~~~~~~~~~~~~l~~~~~~ll~~~g~~l 248 (309)
T d2igta1 181 ------QAPIRWICEDAMKFIQREERRGSTYDIILTDPPKFGRGTHGEVWQLFDHLPLMLDICREILSPKALGL 248 (309)
T ss_dssp ------TSCEEEECSCHHHHHHHHHHHTCCBSEEEECCCSEEECTTCCEEEHHHHHHHHHHHHHHTBCTTCCEE
T ss_pred ------CCcEEEEeCCHHHhHHHHhhcCCCCCEEEECCCcccccccchhHHHHHHHHHHHHHHHHhcCCCCCEE
Confidence 11377889998764210 0124789999863 32221 1223344566778999998765
|
| >d2ih2a1 c.66.1.27 (A:21-243) DNA methylase TaqI, N-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: DNA methylase TaqI, N-terminal domain domain: DNA methylase TaqI, N-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.23 E-value=3.3e-06 Score=73.74 Aligned_cols=48 Identities=13% Similarity=0.118 Sum_probs=37.1
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHH
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYM 223 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~M 223 (397)
.|.+++.+.+.. .++.+|||||||+|.+...++++ ...+.|+|+...+
T Consensus 6 ~i~~~m~~l~~~---~~~~~IlDp~~G~G~fl~~~~~~~~~~~~i~g~ei~~~~ 56 (223)
T d2ih2a1 6 EVVDFMVSLAEA---PRGGRVLEPACAHGPFLRAFREAHGTAYRFVGVEIDPKA 56 (223)
T ss_dssp HHHHHHHHHCCC---CTTCEEEEETCTTCHHHHHHHHHHCSCSEEEEEESCTTT
T ss_pred HHHHHHHHhcCC---CCcCEEEECCCchHHHHHHHHHhccccceEEeeecCHHH
Confidence 467777777653 25679999999999998888654 4568999998754
|
| >d1mjfa_ c.66.1.17 (A:) Putative spermidine synthetase PF0127 (SpeE) {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Putative spermidine synthetase PF0127 (SpeE) species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=98.21 E-value=8.6e-07 Score=83.09 Aligned_cols=112 Identities=18% Similarity=0.213 Sum_probs=76.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
+..+||++|.|.|..+.++.+.+. +|+.+|+++.++.+|+-.+... ... +....
T Consensus 72 ~p~~vLiiG~G~G~~~~~~l~~~~~~v~~VEiD~~Vi~~a~~~f~~~------------~~~---------~~~~~---- 126 (276)
T d1mjfa_ 72 KPKRVLVIGGGDGGTVREVLQHDVDEVIMVEIDEDVIMVSKDLIKID------------NGL---------LEAML---- 126 (276)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSCCSEEEEEESCHHHHHHHHHHTCTT------------TTH---------HHHHH----
T ss_pred CCceEEEecCCchHHHHHHHHhCCceEEEecCCHHHHHHHHHhhhhc------------cch---------hhhhh----
Confidence 567999999999999999988765 6999999999998877322110 000 00000
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCC--hhhH--HHHHHHHHHhccCCcEEEE
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDT--AHNI--VEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDt--a~Ni--~~yi~~I~~~LKPGG~wIN 332 (397)
....+++.++.+|..++-. ..++||+|+.-.+-.. +..+ .++++.+.++|+|||++|.
T Consensus 127 ----~~~d~rv~i~~~Da~~~l~---~~~~yDvIi~D~~~~~~~~~~L~t~eF~~~~~~~L~~~Gv~v~ 188 (276)
T d1mjfa_ 127 ----NGKHEKAKLTIGDGFEFIK---NNRGFDVIIADSTDPVGPAKVLFSEEFYRYVYDALNNPGIYVT 188 (276)
T ss_dssp ----TTCCSSEEEEESCHHHHHH---HCCCEEEEEEECCCCC-----TTSHHHHHHHHHHEEEEEEEEE
T ss_pred ----ccCCCCceEEEChHHHHHh---ccCCCCEEEEeCCCCCCCcccccCHHHHHhhHhhcCCCceEEE
Confidence 0012358889999877533 2578999986554322 1112 4799999999999999994
|
| >d2f8la1 c.66.1.45 (A:2-329) Hypothetical protein Lmo1582 {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Hypothetical protein Lmo1582 species: Listeria monocytogenes [TaxId: 1639]
Probab=98.20 E-value=1.3e-06 Score=82.24 Aligned_cols=127 Identities=17% Similarity=0.126 Sum_probs=80.3
Q ss_pred CCCeEEEecCCCChhHHHHHHc----C---CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccc
Q 015966 189 SPPACLVPGAGLGRLALEISHL----G---FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRP 261 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~----G---f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~ 261 (397)
++.+|||||||+|.+...++.+ + ..+.|+|++..|+..|+..+... .
T Consensus 117 ~~~~vlDp~~GsG~~l~~~~~~l~~~~~~~~~~~g~di~~~~~~~a~~~~~~~--------------------------~ 170 (328)
T d2f8la1 117 KNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLISLALVGADLQ--------------------------R 170 (328)
T ss_dssp SEEEEEETTCTTSHHHHHHHHHHHTTSSCEEEEEEEESCHHHHHHHHHHHHHH--------------------------T
T ss_pred CCCEEEeCCCCcchhHHHHHHHHHhccCccceEEEecccHHHHHHHHHHHHHh--------------------------h
Confidence 5679999999999998887642 3 25889999999998776432110 0
Q ss_pred cccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--ecc--C-------------ChhhH-HHHHHHHHHh
Q 015966 262 VSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFI--D-------------TAHNI-VEYIEIISRI 323 (397)
Q Consensus 262 v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFI--D-------------ta~Ni-~~yi~~I~~~ 323 (397)
.......+|..... ...+||+|++. |-. . ...++ .-+++.+.+.
T Consensus 171 --------------~~~~~~~~d~~~~~----~~~~fD~vi~NPPy~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~~~~ 232 (328)
T d2f8la1 171 --------------QKMTLLHQDGLANL----LVDPVDVVISDLPVGYYPDDENAKTFELCREEGHSFAHFLFIEQGMRY 232 (328)
T ss_dssp --------------CCCEEEESCTTSCC----CCCCEEEEEEECCCSEESCHHHHTTSTTCCSSSCEEHHHHHHHHHHHT
T ss_pred --------------hhhhhhcccccccc----ccccccccccCCCCCCCccchhhhhcchhcccCcchHHHHHHHHHHHh
Confidence 01344556654432 24789999988 311 0 01111 2368889999
Q ss_pred ccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEE
Q 015966 324 LKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEK 372 (397)
Q Consensus 324 LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~ 372 (397)
|||||+.+-+-|--+- . .-+.+.+++.|.+. +.++.
T Consensus 233 Lk~~G~~~~I~p~~~l-~-----------~~~~~~lR~~L~~~-~~i~~ 268 (328)
T d2f8la1 233 TKPGGYLFFLVPDAMF-G-----------TSDFAKVDKFIKKN-GHIEG 268 (328)
T ss_dssp EEEEEEEEEEEEGGGG-G-----------STTHHHHHHHHHHH-EEEEE
T ss_pred cCCCCceEEEecCccc-c-----------CchhHHHHHHHHhC-CcEEE
Confidence 9999998876554221 1 12456678776664 45544
|
| >d1susa1 c.66.1.1 (A:21-247) Caffeoyl-CoA O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: COMT-like domain: Caffeoyl-CoA O-methyltransferase species: Alfalfa (Medicago sativa) [TaxId: 3879]
Probab=98.17 E-value=2.4e-06 Score=78.08 Aligned_cols=117 Identities=17% Similarity=0.221 Sum_probs=85.2
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccccc
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~S 250 (397)
++..|.+.. +..+||++|+|+|.-+..+|+. +-.++.+|.+..+...|+-..+++
T Consensus 50 ~L~~L~~~~------~~k~iLEiGT~~GyStl~la~al~~~g~v~tie~~~~~~~~A~~~~~~~---------------- 107 (227)
T d1susa1 50 FLSMLLKLI------NAKNTMEIGVYTGYSLLATALAIPEDGKILAMDINKENYELGLPVIKKA---------------- 107 (227)
T ss_dssp HHHHHHHHH------TCCEEEEECCGGGHHHHHHHHHSCTTCEEEEEESCCHHHHHHHHHHHHT----------------
T ss_pred HHHHHHHhc------CCCcEEEecchhhhhHHHHHhhCCCCcEEEEEeccchhHHHHHHHHHHh----------------
Confidence 666666543 4679999999999999999964 558999999999988877544322
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCC----CCCCCCccEEEEeeccCC-hhhHHHHHHHHHHhcc
Q 015966 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD----PSQVGAWDAVVTCFFIDT-AHNIVEYIEIISRILK 325 (397)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~----~~~~~~fD~VvT~FFIDt-a~Ni~~yi~~I~~~LK 325 (397)
+..+.+.++.||..+.... ....+.||.| |||. ..+-..|++.+.++|+
T Consensus 108 ----------------------g~~~~i~~~~g~a~~~L~~l~~~~~~~~~fD~i----FiDa~k~~y~~~~e~~~~ll~ 161 (227)
T d1susa1 108 ----------------------GVDHKIDFREGPALPVLDEMIKDEKNHGSYDFI----FVDADKDNYLNYHKRLIDLVK 161 (227)
T ss_dssp ----------------------TCGGGEEEEESCHHHHHHHHHHCGGGTTCBSEE----EECSCSTTHHHHHHHHHHHBC
T ss_pred ----------------------ccccceeeeehHHHHHHHHHHhccccCCceeEE----EeccchhhhHHHHHHHHhhcC
Confidence 1123478888998775421 0124689988 6773 3557899999999999
Q ss_pred CCcEEEEecCCcch
Q 015966 326 DGGVWINLGPLLYH 339 (397)
Q Consensus 326 PGG~wIN~GPLlYh 339 (397)
|||++|- -..+|+
T Consensus 162 ~gGiii~-DNvl~~ 174 (227)
T d1susa1 162 VGGVIGY-DNTLWN 174 (227)
T ss_dssp TTCCEEE-ETTTGG
T ss_pred CCcEEEE-ccCCCC
Confidence 9999993 234554
|
| >d1uira_ c.66.1.17 (A:) Spermidine synthase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermus thermophilus [TaxId: 274]
Probab=98.14 E-value=1.4e-06 Score=83.20 Aligned_cols=108 Identities=18% Similarity=0.159 Sum_probs=75.7
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
+..+||++|.|.|.++.++.+.. -+|+++|++..++.+++.-+ |.... + ..
T Consensus 77 ~pk~VLiiG~G~G~~~~~ll~~~~~~~v~~VEiD~~Vi~~a~~~f------------~~~~~--~---------~~---- 129 (312)
T d1uira_ 77 EPKRVLIVGGGEGATLREVLKHPTVEKAVMVDIDGELVEVAKRHM------------PEWHQ--G---------AF---- 129 (312)
T ss_dssp CCCEEEEEECTTSHHHHHHTTSTTCCEEEEEESCHHHHHHHHHHC------------HHHHT--T---------GG----
T ss_pred CcceEEEeCCCchHHHHHHHhcCCcceEEEecCCHHHHHHHHhcC------------ccccc--C---------cc----
Confidence 45799999999999999998773 48999999999998765211 10000 0 00
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee---cc-CC-hhhH--HHHHHHHHHhccCCcEEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF---FI-DT-AHNI--VEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F---FI-Dt-a~Ni--~~yi~~I~~~LKPGG~wIN 332 (397)
...++.++.+|.+++-. ...++||+|+.-. +. +. +..+ .++++.+.++|||||+++.
T Consensus 130 -------~d~rv~i~~~Da~~~l~--~~~~~yDvIi~D~~dp~~~~~~~~~L~t~eF~~~~~~~L~p~Gvlv~ 193 (312)
T d1uira_ 130 -------DDPRAVLVIDDARAYLE--RTEERYDVVIIDLTDPVGEDNPARLLYTVEFYRLVKAHLNPGGVMGM 193 (312)
T ss_dssp -------GCTTEEEEESCHHHHHH--HCCCCEEEEEEECCCCBSTTCGGGGGSSHHHHHHHHHTEEEEEEEEE
T ss_pred -------CCCceEEEEchHHHHhh--hcCCcccEEEEeCCCcccccchhhhhhhHHHHHHHHHhcCCCceEEE
Confidence 01247889999988543 2357899998543 22 22 2223 4899999999999999984
|
| >d1nv8a_ c.66.1.30 (A:) N5-glutamine methyltransferase, HemK {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N5-glutamine methyltransferase, HemK domain: N5-glutamine methyltransferase, HemK species: Thermotoga maritima [TaxId: 2336]
Probab=98.12 E-value=1.3e-05 Score=75.03 Aligned_cols=122 Identities=15% Similarity=0.302 Sum_probs=81.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcC-CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDI 267 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G-f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv 267 (397)
+..+|||.|||.|-++..+|+.. ..|+|+|+|...+..|+.-... +
T Consensus 110 ~~~~vld~g~GsG~i~~~la~~~~~~v~a~Dis~~Al~~A~~Na~~----~----------------------------- 156 (271)
T d1nv8a_ 110 GIKTVADIGTGSGAIGVSVAKFSDAIVFATDVSSKAVEIARKNAER----H----------------------------- 156 (271)
T ss_dssp TCCEEEEESCTTSHHHHHHHHHSSCEEEEEESCHHHHHHHHHHHHH----T-----------------------------
T ss_pred cccEEEEeeeeeehhhhhhhhcccceeeechhhhhHHHHHHHHHHH----c-----------------------------
Confidence 45689999999999999998774 5799999999999988732110 0
Q ss_pred CCCCCCCCCcceeEecccccccCCCCCCCCccEEEEee-ccCCh------------------hh-HHHHHHHHHHhccCC
Q 015966 268 HPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCF-FIDTA------------------HN-IVEYIEIISRILKDG 327 (397)
Q Consensus 268 ~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~F-FIDta------------------~N-i~~yi~~I~~~LKPG 327 (397)
.....+.+..+|+.+... ...+.||+||++= ||.+. .| +.-|-+-+.++|+||
T Consensus 157 -----~~~~~~~i~~~~~~~~~~--~~~~~fDlIVsNPPYI~~~~~l~~~~~~EP~~AL~gg~dGl~~~r~i~~~~L~~~ 229 (271)
T d1nv8a_ 157 -----GVSDRFFVRKGEFLEPFK--EKFASIEMILSNPPYVKSSAHLPKDVLFEPPEALFGGEDGLDFYREFFGRYDTSG 229 (271)
T ss_dssp -----TCTTSEEEEESSTTGGGG--GGTTTCCEEEECCCCBCGGGSCTTSCCCSCHHHHBCTTTSCHHHHHHHHHCCCTT
T ss_pred -----CCCceeEEeecccccccc--cccCcccEEEEcccccCcccccceeeeeccccccccccchHHHHHHHHHHhcCCC
Confidence 011225677888877543 2347899999882 22211 11 333555577999999
Q ss_pred cEEEE-ecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCC
Q 015966 328 GVWIN-LGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGF 368 (397)
Q Consensus 328 G~wIN-~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GF 368 (397)
|+++- +|+- -.+++++++++.||
T Consensus 230 G~l~~Eig~~------------------Q~~~v~~l~~~~g~ 253 (271)
T d1nv8a_ 230 KIVLMEIGED------------------QVEELKKIVSDTVF 253 (271)
T ss_dssp CEEEEECCTT------------------CHHHHTTTSTTCEE
T ss_pred CEEEEEECHH------------------HHHHHHHHHHhCCE
Confidence 98773 3321 14567777778887
|
| >d2o07a1 c.66.1.17 (A:16-300) Spermidine synthase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.02 E-value=7.1e-06 Score=77.32 Aligned_cols=107 Identities=20% Similarity=0.211 Sum_probs=75.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
...+||++|-|.|..+.++.+. .-+|+.+|+...++.+|+.-+.. .+. . +
T Consensus 78 ~pk~vLiiGgG~G~~~~~~l~~~~~~~v~~vEiD~~Vv~~a~~~~~~------------~~~------------~--~-- 129 (285)
T d2o07a1 78 NPRKVLIIGGGDGGVLREVVKHPSVESVVQCEIDEDVIQVSKKFLPG------------MAI------------G--Y-- 129 (285)
T ss_dssp SCCEEEEEECTTSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHH------------HHG------------G--G--
T ss_pred CcCeEEEeCCCchHHHHHHHHcCCcceeeeccCCHHHHHHHHhhchh------------hcc------------c--c--
Confidence 5679999999999999999987 35899999999999888633211 000 0 0
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhH--HHHHHHHHHhccCCcEEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNI--VEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni--~~yi~~I~~~LKPGG~wIN 332 (397)
...++.++.+|.+++-. ...++||+|+.-.+-+ .+..+ .++++.+++.|+|||+++.
T Consensus 130 -------~d~rv~i~~~Da~~~l~--~~~~~yDvIi~D~~~p~~~~~~L~t~eF~~~~~~~L~~~Gi~v~ 190 (285)
T d2o07a1 130 -------SSSKLTLHVGDGFEFMK--QNQDAFDVIITDSSDPMGPAESLFKESYYQLMKTALKEDGVLCC 190 (285)
T ss_dssp -------GCTTEEEEESCHHHHHH--TCSSCEEEEEEECC-----------CHHHHHHHHHEEEEEEEEE
T ss_pred -------CCCCceEEEccHHHHHh--cCCCCCCEEEEcCCCCCCcccccccHHHHHHHHHhcCCCCeEEE
Confidence 01247889999887543 2357899999765421 12222 2689999999999999994
|
| >d1inla_ c.66.1.17 (A:) Spermidine synthase {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thermotoga maritima [TaxId: 2336]
Probab=98.00 E-value=7.7e-06 Score=77.53 Aligned_cols=107 Identities=14% Similarity=0.093 Sum_probs=75.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
...+||++|.|.|.++.++.+.. -.|+++|+.+.++.+|+.-+ |..+. ...
T Consensus 89 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEIDp~Vi~~a~~~~------------~~~~~------------~~~--- 141 (295)
T d1inla_ 89 NPKKVLIIGGGDGGTLREVLKHDSVEKAILCEVDGLVIEAARKYL------------KQTSC------------GFD--- 141 (295)
T ss_dssp SCCEEEEEECTTCHHHHHHTTSTTCSEEEEEESCHHHHHHHHHHC------------HHHHG------------GGG---
T ss_pred CCceEEEecCCchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHH------------Hhhcc------------ccc---
Confidence 45799999999999999999873 57999999999998876322 11000 000
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC---ChhhH--HHHHHHHHHhccCCcEEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID---TAHNI--VEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID---ta~Ni--~~yi~~I~~~LKPGG~wIN 332 (397)
.+++.++.+|.+++-. ..+++||+|+.-.+-. .+..+ .++++.+++.|+|||+++.
T Consensus 142 --------d~rv~v~~~Da~~~l~--~~~~~yDvIi~D~~dp~~~~~~~L~t~efy~~~~~~L~~~Gi~v~ 202 (295)
T d1inla_ 142 --------DPRAEIVIANGAEYVR--KFKNEFDVIIIDSTDPTAGQGGHLFTEEFYQACYDALKEDGVFSA 202 (295)
T ss_dssp --------CTTEEEEESCHHHHGG--GCSSCEEEEEEEC----------CCSHHHHHHHHHHEEEEEEEEE
T ss_pred --------CCCcEEEhhhHHHHHh--cCCCCCCEEEEcCCCCCcCchhhhccHHHHHHHHhhcCCCcEEEE
Confidence 1247888999888543 2457899998654421 11122 4799999999999999995
|
| >d2b2ca1 c.66.1.17 (A:3-314) Spermidine synthase {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Caenorhabditis elegans [TaxId: 6239]
Probab=97.98 E-value=7.7e-06 Score=78.21 Aligned_cols=107 Identities=20% Similarity=0.257 Sum_probs=74.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
...+||++|-|.|.++.++.+.. -.|+.+|+...++.+|+.-+ |..+. ...
T Consensus 106 ~pk~VLIiGgG~G~~~rellk~~~v~~v~~VEID~~Vv~~a~~~~------------~~~~~------------~~~--- 158 (312)
T d2b2ca1 106 DPKRVLIIGGGDGGILREVLKHESVEKVTMCEIDEMVIDVAKKFL------------PGMSC------------GFS--- 158 (312)
T ss_dssp SCCEEEEESCTTSHHHHHHTTCTTCCEEEEECSCHHHHHHHHHHC------------TTTSG------------GGG---
T ss_pred CCCeEEEeCCCchHHHHHHHHcCCcceEEEEcccHHHHHHHHhhc------------hhhcc------------ccC---
Confidence 45699999999999999999864 47999999999998776322 11100 000
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhH--HHHHHHHHHhccCCcEEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNI--VEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni--~~yi~~I~~~LKPGG~wIN 332 (397)
..++.++.+|.+++-. ...++||+|+.-.+-. .+..+ .++++.++++|+|||+++.
T Consensus 159 --------dprv~i~i~Da~~~l~--~~~~~yDvII~D~~dp~~~~~~L~t~eFy~~~~~~L~~~Gi~v~ 218 (312)
T d2b2ca1 159 --------HPKLDLFCGDGFEFLK--NHKNEFDVIITDSSDPVGPAESLFGQSYYELLRDALKEDGILSS 218 (312)
T ss_dssp --------CTTEEEECSCHHHHHH--HCTTCEEEEEECCC-------------HHHHHHHHEEEEEEEEE
T ss_pred --------CCCeEEEEchHHHHHH--hCCCCCCEEEEcCCCCCCcchhhhhHHHHHHHHhhcCCCcEEEE
Confidence 1347888999887543 2357899999755422 12222 3689999999999999996
|
| >d2okca1 c.66.1.45 (A:9-433) Type I restriction enzyme StySJI M protein {Bacteroides thetaiotaomicron [TaxId: 818]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: Type I restriction enzyme StySJI M protein species: Bacteroides thetaiotaomicron [TaxId: 818]
Probab=97.96 E-value=2.9e-05 Score=75.87 Aligned_cols=119 Identities=18% Similarity=0.285 Sum_probs=76.2
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---------------CCeEEEEeCCHHHHHHHHhhhhccccc
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---------------GFISQGNEFSYYMMICSSFILNHTETA 237 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---------------Gf~V~GnD~S~~ML~~s~fiLn~~~~~ 237 (397)
.|++.+-+.+.. ..+.+||||+||+|.+..+++++ ...+.|.|++..+...|+..+-
T Consensus 149 ~Iv~~mv~ll~~---~~~~~IlDPacGsG~fL~~a~~~~~~~~~~~~~~~~~~~~~l~g~E~~~~~~~la~~n~~----- 220 (425)
T d2okca1 149 PLIQAMVDCINP---QMGETVCDPACGTGGFLLTAYDYMKGQSASKEKRDFLRDKALHGVDNTPLVVTLASMNLY----- 220 (425)
T ss_dssp HHHHHHHHHHCC---CTTCCEEETTCTTCHHHHHHHHHHHTCC-CCHHHHHHHHTTEEEEESCHHHHHHHHHHHH-----
T ss_pred hhhHhhheeccC---cccceeeccccccCccHHHHHHHHHhhccchhhhhhhhhhhhhhhhccHHHHHHHHhhhh-----
Confidence 355555554432 25679999999999998877664 1358899999999887763221
Q ss_pred CccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--e----------
Q 015966 238 GEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--F---------- 305 (397)
Q Consensus 238 ~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--F---------- 305 (397)
+ | .+. .....+..+|+.+... ...||+|+++ |
T Consensus 221 ----l----~-------------g~~-----------~~~~~i~~~d~l~~~~----~~~fD~Ii~NPPfg~~~~~~~~~ 264 (425)
T d2okca1 221 ----L----H-------------GIG-----------TDRSPIVCEDSLEKEP----STLVDVILANPPFGTRPAGSVDI 264 (425)
T ss_dssp ----H----T-------------TCC-----------SSCCSEEECCTTTSCC----SSCEEEEEECCCSSCCCTTCCCC
T ss_pred ----h----c-------------CCc-----------cccceeecCchhhhhc----ccccceEEecCCCCCCccccchh
Confidence 0 0 000 0013456677765432 4689999987 3
Q ss_pred -----ccCChhhHHHHHHHHHHhccCCcEEEEecC
Q 015966 306 -----FIDTAHNIVEYIEIISRILKDGGVWINLGP 335 (397)
Q Consensus 306 -----FIDta~Ni~~yi~~I~~~LKPGG~wIN~GP 335 (397)
+..+...-..++..+.+.|||||..+-+-|
T Consensus 265 ~~~~~~~~~~~~~~~Fi~~~~~~Lk~~G~~~iI~p 299 (425)
T d2okca1 265 NRPDFYVETKNNQLNFLQHMMLMLKTGGRAAVVLP 299 (425)
T ss_dssp CCTTSSSCCSCHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred hhhhcccccccHHHHHHHHHHHhcCCCCeEEEEec
Confidence 122222234689999999999998886544
|
| >d1xj5a_ c.66.1.17 (A:) Spermidine synthase {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.94 E-value=1.4e-05 Score=75.37 Aligned_cols=108 Identities=20% Similarity=0.258 Sum_probs=76.4
Q ss_pred CCCeEEEecCCCChhHHHHHHc-CC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL-GF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
+..+||++|-|.|.++.++.+. +. .|+.+|+...++.+++.-+..... ..
T Consensus 80 ~pk~VLiiGgG~G~~~r~~l~~~~~~~i~~VEiD~~Vi~~~~~~f~~~~~------------------------~~---- 131 (290)
T d1xj5a_ 80 NPKKVLVIGGGDGGVLREVARHASIEQIDMCEIDKMVVDVSKQFFPDVAI------------------------GY---- 131 (290)
T ss_dssp CCCEEEEETCSSSHHHHHHTTCTTCCEEEEEESCHHHHHHHHHHCHHHHG------------------------GG----
T ss_pred CCcceEEecCCchHHHHHHHhcccceeeEEecCCHHHHHHHHHhchhhhc------------------------cc----
Confidence 4579999999999999999987 43 799999999999887632211000 00
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--ChhhH--HHHHHHHHHhccCCcEEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHNI--VEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~Ni--~~yi~~I~~~LKPGG~wIN 332 (397)
...++.++.+|.++.... ..+++||+|+.-.|-. .+..+ .++++.++++|+|||+++.
T Consensus 132 -------~~~r~~i~~~Da~~~l~~-~~~~~yDvIi~D~~dp~~~~~~L~t~eF~~~~~~~L~~~Gi~v~ 193 (290)
T d1xj5a_ 132 -------EDPRVNLVIGDGVAFLKN-AAEGSYDAVIVDSSDPIGPAKELFEKPFFQSVARALRPGGVVCT 193 (290)
T ss_dssp -------GSTTEEEEESCHHHHHHT-SCTTCEEEEEECCCCTTSGGGGGGSHHHHHHHHHHEEEEEEEEE
T ss_pred -------cCCCcEEEEccHHHHHhh-ccccCccEEEEcCCCCCCcchhhCCHHHHHHHHHhcCCCcEEEE
Confidence 013478888997775421 1246899998655421 12222 3799999999999999995
|
| >d1qama_ c.66.1.24 (A:) rRNA adenine dimethylase {Bacillus subtilis, Ermc' [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Bacillus subtilis, Ermc' [TaxId: 1423]
Probab=97.85 E-value=4.1e-05 Score=69.86 Aligned_cols=52 Identities=12% Similarity=0.127 Sum_probs=42.3
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (397)
+++.+.+... ..++.+||++|||+|.|+..|+++|..|+|+|++..|....+
T Consensus 9 i~~~iv~~~~---~~~~d~VlEIGpG~G~LT~~Ll~~~~~v~avE~D~~l~~~l~ 60 (235)
T d1qama_ 9 NIDKIMTNIR---LNEHDNIFEIGSGKGHFTLELVQRCNFVTAIEIDHKLCKTTE 60 (235)
T ss_dssp HHHHHHTTCC---CCTTCEEEEECCTTSHHHHHHHHHSSEEEEECSCHHHHHHHH
T ss_pred HHHHHHHhcC---CCCCCeEEEECCCchHHHHHHHhCcCceEEEeeccchHHHHH
Confidence 5555555442 236789999999999999999999999999999999976543
|
| >d2ifta1 c.66.1.46 (A:11-193) Putative methylase HI0767 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhhF-like domain: Putative methylase HI0767 species: Haemophilus influenzae [TaxId: 727]
Probab=97.84 E-value=3.9e-05 Score=66.89 Aligned_cols=101 Identities=18% Similarity=0.162 Sum_probs=65.9
Q ss_pred CCeEEEecCCCChhHHHHHHcCC-eEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 190 PPACLVPGAGLGRLALEISHLGF-ISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf-~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
+.+|||+-||+|.++.|.+.+|. .|+.+|.+...+.+.+-.+... .+.
T Consensus 44 ~~~vLDlFaGsG~~glEalSRGA~~v~fVE~~~~a~~~ik~Ni~~l----------------------------~~~--- 92 (183)
T d2ifta1 44 QSECLDGFAGSGSLGFEALSRQAKKVTFLELDKTVANQLKKNLQTL----------------------------KCS--- 92 (183)
T ss_dssp TCEEEETTCTTCHHHHHHHHTTCSEEEEECSCHHHHHHHHHHHHHT----------------------------TCC---
T ss_pred cceEeecccCccceeeeeeeecceeeEEeecccchhhhHhhHHhhh----------------------------ccc---
Confidence 45899999999999999999998 7999999999876544222111 000
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCCh---hhHHHHHHHHHH--hccCCcEEE
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTA---HNIVEYIEIISR--ILKDGGVWI 331 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta---~Ni~~yi~~I~~--~LKPGG~wI 331 (397)
.....+...|..+.........+||+| |+|+. ......++.+.. +|+++|+.|
T Consensus 93 ------~~~~~~~~~d~~~~l~~~~~~~~fDlI----FlDPPY~~~~~~~~l~~l~~~~~L~~~~lii 150 (183)
T d2ifta1 93 ------SEQAEVINQSSLDFLKQPQNQPHFDVV----FLDPPFHFNLAEQAISLLCENNWLKPNALIY 150 (183)
T ss_dssp ------TTTEEEECSCHHHHTTSCCSSCCEEEE----EECCCSSSCHHHHHHHHHHHTTCEEEEEEEE
T ss_pred ------ccccccccccccccccccccCCcccEE----EechhHhhhhHHHHHHHHHHhCCcCCCcEEE
Confidence 011344555544433222234579988 45643 224566776654 699999888
|
| >d1iy9a_ c.66.1.17 (A:) Spermidine synthase {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Spermidine synthase domain: Spermidine synthase species: Bacillus subtilis [TaxId: 1423]
Probab=97.80 E-value=1.8e-05 Score=73.89 Aligned_cols=107 Identities=19% Similarity=0.156 Sum_probs=76.1
Q ss_pred CCCeEEEecCCCChhHHHHHHc-C-CeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL-G-FISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~-G-f~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
+..+||++|-|.|..+.++.+. + -.|+.+|+.+.++.+|+.-+ |... +.
T Consensus 75 ~p~~vLiiGgG~G~~~~~~l~~~~~~~i~~VEID~~Vi~~a~~~~------------~~~~---~~-------------- 125 (274)
T d1iy9a_ 75 NPEHVLVVGGGDGGVIREILKHPSVKKATLVDIDGKVIEYSKKFL------------PSIA---GK-------------- 125 (274)
T ss_dssp SCCEEEEESCTTCHHHHHHTTCTTCSEEEEEESCHHHHHHHHHHC------------HHHH---TT--------------
T ss_pred CcceEEecCCCCcHHHHHHHhcCCcceEEEecCCHHHHHHHHHhC------------hhhc---cc--------------
Confidence 4579999999999999999986 4 48999999999998877332 1100 00
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccC--Chhh--HHHHHHHHHHhccCCcEEEE
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFID--TAHN--IVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFID--ta~N--i~~yi~~I~~~LKPGG~wIN 332 (397)
....++.++.+|.++.-. ..+++||+|+.-.+-. .+.+ -.++++.+.++|+|||+++.
T Consensus 126 ------~~d~r~~i~~~D~~~~l~--~~~~~yDvIi~D~~~p~~~~~~L~t~eFy~~~~~~L~~~Gv~v~ 187 (274)
T d1iy9a_ 126 ------LDDPRVDVQVDDGFMHIA--KSENQYDVIMVDSTEPVGPAVNLFTKGFYAGIAKALKEDGIFVA 187 (274)
T ss_dssp ------TTSTTEEEEESCSHHHHH--TCCSCEEEEEESCSSCCSCCCCCSTTHHHHHHHHHEEEEEEEEE
T ss_pred ------ccCCCeEEEechHHHHHh--hcCCCCCEEEEcCCCCCCcchhhccHHHHHHHHhhcCCCceEEE
Confidence 001247888999887543 2357899998653311 1111 23899999999999999995
|
| >d1yuba_ c.66.1.24 (A:) rRNA adenine dimethylase {Streptococcus pneumoniae, Ermam [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: rRNA adenine dimethylase species: Streptococcus pneumoniae, Ermam [TaxId: 1313]
Probab=97.76 E-value=6.3e-06 Score=76.05 Aligned_cols=78 Identities=13% Similarity=0.175 Sum_probs=57.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++.+||++|||+|.|+..|+++|..|+|+|++..|+..++ + +++
T Consensus 29 ~~d~VLEIGpG~G~LT~~L~~~~~~v~aIE~D~~l~~~l~-------~--------------------------~~~--- 72 (245)
T d1yuba_ 29 ETDTVYEIGTGKGHLTTKLAKISKQVTSIELDSHLFNLSS-------E--------------------------KLK--- 72 (245)
T ss_dssp SSEEEEECSCCCSSCSHHHHHHSSEEEESSSSCSSSSSSS-------C--------------------------TTT---
T ss_pred CCCeEEEECCCccHHHHHHHhhcCceeEeeecccchhhhh-------h--------------------------hhh---
Confidence 5679999999999999999999999999999998852111 0 010
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEEEe--eccCCh
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTC--FFIDTA 310 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~--FFIDta 310 (397)
...++.++.||+.++-. ....++.||.+ |.|.|.
T Consensus 73 -----~~~n~~ii~~D~l~~~~---~~~~~~~vv~NLPY~Ist~ 108 (245)
T d1yuba_ 73 -----LNTRVTLIHQDILQFQF---PNKQRYKIVGNIPYHLSTQ 108 (245)
T ss_dssp -----TCSEEEECCSCCTTTTC---CCSSEEEEEEECCSSSCHH
T ss_pred -----hccchhhhhhhhhcccc---ccceeeeEeeeeehhhhHH
Confidence 11358899999988632 23566777766 567764
|
| >d1uwva2 c.66.1.40 (A:75-432) rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: (Uracil-5-)-methyltransferase domain: rRNA (Uracil-5-)-methyltransferase RumA, catalytic domain species: Escherichia coli [TaxId: 562]
Probab=97.53 E-value=0.00094 Score=62.72 Aligned_cols=149 Identities=13% Similarity=0.141 Sum_probs=88.7
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCC
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNS 252 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~ 252 (397)
.+++.+.+.... .++.+|||+-||+|.++.-||+++-.|.|+|.+..++..|+.-.. .+.
T Consensus 199 ~l~~~v~~~~~~---~~~~~vlDLycG~G~fsl~La~~~~~V~gvE~~~~ai~~A~~na~----~n~------------- 258 (358)
T d1uwva2 199 KMVARALEWLDV---QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNAR----LNG------------- 258 (358)
T ss_dssp HHHHHHHHHHTC---CTTCEEEEESCTTTTTHHHHHTTSSEEEEEESCHHHHHHHHHHHH----HTT-------------
T ss_pred HHHHHHHHhhcc---CCCceEEEecccccccchhccccccEEEeccCcHHHHHHHHHhHH----hcc-------------
Confidence 344444444332 256799999999999999999999999999999999988773211 010
Q ss_pred CCcccCccccccCCCCCCCCCCCCcceeEecccccccC-CCCCCCCccEEEEeeccCChhh-HHHHHHHHHHhccCC-cE
Q 015966 253 LSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYS-DPSQVGAWDAVVTCFFIDTAHN-IVEYIEIISRILKDG-GV 329 (397)
Q Consensus 253 ~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~-~~~~~~~fD~VvT~FFIDta~N-i~~yi~~I~~~LKPG-G~ 329 (397)
-.+..++++|..+... .......+|+|| +|.... +.+.++.|.+. +|. =+
T Consensus 259 ----------------------i~n~~~~~~~~~~~~~~~~~~~~~~d~vi----lDPPR~G~~~~~~~l~~~-~~~~iv 311 (358)
T d1uwva2 259 ----------------------LQNVTFYHENLEEDVTKQPWAKNGFDKVL----LDPARAGAAGVMQQIIKL-EPIRIV 311 (358)
T ss_dssp ----------------------CCSEEEEECCTTSCCSSSGGGTTCCSEEE----ECCCTTCCHHHHHHHHHH-CCSEEE
T ss_pred ----------------------cccceeeecchhhhhhhhhhhhccCceEE----eCCCCccHHHHHHHHHHc-CCCEEE
Confidence 1236677777655322 112346789885 575432 33456666553 332 22
Q ss_pred EEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeec-CCCCCCCccc
Q 015966 330 WINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTI-ETTYTTNPRS 386 (397)
Q Consensus 330 wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i-~~~Y~~d~~s 386 (397)
.|...|-. | .-|++.++ +.||++.+-..+ -=++|..-++
T Consensus 312 YVSCnp~T----------------l-aRDl~~l~-~~gy~l~~i~~~D~FP~T~HvE~ 351 (358)
T d1uwva2 312 YVSCNPAT----------------L-ARDSEALL-KAGYTIARLAMLDMFPHTGHLES 351 (358)
T ss_dssp EEESCHHH----------------H-HHHHHHHH-HTTCEEEEEEEECCSTTSSCCEE
T ss_pred EEeCCHHH----------------H-HHHHHHHH-HCCCeEeEEEEEecCCCCccEEE
Confidence 23333321 1 23555544 569999986633 3444444443
|
| >d1wg8a2 c.66.1.23 (A:5-108,A:207-284) TM0872, methyltransferase domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: MraW-like putative methyltransferases domain: TM0872, methyltransferase domain species: Thermus thermophilus [TaxId: 274]
Probab=97.44 E-value=0.00017 Score=63.41 Aligned_cols=129 Identities=18% Similarity=0.220 Sum_probs=89.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
++..++|..+|.|..+.+|.+++-.|.|+|..+.|+..++.+.
T Consensus 18 ~g~~~vD~T~G~GGhs~~iL~~~~~viaiD~D~~ai~~a~~~~------------------------------------- 60 (182)
T d1wg8a2 18 PGGVYVDATLGGAGHARGILERGGRVIGLDQDPEAVARAKGLH------------------------------------- 60 (182)
T ss_dssp TTCEEEETTCTTSHHHHHHHHTTCEEEEEESCHHHHHHHHHTC-------------------------------------
T ss_pred CCCEEEEeCCCCcHHHHHHhcccCcEEEEhhhhhHHHHHhhcc-------------------------------------
Confidence 6789999999999999999999889999999999987665221
Q ss_pred CCCCCCCCcceeEecccccccCC--CCCCCCccEEEEe-----eccCChhh----HHHHHHHHHHhccCCcEEEEecCCc
Q 015966 269 PASAGITEGFSMCGGDFVEVYSD--PSQVGAWDAVVTC-----FFIDTAHN----IVEYIEIISRILKDGGVWINLGPLL 337 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~--~~~~~~fD~VvT~-----FFIDta~N----i~~yi~~I~~~LKPGG~wIN~GPLl 337 (397)
.+++.++.++|.++... ....+.+|.|+-- +=||.+.. +...|+...++|||||..+- +.
T Consensus 61 ------~~~~~~~~~~f~~~~~~l~~~~~~~vdgIl~DLGvSs~qld~~~re~~~~~~~L~~~~~~lk~gg~~~i---i~ 131 (182)
T d1wg8a2 61 ------LPGLTVVQGNFRHLKRHLAALGVERVDGILADLGVSSFHLDDPSDELNALKEFLEQAAEVLAPGGRLVV---IA 131 (182)
T ss_dssp ------CTTEEEEESCGGGHHHHHHHTTCSCEEEEEEECSCCHHHHHCGGTHHHHHHHHHHHHHHHEEEEEEEEE---EE
T ss_pred ------ccceeEeehHHHHHHHHHHHcCCCccCEEEEEccCCHHHhhcchHHHHHHHHHHHHHHhhhCCCCeEEE---Ee
Confidence 01256677777664211 0123568888743 22444332 34578888999999999985 33
Q ss_pred chhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEeec
Q 015966 338 YHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEKTI 376 (397)
Q Consensus 338 Yh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i 376 (397)
||... ...++..+++.+|+++..+.+
T Consensus 132 fhs~E-------------d~ivk~~~~e~~~k~i~kK~i 157 (182)
T d1wg8a2 132 FHSLE-------------DRVVKRFLRESGLKVLTKKPL 157 (182)
T ss_dssp CSHHH-------------HHHHHHHHHHHCSEESCSSCB
T ss_pred cccch-------------hHHHHHHHhhccceeccCCCc
Confidence 44221 245788888888888765433
|
| >d1zq9a1 c.66.1.24 (A:36-313) Probable dimethyladenosine transferase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Probable dimethyladenosine transferase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.28 E-value=0.00051 Score=64.13 Aligned_cols=52 Identities=12% Similarity=0.101 Sum_probs=41.7
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (397)
|++.+.+.... .++..||++|+|+|.|+..|+++|..|+++|+...|+...+
T Consensus 9 i~~kIv~~~~~---~~~d~VlEIGPG~G~LT~~Ll~~~~~v~aiE~D~~l~~~L~ 60 (278)
T d1zq9a1 9 IINSIIDKAAL---RPTDVVLEVGPGTGNMTVKLLEKAKKVVACELDPRLVAELH 60 (278)
T ss_dssp HHHHHHHHTCC---CTTCEEEEECCTTSTTHHHHHHHSSEEEEEESCHHHHHHHH
T ss_pred HHHHHHHHhCC---CCCCEEEEECCCchHHHHHHHhcCCcEEEEEEccchhHHHH
Confidence 55555554432 25679999999999999999999999999999999976443
|
| >d2ar0a1 c.66.1.45 (A:6-529) M.EcoKI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: N-6 DNA Methylase-like domain: M.EcoKI species: Escherichia coli [TaxId: 562]
Probab=97.17 E-value=0.00064 Score=68.01 Aligned_cols=54 Identities=15% Similarity=0.143 Sum_probs=38.6
Q ss_pred HHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc----C----------------CeEEEEeCCHHHHHHHH
Q 015966 172 KPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL----G----------------FISQGNEFSYYMMICSS 228 (397)
Q Consensus 172 ~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~----G----------------f~V~GnD~S~~ML~~s~ 228 (397)
..|++.+.+.+.. ..+.+|+||+||+|.+.....+. + ....|.|+...+...|.
T Consensus 150 ~~Iv~~mv~ll~~---~~~~~i~DPacGsG~fL~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~G~E~~~~~~~la~ 223 (524)
T d2ar0a1 150 RPLIKTIIHLLKP---QPREVVQDPAAGTAGFLIEADRYVKSQTNDLDDLDGDTQDFQIHRAFIGLELVPGTRRLAL 223 (524)
T ss_dssp HHHHHHHHHHHCC---CTTCCEEETTCTTTHHHHHHHHHHHTTTTTTTTSCHHHHHHHHHTSEEEEESCHHHHHHHH
T ss_pred cchhHhhhhcccC---ccchhhcchhhhcchhhHHHHHHHHHhcCcccccchhHHHHHHHhhhhhhccCHHHHHHHH
Confidence 3466666665532 25679999999999997765542 1 24789999999887765
|
| >d1xdza_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Bacillus subtilis [TaxId: 1423]
Probab=97.05 E-value=0.0028 Score=57.81 Aligned_cols=143 Identities=16% Similarity=0.144 Sum_probs=92.7
Q ss_pred CCCeEEEecCCCChhHHHHHHc--CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCC
Q 015966 189 SPPACLVPGAGLGRLALEISHL--GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPD 266 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~--Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPD 266 (397)
...+|||+|+|.|-.+.-||-. ..+++-+|-+.--..+-+.+.... .+
T Consensus 70 ~~~~ilDiGSGaGfPGi~laI~~p~~~v~Lves~~KK~~FL~~v~~~L----------------------------~L-- 119 (239)
T d1xdza_ 70 QVNTICDVGAGAGFPSLPIKICFPHLHVTIVDSLNKRITFLEKLSEAL----------------------------QL-- 119 (239)
T ss_dssp GCCEEEEECSSSCTTHHHHHHHCTTCEEEEEESCHHHHHHHHHHHHHH----------------------------TC--
T ss_pred CCCeEEeecCCCchHHHHHHHhCCCccceeecchHHHHHHHHHHHHHh----------------------------CC--
Confidence 4568999999999999998864 678999999987765433332110 10
Q ss_pred CCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEe-cCCcchhhhccC
Q 015966 267 IHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINL-GPLLYHFADLYG 345 (397)
Q Consensus 267 v~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~-GPLlYh~~d~~g 345 (397)
.++..+.+...++-......+.||+|++--|-. +...++-..+.||+||.||-+ |+
T Consensus 120 ---------~n~~i~~~R~E~~~~~~~~~~~~D~v~sRAva~----l~~ll~~~~~~l~~~g~~i~~KG~---------- 176 (239)
T d1xdza_ 120 ---------ENTTFCHDRAETFGQRKDVRESYDIVTARAVAR----LSVLSELCLPLVKKNGLFVALKAA---------- 176 (239)
T ss_dssp ---------SSEEEEESCHHHHTTCTTTTTCEEEEEEECCSC----HHHHHHHHGGGEEEEEEEEEEECC----------
T ss_pred ---------CCcEEEeehhhhccccccccccceEEEEhhhhC----HHHHHHHHhhhcccCCEEEEECCC----------
Confidence 124455555444321112246899998865533 457788899999999999952 32
Q ss_pred CCCCccccCCHHHHHHHHHhCCCEEEEEeecCCCCCCCcccccc
Q 015966 346 QEDEMSIELSLEDVKRVALHYGFEFEKEKTIETTYTTNPRSMMQ 389 (397)
Q Consensus 346 ~~~~~~ieLS~EEl~~ll~~~GFeii~e~~i~~~Y~~d~~sm~~ 389 (397)
.++=-.++.+..+...|+++........+.....+.++.
T Consensus 177 -----~~~~El~~a~~~~~~~~~~~~~v~~~~lp~~~~~r~lv~ 215 (239)
T d1xdza_ 177 -----SAEEELNAGKKAITTLGGELENIHSFKLPIEESDRNIMV 215 (239)
T ss_dssp ------CHHHHHHHHHHHHHTTEEEEEEEEEECTTTCCEEEEEE
T ss_pred -----ChHHHHHHHHHHHHHcCCEEEEEEEEeCCCCCCCEEEEE
Confidence 112224555667888999998765555555555555543
|
| >d1qyra_ c.66.1.24 (A:) High level kasugamycin resistance protein KsgA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: High level kasugamycin resistance protein KsgA species: Escherichia coli [TaxId: 562]
Probab=97.00 E-value=0.00074 Score=62.03 Aligned_cols=38 Identities=16% Similarity=-0.005 Sum_probs=35.1
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMIC 226 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~ 226 (397)
++..||++|||+|.|+..|+++|..|+++|+...|+..
T Consensus 21 ~~d~vlEIGpG~G~LT~~Ll~~~~~v~aiEiD~~l~~~ 58 (252)
T d1qyra_ 21 KGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAAR 58 (252)
T ss_dssp TTCCEEEECCTTTTTHHHHHTTCSCEEEECCCHHHHHH
T ss_pred CCCEEEEECCCchHHHHHHHccCCceEEEEeccchhHH
Confidence 56789999999999999999999999999999998753
|
| >d2oyra1 c.66.1.55 (A:1-250) Hypothetical protein YhiQ {Shigella flexneri [TaxId: 623]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: YhiQ-like domain: Hypothetical protein YhiQ species: Shigella flexneri [TaxId: 623]
Probab=96.95 E-value=0.00057 Score=63.04 Aligned_cols=82 Identities=16% Similarity=0.042 Sum_probs=56.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIH 268 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~ 268 (397)
...+|||.=||+|+.++.||.+|+.|+++|-|+.+....+--++......+. ..
T Consensus 88 ~~~~VlD~TaGlG~Da~vlA~~G~~V~~iEr~p~l~~ll~d~l~r~~~~~~~------------------~~-------- 141 (250)
T d2oyra1 88 YLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEI------------------GG-------- 141 (250)
T ss_dssp BCCCEEETTCTTCHHHHHHHHHTCCEEEEECCHHHHHHHHHHHHHHHHCTTT------------------HH--------
T ss_pred CCCEEEECCCcccHHHHHHHhCCCEEEEEccCHHHHHHHHHHHHHHHhCchh------------------HH--------
Confidence 4458999999999999999999999999999998765444333322110000 00
Q ss_pred CCCCCCCCcceeEecccccccCCCCCCCCccEEE
Q 015966 269 PASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVV 302 (397)
Q Consensus 269 p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~Vv 302 (397)
....++.++.||..++.. .....||+|+
T Consensus 142 ----~~~~ri~li~~Ds~~~L~--~~~~~~DvIY 169 (250)
T d2oyra1 142 ----WLQERLQLIHASSLTALT--DITPRPQVVY 169 (250)
T ss_dssp ----HHHHHEEEEESCHHHHST--TCSSCCSEEE
T ss_pred ----HHhhhheeecCcHHHHHh--ccCCCCCEEE
Confidence 011358899999888654 2356799996
|
| >d1jsxa_ c.66.1.20 (A:) Glucose-inhibited division protein B (GidB) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Glucose-inhibited division protein B (GidB) domain: Glucose-inhibited division protein B (GidB) species: Escherichia coli [TaxId: 562]
Probab=96.81 E-value=0.0019 Score=57.57 Aligned_cols=138 Identities=12% Similarity=0.126 Sum_probs=84.8
Q ss_pred chhhHHHHHHHHHHhccccc----Chh-HHhhchHHHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcC--CeEE
Q 015966 143 ADVDKVRCIIRNIVRDWAAE----GKT-ERDQCYKPILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLG--FISQ 215 (397)
Q Consensus 143 ~d~dkv~stL~q~~RDWS~e----G~~-ER~~~y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~G--f~V~ 215 (397)
.+++++. ...++..+|... +.. ..+.--.-|++-|.- ++.. ++.+|||+|+|.|-.+.-||-.. .+++
T Consensus 19 ~q~~~L~-~y~~ll~~~N~~~NLts~~~~~~~~~rHi~DSl~~-~~~~---~~~~ilDiGsGaG~PGi~laI~~p~~~~~ 93 (207)
T d1jsxa_ 19 HQKNQLI-AYVNMLHKWNKAYNLTSVRDPNEMLVRHILDSIVV-APYL---QGERFIDVGTGPGLPGIPLSIVRPEAHFT 93 (207)
T ss_dssp HHHHHHH-HHHHHHHHHC------------CHHHHHHHHHHHH-GGGC---CSSEEEEETCTTTTTHHHHHHHCTTSEEE
T ss_pred HHHHHHH-HHHHHHHHhCCceeeEECCCHHHHHHHHhcchHhh-hhhh---cCCceeeeeccCCceeeehhhhcccceEE
Confidence 4555555 555667788642 111 111112235555542 1211 34689999999999999999764 5799
Q ss_pred EEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCCCCCC
Q 015966 216 GNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSDPSQV 295 (397)
Q Consensus 216 GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~~~~~ 295 (397)
.+|-+.-=..+.+.+.... .+ .++....+...++.. .
T Consensus 94 Lves~~KK~~FL~~~~~~L----------------------------~L-----------~nv~v~~~R~E~~~~----~ 130 (207)
T d1jsxa_ 94 LLDSLGKRVRFLRQVQHEL----------------------------KL-----------ENIEPVQSRVEEFPS----E 130 (207)
T ss_dssp EEESCHHHHHHHHHHHHHT----------------------------TC-----------SSEEEEECCTTTSCC----C
T ss_pred EEecchHHHHHHHHHHHHc----------------------------CC-----------cceeeeccchhhhcc----c
Confidence 9999987765444322110 00 235667777665432 4
Q ss_pred CCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEE
Q 015966 296 GAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWIN 332 (397)
Q Consensus 296 ~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN 332 (397)
.+||+|++--|-. +...++-..+.||+||.++-
T Consensus 131 ~~fD~V~sRA~~~----~~~ll~~~~~~l~~~g~~~~ 163 (207)
T d1jsxa_ 131 PPFDGVISRAFAS----LNDMVSWCHHLPGEQGRFYA 163 (207)
T ss_dssp SCEEEEECSCSSS----HHHHHHHHTTSEEEEEEEEE
T ss_pred cccceehhhhhcC----HHHHHHHHHHhcCCCcEEEE
Confidence 6899997755532 45678888999999999995
|
| >d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.70 E-value=0.00098 Score=56.42 Aligned_cols=99 Identities=18% Similarity=0.146 Sum_probs=63.4
Q ss_pred CCCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCcccccc
Q 015966 188 ESPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (397)
Q Consensus 188 ~~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~i 264 (397)
+++.+||+.|+ |.|.++..+|+. |++|.+.+-|..-+..++.+ .+ . ..
T Consensus 27 ~~g~~VlV~Ga~G~vG~~aiq~a~~~G~~vi~~~~~~~~~~~~~~~--Ga---~-~v----------------------- 77 (174)
T d1yb5a2 27 KAGESVLVHGASGGVGLAACQIARAYGLKILGTAGTEEGQKIVLQN--GA---H-EV----------------------- 77 (174)
T ss_dssp CTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHT--TC---S-EE-----------------------
T ss_pred CCCCEEEEEeccccccccccccccccCccccccccccccccccccc--Cc---c-cc-----------------------
Confidence 47889999997 789999999886 99999999898766544311 00 0 00
Q ss_pred CCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecC
Q 015966 265 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGP 335 (397)
Q Consensus 265 PDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GP 335 (397)
+.....||.+-.......+.+|+|+.+ .-+ .+++...++|+|||.+|.+|.
T Consensus 78 -------------i~~~~~~~~~~i~~~t~~~g~d~v~d~-----~g~--~~~~~~~~~l~~~G~iv~~G~ 128 (174)
T d1yb5a2 78 -------------FNHREVNYIDKIKKYVGEKGIDIIIEM-----LAN--VNLSKDLSLLSHGGRVIVVGS 128 (174)
T ss_dssp -------------EETTSTTHHHHHHHHHCTTCEEEEEES-----CHH--HHHHHHHHHEEEEEEEEECCC
T ss_pred -------------cccccccHHHHhhhhhccCCceEEeec-----ccH--HHHHHHHhccCCCCEEEEEec
Confidence 000112332210000013569999654 332 578889999999999998764
|
| >d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Cinnamyl alcohol dehydrogenase, ADH6 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.57 E-value=0.00064 Score=57.49 Aligned_cols=41 Identities=17% Similarity=0.014 Sum_probs=35.3
Q ss_pred CCCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGCG-lGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.|+| +|.++..+|+. |.+|.++|.|...+..++
T Consensus 26 ~~g~~vlI~GaG~vG~~a~q~ak~~G~~vi~~~~~~~k~~~a~ 68 (168)
T d1piwa2 26 GPGKKVGIVGLGGIGSMGTLISKAMGAETYVISRSSRKREDAM 68 (168)
T ss_dssp STTCEEEEECCSHHHHHHHHHHHHHTCEEEEEESSSTTHHHHH
T ss_pred CCCCEEEEECCCCcchhHHHHhhhccccccccccchhHHHHhh
Confidence 478899999999 88889998855 999999999998887655
|
| >d1ej0a_ c.66.1.2 (A:) RNA methyltransferase FtsJ {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: RNA methyltransferase FtsJ domain: RNA methyltransferase FtsJ species: Escherichia coli [TaxId: 562]
Probab=96.30 E-value=0.004 Score=54.01 Aligned_cols=131 Identities=15% Similarity=0.133 Sum_probs=77.6
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCcccccccccccc
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNC 250 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~S 250 (397)
+++ |.+.|.-. +++.+|||+||+-|.-...++++ .-.|.|+|+-. |
T Consensus 10 L~E-I~~k~~l~--k~~~~vlDLg~aPGgw~q~~~~~~~~~~~v~~vDl~~-~--------------------------- 58 (180)
T d1ej0a_ 10 LDE-IQQSDKLF--KPGMTVVDLGAAPGGWSQYVVTQIGGKGRIIACDLLP-M--------------------------- 58 (180)
T ss_dssp HHH-HHHHHCCC--CTTCEEEEESCTTCHHHHHHHHHHCTTCEEEEEESSC-C---------------------------
T ss_pred HHH-HHHHhCcc--CCCCeEEEEeccCCcceEEEEeeccccceEEEeeccc-c---------------------------
Confidence 444 44444432 36789999999999998877764 23567777543 1
Q ss_pred CCCCcccCccccccCCCCCCCCCCCCcceeEecccccccCC-----CCCCCCccEEEEeec--------cCChhh---HH
Q 015966 251 NSLSDSDQLRPVSIPDIHPASAGITEGFSMCGGDFVEVYSD-----PSQVGAWDAVVTCFF--------IDTAHN---IV 314 (397)
Q Consensus 251 n~~s~~~qlr~v~iPDv~p~~~~~~~~ls~~~GDF~ely~~-----~~~~~~fD~VvT~FF--------IDta~N---i~ 314 (397)
.| ..+..++.||+.+.... ....+.+|+|++=-- .|.... +.
T Consensus 59 -----------------~~-----i~~~~~~~~d~~~~~~~~~~~~~~~~~~~DlVlSD~ap~~sg~~~~d~~~~~~L~~ 116 (180)
T d1ej0a_ 59 -----------------DP-----IVGVDFLQGDFRDELVMKALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVE 116 (180)
T ss_dssp -----------------CC-----CTTEEEEESCTTSHHHHHHHHHHHTTCCEEEEEECCCCCCCSCHHHHHHHHHHHHH
T ss_pred -----------------cc-----cCCceEeecccccchhhhhhhhhccCcceeEEEecccchhcccchhHHHHHHHHHH
Confidence 00 12356777887642110 012467999987422 222211 12
Q ss_pred HHHHHHHHhccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEEe
Q 015966 315 EYIEIISRILKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKEK 374 (397)
Q Consensus 315 ~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e~ 374 (397)
.-+....++||+||.||- .. |.. -..+++...++.. |+-++--
T Consensus 117 ~~l~~a~~~Lk~gG~fV~----K~-F~g-----------~~~~~l~~~l~~~-F~~V~~~ 159 (180)
T d1ej0a_ 117 LALEMCRDVLAPGGSFVV----KV-FQG-----------EGFDEYLREIRSL-FTKVKVR 159 (180)
T ss_dssp HHHHHHHHHEEEEEEEEE----EE-ESS-----------TTHHHHHHHHHHH-EEEEEEE
T ss_pred HHHHhhhhccCCCCcEEE----EE-ecC-----------ccHHHHHHHHHhh-cCEEEEE
Confidence 356677799999999995 11 221 2356788888775 8766643
|
| >d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]
Probab=96.02 E-value=0.015 Score=48.29 Aligned_cols=41 Identities=20% Similarity=0.188 Sum_probs=34.4
Q ss_pred CCCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGCG-lGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.||| .|.++..+|+. |.+|.++|.+..-+..++
T Consensus 25 ~~g~~vlV~G~G~vG~~~~~~ak~~Ga~vi~v~~~~~r~~~a~ 67 (170)
T d1e3ja2 25 QLGTTVLVIGAGPIGLVSVLAAKAYGAFVVCTARSPRRLEVAK 67 (170)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEEcccccchhhHhhHhhhcccccccchHHHHHHHHH
Confidence 367899999998 78888877765 999999999998886655
|
| >d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein TM0436 species: Thermotoga maritima [TaxId: 2336]
Probab=95.85 E-value=0.011 Score=50.00 Aligned_cols=41 Identities=20% Similarity=0.117 Sum_probs=34.4
Q ss_pred CCCCeEEEecCC-CChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGAG-LGRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGCG-lGRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.||| .|.++..+|+. |+ .|.++|.+..-+..++
T Consensus 27 ~~G~~VlV~GaG~iG~~~~~~ak~~Ga~~Vi~~~~~~~~~~~a~ 70 (182)
T d1vj0a2 27 FAGKTVVIQGAGPLGLFGVVIARSLGAENVIVIAGSPNRLKLAE 70 (182)
T ss_dssp CBTCEEEEECCSHHHHHHHHHHHHTTBSEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEECCCccchhheecccccccccccccccccccccccc
Confidence 367899999998 48888888876 87 7999999999887655
|
| >d2bm8a1 c.66.1.50 (A:2-233) Cephalosporin hydroxylase CmcI {Streptomyces clavuligerus [TaxId: 1901]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: CmcI-like domain: Cephalosporin hydroxylase CmcI species: Streptomyces clavuligerus [TaxId: 1901]
Probab=95.71 E-value=0.011 Score=53.27 Aligned_cols=33 Identities=15% Similarity=0.092 Sum_probs=24.9
Q ss_pred CCCeEEEecCCCChhHHHHHH----cC--CeEEEEeCCH
Q 015966 189 SPPACLVPGAGLGRLALEISH----LG--FISQGNEFSY 221 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~----~G--f~V~GnD~S~ 221 (397)
++.+||++|++.|.-+..+|. .| -.+.|+|+..
T Consensus 80 KPk~ILEIGv~~GgS~~~~a~~l~~~~~~~kI~giDId~ 118 (232)
T d2bm8a1 80 RPRTIVELGVYNGGSLAWFRDLTKIMGIDCQVIGIDRDL 118 (232)
T ss_dssp CCSEEEEECCTTSHHHHHHHHHHHHTTCCCEEEEEESCC
T ss_pred CCCEEEEECCCCchHHHHHHHHHHhcCCCceEEecCcCh
Confidence 456899999999987766653 23 4788999865
|
| >d2p41a1 c.66.1.25 (A:8-264) An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 {Dengue virus 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: mRNA cap methylase domain: An RNA cap (nucleoside-2'-O-)-methyltransferase domain of RNA polymerase NS5 species: Dengue virus 2 [TaxId: 11060]
Probab=95.25 E-value=0.071 Score=48.89 Aligned_cols=32 Identities=16% Similarity=0.058 Sum_probs=25.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCC
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFS 220 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S 220 (397)
+..+|+|+|||.|.-++.+|.+. -.|.|.++-
T Consensus 66 ~~~~vvDlG~~pGgws~~~a~~~~v~~V~g~~iG 99 (257)
T d2p41a1 66 PEGKVVDLGCGRGGWSYYCGGLKNVREVKGLTKG 99 (257)
T ss_dssp CCEEEEEETCTTSHHHHHHHTSTTEEEEEEECCC
T ss_pred CCCeEEEecCCCChHHHHHHhhcCCCceeEEEec
Confidence 67799999999999999999774 356666653
|
| >d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative enoyl reductase domain of polyketide synthase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=95.21 E-value=0.014 Score=48.81 Aligned_cols=100 Identities=22% Similarity=0.184 Sum_probs=60.5
Q ss_pred CCCCeEEEec--CCCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCcccccc
Q 015966 188 ESPPACLVPG--AGLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (397)
Q Consensus 188 ~~~~rVLvPG--CGlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~i 264 (397)
.++.+||+.| .|+|.++..||+. |..|.+..-+..=+..++ ... + ... ..+ +-
T Consensus 24 ~~g~~VlI~ga~g~vG~~~iqla~~~g~~vi~~~~~~~~~~~l~---~~G--a-~~v-i~~-----------------~~ 79 (183)
T d1pqwa_ 24 SPGERVLIHSATGGVGMAAVSIAKMIGARIYTTAGSDAKREMLS---RLG--V-EYV-GDS-----------------RS 79 (183)
T ss_dssp CTTCEEEETTTTSHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH---TTC--C-SEE-EET-----------------TC
T ss_pred CCCCEEEEECCCCCcccccchhhccccccceeeecccccccccc---ccc--c-ccc-ccC-----------------Cc
Confidence 3678999987 4788999999887 999998887765443222 110 0 000 000 00
Q ss_pred CCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCC
Q 015966 265 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL 336 (397)
Q Consensus 265 PDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPL 336 (397)
+| +...+.+... ...+|+|+.+-. + +.++...++|||+|++|.+|..
T Consensus 80 ~~--------------~~~~v~~~t~----~~g~d~v~d~~g-----~--~~~~~~~~~l~~~G~~v~~G~~ 126 (183)
T d1pqwa_ 80 VD--------------FADEILELTD----GYGVDVVLNSLA-----G--EAIQRGVQILAPGGRFIELGKK 126 (183)
T ss_dssp ST--------------HHHHHHHHTT----TCCEEEEEECCC-----T--HHHHHHHHTEEEEEEEEECSCG
T ss_pred cC--------------HHHHHHHHhC----CCCEEEEEeccc-----c--hHHHHHHHHhcCCCEEEEEccC
Confidence 00 0011222222 356999975443 2 4677888999999999998754
|
| >d2dula1 c.66.1.58 (A:3-377) N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: TRM1-like domain: N(2),N(2)-dimethylguanosine tRNA methyltransferase Trm1 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.19 E-value=0.014 Score=56.05 Aligned_cols=111 Identities=12% Similarity=0.037 Sum_probs=71.1
Q ss_pred CCCeEEEecCCCChhHHHHHH-cCC-eEEEEeCCHHHHHHHHhhh--hcccccCccccccccccccCCCCcccCcccccc
Q 015966 189 SPPACLVPGAGLGRLALEISH-LGF-ISQGNEFSYYMMICSSFIL--NHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSI 264 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~-~Gf-~V~GnD~S~~ML~~s~fiL--n~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~i 264 (397)
++.+|||+.||+|-.+...|+ .|. .|++||+|...+..++.-+ |.... . .........
T Consensus 45 ~~~~vLD~~sasG~rsiRya~E~~~~~V~~nDis~~A~~~i~~N~~lN~~~~---~--------------~~~~~~~~~- 106 (375)
T d2dula1 45 NPKIVLDALSATGIRGIRFALETPAEEVWLNDISEDAYELMKRNVMLNFDGE---L--------------RESKGRAIL- 106 (375)
T ss_dssp CCSEEEESSCTTSHHHHHHHHHSSCSEEEEEESCHHHHHHHHHHHHHHCCSC---C--------------EECSSEEEE-
T ss_pred CCCEEEEcCCCccHHHHHHHHhCCCCEEEEecCCHHHHHHHHHHHHhcCccc---c--------------ccccccccc-
Confidence 356899999999999997776 454 7999999999988765322 21100 0 000000000
Q ss_pred CCCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEE
Q 015966 265 PDIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWI 331 (397)
Q Consensus 265 PDv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wI 331 (397)
.....+.+...|...+.. .....||+|. ||.---...||+...+.+|.||++.
T Consensus 107 --------~~~~~~~~~~~Da~~~~~--~~~~~fDvID----iDPfGs~~pfldsAi~a~~~~Gll~ 159 (375)
T d2dula1 107 --------KGEKTIVINHDDANRLMA--ERHRYFHFID----LDPFGSPMEFLDTALRSAKRRGILG 159 (375)
T ss_dssp --------ESSSEEEEEESCHHHHHH--HSTTCEEEEE----ECCSSCCHHHHHHHHHHEEEEEEEE
T ss_pred --------cccceeEeehhhhhhhhH--hhcCcCCccc----CCCCCCcHHHHHHHHHHhccCCEEE
Confidence 011235667777665432 2356799884 4543334579999999999999998
|
| >d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Bacterial secondary alcohol dehydrogenase species: Clostridium beijerinckii [TaxId: 1520]
Probab=95.02 E-value=0.0061 Score=51.96 Aligned_cols=41 Identities=20% Similarity=0.183 Sum_probs=34.6
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGCGl-GRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.|||. |.++..+|+. |. .|.++|.+..-+..++
T Consensus 26 ~~g~~VlI~GaG~vGl~~~q~ak~~Ga~~Vi~~d~~~~r~~~a~ 69 (174)
T d1jqba2 26 EMGSSVVVIGIGAVGLMGIAGAKLRGAGRIIGVGSRPICVEAAK 69 (174)
T ss_dssp CTTCCEEEECCSHHHHHHHHHHHTTTCSCEEEECCCHHHHHHHH
T ss_pred CCCCEEEEEcCCcchhhhhhhhhcccccccccccchhhhHHHHH
Confidence 4778999999996 8888888887 76 6999999998877665
|
| >d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: L-aminoacid oxidase species: Malayan pit viper (Calloselasma rhodostoma) [TaxId: 8717]
Probab=94.46 E-value=0.021 Score=49.32 Aligned_cols=49 Identities=24% Similarity=0.282 Sum_probs=38.2
Q ss_pred hHHHHHHHHhhCCCCCCCCCCeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015966 171 YKPILEELDALFPNRSKESPPACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (397)
Q Consensus 171 y~pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (397)
|+-.+.....-++.. .++.+|+++|+|.+.| |++|+++|++|+-+|-+.
T Consensus 13 ~~~~~~~~~~~~~~~--~~pkkV~IIGaG~aGLsaA~~L~~~G~~V~vlE~~~ 63 (370)
T d2iida1 13 YEEFLEIARNGLKAT--SNPKHVVIVGAGMAGLSAAYVLAGAGHQVTVLEASE 63 (370)
T ss_dssp HHHHHHHHHHCSCCC--SSCCEEEEECCBHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred HHHHHHHHhcCCCCC--CCCCeEEEECCCHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 555666666555433 3567999999999999 788999999999999654
|
| >d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Escherichia coli [TaxId: 562]
Probab=94.41 E-value=0.019 Score=47.86 Aligned_cols=41 Identities=15% Similarity=0.059 Sum_probs=33.5
Q ss_pred CCCCeEEEecCC--CChhHHHHHHc-CCeEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGAG--LGRLALEISHL-GFISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGCG--lGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.|+| .|.++..||+. |..|.+.+.|..-+..++
T Consensus 27 ~~g~~Vlv~ga~g~vG~~~iqlak~~Ga~Vi~~~~s~~k~~~~~ 70 (179)
T d1qora2 27 KPDEQFLFHAAAGGVGLIACQWAKALGAKLIGTVGTAQKAQSAL 70 (179)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHHTCEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEEccccccchHHHHHHHHhCCeEeecccchHHHHHHH
Confidence 467899998544 89999999887 999999999998765443
|
| >d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.38 E-value=0.012 Score=48.86 Aligned_cols=41 Identities=15% Similarity=0.238 Sum_probs=33.0
Q ss_pred CCCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGCG-lGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.|+| .|.++..+|+. |.+|.++|.+..-+..++
T Consensus 26 ~~g~~VlV~GaG~vG~~~~~~ak~~G~~Vi~~~~~~~~~~~a~ 68 (166)
T d1llua2 26 RPGQWVAISGIGGLGHVAVQYARAMGLHVAAIDIDDAKLELAR 68 (166)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEeeccccHHHHHHHHHHcCCccceecchhhHHHhhh
Confidence 367899999987 46777777765 899999999998876554
|
| >d2dw4a2 c.3.1.2 (A:274-654,A:764-831) Lysine-specific histone demethylase 1, LSD1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Lysine-specific histone demethylase 1, LSD1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.26 E-value=0.015 Score=49.11 Aligned_cols=34 Identities=18% Similarity=0.229 Sum_probs=30.2
Q ss_pred CCCCeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015966 188 ESPPACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (397)
Q Consensus 188 ~~~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (397)
++..||+|+|+|.+.| |++|+++|++|+-+|-+.
T Consensus 3 ~~~~kViVIGaG~aGL~aA~~L~~~G~~V~VlEa~~ 38 (449)
T d2dw4a2 3 KKTGKVIIIGSGVSGLAAARQLQSFGMDVTLLEARD 38 (449)
T ss_dssp SCCCEEEEECCBHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred CCCCcEEEECCCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 3677999999999999 899999999999988654
|
| >d2f1ka2 c.2.1.6 (A:1-165) Prephenate dehydrogenase TyrA {Synechocystis sp. pcc 6803 [TaxId: 1148]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Synechocystis sp. pcc 6803 [TaxId: 1148]
Probab=94.25 E-value=0.14 Score=42.02 Aligned_cols=37 Identities=19% Similarity=0.010 Sum_probs=29.5
Q ss_pred CeEEEecCC--CChhHHHHHHcCCeEEEEeCCHHHHHHH
Q 015966 191 PACLVPGAG--LGRLALEISHLGFISQGNEFSYYMMICS 227 (397)
Q Consensus 191 ~rVLvPGCG--lGRLa~eLA~~Gf~V~GnD~S~~ML~~s 227 (397)
.||.++|+| =+.+|..|++.|++|.|.|.+...+..+
T Consensus 1 MkI~iIG~G~mG~~lA~~l~~~g~~V~~~d~~~~~~~~a 39 (165)
T d2f1ka2 1 MKIGVVGLGLIGASLAGDLRRRGHYLIGVSRQQSTCEKA 39 (165)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHHHH
T ss_pred CEEEEEeecHHHHHHHHHHHHCCCEEEEEECCchHHHHH
Confidence 378999887 3456788889999999999998776543
|
| >d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Quinone oxidoreductase species: Thermus thermophilus [TaxId: 274]
Probab=94.09 E-value=0.011 Score=49.86 Aligned_cols=38 Identities=18% Similarity=0.205 Sum_probs=30.9
Q ss_pred CCCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015966 188 ESPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMI 225 (397)
Q Consensus 188 ~~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (397)
+++.+||+.|+ |.|.++..+|+. |..|.+++-|..=+.
T Consensus 26 ~~g~~VlI~ga~G~vG~~aiqlak~~G~~vi~~~~~~~~~~ 66 (171)
T d1iz0a2 26 RPGEKVLVQAAAGALGTAAVQVARAMGLRVLAAASRPEKLA 66 (171)
T ss_dssp CTTCEEEESSTTBHHHHHHHHHHHHTTCEEEEEESSGGGSH
T ss_pred CCCCEEEEEeccccchhhhhhhhcccccccccccccccccc
Confidence 47889999884 568999999887 999999998875443
|
| >d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: B. subtilis YhfP homologue species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.09 E-value=0.036 Score=47.52 Aligned_cols=97 Identities=18% Similarity=0.140 Sum_probs=60.5
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+||+.|+ |.|..+..||+. |..|.+.--|..-+..++- .. ....|.
T Consensus 31 ~g~~VLI~gaaGGVG~~aiQlak~~Ga~Viat~~s~~k~~~~~~---lG---a~~vi~---------------------- 82 (176)
T d1xa0a2 31 ERGPVLVTGATGGVGSLAVSMLAKRGYTVEASTGKAAEHDYLRV---LG---AKEVLA---------------------- 82 (176)
T ss_dssp GGCCEEESSTTSHHHHHHHHHHHHTTCCEEEEESCTTCHHHHHH---TT---CSEEEE----------------------
T ss_pred CCCEEEEEeccchHHHHHHHHHHHcCCceEEecCchHHHHHHHh---cc---cceeee----------------------
Confidence 5778999984 789999999954 9999998887766554431 11 111110
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCC
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL 336 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPL 336 (397)
...++.+... .-..+.+|+|+.+-. -.++....++|||||.+|.+|+.
T Consensus 83 ---------------~~~~~~~~~~-~~~~~gvD~vid~vg-------g~~~~~~l~~l~~~Griv~~G~~ 130 (176)
T d1xa0a2 83 ---------------REDVMAERIR-PLDKQRWAAAVDPVG-------GRTLATVLSRMRYGGAVAVSGLT 130 (176)
T ss_dssp ---------------CC----------CCSCCEEEEEECST-------TTTHHHHHHTEEEEEEEEECSCC
T ss_pred ---------------cchhHHHHHH-HhhccCcCEEEEcCC-------chhHHHHHHHhCCCceEEEeecc
Confidence 0001111111 012367999965432 14688899999999999988765
|
| >d1ixka_ c.66.1.38 (A:) Hypothetical methyltransferase PH1374 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Hypothetical methyltransferase PH1374 species: Archaeon Pyrococcus horikoshii [TaxId: 53953]
Probab=93.94 E-value=0.16 Score=47.07 Aligned_cols=130 Identities=13% Similarity=0.096 Sum_probs=77.9
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+|||..||-|.=+..||.. .-.++++|.+..-+......+++.. +
T Consensus 116 ~g~~vlD~CAapGgKt~~l~~~~~~~~~i~a~d~~~~r~~~l~~~~~r~~----------------------------~- 166 (313)
T d1ixka_ 116 PGEIVADMAAAPGGKTSYLAQLMRNDGVIYAFDVDENRLRETRLNLSRLG----------------------------V- 166 (313)
T ss_dssp TTCEEEECCSSCSHHHHHHHHHTTTCSEEEEECSCHHHHHHHHHHHHHHT----------------------------C-
T ss_pred ccceeeecccchhhhhHhhhhhcccccceeeeccCHHHHHHHHHHHHHHH----------------------------h-
Confidence 6789999999999988888765 3459999999988764443232210 0
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEE---e------------eccCChhhHHH-------HHHHHHHh
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVT---C------------FFIDTAHNIVE-------YIEIISRI 323 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT---~------------FFIDta~Ni~~-------yi~~I~~~ 323 (397)
.++..+..|.+.+.. ..+.||.|+. | .+-.+..++.+ .+....+.
T Consensus 167 ----------~~i~~~~~d~~~~~~---~~~~fD~ILvDaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~ 233 (313)
T d1ixka_ 167 ----------LNVILFHSSSLHIGE---LNVEFDKILLDAPCTGSGTIHKNPERKWNRTMDDIKFCQGLQMRLLEKGLEV 233 (313)
T ss_dssp ----------CSEEEESSCGGGGGG---GCCCEEEEEEECCTTSTTTCC--------CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ----------hcccccccccccccc---ccccccEEEEccccccCCceeeccchhhhhhhhHHHHHHHHHHHHHHhhhhe
Confidence 013345556554421 2467888873 1 11223334433 46788899
Q ss_pred ccCCcEEEEecCCcchhhhccCCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 324 LKDGGVWINLGPLLYHFADLYGQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 324 LKPGG~wIN~GPLlYh~~d~~g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
|||||++| |.--.. .-+=..+-|..++++.+|+++..
T Consensus 234 lk~gG~lV------YsTCSl-------~~eENE~VV~~~L~~~~~~~~~~ 270 (313)
T d1ixka_ 234 LKPGGILV------YSTCSL-------EPEENEFVIQWALDNFDVELLPL 270 (313)
T ss_dssp EEEEEEEE------EEESCC-------CGGGTHHHHHHHHHHSSEEEECC
T ss_pred eCCCcEEE------EeeccC-------ChHhHHHHHHHHHhcCCCEEeec
Confidence 99999988 210000 00112355677778888888753
|
| >d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase species: Guinea pig (Cavia porcellus) [TaxId: 10141]
Probab=93.84 E-value=0.019 Score=48.50 Aligned_cols=39 Identities=26% Similarity=0.286 Sum_probs=32.5
Q ss_pred CCCCeEEEecC-C-CChhHHHHHHc-CCeEEEEeCCHHHHHH
Q 015966 188 ESPPACLVPGA-G-LGRLALEISHL-GFISQGNEFSYYMMIC 226 (397)
Q Consensus 188 ~~~~rVLvPGC-G-lGRLa~eLA~~-Gf~V~GnD~S~~ML~~ 226 (397)
+++.+||+-|+ | .|..+..||+. |.+|.+..-|.+-+..
T Consensus 28 ~~G~~VlV~ga~ggvG~~aiqlak~~Ga~vi~~~~~~~~~~~ 69 (182)
T d1v3va2 28 KGGETVLVSAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKIAY 69 (182)
T ss_dssp CSSCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESSHHHHHH
T ss_pred CCCCEEEEEeCCCchhHHHHHHHHccCCEEEEeCCCHHHHHH
Confidence 47889999887 3 79999999887 9999999999876543
|
| >d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus haemolyticus [TaxId: 726]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HhaI species: Haemophilus haemolyticus [TaxId: 726]
Probab=93.81 E-value=0.37 Score=43.18 Aligned_cols=40 Identities=23% Similarity=0.215 Sum_probs=34.9
Q ss_pred CCCeEEEecCCCChhHHHHHHcCCeEE-EEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHLGFISQ-GNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf~V~-GnD~S~~ML~~s~ 228 (397)
.+.|||++=||.|.+..-|-+.||+|. ++|+......+.+
T Consensus 10 ~~lrv~~lFsG~Gg~~~gl~~aG~~~v~a~e~d~~a~~~~~ 50 (327)
T d2c7pa1 10 TGLRFIDLFAGLGGFRLALESCGAECVYSNEWDKYAQEVYE 50 (327)
T ss_dssp TTCEEEEETCTTTHHHHHHHHTTCEEEEEECCCHHHHHHHH
T ss_pred CCCeEEEECccccHHHHHHHHCCCeEEEEEeCCHHHHHHHH
Confidence 678999999999999999999999865 7999998877654
|
| >d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Ketose reductase (sorbitol dehydrogenase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.13 E-value=0.15 Score=42.10 Aligned_cols=41 Identities=22% Similarity=0.181 Sum_probs=32.3
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGCGl-GRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.|||. |.++..+|+. |. .|.++|.+..=+..++
T Consensus 25 ~~gd~VlI~G~G~iG~~~~~~a~~~G~~~Vi~~d~~~~rl~~a~ 68 (171)
T d1pl8a2 25 TLGHKVLVCGAGPIGMVTLLVAKAMGAAQVVVTDLSATRLSKAK 68 (171)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEECCCccHHHHHHHHHHcCCceEEeccCCHHHHHHHH
Confidence 3678999999975 5567777665 88 7999999998887665
|
| >d1seza1 c.3.1.2 (A:13-329,A:442-497) Protoporphyrinogen oxidase {Tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=92.72 E-value=0.032 Score=46.72 Aligned_cols=31 Identities=26% Similarity=0.190 Sum_probs=27.9
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015966 191 PACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (397)
Q Consensus 191 ~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (397)
+||+++|+|.+.| |++|+++|++|+-+|-+.
T Consensus 2 KkV~IIGaG~aGL~aA~~La~~G~~V~vlE~~~ 34 (373)
T d1seza1 2 KRVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEG 34 (373)
T ss_dssp CEEEEECCSHHHHHHHHHHHTTSCEEEEECSSS
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeCCC
Confidence 5899999999999 789999999999999653
|
| >d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Formaldehyde dehydrogenase species: Pseudomonas putida [TaxId: 303]
Probab=92.63 E-value=0.081 Score=45.54 Aligned_cols=41 Identities=20% Similarity=0.216 Sum_probs=34.2
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGCGl-GRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.|||. |-++..+|+. |. .|.++|.+..-+..++
T Consensus 24 ~~G~tVlV~GaG~vGl~a~~~ak~~ga~~Vi~~d~~~~rl~~a~ 67 (195)
T d1kola2 24 GPGSTVYVAGAGPVGLAAAASARLLGAAVVIVGDLNPARLAHAK 67 (195)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhhcccceeeecccchhhHhhh
Confidence 4788999999998 6678888864 66 7999999999987766
|
| >d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YahK species: Escherichia coli [TaxId: 562]
Probab=92.43 E-value=0.13 Score=42.45 Aligned_cols=40 Identities=20% Similarity=0.182 Sum_probs=31.9
Q ss_pred CCCCeEEEecCC-CChhHHHHHHc-CCeEEEEeCCHHHHHHH
Q 015966 188 ESPPACLVPGAG-LGRLALEISHL-GFISQGNEFSYYMMICS 227 (397)
Q Consensus 188 ~~~~rVLvPGCG-lGRLa~eLA~~-Gf~V~GnD~S~~ML~~s 227 (397)
+++.+||+.||| .|.++..+|+. |..+.++|-+..=+..+
T Consensus 29 ~~G~~VlI~GaG~vG~~a~qlak~~Ga~~i~~~~~~~~~~~a 70 (168)
T d1uufa2 29 GPGKKVGVVGIGGLGHMGIKLAHAMGAHVVAFTTSEAKREAA 70 (168)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSGGGHHHH
T ss_pred CCCCEEEEeccchHHHHHHHHhhcccccchhhccchhHHHHH
Confidence 378899999997 47788888874 99999999888765433
|
| >d1sqga2 c.66.1.38 (A:145-428) Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: Ribosomal RNA small subunit methyltransferase B, RsmB (Sun, Fmu/Fmv), C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=92.25 E-value=0.19 Score=45.77 Aligned_cols=43 Identities=12% Similarity=-0.130 Sum_probs=35.3
Q ss_pred CCCeEEEecCCCChhHHHHHHcCC--eEEEEeCCHHHHHHHHhhh
Q 015966 189 SPPACLVPGAGLGRLALEISHLGF--ISQGNEFSYYMMICSSFIL 231 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~Gf--~V~GnD~S~~ML~~s~fiL 231 (397)
++.+|||..||-|.=+..||.++. .|+++|.|..-+....-.+
T Consensus 102 ~g~~vLD~CAaPGgKt~~la~l~~~~~i~a~d~~~~R~~~l~~~~ 146 (284)
T d1sqga2 102 NGEHILDLCAAPGGKTTHILEVAPEAQVVAVDIDEQRLSRVYDNL 146 (284)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHCTTCEEEEEESSTTTHHHHHHHH
T ss_pred ccceeEeccCccccchhhhhhhhhhhhhhhhhcchhhhhhHhhhh
Confidence 678999999999999999998865 4899999998876544333
|
| >d2g5ca2 c.2.1.6 (A:30-200) Prephenate dehydrogenase TyrA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Aquifex aeolicus [TaxId: 63363]
Probab=92.22 E-value=0.73 Score=37.39 Aligned_cols=37 Identities=22% Similarity=0.352 Sum_probs=30.2
Q ss_pred eEEEecCCC--ChhHHHHHHcCC--eEEEEeCCHHHHHHHH
Q 015966 192 ACLVPGAGL--GRLALEISHLGF--ISQGNEFSYYMMICSS 228 (397)
Q Consensus 192 rVLvPGCGl--GRLa~eLA~~Gf--~V~GnD~S~~ML~~s~ 228 (397)
+|+.+|||+ |.+|.-|.+.|+ +|+|.|.+..-+..+.
T Consensus 3 ~I~IIG~G~mG~sla~~L~~~g~~~~I~~~D~~~~~~~~a~ 43 (171)
T d2g5ca2 3 NVLIVGVGFMGGSFAKSLRRSGFKGKIYGYDINPESISKAV 43 (171)
T ss_dssp EEEEESCSHHHHHHHHHHHHTTCCSEEEEECSCHHHHHHHH
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCeEEEEEECChHHHHHHH
Confidence 699999987 447888999997 6899999998876443
|
| >d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: GDI-like N domain domain: Guanine nucleotide dissociation inhibitor, GDI species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.89 E-value=0.041 Score=44.61 Aligned_cols=31 Identities=16% Similarity=-0.008 Sum_probs=27.6
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015966 191 PACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (397)
Q Consensus 191 ~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (397)
--|+|+|+|.|.| |.+||++|++|+-+|-..
T Consensus 6 yDviViGaG~~Gl~~A~~La~~G~~V~vlE~~~ 38 (297)
T d2bcgg1 6 YDVIVLGTGITECILSGLLSVDGKKVLHIDKQD 38 (297)
T ss_dssp CSEEEECCSHHHHHHHHHHHHTTCCEEEECSSS
T ss_pred CCEEEECcCHHHHHHHHHHHHCCCCEEEEcCCC
Confidence 3599999999999 889999999999999754
|
| >d1dcta_ c.66.1.26 (A:) DNA methylase HaeIII {Haemophilus aegyptius [TaxId: 197575]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNA methylase HaeIII species: Haemophilus aegyptius [TaxId: 197575]
Probab=91.82 E-value=0.87 Score=40.00 Aligned_cols=38 Identities=21% Similarity=0.211 Sum_probs=31.8
Q ss_pred CeEEEecCCCChhHHHHHHcCCeEE-EEeCCHHHHHHHH
Q 015966 191 PACLVPGAGLGRLALEISHLGFISQ-GNEFSYYMMICSS 228 (397)
Q Consensus 191 ~rVLvPGCGlGRLa~eLA~~Gf~V~-GnD~S~~ML~~s~ 228 (397)
.+||++=||.|.+..-|-+.||++. ++|+......+.+
T Consensus 1 mk~~~lF~G~Gg~~~gl~~aG~~~~~a~e~d~~a~~~~~ 39 (324)
T d1dcta_ 1 MNLISLFSGAGGLDLGFQKAGFRIICANEYDKSIWKTYE 39 (324)
T ss_dssp CEEEEESCSSCHHHHHHHHHTCEEEEEEECCHHHHHHHH
T ss_pred CeEEEeCcCcCHHHHHHHHCCCEEEEEEeCCHHHHHHHH
Confidence 3799999999999888888899876 9999998876544
|
| >d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=91.75 E-value=0.03 Score=46.43 Aligned_cols=41 Identities=24% Similarity=0.342 Sum_probs=31.2
Q ss_pred CCCCeEEEecC--CCChhHHHHHH-cCC-eEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGA--GLGRLALEISH-LGF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGC--GlGRLa~eLA~-~Gf-~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.|| |.|.++..+++ .|+ .|.+.|.+..=+..++
T Consensus 26 ~~g~~vlV~G~~G~vG~~~~~~~~~~g~~~V~~~~~~~~~~~~~~ 70 (170)
T d1jvba2 26 DPTKTLLVVGAGGGLGTMAVQIAKAVSGATIIGVDVREEAVEAAK 70 (170)
T ss_dssp CTTCEEEEETTTSHHHHHHHHHHHHHTCCEEEEEESSHHHHHHHH
T ss_pred CCCCEEEEEeccccceeeeeecccccccccccccccchhhHHHHH
Confidence 36789999997 47888777665 575 8999999987665444
|
| >d1g55a_ c.66.1.26 (A:) DNMT2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: C5 cytosine-specific DNA methylase, DCM domain: DNMT2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.75 E-value=0.32 Score=43.48 Aligned_cols=39 Identities=10% Similarity=0.032 Sum_probs=31.9
Q ss_pred CCeEEEecCCCChhHHHHHHcCC--e-EEEEeCCHHHHHHHH
Q 015966 190 PPACLVPGAGLGRLALEISHLGF--I-SQGNEFSYYMMICSS 228 (397)
Q Consensus 190 ~~rVLvPGCGlGRLa~eLA~~Gf--~-V~GnD~S~~ML~~s~ 228 (397)
+.+||++=||.|.+..-|.+.|+ + |-++|+......+.+
T Consensus 2 p~kv~~lF~G~Gg~~~gl~~aG~~~~~~~a~E~~~~a~~~~~ 43 (343)
T d1g55a_ 2 PLRVLELYSGVGGMHHALRESCIPAQVVAAIDVNTVANEVYK 43 (343)
T ss_dssp CEEEEEETCTTCHHHHHHHHHTCSEEEEEEECCCHHHHHHHH
T ss_pred CCEEEEcCcCccHHHHHHHHcCCCCeEEEEEECCHHHHHHHH
Confidence 46899999999988877777797 3 469999998887655
|
| >d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhdH species: Escherichia coli [TaxId: 562]
Probab=91.49 E-value=0.18 Score=42.89 Aligned_cols=95 Identities=14% Similarity=0.094 Sum_probs=60.7
Q ss_pred CCCeEEEecC--CCChhHHHHHHc-CCeEEEEeCCHHHHHHHHhhhhcccccCccccccccccccCCCCcccCccccccC
Q 015966 189 SPPACLVPGA--GLGRLALEISHL-GFISQGNEFSYYMMICSSFILNHTETAGEWNIYPWIHSNCNSLSDSDQLRPVSIP 265 (397)
Q Consensus 189 ~~~rVLvPGC--GlGRLa~eLA~~-Gf~V~GnD~S~~ML~~s~fiLn~~~~~~~~~IyPfi~~~Sn~~s~~~qlr~v~iP 265 (397)
++.+||+-|+ |+|..+..||+. |++|.+.--|......++-+ .+. ..|.
T Consensus 31 ~~~~vlV~gasGGVG~~aiQlAk~~Ga~Via~~~~~~k~~~~~~l--Gad----~vi~---------------------- 82 (177)
T d1o89a2 31 QDGEIVVTGASGGVGSTAVALLHKLGYQVVAVSGRESTHEYLKSL--GAS----RVLP---------------------- 82 (177)
T ss_dssp GGCEEEESSTTSHHHHHHHHHHHHTTCCEEEEESCGGGHHHHHHH--TEE----EEEE----------------------
T ss_pred CCCcEEEEEccccchHHHHHHHHHcCCCeEEEecchhHHHHHHhh--ccc----cccc----------------------
Confidence 3458999864 689999999887 99999999888876544421 110 1110
Q ss_pred CCCCCCCCCCCcceeEecccccccCCCCCCCCccEEEEeeccCChhhHHHHHHHHHHhccCCcEEEEecCC
Q 015966 266 DIHPASAGITEGFSMCGGDFVEVYSDPSQVGAWDAVVTCFFIDTAHNIVEYIEIISRILKDGGVWINLGPL 336 (397)
Q Consensus 266 Dv~p~~~~~~~~ls~~~GDF~ely~~~~~~~~fD~VvT~FFIDta~Ni~~yi~~I~~~LKPGG~wIN~GPL 336 (397)
.-..++.+.. .+..+|.|+- +.- -.++....++|++||.+|.+|.+
T Consensus 83 --------------~~~~~~~~~l----~~~~~~~vvD-----~Vg--g~~~~~~l~~l~~~Griv~~G~~ 128 (177)
T d1o89a2 83 --------------RDEFAESRPL----EKQVWAGAID-----TVG--DKVLAKVLAQMNYGGCVAACGLA 128 (177)
T ss_dssp --------------GGGSSSCCSS----CCCCEEEEEE-----SSC--HHHHHHHHHTEEEEEEEEECCCT
T ss_pred --------------cccHHHHHHH----HhhcCCeeEE-----Ecc--hHHHHHHHHHhccccceEeeccc
Confidence 0001111111 2356788753 332 25789999999999999998754
|
| >d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Hypothetical protein YhfP species: Bacillus subtilis [TaxId: 1423]
Probab=90.94 E-value=0.091 Score=44.34 Aligned_cols=37 Identities=19% Similarity=0.246 Sum_probs=30.2
Q ss_pred CCCeEEEec--CCCChhHHHHHHc-CCeEEEEeCCHHHHH
Q 015966 189 SPPACLVPG--AGLGRLALEISHL-GFISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPG--CGlGRLa~eLA~~-Gf~V~GnD~S~~ML~ 225 (397)
++.+||+-| -|.|..+..||+. |+.|.+.--|..-..
T Consensus 23 ~~~~VLV~gaaGgVG~~avQlAk~~Ga~Viat~~s~~k~~ 62 (167)
T d1tt7a2 23 EKGSVLVTGATGGVGGIAVSMLNKRGYDVVASTGNREAAD 62 (167)
T ss_dssp GGCCEEEESTTSHHHHHHHHHHHHHTCCEEEEESSSSTHH
T ss_pred CCCEEEEeCCcchHHHHHHHHHHHcCCceEEEecCHHHHH
Confidence 455799988 4899999999987 999999888765543
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.94 E-value=0.28 Score=42.58 Aligned_cols=86 Identities=9% Similarity=0.030 Sum_probs=53.5
Q ss_pred eeEecccccccCCCCCCCCccEEEEe--eccC---------ChhhHHHHHHHHHHhccCCcEEEEecCCcchhhhccCCC
Q 015966 279 SMCGGDFVEVYSDPSQVGAWDAVVTC--FFID---------TAHNIVEYIEIISRILKDGGVWINLGPLLYHFADLYGQE 347 (397)
Q Consensus 279 s~~~GDF~ely~~~~~~~~fD~VvT~--FFID---------ta~Ni~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~g~~ 347 (397)
.++.||-+++... -.++++|+|+|- |.+. -..-+..+++.++++|||||.++-++...|....
T Consensus 6 ~~~~~D~le~l~~-l~d~SIDliitDPPYn~~~~~~~~~~~y~~~~~~~~~e~~rvLk~~G~~~~~~~~~~~~~~----- 79 (279)
T d1eg2a_ 6 VYDVCDCLDTLAK-LPDDSVQLIICDPPYNIMLADWDDHMDYIGWAKRWLAEAERVLSPTGSIAIFGGLQYQGEA----- 79 (279)
T ss_dssp EEEECCHHHHHHT-SCTTCEEEEEECCCSBCCGGGGGTCSSHHHHHHHHHHHHHHHEEEEEEEEEEECSCCCCCT-----
T ss_pred eEEechHHHHHhh-CcCCCccEEEECCCCCCCcccccCHHHHHHHHHHHHHHHHHHhCCCccEEEecCccccccc-----
Confidence 4677888775321 236899999986 4431 1233567788999999999977754332222111
Q ss_pred CCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 348 DEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 348 ~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
........+..++...||.+...
T Consensus 80 ---~~~~~~~~~~~~~~~~~~~~~~~ 102 (279)
T d1eg2a_ 80 ---GSGDLISIISHMRQNSKMLLANL 102 (279)
T ss_dssp ---TBCCHHHHHHHHHHHCCCEEEEE
T ss_pred ---cccchhhHHHHHHhccCceeeee
Confidence 12233455667788899998663
|
| >d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Mouse (Mus musculus), class II [TaxId: 10090]
Probab=90.46 E-value=0.25 Score=41.51 Aligned_cols=41 Identities=17% Similarity=0.114 Sum_probs=34.1
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHc-CC-eEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGAGL-GRLALEISHL-GF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGCGl-GRLa~eLA~~-Gf-~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.|||. |-++..+|+. |. .|...|.+..=+..++
T Consensus 27 ~~G~~VlV~G~G~iGl~a~~~ak~~Ga~~Vi~~d~~~~r~~~a~ 70 (174)
T d1e3ia2 27 TPGSTCAVFGLGCVGLSAIIGCKIAGASRIIAIDINGEKFPKAK 70 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHTTCSEEEEECSCGGGHHHHH
T ss_pred CCCCEEEEECCChHHHHHHHHHHHhCCceeeeeccchHHHHHHH
Confidence 4788999999997 8888888876 87 6889999998876665
|
| >d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase {Myxococcus xanthus [TaxId: 34]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Protoporphyrinogen oxidase species: Myxococcus xanthus [TaxId: 34]
Probab=90.07 E-value=0.071 Score=44.65 Aligned_cols=30 Identities=27% Similarity=0.163 Sum_probs=27.1
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 015966 191 PACLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (397)
Q Consensus 191 ~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S 220 (397)
.+|+++|+|.+.| |+.|+++|++|+-+|-+
T Consensus 1 m~V~IIGaG~aGL~aA~~L~~~G~~V~vlE~~ 32 (347)
T d2ivda1 1 MNVAVVGGGISGLAVAHHLRSRGTDAVLLESS 32 (347)
T ss_dssp CCEEEECCBHHHHHHHHHHHTTTCCEEEECSS
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEecC
Confidence 3799999999999 78999999999999965
|
| >d1booa_ c.66.1.11 (A:) m.PvuII N4 cytosine-specific DNA methyltransferase {Proteus vulgaris [TaxId: 585]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.PvuII N4 cytosine-specific DNA methyltransferase species: Proteus vulgaris [TaxId: 585]
Probab=90.04 E-value=0.28 Score=43.20 Aligned_cols=52 Identities=10% Similarity=-0.082 Sum_probs=43.8
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHH
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSS 228 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~ 228 (397)
.+++.|.+.+.+ ++..||||=||+|..+..-.++|....|+|+|.....+|.
T Consensus 238 ~L~~rlI~~~s~----~gdiVlDpF~GSGTT~~AA~~lgR~~Ig~El~~~y~~~a~ 289 (320)
T d1booa_ 238 KLPEFFIRMLTE----PDDLVVDIFGGSNTTGLVAERESRKWISFEMKPEYVAASA 289 (320)
T ss_dssp HHHHHHHHHHCC----TTCEEEETTCTTCHHHHHHHHTTCEEEEEESCHHHHHHHH
T ss_pred HHHHHhhhhccc----CCCEEEecCCCCcHHHHHHHHcCCcEEEEeCCHHHHHHHH
Confidence 366666665542 6789999999999999999999999999999999987765
|
| >d1b5qa1 c.3.1.2 (A:5-293,A:406-463) Polyamine oxidase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Polyamine oxidase species: Maize (Zea mays) [TaxId: 4577]
Probab=89.88 E-value=0.085 Score=42.50 Aligned_cols=30 Identities=27% Similarity=0.245 Sum_probs=26.5
Q ss_pred eEEEecCCCChh--HHHHHHcCC-eEEEEeCCH
Q 015966 192 ACLVPGAGLGRL--ALEISHLGF-ISQGNEFSY 221 (397)
Q Consensus 192 rVLvPGCGlGRL--a~eLA~~Gf-~V~GnD~S~ 221 (397)
+|+++|+|.+.| |+.|+++|+ +|+-+|-+.
T Consensus 2 ~V~IIGaG~aGL~aA~~L~~~G~~~V~vlE~~~ 34 (347)
T d1b5qa1 2 RVIVVGAGMSGISAAKRLSEAGITDLLILEATD 34 (347)
T ss_dssp CEEEECCBHHHHHHHHHHHHTTCCCEEEECSSS
T ss_pred CEEEECCcHHHHHHHHHHHhCCCCcEEEEECCC
Confidence 699999999998 788999998 699998764
|
| >d1ae1a_ c.2.1.2 (A:) Tropinone reductase {Jimsonweed (Datura stramonium), I [TaxId: 4076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Tropinone reductase species: Jimsonweed (Datura stramonium), I [TaxId: 4076]
Probab=89.68 E-value=2.2 Score=37.43 Aligned_cols=37 Identities=19% Similarity=0.139 Sum_probs=30.4
Q ss_pred CCCeEEEecCCCC---hhHHHHHHcCCeEEEEeCCHHHHH
Q 015966 189 SPPACLVPGAGLG---RLALEISHLGFISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGCGlG---RLa~eLA~~Gf~V~GnD~S~~ML~ 225 (397)
++++||+-|+..| .+|..|++.|++|..++.+..-|.
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~~V~i~~r~~~~l~ 44 (258)
T d1ae1a_ 5 KGTTALVTGGSKGIGYAIVEELAGLGARVYTCSRNEKELD 44 (258)
T ss_dssp TTCEEEEESCSSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 5789999999765 457788888999999999986553
|
| >d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase, N-terminal domain {Klebsiella pneumoniae [TaxId: 573]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: UDP-galactopyranose mutase, N-terminal domain domain: UDP-galactopyranose mutase, N-terminal domain species: Klebsiella pneumoniae [TaxId: 573]
Probab=89.59 E-value=0.099 Score=47.87 Aligned_cols=33 Identities=15% Similarity=0.143 Sum_probs=29.2
Q ss_pred CCeEEEecCCCChh--HHHHHHcCCeEEEEeCCHH
Q 015966 190 PPACLVPGAGLGRL--ALEISHLGFISQGNEFSYY 222 (397)
Q Consensus 190 ~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~~ 222 (397)
..+|+++|||...| |++|+++|++|+-+|-+.+
T Consensus 2 ~KKI~IIGaG~sGL~aA~~L~k~G~~V~viEk~~~ 36 (314)
T d2bi7a1 2 SKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDH 36 (314)
T ss_dssp CCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSSS
T ss_pred CCEEEEECCcHHHHHHHHHHHhCCCCEEEEECCCC
Confidence 46899999999998 7889999999999997653
|
| >d1m6ex_ c.66.1.35 (X:) Salicylic acid carboxyl methyltransferase (SAMT) {Clarkia breweri [TaxId: 36903]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Salicylic acid carboxyl methyltransferase (SAMT) domain: Salicylic acid carboxyl methyltransferase (SAMT) species: Clarkia breweri [TaxId: 36903]
Probab=89.39 E-value=1.7 Score=40.88 Aligned_cols=64 Identities=17% Similarity=0.271 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHhccCCcEEEE--ec-----C------Ccchh-----hhc--cCC-C-C------CccccCCHHHHHHH
Q 015966 311 HNIVEYIEIISRILKDGGVWIN--LG-----P------LLYHF-----ADL--YGQ-E-D------EMSIELSLEDVKRV 362 (397)
Q Consensus 311 ~Ni~~yi~~I~~~LKPGG~wIN--~G-----P------LlYh~-----~d~--~g~-~-~------~~~ieLS~EEl~~l 362 (397)
.|...+|+.=++-|+|||++|- +| | .+|.. .+. .|. . . -..+..|.||++.+
T Consensus 186 ~D~~~FL~~Ra~ELv~GG~mvl~~~gr~~~~~~~~~~~~~~~~l~~al~dmv~eGlI~eek~dsfn~P~Y~ps~eEv~~~ 265 (359)
T d1m6ex_ 186 EDHALFLRCRAQEVVPGGRMVLTILGRRSEDRASTECCLIWQLLAMALNQMVSEGLIEEEKMDKFNIPQYTPSPTEVEAE 265 (359)
T ss_dssp HHHHHHHHHHHHHBCTTCEEEEEEEECSSSSSSSTTTSTTTHHHHHHHHHHHHTTCSCCSTTGGGCCCCBCCCSHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEeccCCCCCCCCccchHHHHHHHHHHHHHHcCCCCHHHHHhccCccccCCHHHHHHH
Confidence 3566677777888999999993 22 1 11210 010 111 0 0 01344699999999
Q ss_pred HHh-CCCEEEEEe
Q 015966 363 ALH-YGFEFEKEK 374 (397)
Q Consensus 363 l~~-~GFeii~e~ 374 (397)
+++ -.|+|.+.+
T Consensus 266 ie~~gsF~i~~~e 278 (359)
T d1m6ex_ 266 ILKEGSFLIDHIE 278 (359)
T ss_dssp HHHTTTBCCEEEE
T ss_pred hccCCCeeeeeeE
Confidence 985 668888855
|
| >d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Benzyl alcohol dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=89.18 E-value=0.16 Score=42.36 Aligned_cols=41 Identities=17% Similarity=0.119 Sum_probs=29.8
Q ss_pred CCCCeEEEecCCC-ChhHHHHHHc-CCe-EEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGAGL-GRLALEISHL-GFI-SQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGCGl-GRLa~eLA~~-Gf~-V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.|||. |.++..+|+. |.. |.+.|.+..=+..++
T Consensus 27 ~~g~~VlI~G~G~iG~~~~~~ak~~g~~~v~~~~~~~~k~~~a~ 70 (174)
T d1f8fa2 27 TPASSFVTWGAGAVGLSALLAAKVCGASIIIAVDIVESRLELAK 70 (174)
T ss_dssp CTTCEEEEESCSHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHH
T ss_pred CCCCEEEEeCCCHHHhhhhhcccccccceeeeeccHHHHHHHHH
Confidence 4788999999975 4456777655 875 567899987666554
|
| >d1c0pa1 c.4.1.2 (A:999-1193,A:1289-1361) D-aminoacid oxidase, N-terminal domain {Rhodotorula gracilis [TaxId: 5286]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: D-aminoacid oxidase, N-terminal domain domain: D-aminoacid oxidase, N-terminal domain species: Rhodotorula gracilis [TaxId: 5286]
Probab=89.12 E-value=0.14 Score=42.98 Aligned_cols=32 Identities=25% Similarity=0.255 Sum_probs=28.3
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 015966 189 SPPACLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (397)
Q Consensus 189 ~~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S 220 (397)
...+|+|+|+|...| |+.|+++|++|+-+|-.
T Consensus 5 ~~~kVvVIGaGiaGl~~A~~L~~~G~~V~vier~ 38 (268)
T d1c0pa1 5 SQKRVVVLGSGVIGLSSALILARKGYSVHILARD 38 (268)
T ss_dssp CSCEEEEECCSHHHHHHHHHHHHTTCEEEEEESS
T ss_pred CCCcEEEECccHHHHHHHHHHHHCCCCEEEEeCC
Confidence 456899999999988 89999999999999953
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=88.78 E-value=0.37 Score=41.21 Aligned_cols=77 Identities=8% Similarity=0.109 Sum_probs=48.9
Q ss_pred eeEecccccccCCCCCCCCccEEEEe--eccC-----Chhh-------HHHHHHHHHHhccCCcEEEEecCCcchhhhcc
Q 015966 279 SMCGGDFVEVYSDPSQVGAWDAVVTC--FFID-----TAHN-------IVEYIEIISRILKDGGVWINLGPLLYHFADLY 344 (397)
Q Consensus 279 s~~~GDF~ely~~~~~~~~fD~VvT~--FFID-----ta~N-------i~~yi~~I~~~LKPGG~wIN~GPLlYh~~d~~ 344 (397)
.+..||.+++... -.++++|+|+|- |.+. ...+ +.+.++.++++|||||..+.++.
T Consensus 6 ~i~~gDcle~l~~-lpd~sVdliitdPPY~~~~~~~d~~~~~~~y~~~~~~~~~e~~rvLk~~g~~~~~~~--------- 75 (256)
T d1g60a_ 6 KIHQMNCFDFLDQ-VENKSVQLAVIDPPYNLSKADWDSFDSHNEFLAFTYRWIDKVLDKLDKDGSLYIFNT--------- 75 (256)
T ss_dssp SEEECCHHHHHHH-SCTTCEEEEEECCCCSSCSSGGGCCSSHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC---------
T ss_pred EEEeccHHHHHhh-CcCCCcCEEEECCCCCCCcCcCcCCCCHHHHHHHHHHHHHHhhhccccCcccccccC---------
Confidence 4688998885321 125889999996 5432 2112 33467789999999997653211
Q ss_pred CCCCCccccCCHHHHHHHHHhCCCEEEEE
Q 015966 345 GQEDEMSIELSLEDVKRVALHYGFEFEKE 373 (397)
Q Consensus 345 g~~~~~~ieLS~EEl~~ll~~~GFeii~e 373 (397)
......+..++...||.....
T Consensus 76 --------~~~~~~~~~~~~~~g~~~~~~ 96 (256)
T d1g60a_ 76 --------PFNCAFICQYLVSKGMIFQNW 96 (256)
T ss_dssp --------HHHHHHHHHHHHHTTCEEEEE
T ss_pred --------chhhhhhhhhhhcccceeeee
Confidence 112335666788889987663
|
| >d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Putative zinc-binding alcohol dehydrogenase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.71 E-value=0.3 Score=41.07 Aligned_cols=35 Identities=29% Similarity=0.256 Sum_probs=27.4
Q ss_pred CCeEEEec--CCCChhHHHHHH-cCCe-EEEEeCCHHHH
Q 015966 190 PPACLVPG--AGLGRLALEISH-LGFI-SQGNEFSYYMM 224 (397)
Q Consensus 190 ~~rVLvPG--CGlGRLa~eLA~-~Gf~-V~GnD~S~~ML 224 (397)
+.+||+-| -|.|..+..||+ .|.. |.+..-|..-.
T Consensus 31 ~etVLI~gaaGgVG~~aiQlak~~Ga~~vi~~~~~~e~~ 69 (187)
T d1vj1a2 31 NQTMVVSGAAGACGSLAGQIGHLLGCSRVVGICGTQEKC 69 (187)
T ss_dssp CCEEEESSTTSTTGGGHHHHHHHTTCSEEEEEESSHHHH
T ss_pred CCEEEEECCCchhhHHHHHHHHHcCCcceecccchHHHH
Confidence 46899988 589999999999 5875 66777776554
|
| >d1g60a_ c.66.1.11 (A:) Methyltransferase mboII {Moraxella bovis [TaxId: 476]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: Methyltransferase mboII species: Moraxella bovis [TaxId: 476]
Probab=88.54 E-value=0.52 Score=40.22 Aligned_cols=55 Identities=20% Similarity=0.167 Sum_probs=45.5
Q ss_pred HHHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhh
Q 015966 173 PILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFIL 231 (397)
Q Consensus 173 pIl~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiL 231 (397)
.+++.|-+.+.+ ++..||||=||.|..+..-.++|-...|+|++..-...|+.-+
T Consensus 200 ~L~~~lI~~~s~----~gd~VlDpF~GSGTT~~aa~~~~R~~ig~El~~~y~~~a~~Rl 254 (256)
T d1g60a_ 200 DLIERIIRASSN----PNDLVLDCFMGSGTTAIVAKKLGRNFIGCDMNAEYVNQANFVL 254 (256)
T ss_dssp HHHHHHHHHHCC----TTCEEEESSCTTCHHHHHHHHTTCEEEEEESCHHHHHHHHHHH
T ss_pred hHHHHHHHHhCC----CCCEEEECCCCchHHHHHHHHcCCeEEEEeCCHHHHHHHHHHH
Confidence 356666666643 6789999999999999999999999999999999888776444
|
| >d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=88.40 E-value=0.21 Score=40.59 Aligned_cols=41 Identities=10% Similarity=0.043 Sum_probs=30.9
Q ss_pred CCCCeEEEecCCCC-hhHHHHHHc-CCeEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGAGLG-RLALEISHL-GFISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGCGlG-RLa~eLA~~-Gf~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.|+|.- .++..+|+. |.+|.+.+-+..=+..++
T Consensus 26 ~~g~~vlv~G~G~iG~~a~~~a~~~g~~v~~~~~~~~r~~~~k 68 (168)
T d1rjwa2 26 KPGEWVAIYGIGGLGHVAVQYAKAMGLNVVAVDIGDEKLELAK 68 (168)
T ss_dssp CTTCEEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHHHHH
T ss_pred CCCCEEEEeecccchhhhhHHHhcCCCeEeccCCCHHHhhhhh
Confidence 47789999999864 446666655 899999999997765444
|
| >d1ps9a3 c.4.1.1 (A:331-465,A:628-671) 2,4-dienoyl-CoA reductase, middle domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: 2,4-dienoyl-CoA reductase, middle domain species: Escherichia coli [TaxId: 562]
Probab=88.33 E-value=0.18 Score=43.20 Aligned_cols=34 Identities=21% Similarity=0.103 Sum_probs=30.3
Q ss_pred CCCCeEEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015966 188 ESPPACLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (397)
Q Consensus 188 ~~~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (397)
..+.+|+++|+|...| |+.||++|++|+-.|-+.
T Consensus 41 ~~~k~V~IIGaGPAGL~AA~~la~~G~~Vtl~E~~~ 76 (179)
T d1ps9a3 41 VQKKNLAVVGAGPAGLAFAINAAARGHQVTLFDAHS 76 (179)
T ss_dssp SSCCEEEEECCSHHHHHHHHHHHTTTCEEEEEESSS
T ss_pred CCCcEEEEECccHHHHHHHHHHHhhccceEEEeccC
Confidence 4678999999999999 788899999999999654
|
| >d2b9ea1 c.66.1.38 (A:133-425) NOL1R {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: NOL1/NOP2/sun domain: NOL1R species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.20 E-value=0.74 Score=41.81 Aligned_cols=40 Identities=8% Similarity=-0.050 Sum_probs=33.2
Q ss_pred CCCeEEEecCCCChhHHHHHHc---CCeEEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHL---GFISQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~---Gf~V~GnD~S~~ML~~s~ 228 (397)
++.+|||..||-|.=+..||.+ +..|.++|.|..=+...+
T Consensus 94 ~g~~vLD~cAapGgKt~~la~l~~~~~~i~a~d~~~~R~~~l~ 136 (293)
T d2b9ea1 94 PGSHVIDACAAPGNKTSHLAALLKNQGKIFAFDLDAKRLASMA 136 (293)
T ss_dssp TTCEEEESSCTTCHHHHHHHHHHTTCSEEEEEESCHHHHHHHH
T ss_pred ccceEEecccchhhHHHHHHHHhcCCceEeeecCCHHHHHHHH
Confidence 6779999999999988888865 568999999987765444
|
| >d1i4wa_ c.66.1.24 (A:) Transcription factor sc-mtTFB {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: rRNA adenine dimethylase-like domain: Transcription factor sc-mtTFB species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.76 E-value=0.4 Score=44.36 Aligned_cols=37 Identities=11% Similarity=-0.203 Sum_probs=32.5
Q ss_pred CCCeEEEecCCCChhHHHHHHcC--CeEEEEeCCHHHHH
Q 015966 189 SPPACLVPGAGLGRLALEISHLG--FISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGCGlGRLa~eLA~~G--f~V~GnD~S~~ML~ 225 (397)
.+..||++|.|.|-|+..|..+| ..|+++|....++.
T Consensus 43 ~~~~VlEIGPG~G~LT~~Ll~~~~~~~v~~iE~D~~~~~ 81 (322)
T d1i4wa_ 43 EELKVLDLYPGVGIQSAIFYNKYCPRQYSLLEKRSSLYK 81 (322)
T ss_dssp TTCEEEEESCTTCHHHHHHHHHHCCSEEEEECCCHHHHH
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCCCEEEEEECCHHHHH
Confidence 56789999999999999998874 48999999998764
|
| >d1bg6a2 c.2.1.6 (A:4-187) N-(1-D-carboxylethyl)-L-norvaline dehydrogenase {Arthrobacter, strain 1c [TaxId: 1663]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: N-(1-D-carboxylethyl)-L-norvaline dehydrogenase species: Arthrobacter, strain 1c [TaxId: 1663]
Probab=86.01 E-value=2.3 Score=34.13 Aligned_cols=35 Identities=17% Similarity=0.060 Sum_probs=28.9
Q ss_pred CeEEEecCCCChh--HHHHHHcCCeEEEEeCCHHHHH
Q 015966 191 PACLVPGAGLGRL--ALEISHLGFISQGNEFSYYMMI 225 (397)
Q Consensus 191 ~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~~ML~ 225 (397)
.+|-++|+|.-.+ |..|+++|++|...|-+..=+.
T Consensus 2 k~iaIiGaG~~G~~~A~~l~~~G~~V~~~~r~~~~~~ 38 (184)
T d1bg6a2 2 KTYAVLGLGNGGHAFAAYLALKGQSVLAWDIDAQRIK 38 (184)
T ss_dssp CEEEEECCSHHHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 5799999997554 7788999999999999876543
|
| >d1eg2a_ c.66.1.11 (A:) m.RsrI N6 adenosine-specific DNA methyltransferase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: S-adenosyl-L-methionine-dependent methyltransferases superfamily: S-adenosyl-L-methionine-dependent methyltransferases family: Type II DNA methylase domain: m.RsrI N6 adenosine-specific DNA methyltransferase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=85.82 E-value=0.66 Score=40.06 Aligned_cols=57 Identities=18% Similarity=-0.004 Sum_probs=45.7
Q ss_pred HHHHHHhhCCCCCCCCCCeEEEecCCCChhHHHHHHcCCeEEEEeCCHHHHHHHHhhhhcc
Q 015966 174 ILEELDALFPNRSKESPPACLVPGAGLGRLALEISHLGFISQGNEFSYYMMICSSFILNHT 234 (397)
Q Consensus 174 Il~~L~~~~p~~~~~~~~rVLvPGCGlGRLa~eLA~~Gf~V~GnD~S~~ML~~s~fiLn~~ 234 (397)
+++.|-+.+.+ ++..||||=||.|..+..-.++|-...|+|++..-..+|.--++..
T Consensus 196 L~~~~I~~~s~----~gdiVLDpF~GSGTT~~Aa~~lgR~~ig~El~~~y~~~a~~Ri~~~ 252 (279)
T d1eg2a_ 196 VIERLVRALSH----PGSTVLDFFAGSGVTARVAIQEGRNSICTDAAPVFKEYYQKQLTFL 252 (279)
T ss_dssp HHHHHHHHHSC----TTCEEEETTCTTCHHHHHHHHHTCEEEEEESSTHHHHHHHHHHHHC
T ss_pred HHHHHHHhhcC----CCCEEEecCCCCcHHHHHHHHhCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 45666555542 5779999999999999999999999999999999888776545443
|
| >d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Archaeon Aeropyrum pernix [TaxId: 56636]
Probab=85.51 E-value=0.36 Score=39.80 Aligned_cols=40 Identities=10% Similarity=0.099 Sum_probs=29.5
Q ss_pred CCCeEEEecCCC-ChhHHHHHH-cCC-eEEEEeCCHHHHHHHH
Q 015966 189 SPPACLVPGAGL-GRLALEISH-LGF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 189 ~~~rVLvPGCGl-GRLa~eLA~-~Gf-~V~GnD~S~~ML~~s~ 228 (397)
++.+||+.|+|. |.++..+|+ +|. .|.+.|.+..=+..++
T Consensus 32 ~g~~vli~GaG~vG~~~~~~a~~~g~~~vv~~~~~~~k~~~~~ 74 (172)
T d1h2ba2 32 PGAYVAIVGVGGLGHIAVQLLKVMTPATVIALDVKEEKLKLAE 74 (172)
T ss_dssp TTCEEEEECCSHHHHHHHHHHHHHCCCEEEEEESSHHHHHHHH
T ss_pred CCCEEEEeCCChHHHHHHHHHHhhcCcccccccchhHHHHHHh
Confidence 678999999975 455677775 475 7789999987665544
|
| >d2v5za1 c.3.1.2 (A:6-289,A:402-500) Monoamine oxidase B {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Monoamine oxidase B species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.85 E-value=0.23 Score=42.89 Aligned_cols=29 Identities=21% Similarity=0.184 Sum_probs=26.3
Q ss_pred EEEecCCCChh--HHHHHHcCCeEEEEeCCH
Q 015966 193 CLVPGAGLGRL--ALEISHLGFISQGNEFSY 221 (397)
Q Consensus 193 VLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~ 221 (397)
|+|+|+|.+.| |+.|+++|++|+-+|-+.
T Consensus 2 ViVIGaG~aGL~aA~~L~~~G~~V~VlE~~~ 32 (383)
T d2v5za1 2 VVVVGGGISGMAAAKLLHDSGLNVVVLEARD 32 (383)
T ss_dssp EEEECCBHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEECCCHHHHHHHHHHHhCCCCEEEEecCC
Confidence 89999999999 889999999999999644
|
| >d1nffa_ c.2.1.2 (A:) Putative oxidoreductase Rv2002 {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Tyrosine-dependent oxidoreductases domain: Putative oxidoreductase Rv2002 species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=83.60 E-value=8.8 Score=33.16 Aligned_cols=37 Identities=14% Similarity=-0.026 Sum_probs=30.7
Q ss_pred CCCeEEEecCCCC---hhHHHHHHcCCeEEEEeCCHHHHH
Q 015966 189 SPPACLVPGAGLG---RLALEISHLGFISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGCGlG---RLa~eLA~~Gf~V~GnD~S~~ML~ 225 (397)
+++.||+-|++.| -+|..||+.|++|..++.+..-+.
T Consensus 5 ~gK~alITGas~GIG~aia~~la~~G~~V~~~~r~~~~~~ 44 (244)
T d1nffa_ 5 TGKVALVSGGARGMGASHVRAMVAEGAKVVFGDILDEEGK 44 (244)
T ss_dssp TTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 5678999998765 467888899999999999987664
|
| >d1vpda2 c.2.1.6 (A:3-163) Hydroxyisobutyrate dehydrogenase {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Hydroxyisobutyrate dehydrogenase species: Salmonella typhimurium [TaxId: 90371]
Probab=83.39 E-value=1.6 Score=35.48 Aligned_cols=34 Identities=9% Similarity=0.079 Sum_probs=25.7
Q ss_pred eEEEecCCC--ChhHHHHHHcCCeEEEEeCCHHHHH
Q 015966 192 ACLVPGAGL--GRLALEISHLGFISQGNEFSYYMMI 225 (397)
Q Consensus 192 rVLvPGCGl--GRLa~eLA~~Gf~V~GnD~S~~ML~ 225 (397)
||=++|+|. ..+|.-|++.||.|.+.|.+..-+.
T Consensus 2 kIgiIGlG~MG~~~A~~L~~~G~~V~~~d~~~~~~~ 37 (161)
T d1vpda2 2 KVGFIGLGIMGKPMSKNLLKAGYSLVVSDRNPEAIA 37 (161)
T ss_dssp EEEEECCSTTHHHHHHHHHHTTCEEEEECSCHHHHH
T ss_pred EEEEEehhHHHHHHHHHHHHCCCeEEEEeCCcchhH
Confidence 577777765 2346667788999999999987754
|
| >d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: 6-phosphogluconate dehydrogenase-like, N-terminal domain domain: Prephenate dehydrogenase TyrA species: Haemophilus influenzae [TaxId: 727]
Probab=83.31 E-value=2.7 Score=33.32 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=25.5
Q ss_pred CCCeEEEecCCCChh----HHHHHHcCCeEEEEeCCHHH
Q 015966 189 SPPACLVPGAGLGRL----ALEISHLGFISQGNEFSYYM 223 (397)
Q Consensus 189 ~~~rVLvPGCGlGRL----a~eLA~~Gf~V~GnD~S~~M 223 (397)
.-.+|.++| |+|.. |..|.+.||+|.+.|.....
T Consensus 8 ~~~kI~iIG-g~G~mG~~la~~L~~~G~~V~~~d~~~~~ 45 (152)
T d2pv7a2 8 DIHKIVIVG-GYGKLGGLFARYLRASGYPISILDREDWA 45 (152)
T ss_dssp TCCCEEEET-TTSHHHHHHHHHHHTTTCCEEEECTTCGG
T ss_pred CCCeEEEEc-CCCHHHHHHHHHHHHcCCCcEeccccccc
Confidence 456999999 56655 55556679999999987654
|
| >d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Siroheme synthase N-terminal domain-like domain: Siroheme synthase CysG, domain 1 species: Salmonella typhimurium [TaxId: 90371]
Probab=82.96 E-value=2.2 Score=32.66 Aligned_cols=36 Identities=25% Similarity=0.211 Sum_probs=24.0
Q ss_pred CCCeEEEecCCCC--hhHHHHHHcCCeEEEE--eCCHHHH
Q 015966 189 SPPACLVPGAGLG--RLALEISHLGFISQGN--EFSYYMM 224 (397)
Q Consensus 189 ~~~rVLvPGCGlG--RLa~eLA~~Gf~V~Gn--D~S~~ML 224 (397)
++.+||++|.|-= |-+..|.+.|..|+.+ +.+....
T Consensus 11 ~~k~vlVvG~G~va~~ka~~ll~~ga~v~v~~~~~~~~~~ 50 (113)
T d1pjqa1 11 RDRDCLIVGGGDVAERKARLLLEAGARLTVNALTFIPQFT 50 (113)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHTTBEEEEEESSCCHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEEEEeccCChHHH
Confidence 5779999998753 2345566668887755 4555543
|
| >d2voua1 c.3.1.2 (A:2-163,A:292-394) Dihydroxypyridine hydroxylase DhpH {Arthrobacter nicotinovorans [TaxId: 29320]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: FAD/NAD(P)-binding domain superfamily: FAD/NAD(P)-binding domain family: FAD-linked reductases, N-terminal domain domain: Dihydroxypyridine hydroxylase DhpH species: Arthrobacter nicotinovorans [TaxId: 29320]
Probab=82.22 E-value=0.49 Score=40.01 Aligned_cols=32 Identities=25% Similarity=0.212 Sum_probs=28.1
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeCC
Q 015966 189 SPPACLVPGAGLGRL--ALEISHLGFISQGNEFS 220 (397)
Q Consensus 189 ~~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S 220 (397)
...||+++|+|...| |..|+++|++|+-+|=+
T Consensus 3 ~~~kV~IiGaG~aGl~~A~~L~~~G~~v~v~Er~ 36 (265)
T d2voua1 3 TTDRIAVVGGSISGLTAALMLRDAGVDVDVYERS 36 (265)
T ss_dssp CCSEEEEECCSHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCcEEEECcCHHHHHHHHHHHHCCCCEEEEeCC
Confidence 457999999999998 77889999999999954
|
| >d1p3da1 c.5.1.1 (A:11-106) UDP-N-acetylmuramate-alanine ligase MurC {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: MurCD N-terminal domain superfamily: MurCD N-terminal domain family: MurCD N-terminal domain domain: UDP-N-acetylmuramate-alanine ligase MurC species: Haemophilus influenzae [TaxId: 727]
Probab=82.15 E-value=0.3 Score=37.61 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=27.2
Q ss_pred CCCeEEEe---cCCCChhHHHHHHcCCeEEEEeCCH
Q 015966 189 SPPACLVP---GAGLGRLALEISHLGFISQGNEFSY 221 (397)
Q Consensus 189 ~~~rVLvP---GCGlGRLa~eLA~~Gf~V~GnD~S~ 221 (397)
...+|..+ |+|.+-||..|+++||.|+|.|...
T Consensus 7 ~~~~ihfiGigG~GMs~LA~~L~~~G~~VsGSD~~~ 42 (96)
T d1p3da1 7 RVQQIHFIGIGGAGMSGIAEILLNEGYQISGSDIAD 42 (96)
T ss_dssp TCCEEEEETTTSTTHHHHHHHHHHHTCEEEEEESCC
T ss_pred hCCEEEEEEECHHHHHHHHHHHHhCCCEEEEEeCCC
Confidence 56688888 4566788999999999999999853
|
| >d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Alcohol dehydrogenase-like, C-terminal domain domain: Alcohol dehydrogenase species: Frog (Rana perezi) [TaxId: 8403]
Probab=81.73 E-value=0.95 Score=37.54 Aligned_cols=41 Identities=17% Similarity=0.017 Sum_probs=32.0
Q ss_pred CCCCeEEEecCCCChh-HHHHHH-cCC-eEEEEeCCHHHHHHHH
Q 015966 188 ESPPACLVPGAGLGRL-ALEISH-LGF-ISQGNEFSYYMMICSS 228 (397)
Q Consensus 188 ~~~~rVLvPGCGlGRL-a~eLA~-~Gf-~V~GnD~S~~ML~~s~ 228 (397)
+++.+||+.|||-..+ +..+|+ +|. .|.++|.+..-|..++
T Consensus 26 ~~G~~VlV~GaGgvGl~a~~~ak~~G~~~Vi~~d~~~~kl~~a~ 69 (174)
T d1p0fa2 26 TPGSTCAVFGLGGVGFSAIVGCKAAGASRIIGVGTHKDKFPKAI 69 (174)
T ss_dssp CTTCEEEEECCSHHHHHHHHHHHHHTCSEEEEECSCGGGHHHHH
T ss_pred CCCCEEEEECCCchhHHHHHHHHHcCCceeeccCChHHHHHHHH
Confidence 4788999999986544 666665 486 6999999998887665
|
| >d1djqa3 c.4.1.1 (A:341-489,A:646-729) Trimethylamine dehydrogenase, middle domain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Nucleotide-binding domain superfamily: Nucleotide-binding domain family: N-terminal domain of adrenodoxin reductase-like domain: Trimethylamine dehydrogenase, middle domain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=80.99 E-value=0.62 Score=39.89 Aligned_cols=35 Identities=17% Similarity=0.205 Sum_probs=31.0
Q ss_pred CCCeEEEecCCCChh--HHHHHHcCCeEEEEeCCHHH
Q 015966 189 SPPACLVPGAGLGRL--ALEISHLGFISQGNEFSYYM 223 (397)
Q Consensus 189 ~~~rVLvPGCGlGRL--a~eLA~~Gf~V~GnD~S~~M 223 (397)
.+.+||++|+|-..| |..|+++|++|+-+|.+...
T Consensus 48 ~~k~VvIIGaGpAGl~aA~~l~~~G~~v~l~E~~~~~ 84 (233)
T d1djqa3 48 NKDSVLIVGAGPSGSEAARVLMESGYTVHLTDTAEKI 84 (233)
T ss_dssp SCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSSST
T ss_pred CCceEEEEcccHHHHHHHHHHHHhccceeeEeecccc
Confidence 678999999999998 67789999999999987654
|
| >d1pjca1 c.2.1.4 (A:136-303) L-alanine dehydrogenase {Phormidium lapideum [TaxId: 32060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: NAD(P)-binding Rossmann-fold domains superfamily: NAD(P)-binding Rossmann-fold domains family: Formate/glycerate dehydrogenases, NAD-domain domain: L-alanine dehydrogenase species: Phormidium lapideum [TaxId: 32060]
Probab=80.29 E-value=0.65 Score=39.63 Aligned_cols=37 Identities=19% Similarity=0.207 Sum_probs=29.7
Q ss_pred CCCeEEEecCCCChh-HHHHHH-cCCeEEEEeCCHHHHH
Q 015966 189 SPPACLVPGAGLGRL-ALEISH-LGFISQGNEFSYYMMI 225 (397)
Q Consensus 189 ~~~rVLvPGCGlGRL-a~eLA~-~Gf~V~GnD~S~~ML~ 225 (397)
++.+||++|+|.-.+ |...|+ +|..|+..|.+..-|.
T Consensus 31 ~pa~V~ViGaGvaG~~A~~~A~~lGA~V~~~D~~~~~l~ 69 (168)
T d1pjca1 31 KPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINVERLS 69 (168)
T ss_dssp CCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred CCcEEEEECCChHHHHHHHHHhhCCCEEEEEeCcHHHHH
Confidence 578999999997555 555554 4999999999988764
|