Citrus Sinensis ID: 015981

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------
MKFAVKALSSGKARAGVVHLGSCPSPIETPCLLLSTRKGLPIFISPDLLSSLPSPDSNLLQFSPLHFSEGPSPKTISSIGGLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETPCGRRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQLSDQGSDRTKINLRATVYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIREAIKEGCFEQFQKKFVQSRREHLAADVVSV
ccEEEEEcccccccEEEEEEccccccccccccccccccccccccccccccccccccccEEEcccccccccccHHHHHHcccccccccccccccccccccEEEEcccccccccccEEEccccccccccHHHHHHHHHHccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHHcccccccccccccccccHHHHHHHHHccccccccccccccccccEEEccccccccccccccccccccccccEEEEcccccccccccccccccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccc
cEEEEEEccccccEEEEEEcccccccEccccEccccccccEccccHHHHHHHHHcccEEEEEccEEEEccccHHHHHHHccHHHHccccccEEcccccEEEEEHHHHHcccccccEEccccccccccHHHHHHHHHHHcccEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHHccccccccccEEEccccHHHHHHHHHHcccccccccccHcccccEEEEccccccccccccEEEccccccccEEEcccHHHcccccccccccccHHHHHccHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccccEcc
MKFAVKALSSgkaragvvhlgscpspietpclllstrkglpifispdllsslpspdsnllqfsplhfsegpspktissigglhqmvgLHEYGFAAVARDsiqclpecgstnktgasfetpcgrrlikpVEYMEMITSMKPNLWATLAdevpawannkrnktsvDRTVKWLDEciarspaggavfgsivggsniEERKRCAQEVAVRNVSGywiggfglgesmeerPSLLNavtdnlpkdwprmicglglpeEVLQGVAAGVDLFDSAYIYHLTIGGfaltfpldrtekndynyqlsdqgsdrtkinlratvyrkdatpivedcccytcqnHTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIREAIKEGCFEQFQKKFVQSRREHLAADVVSV
MKFAVKALssgkaragvvhlgscpspIETPCLLLSTRKGLPIFISPDLLSSLPSPDSNLLQFSPLHFSEGPSPKTISSIGGLHQMVGLHEYGFAAVARDSIQCLPECGstnktgasfetpcgrRLIKPVEYMEMITSMKPNLWATLADEVPawannkrnktsvdrtVKWLDECIarspaggavfgsivGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYnyqlsdqgsdrtkinLRATvyrkdatpivEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIREAIKEGCFEQFQKKFVQSRREHLAADVVSV
MKFAVKALSSGKARAGVVHLGSCPSPIETPCLLLSTRKGLPIFIspdllsslpspdsnllQFSPLHFSEGPSPKTISSIGGLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETPCGRRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQLSDQGSDRTKINLRATVYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIREAIKEGCFEQFQKKFVQSRREHLAADVVSV
**************AGVVHLGSCPSPIETPCLLLSTRKGLPIFISPDLL***************************SSIGGLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETPCGRRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQLS*****RTKINLRATVYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIREAIKEGCFEQFQKKFV**************
MKFAVKALSSGKARAGVVHLGSCPSPIETPCLLLSTRKGLPIFISPDLLSSLPSPDSNLLQFSPLHFSEGPSPKTISSIGGLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETPCGRRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQLSDQGSDRTKINLRATVYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIREAIKEGCFEQFQKKFVQSRREH********
**************AGVVHLGSCPSPIETPCLLLSTRKGLPIFISPDLLSSLPSPDSNLLQFSPLHFSEGPSPKTISSIGGLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETPCGRRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQLSDQGSDRTKINLRATVYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIREAIKEGCFEQFQKKFVQSRREHLAADVVSV
MKFAVKALSSGKARAGVVHLGSCPSPIETPCLLLSTRKGLPIFISPDLLSSLPSPDSNLLQFSPLHFSEGPSPKTISSIGGLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETPCGRRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQLSDQGSDRTKINLRATVYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIREAIKEGCFEQFQKKFVQSRREHLAAD****
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MKFAVKALSSGKARAGVVHLGSCPSPIETPCLLLSTRKGLPIFISPDLLSSLPSPDSNLLQFSPLHFSEGPSPKTISSIGGLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETPCGRRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAGGAVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQLSDQGSDRTKINLRATVYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIREAIKEGCFEQFQKKFVQSRREHLAADVVSV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query397 2.2.26 [Sep-21-2011]
Q28DX0413 Queuine tRNA-ribosyltrans yes no 0.924 0.888 0.340 2e-47
Q6DF96415 Queuine tRNA-ribosyltrans N/A no 0.926 0.886 0.334 2e-47
B7Q5K1394 Queuine tRNA-ribosyltrans N/A no 0.906 0.913 0.323 1e-46
B8ZXI1415 Queuine tRNA-ribosyltrans yes no 0.921 0.881 0.319 4e-46
Q5ZM96425 Queuine tRNA-ribosyltrans yes no 0.753 0.703 0.326 1e-45
Q9H974415 Queuine tRNA-ribosyltrans yes no 0.750 0.718 0.347 1e-44
Q5R998415 Queuine tRNA-ribosyltrans yes no 0.750 0.718 0.347 1e-44
B3MA91417 Queuine tRNA-ribosyltrans N/A no 0.871 0.829 0.301 4e-41
B3RNT0369 Queuine tRNA-ribosyltrans N/A no 0.889 0.956 0.310 7e-41
Q16RF5421 Queuine tRNA-ribosyltrans N/A no 0.921 0.869 0.303 1e-40
>sp|Q28DX0|QTRD1_XENTR Queuine tRNA-ribosyltransferase subunit qtrtd1 OS=Xenopus tropicalis GN=qtrtd1 PE=2 SV=1 Back     alignment and function desciption
 Score =  190 bits (483), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 138/405 (34%), Positives = 212/405 (52%), Gaps = 38/405 (9%)

Query: 1   MKFAVKALSSGKARAGVV-HLG-SCPSPIETPCLLLSTRKGLPIFISPDLLSSLPS-PDS 57
           MK ++  +++G AR GV+ ++G +    +E P  LL T+ G P  ++ D L ++   P  
Sbjct: 1   MKLSISKVANG-ARLGVISNIGRNGDKTLEVPGCLLYTKTGSPPHLTHDTLQTIEGVPAV 59

Query: 58  NLLQFSPLHFSEGPSPKTISSIGGLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASF 117
             +  S L   +    +    IG   +  G+ +        D +   P   +TNK   S 
Sbjct: 60  THITLSTLAEHQEVLEEYKEGIG---KFAGMPDAVLYCSTHDPVSPCPTGYNTNKA-VSL 115

Query: 118 ETPCGRRLIKPVEYMEMITSMKPNLWATLAD-EV-PAWANNKRNKTSVDRTVKWLDECIA 175
               GR  +   +++     ++P+ +  L+D EV P   + KR K SVDRT+ +LDEC+ 
Sbjct: 116 WGAGGRIEMTAQKFISAQRVLRPDWFQCLSDGEVTPGGNSRKRVKKSVDRTLAFLDECLQ 175

Query: 176 -----RSPAGGAVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLN 230
                       + G++ GG  +EER R A+E A R V G+ + GF  G S E+  SL++
Sbjct: 176 LLSGHEDLKPCVLIGAVEGGDLLEERLRSARETAKRPVGGFLLDGFH-GGSAEKELSLIS 234

Query: 231 AVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFP-------- 282
           AVT  LP+D PR I G+G P+EVL+ V  GVDLFDS + Y +T  G AL F         
Sbjct: 235 AVTAALPEDKPRFIHGMGRPDEVLECVQRGVDLFDSCFPYRVTERGCALIFSHCYRPDPE 294

Query: 283 ---LDRTEKN------DYNYQLSDQGSDRTK-----INLRATVYRKDATPIVEDCCCYTC 328
              L+++E +      D   +  +  +DR +     I L+   +R+D  P++E C CY C
Sbjct: 295 TAVLEKSETSGAERNGDVGAESEEPDADRAEMTSFEICLKEKRFREDFRPLLEGCSCYCC 354

Query: 329 QNHTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIREAIKEG 373
           +NH++AY++HLL   E+LA ILL IHN  HY  FF SIR A+++G
Sbjct: 355 RNHSRAYVHHLLAAKELLAGILLMIHNFQHYFRFFGSIRAALRDG 399
Interacts with qtrt1 to form an active queuine tRNA-ribosyltransferase. This enzyme exchanges queuine for the guanine at the wobble position of tRNAs with GU(N) anticodons (tRNA-Asp, -Asn, -His and -Tyr), thereby forming the hypermodified nucleoside queuosine (Q) (7-(((4,5-cis-dihydroxy-2-cyclopenten-1-yl)amino)methyl)-7-deazaguanosine).
Xenopus tropicalis (taxid: 8364)
EC: 2EC: .EC: 4EC: .EC: 2EC: .EC: 2EC: 9
>sp|Q6DF96|QTRD1_XENLA Queuine tRNA-ribosyltransferase subunit qtrtd1 OS=Xenopus laevis GN=qtrtd1 PE=2 SV=1 Back     alignment and function description
>sp|B7Q5K1|QTRD1_IXOSC Queuine tRNA-ribosyltransferase subunit QTRTD1 homolog OS=Ixodes scapularis GN=ISCW021855 PE=3 SV=1 Back     alignment and function description
>sp|B8ZXI1|QTRD1_MOUSE Queuine tRNA-ribosyltransferase subunit QTRTD1 OS=Mus musculus GN=Qtrtd1 PE=1 SV=2 Back     alignment and function description
>sp|Q5ZM96|QTRD1_CHICK Queuine tRNA-ribosyltransferase subunit QTRTD1 OS=Gallus gallus GN=QTRTD1 PE=2 SV=1 Back     alignment and function description
>sp|Q9H974|QTRD1_HUMAN Queuine tRNA-ribosyltransferase subunit QTRTD1 OS=Homo sapiens GN=QTRTD1 PE=1 SV=1 Back     alignment and function description
>sp|Q5R998|QTRD1_PONAB Queuine tRNA-ribosyltransferase subunit QTRTD1 OS=Pongo abelii GN=QTRTD1 PE=2 SV=1 Back     alignment and function description
>sp|B3MA91|QTRD1_DROAN Queuine tRNA-ribosyltransferase subunit QTRTD1 homolog OS=Drosophila ananassae GN=GF24662 PE=3 SV=1 Back     alignment and function description
>sp|B3RNT0|QTRD1_TRIAD Queuine tRNA-ribosyltransferase subunit QTRTD1 homolog OS=Trichoplax adhaerens GN=TRIADDRAFT_53275 PE=3 SV=1 Back     alignment and function description
>sp|Q16RF5|QTRD1_AEDAE Queuine tRNA-ribosyltransferase subunit QTRTD1 homolog OS=Aedes aegypti GN=AAEL010968 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query397
225460193399 PREDICTED: queuine tRNA-ribosyltransfera 0.994 0.989 0.782 0.0
297741049436 unnamed protein product [Vitis vinifera] 0.982 0.894 0.789 0.0
449441796399 PREDICTED: queuine tRNA-ribosyltransfera 0.982 0.977 0.769 1e-180
147846822383 hypothetical protein VITISV_035707 [Viti 0.949 0.984 0.730 1e-169
359807610401 uncharacterized protein LOC100778880 [Gl 0.992 0.982 0.705 1e-167
255570897406 queuine tRNA-ribosyltransferase, putativ 0.921 0.901 0.695 1e-154
357470279389 Queuine tRNA-ribosyltransferase [Medicag 0.942 0.961 0.664 1e-150
223944881398 unknown [Zea mays] gi|414868147|tpg|DAA4 0.994 0.992 0.645 1e-141
414868146398 TPA: hypothetical protein ZEAMMB73_64929 0.994 0.992 0.643 1e-140
357145132396 PREDICTED: queuine tRNA-ribosyltransfera 0.989 0.992 0.645 1e-140
>gi|225460193|ref|XP_002277122.1| PREDICTED: queuine tRNA-ribosyltransferase subunit QTRTD1 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  658 bits (1698), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 309/395 (78%), Positives = 347/395 (87%)

Query: 1   MKFAVKALSSGKARAGVVHLGSCPSPIETPCLLLSTRKGLPIFISPDLLSSLPSPDSNLL 60
           MKFAV A S G+AR GV+ L +CP P+ETP LLLSTRKGLP+FISPDLL SLPSPDS+LL
Sbjct: 1   MKFAVTAWSKGRARVGVLQLANCPQPMETPALLLSTRKGLPVFISPDLLPSLPSPDSHLL 60

Query: 61  QFSPLHFSEGPSPKTISSIGGLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETP 120
           Q SPLHF +G S KTIS+IGGLHQM+GLHEYGFAAV RDSI CLPEC STNK GASFETP
Sbjct: 61  QMSPLHFLDGISSKTISNIGGLHQMLGLHEYGFAAVPRDSIVCLPECDSTNKIGASFETP 120

Query: 121 CGRRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIARSPAG 180
            GRRLIKPVEYMEMI+SMKP+LWATLADEVPAW + KRNK SVDRT++WLDECI  SPAG
Sbjct: 121 SGRRLIKPVEYMEMISSMKPSLWATLADEVPAWVSAKRNKASVDRTLRWLDECITLSPAG 180

Query: 181 GAVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDW 240
           GAVFG+IVGG+N+EER+RCAQEVA RNVSGYWIGGFGLGESM+ERP+LLNAV D LP + 
Sbjct: 181 GAVFGAIVGGANVEERQRCAQEVAGRNVSGYWIGGFGLGESMDERPALLNAVADILPVER 240

Query: 241 PRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQLSDQGS 300
           PR ICGL LPEEVLQGVAAG+DLFDS YIYHLT+GGFALTFPL+  ++++++ +LSD GS
Sbjct: 241 PRQICGLELPEEVLQGVAAGIDLFDSTYIYHLTLGGFALTFPLESIQRHEFDSRLSDVGS 300

Query: 301 DRTKINLRATVYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIHNTHHYL 360
           D TKINLRAT+YRKD  PIV++C CYTCQNHT+AYINHLLNVHEMLAQILLEIHNTHHYL
Sbjct: 301 DHTKINLRATIYRKDTAPIVDNCNCYTCQNHTRAYINHLLNVHEMLAQILLEIHNTHHYL 360

Query: 361 GFFRSIREAIKEGCFEQFQKKFVQSRREHLAADVV 395
           GFFRSIR AIKE  FEQF++ F+ SRREHL    V
Sbjct: 361 GFFRSIRTAIKEDNFEQFRQTFIDSRREHLNMTAV 395

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297741049|emb|CBI31361.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449441796|ref|XP_004138668.1| PREDICTED: queuine tRNA-ribosyltransferase subunit qtrtd1-like [Cucumis sativus] gi|449490166|ref|XP_004158527.1| PREDICTED: queuine tRNA-ribosyltransferase subunit qtrtd1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|147846822|emb|CAN82729.1| hypothetical protein VITISV_035707 [Vitis vinifera] Back     alignment and taxonomy information
>gi|359807610|ref|NP_001240906.1| uncharacterized protein LOC100778880 [Glycine max] gi|255634786|gb|ACU17754.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|255570897|ref|XP_002526400.1| queuine tRNA-ribosyltransferase, putative [Ricinus communis] gi|223534262|gb|EEF35976.1| queuine tRNA-ribosyltransferase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357470279|ref|XP_003605424.1| Queuine tRNA-ribosyltransferase [Medicago truncatula] gi|355506479|gb|AES87621.1| Queuine tRNA-ribosyltransferase [Medicago truncatula] Back     alignment and taxonomy information
>gi|223944881|gb|ACN26524.1| unknown [Zea mays] gi|414868147|tpg|DAA46704.1| TPA: hypothetical protein ZEAMMB73_649296 [Zea mays] Back     alignment and taxonomy information
>gi|414868146|tpg|DAA46703.1| TPA: hypothetical protein ZEAMMB73_649296 [Zea mays] Back     alignment and taxonomy information
>gi|357145132|ref|XP_003573536.1| PREDICTED: queuine tRNA-ribosyltransferase subunit QTRTD1-like [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query397
UNIPROTKB|F1NK12425 QTRTD1 "Queuine tRNA-ribosyltr 0.511 0.477 0.339 4.1e-45
UNIPROTKB|Q5ZM96425 QTRTD1 "Queuine tRNA-ribosyltr 0.511 0.477 0.339 4.1e-45
UNIPROTKB|Q6DF96415 qtrtd1 "Queuine tRNA-ribosyltr 0.503 0.481 0.358 1.1e-44
UNIPROTKB|E2R7Z6415 QTRTD1 "Uncharacterized protei 0.511 0.489 0.342 3.2e-44
UNIPROTKB|Q28DX0413 qtrtd1 "Queuine tRNA-ribosyltr 0.501 0.481 0.370 4.7e-44
UNIPROTKB|B7Q5K1394 ISCW021855 "Queuine tRNA-ribos 0.926 0.934 0.319 4e-42
UNIPROTKB|Q9H974415 QTRTD1 "Queuine tRNA-ribosyltr 0.511 0.489 0.347 8.2e-42
UNIPROTKB|J3KR78427 QTRTD1 "Queuine tRNA-ribosyltr 0.511 0.475 0.347 1.3e-41
MGI|MGI:1922194415 Qtrtd1 "queuine tRNA-ribosyltr 0.511 0.489 0.342 3.3e-41
ZFIN|ZDB-GENE-060427-4421 qtrtd1 "queuine tRNA-ribosyltr 0.501 0.472 0.328 5.1e-41
UNIPROTKB|F1NK12 QTRTD1 "Queuine tRNA-ribosyltransferase subunit QTRTD1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
 Score = 297 (109.6 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
 Identities = 72/212 (33%), Positives = 121/212 (57%)

Query:    81 GLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETPCGRRLIKPVEYMEMITSMKP 140
             G  + +G+ +       +D +   P   +TNKT  S  +  GR  +   ++M++  +++P
Sbjct:    79 GAAKFIGMPDTVLYCSLQDPVAPCPSGYNTNKT-VSLWSSSGRMEMTASKFMDIQRAIQP 137

Query:   141 NLWATLAD--EVPAWANNKRNKTSVDRTVKWLDECIA---RSPA--GGAVFGSIVGGSNI 193
             + +  +AD   +      KR K SVDR++ +LD C+    ++P   G  +FG+I GG  +
Sbjct:   138 DWFQCIADGDTISGEVTRKRAKKSVDRSLSFLDACLQLLEKTPELQGSVMFGTIEGGDVL 197

Query:   194 EERKRCAQEVAVRNVSGYWIGGF-GLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEE 252
             EER R A+E A R V G+ + GF G   + E + +L+++VT  LP+D PR+I G+G P+E
Sbjct:   198 EERLRSARETAKRPVGGFLLDGFQGRAMAKETKMNLISSVTAELPEDKPRIIHGVGKPDE 257

Query:   253 VLQGVAAGVDLFDSAYIYHLTIGGFALTFPLD 284
             VL+ +  GVD+F+S + + +T  G AL F  D
Sbjct:   258 VLECIERGVDIFESFFPFQVTERGCALVFGYD 289
GO:0008616 "queuosine biosynthetic process" evidence=IEA
GO:0005739 "mitochondrion" evidence=IEA
GO:0008479 "queuine tRNA-ribosyltransferase activity" evidence=IEA
UNIPROTKB|Q5ZM96 QTRTD1 "Queuine tRNA-ribosyltransferase subunit QTRTD1" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q6DF96 qtrtd1 "Queuine tRNA-ribosyltransferase subunit qtrtd1" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|E2R7Z6 QTRTD1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q28DX0 qtrtd1 "Queuine tRNA-ribosyltransferase subunit qtrtd1" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|B7Q5K1 ISCW021855 "Queuine tRNA-ribosyltransferase subunit QTRTD1 homolog" [Ixodes scapularis (taxid:6945)] Back     alignment and assigned GO terms
UNIPROTKB|Q9H974 QTRTD1 "Queuine tRNA-ribosyltransferase subunit QTRTD1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|J3KR78 QTRTD1 "Queuine tRNA-ribosyltransferase subunit QTRTD1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:1922194 Qtrtd1 "queuine tRNA-ribosyltransferase domain containing 1" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-060427-4 qtrtd1 "queuine tRNA-ribosyltransferase domain containing 1" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q28DX0QTRD1_XENTR2, ., 4, ., 2, ., 2, 90.34070.92440.8886yesno
B8ZXI1QTRD1_MOUSE2, ., 4, ., 2, ., 2, 90.31990.92190.8819yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.4.20.766
4th Layer2.4.2.290.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query397
pfam01702237 pfam01702, TGT, Queuine tRNA-ribosyltransferase 3e-77
COG0343372 COG0343, Tgt, Queuine/archaeosine tRNA-ribosyltran 4e-57
PRK00112366 PRK00112, tgt, queuine tRNA-ribosyltransferase; Pr 4e-55
TIGR00430368 TIGR00430, Q_tRNA_tgt, tRNA-guanine transglycosyla 1e-50
TIGR00449367 TIGR00449, tgt_general, tRNA-guanine family transg 9e-48
PRK01008372 PRK01008, PRK01008, queuine tRNA-ribosyltransferas 4e-26
TIGR00432 540 TIGR00432, arcsn_tRNA_tgt, tRNA-guanine transglyco 2e-05
PRK13534 639 PRK13534, PRK13534, 7-cyano-7-deazaguanine tRNA-ri 2e-04
PRK13533 487 PRK13533, PRK13533, 7-cyano-7-deazaguanine tRNA-ri 0.001
>gnl|CDD|216654 pfam01702, TGT, Queuine tRNA-ribosyltransferase Back     alignment and domain information 
 Score =  238 bits (609), Expect = 3e-77
 Identities = 97/256 (37%), Positives = 143/256 (55%), Gaps = 21/256 (8%)

Query: 130 EYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECI-ARSPAGGAVFGSIV 188
           E +E+  ++  ++   L +  P  A  +R + SV+RT++W D C+ A    G A+FG + 
Sbjct: 2   ESIEIQNALGSDIIMPLDECTPYPAPRERAEKSVERTLRWADRCLEAHKRKGQALFGIVQ 61

Query: 189 GGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLG 248
           GG   + R+  A+E+A     GY IGG  +GE  EE   L++AVT  LP+D PR + G+G
Sbjct: 62  GGLYEDLREESAEELAEDGFDGYAIGGLSVGEEKEEMLELVDAVTPLLPEDKPRYLMGVG 121

Query: 249 LPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQLSDQGSDRTKINLR 308
            PE++L+ VA GVD+FD          G ALTF                       INL+
Sbjct: 122 TPEDILEAVALGVDMFDCVSPTRYARNGRALTFDG--------------------TINLK 161

Query: 309 ATVYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIRE 368
              Y+ D  P+   C CYTC+ +++AY++HLL   EML   LL IHN H+YL   R IRE
Sbjct: 162 NARYKLDFRPLDPPCDCYTCRKYSRAYLHHLLKAKEMLGSRLLTIHNLHYYLRLMREIRE 221

Query: 369 AIKEGCFEQFQKKFVQ 384
           AI+EG FE++ ++F++
Sbjct: 222 AIEEGTFEEYVEEFLR 237

This is a family of queuine tRNA-ribosyltransferases EC:2.4.2.29, also known as tRNA-guanine transglycosylase and guanine insertion enzyme. Queuine tRNA-ribosyltransferase modifies tRNAs for asparagine, aspartic acid, histidine and tyrosine with queuine. It catalyzes the exchange of guanine-34 at the wobble position with 7-aminomethyl-7-deazaguanine, and the addition of a cyclopentenediol moiety to 7-aminomethyl-7-deazaguanine-34 tRNA; giving a hypermodified base queuine in the wobble position. The aligned region contains a zinc binding motif C-x-C-x2-C-x29-H, and important tRNA and 7-aminomethyl-7deazaguanine binding residues. Length = 237
>gnl|CDD|223420 COG0343, Tgt, Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|234642 PRK00112, tgt, queuine tRNA-ribosyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|129522 TIGR00430, Q_tRNA_tgt, tRNA-guanine transglycosylase, queuosine-34-forming Back     alignment and domain information
>gnl|CDD|129541 TIGR00449, tgt_general, tRNA-guanine family transglycosylase Back     alignment and domain information
>gnl|CDD|134464 PRK01008, PRK01008, queuine tRNA-ribosyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|232972 TIGR00432, arcsn_tRNA_tgt, tRNA-guanine transglycosylase, archaeosine-15-forming Back     alignment and domain information
>gnl|CDD|237418 PRK13534, PRK13534, 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|237417 PRK13533, PRK13533, 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 397
TIGR00430368 Q_tRNA_tgt tRNA-guanine transglycosylase, queuosin 100.0
PRK00112366 tgt queuine tRNA-ribosyltransferase; Provisional 100.0
COG0343372 Tgt Queuine/archaeosine tRNA-ribosyltransferase [T 100.0
TIGR00449367 tgt_general tRNA-guanine transglycosylases, variou 100.0
PRK01008372 queuine tRNA-ribosyltransferase; Provisional 100.0
KOG3908396 consensus Queuine-tRNA ribosyltransferase [RNA pro 100.0
PRK13533 487 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Pr 100.0
PRK13534 639 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Pr 100.0
KOG3909414 consensus Queuine-tRNA ribosyltransferase [RNA pro 100.0
PF01702238 TGT: Queuine tRNA-ribosyltransferase; InterPro: IP 100.0
TIGR00432 540 arcsn_tRNA_tgt tRNA-guanine transglycosylase, arch 100.0
PHA01745306 hypothetical protein 98.51
COG1549 519 Queuine tRNA-ribosyltransferases, contain PUA doma 98.26
PRK12330 499 oxaloacetate decarboxylase; Provisional 95.67
cd03174265 DRE_TIM_metallolyase DRE-TIM metallolyase superfam 95.14
COG5016 472 Pyruvate/oxaloacetate carboxyltransferase [Energy 94.75
PF00682237 HMGL-like: HMGL-like of this family is not conserv 94.24
PRK05692287 hydroxymethylglutaryl-CoA lyase; Provisional 93.97
cd07938274 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, 93.96
cd07941273 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 93.94
PLN02746347 hydroxymethylglutaryl-CoA lyase 93.05
PRK14041 467 oxaloacetate decarboxylase; Provisional 93.03
cd07939259 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and 92.92
cd07940268 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N- 92.9
CHL00200263 trpA tryptophan synthase alpha subunit; Provisiona 92.83
PRK05286344 dihydroorotate dehydrogenase 2; Reviewed 92.5
cd04738327 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) cl 92.45
PRK14042 596 pyruvate carboxylase subunit B; Provisional 92.39
cd07945280 DRE_TIM_CMS Leptospira interrogans citramalate syn 92.04
PRK09282 592 pyruvate carboxylase subunit B; Validated 91.97
cd07948262 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate s 91.86
PRK08195337 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic ac 91.66
TIGR01108 582 oadA oxaloacetate decarboxylase alpha subunit. Thi 91.63
PRK12331448 oxaloacetate decarboxylase; Provisional 91.52
cd00952309 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate 91.15
PRK14040 593 oxaloacetate decarboxylase; Provisional 91.13
PLN02417280 dihydrodipicolinate synthase 90.71
PLN02591250 tryptophan synthase 90.27
PRK07259301 dihydroorotate dehydrogenase 1B; Reviewed 90.26
cd02810289 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) 90.16
PRK12581468 oxaloacetate decarboxylase; Provisional 90.09
cd07937275 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcar 89.92
PRK03170292 dihydrodipicolinate synthase; Provisional 89.48
PRK04147293 N-acetylneuraminate lyase; Provisional 88.99
PRK12999 1146 pyruvate carboxylase; Reviewed 88.68
cd00954288 NAL N-Acetylneuraminic acid aldolase, also called 88.53
cd04740296 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c 88.47
cd00945201 Aldolase_Class_I Class I aldolases. The class I al 88.32
TIGR01036335 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 88.25
cd00950284 DHDPS Dihydrodipicolinate synthase (DHDPS) is a ke 88.22
TIGR02313294 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic ac 88.11
TIGR00674285 dapA dihydrodipicolinate synthase. Dihydrodipicoli 88.1
PLN02826409 dihydroorotate dehydrogenase 88.02
TIGR00262256 trpA tryptophan synthase, alpha subunit. Tryptopha 87.92
cd07944266 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase- 87.76
TIGR02090363 LEU1_arch isopropylmalate/citramalate/homocitrate 87.62
cd00331217 IGPS Indole-3-glycerol phosphate synthase (IGPS); 86.75
cd00408281 DHDPS-like Dihydrodipicolinate synthase family. A 86.71
TIGR03249296 KdgD 5-dehydro-4-deoxyglucarate dehydratase. 5-deh 86.63
TIGR00683290 nanA N-acetylneuraminate lyase. N-acetylneuraminat 86.31
TIGR02660365 nifV_homocitr homocitrate synthase NifV. This fami 86.05
PRK11858378 aksA trans-homoaconitate synthase; Reviewed 86.01
PF00701289 DHDPS: Dihydrodipicolinate synthetase family; Inte 85.92
TIGR01306321 GMP_reduct_2 guanosine monophosphate reductase, ba 85.9
cd02809299 alpha_hydroxyacid_oxid_FMN Family of homologous FM 85.66
cd07943263 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-te 85.53
TIGR01235 1143 pyruv_carbox pyruvate carboxylase. This enzyme pla 85.31
PRK03620303 5-dehydro-4-deoxyglucarate dehydratase; Provisiona 84.98
PF00290259 Trp_syntA: Tryptophan synthase alpha chain; InterP 83.97
TIGR03217333 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase. 83.71
cd04740296 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) c 83.37
cd04741294 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) c 83.22
cd00951289 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also 82.81
cd00953279 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolas 82.8
PLN02535364 glycolate oxidase 82.77
PRK11197381 lldD L-lactate dehydrogenase; Provisional 82.64
COG0329299 DapA Dihydrodipicolinate synthase/N-acetylneuramin 82.18
PF01070356 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR 82.11
cd03332383 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-bindin 81.52
cd02071122 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 bin 81.34
PLN02493367 probable peroxisomal (S)-2-hydroxy-acid oxidase 80.79
PLN02979366 glycolate oxidase 80.45
>TIGR00430 Q_tRNA_tgt tRNA-guanine transglycosylase, queuosine-34-forming Back     alignment and domain information 
Probab=100.00  E-value=2.3e-103  Score=780.08  Aligned_cols=361  Identities=27%  Similarity=0.528  Sum_probs=343.6

Q ss_pred             EEEEeecCCCceeEEEEcCCCCceeecCcccccccCcccCcCCHHHHhcCCCCCCceeecccchhccCCCcccccccCCc
Q 015981            3 FAVKALSSGKARAGVVHLGSCPSPIETPCLLLSTRKGLPIFISPDLLSSLPSPDSNLLQFSPLHFSEGPSPKTISSIGGL   82 (397)
Q Consensus         3 F~v~~~~~~~aR~G~l~~~~~~~~i~TP~f~~~t~~g~~~~Lt~d~l~~~~~~~~~~~~~n~~~l~~~~~~~~~~~~gGl   82 (397)
                      |+|... ++.||+|+|+|+  |++|+||+||+++++|.+++|||++|+++   ++++++.|+|||+++||.+++++.|||
T Consensus         1 f~i~~~-~~~aR~G~l~t~--hg~i~TP~fmpv~t~g~vk~lt~~~l~~~---g~~~il~Ntyhl~~rpg~~~i~~~gGl   74 (368)
T TIGR00430         1 FELQKT-DKHARVGKLNTP--HGSVETPVFMPVGTLGTVKGLTPEELEAT---GAEIILANTYHLWLRPGQKIVKELGGL   74 (368)
T ss_pred             CEEEec-cCCcceeEEEcC--CceeeCCceEecccccccCccCHHHHHHc---CCCeEeccHHHHhhCCcHHHHHHhCCH
Confidence            778432 456999999999  67999999999999999999999999998   899999999999999999999999999


Q ss_pred             ccccCCCCceeEeecCCccCCccCCCCCCCCceEEEcC-CC-ceecChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHHHH
Q 015981           83 HQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETP-CG-RRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNK  160 (397)
Q Consensus        83 h~f~~~~~~~~~~sg~~~~~~~~~~~~~~~~gv~~~s~-~G-~~~ltpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr~~  160 (397)
                      |+||+|+++++||||+||++|+++..+.+++||.|+|+ +| ++.+|||+++++|++|||||+|+|||++++..+.||++
T Consensus        75 h~f~~w~~~ilTDSGgfQv~sl~~~~~i~~~Gv~f~s~~dG~~~~ltpe~~i~~q~~igsDI~m~LD~~~~~~~~~~~~~  154 (368)
T TIGR00430        75 HKFMQWDGPILTDSGGFQVFSLSDLRKIEEEGVHFKSPIDGSKIFLTPEKSMEIQYALGSDIIMAFDECTPYPADRDYAE  154 (368)
T ss_pred             HHHhCCCCceeeccCcceEEecCccccCCCCceEeecCCCCceEEEcHHHHHHHHHHhCCCEEEECCcCCCCCCCHHHHH
Confidence            99999999999999999999999999999999999999 88 57999999999999999999999988888888999999


Q ss_pred             HHHHHHHHHHHHHHHhCCC---CCCeEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCC
Q 015981          161 TSVDRTVKWLDECIARSPA---GGAVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLP  237 (397)
Q Consensus       161 ~sverT~~w~~~~l~~~~~---~~~lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp  237 (397)
                      +||+||++|+++|++.+++   ++.+|||||||.+++||++|++++.+++++||+|||++.||+.+++.++|.++.+.||
T Consensus       155 ~av~rT~rW~~r~~~~~~~~~~~~~lfgiVqGg~~~dLR~~sa~~l~~~~~~G~aIGGl~~ge~~~~~~~iv~~~~~~lp  234 (368)
T TIGR00430       155 KSTERTLRWAERCLEAHDRRGNKQALFGIVQGGTYEDLRSQSAEGLIELDFPGYAIGGLSVGEPKEDMLRILEHTAPLLP  234 (368)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCCeeEEEEeCCCCCHHHHHHHHHHHHHCCCCeeEeCCccCCCCHHHHHHHHHHHHhhCC
Confidence            9999999999999986543   2459999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccCCCChHHHHHHHHcCCcEEecchhHHhhhcceeecccCCccccccccccccCCCCCcceeeecCcccccCCC
Q 015981          238 KDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQLSDQGSDRTKINLRATVYRKDAT  317 (397)
Q Consensus       238 ~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~~a~~G~al~f~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~D~~  317 (397)
                      ++||||+||+|+|.+|+.+|++|||+|||++|++.|++|.||++                    .+.+||++.+|+.|++
T Consensus       235 ~~kPryl~Gvg~P~~i~~~v~~GvD~FD~~~ptr~Ar~G~alt~--------------------~g~i~l~~~~~~~D~~  294 (368)
T TIGR00430       235 KDKPRYLMGVGTPEDLLNAIRRGIDMFDCVMPTRNARNGTLFVT--------------------EGRINIKNAKYKDDTR  294 (368)
T ss_pred             cccceeecCCCCHHHHHHHHHcCCCEEEecCcccccCCCceECC--------------------CCcEeCCchhhhccCC
Confidence            99999999999999999999999999999999999999999984                    4789999999999999


Q ss_pred             CCCCCCCCcccccccHHHHHHHhhcChhhHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Q 015981          318 PIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIREAIKEGCFEQFQKKFVQSRREH  389 (397)
Q Consensus       318 pl~~~C~C~tC~~~traYlhHLl~~~Eml~~~LL~~HNl~~~~~~~~~iR~aI~~g~l~~~~~~f~~~~~~~  389 (397)
                      ||+++|+||+|++|||||||||++++||++++||++||+++|.+||++||++|++|+|++|+++|++++.+.
T Consensus       295 Pi~~~C~C~tC~~~traYLhHL~~~~E~l~~~LLt~HNl~~~~~l~~~iR~aI~~g~~~e~~~~~~~~~~~~  366 (368)
T TIGR00430       295 PLDEECDCYTCKNYSRAYLRHLIRCNELLGARLATLHNLHFYLRLMEKIRQAILEDRFLSFRTEFLERYGEE  366 (368)
T ss_pred             CCCCCCCCccccccCHHHHHhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhccc
Confidence            999999999999999999999999999999999999999999999999999999999999999999988654

This tRNA-guanine transglycosylase (tgt) catalyzes an exchange for the guanine base at position 34 of many tRNAs; this nucleotide is subsequently modified to queuosine. The Archaea have a closely related enzyme that catalyzes a base exchange for guanine at position 15 in some tRNAs, a site that is subsequently converted to the archaeal-specific modified base archaeosine (7-formamidino-7-deazaguanosine), while Archaeoglobus fulgidus has both enzymes.
>PRK00112 tgt queuine tRNA-ribosyltransferase; Provisional Back     alignment and domain information
>COG0343 Tgt Queuine/archaeosine tRNA-ribosyltransferase [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00449 tgt_general tRNA-guanine transglycosylases, various specificities Back     alignment and domain information
>PRK01008 queuine tRNA-ribosyltransferase; Provisional Back     alignment and domain information
>KOG3908 consensus Queuine-tRNA ribosyltransferase [RNA processing and modification] Back     alignment and domain information
>PRK13533 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional Back     alignment and domain information
>PRK13534 7-cyano-7-deazaguanine tRNA-ribosyltransferase; Provisional Back     alignment and domain information
>KOG3909 consensus Queuine-tRNA ribosyltransferase [RNA processing and modification] Back     alignment and domain information
>PF01702 TGT: Queuine tRNA-ribosyltransferase; InterPro: IPR002616 This is a family of queuine, archaeosine and general tRNA-ribosyltransferases 2 Back     alignment and domain information
>TIGR00432 arcsn_tRNA_tgt tRNA-guanine transglycosylase, archaeosine-15-forming Back     alignment and domain information
>PHA01745 hypothetical protein Back     alignment and domain information
>COG1549 Queuine tRNA-ribosyltransferases, contain PUA domain [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK12330 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily Back     alignment and domain information
>COG5016 Pyruvate/oxaloacetate carboxyltransferase [Energy production and conversion] Back     alignment and domain information
>PF00682 HMGL-like: HMGL-like of this family is not conserved in other members Back     alignment and domain information
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional Back     alignment and domain information
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain Back     alignment and domain information
>cd07941 DRE_TIM_LeuA3 Desulfobacterium autotrophicum LeuA3 and related proteins, N-terminal catalytic TIM barrel domain Back     alignment and domain information
>PLN02746 hydroxymethylglutaryl-CoA lyase Back     alignment and domain information
>PRK14041 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain Back     alignment and domain information
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain Back     alignment and domain information
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional Back     alignment and domain information
>PRK05286 dihydroorotate dehydrogenase 2; Reviewed Back     alignment and domain information
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2 Back     alignment and domain information
>PRK14042 pyruvate carboxylase subunit B; Provisional Back     alignment and domain information
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain Back     alignment and domain information
>PRK09282 pyruvate carboxylase subunit B; Validated Back     alignment and domain information
>cd07948 DRE_TIM_HCS Saccharomyces cerevisiae homocitrate synthase and related proteins, catalytic TIM barrel domain Back     alignment and domain information
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated Back     alignment and domain information
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit Back     alignment and domain information
>PRK12331 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>cd00952 CHBPH_aldolase Trans-o-hydroxybenzylidenepyruvate hydratase-aldolase (HBPHA) and trans-2'-carboxybenzalpyruvate hydratase-aldolase (CBPHA) Back     alignment and domain information
>PRK14040 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>PLN02417 dihydrodipicolinate synthase Back     alignment and domain information
>PLN02591 tryptophan synthase Back     alignment and domain information
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed Back     alignment and domain information
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain Back     alignment and domain information
>PRK12581 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain Back     alignment and domain information
>PRK03170 dihydrodipicolinate synthase; Provisional Back     alignment and domain information
>PRK04147 N-acetylneuraminate lyase; Provisional Back     alignment and domain information
>PRK12999 pyruvate carboxylase; Reviewed Back     alignment and domain information
>cd00954 NAL N-Acetylneuraminic acid aldolase, also called N-acetylneuraminate lyase (NAL), which catalyses the reversible aldol reaction of N-acetyl-D-mannosamine and pyruvate to give N-acetyl-D-neuraminic acid (D-sialic acid) Back     alignment and domain information
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain Back     alignment and domain information
>cd00945 Aldolase_Class_I Class I aldolases Back     alignment and domain information
>TIGR01036 pyrD_sub2 dihydroorotate dehydrogenase, subfamily 2 Back     alignment and domain information
>cd00950 DHDPS Dihydrodipicolinate synthase (DHDPS) is a key enzyme in lysine biosynthesis Back     alignment and domain information
>TIGR02313 HpaI-NOT-DapA 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase Back     alignment and domain information
>TIGR00674 dapA dihydrodipicolinate synthase Back     alignment and domain information
>PLN02826 dihydroorotate dehydrogenase Back     alignment and domain information
>TIGR00262 trpA tryptophan synthase, alpha subunit Back     alignment and domain information
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain Back     alignment and domain information
>TIGR02090 LEU1_arch isopropylmalate/citramalate/homocitrate synthases Back     alignment and domain information
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water Back     alignment and domain information
>cd00408 DHDPS-like Dihydrodipicolinate synthase family Back     alignment and domain information
>TIGR03249 KdgD 5-dehydro-4-deoxyglucarate dehydratase Back     alignment and domain information
>TIGR00683 nanA N-acetylneuraminate lyase Back     alignment and domain information
>TIGR02660 nifV_homocitr homocitrate synthase NifV Back     alignment and domain information
>PRK11858 aksA trans-homoaconitate synthase; Reviewed Back     alignment and domain information
>PF00701 DHDPS: Dihydrodipicolinate synthetase family; InterPro: IPR002220 Dihydropicolinate synthase (DHDPS) is the key enzyme in lysine biosynthesis via the diaminopimelate pathway of prokaryotes, some phycomycetes and higher plants Back     alignment and domain information
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial Back     alignment and domain information
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes Back     alignment and domain information
>cd07943 DRE_TIM_HOA 4-hydroxy-2-oxovalerate aldolase, N-terminal catalytic TIM barrel domain Back     alignment and domain information
>TIGR01235 pyruv_carbox pyruvate carboxylase Back     alignment and domain information
>PRK03620 5-dehydro-4-deoxyglucarate dehydratase; Provisional Back     alignment and domain information
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4 Back     alignment and domain information
>TIGR03217 4OH_2_O_val_ald 4-hydroxy-2-oxovalerate aldolase Back     alignment and domain information
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain Back     alignment and domain information
>cd04741 DHOD_1A_like Dihydroorotate dehydrogenase (DHOD) class 1A FMN-binding domain Back     alignment and domain information
>cd00951 KDGDH 5-dehydro-4-deoxyglucarate dehydratase, also called 5-keto-4-deoxy-glucarate dehydratase (KDGDH), which is member of dihydrodipicolinate synthase (DHDPS) family that comprises several pyruvate-dependent class I aldolases Back     alignment and domain information
>cd00953 KDG_aldolase KDG (2-keto-3-deoxygluconate) aldolases found in archaea Back     alignment and domain information
>PLN02535 glycolate oxidase Back     alignment and domain information
>PRK11197 lldD L-lactate dehydrogenase; Provisional Back     alignment and domain information
>COG0329 DapA Dihydrodipicolinate synthase/N-acetylneuraminate lyase [Amino acid transport and metabolism / Cell envelope biogenesis, outer membrane] Back     alignment and domain information
>PF01070 FMN_dh: FMN-dependent dehydrogenase; InterPro: IPR000262 A number of oxidoreductases that act on alpha-hydroxy acids and which are FMN-containing flavoproteins have been shown [, , ] to be structurally related Back     alignment and domain information
>cd03332 LMO_FMN L-Lactate 2-monooxygenase (LMO) FMN-binding domain Back     alignment and domain information
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain Back     alignment and domain information
>PLN02493 probable peroxisomal (S)-2-hydroxy-acid oxidase Back     alignment and domain information
>PLN02979 glycolate oxidase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query397
2ash_A381 Crystal Structure Of Queuine Trna-Ribosyltransferas 3e-33
3uvi_A388 Trna-Guanine Transglycosylase C158s C281s W326e E33 2e-29
1wkd_A386 Trna-Guanine Transglycosylase Length = 386 8e-29
1wke_A386 Trna-Guanine Transglycosylase Length = 386 8e-29
4gd0_A386 Trna-Guanine Transglycosylase Y106f, C158v Mutant L 2e-28
1efz_A386 Mutagenesis And Crystallographic Studies Of Zymomon 2e-28
1y5v_A385 Trna-guanine Transglycosylase (tgt) In Complex With 3e-28
1enu_A386 A New Target For Shigellosis: Rational Design And C 3e-28
3hfy_A386 Mutant Of Trna-Guanine Transglycosylase (K52m) Leng 3e-28
1ozm_A386 Y106f Mutant Of Z. Mobilis Tgt Length = 386 4e-28
1wkf_A386 Trna-Guanine Transglycosylase Length = 386 4e-28
4gcx_A386 Trna-Guanine Transglycosylase Y106f, C158v, V233g M 6e-28
4hqv_A385 Trna-Guanine Transglycosylase Y106f, C158v, V233g M 6e-28
3unt_A388 Trna-Guanine Transglycosylase E339q Mutant Length = 6e-28
2nso_A386 Trna-Gunanine-Transglycosylase (Tgt) Mutant Y106f, 6e-28
2oko_A385 Z. Mobilis Trna Guanine Transglycosylase E235q Muta 7e-28
2nqz_A385 Trna-Guanine Transglycosylase (Tgt) Mutant In Compl 8e-28
2pot_A386 Trna Guanine Transglycosylase (Tgt) E235q Mutant In 8e-28
3bl3_A386 Trna Guanine Transglycosylase V233g Mutant Apo Stru 1e-27
1pxg_A382 Crystal Structure Of The Mutated Trna-Guanine Trans 1e-27
4hsh_A385 Trna-Guanine Transglycosylase Y106f, V233g Mutant I 1e-27
>pdb|2ASH|A Chain A, Crystal Structure Of Queuine Trna-Ribosyltransferase (Ec 2.4.2.29) (Trna-Guanine (Tm1561) From Thermotoga Maritima At 1.90 A Resolution Length = 381 Back     alignment and structure 
Iteration: 1

 Score =  139 bits (350), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 106/390 (27%), Positives = 170/390 (43%), Gaps = 36/390 (9%)
Query: 1   MKFAVKALSSGKARAGV--VHLGSCPSPIETPCLLLSTRKGLPIFIXXXXXXXXXXXXXX 58
           M+F VK  + GKAR GV  +H G+  +P+  P        G    +              
Sbjct: 13  MEFEVKK-TFGKARLGVMKLHHGAVETPVFMPV-------GTNASVKLLTPRDLEEAGAE 64
Query: 59  XXQFSPLHFSEGPSPKTISSIGGLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFE 118
               +  H    P  + I    GLH  +G             +  LP+    +  G  F 
Sbjct: 65  IILSNTFHLMLKPGVEIIKLHRGLHNFMGWKRPILTDSGGFQVFSLPKI-RIDDEGVVFR 123
Query: 119 TPC--GRRLIKPVEYMEMITSMKPNLWATLADEVPA-WANNKRNKTSVDRTVKW-LDECI 174
           +P    +  + P   ME+  ++  ++     D  P   A+ +  K + +RT +W L    
Sbjct: 124 SPIDGSKVFLNPEISMEVQIALGSDICMVF-DHCPVPDADYEEVKEATERTYRWALRSKK 182
Query: 175 ARSPAGGAVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTD 234
           A      A+FG + GG   + R+  A ++      GY IGG  +GE       +     +
Sbjct: 183 AFKTENQALFGIVQGGIYPDLRRESALQLTSIGFDGYAIGGLSIGEERSLTLEMTEVTVE 242
Query: 235 NLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQ 294
            LP+D PR   G G PE +L+ V  GVD+FDS +   +   G ALT+             
Sbjct: 243 FLPEDKPRYFMGGGSPELILELVDRGVDMFDSVFPTRIARHGTALTW------------- 289
Query: 295 LSDQGSDRTKINLRATVYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIH 354
                    K+NL+A+  ++   P+ E C CYTC+N T++YI+HL +  E+L QILL IH
Sbjct: 290 -------NGKLNLKASYNKRSLEPVDERCGCYTCKNFTRSYIHHLFDRGEVLGQILLTIH 342
Query: 355 NTHHYLGFFRSIREAIKEGCFEQFQKKFVQ 384
           N +  +   + +R +I+ G F++ + K V+
Sbjct: 343 NINFMISLMKEVRRSIESGTFKELKSKVVE 372
>pdb|3UVI|A Chain A, Trna-Guanine Transglycosylase C158s C281s W326e E339q Mutant Length = 388 Back     alignment and structure
>pdb|1WKD|A Chain A, Trna-Guanine Transglycosylase Length = 386 Back     alignment and structure
>pdb|1WKE|A Chain A, Trna-Guanine Transglycosylase Length = 386 Back     alignment and structure
>pdb|4GD0|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v Mutant Length = 386 Back     alignment and structure
>pdb|1EFZ|A Chain A, Mutagenesis And Crystallographic Studies Of Zymomonas Mobilis Trna- Guanine Transglycosylase To Elucidate The Role Of Serine 103 For Enzymatic Activity Length = 386 Back     alignment and structure
>pdb|1Y5V|A Chain A, Trna-guanine Transglycosylase (tgt) In Complex With 6-amino-4-(2- Phenylethyl)-1,7-dihydro-8h-imidazo[4, 5-g]quinazolin-8-one Length = 385 Back     alignment and structure
>pdb|1ENU|A Chain A, A New Target For Shigellosis: Rational Design And Crystallographic Studies Of Inhibitors Of Trna-Guanine Transglycosylase Length = 386 Back     alignment and structure
>pdb|3HFY|A Chain A, Mutant Of Trna-Guanine Transglycosylase (K52m) Length = 386 Back     alignment and structure
>pdb|1OZM|A Chain A, Y106f Mutant Of Z. Mobilis Tgt Length = 386 Back     alignment and structure
>pdb|1WKF|A Chain A, Trna-Guanine Transglycosylase Length = 386 Back     alignment and structure
>pdb|4GCX|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v, V233g Mutant In Complex With Preq1 Length = 386 Back     alignment and structure
>pdb|4HQV|A Chain A, Trna-Guanine Transglycosylase Y106f, C158v, V233g Mutant In Complex With Queuine Length = 385 Back     alignment and structure
>pdb|3UNT|A Chain A, Trna-Guanine Transglycosylase E339q Mutant Length = 388 Back     alignment and structure
>pdb|2NSO|A Chain A, Trna-Gunanine-Transglycosylase (Tgt) Mutant Y106f, C158v, A232s, V233g- Apo-Structure Length = 386 Back     alignment and structure
>pdb|2OKO|A Chain A, Z. Mobilis Trna Guanine Transglycosylase E235q Mutant Apo-Structure At Ph 5.5 Length = 385 Back     alignment and structure
>pdb|2NQZ|A Chain A, Trna-Guanine Transglycosylase (Tgt) Mutant In Complex With 7-Deaza-7- Aminomethyl-Guanine Length = 385 Back     alignment and structure
>pdb|2POT|A Chain A, Trna Guanine Transglycosylase (Tgt) E235q Mutant In Complex With Guanine Length = 386 Back     alignment and structure
>pdb|3BL3|A Chain A, Trna Guanine Transglycosylase V233g Mutant Apo Structure Length = 386 Back     alignment and structure
>pdb|1PXG|A Chain A, Crystal Structure Of The Mutated Trna-Guanine Transglycosylase (Tgt) D280e Complexed With Preq1 Length = 382 Back     alignment and structure
>pdb|4HSH|A Chain A, Trna-Guanine Transglycosylase Y106f, V233g Mutant In Complex With Queuine Length = 385 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query397
2ash_A381 Queuine tRNA-ribosyltransferase; TM1561, tRNA-guan 8e-56
3bld_A386 Queuine tRNA-ribosyltransferase; TGT, PREQ1, glyco 4e-54
1iq8_A 582 Archaeosine tRNA-guanine transglycosylase; (alpha/ 8e-43
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-05
>2ash_A Queuine tRNA-ribosyltransferase; TM1561, tRNA-guanine, struc genomics, joint center for structural genomics, JCSG; 1.90A {Thermotoga maritima} Length = 381 Back     alignment and structure
 Score =  186 bits (476), Expect = 8e-56
 Identities = 77/250 (30%), Positives = 116/250 (46%), Gaps = 36/250 (14%)

Query: 148 DEVPAW-ANNKRNKTSVDRTVKWLDECI-ARSPAGGAVFGSIVGGSNIEE-RKRCAQEVA 204
           D  P   A+ +  K + +RT +W      A      A+FG IV G    + R+  A ++ 
Sbjct: 154 DHCPVPDADYEEVKEATERTYRWALRSKKAFKTENQALFG-IVQGGIYPDLRRESALQLT 212

Query: 205 VRNVSGYWIGGFGLGESMEERPSLLNAVTDNLPKDWPRMICGLGLPEEVLQGVAAGVDLF 264
                GY IGG  +GE       +     + LP+D PR   G G PE +L+ V  GVD+F
Sbjct: 213 SIGFDGYAIGGLSIGEERSLTLEMTEVTVEFLPEDKPRYFMGGGSPELILELVDRGVDMF 272

Query: 265 D------SAYIYHLTIGGFALTFPLDRTEKNDYNYQLSDQGSDRTKINLRATVYRKDATP 318
           D       A        G ALT                  G    K+NL+A+  ++   P
Sbjct: 273 DSVFPTRIAR------HGTALT----------------WNG----KLNLKASYNKRSLEP 306

Query: 319 IVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIREAIKEGCFEQF 378
           + E C CYTC+N T++YI+HL +  E+L QILL IHN +  +   + +R +I+ G F++ 
Sbjct: 307 VDERCGCYTCKNFTRSYIHHLFDRGEVLGQILLTIHNINFMISLMKEVRRSIESGTFKEL 366

Query: 379 QKKFVQSRRE 388
           + K V+    
Sbjct: 367 KSKVVEVYSS 376
>3bld_A Queuine tRNA-ribosyltransferase; TGT, PREQ1, glycosyltransferase, metal-binding, queuosine biosynthesis, tRNA processing; HET: PRF; 1.19A {Zymomonas mobilis} PDB: 3bl3_A* 1ozq_A* 1ozm_A* 1r5y_A* 1enu_A* 1f3e_A* 1k4h_A* 1n2v_A* 1p0b_A* 1p0d_A 1p0e_A* 1pud_A 1q2r_A* 1q2s_A* 1q4w_A* 1q63_A* 1q65_A* 1q66_A* 1k4g_A* 1s38_A* ... Length = 386 Back     alignment and structure
>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1 d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A Length = 582 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query397
2ash_A381 Queuine tRNA-ribosyltransferase; TM1561, tRNA-guan 100.0
3bld_A386 Queuine tRNA-ribosyltransferase; TGT, PREQ1, glyco 100.0
1iq8_A 582 Archaeosine tRNA-guanine transglycosylase; (alpha/ 100.0
2ftp_A302 Hydroxymethylglutaryl-COA lyase; structural genomi 95.04
3ble_A337 Citramalate synthase from leptospira interrogans; 93.45
3ewb_X293 2-isopropylmalate synthase; LEUA, structural genom 93.38
1ydo_A307 HMG-COA lyase; TIM-barrel protein, structural geno 93.35
2cw6_A298 Hydroxymethylglutaryl-COA lyase, mitochondrial; HM 93.04
1rqb_A 539 Transcarboxylase 5S subunit; TIM-barrel, carbamyla 92.35
1nvm_A345 HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered 92.33
3zwt_A367 Dihydroorotate dehydrogenase (quinone), mitochond; 92.26
1ydn_A295 Hydroxymethylglutaryl-COA lyase; TIM-barrel protei 92.03
2nx9_A 464 Oxaloacetate decarboxylase 2, subunit alpha; carbo 91.59
1jub_A311 Dihydroorotate dehydrogenase A; homodimer, alpha-b 91.22
1f76_A336 Dihydroorotate dehydrogenase; monomer, alpha-beta- 91.02
3oix_A345 Putative dihydroorotate dehydrogenase; dihydrooro 90.66
3rmj_A370 2-isopropylmalate synthase; LEUA, truncation, neis 90.42
3eeg_A325 2-isopropylmalate synthase; 11106D, beta barrel, P 89.51
3bg3_A 718 Pyruvate carboxylase, mitochondrial; TIM barrel, A 88.66
3s5o_A307 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; 88.46
3i65_A415 Dihydroorotate dehydrogenase homolog, mitochondria 88.27
1xky_A301 Dihydrodipicolinate synthase; TIM barrel, , lysine 88.26
3tak_A291 DHDPS, dihydrodipicolinate synthase; TIM barrel, l 87.75
3cpr_A304 Dihydrodipicolinate synthetase; (beta/alpha)8-barr 87.68
2nuw_A288 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho a 87.45
3b4u_A294 Dihydrodipicolinate synthase; structural genomics, 87.42
2wkj_A303 N-acetylneuraminate lyase; directed evolution, sia 87.24
3flu_A297 DHDPS, dihydrodipicolinate synthase; TIM barrel, b 87.08
3l21_A304 DHDPS, dihydrodipicolinate synthase; DAPA, dimer, 87.07
3si9_A315 DHDPS, dihydrodipicolinate synthase; structural ge 86.81
3a5f_A291 Dihydrodipicolinate synthase; TIM barrel, enzyme, 86.51
3fkr_A309 L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL f 86.35
2ehh_A294 DHDPS, dihydrodipicolinate synthase; structural ge 86.3
1w3i_A293 EDA, 2-keto-3-deoxy gluconate aldolase; archaeal m 85.92
3dz1_A313 Dihydrodipicolinate synthase; lysine biosynthesis, 85.77
1f6k_A293 N-acetylneuraminate lyase; beta barrel; 1.60A {Hae 85.66
2r91_A286 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM 85.63
2yxg_A289 DHDPS, dihydrodipicolinate synthase; MJ0244, TIM b 85.48
3qze_A314 DHDPS, dihydrodipicolinate synthase; alpha beta ba 85.43
4dpp_A360 DHDPS 2, dihydrodipicolinate synthase 2, chloropla 85.31
3m5v_A301 DHDPS, dihydrodipicolinate synthase; TIM barrel, c 85.18
2r8w_A332 AGR_C_1641P; APC7498, dihydrodipicolinate synthase 85.13
3na8_A315 Putative dihydrodipicolinate synthetase; lyase; HE 85.09
2v9d_A343 YAGE; dihydrodipicolinic acid synthase, N-acetyl n 85.04
2rfg_A297 Dihydrodipicolinate synthase; beta barrel, amino-a 84.79
1p0k_A349 Isopentenyl-diphosphate delta-isomerase; terpene b 84.68
2vc6_A292 MOSA, dihydrodipicolinate synthase; DHDPS, TIM bar 84.64
4ef8_A354 Dihydroorotate dehydrogenase; phenyl isothiocyanat 84.31
1o5k_A306 DHDPS, dihydrodipicolinate synthase; TM1521, struc 84.2
2ojp_A292 DHDPS, dihydrodipicolinate synthase; dimer, lysine 84.17
2ztj_A382 Homocitrate synthase; (beta/alpha)8 TIM barrel, su 83.45
3qfe_A318 Putative dihydrodipicolinate synthase family PROT; 81.87
2e6f_A314 Dihydroorotate dehydrogenase; chagas disease, pyri 81.63
1tv5_A443 Dhodehase, dihydroorotate dehydrogenase homolog, m 81.34
3tha_A252 Tryptophan synthase alpha chain; structural genomi 80.4
3h5d_A311 DHDPS, dihydrodipicolinate synthase; lysine biosyn 80.33
3e96_A316 Dihydrodipicolinate synthase; structural genomics, 80.13
>2ash_A Queuine tRNA-ribosyltransferase; TM1561, tRNA-guanine, struc genomics, joint center for structural genomics, JCSG; 1.90A {Thermotoga maritima} Back     alignment and structure
Probab=100.00  E-value=5.7e-108  Score=809.80  Aligned_cols=361  Identities=29%  Similarity=0.502  Sum_probs=343.9

Q ss_pred             CeEEEEeecCCCceeEEEEcCCCCceeecCcccccccCcccCcCCHHHHhcCCCCCCceeecccchhccCCCcccccccC
Q 015981            1 MKFAVKALSSGKARAGVVHLGSCPSPIETPCLLLSTRKGLPIFISPDLLSSLPSPDSNLLQFSPLHFSEGPSPKTISSIG   80 (397)
Q Consensus         1 m~F~v~~~~~~~aR~G~l~~~~~~~~i~TP~f~~~t~~g~~~~Lt~d~l~~~~~~~~~~~~~n~~~l~~~~~~~~~~~~g   80 (397)
                      |.|+|+.. ++.||+|+|+|+  |++|+||+||++++.|.+++|||++|+++   ++++++.|+|||+++||.+++++.|
T Consensus        13 ~~~~~~~~-~~~aR~G~l~t~--hg~i~TP~fmPVgt~gtvk~lt~~~l~~~---g~~iiL~NtyhL~lrPg~~~i~~~G   86 (381)
T 2ash_A           13 MEFEVKKT-FGKARLGVMKLH--HGAVETPVFMPVGTNASVKLLTPRDLEEA---GAEIILSNTFHLMLKPGVEIIKLHR   86 (381)
T ss_dssp             CEEEEEEE-ETTEEEEEEEET--TEEEEESEEEEEESSSSCTTCCHHHHHHH---TCSCEEECCHHHHHTTCHHHHHHTT
T ss_pred             eeEEEEcC-CCceeeEEEEEC--CeeEECCeEEEeecCCcCCcCCHHHHHHc---CCCEEehhHHHHhhCCcHHHHHHcc
Confidence            78999653 467999999999  78999999999999999999999999998   8999999999999999999999999


Q ss_pred             CcccccCCCCceeEeecCCccCCccCCCCCCCCceEEEcC-CC-ceecChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHH
Q 015981           81 GLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETP-CG-RRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKR  158 (397)
Q Consensus        81 Glh~f~~~~~~~~~~sg~~~~~~~~~~~~~~~~gv~~~s~-~G-~~~ltpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr  158 (397)
                      |||+||+|+++++||||+||++|+.+.+ .+++||.|+|+ +| ++.+|||++|++|+.|||||+|+||+++++..++++
T Consensus        87 GLh~Fm~w~~~ilTDSGgfQv~sl~~~~-i~e~Gv~F~s~~dG~~~~ltpe~~~~iQ~~lgsDI~m~lDe~~~~~~~~~~  165 (381)
T 2ash_A           87 GLHNFMGWKRPILTDSGGFQVFSLPKIR-IDDEGVVFRSPIDGSKVFLNPEISMEVQIALGSDICMVFDHCPVPDADYEE  165 (381)
T ss_dssp             SHHHHHTCCSCEEECCCHHHHHTSTTCE-ECSSCEEEECTTTCCEEEECHHHHHHHHHHHTCSEEECCCCCCC--CCHHH
T ss_pred             ChHhhccCCCCeeecccccccccccccc-cCCCCceEecCcCCceeecCHHHHHHHHHHhCCCEEEECCcCCCCCCCHHH
Confidence            9999999999999999999999998877 89999999999 78 679999999999999999999999888888899999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCC-CCCeEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHHHcCCC
Q 015981          159 NKTSVDRTVKWLDECIARSPA-GGAVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAVTDNLP  237 (397)
Q Consensus       159 ~~~sverT~~w~~~~l~~~~~-~~~lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~~~~Lp  237 (397)
                      +++||+||++|+++|++.+.+ .+.+|||||||.++|||++|++++.+++++||+|||+++||+.+++.++|+.+.+.||
T Consensus       166 ~~~sv~rT~rWa~r~~~~~~~~~~~lfgiVQGg~~~dLR~~sa~~l~~~~~~GyaIGGlsvGe~~~~~~~~l~~~~~~LP  245 (381)
T 2ash_A          166 VKEATERTYRWALRSKKAFKTENQALFGIVQGGIYPDLRRESALQLTSIGFDGYAIGGLSIGEERSLTLEMTEVTVEFLP  245 (381)
T ss_dssp             HHHHHHHHHHHHHHHHHHCCCSSCEEEEEECCTTCHHHHHHHHHHHHTTCCSEEEECSCSSSSCHHHHHHHHHHHHTTSC
T ss_pred             HHHHHHHHHHHHHHHHHHhhCCCCcEEEEEcCCCCHHHHHHHHHHHHhcCCceEEecCcccCCCHHHHHHHHHHHHhhCC
Confidence            999999999999999997754 3559999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcccccCCCChHHHHHHHHcCCcEEecchhHHhhhcceeecccCCccccccccccccCCCCCcceeeecCcccccCCC
Q 015981          238 KDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQLSDQGSDRTKINLRATVYRKDAT  317 (397)
Q Consensus       238 ~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~~a~~G~al~f~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~D~~  317 (397)
                      ++||||+||+|+|.+|+.+|++|||+|||++|++.||+|.|||.                    .+++||++.+|+.|++
T Consensus       246 ~~kPRyLmGvG~P~~il~~V~~GvDmFDcv~Ptr~Ar~G~~lt~--------------------~G~i~l~~~~y~~D~~  305 (381)
T 2ash_A          246 EDKPRYFMGGGSPELILELVDRGVDMFDSVFPTRIARHGTALTW--------------------NGKLNLKASYNKRSLE  305 (381)
T ss_dssp             TTSCEEECSCCCHHHHHHHHTTTCCEEEESHHHHHHHTTEEEET--------------------TEEEETTSGGGTTCCS
T ss_pred             CCCcEEEcCCCCHHHHHHHHHcCCCEEeCChhhhhhcCceEecc--------------------CCceEecchhhccCCC
Confidence            99999999999999999999999999999999999999999983                    5899999999999999


Q ss_pred             CCCCCCCCcccccccHHHHHHHhhcChhhHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Q 015981          318 PIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIREAIKEGCFEQFQKKFVQSRRE  388 (397)
Q Consensus       318 pl~~~C~C~tC~~~traYlhHLl~~~Eml~~~LL~~HNl~~~~~~~~~iR~aI~~g~l~~~~~~f~~~~~~  388 (397)
                      ||+++|+||||++|||||||||++++|||+++||++||||+|.+||++||+||++|+|++|+++|+++++.
T Consensus       306 Pld~~C~C~tC~~ysRAYLhHL~~~~E~l~~~LltiHNl~~~~~l~~~iR~aI~~g~f~e~~~~f~~~~~~  376 (381)
T 2ash_A          306 PVDERCGCYTCKNFTRSYIHHLFDRGEVLGQILLTIHNINFMISLMKEVRRSIESGTFKELKSKVVEVYSS  376 (381)
T ss_dssp             CSCTTCCSHHHHHCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHTC-
T ss_pred             CCCCCCCCccCcccCHHHHHhhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999988764
>3bld_A Queuine tRNA-ribosyltransferase; TGT, PREQ1, glycosyltransferase, metal-binding, queuosine biosynthesis, tRNA processing; HET: PRF; 1.19A {Zymomonas mobilis} PDB: 3bl3_A* 1ozq_A* 1ozm_A* 1r5y_A* 1enu_A* 1f3e_A* 1k4h_A* 1n2v_A* 1p0b_A* 1p0d_A 1p0e_A* 1pud_A 1q2r_A* 1q2s_A* 1q4w_A* 1q63_A* 1q65_A* 1q66_A* 1k4g_A* 1s38_A* ... Back     alignment and structure
>1iq8_A Archaeosine tRNA-guanine transglycosylase; (alpha/beta)8 barrel, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii} SCOP: b.122.1.1 c.1.20.1 d.17.6.1 PDB: 1it7_A* 1it8_A* 1j2b_A Back     alignment and structure
>2ftp_A Hydroxymethylglutaryl-COA lyase; structural genomics, PSI, protein structure initiativ midwest center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa} Back     alignment and structure
>3ble_A Citramalate synthase from leptospira interrogans; TIM barrel, licmsn, substrate specificity, acyltransferase, amino-acid biosynthesis; 2.00A {Leptospira interrogans} PDB: 3blf_A 3bli_A* Back     alignment and structure
>3ewb_X 2-isopropylmalate synthase; LEUA, structural genomics, unknown function, amino-acid biosynthesis; 2.10A {Listeria monocytogenes str} Back     alignment and structure
>1ydo_A HMG-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG,; 2.71A {Bacillus subtilis subsp} Back     alignment and structure
>2cw6_A Hydroxymethylglutaryl-COA lyase, mitochondrial; HMG-COA lyase, ketogenic enzyme; HET: 3HG; 2.10A {Homo sapiens} PDB: 3mp3_A* 3mp4_A 3mp5_A* Back     alignment and structure
>1rqb_A Transcarboxylase 5S subunit; TIM-barrel, carbamylated lysine, transfera; HET: KCX; 1.90A {Propionibacterium freudenreichii subspshermanii} SCOP: a.5.7.2 c.1.10.5 PDB: 1rqe_A 1rqh_A* 1rr2_A* 1u5j_A* 1s3h_A* Back     alignment and structure
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5 Back     alignment and structure
>3zwt_A Dihydroorotate dehydrogenase (quinone), mitochond; oxidoreductase; HET: FMN ORO KFZ; 1.55A {Homo sapiens} PDB: 1d3h_A* 2bxv_A* 2prh_A* 2prl_A* 2prm_A* 3f1q_A* 3fj6_A* 3fjl_A* 3g0u_A* 3g0x_A* 3zws_A* 1d3g_A* 3u2o_A* 2fpv_A* 2fpt_A* 2fpy_A* 2fqi_A* 3kvl_A* 3kvk_A* 3kvj_A* ... Back     alignment and structure
>1ydn_A Hydroxymethylglutaryl-COA lyase; TIM-barrel protein, structural genomics, PSI, protein struct initiative; 2.30A {Brucella melitensis} Back     alignment and structure
>2nx9_A Oxaloacetate decarboxylase 2, subunit alpha; carboxyltransferase structure, B enzymes, Zn2+ binding site, TIM-barrel fold, lyase; 1.70A {Vibrio cholerae} Back     alignment and structure
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A* Back     alignment and structure
>1f76_A Dihydroorotate dehydrogenase; monomer, alpha-beta-barrel, FMN binding domain, orotate complex, oxidoreductase; HET: MSE FMN ORO; 2.50A {Bacteria} SCOP: c.1.4.1 Back     alignment and structure
>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM barrel, oxidoreductase; HET: MLY FMN; 2.40A {Streptococcus mutans} Back     alignment and structure
>3rmj_A 2-isopropylmalate synthase; LEUA, truncation, neisseria MENI TIM barrel, catalytic domain, dimer, leucine biosynthesis, ketoisovalerate; 1.95A {Neisseria meningitidis} Back     alignment and structure
>3eeg_A 2-isopropylmalate synthase; 11106D, beta barrel, PSI-II, structural genomics, protein structure initiative; 2.78A {Cytophaga hutchinsonii atcc 33406} Back     alignment and structure
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A Back     alignment and structure
>3s5o_A 4-hydroxy-2-oxoglutarate aldolase, mitochondrial; beta barrel, schiff base, hydroxyproline metabolis; HET: KPI; 1.97A {Homo sapiens} SCOP: c.1.10.0 PDB: 3s5n_A Back     alignment and structure
>3i65_A Dihydroorotate dehydrogenase homolog, mitochondrial; triazolopyrimidine,inhibitor, DSM1, FAD, flavoprotein, membrane, mitochondrion; HET: JZ8 FMN ORO LDA; 2.00A {Plasmodium falciparum 3D7} PDB: 3i68_A* 3i6r_A* 3o8a_A* 3sfk_A* Back     alignment and structure
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A* Back     alignment and structure
>3tak_A DHDPS, dihydrodipicolinate synthase; TIM barrel, lysine biosynthesis, pyruvate, lyase; 1.42A {Acinetobacter baumannii} PDB: 3pud_A* 3pue_A* 3pul_A 3rk8_A 3tce_A* 3tdf_A 3u8g_A 3uqn_A 4dxv_A Back     alignment and structure
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum} Back     alignment and structure
>2nuw_A 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho aldolase; TIM barrel, lyase; 1.80A {Sulfolobus acidocaldarius dsm 639} PDB: 2nux_A 2nuy_A Back     alignment and structure
>3b4u_A Dihydrodipicolinate synthase; structural genomics, PSI-2, MC protein structure initiative, midwest center for structural genomics; 1.20A {Agrobacterium tumefaciens str} Back     alignment and structure
>2wkj_A N-acetylneuraminate lyase; directed evolution, sialic acid mimetics, aldolase, S base, carbohydrate metabolism, N-acetylneuraminic acid LYAS; HET: KPI PYR; 1.45A {Escherichia coli} PDB: 2wnq_A 2xfw_A* 2wpb_A* 2wnz_A* 2ygy_A* 2wo5_A* 2wnn_A* 3lbm_A 3lbc_A 3lcf_A 3lcl_A 3lcg_A 3lch_A 3lci_A 1hl2_A 1fdy_A 1fdz_A 1nal_1 3lcx_A 3lcw_A Back     alignment and structure
>3flu_A DHDPS, dihydrodipicolinate synthase; TIM barrel, beta-alpha-barrel, amino-acid biosynthesis, diaminopimelate biosynthesis; 2.00A {Neisseria meningitidis serogroup B} SCOP: c.1.10.0 Back     alignment and structure
>3l21_A DHDPS, dihydrodipicolinate synthase; DAPA, dimer, RV2753C, lysine biosynthesis, amino-acid biosynthesis, diaminopimelate biosynthesis; HET: KPI CME; 2.10A {Mycobacterium tuberculosis} SCOP: c.1.10.1 PDB: 1xxx_A Back     alignment and structure
>3si9_A DHDPS, dihydrodipicolinate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, TIM barrel; 2.10A {Bartonella henselae} Back     alignment and structure
>3a5f_A Dihydrodipicolinate synthase; TIM barrel, enzyme, amino-acid biosynthesis, cytoplasm, diaminopimelate biosynthesis, lyase; HET: KPI; 1.19A {Clostridium botulinum A} PDB: 3bi8_A* 3ird_A* Back     alignment and structure
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A Back     alignment and structure
>2ehh_A DHDPS, dihydrodipicolinate synthase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.90A {Aquifex aeolicus} Back     alignment and structure
>1w3i_A EDA, 2-keto-3-deoxy gluconate aldolase; archaeal metabolism, pyruvate; 1.7A {Sulfolobus solfataricus} SCOP: c.1.10.1 PDB: 1w37_A 1w3n_A* 1w3t_A* 2yda_A* Back     alignment and structure
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0 Back     alignment and structure
>1f6k_A N-acetylneuraminate lyase; beta barrel; 1.60A {Haemophilus influenzae} SCOP: c.1.10.1 PDB: 1f5z_A 1f6p_A 1f73_A* 1f74_A* 1f7b_A* Back     alignment and structure
>2r91_A 2-keto-3-deoxy-(6-phospho-)gluconate aldolase; TIM barrel, thermophilic, lyase; 2.00A {Thermoproteus tenax} PDB: 2r94_A Back     alignment and structure
>2yxg_A DHDPS, dihydrodipicolinate synthase; MJ0244, TIM beta/alpha-barrel fold, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii DSM2661} Back     alignment and structure
>3qze_A DHDPS, dihydrodipicolinate synthase; alpha beta barrel, cytoplasmic; 1.59A {Pseudomonas aeruginosa} PDB: 3puo_A* 3noe_A 3ps7_A* 3s8h_A Back     alignment and structure
>4dpp_A DHDPS 2, dihydrodipicolinate synthase 2, chloroplastic; amino-acid biosynthesis, (S)-lysine biosynthesis VIA DAP PAT (beta/alpha)8-barrel; 2.00A {Arabidopsis thaliana} PDB: 4dpq_A* 3tuu_A* Back     alignment and structure
>3m5v_A DHDPS, dihydrodipicolinate synthase; TIM barrel, csgid, amino-acid biosynthesis, diaminopimelate biosynthesis, lyase, lysine biosynthesis; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.1.10.0 PDB: 3ler_A* Back     alignment and structure
>2r8w_A AGR_C_1641P; APC7498, dihydrodipicolinate synthase, agrobacterium tumefac C58, structural genomics, PSI-2; HET: MSE; 1.80A {Agrobacterium tumefaciens str} Back     alignment and structure
>3na8_A Putative dihydrodipicolinate synthetase; lyase; HET: MSE; 1.85A {Pseudomonas aeruginosa} Back     alignment and structure
>2v9d_A YAGE; dihydrodipicolinic acid synthase, N-acetyl neuraminate lyase, NAL, lyase, DHDPS, prophage; 2.15A {Escherichia coli} PDB: 2v8z_A 3nev_A* 3n2x_A* Back     alignment and structure
>2rfg_A Dihydrodipicolinate synthase; beta barrel, amino-acid biosynthesis, diaminopimelate biosyn lyase, lysine biosynthesis, schiff base; 1.50A {Hahella chejuensis} Back     alignment and structure
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A* Back     alignment and structure
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti} Back     alignment and structure
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A* Back     alignment and structure
>1o5k_A DHDPS, dihydrodipicolinate synthase; TM1521, structural genomics, J protein structure initiative, joint center for structural G lyase; HET: MCL; 1.80A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 3pb2_A 3pb0_A Back     alignment and structure
>2ojp_A DHDPS, dihydrodipicolinate synthase; dimer, lysine biosynthe lyase; HET: KGC GOL; 1.70A {Escherichia coli} PDB: 1yxc_A 1dhp_A 1yxd_A* 2ats_A* 3du0_A* 3c0j_A* 3ubs_A* 4eou_A* 3i7q_A* 3i7r_A* 3i7s_A* 2pur_A* 1s5v_A 1s5w_A 1s5t_A 3den_A* 2a6l_A 2a6n_A 3g0s_A Back     alignment and structure
>2ztj_A Homocitrate synthase; (beta/alpha)8 TIM barrel, substrate complex, amino-acid BIOS lysine biosynthesis, transferase; HET: AKG; 1.80A {Thermus thermophilus} PDB: 2ztk_A* 2zyf_A* 3a9i_A* Back     alignment and structure
>3qfe_A Putative dihydrodipicolinate synthase family PROT; seattle structural genomics center for infectious disease, S coccidioides, valley fever; 2.35A {Coccidioides immitis} Back     alignment and structure
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A* Back     alignment and structure
>1tv5_A Dhodehase, dihydroorotate dehydrogenase homolog, mitochondri, dihydroorotate; alpha-beta barrel, TIM barrel, oxidoreductase; HET: A26 FMN ORO N8E; 2.40A {Plasmodium falciparum} SCOP: c.1.4.1 Back     alignment and structure
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni} Back     alignment and structure
>3h5d_A DHDPS, dihydrodipicolinate synthase; lysine biosynthesis, amino-ACI biosynthesis, schiff base, cytoplasm, diaminopimelate biosy lyase; HET: MES; 1.99A {Streptococcus pneumoniae} Back     alignment and structure
>3e96_A Dihydrodipicolinate synthase; structural genomics, nysgrc, target 9375C, operon, PSI-2; 1.80A {Bacillus clausii ksm-k16} SCOP: c.1.10.0 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 397
d1r5ya_372 c.1.20.1 (A:) Queosine tRNA-guanine transglycosyla 2e-67
d1iq8a1355 c.1.20.1 (A:6-360) Archaeosine tRNA-guanine transg 5e-40
>d1r5ya_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase {Zymomonas mobilis [TaxId: 542]} Length = 372 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: tRNA-guanine transglycosylase
family: tRNA-guanine transglycosylase
domain: Queosine tRNA-guanine transglycosylase
species: Zymomonas mobilis [TaxId: 542]

 Score =  216 bits (550), Expect = 2e-67
 Identities = 90/390 (23%), Positives = 162/390 (41%), Gaps = 34/390 (8%)

Query: 1   MKFAVKALSSGKARAGVVHLGSCPSPIETPCLLLSTRKGLPIFISPDLLSSLPSPDSNLL 60
             F++ A   GKAR G + +      I TP  +          + P+ + +     ++++
Sbjct: 4   FSFSIAA-REGKARTGTIEMKR--GVIRTPAFMPVGTAATVKALKPETVRAT---GADII 57

Query: 61  QFSPLHFSEGPSPKTISSIGGLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFET- 119
             +  H    P  + I+ +GGLH  +G             +  L      ++ G +F++ 
Sbjct: 58  LGNTYHLMLRPGAERIAKLGGLHSFMGWDRPILTDSGGYQVMSLSSLTKQSEEGVTFKSH 117

Query: 120 -PCGRRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKRNKTSVDRTVKWLDECIAR-- 176
               R ++ P   +E+   +  ++     +  P  A   R  +S++R+++W         
Sbjct: 118 LDGSRHMLSPERSIEIQHLLGSDIVMAFDECTPYPATPSRAASSMERSMRWAKRSRDAFD 177

Query: 177 ----SPAGGAVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAV 232
                    A+FG   G      R++ A  +A     GY +GG  +GE  +E   +L+  
Sbjct: 178 SRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGYAVGGLAVGEGQDEMFRVLDFS 237

Query: 233 TDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYN 292
              LP D P  + G+G P++++  V  G+D+FD          G A T+           
Sbjct: 238 VPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTW----------- 286

Query: 293 YQLSDQGSDRTKINLRATVYRKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLE 352
                       IN+R   + +D  P+  +C C  CQ  ++AYI+HL+   E+L  +L+ 
Sbjct: 287 ---------DGPINIRNARFSEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLMT 337

Query: 353 IHNTHHYLGFFRSIREAIKEGCFEQFQKKF 382
            HN   Y    + IR++I EG F QF + F
Sbjct: 338 EHNIAFYQQLMQKIRDSISEGRFSQFAQDF 367
>d1iq8a1 c.1.20.1 (A:6-360) Archaeosine tRNA-guanine transglycosylase, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Length = 355 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query397
d1r5ya_372 Queosine tRNA-guanine transglycosylase {Zymomonas 100.0
d1iq8a1355 Archaeosine tRNA-guanine transglycosylase, N-termi 100.0
d1xkya1292 Dihydrodipicolinate synthase {Bacillus anthracis [ 91.08
d1rd5a_261 Trp synthase alpha-subunit {Maize (Zea mays) [TaxI 90.83
d1geqa_248 Trp synthase alpha-subunit {Archaeon Pyrococcus fu 90.71
d1nvma2289 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic d 90.26
d1rqba2303 Transcarboxylase 5S subunit, N-terminal domain {Pr 89.31
d1qopa_267 Trp synthase alpha-subunit {Salmonella typhimurium 88.95
d1o5ka_295 Dihydrodipicolinate synthase {Thermotoga maritima 87.39
d1xxxa1296 Dihydrodipicolinate synthase {Mycobacterium tuberc 85.08
d1hl2a_295 N-acetylneuraminate lyase {Escherichia coli [TaxId 83.78
d1f74a_293 N-acetylneuraminate lyase {Haemophilus influenzae 82.76
d2a6na1292 Dihydrodipicolinate synthase {Escherichia coli [Ta 80.26
d1gtea2312 Dihydropyrimidine dehydrogenase, domain 4 {Pig (Su 80.02
>d1r5ya_ c.1.20.1 (A:) Queosine tRNA-guanine transglycosylase {Zymomonas mobilis [TaxId: 542]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: tRNA-guanine transglycosylase
family: tRNA-guanine transglycosylase
domain: Queosine tRNA-guanine transglycosylase
species: Zymomonas mobilis [TaxId: 542]

Probab=100.00  E-value=2.1e-101  Score=766.79  Aligned_cols=361  Identities=25%  Similarity=0.487  Sum_probs=337.1

Q ss_pred             CeEEEEeecCCCceeEEEEcCCCCceeecCcccccccCcccCcCCHHHHhcCCCCCCceeecccchhccCCCcccccccC
Q 015981            1 MKFAVKALSSGKARAGVVHLGSCPSPIETPCLLLSTRKGLPIFISPDLLSSLPSPDSNLLQFSPLHFSEGPSPKTISSIG   80 (397)
Q Consensus         1 m~F~v~~~~~~~aR~G~l~~~~~~~~i~TP~f~~~t~~g~~~~Lt~d~l~~~~~~~~~~~~~n~~~l~~~~~~~~~~~~g   80 (397)
                      |+|+|... +++||+|+|.++  |++|+||+||++|++|++++||||+++++   +.++++.|+||++++|+.+.+++.|
T Consensus         4 ~~Fei~~~-d~~AR~G~L~~~--~g~i~TP~fmpv~t~g~v~~ltpd~l~~~---g~~~il~Ntyhl~~~pg~~~i~~~g   77 (372)
T d1r5ya_           4 FSFSIAAR-EGKARTGTIEMK--RGVIRTPAFMPVGTAATVKALKPETVRAT---GADIILGNTYHLMLRPGAERIAKLG   77 (372)
T ss_dssp             CEEEEEEE-ETTEEEEEEEET--TEEEEESEEECBCTTSSCTTCCHHHHHHT---TCSCEEEEHHHHHHTTCHHHHHHTT
T ss_pred             eEEEEEec-cCceeeEEEEEC--CEEeECCEEEecCCCCcCCcCCHHHHHHc---CCCEEechHHHHHhCCccHHHHhcc
Confidence            78999432 478999999999  78999999999999999999999999998   8999999999999999999999999


Q ss_pred             CcccccCCCCceeEeecCCccCCccCCCCCCCCceEEEcC-CC-ceecChhhHHHHHHhcCCcEEEEcCCCCCCCCCHHH
Q 015981           81 GLHQMVGLHEYGFAAVARDSIQCLPECGSTNKTGASFETP-CG-RRLIKPVEYMEMITSMKPNLWATLADEVPAWANNKR  158 (397)
Q Consensus        81 Glh~f~~~~~~~~~~sg~~~~~~~~~~~~~~~~gv~~~s~-~G-~~~ltpe~~~~~q~~i~pDi~~~L~d~~~~~~~~kr  158 (397)
                      |||+|++|+++++||||+||+++++....++++||.|+|+ +| ++.+|||+++++|+.+||||+|+|||++++..+.++
T Consensus        78 glh~f~~~~~~iltdsGg~q~~sl~~~~~~~~~gv~f~s~~~g~~~~ltpe~~i~~q~~ig~DI~~~Ldd~~~~~~~~~~  157 (372)
T d1r5ya_          78 GLHSFMGWDRPILTDSGGYQVMSLSSLTKQSEEGVTFKSHLDGSRHMLSPERSIEIQHLLGSDIVMAFDECTPYPATPSR  157 (372)
T ss_dssp             CHHHHHTCCSCEEEECSHHHHC-CC-CCEEETTEEEC---------CBCHHHHHHHHHHHTCSEEECCCCCCCSSCCHHH
T ss_pred             chhhhhccccccccccCcccccccccccccCCCCceeeeccCCceeeechHHHHHHHHhhCCceEeeccccccccchhHH
Confidence            9999999999999999999999999999999999999997 55 789999999999999999999999999998999999


Q ss_pred             HHHHHHHHHHHHHHHHHhCCC------CCCeEEeecCCCCHHHHHHHHHHHHhcCCceEEEcCccCCCchhhHHHHHHHH
Q 015981          159 NKTSVDRTVKWLDECIARSPA------GGAVFGSIVGGSNIEERKRCAQEVAVRNVSGYWIGGFGLGESMEERPSLLNAV  232 (397)
Q Consensus       159 ~~~sverT~~w~~~~l~~~~~------~~~lf~~iqGg~~~~lR~~sa~~l~~~~~~G~~IgGl~~ge~~~~~~~~v~~~  232 (397)
                      ++++|+||.+|+++|++...+      .+.+|||||||.++|||++|++++.+++++||+|||++.|++.+++.++|+++
T Consensus       158 ~~~~~~rt~~w~~~~~~~~~~~~~~~~~~~lfgivqGg~~~dlR~~s~~~l~~~~~~G~aiGgl~~~~~~~~~~~~v~~~  237 (372)
T d1r5ya_         158 AASSMERSMRWAKRSRDAFDSRKEQAENAALFGIQQGSVFENLRQQSADALAEIGFDGYAVGGLAVGEGQDEMFRVLDFS  237 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSHHHHHHCEEEEEECCTTCHHHHHHHHHHHHHHCCSEEEECSCSSSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHhcccccCcccceecccccchhhhHHHHHHHHHHhhccCceeccccccCcchHHHHHHHHhc
Confidence            999999999999999875322      24599999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCCcccccCCCChHHHHHHHHcCCcEEecchhHHhhhcceeecccCCccccccccccccCCCCCcceeeecCccc
Q 015981          233 TDNLPKDWPRMICGLGLPEEVLQGVAAGVDLFDSAYIYHLTIGGFALTFPLDRTEKNDYNYQLSDQGSDRTKINLRATVY  312 (397)
Q Consensus       233 ~~~Lp~~kpr~l~G~g~P~~il~~v~~GvD~FD~~~p~~~a~~G~al~f~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~  312 (397)
                      .+.||.+||||+||+|+|.+|+.+|++|||+|||++|++.||+|+||++                    .+.+||++.+|
T Consensus       238 ~~~Lp~~kPr~l~Gvg~P~~il~~V~~GvD~FD~~~p~r~Ar~G~alt~--------------------~g~~~l~~~~~  297 (372)
T d1r5ya_         238 VPMLPDDKPHYLMGVGKPDDIVGAVERGIDMFDCVLPTRSGRNGQAFTW--------------------DGPINIRNARF  297 (372)
T ss_dssp             GGGSCTTSCEEETTCCSHHHHHHHHTTTCCEEECSHHHHHHHTTEECCT--------------------TCCEETTSGGG
T ss_pred             ccccccccceeecCCCCHHHHHHhhccCCCcccccccchhhhccceEec--------------------CCceeeccccc
Confidence            9999999999999999999999999999999999999999999999996                    47899999999


Q ss_pred             ccCCCCCCCCCCCcccccccHHHHHHHhhcChhhHhHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 015981          313 RKDATPIVEDCCCYTCQNHTKAYINHLLNVHEMLAQILLEIHNTHHYLGFFRSIREAIKEGCFEQFQKKFVQSRR  387 (397)
Q Consensus       313 ~~D~~pl~~~C~C~tC~~~traYlhHLl~~~Eml~~~LL~~HNl~~~~~~~~~iR~aI~~g~l~~~~~~f~~~~~  387 (397)
                      +.|++||+++|+||+|++|||||||||++++||+|++||++||||+|.+||++||+||++|+|++|+++|+++|+
T Consensus       298 ~~d~~Pl~~~C~C~~C~~~sraYl~HL~~~~E~l~~~Ll~iHNl~~~~~~~~~iR~aI~~g~f~~~~~~f~~~y~  372 (372)
T d1r5ya_         298 SEDLKPLDSECHCAVCQKWSRAYIHHLIRAGEILGAMLMTEHNIAFYQQLMQKIRDSISEGRFSQFAQDFRARYF  372 (372)
T ss_dssp             TTCCSCSSSSCCSHHHHHCCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHC
T ss_pred             cccCCCcCCCCCChhhcccCHHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhhC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999998873
>d1iq8a1 c.1.20.1 (A:6-360) Archaeosine tRNA-guanine transglycosylase, N-terminal domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1xkya1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Bacillus anthracis [TaxId: 1392]} Back     information, alignment and structure
>d1rd5a_ c.1.2.4 (A:) Trp synthase alpha-subunit {Maize (Zea mays) [TaxId: 4577]} Back     information, alignment and structure
>d1geqa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1nvma2 c.1.10.5 (A:2-290) 4-hydroxy-2-oxovalerate aldolase DmpG, catalytic domain {Pseudomonas sp. [TaxId: 306]} Back     information, alignment and structure
>d1rqba2 c.1.10.5 (A:4-306) Transcarboxylase 5S subunit, N-terminal domain {Propionibacterium freudenreichii shermanii [TaxId: 1752]} Back     information, alignment and structure
>d1qopa_ c.1.2.4 (A:) Trp synthase alpha-subunit {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1o5ka_ c.1.10.1 (A:) Dihydrodipicolinate synthase {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1xxxa1 c.1.10.1 (A:5-300) Dihydrodipicolinate synthase {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1hl2a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1f74a_ c.1.10.1 (A:) N-acetylneuraminate lyase {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d2a6na1 c.1.10.1 (A:1-292) Dihydrodipicolinate synthase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gtea2 c.1.4.1 (A:533-844) Dihydropyrimidine dehydrogenase, domain 4 {Pig (Sus scrofa) [TaxId: 9823]} Back     information, alignment and structure