Citrus Sinensis ID: 015969

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------
MGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRTDWNKEVEKARNRMDEWGDKTELLLKE
cccccHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHEEccccccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHEEEHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccccccc
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccccHccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEcHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccHHHHcHHHccccHHHHHHHHEHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccccccccc
mgsatetlcgqaygaqkyDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFlqaqsiispsaYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGnelgaahpksckFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGipigcllgfkfnlgtkgiwsgmigGTLIQTIILVYVTLRTDWNKEVEKARNRMDEWGDKTELLLKE
mgsatetlcgqayGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRTDWNKEVEKarnrmdewgdktelllke
MGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGEssaiasaaaiFVFGLIPQIFAYAVNFPIQKFLQaqsiispsayisaaTLVVHVLLSWVAIFKlgwgllgaslvlslswwIIVAAQFVYILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFsvivvtsislalsvilailvlilRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRTDWNKEVEKARNRMDEWGDKTELLLKE
******TLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRTDWNKEV********************
MGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRTDWNKEVEK******************
MGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRTDWNKEVEKARNRMDEWGDKTELLLKE
**SATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRTDWNKEVEKARNRMDEW**********
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGWGLLGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLxxxxxxxxxxxxxxxxxxxxxTELLLKE
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query397 2.2.26 [Sep-21-2011]
Q9LYT3507 Protein TRANSPARENT TESTA no no 0.987 0.773 0.505 1e-112
Q9SIA3476 MATE efflux family protei no no 0.944 0.787 0.391 7e-73
Q9SIA5476 MATE efflux family protei no no 0.949 0.792 0.379 2e-70
Q9SIA4476 MATE efflux family protei no no 0.957 0.798 0.384 3e-69
Q8GXM8476 MATE efflux family protei no no 0.949 0.792 0.361 2e-68
Q9LUH3469 MATE efflux family protei no no 0.944 0.799 0.373 6e-68
Q9LUH2477 MATE efflux family protei no no 0.931 0.775 0.383 7e-67
Q8RWF5483 MATE efflux family protei no no 0.954 0.784 0.357 3e-62
Q9SIA1477 MATE efflux family protei no no 0.947 0.788 0.354 3e-59
Q8K0H1567 Multidrug and toxin extru yes no 0.952 0.666 0.327 6e-46
>sp|Q9LYT3|TT12_ARATH Protein TRANSPARENT TESTA 12 OS=Arabidopsis thaliana GN=TT12 PE=2 SV=1 Back     alignment and function desciption
 Score =  404 bits (1037), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 198/392 (50%), Positives = 278/392 (70%)

Query: 1   MGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIA 60
           M SA +T+CGQAYGA++Y  +G+  QR+ V+  A  + L  +Y +S  IL  +G+S AIA
Sbjct: 109 MASAVQTVCGQAYGARQYSSMGIICQRAMVLHLAAAVFLTFLYWYSGPILKTMGQSVAIA 168

Query: 61  SAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGW 120
               IF  G+IPQI+A+A+  P+Q+FLQAQ+I++P AY+S    ++H LL+W+    L +
Sbjct: 169 HEGQIFARGMIPQIYAFALACPMQRFLQAQNIVNPLAYMSLGVFLLHTLLTWLVTNVLDF 228

Query: 121 GLLGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAVMLC 180
           GLLGA+L+LS SWW++VA   +YIL+S  CK+TWTGFS +AF G+W + KL+ ASAVMLC
Sbjct: 229 GLLGAALILSFSWWLLVAVNGMYILMSPNCKETWTGFSTRAFRGIWPYFKLTVASAVMLC 288

Query: 181 LEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHP 240
           LEIWY Q +V+I+GLL N  I LD++SICM    W     +G +AA SVRV NELGA +P
Sbjct: 289 LEIWYNQGLVIISGLLSNPTISLDAISICMYYLNWDMQFMLGLSAAISVRVSNELGAGNP 348

Query: 241 KSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILN 300
           +    SV+VV   ++ +S +L ++VL+ R  +S AFT  + V  +V++L P LA+S+ LN
Sbjct: 349 RVAMLSVVVVNITTVLISSVLCVIVLVFRVGLSKAFTSDAEVIAAVSDLFPLLAVSIFLN 408

Query: 301 GIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQ 360
           GIQP+LSGVA+G GWQA VAYVN+  YY+IG+PIGC+LGFK +LG  GIW GMI G ++Q
Sbjct: 409 GIQPILSGVAIGSGWQAVVAYVNLVTYYVIGLPIGCVLGFKTSLGVAGIWWGMIAGVILQ 468

Query: 361 TIILVYVTLRTDWNKEVEKARNRMDEWGDKTE 392
           T+ L+ +TL+T+W  EVE A  R+     + +
Sbjct: 469 TLTLIVLTLKTNWTSEVENAAQRVKTSATENQ 500
May be involved in vacuolar transport of flavonoids.
Arabidopsis thaliana (taxid: 3702)
>sp|Q9SIA3|MATE6_ARATH MATE efflux family protein 6 OS=Arabidopsis thaliana GN=DTXL2 PE=3 SV=2 Back     alignment and function description
>sp|Q9SIA5|DTX1_ARATH MATE efflux family protein DTX1 OS=Arabidopsis thaliana GN=DTX1 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA4|MATE5_ARATH MATE efflux family protein 5 OS=Arabidopsis thaliana GN=DTXL1 PE=3 SV=1 Back     alignment and function description
>sp|Q8GXM8|MATE7_ARATH MATE efflux family protein 7 OS=Arabidopsis thaliana GN=DTXL3 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH3|LAL5_ARATH MATE efflux family protein LAL5 OS=Arabidopsis thaliana GN=LAL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUH2|ALF5_ARATH MATE efflux family protein ALF5 OS=Arabidopsis thaliana GN=ALF5 PE=2 SV=1 Back     alignment and function description
>sp|Q8RWF5|MATE9_ARATH MATE efflux family protein 9 OS=Arabidopsis thaliana GN=DTXL5 PE=2 SV=1 Back     alignment and function description
>sp|Q9SIA1|MATE8_ARATH MATE efflux family protein 8 OS=Arabidopsis thaliana GN=DTXL4 PE=3 SV=2 Back     alignment and function description
>sp|Q8K0H1|S47A1_MOUSE Multidrug and toxin extrusion protein 1 OS=Mus musculus GN=Slc47a1 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query397
255554911 510 multidrug resistance pump, putative [Ric 1.0 0.778 0.780 0.0
359483371 504 PREDICTED: protein TRANSPARENT TESTA 12 0.987 0.777 0.795 1e-176
302144146431 unnamed protein product [Vitis vinifera] 0.987 0.909 0.795 1e-176
224115726 501 predicted protein [Populus trichocarpa] 1.0 0.792 0.743 1e-173
147768419477 hypothetical protein VITISV_039920 [Viti 0.964 0.802 0.804 1e-172
255554909497 multidrug resistance pump, putative [Ric 1.0 0.798 0.755 1e-171
359483373 509 PREDICTED: protein TRANSPARENT TESTA 12 1.0 0.779 0.753 1e-169
302144149435 unnamed protein product [Vitis vinifera] 1.0 0.912 0.753 1e-169
224115730432 predicted protein [Populus trichocarpa] 1.0 0.918 0.745 1e-169
255554915 503 multidrug resistance pump, putative [Ric 0.992 0.783 0.725 1e-168
>gi|255554911|ref|XP_002518493.1| multidrug resistance pump, putative [Ricinus communis] gi|223542338|gb|EEF43880.1| multidrug resistance pump, putative [Ricinus communis] Back     alignment and taxonomy information
 Score =  639 bits (1648), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/397 (78%), Positives = 350/397 (88%)

Query: 1   MGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIA 60
           MGSA ETLCGQAYGA KY+MLGVYLQRSA++L ATGIPL +IY FSKQILLLLGES  IA
Sbjct: 114 MGSAVETLCGQAYGAHKYEMLGVYLQRSAILLAATGIPLTIIYSFSKQILLLLGESKEIA 173

Query: 61  SAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGW 120
           S AAIFV+GLIPQIFAYAVNFPIQKFLQAQSI+ PSAYISA TL VHVLLSW+AI+KLGW
Sbjct: 174 SEAAIFVYGLIPQIFAYAVNFPIQKFLQAQSIVFPSAYISAGTLAVHVLLSWLAIYKLGW 233

Query: 121 GLLGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAVMLC 180
           GLLGASLVLS SWWIIVAAQFVYI+ S RCK+TWTGF+  AFSGLWDFLKLSTASAVMLC
Sbjct: 234 GLLGASLVLSFSWWIIVAAQFVYIVSSPRCKRTWTGFTWNAFSGLWDFLKLSTASAVMLC 293

Query: 181 LEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHP 240
           LEIWYYQI+VLIAGLL NAEI LDSLSICM I GWV+M+AVGFNAAASVRV NELGA HP
Sbjct: 294 LEIWYYQILVLIAGLLKNAEIALDSLSICMAIVGWVYMVAVGFNAAASVRVSNELGAGHP 353

Query: 241 KSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILN 300
           KS  F+V+VVT  S  +++IL I+ L+LRN +SY FT G+TVA +VAELSPFLALS++L+
Sbjct: 354 KSAAFAVVVVTLSSFLIALILGIVALVLRNYLSYIFTSGTTVAKAVAELSPFLALSIVLS 413

Query: 301 GIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQ 360
           GIQPVLSGVAVGCGWQAFVAYVNVGCYY +GIP+GC+LGF F+LG KGIWSGM+ GT++Q
Sbjct: 414 GIQPVLSGVAVGCGWQAFVAYVNVGCYYFVGIPLGCVLGFTFDLGDKGIWSGMLAGTVLQ 473

Query: 361 TIILVYVTLRTDWNKEVEKARNRMDEWGDKTELLLKE 397
           T+IL++ T RTDW KEVEKA+NR+  W + TE  LKE
Sbjct: 474 TLILLWFTYRTDWKKEVEKAQNRLKRWDNITEPFLKE 510

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|359483371|ref|XP_002274027.2| PREDICTED: protein TRANSPARENT TESTA 12 isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|302144146|emb|CBI23251.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224115726|ref|XP_002317107.1| predicted protein [Populus trichocarpa] gi|222860172|gb|EEE97719.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|147768419|emb|CAN60226.1| hypothetical protein VITISV_039920 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255554909|ref|XP_002518492.1| multidrug resistance pump, putative [Ricinus communis] gi|223542337|gb|EEF43879.1| multidrug resistance pump, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|359483373|ref|XP_002273739.2| PREDICTED: protein TRANSPARENT TESTA 12 [Vitis vinifera] Back     alignment and taxonomy information
>gi|302144149|emb|CBI23254.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|224115730|ref|XP_002317108.1| predicted protein [Populus trichocarpa] gi|222860173|gb|EEE97720.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255554915|ref|XP_002518495.1| multidrug resistance pump, putative [Ricinus communis] gi|223542340|gb|EEF43882.1| multidrug resistance pump, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query397
TAIR|locus:2089955506 AT3G21690 "AT3G21690" [Arabido 1.0 0.784 0.607 3.2e-129
TAIR|locus:2027322503 AT1G11670 "AT1G11670" [Arabido 0.997 0.787 0.571 6.3e-124
TAIR|locus:2036848501 AT1G61890 "AT1G61890" [Arabido 1.0 0.792 0.571 2.7e-123
TAIR|locus:2144421498 AT5G38030 "AT5G38030" [Arabido 0.974 0.777 0.484 1.2e-95
TAIR|locus:2088822500 AT3G26590 "AT3G26590" [Arabido 0.974 0.774 0.481 1.4e-94
TAIR|locus:2010401522 RSH2 "AT1G12950" [Arabidopsis 0.974 0.741 0.469 1.6e-93
TAIR|locus:2015368484 AT1G47530 "AT1G47530" [Arabido 0.974 0.799 0.448 1.7e-89
TAIR|locus:2028115515 AT1G23300 "AT1G23300" [Arabido 0.982 0.757 0.439 4.1e-88
TAIR|locus:2168210486 AT5G65380 "AT5G65380" [Arabido 0.977 0.798 0.433 8.9e-86
TAIR|locus:2126036542 AT4G00350 "AT4G00350" [Arabido 0.992 0.726 0.441 2.4e-85
TAIR|locus:2089955 AT3G21690 "AT3G21690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1268 (451.4 bits), Expect = 3.2e-129, P = 3.2e-129
 Identities = 241/397 (60%), Positives = 287/397 (72%)

Query:     1 MGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGEXXXXX 60
             MGSA ETLCGQAYG +KY+MLGVYLQRS V+LT TG+ L +IY+FS+ ILL LGE     
Sbjct:   110 MGSAVETLCGQAYGGRKYEMLGVYLQRSTVLLTLTGLLLTLIYVFSEPILLFLGESPAIA 169

Query:    61 XXXXXFVFGLIPQIFAYAVNFPIQKFLQXXXXXXXXXXXXXXTLVVHVLLSWVAIFKXXX 120
                  FV+GLIPQIFAYA NFPIQKFLQ              TL VH+LLSW+A++K   
Sbjct:   170 SAASLFVYGLIPQIFAYAANFPIQKFLQSQSIVAPSAYISTATLFVHLLLSWLAVYKLGM 229

Query:   121 XXXXXXXXXXXXXXIIVAAQFVYILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAVMLC 180
                           IIV AQFVYI+ SERC++TW GFS+QAFSGLW F KLS ASAVMLC
Sbjct:   230 GLLGASLVLSLSWWIIVVAQFVYIVTSERCRETWRGFSVQAFSGLWSFFKLSAASAVMLC 289

Query:   181 LEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHP 240
             LE WY+QI+VL+AGLL+N E+ LDSLSICMTI+GWVFMI+VGFNAA SVRV NELGA +P
Sbjct:   290 LETWYFQILVLLAGLLENPELALDSLSICMTISGWVFMISVGFNAAISVRVSNELGAGNP 349

Query:   241 KSCKFXXXXXXXXXXXXXXXXXXXXXXXRNVMSYAFTGGSTVADSVAELSPFLALSVILN 300
             KS  F                       R+V+SYAFT G  V+D+V++L P LA++++LN
Sbjct:   350 KSAAFSVIIVNIYSLITCVILAIVILACRDVLSYAFTEGKEVSDAVSDLCPLLAVTLVLN 409

Query:   301 GIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQ 360
             GIQPVLSGVAVGCGWQ FVA VNVGCYY+IGIP+G L GF FN G KGIW+GMIGGT+IQ
Sbjct:   410 GIQPVLSGVAVGCGWQTFVAKVNVGCYYIIGIPLGALFGFYFNFGAKGIWTGMIGGTVIQ 469

Query:   361 TIILVYVTLRTDWNKEVEKARNRMDEWGDKTELLLKE 397
             T IL +VT RTDW KEVE+A  R+D+W +K + ++ E
Sbjct:   470 TFILAWVTFRTDWTKEVEEASKRLDKWSNKKQEVVPE 506
GO:0005215 "transporter activity" evidence=ISS
GO:0005886 "plasma membrane" evidence=ISM
GO:0006855 "drug transmembrane transport" evidence=IEA
GO:0015238 "drug transmembrane transporter activity" evidence=IEA
GO:0015297 "antiporter activity" evidence=IEA;ISS
GO:0016020 "membrane" evidence=IEA;ISS
GO:0055085 "transmembrane transport" evidence=IEA
GO:0005774 "vacuolar membrane" evidence=IDA
GO:0009610 "response to symbiotic fungus" evidence=RCA
GO:0015824 "proline transport" evidence=RCA
TAIR|locus:2027322 AT1G11670 "AT1G11670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2036848 AT1G61890 "AT1G61890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2144421 AT5G38030 "AT5G38030" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2088822 AT3G26590 "AT3G26590" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2010401 RSH2 "AT1G12950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2015368 AT1G47530 "AT1G47530" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2028115 AT1G23300 "AT1G23300" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168210 AT5G65380 "AT5G65380" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2126036 AT4G00350 "AT4G00350" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query397
cd13132436 cd13132, MATE_eukaryotic, Eukaryotic members of th 1e-148
TIGR00797342 TIGR00797, matE, putative efflux protein, MATE fam 3e-57
COG0534455 COG0534, NorM, Na+-driven multidrug efflux pump [D 2e-40
cd13131435 cd13131, MATE_NorM_like, Subfamily of the multidru 3e-36
cd13137432 cd13137, MATE_NorM_like, Subfamily of the multidru 7e-31
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 5e-26
cd13133438 cd13133, MATE_like_7, Uncharacterized subfamily of 2e-22
pfam01554161 pfam01554, MatE, MatE 3e-22
cd13134438 cd13134, MATE_like_8, Uncharacterized subfamily of 1e-19
cd13138431 cd13138, MATE_yoeA_like, Subfamily of the multidru 4e-19
PRK01766456 PRK01766, PRK01766, multidrug efflux protein; Revi 2e-18
pfam01554161 pfam01554, MatE, MatE 2e-17
cd13142444 cd13142, MATE_like_12, Uncharacterized subfamily o 2e-16
cd13136424 cd13136, MATE_DinF_like, DinF and similar proteins 5e-14
cd13143426 cd13143, MATE_MepA_like, Subfamily of the multidru 3e-12
cd13139448 cd13139, MATE_like_14, Uncharacterized subfamily o 2e-11
PRK00187464 PRK00187, PRK00187, multidrug efflux protein NorA; 3e-08
cd13146433 cd13146, MATE_like_6, Uncharacterized subfamily of 1e-06
cd13147441 cd13147, MATE_MJ0709_like, Uncharacterized subfami 6e-06
cd13135429 cd13135, MATE_like_9, Uncharacterized subfamily of 3e-05
cd12082420 cd12082, MATE_like, Multidrug and toxic compound e 7e-05
cd13140435 cd13140, MATE_like_1, Uncharacterized subfamily of 3e-04
cd13141443 cd13141, MATE_like_13, Uncharacterized subfamily o 0.004
>gnl|CDD|240537 cd13132, MATE_eukaryotic, Eukaryotic members of the multidrug and toxic compound extrusion (MATE) family Back     alignment and domain information 
 Score =  427 bits (1100), Expect = e-148
 Identities = 185/379 (48%), Positives = 263/379 (69%), Gaps = 1/379 (0%)

Query: 1   MGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIA 60
           + SA +TLCGQA+GA+ Y ++GVYLQR+ VIL    +P+ ++++ ++ ILLLLG+   IA
Sbjct: 59  LASALDTLCGQAFGAKNYKLVGVYLQRALVILLLCCVPISLLWLNTEPILLLLGQDPEIA 118

Query: 61  SAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFKLGW 120
             A  ++  LIP +FAYA+  P++++LQAQ I+ P  YIS   L++++LL+++ +F LG 
Sbjct: 119 RLAGEYLRWLIPGLFAYALFEPLKRYLQAQGIVLPLVYISLVALLLNILLNYLLVFVLGL 178

Query: 121 GLLGASLVLSLSWWIIVAAQFVYILLSERCKKTWTGFSLQAFSGLWDFLKLSTASAVMLC 180
           G +GA+L  S+S+W+IV    +YI  S+  K TW GFS +AF G   FLKL+  SA+MLC
Sbjct: 179 GFIGAALATSISYWLIVVLLLLYIFFSKGHKATWGGFSREAFRGWGPFLKLAIPSALMLC 238

Query: 181 LEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHP 240
           LE W ++I+VL+AGLL    + L + SIC+T    ++MI +G + AASVRVGNELGA +P
Sbjct: 239 LEWWAFEILVLLAGLLP-GTVALAAQSICLTTTSLLYMIPLGISIAASVRVGNELGAGNP 297

Query: 241 KSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILN 300
           K  K + IV   +SL + V++AIL+L+LR+V +Y FT    V   VA+L P LAL  I +
Sbjct: 298 KRAKLAAIVALILSLVIGVVVAILLLVLRDVWAYLFTSDEEVIALVADLLPILALFQIFD 357

Query: 301 GIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQ 360
           G+Q VLSGV  GCG Q   AYVN+  YYLIG+P+G LL F   LG KG+W G+I G ++Q
Sbjct: 358 GLQAVLSGVLRGCGRQKLGAYVNLVAYYLIGLPVGLLLAFVLGLGLKGLWIGLIAGLILQ 417

Query: 361 TIILVYVTLRTDWNKEVEK 379
            +IL+ + LRTDW+KE EK
Sbjct: 418 AVILLLIILRTDWDKEAEK 436

The integral membrane proteins from the MATE family are involved in exporting metabolites across the cell membrane and are responsible for multidrug resistance (MDR) in many bacteria and animals. MATE has also been identified as a large multigene family in plants, where the proteins are linked to disease resistance. A number of family members are involved in the synthesis of peptidoglycan components in bacteria. This subfamily, which is restricted to eukaryotes, contains vertebrate solute transporters responsible for secretion of cationic drugs across the brush border membranes, yeast proteins located in the vacuole membrane, and plant proteins involved in disease resistance and iron homeostatis under osmotic stress. Length = 436
>gnl|CDD|233130 TIGR00797, matE, putative efflux protein, MATE family Back     alignment and domain information
>gnl|CDD|223608 COG0534, NorM, Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>gnl|CDD|240536 cd13131, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Vibrio cholerae NorM Back     alignment and domain information
>gnl|CDD|240542 cd13137, MATE_NorM_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Thermotoga marina NorM Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240538 cd13133, MATE_like_7, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240539 cd13134, MATE_like_8, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240543 cd13138, MATE_yoeA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Bacillus subtilis yoeA Back     alignment and domain information
>gnl|CDD|234981 PRK01766, PRK01766, multidrug efflux protein; Reviewed Back     alignment and domain information
>gnl|CDD|190033 pfam01554, MatE, MatE Back     alignment and domain information
>gnl|CDD|240547 cd13142, MATE_like_12, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240541 cd13136, MATE_DinF_like, DinF and similar proteins, a subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins Back     alignment and domain information
>gnl|CDD|240548 cd13143, MATE_MepA_like, Subfamily of the multidrug and toxic compound extrusion (MATE)-like proteins similar to Streptococcus aureus MepA Back     alignment and domain information
>gnl|CDD|240544 cd13139, MATE_like_14, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|166843 PRK00187, PRK00187, multidrug efflux protein NorA; Provisional Back     alignment and domain information
>gnl|CDD|240551 cd13146, MATE_like_6, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240552 cd13147, MATE_MJ0709_like, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins, similar to Methanocaldococcus jannaschii MJ0709 Back     alignment and domain information
>gnl|CDD|240540 cd13135, MATE_like_9, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240527 cd12082, MATE_like, Multidrug and toxic compound extrusion family and similar proteins Back     alignment and domain information
>gnl|CDD|240545 cd13140, MATE_like_1, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information
>gnl|CDD|240546 cd13141, MATE_like_13, Uncharacterized subfamily of the multidrug and toxic compound extrusion (MATE) proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 397
COG0534455 NorM Na+-driven multidrug efflux pump [Defense mec 100.0
PRK10189478 MATE family multidrug exporter; Provisional 100.0
PRK00187464 multidrug efflux protein NorA; Provisional 100.0
PRK01766456 multidrug efflux protein; Reviewed 100.0
PRK09575453 vmrA multidrug efflux pump VmrA; Reviewed 100.0
PRK10367441 DNA-damage-inducible SOS response protein; Provisi 100.0
TIGR01695502 mviN integral membrane protein MviN. This model re 100.0
TIGR02900488 spore_V_B stage V sporulation protein B. SpoVB is 100.0
TIGR00797342 matE putative efflux protein, MATE family. The MAT 100.0
PRK15099416 O-antigen translocase; Provisional 100.0
KOG1347473 consensus Uncharacterized membrane protein, predic 100.0
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 100.0
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.97
COG0534 455 NorM Na+-driven multidrug efflux pump [Defense mec 99.95
PRK00187 464 multidrug efflux protein NorA; Provisional 99.95
PRK10367 441 DNA-damage-inducible SOS response protein; Provisi 99.94
PRK10189 478 MATE family multidrug exporter; Provisional 99.94
PRK10459492 colanic acid exporter; Provisional 99.94
PRK01766 456 multidrug efflux protein; Reviewed 99.93
PRK09575 453 vmrA multidrug efflux pump VmrA; Reviewed 99.93
COG2244480 RfbX Membrane protein involved in the export of O- 99.9
TIGR00797 342 matE putative efflux protein, MATE family. The MAT 99.85
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.84
TIGR02900 488 spore_V_B stage V sporulation protein B. SpoVB is 99.57
KOG1347 473 consensus Uncharacterized membrane protein, predic 99.57
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 99.49
TIGR01695 502 mviN integral membrane protein MviN. This model re 99.49
PF01554162 MatE: MatE; InterPro: IPR002528 Characterised memb 99.34
PRK15099 416 O-antigen translocase; Provisional 99.33
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 99.32
COG0728518 MviN Uncharacterized membrane protein, putative vi 99.3
PF03023451 MVIN: MviN-like protein; InterPro: IPR004268 This 99.29
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 98.91
PRK10459492 colanic acid exporter; Provisional 98.84
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 98.65
COG2244480 RfbX Membrane protein involved in the export of O- 98.63
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.59
PF01943273 Polysacc_synt: Polysaccharide biosynthesis protein 98.3
PF14667146 Polysacc_synt_C: Polysaccharide biosynthesis C-ter 98.3
PF07260 345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.22
COG4267467 Predicted membrane protein [Function unknown] 98.12
PF07260345 ANKH: Progressive ankylosis protein (ANKH); InterP 98.06
PF13440251 Polysacc_synt_3: Polysaccharide biosynthesis prote 97.95
PF04506549 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric 97.05
KOG2864530 consensus Nuclear division RFT1 protein [Cell cycl 96.97
COG4267 467 Predicted membrane protein [Function unknown] 86.14
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information 
Probab=100.00  E-value=4e-54  Score=405.21  Aligned_cols=377  Identities=25%  Similarity=0.392  Sum_probs=356.0

Q ss_pred             CcchhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHH
Q 015969            1 MGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVI-YIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAV   79 (397)
Q Consensus         1 l~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~   79 (397)
                      ++.|+++++||++|+||++++++..+++++++++++++.+++ +.+.++++.+++.++|+.+.+.+|+++..++.|+..+
T Consensus        72 l~~g~~~liaq~~Ga~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~  151 (455)
T COG0534          72 LGTGTTVLVAQAIGAGDRKKAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALL  151 (455)
T ss_pred             HHHhHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHH
Confidence            367899999999999999999999999999999999888866 8999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHH-hC-CCccchHHHHHHHHHHHHHHHHHHHHhccc-cccccCC
Q 015969           80 NFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFK-LG-WGLLGASLVLSLSWWIIVAAQFVYILLSER-CKKTWTG  156 (397)
Q Consensus        80 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~ili~~-~~-~g~~gaa~at~i~~~~~~~~~~~~~~~~~~-~~~~~~~  156 (397)
                      +.++.+.+|+.||+|.+++.+++++++|+++|++|+++ ++ +|+.|+++||++++.++.++..+++.++++ ......+
T Consensus       152 ~~~~~~~lr~~G~~~~~m~~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~  231 (455)
T COG0534         152 SFVLSGILRGLGDTKTPMYILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKK  231 (455)
T ss_pred             HHHHHHHHHhcCCCchhHHHHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhh
Confidence            99999999999999999999999999999999999998 68 999999999999999999999999998874 2222233


Q ss_pred             CchhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 015969          157 FSLQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELG  236 (397)
Q Consensus       157 ~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~g  236 (397)
                      ..+++++.+|++++.|.|..+++..+...+...+.+++++|  ++.+|+|+++.++.++.++++.|++++++++++|++|
T Consensus       232 ~~~~~~~~~~~i~~lG~p~~~~~~~~~~~~~~~~~~~~~~G--~~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~G  309 (455)
T COG0534         232 LLKPDRKLLKEILRLGLPIFLESLSESLGFLLLTLFVARLG--TVALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLG  309 (455)
T ss_pred             ccCCCHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            44567799999999999999999999999999999999999  7799999999999999999999999999999999999


Q ss_pred             cCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcc
Q 015969          237 AAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQ  316 (397)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~  316 (397)
                      +||+|++++..+.+..+++.++...+.+++++++++.++|++|+|+.+.+.+++++..+..++++++....+.+||.||+
T Consensus       310 a~~~~~a~~~~~~~~~~~~~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~  389 (455)
T COG0534         310 AGNYKRARRAARLALKLSLLIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDA  389 (455)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             chhHHHHHHHHHHhhHHHHHHHHHhccCCcchhhHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Q 015969          317 AFVAYVNVGCYYLIGIPIGCLLGFKFNLGTKGIWSGMIGGTLIQTIILVYVTLRTDWNKEVEKA  380 (397)
Q Consensus       317 ~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (397)
                      +.+++.++.+.|.+.+|+.|++.+.. +|..|+|+++..++.++.++..+++++.+|+++..+.
T Consensus       390 ~~~~~~~~~~~~~~~lp~~~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  452 (455)
T COG0534         390 KIPFIISLLSYWGFRLPLAYLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVAA  452 (455)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence            99999999999999999999998776 8999999999999999999999999998888765543

>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms] Back     alignment and domain information
>PRK00187 multidrug efflux protein NorA; Provisional Back     alignment and domain information
>PRK10367 DNA-damage-inducible SOS response protein; Provisional Back     alignment and domain information
>PRK10189 MATE family multidrug exporter; Provisional Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>PRK01766 multidrug efflux protein; Reviewed Back     alignment and domain information
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>TIGR00797 matE putative efflux protein, MATE family Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>TIGR02900 spore_V_B stage V sporulation protein B Back     alignment and domain information
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only] Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>TIGR01695 mviN integral membrane protein MviN Back     alignment and domain information
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters Back     alignment and domain information
>PRK15099 O-antigen translocase; Provisional Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only] Back     alignment and domain information
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>PRK10459 colanic acid exporter; Provisional Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only] Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide Back     alignment and domain information
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences Back     alignment and domain information
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein Back     alignment and domain information
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol [] Back     alignment and domain information
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information
>COG4267 Predicted membrane protein [Function unknown] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query397
3mkt_A460 Structure Of A Cation-Bound Multidrug And Toxin Com 1e-06
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound Extrusion (Mate) Transporter Length = 460 Back     alignment and structure 
Iteration: 1

 Score = 51.2 bits (121), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 50/221 (22%), Positives = 86/221 (38%), Gaps = 9/221 (4%)
Query: 143 YILLSERCK--KTWTGFSLQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAE 200
           YI+ S+R    K +  F       L    +L    A  L  E+  + ++ L+   L +  
Sbjct: 213 YIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGST- 271
Query: 201 IVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNELGAAHPKSCKFXXXXXXXXXXXXXXX 260
            V+ +  + +  +  VFM  +   AA S+RVG++LG    K                   
Sbjct: 272 -VVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLMTGLATACI 330
Query: 261 XXXXXXXXRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGWQAFVA 320
                   R  ++  +T    V     +L  F A+   ++ +Q V +G   G      + 
Sbjct: 331 TALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIF 390
Query: 321 YVNVGCYYLIGIPIGCLLGF-----KFNLGTKGIWSGMIGG 356
           +     Y+++G+P G +LG      +  LG KG W G I G
Sbjct: 391 HRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIG 431

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query397
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 1e-63
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Length = 460 Back     alignment and structure
 Score =  209 bits (535), Expect = 1e-63
 Identities = 81/377 (21%), Positives = 165/377 (43%), Gaps = 13/377 (3%)

Query: 1   MGSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIA 60
           +  A   +  Q  GA +   +   + +  ++     +P++ +   ++ I+  +    A+A
Sbjct: 67  LLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMA 126

Query: 61  SAAAIFVFGLIPQIFAYAVNFPIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIF-KLG 119
           +    ++  +I  + AY +   ++ F    S+  P+  I    L++++ L+W+ ++ K G
Sbjct: 127 TKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFG 186

Query: 120 ---WGLLGASLVLSLSWWIIVAAQFVYILLSERCK--KTWTGFSLQAFSGLWDFLKLSTA 174
               G +G  +  ++ +WI++     YI+ S+R    K +  F       L    +L   
Sbjct: 187 APELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLGFP 246

Query: 175 SAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNE 234
            A  L  E+  + ++ L+   L     V+ +  + +  +  VFM  +   AA S+RVG++
Sbjct: 247 VAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHK 304

Query: 235 LGAAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLA 294
           LG    K    +  V     LA + I A+L ++ R  ++  +T    V     +L  F A
Sbjct: 305 LGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAA 364

Query: 295 LSVILNGIQPVLSGVAVGCGWQAFVAYVNVGCYYLIGIPIGCLLGF-----KFNLGTKGI 349
           +   ++ +Q V +G   G      + +     Y+++G+P G +LG      +  LG KG 
Sbjct: 365 IYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGF 424

Query: 350 WSGMIGGTLIQTIILVY 366
           W G I G     ++L  
Sbjct: 425 WLGFIIGLSAAALMLGQ 441

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query397
3mkt_A460 Multi antimicrobial extrusion protein (Na(+)/drug 100.0
3mkt_A 460 Multi antimicrobial extrusion protein (Na(+)/drug 99.86
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure
Probab=100.00  E-value=5.2e-45  Score=347.70  Aligned_cols=369  Identities=21%  Similarity=0.391  Sum_probs=339.0

Q ss_pred             cchhhhHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHhHHHHHHHHH
Q 015969            2 GSATETLCGQAYGAQKYDMLGVYLQRSAVILTATGIPLMVIYIFSKQILLLLGESSAIASAAAIFVFGLIPQIFAYAVNF   81 (397)
Q Consensus         2 ~~~~~~~is~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~   81 (397)
                      ++|..+.++|++|++|+++.++.+++++.+..+++++.++++.+.++++.+++.+++..+.+..|++++.++.++..+..
T Consensus        68 ~~~~~~~is~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~  147 (460)
T 3mkt_A           68 LMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQ  147 (460)
T ss_dssp             HHHHGGGCTTTTSSSSTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999998877788899999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHH-h---CCCccchHHHHHHHHHHHHHHHHHHHHhcccccc-c-cC
Q 015969           82 PIQKFLQAQSIISPSAYISAATLVVHVLLSWVAIFK-L---GWGLLGASLVLSLSWWIIVAAQFVYILLSERCKK-T-WT  155 (397)
Q Consensus        82 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~ili~~-~---~~g~~gaa~at~i~~~~~~~~~~~~~~~~~~~~~-~-~~  155 (397)
                      .+++++|+.|+++.++..++++.++|+++++++++. +   ++|+.|+++|+.+++.+..++..++.+++++.++ + ++
T Consensus       148 ~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (460)
T 3mkt_A          148 ALRSFTDGMSLTKPAMVIGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFE  227 (460)
T ss_dssp             HHTTTTCTTSCCTTTHHHHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSC
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhh
Confidence            999999999999999999999999999999999975 4   6999999999999999999998888887653221 1 12


Q ss_pred             CCchhhhhhHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 015969          156 GFSLQAFSGLWDFLKLSTASAVMLCLEIWYYQIIVLIAGLLDNAEIVLDSLSICMTIAGWVFMIAVGFNAAASVRVGNEL  235 (397)
Q Consensus       156 ~~~~~~~~~~k~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~i~~~i~~~~~~~~~~~~~a~~~~vs~~~  235 (397)
                      +..+++++.+|++++++.|..+++.........++.+++++|  ++++++|+++.++.++...+..+++++..|.+++++
T Consensus       228 ~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g--~~~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~  305 (460)
T 3mkt_A          228 TFHKPQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLG--STVVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKL  305 (460)
T ss_dssp             CCCSSTTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTS--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            223456688999999999999999999999999999999997  668999999999999999999999999999999999


Q ss_pred             ccCChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccCchhHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCc
Q 015969          236 GAAHPKSCKFSVIVVTSISLALSVILAILVLILRNVMSYAFTGGSTVADSVAELSPFLALSVILNGIQPVLSGVAVGCGW  315 (397)
Q Consensus       236 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~  315 (397)
                      |++|++++++..+++.+....++++.+++++++++++..+|.+|+++.+.+.+++++++++.++.+++....+++++.||
T Consensus       306 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~  385 (460)
T 3mkt_A          306 GEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKD  385 (460)
T ss_dssp             HSSCCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGST
T ss_pred             cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHhhHHHHHHHHHh----cc-CCcchhhHHHHHHHHHHHHHHHHHHHhcC
Q 015969          316 QAFVAYVNVGCYYLIGIPIGCLLGFK----FN-LGTKGIWSGMIGGTLIQTIILVYVTLRTD  372 (397)
Q Consensus       316 ~~~~~~~~~~~~~~~~i~~~~~l~~~----~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~~~  372 (397)
                      ++.+++.++.+.+++++|+++++...    ++ +|..|+|+++.+++.+.+++..++++|+.
T Consensus       386 ~~~~~~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~~  447 (460)
T 3mkt_A          386 MTAIFHRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWLQ  447 (460)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSSC
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999779999999999776    66 89999999999999999888766655543
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00