Citrus Sinensis ID: 015985

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------
Protein Sequence
MAPKPPPLLAAKFPHRLHSLRTFINARVKWVPDPFLDDAVSKEKNLKQILSFKNQLVHSPSKSLPLSSLSLLKPHLDLPTTTALKFFQKYPSFFTLFQPCPSLPLHVKLTPQALTLHKEESAIHGLPAQRDDAVRRLAKLLMLTNAGKLPFYVINRFKFDLGLPYNYVCEVKDSVANKEVLALELVSWRKELAVSEMERRSCGGDLLNLKKGMCLRFSMNFPRGFDLEKRVMNWVEQWQDLPYISPYEDAFHFAPSGDLAEKWAVAVLHELLWLLVSKKTERDNLFCLGDYLGFGDRFKRALRHHPGIFYVSNKIRTQTVVLREAYRKDFLVERHPLMGMRHRYIHLMNKSNDRRKPVGVVAFGSQRKTKDVKTTLAGRMNAELEDIVLDEAVKIEI
Secondary Structure (PSIPRED)
ccccccccccccccccccccccEEccccccccccHHHHHHHHHHcHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHccccEEEcccccccccEEEccHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccccccHHHHHHHHHHcccccccccccccccccccEEEEEEcccccccccHHHHHHccccccccccccccccEEEEccccccccHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHccccEEEEEcccEEEEEEEEccccccccccccHHHHHHHHHHHHHcccccccccccccccccccccHHHHccccccccccccccHHHHHHccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccHHccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHcccccEcHHHHHHHHHHccccccHHHHHHHHcccEEEEEccccccccEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHccccHHHHHHHccccccccccEEEEEcccccccHcHHHHHHHcccHHHccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHccccHHHHHHHHHcccEEEEEcccccEEEEEEEcccccccccccHHHHHHHHHHHHHHccccHHcccccccccHccccccHHHccccccccccccccccccccccc
Coil and Loop (DISEMBL)
mapkpppllaakfphrlHSLRTFINARvkwvpdpflddavSKEKNLKQILSFKnqlvhspskslplsslsllkphldlptttALKFFqkypsfftlfqpcpslplhvkltpqaltlhkeesaihglpaqRDDAVRRLAKLLMLtnagklpfyVINRFkfdlglpynyvcevkdsvANKEVLALELVSWRKELAVSEMERRscggdllnlkkgmclrfsmnfprgfdlEKRVMNWVEQwqdlpyispyedafhfapsgdlAEKWAVAVLHELLWLLVSKKTERDNLFCLGDYLGFGDRFKRAlrhhpgifyvsnkiRTQTVVLREAYRKDflverhplmgmRHRYIHLMnksndrrkpvgvvafgsqrktkDVKTTLAGRMNAELEDIVLDEAVKIEI
Flexible Loop (DISEMBL)
MAPKPPPLLAAKFPHRLHSLRTFINARVKWVPDPFLDDAVSKEKNLKQILSFKNQLVHSPSKSLPLSSLSLLKPHLDLPTTTALKFFQKYPSFFTLFQPCPSLPLHVKLTPQALTLHKEesaihglpaqRDDAVRRLAKLLMltnagklpfyVINRFKFDLGLPYNYVCEVKDSVANKEVLALELVSWRKELAvsemerrscggdllnlkkgMCLRFSMNFPRGFDLEKRVMNWVEQWQDLPYISPYEDAFHFAPSGDLAEKWAVAVLHELLWLLVSKKTERDNLFCLGDYLGFGDRFKRALRhhpgifyvsnkirtqtVVLREAYRKDflverhplmgMRHRYIHLmnksndrrkpvgvvafgsqrktkdvkttlagrmnaeledivldeavkiei
Low Complexity Region (SEG)
MapkpppllaakFPHRLHSLRTFINARVKWVPDPFLDDAVSKEKNLKQILSFKNQLVhspskslplsslsllkphlDLPTTTALKFFQKYPSFFTLFQPCPSLPLHVKLTPQALTLHKEESAIHGLPAQRDDAVRRLAKLLMLTNAGKLPFYVINRFKFDLGLPYNYVCEVKDSVANKEVLALELVSWRKELAVSEMERRSCGGDLLNLKKGMCLRFSMNFPRGFDLEKRVMNWVEQWQDLPYISPYEDAFHFAPSGDLAEKWAVAVLHELLWLLVSKKTERDNLFCLGDYLGFGDRFKRALRHHPGIFYVSNKIRTQTVVLREAYRKDFLVERHPLMGMRHRYIHLMNKSNDRRKPVGVVAFGSQRKTKDVKTTLAGRMNAELEDIVLDEAVKIEI
Disordered region (IsUnstruct)
*********AAKFPHRLHSLRTFINARVKWVPDPFLDDAVSKEKNLKQILSFKNQL************LSLLKPHLDLPTTTALKFFQKYPSFFTLFQPCPSLPLHVKLTPQALTLHKEESAIHGLPAQRDDAVRRLAKLLMLTNAGKLPFYVINRFKFDLGLPYNYVCEVKDSVANKEVLALELVSWRKELAVSEMERRSCGGDLLNLKKGMCLRFSMNFPRGFDLEKRVMNWVEQWQDLPYISPYEDAFHFAPSGDLAEKWAVAVLHELLWLLVSKKTERDNLFCLGDYLGFGDRFKRALRHHPGIFYVSNKIRTQTVVLREAYRKDFLVERHPLMGMRHRYIHLMNK*******VGVVAF********************LEDIVL********
Disordered Region (DISOPRED)
***************************VKWVPDPFLDDAVSKEKNLKQILSFKNQLVHSPS*SL***SLSLLKPHLDLPTTTALKFFQKYPSFFTLFQPCPSLPLHVKLTPQALTLHKEESAI***PAQRDDAVRRLAKLLMLTNAGKLPFYVINRFKFDLGLPYNYVCEVKDSVANKEVLALELVSWRKELAVS*********************FSMNFPRGFDLEKRVMNWVEQWQDLPYISPYEDAFHF*P*GDLAEKWAVAVLHELLWLLVSKKTERDNLFCLGDYLGFGDRFKRALRHHPGIFYVSNKIRTQTVVLREAYRKDFLVERHPLMGMRHRYIHLMN*******************************************VK***
Disordered Region (DISEMBL)
MAPKPPPLLAAKFPHRLHSLRTFINARVKWVPDPFLDDAVSKEKNLKQILSFKNQLVHSPSKSLPLSSLSLLKPHLDLPTTTALKFFQKYPSFFTLFQPCPSLPLHVKLTPQALTLHKEESAIHGLPAQRDDAVRRLAKLLMLTNAGKLPFYVINRFKFDLGLPYNYVCEVKDSVANKEVLALELVSWRKELAVSEMERRSCGGDLLNLKKGMCLRFSMNFPRGFDLEKRVMNWVEQWQDLPYISPYEDAFHFAPSGDLAEKWAVAVLHELLWLLVSKKTERDNLFCLGDYLGFGDRFKRALRHHPGIFYVSNKIRTQTVVLREAYRKDFLVERHPLMGMRHRYIHLMNKSNDRRKPVGVVAFGSQRKTKDVKTTLAGRMNAELEDIVLDEAVKIEI
Disordered Region (DISPRO)
****PPPLLAAKFPHRLHSLRTFINARVKWVPDPFLDDAVSKEKNLKQILSFKNQLVHSPSKSLPLSSLSLLKPHLDLPTTTALKFFQKYPSFFTLFQPCPSLPLHVKLTPQALTLHKEESAIHGLPAQRDDAVRRLAKLLMLTNAGKLPFYVINRFKFDLGLPYNYVCEVKDSVANKEVLALELVSWRKELAVSEMERRSCGGDL**LKKGMCLRFSMNFPRGFDLEKRVMNWVEQWQDLPYISPYEDAFHFAPSGDLAEKWAVAVLHELLWLLVSKKTERDNLFCLGDYLGFGDRFKRALRHHPGIFYVSNKIRTQTVVLREAYRKDFLVERHPLMGMRHRYIHLMNKS**********************************************
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAPKPPPLLAAKFPHRLHSLRTFINARVKWVPDPFLDDAVSKEKNLKQILSFKNQLVHSPSKSLPLSSLSLLKPHLDLPTTTALKFFQKYPSFFTLFQPCPSLPLHVKLTPQALTLHKEESAIHGLPAQRDDAVRRLAKLLMLTNAGKLPFYVINRFKFDLGLPYNYVCEVKDSVANKEVLALELVSWRKELAVSEMERRSCGGDLLNLKKGMCLRFSMNFPRGFDLEKRVMNWVEQWQDLPYISPYEDAFHFAPSGDLAEKWAVAVLHELLWLLVSKKTERDNLFCLGDYLGFGDRFKRALRHHPGIFYVSNKIRTQTVVLREAYRKDFLVERHPLMGMRHRYIHLMNKSNDRRKPVGVVAFGSQRKTKDVKTTLAGRMNAELEDIVLDEAVKIEI
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	397
255586480	440	conserved hypothetical protein [Ricinus	0.969	0.875	0.583	1e-128
15233788	395	ubiquitin carboxyl-terminal hydrolase-li	0.937	0.941	0.609	1e-118
116830601	396	unknown [Arabidopsis thaliana]	0.937	0.939	0.609	1e-118
224129390	378	predicted protein [Populus trichocarpa]	0.856	0.899	0.635	1e-117
356545147	357	PREDICTED: uncharacterized protein LOC10	0.861	0.957	0.592	1e-116
225448140	396	PREDICTED: uncharacterized protein LOC10	0.838	0.840	0.601	1e-114
147770106	396	hypothetical protein VITISV_042261 [Viti	0.851	0.853	0.594	1e-112
297799566	369	hypothetical protein ARALYDRAFT_492418 [	0.869	0.934	0.585	1e-105
357471727	332	hypothetical protein MTR_4g053720 [Medic	0.795	0.951	0.552	1e-103
359478161	660	PREDICTED: uncharacterized protein LOC10	0.959	0.577	0.413	3e-81

>gi|255586480|ref|XP_002533882.1| conserved hypothetical protein [Ricinus communis] gi|223526167|gb|EEF28500.1| conserved hypothetical protein [Ricinus communis]

 Score =  464 bits (1194), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 247/423 (58%), Positives = 305/423 (72%), Gaps = 38/423 (8%)

Query: 7   PLLAAKFPH---RLHSLRTFINARVKWVPDPFLDDAVSKEKNLKQILSFKNQLVHSPSKS 63
           P    K PH   +L+ LRTFI ARVKWV DP LD AVSKEK+L+Q++SFKNQ++ SPSK+
Sbjct: 3   PFHGRKLPHHRNQLNHLRTFIAARVKWVRDPCLDKAVSKEKDLRQVISFKNQIISSPSKT 62

Query: 64  LPLSSLSLLKPHLDLPTTTALKFFQKYPSFFTLFQPCPSLPLHVKLTPQALTLHKEESAI 123
           + LSSLSLLK H +L + TA KF + YPS FT FQP PSLPLHVKLT QAL++HKEE  +
Sbjct: 63  VSLSSLSLLKTHFNL-SNTAHKFLENYPSLFTHFQPSPSLPLHVKLTHQALSIHKEEQLV 121

Query: 124 HGLPAQRDDAVRRLAKLLMLTNAGKLPFYVINRFKFDLGLPYNY-------------VCE 170
           +   + RDDAV++LAKLLMLT   +LP +VI+R KFDLGLPYNY             VCE
Sbjct: 122 YSSFSYRDDAVKKLAKLLMLTKVSRLPLHVIDRLKFDLGLPYNYITELLSDYPEYFNVCE 181

Query: 171 VKDSVAN-KEVLALELVSWRKELAVSEMERRSCGGDLLNLKKGMCLRFSMNFPRGFDLEK 229
            KD  +N KE   LELVSWR ELAVSEME+R   GDL N+KKG  + FS+++P GFDL+K
Sbjct: 182 GKDPFSNNKETFFLELVSWRDELAVSEMEKRVAFGDLRNVKKGERIGFSLSYPNGFDLKK 241

Query: 230 RVMNWVEQWQDLPYISPYEDAFHFAPSGDLAEKWAVAVLHELLWLLVSKKTERDNLFCLG 289
           +V +WV +WQ LPYISPYE+AFH  P+G  AEKW V+VLHELLWLLVSKKT+++N+  LG
Sbjct: 242 KVKDWVFEWQGLPYISPYENAFHLNPNGGHAEKWVVSVLHELLWLLVSKKTQKENMLILG 301

Query: 290 DYLGFGDRFKRALRHHPGIFYVSNKIRTQTVVLREAYRKDFLVERHPLMGMRHRYIHLMN 349
           +Y+G GDRF++AL HHPGIFYVSNKIRTQTVVLREAYRKDF+V +HPLMG+R RYIHLMN
Sbjct: 302 EYMGLGDRFRKALVHHPGIFYVSNKIRTQTVVLREAYRKDFMVVKHPLMGIRFRYIHLMN 361

Query: 350 KSNDRRKPVGVVAFG-----------SQRKTKDVKTTLAGR---------MNAELEDIVL 389
           KS ++ +     AF            S+RK + V  T +GR          ++E ED  +
Sbjct: 362 KSIEKERKSADGAFRYWSKRQVASSISKRKERTVMITASGRGEEQKSNGSSDSEFEDSDI 421

Query: 390 DEA 392
            E+
Sbjct: 422 SES 424

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15233788|ref|NP_194163.1| ubiquitin carboxyl-terminal hydrolase-like protein [Arabidopsis thaliana] gi|5051774|emb|CAB45067.1| putative protein [Arabidopsis thaliana] gi|7269282|emb|CAB79342.1| putative protein [Arabidopsis thaliana] gi|91805609|gb|ABE65533.1| hypothetical protein At4g24320 [Arabidopsis thaliana] gi|332659489|gb|AEE84889.1| ubiquitin carboxyl-terminal hydrolase-like protein [Arabidopsis thaliana]

 Score =  431 bits (1108), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/387 (60%), Positives = 284/387 (73%), Gaps = 15/387 (3%)

Query: 10  AAKFPHRLHSLRTFINARVKWVPDPFLDDAVSKEKNLKQILSFKNQLVHSPSKSLPLSSL 69
             K    L   RTF+NARVKWV D +LD+AV +EKNLKQ++S K+++V SPSKSLPLSSL
Sbjct: 5   TTKLARALQQRRTFVNARVKWVSDHYLDEAVQREKNLKQVISLKDRIVSSPSKSLPLSSL 64

Query: 70  SLLKPHLDLPTTTALKFFQKYPSFFTLFQPCPSLPLHVKLTPQALTLHKEESAIHGLPAQ 129
           SLLKP ++L  T A  FFQKYPS FT FQP PS PLHV+LTPQALTLHKEE  IH  P Q
Sbjct: 65  SLLKPLVNLHITAA-AFFQKYPSVFTTFQPSPSHPLHVRLTPQALTLHKEEETIHLSPPQ 123

Query: 130 RDDAVRRLAKLLMLTNAGKLPFYVINRFKFDLGLPYNY-------------VCEVKDSVA 176
           R+  V+RL K LMLT AG LP YV++RF+FDLGLP +Y             V E+KD + 
Sbjct: 124 RNVTVQRLTKFLMLTGAGSLPLYVLDRFRFDLGLPRDYITSLIGDYPEYFEVTEIKDRLT 183

Query: 177 NKEVLALELVSWRKELAVSEMERRSCGGDLLNLKKGMCLRFSMNFPRGFDLEKRVMNWVE 236
            ++ LAL + S R  L VSEMERR    D   +KKG+ +R+SMNFP+G++L KRV NWVE
Sbjct: 184 GEKTLALTISSRRNNLPVSEMERREATIDGSRVKKGLRIRYSMNFPKGYELHKRVKNWVE 243

Query: 237 QWQDLPYISPYEDAFHFAPSGDLAEKWAVAVLHELLWLLVSKKTERDNLFCLGDYLGFGD 296
           QWQ+LPYISPYE+AFH     D AEKWAVAVLHELL+LLVSKKTE DN+ CLG+YLGFG 
Sbjct: 244 QWQNLPYISPYENAFHLGSYSDQAEKWAVAVLHELLFLLVSKKTETDNVICLGEYLGFGM 303

Query: 297 RFKRALRHHPGIFYVSNKIRTQTVVLREAYRKDFLVERHPLMGMRHRYIHLMNKSNDRRK 356
           RFK+AL HHPGIFY+S+KIRTQTVVLREAY K FL+E+HPLMG+RH+YI+LM+KS   +K
Sbjct: 304 RFKKALVHHPGIFYMSHKIRTQTVVLREAYHKVFLLEKHPLMGIRHQYIYLMSKSGRGKK 363

Query: 357 PVGVVAFG-SQRKTKDVKTTLAGRMNA 382
              V     S RK + +K    G + A
Sbjct: 364 RDYVHGVERSNRKKRVIKACEDGEIYA 390

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116830601|gb|ABK28258.1| unknown [Arabidopsis thaliana]

 Score =  431 bits (1107), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/387 (60%), Positives = 284/387 (73%), Gaps = 15/387 (3%)

Query: 10  AAKFPHRLHSLRTFINARVKWVPDPFLDDAVSKEKNLKQILSFKNQLVHSPSKSLPLSSL 69
             K    L   RTF+NARVKWV D +LD+AV +EKNLKQ++S K+++V SPSKSLPLSSL
Sbjct: 5   TTKLARALQQRRTFVNARVKWVSDHYLDEAVQREKNLKQVISLKDRIVSSPSKSLPLSSL 64

Query: 70  SLLKPHLDLPTTTALKFFQKYPSFFTLFQPCPSLPLHVKLTPQALTLHKEESAIHGLPAQ 129
           SLLKP ++L  T A  FFQKYPS FT FQP PS PLHV+LTPQALTLHKEE  IH  P Q
Sbjct: 65  SLLKPLVNLHITAA-AFFQKYPSVFTTFQPSPSHPLHVRLTPQALTLHKEEETIHLSPPQ 123

Query: 130 RDDAVRRLAKLLMLTNAGKLPFYVINRFKFDLGLPYNY-------------VCEVKDSVA 176
           R+  V+RL K LMLT AG LP YV++RF+FDLGLP +Y             V E+KD + 
Sbjct: 124 RNVTVQRLTKFLMLTGAGSLPLYVLDRFRFDLGLPRDYITSLIGDYPEYFEVTEIKDRLT 183

Query: 177 NKEVLALELVSWRKELAVSEMERRSCGGDLLNLKKGMCLRFSMNFPRGFDLEKRVMNWVE 236
            ++ LAL + S R  L VSEMERR    D   +KKG+ +R+SMNFP+G++L KRV NWVE
Sbjct: 184 GEKTLALTISSRRNNLPVSEMERREATIDGSRVKKGLRIRYSMNFPKGYELHKRVKNWVE 243

Query: 237 QWQDLPYISPYEDAFHFAPSGDLAEKWAVAVLHELLWLLVSKKTERDNLFCLGDYLGFGD 296
           QWQ+LPYISPYE+AFH     D AEKWAVAVLHELL+LLVSKKTE DN+ CLG+YLGFG 
Sbjct: 244 QWQNLPYISPYENAFHLGSYSDQAEKWAVAVLHELLFLLVSKKTETDNVICLGEYLGFGM 303

Query: 297 RFKRALRHHPGIFYVSNKIRTQTVVLREAYRKDFLVERHPLMGMRHRYIHLMNKSNDRRK 356
           RFK+AL HHPGIFY+S+KIRTQTVVLREAY K FL+E+HPLMG+RH+YI+LM+KS   +K
Sbjct: 304 RFKKALVHHPGIFYMSHKIRTQTVVLREAYHKVFLLEKHPLMGIRHQYIYLMSKSGRGKK 363

Query: 357 PVGVVAFG-SQRKTKDVKTTLAGRMNA 382
              V     S RK + +K    G + A
Sbjct: 364 RDYVHGVERSNRKKRVIKACEDGEIYA 390

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224129390|ref|XP_002328705.1| predicted protein [Populus trichocarpa] gi|222839003|gb|EEE77354.1| predicted protein [Populus trichocarpa]

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 225/354 (63%), Positives = 275/354 (77%), Gaps = 14/354 (3%)

Query: 8   LLAAKFPHRLHSLRTFINARVKWVPDPFLDDAVSKEKNLKQILSFKNQLVHSPSKSLPLS 67
           L + K PH+L+  RTFI AR+KW  DP+LD AVSKEK+LKQ++S KNQL+ SPSKSLPLS
Sbjct: 3   LYSTKLPHQLNQARTFIAARIKWACDPYLDTAVSKEKDLKQVISIKNQLISSPSKSLPLS 62

Query: 68  SLSLLKPHLDLPTTTALKFFQKYPSFFTLFQPCPSLPLHVKLTPQALTLHKEESAIHGLP 127
           SLSLLKP+ ++ +TTAL FF KY + F+ FQP PSLP H+KLTPQA++LHKEE  I    
Sbjct: 63  SLSLLKPYFNI-STTALNFFHKYSTVFSQFQPSPSLPFHIKLTPQAISLHKEEQLILKSQ 121

Query: 128 AQRDDAVRRLAKLLMLTNAGKLPFYVINRFKFDLGLPYNY-------------VCEVKDS 174
             RDD ++RLAKLLML+ A +LP ++++RFK+DLGLP++Y             VCE KD 
Sbjct: 122 PLRDDTIKRLAKLLMLSGAKRLPLHIVDRFKYDLGLPHDYITALLSDYPEYFNVCEDKDC 181

Query: 175 VANKEVLALELVSWRKELAVSEMERRSCGGDLLNLKKGMCLRFSMNFPRGFDLEKRVMNW 234
           + NK+   LELVSW+ ELAVSEME+R    DL N+K+G  + F +NFP GFDL+K+V +W
Sbjct: 182 LTNKDTFFLELVSWKDELAVSEMEKRVSLEDLRNVKRGERIGFPLNFPNGFDLKKKVRDW 241

Query: 235 VEQWQDLPYISPYEDAFHFAPSGDLAEKWAVAVLHELLWLLVSKKTERDNLFCLGDYLGF 294
           V +WQ LPYISPYE+AFH  P+GD AEKW V VLHELLWLLVSKKTE++N+  LGDYLGF
Sbjct: 242 VFEWQGLPYISPYENAFHLNPNGDQAEKWTVTVLHELLWLLVSKKTEKENVLQLGDYLGF 301

Query: 295 GDRFKRALRHHPGIFYVSNKIRTQTVVLREAYRKDFLVERHPLMGMRHRYIHLM 348
           G+RF +AL HHPGIFYVSNKIRTQTVVLREAYRK FL+ +H LMGMR RYI LM
Sbjct: 302 GNRFNKALVHHPGIFYVSNKIRTQTVVLREAYRKGFLMHKHLLMGMRFRYIRLM 355

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356545147|ref|XP_003541006.1| PREDICTED: uncharacterized protein LOC100785998 [Glycine max]

 Score =  423 bits (1088), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 211/356 (59%), Positives = 260/356 (73%), Gaps = 14/356 (3%)

Query: 9   LAAKFPHRLHSLRTFINARVKWVPDPFLDDAVSKEKNLKQILSFKNQLVHSPSKSLPLSS 68
           L+ K PH  + +RTF+N +VKWV DP+LD+AV KEK+LKQ +S +NQ++ SPSKSL + +
Sbjct: 3   LSCKHPHLFNHIRTFVNVKVKWVQDPYLDNAVLKEKDLKQTISLRNQIISSPSKSLSIYT 62

Query: 69  LSLLKPHLDLPTTTALKFFQKYPSFFTLFQPCPSLPLHVKLTPQALTLHKEESAIHGLPA 128
            S LK  L+LPTTT  KF  KY   F+ FQP P LP  VKLTP AL+LHKEE A+H  P 
Sbjct: 63  ASQLKASLNLPTTTT-KFVDKYHCVFSQFQPGPGLPPVVKLTPLALSLHKEEMAVHNSPI 121

Query: 129 QRDDAVRRLAKLLMLTNAGKLPFYVINRFKFDLGLPYNYV-------------CEVKDSV 175
            R+D V+RLA+LLML    KLP YVI + K+D+GLP++YV             C V+D  
Sbjct: 122 NREDTVQRLARLLMLAGMSKLPLYVIEKLKWDMGLPHDYVTTLLAEYPDYFDVCVVEDPS 181

Query: 176 ANKEVLALELVSWRKELAVSEMERRSCGGDLLNLKKGMCLRFSMNFPRGFDLEKRVMNWV 235
           + KE+LALELVSW+KEL+VSE+E+R+        K+   + F +  P+GFDLEKRV  WV
Sbjct: 182 SGKELLALELVSWKKELSVSEIEKRAISLGYSGDKRRHDIAFPIFLPKGFDLEKRVKTWV 241

Query: 236 EQWQDLPYISPYEDAFHFAPSGDLAEKWAVAVLHELLWLLVSKKTERDNLFCLGDYLGFG 295
           E WQ LPY+SPYEDAFH   + D AEKW VA+LHELL L VSKKTERDNL C G+ LG  
Sbjct: 242 ENWQKLPYVSPYEDAFHLDSNSDQAEKWTVAILHELLSLFVSKKTERDNLLCFGECLGLA 301

Query: 296 DRFKRALRHHPGIFYVSNKIRTQTVVLREAYRKDFLVERHPLMGMRHRYIHLMNKS 351
            RFK+AL HHPGIFY+SNKIRTQTVVLREAYRKDFLV+ HPL+GMR+ YI+LMNK+
Sbjct: 302 LRFKKALVHHPGIFYISNKIRTQTVVLREAYRKDFLVKNHPLVGMRYWYINLMNKT 357

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225448140|ref|XP_002263729.1| PREDICTED: uncharacterized protein LOC100268137 [Vitis vinifera]

 Score =  417 bits (1071), Expect = e-114,   Method: Compositional matrix adjust.
 Identities = 207/344 (60%), Positives = 260/344 (75%), Gaps = 11/344 (3%)

Query: 21  RTFINARVKWVPDPFLDDAVSKEKNLKQILSFKNQLVHSPSKSLPLSSLSLLKPHLDLPT 80
           RTFI A++KWV DP+LD+AVSKEKNLK +L+ K  ++ +PSK+LP +  ++ KP   LPT
Sbjct: 19  RTFIAAKIKWVRDPYLDEAVSKEKNLKPLLALKTLILSAPSKTLPAAVAAVNKPQFRLPT 78

Query: 81  TTALKFFQKYPSFFTLFQPCPSLPLHVKLTPQALTLHKEESAIHGLPAQRDDAVRRLAKL 140
           T AL FF KYPS F +FQP P    HV+LTPQA+ LH EE A+H  PA+  +A  RLAK 
Sbjct: 79  T-ALNFFHKYPSVFRIFQPKPLSTPHVRLTPQAIALHNEELAVHASPARLQEAAERLAKF 137

Query: 141 LMLTNAGKLPFYVINRFKFDLGLPYNYV----CEVKD-----SVANKEVLALELVSWRKE 191
           LML  A +LP  +++ F+FDLGLP NY+    C+  +     S  + E+L LELVSWR+ 
Sbjct: 138 LMLAGARRLPLRIVDCFRFDLGLPDNYITGICCDFPEYFQISSGNDPELLDLELVSWREN 197

Query: 192 LAVSEMERRSCGGDLLNLKKGMCLRFSMNFPRGFDLEKRVMNWVEQWQDLPYISPYEDAF 251
           LA S +E+R+  G+  +++KGM + F M F RGFDL+++V +W++ WQ+LPYISPYE+ F
Sbjct: 198 LACSVLEKRAMNGNS-DIRKGMRIAFPMFFSRGFDLQRKVKDWLDDWQNLPYISPYENGF 256

Query: 252 HFAPSGDLAEKWAVAVLHELLWLLVSKKTERDNLFCLGDYLGFGDRFKRALRHHPGIFYV 311
           H  P+ D AEKWAVAVLHELL L+VSKKTERDN+FCLG+YLGFG RFK+AL  + GIFYV
Sbjct: 257 HLNPNSDQAEKWAVAVLHELLSLMVSKKTERDNIFCLGEYLGFGSRFKKALVRYSGIFYV 316

Query: 312 SNKIRTQTVVLREAYRKDFLVERHPLMGMRHRYIHLMNKSNDRR 355
           SNKIRTQTVVLREAYRKDFL+E HPLMGMRHRYIHLMNKS   R
Sbjct: 317 SNKIRTQTVVLREAYRKDFLLENHPLMGMRHRYIHLMNKSEKTR 360

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770106|emb|CAN72133.1| hypothetical protein VITISV_042261 [Vitis vinifera]

 Score =  411 bits (1056), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 208/350 (59%), Positives = 262/350 (74%), Gaps = 12/350 (3%)

Query: 15  HRLHSLRTFINARVKWVPDPFLDDAVSKEKNLKQILSFKNQLVHSPSKSLPLSSLSLLKP 74
           HRL   RTFI A++KWV DP+LD+AVSKEKNLK +L+ K  ++ +PSK+LP +  ++ KP
Sbjct: 14  HRLLR-RTFIAAKIKWVRDPYLDEAVSKEKNLKPLLALKTLILSAPSKTLPAAVAAVNKP 72

Query: 75  HLDLPTTTALKFFQKYPSFFTLFQPCPSLPLHVKLTPQALTLHKEESAIHGLPAQRDDAV 134
              LPTT AL FF KYPS F +FQP P     V+LTPQA+ LH EE A+H  P +  +A 
Sbjct: 73  QFRLPTT-ALNFFHKYPSVFRIFQPKPLSXPQVRLTPQAIALHNEELAVHASPERLQEAA 131

Query: 135 RRLAKLLMLTNAGKLPFYVINRFKFDLGLPYNYV----CEVKD-----SVANKEVLALEL 185
            RLAKLLML  A +LP  +++ F+FDLGLP NY+    C+  +     S  + E+L LEL
Sbjct: 132 ERLAKLLMLAGARRLPLRIVDCFRFDLGLPDNYITGICCDFPEYFQISSGNDPELLDLEL 191

Query: 186 VSWRKELAVSEMERRSCGGDLLNLKKGMCLRFSMNFPRGFDLEKRVMNWVEQWQDLPYIS 245
           VSWR+ LA S +E+R+  G+  +++KGM + F M F RGFDL+K+V +W+++WQ+LPYIS
Sbjct: 192 VSWRENLACSVLEKRAXNGNS-DIRKGMRIAFPMFFSRGFDLQKKVKDWLDEWQNLPYIS 250

Query: 246 PYEDAFHFAPSGDLAEKWAVAVLHELLWLLVSKKTERDNLFCLGDYLGFGDRFKRALRHH 305
           PYE+ FH  P+ D AEKWAVAVLHELL L+VSKKTERDN+FCLG+YLGFG RFK+AL  +
Sbjct: 251 PYENGFHLNPNSDQAEKWAVAVLHELLSLMVSKKTERDNIFCLGEYLGFGSRFKKALVRY 310

Query: 306 PGIFYVSNKIRTQTVVLREAYRKDFLVERHPLMGMRHRYIHLMNKSNDRR 355
            GIFYVSNKI+T TVVLREAYRKDFL+E HPLMGMRHRYIHLMNKS   R
Sbjct: 311 AGIFYVSNKIKTHTVVLREAYRKDFLLENHPLMGMRHRYIHLMNKSEKMR 360

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297799566|ref|XP_002867667.1| hypothetical protein ARALYDRAFT_492418 [Arabidopsis lyrata subsp. lyrata] gi|297313503|gb|EFH43926.1| hypothetical protein ARALYDRAFT_492418 [Arabidopsis lyrata subsp. lyrata]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 219/374 (58%), Positives = 263/374 (70%), Gaps = 29/374 (7%)

Query: 10  AAKFPHRLHSLRTFINARVKWVPDPFLDDAVSKEKNLKQILSFKNQLVHSPSKSLPLSSL 69
             K    L   RTF+NARVKWV D +LD+AV +EKNLKQ+LS K+++V SPSKSLPLSSL
Sbjct: 5   TTKLGRALQQRRTFVNARVKWVSDYYLDEAVQREKNLKQVLSLKDRMVSSPSKSLPLSSL 64

Query: 70  SLLKPHLDLPTTTALKFFQKYPSFFTLFQPCPSLPLHVKLTPQALTLHKEESAIHGLPAQ 129
           SLLKP ++L  T A  FFQKYPS FT FQP  S PLHV+LTPQAL LHKEE  IH  P  
Sbjct: 65  SLLKPLVNLHITAA-AFFQKYPSVFTTFQPSRSHPLHVRLTPQALALHKEEETIHISPPH 123

Query: 130 RDDAVRRLAKLLMLTNAGKLPFYVINRFKFDLGLPYNY-------------VCEVKDSVA 176
           R+  V+RL K LMLT AG LP  V++RF+FDLGLP++Y             V E+KD + 
Sbjct: 124 RNVTVKRLTKFLMLTGAGSLPLNVVDRFRFDLGLPHDYITSLIGDYPDYFEVTEIKDRLT 183

Query: 177 NKEVLALELVSWRKELAVSEMERRSCGGDLLNLKKGMCLRFSMNFPRGFDLEKRVMNWVE 236
            ++ LAL + S R  L VSEMERR    D   +KKG+ +R+SMNFP+G++L+KRV NWVE
Sbjct: 184 GEKTLALTISSRRNNLPVSEMERREATFDGCRVKKGLRIRYSMNFPKGYELDKRVKNWVE 243

Query: 237 QWQDLPYISPYEDAFHFAPSGDLAEKWAVAVLHELLWLLVSKKTERDNLFCLGDYLGFGD 296
           QWQ+LPYISPYE+AFH     D AEKWAVAVLHELL LLVSKKTE DN            
Sbjct: 244 QWQNLPYISPYENAFHLGSYSDQAEKWAVAVLHELLCLLVSKKTETDN------------ 291

Query: 297 RFKRALRHHPGIFYVSNKIRTQTVVLREAYRKDFLVERHPLMGMRHRYIHLMNKSNDRRK 356
               AL HHPGIFY+S+KIRTQTVVLREAY K FL+E+HPLMGMRH+YI+LM+KS   +K
Sbjct: 292 ---NALVHHPGIFYMSHKIRTQTVVLREAYHKVFLLEKHPLMGMRHQYIYLMSKSGRGKK 348

Query: 357 PVGVVAFGSQRKTK 370
              V    S+++ K
Sbjct: 349 RDSVHGIESRKQPK 362

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357471727|ref|XP_003606148.1| hypothetical protein MTR_4g053720 [Medicago truncatula] gi|355507203|gb|AES88345.1| hypothetical protein MTR_4g053720 [Medicago truncatula]

 Score =  383 bits (983), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 196/355 (55%), Positives = 239/355 (67%), Gaps = 39/355 (10%)

Query: 10  AAKFPHRLHSLRTFINARVKWVPDPFLDDAVSKEKNLKQILSFKNQLVHSPSKSLPLSSL 69
           + K  HR   +RTF+NARVKWV D +LD AV KEKNLK ++S KN +V SPSKSL L + 
Sbjct: 4   STKLFHRFDHIRTFVNARVKWVRDDYLDTAVLKEKNLKHVISLKNHIVSSPSKSLSLYNA 63

Query: 70  SLLKPHLDLPTTTALKFFQKYPSFFTLFQPCPSLPLHVKLTPQALTLHKEESAIHGLPAQ 129
           S+LK  L+LP  T +K  +KY   F  FQP P LP  +KLT QAL LHKEE  +H     
Sbjct: 64  SMLKASLNLPMIT-IKLVEKYHHVFMQFQPSPGLPPRIKLTAQALALHKEEMEVHNSRTN 122

Query: 130 RDDAVRRLAKLLMLTNAGKLPFYVINRFKFDLGLPYNYV-------------CEVKDSVA 176
           ++DA +RLA+LLML    +LP YVI + K+D+GLP++YV             C V+D ++
Sbjct: 123 QEDAAQRLARLLMLAGMARLPIYVIEKLKWDMGLPHDYVTTLLAYYPDYFDVCVVEDPLS 182

Query: 177 NKEVLALELVSWRKELAVSEMERRSCGGDLLNLKKGMCLRFSMNFPRGFDLEKRVMNWVE 236
            KEVLALELVSWRKEL+VSE+E+R                          +EKRV  WVE
Sbjct: 183 GKEVLALELVSWRKELSVSELEKRV-------------------------MEKRVKTWVE 217

Query: 237 QWQDLPYISPYEDAFHFAPSGDLAEKWAVAVLHELLWLLVSKKTERDNLFCLGDYLGFGD 296
            WQ LPYISPYE+AFH   + D AEKW VA+LHELL LLVSKKTE +NL C G+ LG G 
Sbjct: 218 GWQTLPYISPYENAFHLDSNSDQAEKWTVAILHELLSLLVSKKTESENLICYGECLGLGS 277

Query: 297 RFKRALRHHPGIFYVSNKIRTQTVVLREAYRKDFLVERHPLMGMRHRYIHLMNKS 351
           RFK+AL HHPGIFY+SNKIRTQT VLREAYR +FLV+ HP+MG R+ YIHLM K+
Sbjct: 278 RFKKALVHHPGIFYLSNKIRTQTAVLREAYRNEFLVKNHPVMGTRYWYIHLMTKA 332

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478161|ref|XP_002265212.2| PREDICTED: uncharacterized protein LOC100257588 [Vitis vinifera]

 Score =  308 bits (790), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 166/401 (41%), Positives = 249/401 (62%), Gaps = 20/401 (4%)

Query: 14  PHRLH--SLRTFINARVKWVPDPFLDDAVSKEKNLKQILSFKNQLVHSPSKSLPLSSLSL 71
           PH  H  S R+F +A +K V D  L+ AV KE++LK +L+ KN +   PSKS+P+S +S 
Sbjct: 11  PHHYHRQSRRSFGDATIKRVQDRGLEHAVEKERSLKPMLNIKNLIKSEPSKSVPISLISQ 70

Query: 72  LKPHLDLPTTTALKFFQKYPSFFTLFQPCP-SLPLHVKLTPQALTLHKEESAIHGLPAQR 130
            K  L L  T  + F +++PS F  F P    +  HV+LTP+ L+L  EE +I      R
Sbjct: 71  NKEALGL-WTRPIDFIRRFPSIFEEFLPGGIKIHPHVRLTPEVLSLDGEELSIFQTENYR 129

Query: 131 DDAVRRLAKLLMLTNAGKLPFYVINRFKFDLGLPYNYV-------------CEVKDSVA- 176
             A  RL KLLML+   K+P  +++R K+DLGLP +YV                +D  + 
Sbjct: 130 KQAADRLLKLLMLSRINKIPLTIVDRLKWDLGLPQDYVETLVPEFPDYFQVTSAEDHFSG 189

Query: 177 NKEVLALELVSWRKELAVSEMERRSCGGDLLNLKKGMCLRFSMNFPRGFDLEKRVMNWVE 236
           ++ +  LELV W  ELA+S ME+++  G     +KGM + F ++F RGF+++K++  WV+
Sbjct: 190 SRGMRVLELVCWSNELAISVMEKKAMAGQG-GFEKGMAIAFPLHFSRGFEMDKKMKKWVD 248

Query: 237 QWQDLPYISPYEDAFHFAPSGDLAEKWAVAVLHELLWLLVSKKTERDNLFCLGDYLGFGD 296
           +WQ L YISPYE+A H  P  D ++KWAV +LHELL L V +KT+++N+ CLG+Y+G   
Sbjct: 249 EWQKLVYISPYENASHLPPKSDESDKWAVGLLHELLHLFVPRKTDKENILCLGEYMGLRS 308

Query: 297 RFKRALRHHPGIFYVSNKIRTQTVVLREAYRKDFLVERHPLMGMRHRYIHLMNKSNDRRK 356
           RFKRAL +HPGIFY+S K    TV+L+EAY++D L+E+HPLM MR++YIHLMN + +  K
Sbjct: 309 RFKRALVNHPGIFYLSTKTGMHTVLLKEAYKRDLLIEKHPLMEMRYQYIHLMNTAKEDNK 368

Query: 357 PVGVVAFGSQRKTKDVKTTLAGRMNAELEDIVLDEAVKIEI 397
           P+       +++ K+  +  +G  + ++ED    E  + E+
Sbjct: 369 PINAPGTSPKKEQKNA-SDASGEKSEQVEDAESGEEYEGEL 408

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	397
TAIR|locus:2012981	470	AT1G71850 "AT1G71850" [Arabido	0.863	0.729	0.369	5.1e-58
TAIR|locus:2064940	387	WTF9 "AT2G39120" [Arabidopsis	0.821	0.842	0.324	8.4e-42
TAIR|locus:4515103321	528	WTF1 "what's this factor?" [Ar	0.780	0.587	0.310	1.5e-27
TAIR|locus:2042561	415	AT2G31290 [Arabidopsis thalian	0.755	0.722	0.302	8.4e-26
TAIR|locus:504955534	409	RPD1 "ROOT PRIMORDIUM DEFECTIV	0.659	0.640	0.307	6.3e-22
TAIR|locus:2009230	390	AT1G06440 [Arabidopsis thalian	0.647	0.658	0.302	4e-17
TAIR|locus:2166305	494	emb1692 "embryo defective 1692	0.889	0.714	0.266	4.9e-16
TAIR|locus:2207380	413	AT1G79120 [Arabidopsis thalian	0.518	0.498	0.324	1.6e-12
TAIR|locus:2138738	395	AT4G08940 [Arabidopsis thalian	0.619	0.622	0.242	5e-09

TAIR|locus:2012981 AT1G71850 "AT1G71850" [Arabidopsis thaliana (taxid:3702)]

 Score = 596 (214.9 bits), Expect = 5.1e-58, P = 5.1e-58
 Identities = 131/355 (36%), Positives = 196/355 (55%)

Query:    15 HRLHSLRTFINARVKWVPDPFLDDAVSKEKNLKQILSFKNQLVXXXXXXXXXXXXXXXXX 74
             HR  +  + +    K+V D  LD AV +EKNL+ +LS K+ +                  
Sbjct:    16 HRTFADTSAVEDTYKFVRDRGLDHAVEREKNLRPLLSIKDLIRSEPAKSVPISVITSQKD 75

Query:    75 XXDLPTTTALKFFQKYPSFFTLFQPCP-SLPLHVKLTPQALTLHKEESAIHGLPAQRDDA 133
                +P    ++F + +PS F  F P    +  H+ LTP+ L    +E  ++G    +   
Sbjct:    76 SLRVPLRP-IEFIRSFPSVFQEFLPGGIGIHPHISLTPEILNHDADEQLVYGSETYKQGL 134

Query:   134 VRRLAKLLMLTNAGKLPFYVINRFKFDLGLPYNYV----CEVKD--SVANKEVLA----L 183
               RL KLLM+    K+P  +++  K+DLGLP +YV     E  D   V   ++      L
Sbjct:   135 ADRLLKLLMINRINKIPLEILDLLKWDLGLPKDYVETMVPEFPDYFRVIKSKLRGCSGEL 194

Query:   184 ELVSWRKELAVSEMERRSCGGDLLNLKKGMCLRFSMNFPRGFDLEKRVMNWVEQWQDLPY 243
             ELV W  E AVS +E+++         KG  + F M F  GF ++K++  W++ WQ LPY
Sbjct:   195 ELVCWSNEHAVSVLEKKARTLRKGEYTKGSAIAFPMKFSNGFVVDKKMKKWIDDWQKLPY 254

Query:   244 ISPYEDAFHFAPSGDLAEKWAVAVLHELLWLLVSKKTERDNLFCLGDYLGFGDRFKRALR 303
             ISPYE+A H + + D ++KWA AVLHE++ L VSKK E+D +  LG+++G   RFKR L 
Sbjct:   255 ISPYENALHLSATSDESDKWAAAVLHEIMNLFVSKKVEKDAILHLGEFMGLRSRFKRVLH 314

Query:   304 HHPGIFYVSNKIRTQTVVLREAYRKDFLVERHPLMGMRHRYIHLMNKSNDRRKPV 358
             +HPGIFY+S+K+RT TVVLR+ Y++  L+E + L+  R+RY+ LMN      K V
Sbjct:   315 NHPGIFYLSSKLRTHTVVLRDGYKRGMLIESNELVTSRNRYMKLMNTVKKDNKAV 369

GO:0005739 "mitochondrion" evidence=IDA

GO:0009220 "pyrimidine ribonucleotide biosynthetic process" evidence=RCA

TAIR|locus:2064940 WTF9 "AT2G39120" [Arabidopsis thaliana (taxid:3702)]

 Score = 443 (161.0 bits), Expect = 8.4e-42, P = 8.4e-42
 Identities = 111/342 (32%), Positives = 172/342 (50%)

Query:    21 RTFINARVKWVPDPFLDDA--VSKEKNLKQILSFKNQLVXXXXXXXXXXXXXXXXXXXDL 78
             RT+++  +KW  DP+ D+   + +   LK ++S KN +V                   D+
Sbjct:    22 RTYVDVYMKWKRDPYFDNIEHILRSSQLKSVVSLKNCIVQEPNRCIPISAISKKTRQFDV 81

Query:    79 PTTTALKFFQKYPSFFTLFQ-PCPSLPLHVKLTPQALTLHKEESAIHGLPAQRDDAVRRL 137
              T  A  F +K+PS F  F  P  +LP   +LTP+A  L ++E  ++   A  DD   RL
Sbjct:    82 STKIA-HFLRKFPSIFEEFVGPEYNLPWF-RLTPEATELDRQERVVYQTSA--DDLRDRL 137

Query:   138 AKLLMLTNAGKLPFYVINRFKFDLGLPYNYVCEVKDSVANKEVLALELVSWRKELAVS-- 195
              KL++++    LP  ++   K+ LGLP +Y+ +  D   +     +++    K LAV   
Sbjct:   138 KKLILMSKDNVLPLSIVQGMKWYLGLPDDYL-QFPDMNLDSSFRFVDMEDGVKGLAVDYN 196

Query:   196 --EMERRSCGGDLLNLKKGMCLRFSMNFP----RGFDLEKRVMNWVEQWQDLPYISPYED 249
               +        + +  ++G      + FP    +G  L  ++ +W+ ++Q LPY+SPY+D
Sbjct:   197 GGDKVLSVLQKNAMKKRRGEVSLEEIEFPLFPSKGCRLRVKIEDWLMEFQKLPYVSPYDD 256

Query:   250 AFHFAPSGDLAEKWAVAVLHELLWLLVSKKTERDNLFCLGDYLGFGDRFKRALRHHPGIF 309
                  PS D+AEK  V  LHELL L V    ER  L CL  + G   +  +A   HP IF
Sbjct:   257 YSCLDPSSDIAEKRVVGFLHELLCLFVEHSAERKKLLCLKKHFGLPQKVHKAFERHPQIF 316

Query:   310 YVSNKIRTQTVVLREAYRKDFLVERHPLMGMRHRYIHLMNKS 351
             Y+S K +T T +LRE YR    VE HP++G+R +YI LM  S
Sbjct:   317 YLSMKNKTCTAILREPYRDKASVETHPVLGVRKKYIQLMKNS 358

GO:0005739 "mitochondrion" evidence=IDA

GO:0000373 "Group II intron splicing" evidence=IMP

GO:0003723 "RNA binding" evidence=IDA

GO:0017004 "cytochrome complex assembly" evidence=IMP

TAIR|locus:4515103321 WTF1 "what's this factor?" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 1.5e-27, P = 1.5e-27
 Identities = 102/329 (31%), Positives = 151/329 (45%)

Query:    24 INARVKWVPDPFLDDAVSKEKNLKQILSFKNQLVXXXXXXXXXXXXXXXXXXXDLPTTTA 83
             + A VK   +   D  V ++K LK +L+ +  LV                    L     
Sbjct:    72 VRAAVKRRKELTFDSVVQRDKKLKLVLNIRKILVSQPDRMMSLRGLGKYRRDLGLKKRRR 131

Query:    84 -LKFFQKYPSFFTLFQPCPSLPLHVKLTPQALTLHKEESAIHGLPAQRDDAVRRLAKLLM 142
              +   +KYP  F + +   +  L  K+T +A  L+ +E  I       D  V +L KL+M
Sbjct:   132 FIALLRKYPGVFEIVEE-GAYSLRFKMTSEAERLYLDEMRIRN--ELEDVLVVKLRKLVM 188

Query:   143 LTNAGKLPFYVINRFKFDLGLPYNY---VCEVKDS----VANKEVLALELVSWRKELAVS 195
             ++   ++    I+  K DLGLP  +   +C+        V      ALEL  W  ELAVS
Sbjct:   189 MSIDKRILLEKISHLKTDLGLPLEFRDTICQRYPQYFRVVPTPRGPALELTHWDPELAVS 248

Query:   196 -----EMERRSCGGDLLNLKKGMCLRFS-MNFPRGFDLEKRVMNWVEQWQDLPYISPYED 249
                  E + R+   +  NL      +F+ +  PRG +L K     + Q++D+ YISPY+D
Sbjct:   249 AAELSEDDNRTRESEERNLIIDRPPKFNRVKLPRGLNLSKSETRKISQFRDMQYISPYKD 308

Query:   250 AFHFAPSGDLA-EKWAVAVLHELLWLLVSKKTERDNLFCLGDYLGFGDRFKRALRHHPGI 308
               H   SG L  EK A  V+HELL L   K+T  D+L    +   F  + +  L  HP +
Sbjct:   309 FSHLR-SGTLEKEKHACGVIHELLSLTTEKRTLVDHLTHFREEFRFSQQLRGMLIRHPDL 367

Query:   309 FYVSNKIRTQTVVLREAYRKDFLVERHPL 337
             FYVS K    +V LREAYR   L+++ PL
Sbjct:   368 FYVSLKGERDSVFLREAYRNSELIDKDPL 396

GO:0005576 "extracellular region" evidence=ISM

TAIR|locus:2042561 AT2G31290 [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
 Identities = 100/331 (30%), Positives = 150/331 (45%)

Query:    33 DPFLDDAVSKEKNLKQILSFKNQLVXXXXXXXXXXXXXXXXXXXDLPTTTALKFFQKYPS 92
             DP L+ A+S+ K        KN ++                   DL    AL + +KYP 
Sbjct:    31 DPDLESALSRNKRWIVNSRLKNIILRCPNQVASIKFLQKKFKTLDLQGK-ALNWLKKYPC 89

Query:    93 FFTLFQPCPSLPLHVKLTPQALTLHKEESAIHGLPAQRDDAVRRLAKLLMLTNAGKLPFY 152
              F ++    +   + +LT   +TL +EE  +     Q      RLAKLLML+   +L   
Sbjct:    90 CFHVY--LENDEYYCRLTKPMMTLVEEEELVKD--TQEPVLADRLAKLLMLSVNQRLNVV 145

Query:   153 VINRFKFDLGLPYNYVCEV--KDS----VAN----KEVLALELVSWRKELAVSEMER--R 200
              +N FK   G P +YV  +  K S    + N    K  + +EL+ W+ ELAVS +E   +
Sbjct:   146 KLNEFKRSFGFPDDYVIRIVPKYSDVFRLVNYSGRKSSMEIELLLWKPELAVSAVEAAAK 205

Query:   201 SCGGDLLNLKKGMCLRFSMNFPRGFDLE-KRVMNWVEQWQDLPYISPYEDAFHFAPSGDL 259
              CG +           FS + P  +    +R M    ++   PYISPYED          
Sbjct:   206 KCGSEP---------SFSCSLPSTWTKPWERFM----EFNAFPYISPYEDHGDLVEGSKE 252

Query:   260 AEKWAVAVLHELLWLLVSKKTERDNLFCLGDYLGFGDRFKRALRHHPGIFYVSNKIRTQT 319
             +EK +V ++HELL L + KK     L       G  ++    L  HPGIFYV NK +  T
Sbjct:   253 SEKRSVGLVHELLSLTLWKKLSIVKLSHFKREFGLPEKLNGMLLKHPGIFYVGNKYQVHT 312

Query:   320 VVLREAYRKDFLVERHPLMGMRHRYIHLMNK 350
             V+LRE Y    L+ + PL+ ++ ++  LM +
Sbjct:   313 VILREGYNGSELIHKDPLVVVKDKFGELMQQ 343

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:504955534 RPD1 "ROOT PRIMORDIUM DEFECTIVE 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 265 (98.3 bits), Expect = 6.3e-22, P = 6.3e-22
 Identities = 91/296 (30%), Positives = 145/296 (48%)

Query:    86 FFQKYPSFFTLFQPCPSLPLHVKLTPQALTL--HKEESAIHGLPAQRDDAVRRLAKLLML 143
             F  K+P  F +++      L+ +LT +AL    H+ E+ +  +P    DAV RL KL+M+
Sbjct:   104 FLLKFPHVFEIYEHPVQRILYCRLTRKALDQIRHEHEAVLDQIP----DAVTRLRKLVMM 159

Query:   144 TNAGKLPFYVINRFKFDLGLP--YNYVCEVKDS-----VANKEVLA--LELVSWRKELAV 194
             +N G++    +   + + GLP  + Y   +K       +  +E     +E+V     L++
Sbjct:   160 SNTGRIRLEHVRIARTEFGLPEDFEYSVILKHPQFFRLIDGEETRDKYIEIVEKDPNLSI 219

Query:   195 SEMERRSCGGDLLNLKKGMC---LRFS--MNFPRGFDLEK--RVMNWVEQWQDLPYISPY 247
               +ER     ++    KG+    +RFS  +NFP GF + K  R+  W  +WQ LPY SPY
Sbjct:   220 CAIERVR---EIEYRTKGIDAEDVRFSFVVNFPPGFKIGKYFRIAVW--KWQRLPYWSPY 274

Query:   248 EDAFHF----APSGDLAEKWAVAVLHELLWLLVSKKTERDNLFCLGDYLGFGDRFKRALR 303
             ED   +      + +  EK +VA +HELL L V KK   + +    + +    + K  L 
Sbjct:   275 EDISGYDLRSMEAQNRLEKRSVACIHELLSLTVEKKITLERIAHFRNVMNLPKKLKEFLL 334

Query:   304 HHPGIFYVS---NKIRTQTVVLREAYRKDFLVERHPLMGMRHRYIHLMNKSNDRRK 356
              H GIFY+S   N  +  TV LRE Y++  LVE + +   R R   L+  S  + K
Sbjct:   335 QHQGIFYISTRGNYGKLHTVFLREGYKRGELVEPNDVYLARRRLAELVLMSPRKAK 390

GO:0009507 "chloroplast" evidence=ISM

GO:0008285 "negative regulation of cell proliferation" evidence=IMP

GO:0010102 "lateral root morphogenesis" evidence=IMP

TAIR|locus:2009230 AT1G06440 [Arabidopsis thaliana (taxid:3702)]

 Score = 230 (86.0 bits), Expect = 4.0e-17, P = 4.0e-17
 Identities = 88/291 (30%), Positives = 130/291 (44%)

Query:    83 ALKFFQKYPSFF-TLFQPCPSLPLHVKLTPQALTLHKEES-AIHG-LPAQRDDAVRRLA- 138
             A  F +KYP  F  L+ P  + P   +LT  A+ + ++E+ AI   L    D  VR L+ 
Sbjct:    89 AASFLRKYPHIFHVLYDPVKAEPF-CRLTDVAMEISRQEALAITATLSLVVDRLVRLLSM 147

Query:   139 ---KLLMLTNAGK------LP--FY--VINR----FKFDLGLPYN-YVCEVKDSVANKEV 180
                K + L    K      LP  F   VI++    FK   G   N ++ E+      +  
Sbjct:   148 SISKSIPLRAVFKVWRELGLPDDFEDSVISKNPHLFKLSDGHESNTHILELVQEEEKRLE 207

Query:   181 LALELVSWRKELAVSEMERRSCGGDLLNLKKGMCLRFSMNFPRGFDLEKRVMNWVEQWQD 240
                 +  WR    V E  +  C  D   ++      F  ++P G  L K     V++WQ 
Sbjct:   208 FEAAVEKWR----VVECSKEDCSVDRTEIQ----FSFKHSYPPGMRLSKTFKAKVKEWQR 259

Query:   241 LPYISPYEDAF--HFAPSGDLA-EKWAVAVLHELLWLLVSKKTERDNLFCLGDYLGFGDR 297
             LPY+ PYED      + SG +  EK AVA+ HE L L V K  E + +       G    
Sbjct:   260 LPYVGPYEDMVGKKKSRSGVMGIEKRAVAIAHEFLNLTVEKMVEVEKISHFRKCFGIDLN 319

Query:   298 FKRALRHHPGIFYVSNKIRTQTVVLREAYRKDFLVERHPLMGMRHRYIHLM 348
              +     HPG+FYVS K +  TV LREAY +  L++ +P+   R + + L+
Sbjct:   320 IRDLFLDHPGMFYVSTKGKRHTVFLREAYERGRLIDPNPVYDARRKLLDLV 370

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2166305 emb1692 "embryo defective 1692" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 4.9e-16, P = 4.9e-16
 Identities = 103/386 (26%), Positives = 173/386 (44%)

Query:    16 RLHSLRTFINARV-KWVPDPFLDDAVSKEKNLKQILSFKNQLVXXXXXXXXXXXXXXXXX 74
             +L SL   I+    K V  P LD  V K+  ++ +      L+                 
Sbjct:    44 KLGSLSLNISCSAHKIVRSPSLDRHVVKQNRVRFVQKLNTLLLSKPKHYIPIEILYKCRS 103

Query:    75 XXDLPTTTA-LKFFQKYPSFFTLFQ-PCPSLPLH---------VKLTPQALTLHKEESAI 123
                +    A L   ++YP+ F LF  P P LP++         V+LT  A +L  +E  +
Sbjct:   104 YLCIENPLAILSMIRRYPTIFELFTTPTPHLPMNATKPLSQLCVRLTSAASSLAMQELNL 163

Query:   124 HGLPAQRDDAVRRLAKLLMLTNAGKLPFYVINRFKFDLGLPYNY---VC-EVKDSVANKE 179
                 +  D    +L KLLML++  +L    +     D G P N+   +C +  D     +
Sbjct:   164 KSEIS--DKLATKLQKLLMLSSHRRLLLSKLVHIAPDFGFPPNFRSRLCNDYPDKFKTVD 221

Query:   180 VL---ALELVSWRKELAVSEMERRSCGGDLLNLKKGMCLRFS-MNFPRGFDLEKRVMNWV 235
                  ALELVS   ELA ++M        L+  +    L+F  +N  RG +L++R   ++
Sbjct:   222 TSYGRALELVSSDPELA-NQMPSPEVDRGLIVDRP---LKFKRLNLRRGLNLKRRHQGFL 277

Query:   236 EQWQDLPYISPYEDAFHFAPSGDL-AEKWAVAVLHELLWLLVSKKTERDNLFCLGDYLGF 294
              ++++ P + PY+ +  +  S  + AEK A AV+ E+L L V K+T  D+L         
Sbjct:   278 IKFRESPDVCPYKMSSDYLASESIEAEKRACAVVREVLGLTVEKRTLIDHLTHFRKEFSL 337

Query:   295 GDRFKRALRHHPGIFYVSNKIRTQTVVLREAYRKDF-LVERHPLMGMRHRYIHLMNKSN- 352
              ++ +  +  HP +FYVS K    +V L EAY  +  L+++   + +R R I L+ +   
Sbjct:   338 PNKLRDLIVRHPELFYVSIKGMRDSVFLVEAYNDNGDLLDKDERLVIRERLIDLIQEGKR 397

Query:   353 ---DRRKPVGVVAFGS-QRKTKDVKT 374
                +RR+    +   S + K KD +T
Sbjct:   398 IRRERRRKGATLGDKSVEEKRKDDET 423

GO:0005634 "nucleus" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

TAIR|locus:2207380 AT1G79120 [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 1.6e-12, P = 1.6e-12
 Identities = 74/228 (32%), Positives = 104/228 (45%)

Query:   137 LAKLLMLTNAGKLPFYVINRFKFDLGLPYNYVCEVKDSVANKEVLALELVSWRKELAVSE 196
             L K+  + +A  LP      FK  L   Y     +K  V N +V  L L +W   LA++ 
Sbjct:   178 LEKVEFIQSAMGLP----QDFKSTLIPKYTEFFSLK--VINGKV-NLVLENWDSSLAITA 230

Query:   197 MERRSC--G-----GDLLNL---KKGMCL---RFSMNFPRGFDLEKRVMNWVEQWQDLPY 243
              E R    G     GD   +   K G  L    F ++FP GF      +   E+WQ + +
Sbjct:   231 REDRLSREGFSESVGDRKRVRITKDGNFLGRNAFKISFPPGFRPNASYLEEFEKWQKMEF 290

Query:   244 ISPYEDAFHFAPSGDLAEKWAVAVLHELLWLLVSKKTERDNLFCL-GDYLGFGDRFKRAL 302
              SPY +A  F  +   A K  VAVLHELL L + K+     L     +YL    R    L
Sbjct:   291 PSPYLNARRFDAADPKARKRVVAVLHELLSLTMEKRVTCAQLDAFHSEYL-LPSRLILCL 349

Query:   303 RHHPGIFYVSNKIRTQTVVLREAYRKDFLVERHPLMGMRHRYIHLMNK 350
               H GIFY++NK    TV L++AY    L+E+ PL+    R++ L  +
Sbjct:   350 IKHQGIFYITNKGARGTVFLKDAYAGSNLIEKCPLLLFHDRFVALCGR 397

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2138738 AT4G08940 [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 5.0e-09, P = 5.0e-09
 Identities = 63/260 (24%), Positives = 110/260 (42%)

Query:    85 KFFQKYPSFFTLFQPCPSLPLHVKLTPQALTLHKEESAIHGLPAQRDDAVRRLAKLLMLT 144
             KF  K+P  F  ++      + +  T     L  EE  +  + +   D V  + KLLM+T
Sbjct:   121 KFIPKHPLIFQTYRHSDG-KIWLGFTEFMEDLLDEEKGL--MESMELDRVNCVRKLLMMT 177

Query:   145 NAGKLPFYVINRFKFDLGLPYNY---VCEVKDS----VANKEVLALELVSWRKELAVSEM 197
                ++    I+  +   G+P ++   V +  D             LELV+W   LAVSE+
Sbjct:   178 KDKRILLSKIHHTRLLFGIPEDFRDRVAKYPDYFRVVTGGDGNRVLELVNWDTNLAVSEL 237

Query:   198 ERRSCGGDLLNLKKGMCLRFSMNFPRGFDLEKRVMNWVEQWQDLPYISPYEDAFHFAPSG 257
             ER      +   K     +F +   +  +LE++    +      P +SPY D +      
Sbjct:   238 ERLFM---IDEDKAKRVFKFPVKHGKELELEEKDTRKLNLLNTFPLVSPYSDGWKLDVWS 294

Query:   258 DLAEKWAVAVLHELLWLLVSKKTERDNLFCLGDYLGFGDRFKRALRHHPGIFYVSNKIRT 317
               AEK+ V ++HE L L + K+    ++    D      +  + L+     FY++     
Sbjct:   295 LEAEKYRVGIVHEFLNLTLEKRASIHHIVEFKDEFSLTRQTYQMLKKQSMSFYLAGTEMN 354

Query:   318 QTVVLREAYRKD-FLVERHP 336
              TV L++AY ++  LV + P
Sbjct:   355 WTVFLKDAYDENGVLVSKDP 374


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.139   0.427    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      397       367   0.00084  117 3  11 22  0.47    33
                                                     34  0.45    37


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  9
  No. of states in DFA:  618 (66 KB)
  Total size of DFA:  256 KB (2136 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  30.53u 0.13s 30.66t   Elapsed:  00:00:01
  Total cpu time:  30.53u 0.13s 30.66t   Elapsed:  00:00:01
  Start:  Tue May 21 03:20:50 2013   End:  Tue May 21 03:20:51 2013

GO:0009507 "chloroplast" evidence=ISM

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0015824 "proline transport" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.19	LOW CONFIDENCE prediction!
3rd Layer	3.4.19.12	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	397
pfam11955	332	pfam11955, PORR, Plant organelle RNA recognition d	1e-115

>gnl|CDD|221338 pfam11955, PORR, Plant organelle RNA recognition domain

 Score =  339 bits (871), Expect = e-115
 Identities = 141/332 (42%), Positives = 182/332 (54%), Gaps = 16/332 (4%)

Query: 30  WVPDPFLDDAVSKEKNLKQILSFKNQLVHSPSKSLPLSSLSLLKPHLDLPTTTALKFFQK 89
           WV DP LD AV +EK L+ +L  K+ L+  P  SLPL  LS L+  L LP   AL F +K
Sbjct: 1   WVRDPALDKAVEREKRLRLVLRLKDLLLSQPDHSLPLRDLSKLRRQLGLPRG-ALAFLRK 59

Query: 90  YPSFFTLFQPCPSLPLHVKLTPQALTLHKEESAIHGLPAQRDDAVRRLAKLLMLTNAGKL 149
           YPS F LF+      L V+LTP+A  L  EE+ +    +   D V RL KLLM++   +L
Sbjct: 60  YPSIFELFRHPSDSVLCVRLTPKAEDLLAEEARLLE--SSEPDLVDRLRKLLMMSKDRRL 117

Query: 150 PFYVINRFKFDLGLPYNYVC----------EVKDSVANKEVLALELVSWRKELAVSEMER 199
           P   +   + DLGLP ++             + D         LELVSW  ELAVS +E+
Sbjct: 118 PLEKLAHLRRDLGLPDDFRDSLVPKYPDYFRLVDEDGGDG---LELVSWDPELAVSALEK 174

Query: 200 RSCGGDLLNLKKGMCLRFSMNFPRGFDLEKRVMNWVEQWQDLPYISPYEDAFHFAPSGDL 259
           R    D    +      F + FP GF L K+    +E+WQ LPYISPYEDA H  P  D 
Sbjct: 175 RREIEDRGGDRVDRRFAFPVKFPPGFKLRKKFREKLEEWQKLPYISPYEDASHLDPGSDE 234

Query: 260 AEKWAVAVLHELLWLLVSKKTERDNLFCLGDYLGFGDRFKRALRHHPGIFYVSNKIRTQT 319
           AEK AVAVLHELL L V K+TE D+L       G   + ++ L  HPGIFY+S K +  T
Sbjct: 235 AEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLPQKLRKVLLRHPGIFYLSTKGKRHT 294

Query: 320 VVLREAYRKDFLVERHPLMGMRHRYIHLMNKS 351
           V LREAY +  LVE+ PL+  R + + LM + 
Sbjct: 295 VFLREAYDRGELVEKDPLVLAREKLLELMLEG 326

This family, which was previously known as DUF860, has been shown to be a component of group II intron ribonucleoprotein particles in maize chloroplasts. The domain is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. All of the members are predicted to localise to mitochondria or chloroplasts. It seems likely that most PORR proteins function in organellar RNA metabolism. Length = 332

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	397
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	100.0
PF11955	335	PORR: Plant organelle RNA recognition domain; Inte	97.79

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=100.00  E-value=2.9e-115  Score=867.15  Aligned_cols=323  Identities=43%  Similarity=0.699  Sum_probs=311.0

Q ss_pred             ccCCchhHHHHHhhhchhHHHHHHHHHhcCCCCceecccccccCCCCCCCCcchhhHHhhCCcceEeccCCCCCCceeec
Q 015985           30 WVPDPFLDDAVSKEKNLKQILSFKNQLVHSPSKSLPLSSLSLLKPHLDLPTTTALKFFQKYPSFFTLFQPCPSLPLHVKL  109 (397)
Q Consensus        30 w~rD~~LD~~v~r~k~lr~v~~lk~li~s~P~~~ipl~~L~k~~~~Lgl~~~~~~~FlrkyP~iF~~~~~~~~~~~~~rL  109 (397)
                      |+||++||++|+++|+++++++|+++|+++|+++||+++|++++++||++++++++||+|||+||++|.++..+++||+|
T Consensus         1 w~rd~~lD~~i~~~k~l~~v~~l~~~i~~~p~~~~pl~~l~k~~~~L~l~~~~~~~flrkyP~iF~~~~~~~~~~~~~~L   80 (335)
T PF11955_consen    1 WVRDPYLDKVIEREKRLRFVLRLKDLILSQPSHSLPLRDLSKLRRQLGLKPRKVSRFLRKYPSIFEVFQHPSRSVPWFRL   80 (335)
T ss_pred             CCCchhHHHHHHhhhhHHHHHHHHHHHHcCCCCcccHHHHHHHHHhcCCCcccHHHHHHhCCceEEEeccCCCCCceEEe
Confidence            99999999999999999999999999999999999999999999999997689999999999999999988889999999


Q ss_pred             CHHHHHHHHHHHHHhCCCCChHHHHHHHHHHhhccCCCccchhHHHHhHhhcCCCCCc----ccccCCccCc----Cccc
Q 015985          110 TPQALTLHKEESAIHGLPAQRDDAVRRLAKLLMLTNAGKLPFYVINRFKFDLGLPYNY----VCEVKDSVAN----KEVL  181 (397)
Q Consensus       110 T~~a~~L~~eE~~v~~~~~~e~~~v~rLrKLLMMS~~~rLpL~ki~~lk~dLGLP~DF----v~~~pd~~~g----~~~~  181 (397)
                      |++|++|++||++++++  +++++|++|+||||||.+++|||++|++++||||||+||    +.++||+|.-    ++..
T Consensus        81 T~~a~~L~~eE~~~~~~--~e~~~v~rL~KLLMMS~~~rlpL~ki~~l~~dLGLP~Df~~~lv~~yP~~Frvv~~~~~~~  158 (335)
T PF11955_consen   81 TPEAEDLLREERRVREE--MEPDLVERLRKLLMMSKDRRLPLSKIAHLRRDLGLPDDFRDSLVPKYPDYFRVVDLEDGGR  158 (335)
T ss_pred             CHHHHHHHHHHHHHHHh--ChHHHHHHHHHHhccCCCCcccHHHHHHHHHHcCCChhhccchhhhCCCCcEEeecCCCCC
Confidence            99999999999999999  999999999999999999999999999999999999999    7789999864    3468


Q ss_pred             cEEeeccCCCCcchHHhhhhccC--CccccCCCcccceeeeCCCCCccchHHHHHHHhhhcCCCCCCCCCCCCCCCCCch
Q 015985          182 ALELVSWRKELAVSEMERRSCGG--DLLNLKKGMCLRFSMNFPRGFDLEKRVMNWVEQWQDLPYISPYEDAFHFAPSGDL  259 (397)
Q Consensus       182 ~LELv~Wd~~LAVS~lEk~~~~~--~~~~~~~~~~~~Fpv~fp~Gf~l~k~~~~~l~~fQ~LPYiSPYed~~~l~~~S~e  259 (397)
                      +||||+|||+||||++|++++.+  +....+.+++++|||+||+||++++++++|+++||+|||+|||+|+++++++|++
T Consensus       159 ~LeLv~Wd~~LAvs~~E~~~~~~~~~~~~~~~~~~~~Fp~~fp~G~~l~k~~~~~l~~fQ~lPy~SPYed~~~l~~~s~~  238 (335)
T PF11955_consen  159 YLELVSWDPELAVSALEKRAEKEYREKREDGFDRPLAFPVSFPKGFRLKKKFREWLEEFQKLPYISPYEDASHLDPGSDE  238 (335)
T ss_pred             EEEEeecCCccCcCccchhhhhccccccccccCCceeeeecCCCCccccHHHHHHHHHHhcCCCCCCCCCccCCCCCChH
Confidence            99999999999999999999965  3344567789999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHhhhcchhhhccchhhhhhhhcCCcHHHHHHHhhCCCceEEEeeCCceeEEeeccccCCCccccCchhh
Q 015985          260 AEKWAVAVLHELLWLLVSKKTERDNLFCLGDYLGFGDRFKRALRHHPGIFYVSNKIRTQTVVLREAYRKDFLVERHPLMG  339 (397)
Q Consensus       260 ~EKRaVaVlHELLSLTveKr~~v~~L~~Fr~ef~Lp~k~~~~l~rHPgIFYvS~Kg~~~TVfLREAY~~g~Liek~PL~~  339 (397)
                      +|||||||+||||||||||||++++|+|||+|||||++|+++|+|||||||||+||+|+||||||||++|+|||||||+.
T Consensus       239 ~EKRaVaVlHElLSLTveKr~~~~~L~~fr~ef~lp~k~~~~l~rHPgIFYvS~kg~~~TVfLrEAY~~~~Liek~Pl~~  318 (335)
T PF11955_consen  239 AEKRAVAVLHELLSLTVEKRTEVDHLTHFRKEFGLPQKFRRLLLRHPGIFYVSLKGKRHTVFLREAYDGGELIEKHPLVV  318 (335)
T ss_pred             HHhHHHHHHHHHHHhhhhhhccHHHHHHHHHHhCCcHHHHHHHHhCCCeEEEeccCCceEEEEeeccCCCCCCCCCchHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcccc
Q 015985          340 MRHRYIHLMNKSNDR  354 (397)
Q Consensus       340 ~R~k~~~Lm~~g~~~  354 (397)
                      +|+||++||+.|...
T Consensus       319 ~r~k~~~Lm~~~~~~  333 (335)
T PF11955_consen  319 IREKFLELMQEGRRK  333 (335)
T ss_pred             HHHHHHHHHhhcccc
Confidence            999999999999874

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

>PF11955 PORR: Plant organelle RNA recognition domain; InterPro: IPR021099 The plant organelle RNA recognition (PORR) domain, previously known as DUF860, is a component of group II intron ribonucleoprotein particles in maize chloroplasts

Probab=97.79  E-value=1.4e-05  Score=80.91  Aligned_cols=130  Identities=22%  Similarity=0.322  Sum_probs=96.1

Q ss_pred             hchhHHHHHHHHHhcCCCCceecccccccCCCCCCCCcc-hhhHHhhCCcceEeccCCCCCCceeecCH-----------
Q 015985           44 KNLKQILSFKNQLVHSPSKSLPLSSLSLLKPHLDLPTTT-ALKFFQKYPSFFTLFQPCPSLPLHVKLTP-----------  111 (397)
Q Consensus        44 k~lr~v~~lk~li~s~P~~~ipl~~L~k~~~~Lgl~~~~-~~~FlrkyP~iF~~~~~~~~~~~~~rLT~-----------  111 (397)
                      .....|.+|+.+|-=+.++.||++.+...+.+|||| .+ ..+++.+||..|.+... ..+..++.|..           
T Consensus        98 ~e~~~v~rL~KLLMMS~~~rlpL~ki~~l~~dLGLP-~Df~~~lv~~yP~~Frvv~~-~~~~~~LeLv~Wd~~LAvs~~E  175 (335)
T PF11955_consen   98 MEPDLVERLRKLLMMSKDRRLPLSKIAHLRRDLGLP-DDFRDSLVPKYPDYFRVVDL-EDGGRYLELVSWDPELAVSALE  175 (335)
T ss_pred             ChHHHHHHHHHHhccCCCCcccHHHHHHHHHHcCCC-hhhccchhhhCCCCcEEeec-CCCCCEEEEeecCCccCcCccc
Confidence            346689999999999999999999999999999999 55 58899999999999652 22223333332           


Q ss_pred             ---------------------------------HHHHHHHHHHHH-------------hCCCCChHHHHHHHHHHhhccC
Q 015985          112 ---------------------------------QALTLHKEESAI-------------HGLPAQRDDAVRRLAKLLMLTN  145 (397)
Q Consensus       112 ---------------------------------~a~~L~~eE~~v-------------~~~~~~e~~~v~rLrKLLMMS~  145 (397)
                                                       ...+-+.+=+++             -.+...|--+|.-+.=||-|+.
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~Fp~~fp~G~~l~k~~~~~l~~fQ~lPy~SPYed~~~l~~~s~~~EKRaVaVlHElLSLTv  255 (335)
T PF11955_consen  176 KRAEKEYREKREDGFDRPLAFPVSFPKGFRLKKKFREWLEEFQKLPYISPYEDASHLDPGSDEAEKRAVAVLHELLSLTV  255 (335)
T ss_pred             hhhhhccccccccccCCceeeeecCCCCccccHHHHHHHHHHhcCCCCCCCCCccCCCCCChHHHhHHHHHHHHHHHhhh
Confidence                                             111111110000             0111234567889999999999


Q ss_pred             CCccchhHHHHhHhhcCCCCCc---ccccCCcc
Q 015985          146 AGKLPFYVINRFKFDLGLPYNY---VCEVKDSV  175 (397)
Q Consensus       146 ~~rLpL~ki~~lk~dLGLP~DF---v~~~pd~~  175 (397)
                      .+++.+++|.|++++||||..|   +.++|.-|
T Consensus       256 eKr~~~~~L~~fr~ef~lp~k~~~~l~rHPgIF  288 (335)
T PF11955_consen  256 EKRTEVDHLTHFRKEFGLPQKFRRLLLRHPGIF  288 (335)
T ss_pred             hhhccHHHHHHHHHHhCCcHHHHHHHHhCCCeE
Confidence            9999999999999999999999   77888754

It is required for the splicing of the introns with which it associates, and promotes splicing in the context of a heterodimer with the RNase III-domain protein RNC1. Proteins containing this domain are predicted to localise to mitochondria or chloroplasts []. It seems likely that most PORR proteins function in organellar RNA metabolism [].

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	397
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-06
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 7e-06
 Identities = 71/453 (15%), Positives = 128/453 (28%), Gaps = 119/453 (26%)

Query: 21  RTFINARVKW--VPDPFLDDAVSKEK---NLKQIL----SFKNQLVHSPS---KS-LPLS 67
           R +I  R +       F    VS+ +    L+Q L      KN L+       K+ + L 
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALD 169

Query: 68  SLSLLKPHLDLPTTTALKF------FQKYPSFFTLFQPCPSLPLHVKLTPQALTLHKEES 121
                           + F       +   S  T+ +      L  ++ P   +     S
Sbjct: 170 VCL------SYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK--LLYQIDPNWTSRSDHSS 221

Query: 122 AIHGLPAQRDDAVRRLAK-------LLMLTNAGKLPFYVINR--FK-FDLGLPYNYVC-- 169
            I          +RRL K       LL+L N       V N   +  F+L       C  
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLLN-------VQNAKAWNAFNLS------CKI 268

Query: 170 -------EVKDSVANKEVLALELVSWRKELAVSEME---------------RRSCGGDLL 207
                  +V D ++      + L      L   E++               R     +  
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328

Query: 208 NLKKGMCLRFSMNFPRGFDLEKRVMNW--VEQWQ-------DLPYISP------YEDAFH 252
            L   +      +    +D      NW  V   +        L  + P      ++    
Sbjct: 329 RL--SIIAESIRDGLATWD------NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380

Query: 253 FAPSGDLAEKWAVAVLHELLWLLVSKKTERDNLFCLGDY-LGFGDRFKRALRHHPGIFYV 311
           F PS  +       +L  L+W  V K      +  L  Y L      +  +        +
Sbjct: 381 FPPSAHIPTI----LL-SLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435

Query: 312 SNKIRTQTVV---LREAYRK-------DFLVERHPLMGMRHRYI--HLMNKSNDRRKPVG 359
             K+  +  +   + + Y         D +     L    + +I  HL N  +  R  + 
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLIPP--YLDQYFYSHIGHHLKNIEHPERMTLF 493

Query: 360 VVAFGSQR--KTKDVKTTLAGRMNAELEDIVLD 390
            + F   R  + K    + A   +  + + +  
Sbjct: 494 RMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQ 526

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 40.6 bits (94), Expect = 9e-04
 Identities = 54/346 (15%), Positives = 106/346 (30%), Gaps = 127/346 (36%)

Query: 20  LRTFINARVKWVP------DPF--------LDDAVSKEKNLKQILSFKNQLVHSPSKSLP 65
           L  +++ R + +P      +P         + D ++   N K +    ++L         
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV--NCDKLTTIIE---- 360

Query: 66  LSSLSLLKPHLDLPTTTALKFFQKYPSFFTLFQPCPSLPLHVKLTPQALTL-----HKEE 120
            SSL++L+P            ++K     ++F      P    +    L+L      K +
Sbjct: 361 -SSLNVLEPAE----------YRKMFDRLSVF------PPSAHIPTILLSLIWFDVIKSD 403

Query: 121 SAIHGLPAQRDDAVRRLAKLLMLTNAGKLPFYVINRFKFDLGLPYNYVCEVKDSVANKEV 180
                        V +L K  ++    K     I           +   E+K  + N+  
Sbjct: 404 V---------MVVVNKLHKYSLVEKQPKESTISI----------PSIYLELKVKLENE-- 442

Query: 181 LALELVSWRKELAVSEMERRSCGGDLLNLKKGMCLRFSMNFPRGFDLEKRVMNWVEQWQD 240
                           + R      +++           N P+ FD +  +  +++Q   
Sbjct: 443 --------------YALHRS-----IVD---------HYNIPKTFDSDDLIPPYLDQ--- 471

Query: 241 LPYISPYEDAFHFAPSGDLAEKWAVAVLHELLWLLVSKKTERDNLFCLGDYLGFGDRF-K 299
             Y   Y    H                H    L   +  ER  LF +  +L F  RF +
Sbjct: 472 --YF--Y---SHIG-------------HH----LKNIEHPERMTLFRM-VFLDF--RFLE 504

Query: 300 RALRHHPGIFYVSNKIRTQTVVLREAYRKDFLVERHPLMGMRHRYI 345
           + +RH    +  S  I      L+  Y+  ++ +  P      R +
Sbjct: 505 QKIRHDSTAWNASGSILNTLQQLKF-YKP-YICDNDPK---YERLV 545

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00